Query 001109
Match_columns 1155
No_of_seqs 558 out of 2964
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 11:30:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-67 7.3E-72 683.3 77.3 758 28-943 3-817 (902)
2 2ymu_A WD-40 repeat protein; u 100.0 1.1E-49 3.6E-54 491.2 61.4 526 39-769 13-550 (577)
3 1nr0_A Actin interacting prote 100.0 9.3E-49 3.2E-53 488.7 54.2 519 40-755 16-609 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 1.1E-46 3.7E-51 464.3 57.6 515 39-754 54-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 7.6E-43 2.6E-47 469.8 59.9 498 36-764 609-1165(1249)
6 1pgu_A Actin interacting prote 100.0 1.3E-42 4.6E-47 429.8 50.2 503 39-758 15-615 (615)
7 1nr0_A Actin interacting prote 100.0 1.7E-41 5.9E-46 423.0 53.2 488 39-689 56-610 (611)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-41 5.5E-46 456.9 52.2 526 39-767 654-1217(1249)
9 2oaj_A Protein SNI1; WD40 repe 100.0 2E-39 6.9E-44 420.9 59.0 559 38-764 54-739 (902)
10 3mkq_A Coatomer beta'-subunit; 100.0 3.9E-36 1.3E-40 385.8 50.5 475 39-754 10-502 (814)
11 1pgu_A Actin interacting prote 100.0 2.3E-35 7.9E-40 364.9 48.7 478 81-767 16-583 (615)
12 1vyh_C Platelet-activating fac 100.0 1E-34 3.5E-39 343.8 38.9 306 37-689 103-410 (410)
13 1vyh_C Platelet-activating fac 100.0 8.2E-34 2.8E-38 336.0 37.8 148 547-755 242-409 (410)
14 1got_B GT-beta; complex (GTP-b 100.0 2.1E-33 7.1E-38 323.5 39.8 287 81-687 53-340 (340)
15 2ynn_A Coatomer subunit beta'; 100.0 5.6E-33 1.9E-37 314.8 41.5 293 32-690 4-302 (304)
16 3mkq_A Coatomer beta'-subunit; 100.0 3.1E-32 1.1E-36 349.6 52.9 445 81-767 11-470 (814)
17 4gqb_B Methylosome protein 50; 100.0 1.1E-33 3.7E-38 327.2 34.0 292 39-693 27-334 (344)
18 1r5m_A SIR4-interacting protei 100.0 6.4E-33 2.2E-37 325.4 40.8 358 39-689 42-424 (425)
19 3ow8_A WD repeat-containing pr 100.0 5.4E-33 1.8E-37 317.9 39.0 149 546-755 171-319 (321)
20 3iz6_a 40S ribosomal protein R 100.0 1.2E-33 4.1E-38 330.9 33.2 325 68-691 50-376 (380)
21 4g56_B MGC81050 protein; prote 100.0 1.2E-33 4.1E-38 328.3 32.4 145 553-757 196-343 (357)
22 4gqb_B Methylosome protein 50; 100.0 2.5E-33 8.6E-38 324.1 34.5 148 553-760 184-334 (344)
23 2pm9_A Protein WEB1, protein t 100.0 1.7E-34 5.9E-39 339.3 25.1 365 42-691 12-415 (416)
24 3ow8_A WD repeat-containing pr 100.0 9E-33 3.1E-37 316.1 38.3 201 39-334 29-237 (321)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.8E-32 1.3E-36 313.8 40.5 178 546-764 157-342 (345)
26 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.1E-32 1.8E-36 312.7 40.7 205 39-333 12-224 (345)
27 2pbi_B Guanine nucleotide-bind 100.0 2.6E-32 9.1E-37 316.5 38.2 290 81-687 62-354 (354)
28 3vl1_A 26S proteasome regulato 100.0 2.7E-32 9.3E-37 321.6 38.7 155 546-757 254-419 (420)
29 1r5m_A SIR4-interacting protei 100.0 4.5E-32 1.5E-36 318.2 39.8 353 66-756 27-424 (425)
30 1gxr_A ESG1, transducin-like e 100.0 7.6E-32 2.6E-36 306.2 38.5 322 41-689 8-336 (337)
31 2ynn_A Coatomer subunit beta'; 100.0 1.3E-31 4.5E-36 303.5 39.8 147 550-757 152-302 (304)
32 4g56_B MGC81050 protein; prote 100.0 3.1E-32 1.1E-36 316.4 35.0 321 46-691 9-344 (357)
33 1erj_A Transcriptional repress 100.0 2.3E-31 7.9E-36 312.9 42.6 172 550-757 218-389 (393)
34 3frx_A Guanine nucleotide-bind 100.0 2.3E-31 8E-36 303.7 39.4 150 550-759 165-319 (319)
35 2hes_X YDR267CP; beta-propelle 100.0 2.3E-31 7.7E-36 305.3 38.1 163 546-757 160-328 (330)
36 1got_B GT-beta; complex (GTP-b 100.0 4.2E-31 1.4E-35 304.2 39.5 281 225-754 58-340 (340)
37 2pm9_A Protein WEB1, protein t 100.0 6.3E-33 2.2E-37 325.9 24.2 340 85-758 14-415 (416)
38 1gxr_A ESG1, transducin-like e 100.0 3.2E-31 1.1E-35 301.1 36.2 326 83-755 9-335 (337)
39 2xzm_R RACK1; ribosome, transl 100.0 7.7E-31 2.6E-35 302.3 38.4 153 547-759 180-342 (343)
40 1erj_A Transcriptional repress 100.0 4.5E-31 1.5E-35 310.4 37.2 208 39-335 61-288 (393)
41 3iz6_a 40S ribosomal protein R 100.0 1.8E-31 6.2E-36 312.3 33.0 307 225-759 69-377 (380)
42 3frx_A Guanine nucleotide-bind 100.0 2.1E-30 7.2E-35 295.8 39.1 206 39-334 14-227 (319)
43 2pbi_B Guanine nucleotide-bind 100.0 3.8E-30 1.3E-34 298.3 40.6 286 225-754 67-354 (354)
44 2xzm_R RACK1; ribosome, transl 100.0 5.9E-30 2E-34 294.9 41.2 210 38-333 17-243 (343)
45 3gre_A Serine/threonine-protei 100.0 1.3E-31 4.4E-36 318.3 27.8 179 36-334 57-245 (437)
46 4ery_A WD repeat-containing pr 100.0 4.7E-30 1.6E-34 290.7 39.0 203 39-335 20-224 (312)
47 4aow_A Guanine nucleotide-bind 100.0 7.8E-30 2.7E-34 290.6 40.6 148 552-759 186-339 (340)
48 4aow_A Guanine nucleotide-bind 100.0 1.8E-29 6.2E-34 287.6 40.6 204 39-334 35-246 (340)
49 2j04_B YDR362CP, TAU91; beta p 100.0 7.3E-32 2.5E-36 328.7 22.1 361 38-756 129-516 (524)
50 2hes_X YDR267CP; beta-propelle 100.0 5.2E-30 1.8E-34 294.0 36.0 203 39-334 11-230 (330)
51 4ery_A WD repeat-containing pr 100.0 2.7E-29 9.3E-34 284.4 39.9 151 546-756 156-311 (312)
52 3zwl_B Eukaryotic translation 100.0 2.1E-28 7.3E-33 281.1 43.7 221 33-335 23-250 (369)
53 3v7d_B Cell division control p 100.0 1.9E-28 6.5E-33 293.4 43.9 344 32-753 111-459 (464)
54 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.1E-28 1.4E-32 289.4 45.5 145 551-757 289-442 (445)
55 4h5i_A Guanine nucleotide-exch 100.0 3.8E-29 1.3E-33 291.3 35.3 157 546-757 183-343 (365)
56 3k26_A Polycomb protein EED; W 100.0 5.2E-29 1.8E-33 286.2 34.8 331 36-689 12-365 (366)
57 3zwl_B Eukaryotic translation 100.0 7.7E-28 2.6E-32 276.5 42.5 158 546-764 182-353 (369)
58 1sq9_A Antiviral protein SKI8; 100.0 1.4E-28 4.7E-33 287.3 34.6 116 38-155 12-157 (397)
59 4a11_B DNA excision repair pro 100.0 3.3E-28 1.1E-32 284.0 37.6 350 36-756 37-404 (408)
60 3ei3_B DNA damage-binding prot 100.0 2E-28 6.8E-33 285.5 33.9 201 39-336 70-284 (383)
61 3i2n_A WD repeat-containing pr 100.0 2.6E-28 9E-33 279.7 34.1 306 225-761 21-357 (357)
62 1k8k_C P40, ARP2/3 complex 41 100.0 6E-28 2.1E-32 278.6 36.2 208 38-336 4-235 (372)
63 3i2n_A WD repeat-containing pr 100.0 2E-28 7E-33 280.6 31.8 208 37-335 13-244 (357)
64 3dm0_A Maltose-binding peripla 100.0 4.2E-28 1.4E-32 306.7 37.9 208 38-335 378-593 (694)
65 3ei3_B DNA damage-binding prot 100.0 8E-28 2.7E-32 280.4 37.3 167 547-757 212-382 (383)
66 2j04_B YDR362CP, TAU91; beta p 100.0 2.4E-29 8.1E-34 306.5 25.0 193 50-334 169-386 (524)
67 4h5i_A Guanine nucleotide-exch 100.0 2.2E-28 7.4E-33 284.9 30.7 113 546-690 226-343 (365)
68 3dm0_A Maltose-binding peripla 100.0 8.9E-28 3E-32 303.7 38.7 144 553-756 533-692 (694)
69 4e54_B DNA damage-binding prot 100.0 6.6E-29 2.2E-33 296.0 26.3 206 39-336 116-329 (435)
70 4e54_B DNA damage-binding prot 100.0 1.7E-28 6E-33 292.3 29.3 310 224-761 121-434 (435)
71 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-29 5.1E-34 302.2 19.5 196 37-335 10-212 (588)
72 1k8k_C P40, ARP2/3 complex 41 100.0 6.1E-28 2.1E-32 278.6 32.4 293 227-760 13-364 (372)
73 1sq9_A Antiviral protein SKI8; 100.0 1.3E-27 4.6E-32 278.9 34.9 158 546-759 193-397 (397)
74 3k26_A Polycomb protein EED; W 100.0 1.3E-27 4.5E-32 274.5 31.9 133 590-757 229-366 (366)
75 3odt_A Protein DOA1; ubiquitin 100.0 1.6E-26 5.6E-31 259.6 39.1 283 225-764 21-303 (313)
76 3vl1_A 26S proteasome regulato 100.0 1.1E-26 3.8E-31 273.6 39.0 223 43-335 98-323 (420)
77 3odt_A Protein DOA1; ubiquitin 100.0 2.2E-26 7.6E-31 258.5 39.5 284 81-695 16-301 (313)
78 4aez_A CDC20, WD repeat-contai 100.0 4.8E-27 1.6E-31 276.5 35.6 279 244-765 105-388 (401)
79 4aez_A CDC20, WD repeat-contai 100.0 8.4E-27 2.9E-31 274.4 37.6 298 32-696 80-386 (401)
80 3dwl_C Actin-related protein 2 100.0 1.9E-28 6.6E-33 284.5 22.2 223 38-336 7-238 (377)
81 2pm7_B Protein transport prote 100.0 4.3E-27 1.5E-31 265.3 32.6 154 551-756 113-284 (297)
82 4ggc_A P55CDC, cell division c 100.0 2.9E-26 9.8E-31 258.5 38.9 101 553-690 213-315 (318)
83 4gga_A P55CDC, cell division c 100.0 6.8E-27 2.3E-31 277.1 34.8 158 546-761 237-399 (420)
84 4ggc_A P55CDC, cell division c 100.0 1.5E-26 5.3E-31 260.7 34.6 155 546-758 157-316 (318)
85 4gga_A P55CDC, cell division c 100.0 4.5E-26 1.5E-30 270.0 39.8 284 86-694 108-399 (420)
86 3v7d_B Cell division control p 100.0 4.5E-26 1.5E-30 272.7 39.9 154 546-764 275-428 (464)
87 4a11_B DNA excision repair pro 100.0 1.4E-26 4.7E-31 270.2 33.5 340 103-764 21-372 (408)
88 3dw8_B Serine/threonine-protei 100.0 2.1E-26 7.3E-31 273.2 34.5 161 546-755 233-444 (447)
89 3dwl_C Actin-related protein 2 100.0 3.1E-27 1E-31 274.4 24.8 261 218-689 12-280 (377)
90 3bg1_A Protein SEC13 homolog; 100.0 5.2E-27 1.8E-31 267.3 25.8 156 551-759 117-296 (316)
91 1p22_A F-BOX/WD-repeat protein 99.9 1.6E-25 5.6E-30 266.3 35.3 127 552-713 307-433 (435)
92 2pm7_B Protein transport prote 99.9 1.3E-25 4.5E-30 253.2 32.2 253 37-402 4-284 (297)
93 3mmy_A MRNA export factor; mRN 99.9 2.1E-25 7.1E-30 256.0 33.9 81 38-118 35-121 (368)
94 3f3f_A Nucleoporin SEH1; struc 99.9 4.2E-25 1.4E-29 250.4 33.2 221 37-335 6-250 (351)
95 3f3f_A Nucleoporin SEH1; struc 99.9 4.6E-25 1.6E-29 250.0 33.2 166 551-764 124-344 (351)
96 1yfq_A Cell cycle arrest prote 99.9 6.8E-25 2.3E-29 250.2 34.3 209 38-335 7-226 (342)
97 3dw8_B Serine/threonine-protei 99.9 3.6E-25 1.2E-29 262.7 32.7 218 41-334 27-315 (447)
98 3jrp_A Fusion protein of prote 99.9 2.6E-25 8.8E-30 256.7 30.5 158 551-760 115-290 (379)
99 2ovr_B FBW7, F-BOX/WD repeat p 99.9 7.2E-24 2.5E-28 252.6 43.1 269 243-764 130-398 (445)
100 1k32_A Tricorn protease; prote 99.9 1.1E-23 3.8E-28 278.4 49.2 515 39-759 49-639 (1045)
101 3mmy_A MRNA export factor; mRN 99.9 1.5E-24 5E-29 248.9 34.2 158 553-754 182-343 (368)
102 1p22_A F-BOX/WD-repeat protein 99.9 1.1E-24 3.6E-29 259.3 33.1 148 550-764 265-421 (435)
103 1yfq_A Cell cycle arrest prote 99.9 5.9E-24 2E-28 242.4 37.2 152 546-754 157-321 (342)
104 2j04_A TAU60, YPL007P, hypothe 99.9 5.4E-26 1.8E-30 271.6 20.9 105 546-689 189-296 (588)
105 3gre_A Serine/threonine-protei 99.9 1.9E-24 6.6E-29 256.4 34.2 164 547-767 178-369 (437)
106 1k32_A Tricorn protease; prote 99.9 8.6E-23 2.9E-27 270.0 49.4 445 41-759 13-504 (1045)
107 3bg1_A Protein SEC13 homolog; 99.9 8.2E-25 2.8E-29 249.1 25.7 258 38-402 9-292 (316)
108 3vu4_A KMHSV2; beta-propeller 99.9 6.3E-24 2.1E-28 246.1 31.1 122 590-758 193-337 (355)
109 3lrv_A PRE-mRNA-splicing facto 99.9 5.7E-24 2E-28 244.7 29.1 152 546-755 177-331 (343)
110 3jrp_A Fusion protein of prote 99.9 1E-23 3.5E-28 243.2 30.8 256 38-402 7-286 (379)
111 3vu4_A KMHSV2; beta-propeller 99.9 1.1E-23 3.8E-28 244.0 30.1 209 39-335 16-228 (355)
112 2xyi_A Probable histone-bindin 99.9 2.5E-23 8.6E-28 247.4 33.6 150 550-757 243-410 (430)
113 2aq5_A Coronin-1A; WD40 repeat 99.9 3.4E-24 1.2E-28 251.9 25.4 160 546-763 183-348 (402)
114 1l0q_A Surface layer protein; 99.9 2.6E-22 9E-27 233.9 39.6 170 547-760 165-345 (391)
115 2aq5_A Coronin-1A; WD40 repeat 99.9 3E-23 1E-27 243.9 28.6 202 43-335 35-255 (402)
116 4gq1_A NUP37; propeller, trans 99.9 6.4E-23 2.2E-27 241.0 30.6 134 590-755 252-387 (393)
117 2vdu_B TRNA (guanine-N(7)-)-me 99.9 5.9E-23 2E-27 245.5 30.6 163 84-335 5-230 (450)
118 3lrv_A PRE-mRNA-splicing facto 99.9 1.7E-23 6E-28 240.6 25.1 157 546-759 132-294 (343)
119 3jro_A Fusion protein of prote 99.9 1.8E-23 6E-28 266.9 26.4 157 551-759 113-287 (753)
120 4gq1_A NUP37; propeller, trans 99.9 2.6E-23 8.9E-28 244.4 25.7 176 91-335 97-287 (393)
121 3bws_A Protein LP49; two-domai 99.9 3.5E-22 1.2E-26 236.3 35.2 198 41-334 59-292 (433)
122 3bws_A Protein LP49; two-domai 99.9 9.5E-22 3.2E-26 232.5 38.6 134 559-756 281-431 (433)
123 1nir_A Nitrite reductase; hemo 99.9 1E-21 3.5E-26 240.7 37.9 205 49-335 144-356 (543)
124 1nir_A Nitrite reductase; hemo 99.9 1.1E-21 3.6E-26 240.5 37.5 352 90-765 144-522 (543)
125 2vdu_B TRNA (guanine-N(7)-)-me 99.9 7.8E-22 2.7E-26 235.8 35.0 152 546-713 202-363 (450)
126 2xyi_A Probable histone-bindin 99.9 5.5E-22 1.9E-26 235.8 31.8 169 79-334 124-309 (430)
127 2w18_A PALB2, fancn, partner a 99.9 1.2E-21 4.1E-26 220.9 31.1 103 553-688 252-355 (356)
128 2w18_A PALB2, fancn, partner a 99.9 1.9E-21 6.5E-26 219.3 30.4 151 550-755 192-355 (356)
129 3jro_A Fusion protein of prote 99.9 3.7E-22 1.3E-26 254.7 27.3 253 37-402 4-284 (753)
130 1l0q_A Surface layer protein; 99.9 8.5E-21 2.9E-25 221.1 34.9 160 546-769 122-287 (391)
131 2ecf_A Dipeptidyl peptidase IV 99.8 2.9E-18 9.9E-23 217.8 35.4 123 30-155 22-181 (741)
132 2ecf_A Dipeptidyl peptidase IV 99.8 2.9E-18 9.9E-23 217.8 35.1 154 546-758 293-460 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.8 3.3E-18 1.1E-22 202.5 31.8 130 546-718 273-411 (415)
134 1xfd_A DIP, dipeptidyl aminope 99.8 6.5E-18 2.2E-22 213.8 32.3 172 85-333 18-203 (723)
135 2z3z_A Dipeptidyl aminopeptida 99.8 2E-17 6.8E-22 208.9 36.3 104 45-155 28-150 (706)
136 2z3z_A Dipeptidyl aminopeptida 99.8 3.3E-17 1.1E-21 206.9 32.4 156 546-759 264-437 (706)
137 1xfd_A DIP, dipeptidyl aminope 99.8 3.4E-17 1.1E-21 207.2 29.5 111 42-155 16-143 (723)
138 1ri6_A Putative isomerase YBHE 99.8 2.8E-16 9.6E-21 178.3 33.6 191 56-334 7-209 (343)
139 1pby_B Quinohemoprotein amine 99.7 4.9E-16 1.7E-20 175.8 31.2 100 55-154 2-123 (337)
140 2hqs_A Protein TOLB; TOLB, PAL 99.7 1.8E-16 6.1E-21 187.6 28.2 220 39-371 175-407 (415)
141 3hfq_A Uncharacterized protein 99.7 8E-15 2.7E-19 167.9 39.2 165 546-764 147-326 (347)
142 1ri6_A Putative isomerase YBHE 99.7 5E-15 1.7E-19 167.9 35.5 164 546-761 135-314 (343)
143 2ojh_A Uncharacterized protein 99.7 4.1E-16 1.4E-20 172.2 24.0 178 59-333 17-203 (297)
144 3o4h_A Acylamino-acid-releasin 99.7 7.8E-16 2.7E-20 190.0 28.8 153 83-334 21-184 (582)
145 2ojh_A Uncharacterized protein 99.7 9.8E-16 3.3E-20 169.1 26.4 144 546-748 135-293 (297)
146 1z68_A Fibroblast activation p 99.7 5.5E-16 1.9E-20 196.2 26.9 166 88-333 20-199 (719)
147 1pby_B Quinohemoprotein amine 99.7 3.5E-15 1.2E-19 168.8 30.0 156 546-767 141-320 (337)
148 1z68_A Fibroblast activation p 99.7 1.2E-15 4.2E-20 193.0 24.9 107 47-155 20-139 (719)
149 3u4y_A Uncharacterized protein 99.7 2.7E-14 9.2E-19 161.9 31.2 162 546-759 134-306 (331)
150 1jmx_B Amine dehydrogenase; ox 99.7 4.3E-14 1.5E-18 160.8 32.4 82 658-767 253-335 (349)
151 3vgz_A Uncharacterized protein 99.7 4.5E-14 1.5E-18 161.1 32.1 144 546-749 191-336 (353)
152 2oit_A Nucleoporin 214KDA; NH2 99.7 2.9E-15 1E-19 178.2 22.8 177 546-767 43-232 (434)
153 3o4h_A Acylamino-acid-releasin 99.7 1.1E-14 3.7E-19 179.8 27.6 193 42-335 21-228 (582)
154 3scy_A Hypothetical bacterial 99.6 6.1E-13 2.1E-17 153.2 38.4 167 546-764 161-346 (361)
155 3u4y_A Uncharacterized protein 99.6 1.8E-14 6E-19 163.5 24.5 203 42-337 40-255 (331)
156 1urq_A M-tomosyn isoform; tran 99.6 5.4E-16 1.9E-20 128.6 8.3 60 1084-1148 4-63 (63)
157 1jof_A Carboxy-CIS,CIS-muconat 99.6 2.4E-13 8.2E-18 157.5 32.4 171 546-758 151-342 (365)
158 3vgz_A Uncharacterized protein 99.6 3.3E-13 1.1E-17 153.9 32.2 206 41-337 39-265 (353)
159 2nps_A VAMP-4, vesicle-associa 99.6 1.3E-15 4.5E-20 132.3 7.9 66 1080-1154 4-69 (74)
160 2oit_A Nucleoporin 214KDA; NH2 99.6 1.2E-14 4E-19 173.0 18.3 204 42-335 36-279 (434)
161 4a5s_A Dipeptidyl peptidase 4 99.6 6.9E-13 2.4E-17 168.7 35.5 110 40-152 14-138 (740)
162 3hfq_A Uncharacterized protein 99.6 2.1E-13 7.2E-18 156.1 26.4 213 39-334 36-271 (347)
163 1jmx_B Amine dehydrogenase; ox 99.6 7.1E-14 2.4E-18 159.0 22.2 236 47-336 4-327 (349)
164 1sfc_A VAMP 2, protein (synapt 99.6 2.6E-15 9E-20 136.6 7.8 66 1080-1154 26-91 (96)
165 3hd7_A Vesicle-associated memb 99.6 3.4E-15 1.2E-19 135.0 7.6 63 1083-1154 4-66 (91)
166 1l4a_A Synaptobrevin; snare, s 99.6 1.6E-15 5.3E-20 133.8 4.5 65 1081-1154 12-76 (80)
167 1n7s_A Vesicle-associated memb 99.5 5.9E-15 2E-19 124.2 7.5 63 1081-1152 1-63 (63)
168 3b5n_A Synaptobrevin homolog 1 99.5 1.8E-14 6.1E-19 120.2 7.7 59 1085-1152 3-61 (61)
169 3scy_A Hypothetical bacterial 99.5 4.7E-12 1.6E-16 145.8 30.8 209 41-333 48-290 (361)
170 3c5m_A Oligogalacturonate lyas 99.5 9.5E-13 3.2E-17 152.7 22.3 98 44-146 37-138 (396)
171 2oiz_A Aromatic amine dehydrog 99.5 3.1E-11 1.1E-15 139.8 34.9 86 597-713 258-356 (361)
172 3pe7_A Oligogalacturonate lyas 99.5 7.8E-12 2.7E-16 144.9 28.8 68 89-156 41-112 (388)
173 3pe7_A Oligogalacturonate lyas 99.4 1.3E-11 4.6E-16 142.9 27.7 94 48-141 41-141 (388)
174 2oiz_A Aromatic amine dehydrog 99.4 8.7E-12 3E-16 144.4 25.9 101 52-154 13-139 (361)
175 1gl2_A Endobrevin; membrane pr 99.4 2.5E-13 8.4E-18 114.7 7.5 60 1081-1145 6-65 (65)
176 2kog_A Vesicle-associated memb 99.4 7.7E-15 2.6E-19 138.9 -3.9 65 1081-1154 30-94 (119)
177 1jof_A Carboxy-CIS,CIS-muconat 99.4 9.3E-12 3.2E-16 144.1 20.5 217 44-335 84-342 (365)
178 1qks_A Cytochrome CD1 nitrite 99.4 1.4E-09 4.9E-14 133.0 40.4 204 50-335 163-374 (567)
179 3azo_A Aminopeptidase; POP fam 99.3 1.6E-10 5.6E-15 144.3 29.2 106 39-145 20-150 (662)
180 4a5s_A Dipeptidyl peptidase 4 99.3 3.5E-10 1.2E-14 143.7 31.0 101 590-711 257-370 (740)
181 1qks_A Cytochrome CD1 nitrite 99.3 6.2E-09 2.1E-13 127.4 40.3 172 546-765 348-546 (567)
182 3azo_A Aminopeptidase; POP fam 99.3 1.6E-10 5.5E-15 144.4 25.8 121 546-694 248-373 (662)
183 3fvz_A Peptidyl-glycine alpha- 99.2 2.9E-09 9.9E-14 121.3 28.8 254 43-403 24-322 (329)
184 1q7f_A NHL, brain tumor CG1071 99.2 6E-09 2E-13 115.4 30.0 200 40-333 27-237 (286)
185 2gop_A Trilobed protease; beta 99.2 1.8E-08 6.1E-13 114.7 31.7 69 85-159 16-96 (347)
186 2nut_C Vesicle-trafficking pro 99.1 2.4E-12 8.3E-17 135.2 -3.2 64 1082-1154 132-195 (196)
187 3e5z_A Putative gluconolactona 99.1 9.1E-09 3.1E-13 114.8 23.2 197 41-333 26-245 (296)
188 2xdw_A Prolyl endopeptidase; a 99.1 2.4E-08 8E-13 126.2 29.7 155 546-759 239-416 (710)
189 2xdw_A Prolyl endopeptidase; a 99.1 1.3E-08 4.5E-13 128.5 27.2 116 39-154 121-267 (710)
190 1q7f_A NHL, brain tumor CG1071 99.1 2.6E-08 8.9E-13 110.2 26.1 199 41-335 75-281 (286)
191 2dg1_A DRP35, lactonase; beta 99.0 3.8E-08 1.3E-12 111.4 27.6 207 40-333 42-262 (333)
192 3fvz_A Peptidyl-glycine alpha- 99.0 5.1E-09 1.7E-13 119.2 20.2 207 40-335 88-323 (329)
193 4b93_A Vesicle-associated memb 99.0 4.3E-13 1.5E-17 139.6 -13.4 65 1081-1154 122-186 (189)
194 3c5m_A Oligogalacturonate lyas 99.0 2.3E-09 7.9E-14 124.0 16.2 111 46-156 84-224 (396)
195 2gop_A Trilobed protease; beta 99.0 7.5E-09 2.6E-13 117.8 20.2 109 43-154 59-206 (347)
196 2bkl_A Prolyl endopeptidase; m 98.9 8.7E-09 3E-13 129.8 18.7 247 40-336 118-399 (695)
197 3dsm_A Uncharacterized protein 98.9 3.1E-07 1.1E-11 104.4 29.8 194 43-337 44-256 (328)
198 3no2_A Uncharacterized protein 98.9 3.4E-08 1.2E-12 109.7 21.1 189 53-336 4-197 (276)
199 1rwi_B Serine/threonine-protei 98.9 1.2E-07 4E-12 103.6 25.2 195 44-335 25-223 (270)
200 2bkl_A Prolyl endopeptidase; m 98.9 2E-08 6.7E-13 126.6 20.9 155 546-760 233-400 (695)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 2.9E-07 1E-11 102.8 27.8 203 43-336 18-258 (314)
202 3e5z_A Putative gluconolactona 98.9 1.5E-07 5.2E-12 104.8 23.9 114 40-154 66-201 (296)
203 2z2n_A Virginiamycin B lyase; 98.9 4.9E-06 1.7E-10 91.6 35.7 199 40-335 12-213 (299)
204 1xip_A Nucleoporin NUP159; bet 98.8 6.2E-08 2.1E-12 112.2 18.9 177 44-320 39-230 (388)
205 1rwi_B Serine/threonine-protei 98.8 1.5E-07 5.1E-12 102.8 19.8 197 43-335 67-265 (270)
206 3no2_A Uncharacterized protein 98.8 2.4E-07 8.4E-12 102.7 21.5 160 546-765 43-203 (276)
207 2dg1_A DRP35, lactonase; beta 98.8 5.3E-07 1.8E-11 101.9 24.4 116 40-155 84-213 (333)
208 2mad_H Methylamine dehydrogena 98.8 1E-05 3.5E-10 93.7 34.6 168 552-764 178-357 (373)
209 2z2n_A Virginiamycin B lyase; 98.8 1.5E-05 5.2E-10 87.7 34.4 152 546-760 147-298 (299)
210 1yr2_A Prolyl oligopeptidase; 98.7 7.7E-07 2.6E-11 112.9 26.4 154 546-760 274-444 (741)
211 1xip_A Nucleoporin NUP159; bet 98.7 4.9E-08 1.7E-12 113.1 13.8 142 546-760 44-194 (388)
212 3sjl_D Methylamine dehydrogena 98.7 2E-06 6.7E-11 99.3 26.7 168 552-769 190-375 (386)
213 2mad_H Methylamine dehydrogena 98.7 2E-06 6.9E-11 99.7 26.9 103 47-153 70-194 (373)
214 3g4e_A Regucalcin; six bladed 98.7 1.5E-06 5E-11 97.2 24.8 231 44-388 14-262 (297)
215 3sjl_D Methylamine dehydrogena 98.7 7.2E-06 2.5E-10 94.6 30.4 110 48-161 38-173 (386)
216 4a2l_A BT_4663, two-component 98.7 0.0039 1.3E-07 79.4 58.2 492 43-775 88-589 (795)
217 3hrp_A Uncharacterized protein 98.7 8.2E-07 2.8E-11 104.4 21.3 217 43-335 131-355 (409)
218 3dsm_A Uncharacterized protein 98.7 3.8E-07 1.3E-11 103.7 17.9 196 42-333 83-301 (328)
219 3c75_H MADH, methylamine dehyd 98.6 2.7E-06 9.3E-11 99.8 25.1 136 597-771 269-417 (426)
220 3kyq_A YKT6, synaptobrevin hom 98.6 4.1E-10 1.4E-14 117.4 -6.8 58 1083-1145 137-194 (199)
221 1yr2_A Prolyl oligopeptidase; 98.6 7E-07 2.4E-11 113.3 21.1 116 39-155 159-303 (741)
222 3g4e_A Regucalcin; six bladed 98.6 3.2E-06 1.1E-10 94.4 23.6 196 40-324 51-262 (297)
223 4a2l_A BT_4663, two-component 98.6 0.0066 2.3E-07 77.3 55.8 161 549-760 366-529 (795)
224 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 2.8E-06 9.5E-11 94.7 21.4 202 41-334 69-299 (314)
225 2qc5_A Streptogramin B lactona 98.6 0.00012 4.2E-09 80.3 34.2 195 42-332 19-216 (300)
226 3c75_H MADH, methylamine dehyd 98.5 3E-06 1E-10 99.4 21.4 228 47-337 122-405 (426)
227 3iuj_A Prolyl endopeptidase; h 98.5 1.9E-06 6.5E-11 108.4 20.2 124 30-155 117-268 (693)
228 2ghs_A AGR_C_1268P; regucalcin 98.5 3E-05 1E-09 87.8 28.3 107 45-154 51-167 (326)
229 1kb0_A Quinohemoprotein alcoho 98.4 2.7E-05 9.3E-10 97.4 27.1 191 546-769 249-519 (677)
230 1yiq_A Quinohemoprotein alcoho 98.4 5.4E-05 1.8E-09 94.9 29.7 193 546-768 241-516 (689)
231 2qe8_A Uncharacterized protein 98.4 1.6E-05 5.3E-10 90.8 22.3 115 40-155 64-224 (343)
232 3dr2_A Exported gluconolactona 98.4 1.2E-05 4E-10 90.1 20.1 114 41-155 84-224 (305)
233 2qc5_A Streptogramin B lactona 98.4 0.00043 1.5E-08 75.8 32.5 154 546-761 26-179 (300)
234 1kb0_A Quinohemoprotein alcoho 98.4 7.7E-05 2.6E-09 93.3 29.2 40 660-699 477-516 (677)
235 3hrp_A Uncharacterized protein 98.3 1E-05 3.5E-10 95.0 19.3 217 48-332 176-408 (409)
236 2hz6_A Endoplasmic reticulum t 98.3 1.3E-07 4.3E-12 109.7 2.1 103 53-159 8-113 (369)
237 3dr2_A Exported gluconolactona 98.3 4.2E-05 1.4E-09 85.5 22.6 97 43-141 45-147 (305)
238 2ghs_A AGR_C_1268P; regucalcin 98.3 6.8E-05 2.3E-09 84.8 24.2 112 41-154 88-209 (326)
239 1mda_H Methylamine dehydrogena 98.3 7.1E-06 2.4E-10 94.6 15.3 100 47-152 69-191 (368)
240 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.00076 2.6E-08 77.4 31.8 104 53-160 52-165 (376)
241 3v9f_A Two-component system se 98.2 0.041 1.4E-06 69.7 57.4 113 43-159 66-194 (781)
242 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.00043 1.5E-08 79.4 28.3 151 553-765 190-345 (376)
243 3iuj_A Prolyl endopeptidase; h 98.2 0.00012 4E-09 92.0 25.3 155 546-760 135-317 (693)
244 2qe8_A Uncharacterized protein 98.2 9E-05 3.1E-09 84.5 21.4 110 43-154 17-153 (343)
245 1yiq_A Quinohemoprotein alcoho 98.1 0.00042 1.4E-08 86.8 29.0 63 95-161 70-144 (689)
246 1mda_H Methylamine dehydrogena 98.1 3.8E-05 1.3E-09 88.5 16.4 79 665-769 269-358 (368)
247 2hz6_A Endoplasmic reticulum t 98.1 6.1E-07 2.1E-11 103.9 1.1 150 550-765 8-157 (369)
248 2iwa_A Glutamine cyclotransfer 98.1 0.0004 1.4E-08 75.9 23.3 221 32-335 8-238 (266)
249 2ece_A 462AA long hypothetical 98.0 0.0007 2.4E-08 78.8 23.8 110 45-155 140-289 (462)
250 3nol_A Glutamine cyclotransfer 97.9 0.00086 2.9E-08 72.6 21.5 124 29-159 27-157 (262)
251 3mbr_X Glutamine cyclotransfer 97.8 0.0024 8.3E-08 68.5 23.1 123 29-158 5-134 (243)
252 1npe_A Nidogen, entactin; glyc 97.8 0.0032 1.1E-07 68.5 24.7 112 44-155 37-155 (267)
253 3nol_A Glutamine cyclotransfer 97.8 0.0023 8E-08 69.2 22.1 168 76-338 33-205 (262)
254 1fwx_A Nitrous oxide reductase 97.7 0.0014 4.9E-08 78.8 21.6 95 52-146 99-216 (595)
255 3nok_A Glutaminyl cyclase; bet 97.7 0.0039 1.3E-07 67.5 22.7 169 75-338 44-214 (268)
256 3v9f_A Two-component system se 97.7 0.26 8.8E-06 62.3 63.7 114 39-159 14-148 (781)
257 3mbr_X Glutamine cyclotransfer 97.7 0.0088 3E-07 64.1 24.3 169 75-338 10-183 (243)
258 2iwa_A Glutamine cyclotransfer 97.5 0.0044 1.5E-07 67.6 20.1 158 546-766 27-190 (266)
259 3nok_A Glutaminyl cyclase; bet 97.5 0.0039 1.3E-07 67.5 19.3 119 34-159 44-166 (268)
260 2fp8_A Strictosidine synthase; 97.5 0.023 8E-07 63.4 26.7 99 43-141 19-143 (322)
261 2ece_A 462AA long hypothetical 97.4 0.008 2.7E-07 70.0 21.4 134 546-697 194-362 (462)
262 1fwx_A Nitrous oxide reductase 97.4 0.00068 2.3E-08 81.6 12.7 113 43-155 134-308 (595)
263 1kv9_A Type II quinohemoprotei 97.2 0.0076 2.6E-07 75.1 19.0 193 546-768 236-499 (668)
264 3qqz_A Putative uncharacterize 97.1 0.055 1.9E-06 58.5 23.1 115 39-154 23-150 (255)
265 2p4o_A Hypothetical protein; p 97.1 0.042 1.5E-06 60.9 23.1 111 43-157 32-147 (306)
266 2xe4_A Oligopeptidase B; hydro 97.1 0.012 4.2E-07 74.3 19.8 117 39-156 169-303 (751)
267 1npe_A Nidogen, entactin; glyc 97.0 0.046 1.6E-06 59.1 21.8 110 43-153 79-196 (267)
268 1flg_A Protein (quinoprotein e 96.8 0.041 1.4E-06 67.3 21.1 62 680-767 465-526 (582)
269 3hxj_A Pyrrolo-quinoline quino 96.8 0.017 5.9E-07 64.1 16.4 102 43-151 137-240 (330)
270 2ad6_A Methanol dehydrogenase 96.8 0.077 2.6E-06 64.6 23.3 105 55-161 161-339 (571)
271 3hxj_A Pyrrolo-quinoline quino 96.8 0.11 3.7E-06 57.4 22.5 143 552-764 108-250 (330)
272 2fp8_A Strictosidine synthase; 96.8 0.086 2.9E-06 58.7 21.6 110 44-154 81-215 (322)
273 2ad6_A Methanol dehydrogenase 96.7 0.066 2.3E-06 65.2 21.5 64 679-768 442-505 (571)
274 1kv9_A Type II quinohemoprotei 96.7 0.073 2.5E-06 66.2 22.2 80 45-124 232-343 (668)
275 1w6s_A Methanol dehydrogenase 96.6 0.084 2.9E-06 64.6 21.4 64 679-768 451-514 (599)
276 2xe4_A Oligopeptidase B; hydro 96.6 0.014 4.9E-07 73.7 14.8 152 546-757 180-354 (751)
277 3ei3_A DNA damage-binding prot 96.5 3.8 0.00013 53.8 44.5 114 44-160 515-641 (1158)
278 3fie_C Fragment of vesicle-ass 96.4 2E-05 7E-10 58.2 -7.5 31 1082-1117 7-37 (38)
279 3ei3_A DNA damage-binding prot 96.4 4.6 0.00016 53.1 68.9 204 594-909 515-728 (1158)
280 1ijq_A LDL receptor, low-densi 96.3 0.8 2.7E-05 50.9 25.7 112 43-154 30-151 (316)
281 1flg_A Protein (quinoprotein e 96.3 0.11 3.8E-06 63.3 19.8 77 46-123 249-364 (582)
282 2p9w_A MAL S 1 allergenic prot 96.2 0.57 1.9E-05 52.3 23.1 112 44-157 14-168 (334)
283 2p4o_A Hypothetical protein; p 96.1 0.92 3.1E-05 49.9 24.7 111 42-154 71-197 (306)
284 3a9g_A Putative uncharacterize 96.1 0.77 2.6E-05 52.1 24.5 98 43-142 29-151 (354)
285 2ism_A Putative oxidoreductase 96.1 0.44 1.5E-05 54.0 22.2 108 31-143 21-152 (352)
286 3v65_B Low-density lipoprotein 96.0 0.83 2.8E-05 52.4 24.6 113 43-155 116-232 (386)
287 3v64_C Agrin; beta propeller, 95.8 1.3 4.4E-05 50.0 24.8 109 44-152 74-188 (349)
288 3p5b_L Low density lipoprotein 95.8 2 6.8E-05 49.5 26.8 112 43-154 112-233 (400)
289 4hw6_A Hypothetical protein, I 95.8 0.55 1.9E-05 54.9 21.9 112 43-157 182-306 (433)
290 3sov_A LRP-6, low-density lipo 95.8 0.82 2.8E-05 51.0 22.4 109 44-153 36-152 (318)
291 3zym_A Phosphatidylinositol-bi 95.8 0.0034 1.2E-07 69.9 2.6 33 1082-1119 278-310 (310)
292 3v64_C Agrin; beta propeller, 95.7 1.7 6E-05 48.9 25.1 112 42-155 33-147 (349)
293 3tc9_A Hypothetical hydrolase; 95.7 0.26 9.1E-06 57.6 18.7 59 86-144 139-198 (430)
294 1w6s_A Methanol dehydrogenase 95.6 0.42 1.4E-05 58.4 20.5 75 47-122 245-350 (599)
295 3tc9_A Hypothetical hydrolase; 95.6 0.18 6.1E-06 59.1 16.5 112 44-157 138-257 (430)
296 2g8s_A Glucose/sorbosone dehyd 95.5 1 3.6E-05 50.9 22.2 101 43-144 18-148 (353)
297 3s94_A LRP-6, low-density lipo 95.3 7.9 0.00027 47.2 51.9 102 43-144 40-146 (619)
298 3v65_B Low-density lipoprotein 95.2 2 7E-05 49.1 23.6 106 44-151 78-186 (386)
299 3pbp_A Nucleoporin NUP82; beta 95.1 0.39 1.3E-05 55.2 16.6 169 93-329 30-207 (452)
300 2p9w_A MAL S 1 allergenic prot 95.1 0.72 2.5E-05 51.4 18.3 157 550-756 24-214 (334)
301 2xbg_A YCF48-like protein; pho 94.8 2 6.9E-05 47.8 21.7 106 41-150 120-229 (327)
302 3m0c_C LDL receptor, low-densi 94.7 4 0.00014 51.3 26.0 112 43-154 424-545 (791)
303 3amr_A 3-phytase; beta-propell 94.6 1.5 5E-05 49.4 19.4 92 63-156 98-209 (355)
304 2xbg_A YCF48-like protein; pho 94.4 1.7 5.9E-05 48.4 19.9 105 40-148 160-272 (327)
305 4a0p_A LRP6, LRP-6, low-densit 94.4 13 0.00044 45.4 53.7 101 43-144 37-142 (628)
306 3sre_A PON1, serum paraoxonase 94.1 4.2 0.00014 45.9 22.1 103 40-142 47-182 (355)
307 3pbp_A Nucleoporin NUP82; beta 94.0 0.32 1.1E-05 55.9 12.6 105 44-150 67-207 (452)
308 3qqz_A Putative uncharacterize 94.0 2.4 8.1E-05 45.6 18.9 73 83-156 26-101 (255)
309 1ijq_A LDL receptor, low-densi 94.0 9.1 0.00031 42.1 24.8 153 550-764 88-245 (316)
310 3p5b_L Low density lipoprotein 93.9 3.6 0.00012 47.3 21.8 113 43-155 159-277 (400)
311 3kya_A Putative phosphatase; s 93.9 1 3.6E-05 53.3 17.1 61 86-146 141-214 (496)
312 3amr_A 3-phytase; beta-propell 93.8 2.2 7.7E-05 47.9 18.7 65 94-160 39-113 (355)
313 4hw6_A Hypothetical protein, I 93.6 1.7 5.8E-05 50.7 18.4 151 546-756 145-303 (433)
314 3sov_A LRP-6, low-density lipo 93.6 4.4 0.00015 44.9 21.1 112 44-155 80-197 (318)
315 1k3i_A Galactose oxidase precu 93.5 1.3 4.4E-05 54.7 18.0 116 546-694 192-327 (656)
316 3s94_A LRP-6, low-density lipo 93.0 21 0.00071 43.5 49.1 113 43-156 84-201 (619)
317 1n7d_A LDL receptor, low-densi 93.0 0.2 6.9E-06 62.5 9.5 109 43-151 406-524 (699)
318 3m0c_C LDL receptor, low-densi 91.7 7.2 0.00025 49.0 21.4 112 43-154 471-588 (791)
319 1k3i_A Galactose oxidase precu 91.6 1.2 4.2E-05 54.8 14.3 115 597-759 190-325 (656)
320 3kya_A Putative phosphatase; s 91.6 4 0.00014 48.3 17.7 161 546-755 145-339 (496)
321 4a0p_A LRP6, LRP-6, low-densit 90.9 35 0.0012 41.5 54.9 112 44-155 81-197 (628)
322 1n7d_A LDL receptor, low-densi 90.8 0.65 2.2E-05 57.9 10.5 109 45-154 455-570 (699)
323 3sre_A PON1, serum paraoxonase 90.4 7.5 0.00026 43.9 18.0 105 552-690 128-252 (355)
324 1tl2_A L10, protein (tachylect 89.0 0.62 2.1E-05 48.8 6.8 100 43-148 41-156 (236)
325 2xn4_A Kelch-like protein 2; s 85.2 19 0.00067 38.7 17.0 149 550-759 108-278 (302)
326 2be1_A Serine/threonine-protei 85.2 2.9 0.0001 46.9 10.2 31 737-767 110-140 (339)
327 3das_A Putative oxidoreductase 84.3 6.1 0.00021 44.4 12.3 101 39-140 29-155 (347)
328 2vpj_A Kelch-like protein 12; 83.2 30 0.001 37.1 17.4 150 550-760 112-281 (301)
329 1cru_A Protein (soluble quinop 82.0 11 0.00038 44.0 13.9 109 31-141 17-160 (454)
330 2vpj_A Kelch-like protein 12; 81.4 51 0.0017 35.2 18.4 149 550-761 62-235 (301)
331 2ism_A Putative oxidoreductase 80.4 20 0.00069 40.0 15.0 75 594-691 32-115 (352)
332 3das_A Putative oxidoreductase 79.9 62 0.0021 36.1 18.5 73 546-623 38-116 (347)
333 3a9g_A Putative uncharacterize 77.8 87 0.003 34.8 19.2 54 660-713 259-320 (354)
334 3uc1_A DNA gyrase subunit A; D 77.5 84 0.0029 34.7 18.5 106 47-152 100-225 (327)
335 3ii7_A Kelch-like protein 7; p 77.2 35 0.0012 36.7 15.3 25 737-761 247-276 (306)
336 2xn4_A Kelch-like protein 2; s 76.6 64 0.0022 34.4 17.3 64 550-624 61-134 (302)
337 1cru_A Protein (soluble quinop 76.5 83 0.0029 36.4 19.1 55 546-603 33-87 (454)
338 1tl2_A L10, protein (tachylect 75.2 19 0.00067 37.6 11.4 96 46-148 91-203 (236)
339 3sbq_A Nitrous-oxide reductase 74.4 7.5 0.00026 46.1 8.9 104 40-143 320-453 (638)
340 3ii7_A Kelch-like protein 7; p 72.5 72 0.0025 34.1 16.3 64 550-624 55-128 (306)
341 4asc_A Kelch repeat and BTB do 71.5 26 0.00088 38.1 12.4 25 670-694 196-225 (315)
342 1zgk_A Kelch-like ECH-associat 70.2 77 0.0026 34.0 15.9 109 550-694 121-244 (308)
343 2wg3_C Hedgehog-interacting pr 68.2 34 0.0012 40.0 13.0 102 43-145 14-158 (463)
344 3hd7_B Syntaxin-1A; membrane p 65.4 18 0.00063 33.2 7.8 56 1098-1153 30-88 (109)
345 1zgk_A Kelch-like ECH-associat 65.0 44 0.0015 36.1 12.5 24 670-693 168-196 (308)
346 2uvk_A YJHT; unknown function, 64.5 39 0.0013 37.3 12.2 30 736-765 315-350 (357)
347 3sbq_A Nitrous-oxide reductase 63.3 43 0.0015 39.8 12.1 83 596-691 326-409 (638)
348 1jth_B Syntaxin 1A; coiled-coi 62.9 24 0.00081 30.2 7.6 56 1098-1153 19-77 (77)
349 2woz_A Kelch repeat and BTB do 60.1 51 0.0017 35.7 11.9 64 550-624 109-185 (318)
350 4asc_A Kelch repeat and BTB do 60.1 1.7E+02 0.0057 31.4 16.2 24 737-760 196-224 (315)
351 2be1_A Serine/threonine-protei 60.1 7.8 0.00027 43.4 5.1 105 55-161 11-134 (339)
352 2woz_A Kelch repeat and BTB do 57.7 1.1E+02 0.0039 32.8 14.3 26 669-694 157-188 (318)
353 2xzh_A Clathrin heavy chain 1; 56.4 2.4E+02 0.0083 31.3 30.0 107 45-154 69-188 (365)
354 3s25_A Hypothetical 7-bladed b 55.9 2.2E+02 0.0076 30.7 19.0 99 50-156 21-137 (302)
355 3ott_A Two-component system se 55.8 3.6E+02 0.012 33.0 49.2 466 42-760 21-505 (758)
356 1bpo_A Protein (clathrin); cla 54.7 3E+02 0.01 31.8 29.8 108 45-155 68-188 (494)
357 1xi4_A Clathrin heavy chain; a 53.1 3E+02 0.01 36.7 18.3 106 47-155 70-188 (1630)
358 2zwa_A Leucine carboxyl methyl 50.4 1.5E+02 0.0051 36.4 15.0 113 550-692 451-579 (695)
359 3s25_A Hypothetical 7-bladed b 50.2 55 0.0019 35.7 10.0 103 47-156 108-215 (302)
360 4fhn_B Nucleoporin NUP120; pro 48.1 50 0.0017 43.3 10.7 38 85-122 239-276 (1139)
361 2g8s_A Glucose/sorbosone dehyd 47.2 3.2E+02 0.011 30.0 19.1 56 658-713 269-331 (353)
362 3no0_A DNA gyrase subunit A; D 47.0 2.9E+02 0.0099 29.4 20.0 106 44-151 25-142 (276)
363 3no0_A DNA gyrase subunit A; D 45.8 3E+02 0.01 29.3 14.8 111 43-153 68-194 (276)
364 2wg3_C Hedgehog-interacting pr 45.6 1.7E+02 0.0057 34.0 13.6 29 594-622 15-44 (463)
365 4gq2_M Nucleoporin NUP120; bet 44.5 23 0.00079 45.5 6.5 38 85-122 237-274 (950)
366 2zwa_A Leucine carboxyl methyl 42.6 2.6E+02 0.0088 34.2 15.5 118 549-694 396-526 (695)
367 4gq2_M Nucleoporin NUP120; bet 41.7 2.7E+02 0.0092 35.5 15.8 39 661-699 237-275 (950)
368 1suu_A DNA gyrase subunit A; t 39.7 3.9E+02 0.014 28.9 19.0 101 52-152 6-130 (312)
369 4fhn_B Nucleoporin NUP120; pro 37.7 72 0.0025 41.8 9.7 31 736-766 247-277 (1139)
370 2uvk_A YJHT; unknown function, 36.5 2.6E+02 0.0089 30.3 13.1 54 550-613 65-128 (357)
371 3b7f_A Glycosyl hydrolase, BNR 35.6 2.2E+02 0.0076 31.6 12.4 104 43-148 55-201 (394)
372 3f7f_A Nucleoporin NUP120; nuc 33.6 39 0.0013 41.5 5.6 36 86-123 224-259 (729)
373 3kci_A Probable E3 ubiquitin-p 31.8 3.3E+02 0.011 30.3 13.0 99 55-153 63-185 (389)
374 1t3j_A Mitofusin 1; coiled coi 30.4 2.4E+02 0.0082 25.1 8.6 49 1084-1137 36-84 (96)
375 1xi4_A Clathrin heavy chain; a 29.7 5.1E+02 0.017 34.6 15.1 95 663-782 262-357 (1630)
376 3zwu_A Alkaline phosphatase PH 29.6 1E+02 0.0034 37.1 8.3 57 86-142 478-548 (592)
377 1wp5_A Topoisomerase IV; broke 29.5 5.8E+02 0.02 27.7 15.3 105 47-151 97-221 (323)
378 3hd7_A Vesicle-associated memb 27.4 1.9E+02 0.0064 25.4 7.6 47 1100-1146 9-55 (91)
379 1zi0_A DNA gyrase subunit A; b 27.3 5.7E+02 0.019 27.5 13.5 110 45-154 98-225 (307)
380 3uc1_A DNA gyrase subunit A; D 26.3 6.6E+02 0.023 27.3 22.1 107 45-151 44-172 (327)
381 3qhy_B Beta-lactamase inhibito 25.6 6.1E+02 0.021 26.7 15.8 28 303-334 219-246 (282)
382 3f7f_A Nucleoporin NUP120; nuc 25.3 48 0.0016 40.7 4.4 30 737-766 230-259 (729)
383 3l6v_A GYRA, DNA gyrase subuni 24.9 7.5E+02 0.025 27.5 14.9 110 45-154 102-264 (370)
384 1n7s_A Vesicle-associated memb 24.1 2.8E+02 0.0096 22.3 7.6 51 1098-1148 6-56 (63)
385 1urq_A M-tomosyn isoform; tran 24.1 2.9E+02 0.01 22.5 7.5 48 1099-1146 7-54 (63)
386 3b5n_A Synaptobrevin homolog 1 23.5 2.9E+02 0.0098 22.1 7.6 50 1098-1147 4-53 (61)
387 3kci_A Probable E3 ubiquitin-p 22.7 8E+02 0.027 27.0 14.3 106 45-152 107-238 (389)
388 4a9v_A PHOX; hydrolase, beta-p 21.9 1.8E+02 0.0061 34.7 8.2 58 85-142 477-548 (592)
389 1sfc_A VAMP 2, protein (synapt 21.4 2.8E+02 0.0096 24.6 7.6 47 1100-1146 34-80 (96)
390 3b5n_C Protein transport prote 20.9 3.5E+02 0.012 22.5 7.5 47 1099-1145 22-68 (70)
391 1gl2_A Endobrevin; membrane pr 20.1 3.5E+02 0.012 21.9 7.6 51 1098-1148 11-61 (65)
392 1txp_A HnRNP C, heterogeneous 20.0 51 0.0017 22.1 1.7 17 1104-1120 10-26 (28)
No 1
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-67 Score=683.33 Aligned_cols=758 Identities=16% Similarity=0.176 Sum_probs=519.6
Q ss_pred cCCCCcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeE
Q 001109 28 SKDFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEI 107 (1155)
Q Consensus 28 ~~~~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I 107 (1155)
++.|+++..+++||++.|+++||+|+|++||+|+.||+|+||+..+.+.+..+.+..+|.+|+|+| +.+|++++.|++|
T Consensus 3 ~~~~~~~~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v 81 (902)
T 2oaj_A 3 NKIFSLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTV 81 (902)
T ss_dssp CTTEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEE
T ss_pred hheeeeccccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeE
Confidence 568899999999999999999999999999999999999999999988888877888999999999 6799999999999
Q ss_pred EEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccc
Q 001109 108 QLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHI 187 (1155)
Q Consensus 108 ~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~ 187 (1155)
+|||+++++++.++..++.|++++|+|++++|++|+.||+|++|+++. +++. +|.++.... . .
T Consensus 82 ~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~--~~~~--~~~i~~~~~-----------~--~ 144 (902)
T 2oaj_A 82 YVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR--DQLS--SFKLDNLQK-----------S--S 144 (902)
T ss_dssp EEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTT--TEEE--EEEECCHHH-----------H--H
T ss_pred EEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCC--Cccc--cceeccccc-----------c--c
Confidence 999999999999988778999999999999999999999999997654 3322 233221000 0 0
Q ss_pred cccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEE
Q 001109 188 QREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLV 267 (1155)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~ 267 (1155)
. . . ..+..+|.+ ++|+|++. ..|++|+.||.| |||+.+++.+..
T Consensus 145 ~---~----------------~----~~h~~~V~s-----l~~sp~~~-------~~l~~g~~dg~v-lWd~~~~~~~~~ 188 (902)
T 2oaj_A 145 F---F----------------P----AARLSPIVS-----IQWNPRDI-------GTVLISYEYVTL-TYSLVENEIKQS 188 (902)
T ss_dssp T---C----------------S----SSCCCCCCE-----EEEETTEE-------EEEEEECSSCEE-EEETTTTEEEEE
T ss_pred c---c----------------c----ccCCCCeEE-----EEEccCCC-------CEEEEEeCCCcE-EEECCCCceEEE
Confidence 0 0 0 002345555 99999753 579999999999 999999988765
Q ss_pred ecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccc-ccc-CC
Q 001109 268 RGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKD-WKS-EN 345 (1155)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~-~~~-~~ 345 (1155)
... ..+.++...... . ....+|...|++++|+ |||.+||+|+.||+|++||+.++..... ... ..
T Consensus 189 ~~~-------~~~~g~~~~~~~---~--~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~ 255 (902)
T 2oaj_A 189 FIY-------ELPPFAPGGDFS---E--KTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDANSGHMIMARTVFETE 255 (902)
T ss_dssp ECC-------CBCTTCCCSTTC---C--CTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSC
T ss_pred Eec-------ccCCcCCCcccc---c--ccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCcEEEEEeecccc
Confidence 321 111111110000 0 0001246789999999 9999999999999999999988654210 000 00
Q ss_pred CCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCC-cceEEEEEccCCcc------------ccccee
Q 001109 346 SSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGS-EEVLTMLYLNWSSR------------IESLKC 412 (1155)
Q Consensus 346 ~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~-~~~ltvl~l~~~~~------------~~~~~~ 412 (1155)
...+..........+..+|..++|++.. +++++.++++|+.+.+. .+.+.+|.++.... ....++
T Consensus 256 ~~~~~~~~~~~~~~~~~~V~~v~w~~~~--~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 333 (902)
T 2oaj_A 256 INVPQPDYIRDSSTNAAKISKVYWMCEN--NPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQ 333 (902)
T ss_dssp TTSCCTTCCCCCSSCCCEEEEEEEEECS--STTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSE
T ss_pred cCCCCCcCCCCCccccCCeeEEEEEecC--CCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccc
Confidence 0000000000000245689999997621 12345778888665322 24676766432100 001112
Q ss_pred ceeeeecCCCceeEEEEecCCC----CCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcc
Q 001109 413 IGRVDLERKGSFVDMVLLPNGM----NESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHM 488 (1155)
Q Consensus 413 ~~~~~l~~~~~v~d~~~~~~~~----~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~I 488 (1155)
...+.+.+.+.+.++.++++.. +.+++..+++++.+|+|++||..... ...+....+..+..|.+.|
T Consensus 334 ~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~---------~~~~~~~~~~~l~~~~~~v 404 (902)
T 2oaj_A 334 MKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGI---------FTDKASLFPQNLSWLRPLA 404 (902)
T ss_dssp EEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCC---------EECCGGGSCGGGTTBTTBE
T ss_pred eEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCC---------cccccccCCCcccccCCCe
Confidence 2233345578889999887422 34566688888999999999964211 1111223345677888999
Q ss_pred eEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeC
Q 001109 489 TVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDA 568 (1155)
Q Consensus 489 t~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~ 568 (1155)
+++++++.... .|....... ....|++.||...+..+ +|+|++++|+||+.||+||+||+
T Consensus 405 ~~~~~s~~~~~-----~w~~~~~~~--------------~~~~~~l~G~~~~v~sv-~~spdg~~laSgs~DgtVrlWd~ 464 (902)
T 2oaj_A 405 TTSMAASVPNK-----LWLGALSAA--------------QNKDYLLKGGVRTKRQK-LPAEYGTAFITGHSNGSVRIYDA 464 (902)
T ss_dssp EEEEEEEEEHH-----HHHHHHHTT--------------BCCCCSCCCSBCCCCCC-CCCSEEEEEEEEETTSEEEEEES
T ss_pred eEEEEEEcCHH-----HHHHHHhcc--------------cCCCCcccCCcCCCCcc-cccccCcEEEEecCCCcEEEEEC
Confidence 99998765432 344322211 12246788887766666 89999999999999999999999
Q ss_pred CCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccc----------ceee----ec
Q 001109 569 TYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEE----------TLNL----VT 634 (1155)
Q Consensus 569 ~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~----------~~~~----v~ 634 (1155)
.++.+.....+...+......+|..+|++|+|+|||++||+|+.||+|+||++.++...+ .+.+ +.
T Consensus 465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 887532100010000000012788899999999999999999999999999998763210 0111 11
Q ss_pred cCCceEEEecC------CCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEec--cCC-CCCC
Q 001109 635 ETGKEVHILPG------GDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITD--SLS-NSNS 705 (1155)
Q Consensus 635 ~~~~~~~~~~~------~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~--~~~-~h~~ 705 (1155)
.++.....+.. ..|++|+.++.+|.++|++|+||||| +||+|+.||+|+|||++++.+++... .+. +|.+
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~ 623 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA 623 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccccc
Confidence 11111111111 22467788899999999999999999 99999999999999999988876422 344 8999
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC---CCCceeeeeecccC---CCceEEEEEE
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS---TTGHILFSRSIHHQ---ESNAIYMCII 779 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~---~tG~~l~~~~~~~~---~~~al~~~~l 779 (1155)
.|++|+|+..... ++++++++|++|+.|++|++||+ .+|+++..+.-|.. ...++.+..+
T Consensus 624 ~V~sv~Fs~~~~~--------------~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~ 689 (902)
T 2oaj_A 624 CVTCIEFVIMEYG--------------DDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAF 689 (902)
T ss_dssp CEEEEEEEEEECT--------------TSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEE
T ss_pred ceEEEEEEEEecC--------------CCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeE
Confidence 9999999821110 11144699999999999999998 88998877754432 3344455544
Q ss_pred eCCCCCC-cccccccccCCCCCCCCCCCCCcCCCCCCCCCcccccccccccchhhhhccceEEEEEeccceeeecccccc
Q 001109 780 EGGNFFS-ETSSEKQSLNTPQNSKATSEPDQTNANTGSDPVVAELETSTEATYLERIFEHLFVLLCYEDALWLYPLKSLI 858 (1155)
Q Consensus 780 d~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llc~e~~~~~ysl~~~~ 858 (1155)
+...... ....+.+ ....++...+.++|+|+|+.|+||++++
T Consensus 690 ~~~~~~~~~a~~~~~-----------------------------------~~l~~~~~~~~~~l~~~~~~ir~~~~~~-- 732 (902)
T 2oaj_A 690 SKETKSSCLATIPKM-----------------------------------QNLSKGLCIPGIVLITGFDDIRLITLGK-- 732 (902)
T ss_dssp ETTTCCBCBCBHHHH-----------------------------------HGGGGTCCCCEEEEEECSSEEEEECTTC--
T ss_pred ecCCCCcccCCHHHH-----------------------------------hccCCCCCCCeEEEEEeccceEEEeCcc--
Confidence 4221100 0000000 0111223358899999999999999998
Q ss_pred ccccceeEEeeccCCccceee--ee------eCCceeEEEEEeecCcEEEeecCCcccccccccccccccccccCcceee
Q 001109 859 QGHTDSIHKVNLLKPCCWTTS--FK------KNEKECGLVVLYQTGDIEIRVLPYLEVGGQTSLMSLLRWNYKTNMEETL 930 (1155)
Q Consensus 859 qg~~~~~~k~k~~~~~~~~~~--~~------~~~~~~~l~~~~~~G~ieirslp~l~~~~~~s~~~~~~~~~~~~~~~~~ 930 (1155)
.|+++|. +..+||++++ |. .+.++++|++++++|.|+|+|||+|+.+++.++..++..+ +.+..
T Consensus 733 ---~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~~----~~~~~ 804 (902)
T 2oaj_A 733 ---SKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAAK----YITES 804 (902)
T ss_dssp ---CCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCHH----HHTTC
T ss_pred ---ccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCcccccc----cccce
Confidence 3777766 7888999998 55 4578999999999999999999999999988776544443 34566
Q ss_pred eecCCCcEEEEcC
Q 001109 931 CSSDSGEIVLVDF 943 (1155)
Q Consensus 931 ~~s~~g~~~lvng 943 (1155)
|++.+|+++...+
T Consensus 805 ~~~~~G~~~~~~~ 817 (902)
T 2oaj_A 805 SVLRNGDIAIRVS 817 (902)
T ss_dssp EECTTSCEEEECS
T ss_pred EEcCCCCEEEEeC
Confidence 9999999955444
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.1e-49 Score=491.20 Aligned_cols=526 Identities=13% Similarity=0.117 Sum_probs=380.4
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCcee
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRIT 118 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~ 118 (1155)
.||.+.|++|||+|||++||+|+.||+|+||+..+........|..+|.+|+|+||+.+|++++.|++|+|||+ +++++
T Consensus 13 ~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~ 91 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLL 91 (577)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEE
Confidence 69999999999999999999999999999999765433333457889999999999999999999999999996 67788
Q ss_pred eeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccc
Q 001109 119 STLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFN 197 (1155)
Q Consensus 119 ~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 197 (1155)
.++..| +.|++++|+|++++|++++.|+.+++|+..... .. ...... ..+..+.++|+.......
T Consensus 92 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~--~~--~~~~~~-----~~v~~~~~~~~~~~~~~~----- 157 (577)
T 2ymu_A 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQ--TLTGHS-----SSVWGVAFSPDGQTIASA----- 157 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE--EE--EECCCS-----SCEEEEEECTTSSCEEEE-----
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce--ee--eccCCC-----CceeeeeeecCCccceec-----
Confidence 888876 789999999999999999999999999754322 11 001111 112356677765322211
Q ss_pred cceeeecCCCCCCCcc---cccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccc
Q 001109 198 ASLLFYCMPPDESGFI---DFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQ 274 (1155)
Q Consensus 198 ~~~~~~~~~~~~~~~~---~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~ 274 (1155)
.......++....... ..+.. .|..+.++|++ ++|++++.||.|++||.. ++.+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~--------~~l~~~~~d~~v~~w~~~-~~~~~~~~----- 218 (577)
T 2ymu_A 158 SDDKTVKLWNRNGQLLQTLTGHSS-----SVWGVAFSPDG--------QTIASASDDKTVKLWNRN-GQLLQTLT----- 218 (577)
T ss_dssp ETTSEEEEECTTSCEEEEEECCSS-----CEEEEEECTTS--------SCEEEEETTSEEEEECTT-SCEEEEEE-----
T ss_pred ccccceeccccceeeeeeccCCCc-----ceeeeeecCCC--------CEEEEEcCCCEEEEEeCC-CcEEEEEe-----
Confidence 0000111111110000 01122 34459999974 569999999999999964 45444311
Q ss_pred cccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCccccc
Q 001109 275 LKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQ 354 (1155)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~ 354 (1155)
.|...|.+++|+ |||++|++|+.||.|++||...... ..
T Consensus 219 -------------------------~~~~~v~~~~~s-~dg~~l~~~~~d~~i~~w~~~~~~~-------------~~-- 257 (577)
T 2ymu_A 219 -------------------------GHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNGQLL-------------QT-- 257 (577)
T ss_dssp -------------------------CCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEE-------------EE--
T ss_pred -------------------------cCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEeCCCCEE-------------EE--
Confidence 146789999999 9999999999999999999643211 11
Q ss_pred ccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCC
Q 001109 355 LSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGM 434 (1155)
Q Consensus 355 l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~ 434 (1155)
...|..+|..+.|++ ++..+++++.+ +.+.+|+.+... + .....+.+++..+.+.|++.
T Consensus 258 --~~~~~~~v~~v~~~~-------d~~~l~~~~~d----~~i~~w~~~~~~----~----~~~~~h~~~v~~~~~~~~~~ 316 (577)
T 2ymu_A 258 --LTGHSSSVNGVAFRP-------DGQTIASASDD----KTVKLWNRNGQL----L----QTLTGHSSSVWGVAFSPDGQ 316 (577)
T ss_dssp --ECCCSSCEEEEEECT-------TSSEEEEEETT----SCEEEEETTSCE----E----EEECCCSSCEEEEEECTTSS
T ss_pred --EecCCCCEEEEEEcC-------CCCEEEEEeCC----CEEEEEeCCCcE----E----EEEecCCCCeEEEEECCCCC
Confidence 124667899998864 45566666654 568887654321 0 12234567788888877553
Q ss_pred CCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhc
Q 001109 435 NESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAK 514 (1155)
Q Consensus 435 ~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~ 514 (1155)
.+++.+.+|.+++||.... ....+..|...|+++++++++.. ++. ...
T Consensus 317 ------~l~t~~~d~~i~~w~~~~~-----------------~~~~~~~~~~~v~~~~~s~~g~~-l~~--------~~~ 364 (577)
T 2ymu_A 317 ------TIASASDDKTVKLWNRNGQ-----------------HLQTLTGHSSSVWGVAFSPDGQT-IAS--------ASD 364 (577)
T ss_dssp ------EEEEEETTSCEEEEETTSC-----------------EEEEECCCSSCEEEEEECTTSSE-EEE--------EET
T ss_pred ------EEEEEeCCCeEEEEeCCCC-----------------eeEEEeCCCCCEEEEEECCCCCE-EEE--------EeC
Confidence 7888899999999996421 12344568888899888765433 110 000
Q ss_pred cccCCCCCccccCCCccCc--------ccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCcc
Q 001109 515 VRASHTPSTQLTGSTTKWP--------LTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGI 586 (1155)
Q Consensus 515 ~~~~~~~s~~~~~~~~~w~--------l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i 586 (1155)
. .....|. +.++...+..+ +|+|++++|++|+.|++|++||..... +..+
T Consensus 365 d-----------g~v~~~~~~~~~~~~~~~~~~~v~~~-~~s~dg~~l~~~~~d~~v~~~~~~~~~---~~~~------- 422 (577)
T 2ymu_A 365 D-----------KTVKLWNRNGQLLQTLTGHSSSVRGV-AFSPDGQTIASASDDKTVKLWNRNGQL---LQTL------- 422 (577)
T ss_dssp T-----------SEEEEEETTCCEEEEEECCSSCEEEE-EECTTSSCEEEEETTSEEEEECTTCCE---EEEE-------
T ss_pred C-----------CEEEEEcCCCCEEEEecCCCCCeEEE-EECCCCCEEEEEeCCCEEEEEeCCCCE---EEEe-------
Confidence 0 0011121 23333334455 899999999999999999999975432 2222
Q ss_pred ccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEE
Q 001109 587 RTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLK 666 (1155)
Q Consensus 587 ~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtsla 666 (1155)
.+|..+|++++|+||+++||+++.||.|++|+.... +...+.+|...|++++
T Consensus 423 --~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~--------------------------~~~~~~~~~~~v~~~~ 474 (577)
T 2ymu_A 423 --TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--------------------------LLQTLTGHSSSVRGVA 474 (577)
T ss_dssp --ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC--------------------------EEEEEECCSSCEEEEE
T ss_pred --cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC--------------------------EEEEEcCCCCCEEEEE
Confidence 268889999999999999999999999999996542 2346688999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC
Q 001109 667 FSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK 746 (1155)
Q Consensus 667 fSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~ 746 (1155)
|+|||++||+|+.|++|+|||. ++.++... .+|..+|.+|+|+ ||+++|++++.
T Consensus 475 ~spd~~~las~~~d~~i~iw~~-~~~~~~~~---~~h~~~v~~l~~s----------------------~dg~~l~s~~~ 528 (577)
T 2ymu_A 475 FSPDGQTIASASDDKTVKLWNR-NGQLLQTL---TGHSSSVRGVAFS----------------------PDGQTIASASD 528 (577)
T ss_dssp ECTTSCEEEEEETTSEEEEEET-TSCEEEEE---ECCSSCEEEEEEC----------------------TTSSCEEEEET
T ss_pred EcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE---eCCCCCEEEEEEc----------------------CCCCEEEEEEC
Confidence 9999999999999999999996 45565543 4699999999999 89999999999
Q ss_pred CceEEEEECCCCceeeeeecccC
Q 001109 747 DAHIVVCDSTTGHILFSRSIHHQ 769 (1155)
Q Consensus 747 Dg~I~vwd~~tG~~l~~~~~~~~ 769 (1155)
|++|+|||. +|+++....-|..
T Consensus 529 dg~v~lwd~-~~~~~~~~~~h~~ 550 (577)
T 2ymu_A 529 DKTVKLWNR-NGQLLQTLTGHSS 550 (577)
T ss_dssp TSEEEEECT-TSCEEEEEECCSS
T ss_pred cCEEEEEeC-CCCEEEEEcCCCC
Confidence 999999995 6888888765543
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.3e-49 Score=488.69 Aligned_cols=519 Identities=13% Similarity=0.104 Sum_probs=354.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEE-cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc--
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLV-SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR-- 116 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~-~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~-- 116 (1155)
.+++.+.+++|+|+|++||+++ +++|+||+..+...... ..|...|.+++|+|+|.+|++++.|++|+|||+.+++
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce
Confidence 4466788999999999999998 56999999865443333 3578899999999999999999999999999997654
Q ss_pred eeeeecCC-CceeEEEEecCCCEEEEEeCCC--cEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccc
Q 001109 117 ITSTLPWE-SNITAFSVIFGTSYMYIGDEYG--MVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGK 193 (1155)
Q Consensus 117 ~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG--~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~ 193 (1155)
+..++..+ +.|++++|+|++++|++++.+. ...||.||... .. .. +.+
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~~--------~~------------------l~g- 145 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SN--------GN------------------LTG- 145 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BC--------BC------------------CCC-
T ss_pred eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--Cc--------ce------------------ecC-
Confidence 34566655 7899999999999999887653 23445556532 10 00 001
Q ss_pred cccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccc
Q 001109 194 AAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDL 273 (1155)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~ 273 (1155)
+...|. +++|+|+.. .+|++|+.|++|++||..+++++....
T Consensus 146 ----------------------h~~~v~-----~v~f~p~~~-------~~l~s~s~D~~v~lwd~~~~~~~~~l~---- 187 (611)
T 1nr0_A 146 ----------------------QARAMN-----SVDFKPSRP-------FRIISGSDDNTVAIFEGPPFKFKSTFG---- 187 (611)
T ss_dssp ----------------------CSSCEE-----EEEECSSSS-------CEEEEEETTSCEEEEETTTBEEEEEEC----
T ss_pred ----------------------CCCCce-----EEEECCCCC-------eEEEEEeCCCeEEEEECCCCeEeeeec----
Confidence 223344 499999854 369999999999999998887765421
Q ss_pred ccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccc
Q 001109 274 QLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKL 353 (1155)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl 353 (1155)
+|...|++++|+ |||++||+|+.||+|++||+.++..... +..-
T Consensus 188 --------------------------~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~~~~---------~~~~ 231 (611)
T 1nr0_A 188 --------------------------EHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGV---------FEDD 231 (611)
T ss_dssp --------------------------CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEE---------CBCT
T ss_pred --------------------------cccCceEEEEEC-CCCCEEEEEECCCcEEEEECCCCcEeee---------eccc
Confidence 157889999999 9999999999999999999987654221 0000
Q ss_pred cccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCccccccee---------------------
Q 001109 354 QLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKC--------------------- 412 (1155)
Q Consensus 354 ~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~--------------------- 412 (1155)
.+....|..+|..+.|++ ++.++++++.| +.+.+|++........+..
T Consensus 232 ~~~~~~h~~~V~~v~~sp-------dg~~l~s~s~D----~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 300 (611)
T 1nr0_A 232 SLKNVAHSGSVFGLTWSP-------DGTKIASASAD----KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 300 (611)
T ss_dssp TSSSCSSSSCEEEEEECT-------TSSEEEEEETT----SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred cccccccCCCEEEEEECC-------CCCEEEEEeCC----CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEE
Confidence 011225778999999975 45667777765 6788887642111100000
Q ss_pred ---------------ceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccC
Q 001109 413 ---------------IGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQY 477 (1155)
Q Consensus 413 ---------------~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~ 477 (1155)
.......+...+.++.+.|++ ..+++.+.+|.+++||...... .
T Consensus 301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg------~~l~s~s~D~~v~~Wd~~~~~~-------------~-- 359 (611)
T 1nr0_A 301 SANGFINFVNPELGSIDQVRYGHNKAITALSSSADG------KTLFSADAEGHINSWDISTGIS-------------N-- 359 (611)
T ss_dssp ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS------SEEEEEETTSCEEEEETTTCCE-------------E--
T ss_pred eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC------CEEEEEeCCCcEEEEECCCCce-------------e--
Confidence 001112455677777777654 3888999999999999753211 0
Q ss_pred CcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhcccc--C-----------CCC-CccccCC-----------CccC
Q 001109 478 PMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRA--S-----------HTP-STQLTGS-----------TTKW 532 (1155)
Q Consensus 478 ~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~-----------~~~-s~~~~~~-----------~~~w 532 (1155)
......|...|++++++++. .+++..+++.+....... . ..+ ...+.+. ...|
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~ 437 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred eecccCCcceEEEEEECCCC--cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence 01113477778888776322 122111110000000000 0 000 0000000 0000
Q ss_pred cccC------CCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCe
Q 001109 533 PLTG------GIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLN 606 (1155)
Q Consensus 533 ~l~g------g~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~ 606 (1155)
. .+ +.....++ +|+|++++||+|+.|++|++||+..+.+..+.. .+|...|++|+|+|||++
T Consensus 438 ~-~~~~~~~~~~~~v~~v-a~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~----------~~h~~~v~~v~fspdg~~ 505 (611)
T 1nr0_A 438 S-HGKLTEVPISYNSSCV-ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT----------IVHPAEITSVAFSNNGAF 505 (611)
T ss_dssp E-TTEEEEEECSSCEEEE-EECTTSCEEEEEETTSEEEEEEEETTEEEEEEE----------EECSSCEEEEEECTTSSE
T ss_pred e-CCceeeeecCCCceEE-EEeCCCCEEEEeCCCCeEEEEEccCCceeeeec----------cCCCCceEEEEECCCCCE
Confidence 0 00 00112234 899999999999999999999998765322222 167889999999999999
Q ss_pred EEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001109 607 LAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAML 686 (1155)
Q Consensus 607 Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lW 686 (1155)
||+++.|++|++|++...... +. ...+.+|.+.|++|+|||||++||+|+.|++|+||
T Consensus 506 las~s~d~~v~~w~~~~~~~~---------------~~-------~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW 563 (611)
T 1nr0_A 506 LVATDQSRKVIPYSVANNFEL---------------AH-------TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563 (611)
T ss_dssp EEEEETTSCEEEEEGGGTTEE---------------SC-------CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEcCCCCEEEEEcCCCCce---------------ee-------eeeeeecccceeEEEECCCCCEEEEEECCCcEEEE
Confidence 999999999999999762110 00 00124599999999999999999999999999999
Q ss_pred ecCCccE-EEEeccCCCC-CCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 687 DISTFSV-LFITDSLSNS-NSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 687 Di~~~~~-l~~~~~~~~h-~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
|+.++.. +.. .+.+| ...|.+++|+ ||++ |++++.|++|++||+
T Consensus 564 ~~~~~~~~~~~--~~~~h~~~~v~~v~fs----------------------~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 564 NMNKPSDHPII--IKGAHAMSSVNSVIWL----------------------NETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp ETTCTTSCCEE--ETTSSTTSCEEEEEEE----------------------ETTE-EEEEETTSCEEEEEC
T ss_pred ECCCcccccch--hhccCcccCeeEEEEc----------------------CCCE-EEEecCCCCEEEEec
Confidence 9988652 211 24579 8999999999 7888 999999999999996
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.1e-46 Score=464.33 Aligned_cols=515 Identities=13% Similarity=0.126 Sum_probs=372.6
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCcee
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRIT 118 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~ 118 (1155)
.||.+.|++|+|+|+|++||+|+.||+|+|||..+........|..+|.+++|+|++.+|++++.|+.+++|+.......
T Consensus 54 ~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~ 133 (577)
T 2ymu_A 54 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 133 (577)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE
T ss_pred eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee
Confidence 69999999999999999999999999999999766544444467889999999999999999999999999998766544
Q ss_pred eeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccccc
Q 001109 119 STLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNA 198 (1155)
Q Consensus 119 ~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 198 (1155)
........|.++.++|++..++.++.++.+++|..+.. ... ....+. ..+..+.|+|++.....+ ..+.
T Consensus 134 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~-----~~v~~~~~~~~~~~l~~~--~~d~ 202 (577)
T 2ymu_A 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQ--TLTGHS-----SSVWGVAFSPDGQTIASA--SDDK 202 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC--EEE--EEECCS-----SCEEEEEECTTSSCEEEE--ETTS
T ss_pred eccCCCCceeeeeeecCCccceecccccceecccccee--eee--eccCCC-----cceeeeeecCCCCEEEEE--cCCC
Confidence 44444588999999999999999999999988854332 111 011111 123367888876432211 0011
Q ss_pred ceeeecCCCCCCCcccc-cccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccccc
Q 001109 199 SLLFYCMPPDESGFIDF-IIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKT 277 (1155)
Q Consensus 199 ~~~~~~~~~~~~~~~~~-~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~ 277 (1155)
.+.++... ........ +.. .|.+++|+|+. ++|++++.||.|++||.. ++.+....
T Consensus 203 ~v~~w~~~-~~~~~~~~~~~~-----~v~~~~~s~dg--------~~l~~~~~d~~i~~w~~~-~~~~~~~~-------- 259 (577)
T 2ymu_A 203 TVKLWNRN-GQLLQTLTGHSS-----SVRGVAFSPDG--------QTIASASDDKTVKLWNRN-GQLLQTLT-------- 259 (577)
T ss_dssp EEEEECTT-SCEEEEEECCSS-----CEEEEEECTTS--------SCEEEEETTSCEEEECTT-SCEEEEEC--------
T ss_pred EEEEEeCC-CcEEEEEecCCC-----CEEEEEECCCC--------CEEEEEeCCCEEEEEeCC-CCEEEEEe--------
Confidence 22223211 00000011 123 34559999974 569999999999999965 44443311
Q ss_pred ccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccC
Q 001109 278 EIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSS 357 (1155)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~ 357 (1155)
.|...|++++|+ |||+.|++++.|+.|++||...... .. .
T Consensus 260 ----------------------~~~~~v~~v~~~-~d~~~l~~~~~d~~i~~w~~~~~~~-------------~~----~ 299 (577)
T 2ymu_A 260 ----------------------GHSSSVNGVAFR-PDGQTIASASDDKTVKLWNRNGQLL-------------QT----L 299 (577)
T ss_dssp ----------------------CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSCEE-------------EE----E
T ss_pred ----------------------cCCCCEEEEEEc-CCCCEEEEEeCCCEEEEEeCCCcEE-------------EE----E
Confidence 146789999999 9999999999999999999654211 01 1
Q ss_pred CCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCC
Q 001109 358 GNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNES 437 (1155)
Q Consensus 358 ~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~ 437 (1155)
..|..+|..++|++ ++..+++++.+ +.+.+|+++.... .....+..++..+.+.|++.
T Consensus 300 ~~h~~~v~~~~~~~-------~~~~l~t~~~d----~~i~~w~~~~~~~--------~~~~~~~~~v~~~~~s~~g~--- 357 (577)
T 2ymu_A 300 TGHSSSVWGVAFSP-------DGQTIASASDD----KTVKLWNRNGQHL--------QTLTGHSSSVWGVAFSPDGQ--- 357 (577)
T ss_dssp CCCSSCEEEEEECT-------TSSEEEEEETT----SCEEEEETTSCEE--------EEECCCSSCEEEEEECTTSS---
T ss_pred ecCCCCeEEEEECC-------CCCEEEEEeCC----CeEEEEeCCCCee--------EEEeCCCCCEEEEEECCCCC---
Confidence 24677899998864 45566666654 5688887654310 11233556777777776553
Q ss_pred CceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhcccc
Q 001109 438 HGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRA 517 (1155)
Q Consensus 438 ~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 517 (1155)
.+++...+|.+.+||.. .+....+..|...|++++|++++.. +++ +...
T Consensus 358 ---~l~~~~~dg~v~~~~~~-----------------~~~~~~~~~~~~~v~~~~~s~dg~~-l~~--------~~~d-- 406 (577)
T 2ymu_A 358 ---TIASASDDKTVKLWNRN-----------------GQLLQTLTGHSSSVRGVAFSPDGQT-IAS--------ASDD-- 406 (577)
T ss_dssp ---EEEEEETTSEEEEEETT-----------------CCEEEEEECCSSCEEEEEECTTSSC-EEE--------EETT--
T ss_pred ---EEEEEeCCCEEEEEcCC-----------------CCEEEEecCCCCCeEEEEECCCCCE-EEE--------EeCC--
Confidence 78888999999999953 1222345668889999999876543 111 0000
Q ss_pred CCCCCccccCCCccCc--------ccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccC
Q 001109 518 SHTPSTQLTGSTTKWP--------LTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTA 589 (1155)
Q Consensus 518 ~~~~s~~~~~~~~~w~--------l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~ 589 (1155)
.....|. +.++...+..+ +|+|++++|++++.|++|++||.....+ ..+ .
T Consensus 407 ---------~~v~~~~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~~~~~d~~v~~w~~~~~~~---~~~---------~ 464 (577)
T 2ymu_A 407 ---------KTVKLWNRNGQLLQTLTGHSSSVWGV-AFSPDDQTIASASDDKTVKLWNRNGQLL---QTL---------T 464 (577)
T ss_dssp ---------SEEEEECTTCCEEEEEECCSSCEEEE-EECTTSSEEEEEETTSEEEEEETTSCEE---EEE---------E
T ss_pred ---------CEEEEEeCCCCEEEEecCCCCCeEEE-EECCCCCEEEEEcCCCEEEEEECCCCEE---EEE---------c
Confidence 0111121 23343344445 8999999999999999999999765432 222 2
Q ss_pred CCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcC
Q 001109 590 TESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSN 669 (1155)
Q Consensus 590 gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp 669 (1155)
+|..+|++++|+||+++||+|+.||.|++|+.... +...+.+|.+.|++|+|||
T Consensus 465 ~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~--------------------------~~~~~~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 465 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------------------LLQTLTGHSSSVRGVAFSP 518 (577)
T ss_dssp CCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSC--------------------------EEEEEECCSSCEEEEEECT
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC--------------------------EEEEEeCCCCCEEEEEEcC
Confidence 68889999999999999999999999999996431 2356789999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCce
Q 001109 670 FGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAH 749 (1155)
Q Consensus 670 dg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~ 749 (1155)
||++||+|+.||+|+|||+. +.++... .+|.++|++|+|+ |||++|++++.|++
T Consensus 519 dg~~l~s~~~dg~v~lwd~~-~~~~~~~---~~h~~~v~~~~fs----------------------~dg~~l~s~~~D~~ 572 (577)
T 2ymu_A 519 DGQTIASASDDKTVKLWNRN-GQLLQTL---TGHSSSVWGVAFS----------------------PDGQTIASASSDKT 572 (577)
T ss_dssp TSSCEEEEETTSEEEEECTT-SCEEEEE---ECCSSCEEEEEEC----------------------TTSSCEEEEETTSC
T ss_pred CCCEEEEEECcCEEEEEeCC-CCEEEEE---cCCCCCEEEEEEc----------------------CCCCEEEEEeCCCE
Confidence 99999999999999999964 5665543 4799999999999 89999999999999
Q ss_pred EEEEE
Q 001109 750 IVVCD 754 (1155)
Q Consensus 750 I~vwd 754 (1155)
|++||
T Consensus 573 i~~Wd 577 (577)
T 2ymu_A 573 VKLWN 577 (577)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.6e-43 Score=469.82 Aligned_cols=498 Identities=14% Similarity=0.137 Sum_probs=358.0
Q ss_pred eeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC
Q 001109 36 TLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA 114 (1155)
Q Consensus 36 ~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t 114 (1155)
....||.+.|++++|+|+|++||+|+.||+|+||+..+.+.+... .|...|.+++|+|++.+|++++.|++|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 344699999999999999999999999999999999887766554 4788999999999999999999999999999999
Q ss_pred CceeeeecCC-CceeEEEEec--CCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccc
Q 001109 115 RRITSTLPWE-SNITAFSVIF--GTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREK 191 (1155)
Q Consensus 115 ~~~~~~l~~~-~~Vtsva~sp--d~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~ 191 (1155)
++++.++..| ..|++++|+| ++.++++|+.||.|++|+++... .. ..+.
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~--~~---~~~~----------------------- 740 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE--CR---NTMF----------------------- 740 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS--EE---EEEC-----------------------
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc--hh---heec-----------------------
Confidence 9999999877 7899999999 55689999999999999766532 11 0000
Q ss_pred cccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccc
Q 001109 192 GKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSK 271 (1155)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~ 271 (1155)
+ +...|.+ ++|+|++ ++|++++.||.|++||+.+++........
T Consensus 741 ~-----------------------h~~~v~~-----~~~sp~~--------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 784 (1249)
T 3sfz_A 741 G-----------------------HTNSVNH-----CRFSPDD--------ELLASCSADGTLRLWDVRSANERKSINVK 784 (1249)
T ss_dssp C-----------------------CSSCEEE-----EEECSST--------TEEEEEESSSEEEEEEGGGTEEEEEEECC
T ss_pred C-----------------------CCCCEEE-----EEEecCC--------CEEEEEECCCeEEEEeCCCCcccceeccc
Confidence 0 1233444 8999973 57999999999999999888765542110
Q ss_pred ccccccc---------cccCCCCCCCCCC--------------ccc--ccccccccCCccEEEEEecCCCeEEEEEcCCc
Q 001109 272 DLQLKTE---------IVDDPSKNAGHNL--------------SET--VSDNEQVEKEISSLCWASNDGSVLAVGYVDGD 326 (1155)
Q Consensus 272 ~~~~~~~---------~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~ 326 (1155)
....... +........+... ... ..-...|...|++++|+ |+|..+++|+.||.
T Consensus 785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~dg~ 863 (1249)
T 3sfz_A 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS-PYDHLAVIALSQYC 863 (1249)
T ss_dssp CCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC-SSTTEEEEECSSSC
T ss_pred ccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc-CCCCEEEEEeCCCe
Confidence 0000000 0000000000000 000 00001357889999999 99999999999999
Q ss_pred EEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcc
Q 001109 327 ILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSR 406 (1155)
Q Consensus 327 I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~ 406 (1155)
|++||+.++..... ...|..+|..+.|++ ++..+++++.+ +.+.+|++.....
T Consensus 864 v~vwd~~~~~~~~~----------------~~~h~~~v~~v~~sp-------dg~~l~s~s~d----g~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 864 VELWNIDSRLKVAD----------------CRGHLSWVHGVMFSP-------DGSSFLTASDD----QTIRVWETKKVCK 916 (1249)
T ss_dssp EEEEETTTTEEEEE----------------ECCCSSCEEEEEECT-------TSSEEEEEETT----SCEEEEEHHHHHS
T ss_pred EEEEEcCCCceeee----------------cCCCccceEEEEECC-------CCCEEEEEeCC----CeEEEEEccccce
Confidence 99999987643221 235778899999975 45556666654 5688876542110
Q ss_pred ccccee------------------------------ceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecC
Q 001109 407 IESLKC------------------------------IGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDR 456 (1155)
Q Consensus 407 ~~~~~~------------------------------~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~ 456 (1155)
...+.. ...........+..+.+.|++ ..+++.+.+|.+.+||.
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g------~~l~~g~~~g~i~i~d~ 990 (1249)
T 3sfz_A 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL------EYVAFGDEDGAIKIIEL 990 (1249)
T ss_dssp CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS------SEEEEEETTSCCEEEET
T ss_pred eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC------CEEEEEcCCCCEEEEEc
Confidence 000000 000111122334444444433 36777778888888875
Q ss_pred CCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccC
Q 001109 457 PRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTG 536 (1155)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~g 536 (1155)
... ........|...|
T Consensus 991 ~~~----------------~~~~~~~~h~~~v------------------------------------------------ 1006 (1249)
T 3sfz_A 991 PNN----------------RVFSSGVGHKKAV------------------------------------------------ 1006 (1249)
T ss_dssp TTT----------------SCEEECCCCSSCC------------------------------------------------
T ss_pred CCC----------------ceeeecccCCCce------------------------------------------------
Confidence 411 1111111222222
Q ss_pred CCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeE
Q 001109 537 GIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLV 616 (1155)
Q Consensus 537 g~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V 616 (1155)
.++ +|+|++++|++|+.||+|++||+.++... . ..+|...|.+++|+|++ .+++++.||.|
T Consensus 1007 -----~~l-~~s~dg~~l~s~~~dg~i~vwd~~~~~~~---~---------~~~~~~~v~~~~~~~~~-~l~~~~~dg~v 1067 (1249)
T 3sfz_A 1007 -----RHI-QFTADGKTLISSSEDSVIQVWNWQTGDYV---F---------LQAHQETVKDFRLLQDS-RLLSWSFDGTV 1067 (1249)
T ss_dssp -----CCE-EECSSSSCEEEECSSSBEEEEETTTTEEE---C---------CBCCSSCEEEEEECSSS-EEEEEESSSEE
T ss_pred -----EEE-EECCCCCEEEEEcCCCEEEEEECCCCceE---E---------EecCCCcEEEEEEcCCC-cEEEEECCCcE
Confidence 123 67788899999999999999999887632 1 12677899999999976 57889999999
Q ss_pred EEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEE
Q 001109 617 WLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFI 696 (1155)
Q Consensus 617 ~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~ 696 (1155)
++||+.++.. ...+.+|.+.|++++|+|||++||+|+.||+|++||+.++..+..
T Consensus 1068 ~vwd~~~~~~-------------------------~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A 1068 KVWNVITGRI-------------------------ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp EEEETTTTCC-------------------------CEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC
T ss_pred EEEECCCCce-------------------------eEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee
Confidence 9999987542 245688999999999999999999999999999999999887643
Q ss_pred eccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 697 TDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 697 ~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
+.+|..+|.+++|+ |||++|++++.||+|++||+.+|+++...
T Consensus 1123 ---l~~h~~~v~~~~~s----------------------~dg~~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1123 ---LKGHNGCVRCSAFS----------------------LDGILLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp ---CCCCSSCEEEEEEC----------------------SSSSEEEEEETTSCCCEEESSSSCCCCCC
T ss_pred ---eccCCCcEEEEEEC----------------------CCCCEEEEEeCCCEEEEEECCCCceEEEe
Confidence 45799999999999 89999999999999999999999887664
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-42 Score=429.81 Aligned_cols=503 Identities=14% Similarity=0.111 Sum_probs=341.1
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc----eEEE-EcCCCCC-EEEEEEEc--CCcEEEEEecCCeEEEE
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI----EGLL-VSPKQLA-FKHLEFLQ--NQGFLVSISSGNEIQLW 110 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~----~~~~-~~~~~~~-V~~l~Fs~--dg~~LvS~s~Dg~I~vW 110 (1155)
.+|++.|++++|+|+|++||+|+ ++.|+||+..+. +... ...|... |.+++|+| ++.+|++++.|++|+||
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 47889999999999999999998 789999998765 4333 3457788 99999999 99999999999999999
Q ss_pred ECCCC--------ceeeeecCC-CceeEEEEecCCCEEEEEeCC----CcEEEEEecCCCceeeccceeccCCceeeece
Q 001109 111 DLEAR--------RITSTLPWE-SNITAFSVIFGTSYMYIGDEY----GMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNH 177 (1155)
Q Consensus 111 Dl~t~--------~~~~~l~~~-~~Vtsva~spd~~~l~~G~~d----G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 177 (1155)
|+.++ .....+..+ ..|++++|+|++++|++++.+ +.|++ ||... .. ..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~--~d~~~--~~---~~~~--------- 157 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS--WDSGN--SL---GEVS--------- 157 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE--TTTCC--EE---EECC---------
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEE--EECCC--cc---eeee---------
Confidence 99855 566677654 789999999999999999987 55554 45422 11 0000
Q ss_pred eEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEE
Q 001109 178 LLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILW 257 (1155)
Q Consensus 178 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lW 257 (1155)
+ +...+.+ +.|+|++. .++++++.||.|++|
T Consensus 158 --------------~-----------------------~~~~v~~-----~~~~~~~~-------~~l~~~~~d~~v~vw 188 (615)
T 1pgu_A 158 --------------G-----------------------HSQRINA-----CHLKQSRP-------MRSMTVGDDGSVVFY 188 (615)
T ss_dssp --------------S-----------------------CSSCEEE-----EEECSSSS-------CEEEEEETTTEEEEE
T ss_pred --------------c-----------------------CCccEEE-----EEECCCCC-------cEEEEEeCCCcEEEE
Confidence 0 1233444 99999854 379999999999999
Q ss_pred EccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccC---CccEEEEEecC-CCeEEEEEcCCcEEEEEcC
Q 001109 258 DVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEK---EISSLCWASND-GSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 258 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~V~sl~~s~pd-G~~lasg~~DG~I~lWd~~ 333 (1155)
|+.+++.+..... |.. .|++++|+ |+ |++|++|+.||.|++||+.
T Consensus 189 d~~~~~~~~~~~~------------------------------~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 189 QGPPFKFSASDRT------------------------------HHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp ETTTBEEEEEECS------------------------------SSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETT
T ss_pred eCCCcceeeeecc------------------------------cCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECC
Confidence 9999888765211 345 79999999 99 9999999999999999998
Q ss_pred CCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceec
Q 001109 334 AAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCI 413 (1155)
Q Consensus 334 s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~ 413 (1155)
++..... +......|..+|..+.|+ ++.++++++.+ ..+.+|++.......
T Consensus 238 ~~~~~~~------------~~~~~~~~~~~v~~~~~~--------~~~~l~~~~~d----~~i~~wd~~~~~~~~----- 288 (615)
T 1pgu_A 238 SGEFLKY------------IEDDQEPVQGGIFALSWL--------DSQKFATVGAD----ATIRVWDVTTSKCVQ----- 288 (615)
T ss_dssp TCCEEEE------------CCBTTBCCCSCEEEEEES--------SSSEEEEEETT----SEEEEEETTTTEEEE-----
T ss_pred CCCEeEE------------ecccccccCCceEEEEEc--------CCCEEEEEcCC----CcEEEEECCCCcEEE-----
Confidence 7643221 100001467789999884 34556666554 678888765321111
Q ss_pred eeeeec---CCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceE
Q 001109 414 GRVDLE---RKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTV 490 (1155)
Q Consensus 414 ~~~~l~---~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~ 490 (1155)
.+..+ ....+..+.+ +++ ..+++.+.+|.+++||.... .....+..|...|++
T Consensus 289 -~~~~~~~~~~~~~~~~~~-~~~------~~l~~~~~~g~i~~~d~~~~----------------~~~~~~~~~~~~v~~ 344 (615)
T 1pgu_A 289 -KWTLDKQQLGNQQVGVVA-TGN------GRIISLSLDGTLNFYELGHD----------------EVLKTISGHNKGITA 344 (615)
T ss_dssp -EEECCTTCGGGCEEEEEE-EET------TEEEEEETTSCEEEEETTEE----------------EEEEEECCCSSCEEE
T ss_pred -EEcCCCCcccCceeEEEe-CCC------CeEEEEECCCCEEEEECCCC----------------cEEEEEeCCCCCEEE
Confidence 11111 1123333333 222 37888889999999996521 112233445555555
Q ss_pred EEEeee----cCCCchhHHHHHHHHhhcccc-------C--CC--CCccccCCCccCcccCCCC----------------
Q 001109 491 GKLCMV----CRDGKLSVELSKTLSAAKVRA-------S--HT--PSTQLTGSTTKWPLTGGIP---------------- 539 (1155)
Q Consensus 491 ~~~~~~----~~~~~~s~~~~~~~~~~~~~~-------~--~~--~s~~~~~~~~~w~l~gg~~---------------- 539 (1155)
+++ ++ ..++.+ ..|++........ . .. .+.........|.+..+..
T Consensus 345 ~~~-~~l~~~~~dg~i--~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~ 421 (615)
T 1pgu_A 345 LTV-NPLISGSYDGRI--MEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTA 421 (615)
T ss_dssp EET-TTTEEEETTSCE--EETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEE
T ss_pred EEe-cCcEEECCCCeE--EEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEE
Confidence 554 22 000000 0000000000000 0 00 0000111233344322100
Q ss_pred --------------------------CcccccccCCcCcEEEEEEC-CCcEEEEeCCCCCeeeeeeeCCCcCccccCCCC
Q 001109 540 --------------------------CQLHDAEDYLVERLYIAGYR-DGSTRIWDATYPTLSLIHVFGSELPGIRTATES 592 (1155)
Q Consensus 540 --------------------------~~~~l~~~s~~~~lLaTgs~-DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~ 592 (1155)
....+ +++ ++++++|+. ||.|++||+..+.+.. .. ..+|.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~-~~---------~~~~~ 488 (615)
T 1pgu_A 422 VLTNDDDLLILQSFTGDIIKSVRLNSPGSAV-SLS--QNYVAVGLEEGNTIQVFKLSDLEVSF-DL---------KTPLR 488 (615)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSCEEEE-EEC--SSEEEEEETTTSCEEEEETTEEEEEE-EC---------SSCCS
T ss_pred EEeCCCceEEEeccCCceeeecccCCCceEE-EEc--CCEEEEeecCCCeEEEEECCCccccc-cc---------cCCcc
Confidence 00011 222 567777777 7888888776654211 11 23788
Q ss_pred CCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeec-CCCCeEEEEEcC--
Q 001109 593 ESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSV-LNSPICNLKFSN-- 669 (1155)
Q Consensus 593 ~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~-h~~~VtslafSp-- 669 (1155)
.+|++++|+|++++||+|+.||.|++|++..... ...+.+ |...|++++|+|
T Consensus 489 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------~~~~~~~h~~~v~~~~~sp~~ 543 (615)
T 1pgu_A 489 AKPSYISISPSETYIAAGDVMGKILLYDLQSREV-------------------------KTSRWAFRTSKINAISWKPAE 543 (615)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-------------------------EECCSCCCSSCEEEEEECCCC
T ss_pred CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-------------------------eeEeecCCCCceeEEEEcCcc
Confidence 8999999999999999999999999999987432 234456 999999999999
Q ss_pred --------CCCEEEEEeCCCcEEEEecCCc-cEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcE
Q 001109 670 --------FGARLAVGFECSQVAMLDISTF-SVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKET 740 (1155)
Q Consensus 670 --------dg~~LAsGs~Dg~V~lWDi~~~-~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~ 740 (1155)
++++||+|+.||+|+|||+.++ .++.. +.+|..+|.+|+|+ ||++
T Consensus 544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~h~~~v~~l~~s----------------------~~~~- 597 (615)
T 1pgu_A 544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA---LNAHKDGVNNLLWE----------------------TPST- 597 (615)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTTCCEEE---TTSSTTCEEEEEEE----------------------ETTE-
T ss_pred ccccccccCCCEEEEEcCCCcEEEEECCCCceechh---hhcCccceEEEEEc----------------------CCCC-
Confidence 9999999999999999999987 55543 46799999999999 8899
Q ss_pred EEEEeCCceEEEEECCCC
Q 001109 741 LFFMTKDAHIVVCDSTTG 758 (1155)
Q Consensus 741 L~s~s~Dg~I~vwd~~tG 758 (1155)
|++++.|++|++||++++
T Consensus 598 l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 598 LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp EEEEETTSCEEEEEEC--
T ss_pred eEEecCCceEEEEeeecC
Confidence 999999999999998763
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-41 Score=423.05 Aligned_cols=488 Identities=13% Similarity=0.086 Sum_probs=310.6
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce--EE-EEcCCCCCEEEEEEEcCCcEEEEEecCC----eEEEEE
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE--GL-LVSPKQLAFKHLEFLQNQGFLVSISSGN----EIQLWD 111 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~--~~-~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg----~I~vWD 111 (1155)
.||...|++++|+|+|++||+|+.||+|+|||..+.+ .. ....|..+|.+++|+|++.+|++++.++ +|++||
T Consensus 56 ~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence 5999999999999999999999999999999975322 22 2234678999999999999999988653 566666
Q ss_pred CCCCceeeeecCC-CceeEEEEecCCC-EEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeec-eeEeeEeccccc
Q 001109 112 LEARRITSTLPWE-SNITAFSVIFGTS-YMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFN-HLLLEFCPNHIQ 188 (1155)
Q Consensus 112 l~t~~~~~~l~~~-~~Vtsva~spd~~-~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~-~~~l~~~p~~~~ 188 (1155)
+++...++.+| ..|++++|+|++. .|++|+.|++|++|+... +++. ..+.. +.. +.+++|+||+..
T Consensus 136 --~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~--~~~~---~~l~~----H~~~V~~v~fspdg~~ 204 (611)
T 1nr0_A 136 --TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--FKFK---STFGE----HTKFVHSVRYNPDGSL 204 (611)
T ss_dssp --TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--BEEE---EEECC----CSSCEEEEEECTTSSE
T ss_pred --CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC--CeEe---eeecc----ccCceEEEEECCCCCE
Confidence 57777788877 7899999999987 599999999999996543 3322 11111 122 338999999743
Q ss_pred ccccccccccceeeecCCCCCCCccc--------ccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEcc
Q 001109 189 REKGKAAFNASLLFYCMPPDESGFID--------FIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVS 260 (1155)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~ 260 (1155)
...+ ..+..+.++.+......... .+.. .|.+++|+|++ ++|++++.||+|+|||+.
T Consensus 205 las~--s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~-----~V~~v~~spdg--------~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 205 FAST--GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG-----SVFGLTWSPDG--------TKIASASADKTIKIWNVA 269 (611)
T ss_dssp EEEE--ETTSCEEEEETTTCCEEEECBCTTSSSCSSSS-----CEEEEEECTTS--------SEEEEEETTSEEEEEETT
T ss_pred EEEE--ECCCcEEEEECCCCcEeeeeccccccccccCC-----CEEEEEECCCC--------CEEEEEeCCCeEEEEeCC
Confidence 2211 11224444443322111111 1233 34559999974 679999999999999999
Q ss_pred CCeEEEEecccccccccc---c-ccCCC----CCCCC------CCcccccccccccCCccEEEEEecCCCeEEEEEcCCc
Q 001109 261 EDKVVLVRGSKDLQLKTE---I-VDDPS----KNAGH------NLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGD 326 (1155)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~---~-~~~~~----~~~~~------~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~ 326 (1155)
+++++........ .... + ..+.. ...+. ..........+|...|++++|+ |||++|++|+.||+
T Consensus 270 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s-pdg~~l~s~s~D~~ 347 (611)
T 1nr0_A 270 TLKVEKTIPVGTR-IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS-ADGKTLFSADAEGH 347 (611)
T ss_dssp TTEEEEEEECCSS-GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSC
T ss_pred CCceeeeecCCCC-ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe-CCCCEEEEEeCCCc
Confidence 9887654211000 0000 0 00000 00000 0000000112468899999999 99999999999999
Q ss_pred EEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcc
Q 001109 327 ILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSR 406 (1155)
Q Consensus 327 I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~ 406 (1155)
|++||+.++..... ....|..+|..+.|+. ++.++ +++.+ +.+.+|.+.....
T Consensus 348 v~~Wd~~~~~~~~~---------------~~~~h~~~v~~~~~s~-------~~~l~-s~s~d----~~v~~w~~~~~~~ 400 (611)
T 1nr0_A 348 INSWDISTGISNRV---------------FPDVHATMITGIKTTS-------KGDLF-TVSWD----DHLKVVPAGGSGV 400 (611)
T ss_dssp EEEEETTTCCEEEC---------------SSCSCSSCEEEEEECT-------TSCEE-EEETT----TEEEEECSSSSSS
T ss_pred EEEEECCCCceeee---------------cccCCcceEEEEEECC-------CCcEE-EEEcC----CceEEeecCCccc
Confidence 99999987643211 1124667788888753 34444 33332 4566665432110
Q ss_pred ccc------ceece---------------------------eeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEE
Q 001109 407 IES------LKCIG---------------------------RVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQV 453 (1155)
Q Consensus 407 ~~~------~~~~~---------------------------~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~ 453 (1155)
... +.... ...+.+...+..+.+.|++ ..+++.+.+|.+++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg------~~lasgs~D~~v~l 474 (611)
T 1nr0_A 401 DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK------QFVAVGGQDSKVHV 474 (611)
T ss_dssp CTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS------CEEEEEETTSEEEE
T ss_pred cccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC------CEEEEeCCCCeEEE
Confidence 000 00000 0001111222333333332 35566666666666
Q ss_pred ecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCc
Q 001109 454 YDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWP 533 (1155)
Q Consensus 454 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~ 533 (1155)
||..... .. ......|..
T Consensus 475 wd~~~~~--------------~~-~~~~~~h~~----------------------------------------------- 492 (611)
T 1nr0_A 475 YKLSGAS--------------VS-EVKTIVHPA----------------------------------------------- 492 (611)
T ss_dssp EEEETTE--------------EE-EEEEEECSS-----------------------------------------------
T ss_pred EEccCCc--------------ee-eeeccCCCC-----------------------------------------------
Confidence 6642100 00 000011111
Q ss_pred ccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCC-CCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeC
Q 001109 534 LTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATY-PTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSS 612 (1155)
Q Consensus 534 l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~-~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~ 612 (1155)
.+.++ +|+|++++|++|+.|++|++||+.. +.+ +.. . ...+|...|++|+|+|||++||+|+.
T Consensus 493 ------~v~~v-~fspdg~~las~s~d~~v~~w~~~~~~~~--~~~---~----~~~~H~~~V~~v~fspdg~~lasgs~ 556 (611)
T 1nr0_A 493 ------EITSV-AFSNNGAFLVATDQSRKVIPYSVANNFEL--AHT---N----SWTFHTAKVACVSWSPDNVRLATGSL 556 (611)
T ss_dssp ------CEEEE-EECTTSSEEEEEETTSCEEEEEGGGTTEE--SCC---C----CCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred ------ceEEE-EECCCCCEEEEEcCCCCEEEEEcCCCCce--eee---e----eeeecccceeEEEECCCCCEEEEEEC
Confidence 12234 7889999999999999999999976 331 111 0 11258899999999999999999999
Q ss_pred CCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 001109 613 SGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVL-NSPICNLKFSNFGARLAVGFECSQVAMLDIS 689 (1155)
Q Consensus 613 dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h-~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~ 689 (1155)
||+|+||++...... ....+.+| .+.|++++|+||++ ||+|+.||+|+|||+.
T Consensus 557 D~~v~lW~~~~~~~~-----------------------~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 557 DNSVIVWNMNKPSDH-----------------------PIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TSCEEEEETTCTTSC-----------------------CEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCcEEEEECCCcccc-----------------------cchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999999999764310 11345689 89999999999998 9999999999999973
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-41 Score=456.92 Aligned_cols=526 Identities=11% Similarity=0.079 Sum_probs=372.1
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEc--CCcEEEEEecCCeEEEEECCCC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQ--NQGFLVSISSGNEIQLWDLEAR 115 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~--dg~~LvS~s~Dg~I~vWDl~t~ 115 (1155)
.||.+.|++++|+|+|++||+|+.||+|+||+..+.+.+... .|..+|.+++|+| ++.++++++.|++|++||+.++
T Consensus 654 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 733 (1249)
T 3sfz_A 654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc
Confidence 589999999999999999999999999999999887766554 5788999999999 4558999999999999999999
Q ss_pred ceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeec--cceeccCCc--eee-eceeEeeEecccccc
Q 001109 116 RITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIH--SPYYVPKDV--IEV-FNHLLLEFCPNHIQR 189 (1155)
Q Consensus 116 ~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~--~~~~i~~~~--~~~-~~~~~l~~~p~~~~~ 189 (1155)
+++.++..| +.|++++|+|+++++++|+.||+|++|++......... ..+...... ... ..+.+++|+|++...
T Consensus 734 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 813 (1249)
T 3sfz_A 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813 (1249)
T ss_dssp SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence 999998877 78999999999999999999999999987654311110 000000000 000 012367888887533
Q ss_pred cccccccccceeeecCCCCCCCccc--ccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEE
Q 001109 190 EKGKAAFNASLLFYCMPPDESGFID--FIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLV 267 (1155)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~ 267 (1155)
+.+ ....+..+.+......... .+...+.. ++|+|++ +.+++++.||.|++||+.++..+..
T Consensus 814 ~~~---~~~~v~~~d~~~~~~~~~~~~~~~~~v~~-----~~~sp~~--------~~l~~~~~dg~v~vwd~~~~~~~~~ 877 (1249)
T 3sfz_A 814 IVA---AKNKVLLFDIHTSGLLAEIHTGHHSTIQY-----CDFSPYD--------HLAVIALSQYCVELWNIDSRLKVAD 877 (1249)
T ss_dssp EEE---ETTEEEEEETTTCCEEEEEECSSSSCCCE-----EEECSST--------TEEEEECSSSCEEEEETTTTEEEEE
T ss_pred EEE---cCCcEEEEEecCCCceeEEcCCCCCceEE-----EEEcCCC--------CEEEEEeCCCeEEEEEcCCCceeee
Confidence 311 1223444444332211111 12334444 9999974 5799999999999999999987765
Q ss_pred ecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccC---
Q 001109 268 RGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSE--- 344 (1155)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~--- 344 (1155)
.. .|...|++++|+ |+|+.|++++.||.|++|++.+..........
T Consensus 878 ~~------------------------------~h~~~v~~v~~s-pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 878 CR------------------------------GHLSWVHGVMFS-PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp EC------------------------------CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred cC------------------------------CCccceEEEEEC-CCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence 22 157889999999 99999999999999999998753211100000
Q ss_pred -----C---------CCCCcccccccC----CCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcc
Q 001109 345 -----N---------SSTDFGKLQLSS----GNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSR 406 (1155)
Q Consensus 345 -----~---------~~~~i~kl~l~~----~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~ 406 (1155)
. ....+....... .....++..+.|++ ++.++++|+.+ ..+.+|++.....
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-------~g~~l~~g~~~----g~i~i~d~~~~~~ 995 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP-------HLEYVAFGDED----GAIKIIELPNNRV 995 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT-------TSSEEEEEETT----SCCEEEETTTTSC
T ss_pred eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC-------CCCEEEEEcCC----CCEEEEEcCCCce
Confidence 0 000000000000 01234677777764 45566666654 5677777643211
Q ss_pred cccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCC
Q 001109 407 IESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEP 486 (1155)
Q Consensus 407 ~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~ 486 (1155)
. .....+.+.+..+.+.|++. .+++.+.+|.+++||...... .....|..
T Consensus 996 ~-------~~~~~h~~~v~~l~~s~dg~------~l~s~~~dg~i~vwd~~~~~~-----------------~~~~~~~~ 1045 (1249)
T 3sfz_A 996 F-------SSGVGHKKAVRHIQFTADGK------TLISSSEDSVIQVWNWQTGDY-----------------VFLQAHQE 1045 (1249)
T ss_dssp E-------EECCCCSSCCCCEEECSSSS------CEEEECSSSBEEEEETTTTEE-----------------ECCBCCSS
T ss_pred e-------eecccCCCceEEEEECCCCC------EEEEEcCCCEEEEEECCCCce-----------------EEEecCCC
Confidence 1 11234566777787776553 788899999999999652110 11122333
Q ss_pred cceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEE
Q 001109 487 HMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIW 566 (1155)
Q Consensus 487 ~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlW 566 (1155)
.|+++ .+++++ .+++++.||+|++|
T Consensus 1046 ~v~~~------------------------------------------------------~~~~~~-~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A 1046 TVKDF------------------------------------------------------RLLQDS-RLLSWSFDGTVKVW 1070 (1249)
T ss_dssp CEEEE------------------------------------------------------EECSSS-EEEEEESSSEEEEE
T ss_pred cEEEE------------------------------------------------------EEcCCC-cEEEEECCCcEEEE
Confidence 33333 344444 57889999999999
Q ss_pred eCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCC
Q 001109 567 DATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGG 646 (1155)
Q Consensus 567 D~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~ 646 (1155)
|+.++... ..+ .+|..+|++++|+|++++|++|+.||+|++|++..+..
T Consensus 1071 d~~~~~~~--~~~---------~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-------------------- 1119 (1249)
T 3sfz_A 1071 NVITGRIE--RDF---------TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-------------------- 1119 (1249)
T ss_dssp ETTTTCCC--EEE---------ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC--------------------
T ss_pred ECCCCcee--EEE---------cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce--------------------
Confidence 99888632 222 26788999999999999999999999999999987532
Q ss_pred CCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEe------ccCCCCCCCeeEEEEeecCCCCc
Q 001109 647 DGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFIT------DSLSNSNSPVLYLAVKSLSDTSN 720 (1155)
Q Consensus 647 ~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~------~~~~~h~~~V~slafs~~~~~~~ 720 (1155)
...+.+|.++|++++|||||++||+|+.||+|+|||+.++..+... ....+|.++|.+++|+
T Consensus 1120 -----~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs------- 1187 (1249)
T 3sfz_A 1120 -----LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS------- 1187 (1249)
T ss_dssp -----SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEEC-------
T ss_pred -----eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEEC-------
Confidence 2356789999999999999999999999999999999998776532 1124689999999999
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeecc
Q 001109 721 LTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIH 767 (1155)
Q Consensus 721 ~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~ 767 (1155)
|||++|++++ |+|++||+.+|+++.....+
T Consensus 1188 ---------------~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~ 1217 (1249)
T 3sfz_A 1188 ---------------PDSKTLVSAG--GYLKWWNVATGDSSQTFYTN 1217 (1249)
T ss_dssp ---------------TTSSCEEEES--SSEEEBCSSSCBCCCCCCCS
T ss_pred ---------------CCCCEEEECC--CeEEEEECCCCceeeeeecc
Confidence 8999999885 89999999999998776444
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-39 Score=420.90 Aligned_cols=559 Identities=10% Similarity=0.051 Sum_probs=335.2
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
..+|...|.+|+|+| |++||+|+.|++|+||+..+.+.+..+.+...|.+++|+|++.+|++++.||+|++||++++++
T Consensus 54 ~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 54 KLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp ECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred EcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 346788999999999 8899999999999999998877766666677999999999999999999999999999998876
Q ss_pred e-----------eeecCC-CceeEEEEecC-CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEec
Q 001109 118 T-----------STLPWE-SNITAFSVIFG-TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCP 184 (1155)
Q Consensus 118 ~-----------~~l~~~-~~Vtsva~spd-~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p 184 (1155)
. ..+..| +.|++++|+|+ +..+++|+.||+| +|++... +... .+..+
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~--~~~~-~~~~~---------------- 192 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN--EIKQ-SFIYE---------------- 192 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT--EEEE-EECCC----------------
T ss_pred ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC--ceEE-EEecc----------------
Confidence 4 223334 78999999996 5789999999999 9976543 2210 00000
Q ss_pred ccccccccccccccceeeecCCCCCCCc-----c-cccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEE
Q 001109 185 NHIQREKGKAAFNASLLFYCMPPDESGF-----I-DFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWD 258 (1155)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd 258 (1155)
.++...+. . ..+.. .|.+++|+|+ + ++|++|+.||.|+|||
T Consensus 193 --------------------~~~g~~~~~~~~~~~~~h~~-----~V~~v~fspd--g------~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 193 --------------------LPPFAPGGDFSEKTNEKRTP-----KVIQSLYHPN--S------LHIITIHEDNSLVFWD 239 (902)
T ss_dssp --------------------BCTTCCCSTTCCCTTSCBCC-----CEEEEEECTT--S------SEEEEEETTCCEEEEE
T ss_pred --------------------cCCcCCCcccccccccccCC-----CeEEEEEcCC--C------CEEEEEECCCeEEEEE
Confidence 00000000 0 00123 3445999998 4 6799999999999999
Q ss_pred ccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEe---cCC-CeEEEEEcC-----CcEEE
Q 001109 259 VSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWAS---NDG-SVLAVGYVD-----GDILL 329 (1155)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~---pdG-~~lasg~~D-----G~I~l 329 (1155)
+.+++++..+...+.+.+..... ...+ . ..+...|++++|++ ||+ ..|++|+.| +.+++
T Consensus 240 ~~~g~~~~~r~l~~~~~~~~~~~---~~~~------~---~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~ 307 (902)
T 2oaj_A 240 ANSGHMIMARTVFETEINVPQPD---YIRD------S---STNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTM 307 (902)
T ss_dssp TTTCCEEEEECSSCSCTTSCCTT---CCCC------C---SSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEE
T ss_pred CCCCcEEEEEeecccccCCCCCc---CCCC------C---ccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEE
Confidence 99998876543321111100000 0000 0 01345799999972 343 578888776 37999
Q ss_pred EEcCCCCCccccccCCCC-------CCcccccccCCCCCccEEEEEeccc-CCC---CCCCceEEEecCCCCCCcceEEE
Q 001109 330 WNLRAAASTKDWKSENSS-------TDFGKLQLSSGNRRLPVITLHWSAE-RSR---NDCRGQLFVFGGDEIGSEEVLTM 398 (1155)
Q Consensus 330 Wd~~s~~~~~~~~~~~~~-------~~i~kl~l~~~~~~~pI~~l~w~~~-~~~---~~~~~~llv~gg~d~~~~~~ltv 398 (1155)
|++........ +... .+-....+. ..+...|..+.+.+. .+. ..+...+++.+. + ..+.+
T Consensus 308 ~~~~~~~~~~~---~s~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~-d----g~l~~ 378 (902)
T 2oaj_A 308 IDLGYTPRYSI---TSYEGMKNYYANPKQMKIFP-LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG-N----GEIET 378 (902)
T ss_dssp EEEEECCCGGG---CCHHHHHHHHHSCSEEEEEC-CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET-T----SCEEE
T ss_pred EecCCCCCccc---cchhhhhhhhcCccceEEEe-cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC-C----CcEEE
Confidence 98532100000 0000 000000011 123456666665441 110 011223444433 2 45777
Q ss_pred EEccCCccc-ccceeceeeeecCCCceeEEEEec---------------------CCC-------CCCCceeEEEEcCCC
Q 001109 399 LYLNWSSRI-ESLKCIGRVDLERKGSFVDMVLLP---------------------NGM-------NESHGTLPCVLTNPG 449 (1155)
Q Consensus 399 l~l~~~~~~-~~~~~~~~~~l~~~~~v~d~~~~~---------------------~~~-------~~~~~~~l~v~~~~G 449 (1155)
|++...... ........+ ..+...+..+.+.+ ... -+.+...+++++.||
T Consensus 379 ~~~~~g~~~~~~~~~~~~l-~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dg 457 (902)
T 2oaj_A 379 MLYPSGIFTDKASLFPQNL-SWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNG 457 (902)
T ss_dssp EETTTCCEECCGGGSCGGG-TTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTS
T ss_pred EECCCCCcccccccCCCcc-cccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCC
Confidence 765211000 000000000 00112233222211 000 123566888999999
Q ss_pred eeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCC
Q 001109 450 KLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGST 529 (1155)
Q Consensus 450 ~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~ 529 (1155)
+|++||..... . ....+..+.+ .+. .
T Consensus 458 tVrlWd~~~g~----------------~------~~~~~~~~~l-------------~~~---------------~---- 483 (902)
T 2oaj_A 458 SVRIYDASHGD----------------I------QDNASFEVNL-------------SRT---------------L---- 483 (902)
T ss_dssp EEEEEESSCCT----------------T------TTTBCEEEEH-------------HHH---------------T----
T ss_pred cEEEEECCCcc----------------c------cCCceEEeec-------------hhh---------------c----
Confidence 99999975211 0 0000000000 000 0
Q ss_pred ccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCe------------------------------------
Q 001109 530 TKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTL------------------------------------ 573 (1155)
Q Consensus 530 ~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l------------------------------------ 573 (1155)
-.++...+.++ +|+|++++||+|+.||+|||||+.++..
T Consensus 484 ----~~~h~~~V~sv-afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (902)
T 2oaj_A 484 ----NKAKELAVDKI-SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAP 558 (902)
T ss_dssp ----TCSSSCCEEEE-EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCC
T ss_pred ----CCCCCCceeEE-EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCC
Confidence 00111223344 8899999999999999999999976531
Q ss_pred -------eeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCC
Q 001109 574 -------SLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGG 646 (1155)
Q Consensus 574 -------~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~ 646 (1155)
.++. .+.+|..+|++|+||||| +||+|+.||+|+|||+.+.... +..
T Consensus 559 ~~~~~g~~~~~---------~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~-------------~~~--- 612 (902)
T 2oaj_A 559 TGVRQGFMPST---------AVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII-------------YME--- 612 (902)
T ss_dssp TTCSEEEEEEE---------EECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE-------------EEE---
T ss_pred CCCCCccceeE---------EEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEE-------------EEe---
Confidence 0111 234799999999999999 9999999999999998664210 000
Q ss_pred CCCceeEEee-cCCCCeEEEEEc-----CCC---CEEEEEeCCCcEEEEec---CCccEEEEecc--CCCCCCCeeEEE-
Q 001109 647 DGPQCKALFS-VLNSPICNLKFS-----NFG---ARLAVGFECSQVAMLDI---STFSVLFITDS--LSNSNSPVLYLA- 711 (1155)
Q Consensus 647 ~g~~~~~~l~-~h~~~VtslafS-----pdg---~~LAsGs~Dg~V~lWDi---~~~~~l~~~~~--~~~h~~~V~sla- 711 (1155)
.+ ..+. +|++.|++|+|| ||| ++||+|+.||+|++||+ .+++++.+... ...|.++|.+++
T Consensus 613 ---~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~ 688 (902)
T 2oaj_A 613 ---NI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDA 688 (902)
T ss_dssp ---EG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEE
T ss_pred ---eh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEe
Confidence 00 1243 899999999999 886 89999999999999999 77776544321 123468999988
Q ss_pred EeecCCCCccccCCC-CCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 712 VKSLSDTSNLTISPK-DSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 712 fs~~~~~~~~~~~~~-~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
|+........ ..+. .........+++.+|+++ |..|+||++.+|+++...
T Consensus 689 ~~~~~~~~~~-a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~ 739 (902)
T 2oaj_A 689 FSKETKSSCL-ATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKG 739 (902)
T ss_dssp EETTTCCBCB-CBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEE
T ss_pred EecCCCCccc-CCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeE
Confidence 7621110000 0000 000001122567666655 788999999999998766
No 10
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.9e-36 Score=385.82 Aligned_cols=475 Identities=12% Similarity=0.060 Sum_probs=324.0
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
.||.+.|++++|+|+|.+||+|+.||.|+||+..+...+... .|..+|.+++|+|++.+|++++.|+.|+|||+.+++.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 699999999999999999999999999999998777665544 4788999999999999999999999999999999999
Q ss_pred eeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEec-ccccccccccc
Q 001109 118 TSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCP-NHIQREKGKAA 195 (1155)
Q Consensus 118 ~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p-~~~~~~~~~~~ 195 (1155)
+.++..| +.|++++|+|++++|++|+.||+|++|+++....... .+..+. ..+.+++|+| ++...+.+ .
T Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~-----~~v~~~~~~p~~~~~l~~~--~ 160 (814)
T 3mkq_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ--TFEGHE-----HFVMCVAFNPKDPSTFASG--C 160 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE--EEECCS-----SCEEEEEEETTEEEEEEEE--E
T ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE--EEcCCC-----CcEEEEEEEcCCCCEEEEE--e
Confidence 9998866 7899999999999999999999999998876421111 111111 1234889999 44222211 1
Q ss_pred cccceeeecCCCCCCCccccc-c-cccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccc
Q 001109 196 FNASLLFYCMPPDESGFIDFI-I-RSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDL 273 (1155)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~ 273 (1155)
.+..+.++.+........... + ..+. +++|+|..++ ++|++++.||.|++||+.+++.+....
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~------~~l~~~~~dg~i~~~d~~~~~~~~~~~---- 225 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVN-----YVDYYPLPDK------PYMITASDDLTIKIWDYQTKSCVATLE---- 225 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCC-----EEEECCSTTC------CEEEEECTTSEEEEEETTTTEEEEEEE----
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEE-----EEEEEECCCC------CEEEEEeCCCEEEEEECCCCcEEEEEc----
Confidence 122445555533222211111 1 3344 4999994445 689999999999999999988776421
Q ss_pred ccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccc
Q 001109 274 QLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKL 353 (1155)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl 353 (1155)
.|...|++++|+ |+|++|++|+.||.|++||+.++.....
T Consensus 226 --------------------------~~~~~v~~~~~~-~~~~~l~~~~~dg~v~vwd~~~~~~~~~------------- 265 (814)
T 3mkq_A 226 --------------------------GHMSNVSFAVFH-PTLPIIISGSEDGTLKIWNSSTYKVEKT------------- 265 (814)
T ss_dssp --------------------------CCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCSEEEE-------------
T ss_pred --------------------------CCCCCEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEE-------------
Confidence 146789999999 9999999999999999999987643221
Q ss_pred cccCCCCCccEEEEEecccCCCCCCCceE-EEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecC
Q 001109 354 QLSSGNRRLPVITLHWSAERSRNDCRGQL-FVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPN 432 (1155)
Q Consensus 354 ~l~~~~~~~pI~~l~w~~~~~~~~~~~~l-lv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~ 432 (1155)
...+..++..+.|++ ++..+ ++++.+ ..+.++.+..... .+.+.|+
T Consensus 266 ---~~~~~~~v~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------------~~~~~~~ 312 (814)
T 3mkq_A 266 ---LNVGLERSWCIATHP------TGRKNYIASGFD-----NGFTVLSLGNDEP-------------------TLSLDPV 312 (814)
T ss_dssp ---ECCSSSSEEEEEECT------TCGGGEEEEEET-----TEEEEEECSCCSC-------------------CEEECSS
T ss_pred ---eecCCCcEEEEEEcc------CCCceEEEEEeC-----CCEEEEEcCCCCc-------------------eeEECCC
Confidence 123456889998875 34443 555543 3455554432110 0111111
Q ss_pred CCCCCCceeEEEEcCCCe---eEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHH
Q 001109 433 GMNESHGTLPCVLTNPGK---LQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKT 509 (1155)
Q Consensus 433 ~~~~~~~~~l~v~~~~G~---l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~ 509 (1155)
+ ..+++...+.. +........ +.... ..
T Consensus 313 g------~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~-------~~------------------------ 343 (814)
T 3mkq_A 313 G------KLVWSGGKNAAASDIFTAVIRGN------------EEVEQ-------DE------------------------ 343 (814)
T ss_dssp S------EEEEECCTTSCTTCEEEEECCSC------------CCCCS-------SS------------------------
T ss_pred C------CEEEECcccccceeeeeeecccc------------ccccc-------Cc------------------------
Confidence 1 11111111110 000000000 00000 00
Q ss_pred HHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccC
Q 001109 510 LSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTA 589 (1155)
Q Consensus 510 ~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~ 589 (1155)
+ ...... .+.........+ +++|+++++++++ ||.+++|++.....
T Consensus 344 -----------~---~~~~~~--~~~~~~~~~~~~-~~spdg~~la~~~-~~~~~i~~~~~~~~---------------- 389 (814)
T 3mkq_A 344 -----------P---LSLQTK--ELGSVDVFPQSL-AHSPNGRFVTVVG-DGEYVIYTALAWRN---------------- 389 (814)
T ss_dssp -----------C---BCCCCE--EECCCSSCCSEE-EECTTSSEEEEEE-TTEEEEEETTTTEE----------------
T ss_pred -----------c---ceeeee--cCCCCccCCcee-EECCCCCEEEEec-CCEEEEEECccccc----------------
Confidence 0 000000 000000111234 7899999999998 99999999765431
Q ss_pred CCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcC
Q 001109 590 TESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSN 669 (1155)
Q Consensus 590 gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp 669 (1155)
.+...|++++|+|++++||+++.+|.|++|+. +.+|...|.+++|+|
T Consensus 390 ~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~---------------------------------~~~~~~~v~~~~~s~ 436 (814)
T 3mkq_A 390 KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN---------------------------------FKEVTSWSVPMHSAI 436 (814)
T ss_dssp EEEEECSEEEECTTSSCEEEECTTCCEEEEET---------------------------------TEECTTCCCCCSSCC
T ss_pred cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC---------------------------------CCCccceEEcCCcCc
Confidence 11237889999999999999999999999962 146778899999999
Q ss_pred CC---CEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEE--
Q 001109 670 FG---ARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFM-- 744 (1155)
Q Consensus 670 dg---~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~-- 744 (1155)
+| ++|++++.||+|++||+.++..+.... .|.. .++|+ |||++|+++
T Consensus 437 dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~---~~~~---~v~~s----------------------~dg~~la~~~~ 488 (814)
T 3mkq_A 437 DRLFSGALLGVKSDGFVYFFDWDNGTLVRRID---VNAK---DVIWS----------------------DNGELVMIVNT 488 (814)
T ss_dssp CEEECSSSEEEEETTEEEEECTTTCCEEEEES---SCEE---EEEEC----------------------TTSSEEEEEEC
T ss_pred cceecceEEEEecCCEEEEEECCcCcEEEEEe---cCCC---EEEEc----------------------CCCCEEEEEEc
Confidence 99 689999999999999999998877653 2443 89998 899999999
Q ss_pred ----eCCceEEEEE
Q 001109 745 ----TKDAHIVVCD 754 (1155)
Q Consensus 745 ----s~Dg~I~vwd 754 (1155)
+.|..+.+|-
T Consensus 489 ~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 489 NSNGDEASGYTLLF 502 (814)
T ss_dssp CCSSCSCSEEEEEE
T ss_pred CcccCCceEEEEEe
Confidence 6666665654
No 11
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.3e-35 Score=364.92 Aligned_cols=478 Identities=14% Similarity=0.122 Sum_probs=315.6
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC----ceeeeecCC-Cc-eeEEEEec--CCCEEEEEeCCCcEEEEE
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR----RITSTLPWE-SN-ITAFSVIF--GTSYMYIGDEYGMVYVLK 152 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~----~~~~~l~~~-~~-Vtsva~sp--d~~~l~~G~~dG~V~vw~ 152 (1155)
.+...|.+++|+|++.+|++++ ++.|+|||++++ +....+..| +. |++++|+| ++++|++|+.||+|++|+
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 3577899999999999999988 889999999999 888888877 67 99999999 999999999999999998
Q ss_pred ecCC------CceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceee
Q 001109 153 YDTE------EGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVE 226 (1155)
Q Consensus 153 ~d~~------~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~ 226 (1155)
++.. ...+. ..+. . +..++ .
T Consensus 95 ~~~~~~~~~~~~~~~---~~~~-----------------------~-----------------------~~~~v-----~ 120 (615)
T 1pgu_A 95 WTFDKESNSVEVNVK---SEFQ-----------------------V-----------------------LAGPI-----S 120 (615)
T ss_dssp EEEEGGGTEEEEEEE---EEEE-----------------------C-----------------------CSSCE-----E
T ss_pred CCCCccccccccccc---chhh-----------------------c-----------------------ccccE-----E
Confidence 8642 11110 0000 0 12333 4
Q ss_pred EEEEeecccccccccccEEEEEEcC----CeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCccccccccccc
Q 001109 227 IRLLQFQKHVNSTLGFSQLLLVYAN----GLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVE 302 (1155)
Q Consensus 227 ~v~~~p~~~~~~~~~~~~llsg~~d----G~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1155)
+++|+|++ ++|++++.+ +.|.+|| .++.+... . .|.
T Consensus 121 ~~~~s~~~--------~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-------~-----------------------~~~ 160 (615)
T 1pgu_A 121 DISWDFEG--------RRLCVVGEGRDNFGVFISWD--SGNSLGEV-------S-----------------------GHS 160 (615)
T ss_dssp EEEECTTS--------SEEEEEECCSSCSEEEEETT--TCCEEEEC-------C-----------------------SCS
T ss_pred EEEEeCCC--------CEEEEeccCCCCccEEEEEE--CCCcceee-------e-----------------------cCC
Confidence 49999984 579999888 7999998 45554431 1 147
Q ss_pred CCccEEEEEecCCC-eEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCc---cEEEEEecccCCCCCC
Q 001109 303 KEISSLCWASNDGS-VLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRL---PVITLHWSAERSRNDC 378 (1155)
Q Consensus 303 ~~V~sl~~s~pdG~-~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~---pI~~l~w~~~~~~~~~ 378 (1155)
..|++++|+ |+++ .|++|+.||.|++||+.+...... ...|.. +|..+.|++ +
T Consensus 161 ~~v~~~~~~-~~~~~~l~~~~~d~~v~vwd~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~------~ 217 (615)
T 1pgu_A 161 QRINACHLK-QSRPMRSMTVGDDGSVVFYQGPPFKFSAS----------------DRTHHKQGSFVRDVEFSP------D 217 (615)
T ss_dssp SCEEEEEEC-SSSSCEEEEEETTTEEEEEETTTBEEEEE----------------ECSSSCTTCCEEEEEECS------T
T ss_pred ccEEEEEEC-CCCCcEEEEEeCCCcEEEEeCCCcceeee----------------ecccCCCCceEEEEEECC------C
Confidence 889999999 9998 899999999999999877543211 123455 899999975 3
Q ss_pred CceEEEecCCCCCCcceEEEEEccCCcccccceeceeeee---cCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEec
Q 001109 379 RGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDL---ERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYD 455 (1155)
Q Consensus 379 ~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l---~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d 455 (1155)
++.++++++.+ ..+.+|++...... ..+.. .+.+++..+.+. ++ ..+++.+.+|.+++||
T Consensus 218 ~~~~l~~~~~d----g~i~vwd~~~~~~~------~~~~~~~~~~~~~v~~~~~~-~~------~~l~~~~~d~~i~~wd 280 (615)
T 1pgu_A 218 SGEFVITVGSD----RKISCFDGKSGEFL------KYIEDDQEPVQGGIFALSWL-DS------QKFATVGADATIRVWD 280 (615)
T ss_dssp TCCEEEEEETT----CCEEEEETTTCCEE------EECCBTTBCCCSCEEEEEES-SS------SEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCC----CeEEEEECCCCCEe------EEecccccccCCceEEEEEc-CC------CEEEEEcCCCcEEEEE
Confidence 25666666654 57888876432111 11112 566777777776 33 3788889999999999
Q ss_pred CCCCCCcccccccccCCCcccCCcccccC----CCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCcc
Q 001109 456 RPRFSPKKSQEKKKISSSSLQYPMLIPTI----EPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTK 531 (1155)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~h----~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 531 (1155)
...... ...+..+ ...+.++.+. +... ++. .. .......
T Consensus 281 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-~~~~-l~~--------~~-----------~~g~i~~ 323 (615)
T 1pgu_A 281 VTTSKC----------------VQKWTLDKQQLGNQQVGVVAT-GNGR-IIS--------LS-----------LDGTLNF 323 (615)
T ss_dssp TTTTEE----------------EEEEECCTTCGGGCEEEEEEE-ETTE-EEE--------EE-----------TTSCEEE
T ss_pred CCCCcE----------------EEEEcCCCCcccCceeEEEeC-CCCe-EEE--------EE-----------CCCCEEE
Confidence 753221 1111111 2233344332 1111 110 00 0001111
Q ss_pred Ccc---------cCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEec
Q 001109 532 WPL---------TGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCS 602 (1155)
Q Consensus 532 w~l---------~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafsp 602 (1155)
|.+ .++...+ ....- .. +++|+.||.|++||+. . +. .+|..+|++++| +
T Consensus 324 ~d~~~~~~~~~~~~~~~~v---~~~~~-~~-l~~~~~dg~i~~w~~~--~---~~-----------~~~~~~v~~~~~-~ 381 (615)
T 1pgu_A 324 YELGHDEVLKTISGHNKGI---TALTV-NP-LISGSYDGRIMEWSSS--S---MH-----------QDHSNLIVSLDN-S 381 (615)
T ss_dssp EETTEEEEEEEECCCSSCE---EEEET-TT-TEEEETTSCEEETTTT--E---EE-----------CCCCSCEEEEEC-C
T ss_pred EECCCCcEEEEEeCCCCCE---EEEEe-cC-cEEECCCCeEEEEEch--h---hc-----------CcccCceEEEEE-C
Confidence 211 1221111 12334 44 7888888888888876 1 11 267789999999 6
Q ss_pred CCCeEEEEeCCCeEEEEEeccCcccc-------------------------------------------------ceeee
Q 001109 603 VTLNLAIGSSSGLVWLYNLIKSSNEE-------------------------------------------------TLNLV 633 (1155)
Q Consensus 603 dg~~Lasgs~dG~V~lwd~~~~~~~~-------------------------------------------------~~~~v 633 (1155)
++.+|++++.||.|++|++....... ...+.
T Consensus 382 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 461 (615)
T 1pgu_A 382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV 461 (615)
T ss_dssp STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE
Confidence 67889999999999999987532100 00000
Q ss_pred ccC-CceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCC-CCCCeeEEE
Q 001109 634 TET-GKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSN-SNSPVLYLA 711 (1155)
Q Consensus 634 ~~~-~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~-h~~~V~sla 711 (1155)
... .+.+.++....+......+.+|...|++++|+|+|++||+|+.||.|+|||+.++..+.. +.+ |..+|.+++
T Consensus 462 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~h~~~v~~~~ 538 (615)
T 1pgu_A 462 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS---RWAFRTSKINAIS 538 (615)
T ss_dssp EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC---CSCCCSSCEEEEE
T ss_pred eecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeE---eecCCCCceeEEE
Confidence 001 222333322211111045667999999999999999999999999999999999988764 345 999999999
Q ss_pred EeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCC-ceeeeeecc
Q 001109 712 VKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTG-HILFSRSIH 767 (1155)
Q Consensus 712 fs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG-~~l~~~~~~ 767 (1155)
|++.... ....++|+++|++++.|++|++||..++ +++.....|
T Consensus 539 ~sp~~~~------------~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h 583 (615)
T 1pgu_A 539 WKPAEKG------------ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 583 (615)
T ss_dssp ECCCC------------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS
T ss_pred EcCcccc------------ccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC
Confidence 9920000 0000118999999999999999999998 677766444
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-34 Score=343.81 Aligned_cols=306 Identities=15% Similarity=0.209 Sum_probs=224.8
Q ss_pred eccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC
Q 001109 37 LHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR 115 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~ 115 (1155)
...||.+.|++++|+|++.+||+|+.||+|+||+..+.+....+ .|...|.+++|+|++.+|++++.|++|+|||+.++
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 34699999999999999999999999999999998876554443 47789999999999999999999999999999877
Q ss_pred ceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccc
Q 001109 116 RITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKA 194 (1155)
Q Consensus 116 ~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~ 194 (1155)
+++.++..| ..|+
T Consensus 183 ~~~~~~~~h~~~V~------------------------------------------------------------------ 196 (410)
T 1vyh_C 183 ECIRTMHGHDHNVS------------------------------------------------------------------ 196 (410)
T ss_dssp CEEECCCCCSSCEE------------------------------------------------------------------
T ss_pred ceeEEEcCCCCCEE------------------------------------------------------------------
Confidence 665544332 1222
Q ss_pred ccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccc
Q 001109 195 AFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQ 274 (1155)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~ 274 (1155)
+ ++|+|++ ++|++|+.||.|++||+.++.++....
T Consensus 197 ---------------------------~-----v~~~p~~--------~~l~s~s~D~~i~~wd~~~~~~~~~~~----- 231 (410)
T 1vyh_C 197 ---------------------------S-----VSIMPNG--------DHIVSASRDKTIKMWEVQTGYCVKTFT----- 231 (410)
T ss_dssp ---------------------------E-----EEECSSS--------SEEEEEETTSEEEEEETTTCCEEEEEE-----
T ss_pred ---------------------------E-----EEEeCCC--------CEEEEEeCCCeEEEEECCCCcEEEEEe-----
Confidence 2 6676653 457788888888888888777665411
Q ss_pred cccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCccccc
Q 001109 275 LKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQ 354 (1155)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~ 354 (1155)
.|...|.+++|+ ++|.+|++|+.||+|++||+.+......
T Consensus 232 -------------------------~h~~~v~~~~~~-~~g~~l~s~s~D~~v~vwd~~~~~~~~~-------------- 271 (410)
T 1vyh_C 232 -------------------------GHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAE-------------- 271 (410)
T ss_dssp -------------------------CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEE--------------
T ss_pred -------------------------CCCccEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCceeeE--------------
Confidence 146789999999 9999999999999999999976532110
Q ss_pred ccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCC
Q 001109 355 LSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGM 434 (1155)
Q Consensus 355 l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~ 434 (1155)
...|..+|..+.|++
T Consensus 272 --~~~h~~~v~~~~~~~--------------------------------------------------------------- 286 (410)
T 1vyh_C 272 --LREHRHVVECISWAP--------------------------------------------------------------- 286 (410)
T ss_dssp --ECCCSSCEEEEEECC---------------------------------------------------------------
T ss_pred --ecCCCceEEEEEEcC---------------------------------------------------------------
Confidence 011222222222221
Q ss_pred CCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhc
Q 001109 435 NESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAK 514 (1155)
Q Consensus 435 ~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~ 514 (1155)
+.....+. .
T Consensus 287 -------------------------------------------------------------~~~~~~~~--------~-- 295 (410)
T 1vyh_C 287 -------------------------------------------------------------ESSYSSIS--------E-- 295 (410)
T ss_dssp -------------------------------------------------------------SCGGGGGG--------G--
T ss_pred -------------------------------------------------------------cccccchh--------h--
Confidence 00000000 0
Q ss_pred cccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCC
Q 001109 515 VRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESES 594 (1155)
Q Consensus 515 ~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~ 594 (1155)
..+... . .....+.+|++|+.||+|++||+..+.. +..+. +|..+
T Consensus 296 -------------------~~~~~~----~-~~~~~g~~l~sgs~D~~i~iwd~~~~~~--~~~~~---------~h~~~ 340 (410)
T 1vyh_C 296 -------------------ATGSET----K-KSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLV---------GHDNW 340 (410)
T ss_dssp -------------------CCSCC------------CCEEEEEETTSEEEEEETTTTEE--EEEEE---------CCSSC
T ss_pred -------------------hccccc----c-ccCCCCCEEEEEeCCCeEEEEECCCCce--EEEEE---------CCCCc
Confidence 000000 0 1123456899999999999999988763 33332 78889
Q ss_pred eEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEE
Q 001109 595 VSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARL 674 (1155)
Q Consensus 595 V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~L 674 (1155)
|++++|+|++++|++|+.||+|++||+.... +...+.+|.+.|++|+|+|++.+|
T Consensus 341 v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~-------------------------~~~~~~~h~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKR-------------------------CMKTLNAHEHFVTSLDFHKTAPYV 395 (410)
T ss_dssp EEEEEECSSSSCEEEEETTTEEEEECCTTSC-------------------------CCEEEECCSSCEEEEEECSSSSCE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------------------------eEEEEcCCCCcEEEEEEcCCCCEE
Confidence 9999999999999999999999999997643 235678999999999999999999
Q ss_pred EEEeCCCcEEEEecC
Q 001109 675 AVGFECSQVAMLDIS 689 (1155)
Q Consensus 675 AsGs~Dg~V~lWDi~ 689 (1155)
|+|+.||+|+|||++
T Consensus 396 ~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 396 VTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEETTSEEEEEC--
T ss_pred EEEeCCCcEEEEeCC
Confidence 999999999999964
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.2e-34 Score=336.00 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=128.2
Q ss_pred cCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecC--------------------CCe
Q 001109 547 DYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSV--------------------TLN 606 (1155)
Q Consensus 547 ~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspd--------------------g~~ 606 (1155)
+++++++|++|+.||+|++||+..+... ..+. +|...|.+++|+|+ +.+
T Consensus 242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~--~~~~---------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 310 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQTVRVWVVATKECK--AELR---------EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310 (410)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC---------CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcee--eEec---------CCCceEEEEEEcCcccccchhhhccccccccCCCCCE
Confidence 3466778999999999999999887632 3332 68889999999997 678
Q ss_pred EEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001109 607 LAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAML 686 (1155)
Q Consensus 607 Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lW 686 (1155)
|++|+.||+|++||+..+. +...+.+|.+.|++|+|+|+|++|++|+.||+|+||
T Consensus 311 l~sgs~D~~i~iwd~~~~~-------------------------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vw 365 (410)
T 1vyh_C 311 LLSGSRDKTIKMWDVSTGM-------------------------CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365 (410)
T ss_dssp EEEEETTSEEEEEETTTTE-------------------------EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred EEEEeCCCeEEEEECCCCc-------------------------eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 9999999999999998642 235678999999999999999999999999999999
Q ss_pred ecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 687 DISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 687 Di~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
|+.++.++... .+|..+|++|+|+ |++.+|++|+.|++|+|||.
T Consensus 366 d~~~~~~~~~~---~~h~~~v~~l~~~----------------------~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 366 DYKNKRCMKTL---NAHEHFVTSLDFH----------------------KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CCTTSCCCEEE---ECCSSCEEEEEEC----------------------SSSSCEEEEETTSEEEEEC-
T ss_pred ECCCCceEEEE---cCCCCcEEEEEEc----------------------CCCCEEEEEeCCCcEEEEeC
Confidence 99998887654 4699999999999 88999999999999999985
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-33 Score=323.55 Aligned_cols=287 Identities=15% Similarity=0.203 Sum_probs=225.8
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
.|..+|.+++|+|++.+|++++.|++|+|||+.+++.+..+..+ ..|.+++|+|++++|++|+.||.|++|++....+.
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence 57889999999999999999999999999999999999888876 78999999999999999999999999987654321
Q ss_pred eeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccc
Q 001109 160 LIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNST 239 (1155)
Q Consensus 160 l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~ 239 (1155)
.. ... . +.+ +... |.++.|+|+
T Consensus 133 ~~-----~~~-~------------------~~~-----------------------h~~~-----v~~~~~~~~------ 154 (340)
T 1got_B 133 VR-----VSR-E------------------LAG-----------------------HTGY-----LSCCRFLDD------ 154 (340)
T ss_dssp CE-----EEE-E------------------EEC-----------------------CSSC-----EEEEEEEET------
T ss_pred ce-----eEE-E------------------ecC-----------------------CCcc-----EEEEEECCC------
Confidence 10 000 0 001 1233 334888886
Q ss_pred ccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEE
Q 001109 240 LGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLA 319 (1155)
Q Consensus 240 ~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~la 319 (1155)
..+++++.||.|++||+.+++.+.... .|...|++++|+ |++++|+
T Consensus 155 ---~~l~s~s~d~~i~~wd~~~~~~~~~~~------------------------------~h~~~v~~~~~~-~~~~~l~ 200 (340)
T 1got_B 155 ---NQIVTSSGDTTCALWDIETGQQTTTFT------------------------------GHTGDVMSLSLA-PDTRLFV 200 (340)
T ss_dssp ---TEEEEEETTSCEEEEETTTTEEEEEEC------------------------------CCSSCEEEEEEC-TTSSEEE
T ss_pred ---CcEEEEECCCcEEEEECCCCcEEEEEc------------------------------CCCCceEEEEEC-CCCCEEE
Confidence 369999999999999999998876521 157889999999 9999999
Q ss_pred EEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEE
Q 001109 320 VGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTML 399 (1155)
Q Consensus 320 sg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl 399 (1155)
+|+.||.|++||+.++.. +
T Consensus 201 sg~~d~~v~~wd~~~~~~----------------------------------------------------------~--- 219 (340)
T 1got_B 201 SGACDASAKLWDVREGMC----------------------------------------------------------R--- 219 (340)
T ss_dssp EEETTSCEEEEETTTCSE----------------------------------------------------------E---
T ss_pred EEeCCCcEEEEECCCCee----------------------------------------------------------E---
Confidence 999999999999864310 0
Q ss_pred EccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCc
Q 001109 400 YLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPM 479 (1155)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 479 (1155)
..
T Consensus 220 ----------------------------------------------------~~-------------------------- 221 (340)
T 1got_B 220 ----------------------------------------------------QT-------------------------- 221 (340)
T ss_dssp ----------------------------------------------------EE--------------------------
T ss_pred ----------------------------------------------------EE--------------------------
Confidence 00
Q ss_pred ccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEEC
Q 001109 480 LIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYR 559 (1155)
Q Consensus 480 ~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~ 559 (1155)
+..|...|+++ +|+|++++|++|+.
T Consensus 222 -~~~h~~~v~~v------------------------------------------------------~~~p~~~~l~s~s~ 246 (340)
T 1got_B 222 -FTGHESDINAI------------------------------------------------------CFFPNGNAFATGSD 246 (340)
T ss_dssp -ECCCSSCEEEE------------------------------------------------------EECTTSSEEEEEET
T ss_pred -EcCCcCCEEEE------------------------------------------------------EEcCCCCEEEEEcC
Confidence 00122333333 44567779999999
Q ss_pred CCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCce
Q 001109 560 DGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKE 639 (1155)
Q Consensus 560 DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~ 639 (1155)
||+|++||+..+... ..+.. ..+...|++++|+|+|++|++|+.||.|++||+.....
T Consensus 247 d~~v~iwd~~~~~~~--~~~~~-------~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~------------- 304 (340)
T 1got_B 247 DATCRLFDLRADQEL--MTYSH-------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR------------- 304 (340)
T ss_dssp TSCEEEEETTTTEEE--EEECC-------TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-------------
T ss_pred CCcEEEEECCCCcEE--EEEcc-------CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE-------------
Confidence 999999999877532 22221 13445899999999999999999999999999876432
Q ss_pred EEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001109 640 VHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLD 687 (1155)
Q Consensus 640 ~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWD 687 (1155)
...+.+|.++|++|+|+|+|++||+|+.||+|+|||
T Consensus 305 ------------~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 305 ------------AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ------------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ------------eeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 346789999999999999999999999999999997
No 15
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.6e-33 Score=314.76 Aligned_cols=293 Identities=14% Similarity=0.185 Sum_probs=216.3
Q ss_pred CcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEE
Q 001109 32 DPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLW 110 (1155)
Q Consensus 32 ~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vW 110 (1155)
++...+ .||.+.|++++|+|+|++||+|+.||+|+||+..+...+... .+..+|.+++|+|++.+|++++.|++|++|
T Consensus 4 ~~~~~~-~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTF-SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEE-EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeEEee-cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 344444 589999999999999999999999999999999877665544 467899999999999999999999999999
Q ss_pred ECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccc
Q 001109 111 DLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQR 189 (1155)
Q Consensus 111 Dl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~ 189 (1155)
|+.+++++..+..| +.|++++|+|+++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~---------------------------------------------------- 110 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---------------------------------------------------- 110 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS----------------------------------------------------
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCC----------------------------------------------------
Confidence 99988877665544 3444444444444
Q ss_pred cccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEE-EEe
Q 001109 190 EKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVV-LVR 268 (1155)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~-~~~ 268 (1155)
+|++|+.||.|++||+.++..+ ...
T Consensus 111 ------------------------------------------------------~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 111 ------------------------------------------------------YVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp ------------------------------------------------------EEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred ------------------------------------------------------EEEEECCCCeEEEEECCCCcchhhhh
Confidence 4555555555555555544222 110
Q ss_pred cccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEec-CCCeEEEEEcCCcEEEEEcCCCCCccccccCCCC
Q 001109 269 GSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASN-DGSVLAVGYVDGDILLWNLRAAASTKDWKSENSS 347 (1155)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~p-dG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~ 347 (1155)
. .|...|++++|+ | ++..||+|+.||+|++||+......
T Consensus 137 -------~-----------------------~h~~~v~~v~~~-p~~~~~l~sgs~D~~v~iwd~~~~~~~--------- 176 (304)
T 2ynn_A 137 -------E-----------------------GHEHFVMCVAFN-PKDPSTFASGCLDRTVKVWSLGQSTPN--------- 176 (304)
T ss_dssp -------C-----------------------CCCSCEEEEEEC-TTCTTEEEEEETTSEEEEEETTCSSCS---------
T ss_pred -------c-----------------------ccCCcEEEEEEC-CCCCCEEEEEeCCCeEEEEECCCCCcc---------
Confidence 0 146789999999 7 7899999999999999998643110
Q ss_pred CCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEE
Q 001109 348 TDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDM 427 (1155)
Q Consensus 348 ~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~ 427 (1155)
..+ ..
T Consensus 177 -----------------~~~-----------------~~----------------------------------------- 181 (304)
T 2ynn_A 177 -----------------FTL-----------------TT----------------------------------------- 181 (304)
T ss_dssp -----------------EEE-----------------EC-----------------------------------------
T ss_pred -----------------cee-----------------cc-----------------------------------------
Confidence 000 00
Q ss_pred EEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHH
Q 001109 428 VLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELS 507 (1155)
Q Consensus 428 ~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~ 507 (1155)
.|...+..+.+.
T Consensus 182 -------------------------------------------------------~~~~~v~~~~~~------------- 193 (304)
T 2ynn_A 182 -------------------------------------------------------GQERGVNYVDYY------------- 193 (304)
T ss_dssp -------------------------------------------------------CCTTCEEEEEEC-------------
T ss_pred -------------------------------------------------------CCcCcEEEEEEE-------------
Confidence 011112222221
Q ss_pred HHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccc
Q 001109 508 KTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIR 587 (1155)
Q Consensus 508 ~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~ 587 (1155)
..+++++|+||+.||+|++||+..+.. +..+.
T Consensus 194 ---------------------------------------~~~~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~------- 225 (304)
T 2ynn_A 194 ---------------------------------------PLPDKPYMITASDDLTIKIWDYQTKSC--VATLE------- 225 (304)
T ss_dssp ---------------------------------------CSTTCCEEEEEETTSEEEEEETTTTEE--EEEEE-------
T ss_pred ---------------------------------------EcCCCCEEEEEcCCCeEEEEeCCCCcc--ceeeC-------
Confidence 114556899999999999999988762 34443
Q ss_pred cCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEE
Q 001109 588 TATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKF 667 (1155)
Q Consensus 588 ~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtslaf 667 (1155)
+|..+|++++|+|++.+||+|+.||+|++||+.+.. +...+..|...|++++|
T Consensus 226 --~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~-------------------------~~~~~~~~~~~~~~~~~ 278 (304)
T 2ynn_A 226 --GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK-------------------------VEKTLNVGLERSWCIAT 278 (304)
T ss_dssp --CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-------------------------EEEEECCSSSSEEEEEE
T ss_pred --CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------------------------eeeeccCCCccEEEEEE
Confidence 788899999999999999999999999999988743 23566788999999999
Q ss_pred cCCCC--EEEEEeCCCcEEEEecCC
Q 001109 668 SNFGA--RLAVGFECSQVAMLDIST 690 (1155)
Q Consensus 668 Spdg~--~LAsGs~Dg~V~lWDi~~ 690 (1155)
+|+|+ ++|+|+.|| +.+|++..
T Consensus 279 ~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 279 HPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp CTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CCCCCceEEEEecCCc-eEEEEecc
Confidence 99986 589998777 66787754
No 16
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.1e-32 Score=349.58 Aligned_cols=445 Identities=11% Similarity=0.105 Sum_probs=314.3
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
.|...|++++|+|++.+|++++.||+|+|||+.+++.+.++..| +.|++++|+|++++|++|+.||.|+||+++...
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-- 88 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-- 88 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--
Confidence 46779999999999999999999999999999999999998866 789999999999999999999999999776532
Q ss_pred eeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccc
Q 001109 160 LIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNST 239 (1155)
Q Consensus 160 l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~ 239 (1155)
.. ..+. + +...+.+ ++|+|++
T Consensus 89 ~~---~~~~-----------------------~-----------------------~~~~v~~-----~~~s~~~----- 109 (814)
T 3mkq_A 89 KV---VDFE-----------------------A-----------------------HPDYIRS-----IAVHPTK----- 109 (814)
T ss_dssp EE---EEEE-----------------------C-----------------------CSSCEEE-----EEECSSS-----
T ss_pred EE---EEEe-----------------------c-----------------------CCCCEEE-----EEEeCCC-----
Confidence 11 0000 0 1233444 9999984
Q ss_pred ccccEEEEEEcCCeEEEEEccCC-eEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEec-CCCe
Q 001109 240 LGFSQLLLVYANGLIILWDVSED-KVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASN-DGSV 317 (1155)
Q Consensus 240 ~~~~~llsg~~dG~I~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~p-dG~~ 317 (1155)
++|++++.||.|++||+.++ ....... .|...|++++|+ | ++..
T Consensus 110 ---~~l~~~~~dg~i~vw~~~~~~~~~~~~~------------------------------~~~~~v~~~~~~-p~~~~~ 155 (814)
T 3mkq_A 110 ---PYVLSGSDDLTVKLWNWENNWALEQTFE------------------------------GHEHFVMCVAFN-PKDPST 155 (814)
T ss_dssp ---SEEEEEETTSEEEEEEGGGTSEEEEEEE------------------------------CCSSCEEEEEEE-TTEEEE
T ss_pred ---CEEEEEcCCCEEEEEECCCCceEEEEEc------------------------------CCCCcEEEEEEE-cCCCCE
Confidence 57999999999999999887 4433311 147789999999 8 8999
Q ss_pred EEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEE
Q 001109 318 LAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLT 397 (1155)
Q Consensus 318 lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~lt 397 (1155)
|++|+.||.|++||+.++..... + ...+..++..+.|++. +++.++++++.+ ..+.
T Consensus 156 l~~~~~dg~v~vwd~~~~~~~~~------------~---~~~~~~~v~~~~~~~~-----~~~~~l~~~~~d----g~i~ 211 (814)
T 3mkq_A 156 FASGCLDRTVKVWSLGQSTPNFT------------L---TTGQERGVNYVDYYPL-----PDKPYMITASDD----LTIK 211 (814)
T ss_dssp EEEEETTSEEEEEETTCSSCSEE------------E---ECCCTTCCCEEEECCS-----TTCCEEEEECTT----SEEE
T ss_pred EEEEeCCCeEEEEECCCCcceeE------------E---ecCCCCCEEEEEEEEC-----CCCCEEEEEeCC----CEEE
Confidence 99999999999999977543221 1 1123466778888651 255667777654 6788
Q ss_pred EEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccC
Q 001109 398 MLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQY 477 (1155)
Q Consensus 398 vl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~ 477 (1155)
+|++...... .....+.+++..+.+.|++. .+++.+.+|.+++||.... ..
T Consensus 212 ~~d~~~~~~~-------~~~~~~~~~v~~~~~~~~~~------~l~~~~~dg~v~vwd~~~~----------------~~ 262 (814)
T 3mkq_A 212 IWDYQTKSCV-------ATLEGHMSNVSFAVFHPTLP------IIISGSEDGTLKIWNSSTY----------------KV 262 (814)
T ss_dssp EEETTTTEEE-------EEEECCSSCEEEEEECSSSS------EEEEEETTSCEEEEETTTC----------------SE
T ss_pred EEECCCCcEE-------EEEcCCCCCEEEEEEcCCCC------EEEEEeCCCeEEEEECCCC----------------cE
Confidence 8876432111 11223556777777776553 7888899999999997521 22
Q ss_pred CcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEE
Q 001109 478 PMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAG 557 (1155)
Q Consensus 478 ~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTg 557 (1155)
...+..|...++++++++++....+. .+ .......|.+..+.. .+ .++|++.+++++
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~--------~~-----------~~~~~~~~~~~~~~~---~~-~~~~~g~~~~~~ 319 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIA--------SG-----------FDNGFTVLSLGNDEP---TL-SLDPVGKLVWSG 319 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEE--------EE-----------ETTEEEEEECSCCSC---CE-EECSSSEEEEEC
T ss_pred EEEeecCCCcEEEEEEccCCCceEEE--------EE-----------eCCCEEEEEcCCCCc---ee-EECCCCCEEEEC
Confidence 23445566778888876654431111 00 001112232322222 12 677888888887
Q ss_pred ECCCcE---------EEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccc
Q 001109 558 YRDGST---------RIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEE 628 (1155)
Q Consensus 558 s~DgtV---------rlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~ 628 (1155)
+.+... ..|++..+.... ........+...+++++|+|+|++|++++ +|.+.+|++....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~--- 388 (814)
T 3mkq_A 320 GKNAAASDIFTAVIRGNEEVEQDEPLS-------LQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR--- 388 (814)
T ss_dssp CTTSCTTCEEEEECCSCCCCCSSSCBC-------CCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE---
T ss_pred cccccceeeeeeecccccccccCccce-------eeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc---
Confidence 665531 023333222100 00011235666899999999999999998 8999999975421
Q ss_pred ceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCee
Q 001109 629 TLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVL 708 (1155)
Q Consensus 629 ~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~ 708 (1155)
..+.+.|++++|||||++||+++.+|.|++|+. +.+|...|.
T Consensus 389 ---------------------------~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~-----------~~~~~~~v~ 430 (814)
T 3mkq_A 389 ---------------------------NKAFGKCQDFVWGPDSNSYALIDETGQIKYYKN-----------FKEVTSWSV 430 (814)
T ss_dssp ---------------------------EEEEEECSEEEECTTSSCEEEECTTCCEEEEET-----------TEECTTCCC
T ss_pred ---------------------------ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC-----------CCCccceEE
Confidence 123567889999999999999999999999962 235778888
Q ss_pred EEEEeecCCCCccccCCCCCCCCCCCCCCC---cEEEEEeCCceEEEEECCCCceeeeeecc
Q 001109 709 YLAVKSLSDTSNLTISPKDSDINSSNDTKK---ETLFFMTKDAHIVVCDSTTGHILFSRSIH 767 (1155)
Q Consensus 709 slafs~~~~~~~~~~~~~~~~~~~~~~pd~---~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~ 767 (1155)
+++|+ ||+ ..|++++.|++|++||+.+|+++.....+
T Consensus 431 ~~~~s----------------------~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 470 (814)
T 3mkq_A 431 PMHSA----------------------IDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVN 470 (814)
T ss_dssp CCSSC----------------------CCEEECSSSEEEEETTEEEEECTTTCCEEEEESSC
T ss_pred cCCcC----------------------ccceecceEEEEecCCEEEEEECCcCcEEEEEecC
Confidence 89998 777 58999999999999999999998877444
No 17
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=327.17 Aligned_cols=292 Identities=13% Similarity=0.059 Sum_probs=210.9
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCC------------ceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCe
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDN------------IEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNE 106 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~------------~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~ 106 (1155)
.+|+..|++++|+|||++||+|+ |+++++|+... ........+...|.+++|+|+ ++|++++.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCE
Confidence 46778899999999999999887 66777776311 111111223568999999999 57899999999
Q ss_pred EEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 107 IQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 107 I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
|+|||+++++.+..+.. .. .
T Consensus 105 v~lWd~~~~~~~~~~~~------------------------------~~------------~------------------ 124 (344)
T 4gqb_B 105 VELWELDENETLIVSKF------------------------------CK------------Y------------------ 124 (344)
T ss_dssp EEEEEECTTSSCEEEEE------------------------------EE------------E------------------
T ss_pred EEEEeccCCCceeEeec------------------------------cc------------c------------------
Confidence 99999988765432210 00 0
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEE
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVL 266 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~ 266 (1155)
+ |...|.+ ++|+|+ + ++|++|+.||.|++||+.+++++.
T Consensus 125 -----~-----------------------H~~~V~~-----v~~spd--g------~~l~sgs~d~~i~iwd~~~~~~~~ 163 (344)
T 4gqb_B 125 -----E-----------------------HDDIVST-----VSVLSS--G------TQAVSGSKDICIKVWDLAQQVVLS 163 (344)
T ss_dssp -----C-----------------------CSSCEEE-----EEECTT--S------SEEEEEETTSCEEEEETTTTEEEE
T ss_pred -----C-----------------------CCCCEEE-----EEECCC--C------CEEEEEeCCCeEEEEECCCCcEEE
Confidence 0 1222333 888887 3 579999999999999999998876
Q ss_pred EecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCC-eEEEEEcCCcEEEEEcCCCCCccccccCC
Q 001109 267 VRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGS-VLAVGYVDGDILLWNLRAAASTKDWKSEN 345 (1155)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~-~lasg~~DG~I~lWd~~s~~~~~~~~~~~ 345 (1155)
... .|...|++++|+ +++. +|++|+.||+|++||+.++....
T Consensus 164 ~~~------------------------------~h~~~V~~~~~~-~~~~~~l~s~s~D~~v~iwd~~~~~~~~------ 206 (344)
T 4gqb_B 164 SYR------------------------------AHAAQVTCVAAS-PHKDSVFLSCSEDNRILLWDTRCPKPAS------ 206 (344)
T ss_dssp EEC------------------------------CCSSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTSSSCEE------
T ss_pred EEc------------------------------CcCCceEEEEec-CCCCCceeeeccccccccccccccceee------
Confidence 521 157889999999 8874 78999999999999987642100
Q ss_pred CCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCcee
Q 001109 346 SSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFV 425 (1155)
Q Consensus 346 ~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~ 425 (1155)
.+
T Consensus 207 --------------------~~---------------------------------------------------------- 208 (344)
T 4gqb_B 207 --------------------QI---------------------------------------------------------- 208 (344)
T ss_dssp --------------------EC----------------------------------------------------------
T ss_pred --------------------ee----------------------------------------------------------
Confidence 00
Q ss_pred EEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHH
Q 001109 426 DMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVE 505 (1155)
Q Consensus 426 d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~ 505 (1155)
.. ..|...++++++
T Consensus 209 --------------------------~~----------------------------~~~~~~~~~~~~------------ 222 (344)
T 4gqb_B 209 --------------------------GC----------------------------SAPGYLPTSLAW------------ 222 (344)
T ss_dssp --------------------------C--------------------------------CCCEEEEEE------------
T ss_pred --------------------------ec----------------------------ceeeccceeeee------------
Confidence 00 000111222222
Q ss_pred HHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCC-cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcC
Q 001109 506 LSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYL-VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELP 584 (1155)
Q Consensus 506 ~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~-~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~ 584 (1155)
+| ++++|++|+.||+|++||+..+.. +..+.
T Consensus 223 ------------------------------------------~p~~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~---- 254 (344)
T 4gqb_B 223 ------------------------------------------HPQQSEVFVFGDENGTVSLVDTKSTSC--VLSSA---- 254 (344)
T ss_dssp ------------------------------------------CSSCTTEEEEEETTSEEEEEESCC--C--CEEEE----
T ss_pred ------------------------------------------cCCCCcceEEeccCCcEEEEECCCCcE--EEEEc----
Confidence 22 345899999999999999988763 23332
Q ss_pred ccccCCCCCCeEEEEEecCC-CeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeE
Q 001109 585 GIRTATESESVSALEFCSVT-LNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPIC 663 (1155)
Q Consensus 585 ~i~~~gh~~~V~~lafspdg-~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vt 663 (1155)
+|..+|++|+|+|++ ++||+|+.||+|+|||+..+.. ..+.+|.+.|+
T Consensus 255 -----~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~--------------------------~~~~~H~~~V~ 303 (344)
T 4gqb_B 255 -----VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL--------------------------FRSQAHRDFVR 303 (344)
T ss_dssp -----CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE--------------------------EEECCCSSCEE
T ss_pred -----CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE--------------------------EEEcCCCCCEE
Confidence 788899999999998 5799999999999999876421 34578999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEecCCccE
Q 001109 664 NLKFSNFGA-RLAVGFECSQVAMLDISTFSV 693 (1155)
Q Consensus 664 slafSpdg~-~LAsGs~Dg~V~lWDi~~~~~ 693 (1155)
+|+|||+|+ +||+|+.||+|++|++.+...
T Consensus 304 ~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 304 DATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999999987 578999999999999987543
No 18
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-33 Score=325.45 Aligned_cols=358 Identities=12% Similarity=0.107 Sum_probs=253.6
Q ss_pred cCCCCCceEEEEcCCCC-EEEEEEcCCeEEEEcc----CCce------EEEEcC-----------CCCCEEEEEEEcCCc
Q 001109 39 YGIPSTASILAFDHVQS-LLAIGTQDGRIKVIGG----DNIE------GLLVSP-----------KQLAFKHLEFLQNQG 96 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~-lLAsgs~DG~I~vw~~----~~~~------~~~~~~-----------~~~~V~~l~Fs~dg~ 96 (1155)
+.|.+.|++++|+|+|+ +||+|+.||.|+||+. .+.+ ...... |...|.+++|+|++.
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 56779999999999999 9999999999999999 6655 222221 355899999999999
Q ss_pred EEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeee
Q 001109 97 FLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVF 175 (1155)
Q Consensus 97 ~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 175 (1155)
+|++++.|+.|++|| .++..+..+..+ ..|++++|+|++++|++++.+|.|++|++... +... .+..+.....
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~-~~~~~~~~~~-- 195 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG--TVMQ-HFELKETGGS-- 195 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT--EEEE-EECCC-------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC--cEEE-EeeccccCcc--
Confidence 999999999999999 677788888766 78999999999999999999999999976543 2220 0111100000
Q ss_pred ceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEE
Q 001109 176 NHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLII 255 (1155)
Q Consensus 176 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~ 255 (1155)
.+ . . .........+.+ +.|+|+ ..+++++.||.|+
T Consensus 196 -------------~~-~----------------~-~~~~~~~~~~~~-----~~~~~~---------~~~~~~~~~g~i~ 230 (425)
T 1r5m_A 196 -------------SI-N----------------A-ENHSGDGSLGVD-----VEWVDD---------DKFVIPGPKGAIF 230 (425)
T ss_dssp -----------------------------------------CCCBSC-----CEEEET---------TEEEEECGGGCEE
T ss_pred -------------ce-e----------------e-ccccCCcceeeE-----EEEcCC---------CEEEEEcCCCeEE
Confidence 00 0 0 000000112444 889886 3699999999999
Q ss_pred EEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 256 LWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 256 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
+||+.+++.+.... .|...|++++|+ |++++|++|+.||.|++||+.+.
T Consensus 231 ~~d~~~~~~~~~~~------------------------------~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 231 VYQITEKTPTGKLI------------------------------GHHGPISVLEFN-DTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp EEETTCSSCSEEEC------------------------------CCSSCEEEEEEE-TTTTEEEEEETTSCEEEECSSSB
T ss_pred EEEcCCCceeeeec------------------------------cCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCC
Confidence 99999887654311 146789999999 99999999999999999998653
Q ss_pred CCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceecee
Q 001109 336 ASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGR 415 (1155)
Q Consensus 336 ~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~ 415 (1155)
....
T Consensus 280 ~~~~---------------------------------------------------------------------------- 283 (425)
T 1r5m_A 280 NSQN---------------------------------------------------------------------------- 283 (425)
T ss_dssp SCSE----------------------------------------------------------------------------
T ss_pred ccce----------------------------------------------------------------------------
Confidence 1100
Q ss_pred eeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEee
Q 001109 416 VDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCM 495 (1155)
Q Consensus 416 ~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~ 495 (1155)
.+ ..|...|+++
T Consensus 284 -------------------------------------~~---------------------------~~~~~~i~~~---- 295 (425)
T 1r5m_A 284 -------------------------------------CF---------------------------YGHSQSIVSA---- 295 (425)
T ss_dssp -------------------------------------EE---------------------------CCCSSCEEEE----
T ss_pred -------------------------------------Ee---------------------------cCCCccEEEE----
Confidence 00 0012223332
Q ss_pred ecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeee
Q 001109 496 VCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSL 575 (1155)
Q Consensus 496 ~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~ 575 (1155)
.++|++ ++++++.||.|++||+..+..
T Consensus 296 --------------------------------------------------~~~~~~-~l~~~~~d~~i~i~d~~~~~~-- 322 (425)
T 1r5m_A 296 --------------------------------------------------SWVGDD-KVISCSMDGSVRLWSLKQNTL-- 322 (425)
T ss_dssp --------------------------------------------------EEETTT-EEEEEETTSEEEEEETTTTEE--
T ss_pred --------------------------------------------------EECCCC-EEEEEeCCCcEEEEECCCCcE--
Confidence 334556 889999999999999987763
Q ss_pred eeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEe
Q 001109 576 IHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALF 655 (1155)
Q Consensus 576 l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l 655 (1155)
+..+. .|..+|++++|+|++++|++|+.||.|++|++........... ....+.+. .....++..+
T Consensus 323 ~~~~~---------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~ 388 (425)
T 1r5m_A 323 LALSI---------VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY-GNRDGILN----PLPIPLYASY 388 (425)
T ss_dssp EEEEE---------CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-------------------CEECCEEEEE
T ss_pred eEecc---------cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeee-cccccccC----cccchhhhhh
Confidence 23332 5677999999999999999999999999999986531100000 00000000 0011245677
Q ss_pred ecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 001109 656 SVLNS--PICNLKFSNFGARLAVGFECSQVAMLDIS 689 (1155)
Q Consensus 656 ~~h~~--~VtslafSpdg~~LAsGs~Dg~V~lWDi~ 689 (1155)
.+|.. .|++++|+|+|++||+|+.||.|+|||+.
T Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 389 QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 88876 99999999999999999999999999986
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-33 Score=317.89 Aligned_cols=149 Identities=16% Similarity=0.199 Sum_probs=132.1
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+++|++++|++|+.||+|++||+.++.+ +..++ +|..+|++++|+|++++||+|+.||+|++||+....
T Consensus 171 ~~spdg~~lasg~~dg~i~iwd~~~~~~--~~~~~---------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 171 AYSPDGKYLASGAIDGIINIFDIATGKL--LHTLE---------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEE--EEEEC---------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcE--EEEEc---------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 4567788999999999999999988763 33343 788899999999999999999999999999997643
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
+...+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++.++... .+|..
T Consensus 240 -------------------------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~---~~h~~ 291 (321)
T 3ow8_A 240 -------------------------LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF---FDHQD 291 (321)
T ss_dssp -------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSS
T ss_pred -------------------------eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE---cCCCC
Confidence 23467889999999999999999999999999999999999888764 46999
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
+|.+++|+ |+++.|++++.|++|+|||.
T Consensus 292 ~v~~v~~s----------------------~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 292 QVWGVKYN----------------------GNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CEEEEEEC----------------------TTSSEEEEEETTCCEEEEEC
T ss_pred cEEEEEEC----------------------CCCCEEEEEeCCCeEEEEeC
Confidence 99999999 88999999999999999995
No 20
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-33 Score=330.87 Aligned_cols=325 Identities=15% Similarity=0.182 Sum_probs=236.3
Q ss_pred EEccCCceEEEE-cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCC
Q 001109 68 VIGGDNIEGLLV-SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEY 145 (1155)
Q Consensus 68 vw~~~~~~~~~~-~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~d 145 (1155)
.|+.....+... ..|..+|.+++|+|++.+|++++.|++|+|||+.+++...++..| ..|.+++|+|++++|++|+.|
T Consensus 50 ~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 50 SFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp CCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred ccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 344444444333 357889999999999999999999999999999999999999877 789999999999999999999
Q ss_pred CcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCccccccccccccee
Q 001109 146 GMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFV 225 (1155)
Q Consensus 146 G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 225 (1155)
+.|++|++........ ..+.. ..+ ..+...+..
T Consensus 130 ~~v~iw~~~~~~~~~~----~~~~~-----------------~~~-----------------------~gh~~~v~~--- 162 (380)
T 3iz6_a 130 SACSIFNLSSQADRDG----NMPVS-----------------RVL-----------------------TGHKGYASS--- 162 (380)
T ss_dssp SCCEEEECCCCSSCCC----SSTTC-----------------CBC-----------------------CCCSSCCCC---
T ss_pred CcEEEEECCCCccccC----Cccce-----------------eec-----------------------cCCCcceEE---
Confidence 9999998764321000 00000 000 012334445
Q ss_pred eEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCc
Q 001109 226 EIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEI 305 (1155)
Q Consensus 226 ~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 305 (1155)
+.|.|+.. .+|++|+.||+|++||+.+++.+...+. . .. ..|...|
T Consensus 163 --~~~~~~~~-------~~l~s~s~D~~i~~wd~~~~~~~~~~~~-----~--------~~------------~~h~~~v 208 (380)
T 3iz6_a 163 --CQYVPDQE-------TRLITGSGDQTCVLWDVTTGQRISIFGS-----E--------FP------------SGHTADV 208 (380)
T ss_dssp --CBCCSSSS-------SCEEEECTTSCEEEECTTTCCEEEEECC-----C--------SS------------SSCCSCE
T ss_pred --EEEecCCC-------CEEEEECCCCcEEEEEcCCCcEEEEeec-----c--------cC------------CCCccCe
Confidence 88888754 5799999999999999999988765321 0 00 1257889
Q ss_pred cEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEe
Q 001109 306 SSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVF 385 (1155)
Q Consensus 306 ~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~ 385 (1155)
.+++|+++++.+|++|+.||+|++||++....
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~------------------------------------------------ 240 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSR------------------------------------------------ 240 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTCC------------------------------------------------
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCCc------------------------------------------------
Confidence 99999845899999999999999999863210
Q ss_pred cCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccc
Q 001109 386 GGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQ 465 (1155)
Q Consensus 386 gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~ 465 (1155)
.+ ..
T Consensus 241 ---------~~-------------------------------------------------------~~------------ 244 (380)
T 3iz6_a 241 ---------AV-------------------------------------------------------RT------------ 244 (380)
T ss_dssp ---------CC-------------------------------------------------------EE------------
T ss_pred ---------ce-------------------------------------------------------EE------------
Confidence 00 00
Q ss_pred cccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCccccc
Q 001109 466 EKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDA 545 (1155)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~ 545 (1155)
+.+|...|+++
T Consensus 245 ---------------~~~h~~~v~~v------------------------------------------------------ 255 (380)
T 3iz6_a 245 ---------------YHGHEGDINSV------------------------------------------------------ 255 (380)
T ss_dssp ---------------ECCCSSCCCEE------------------------------------------------------
T ss_pred ---------------ECCcCCCeEEE------------------------------------------------------
Confidence 01133334333
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+|+|++++|+||+.||+||+||+..+... ..+..... ....+...|++++|+|+|++|++|+.||.|++||+....
T Consensus 256 ~~~p~~~~l~s~s~D~~i~lwd~~~~~~~--~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQL--QVYNREPD--RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp EECTTSSEEEEECSSSCEEEEETTTTEEE--EEECCCCS--SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred EEecCCCeEEEEcCCCeEEEEECCCCcEE--EEeccccc--ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 45577779999999999999999987633 22221100 011233469999999999999999999999999987643
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTF 691 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~ 691 (1155)
... .+ .....+|.+.|++|+|+|||++||+|+.||+|+|||+.+.
T Consensus 332 ~~~-------------~~--------~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 332 MVL-------------NL--------GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEE-------------EE--------CCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred eEE-------------EE--------ecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 210 00 0112579999999999999999999999999999998764
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-33 Score=328.29 Aligned_cols=145 Identities=18% Similarity=0.181 Sum_probs=121.8
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCC-CeEEEEeCCCeEEEEEeccCcccccee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVT-LNLAIGSSSGLVWLYNLIKSSNEETLN 631 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg-~~Lasgs~dG~V~lwd~~~~~~~~~~~ 631 (1155)
++++++.||+|++||+..+... ..+ ....|...|++++|+|++ .+||+|+.||.|++||+.....
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~--~~~-------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~----- 261 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPA--TRI-------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS----- 261 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCB--CBC-------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG-----
T ss_pred eeeeeccCCceEEEECCCCcee--eee-------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcE-----
Confidence 6889999999999999887632 111 122566789999999985 6789999999999999987432
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEE
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG-ARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYL 710 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg-~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~sl 710 (1155)
...+.+|...|++|+|+|++ ++||+|+.||+|+|||+++++++... +|.++|.+|
T Consensus 262 --------------------~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----~H~~~V~~v 317 (357)
T 4g56_B 262 --------------------AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----SHRDFVTGV 317 (357)
T ss_dssp --------------------CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC----CCSSCEEEE
T ss_pred --------------------eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC----CCCCCEEEE
Confidence 25678899999999999998 57999999999999999999877532 699999999
Q ss_pred EEeecCCCCccccCCCCCCCCCCCCC-CCcEEEEEeCCceEEEEECCC
Q 001109 711 AVKSLSDTSNLTISPKDSDINSSNDT-KKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 711 afs~~~~~~~~~~~~~~~~~~~~~~p-d~~~L~s~s~Dg~I~vwd~~t 757 (1155)
+|+ | |+++|++++.|++|++||+.+
T Consensus 318 afs----------------------P~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 318 AWS----------------------PLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEC----------------------SSSTTEEEEEETTSCEEEEECC-
T ss_pred EEe----------------------CCCCCEEEEEcCCCeEEEEECCC
Confidence 998 6 789999999999999999865
No 22
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=324.07 Aligned_cols=148 Identities=19% Similarity=0.188 Sum_probs=119.5
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecC-CCeEEEEeCCCeEEEEEeccCcccccee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSV-TLNLAIGSSSGLVWLYNLIKSSNEETLN 631 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspd-g~~Lasgs~dG~V~lwd~~~~~~~~~~~ 631 (1155)
+|+||+.||+|++||+..+... ..+. ...|...+++++|+|+ +.+||+|+.||+|++||+..+.
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~--~~~~-------~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~------ 248 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPA--SQIG-------CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS------ 248 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCE--EECC-----------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------
T ss_pred ceeeecccccccccccccccee--eeee-------cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc------
Confidence 7899999999999999887632 2222 1245568999999995 5678999999999999998743
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEE
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG-ARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYL 710 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg-~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~sl 710 (1155)
++..+.+|...|++|+|+|+| ++||+|+.||+|+|||+.++.++. +.+|.++|.+|
T Consensus 249 -------------------~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~----~~~H~~~V~~v 305 (344)
T 4gqb_B 249 -------------------CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR----SQAHRDFVRDA 305 (344)
T ss_dssp -------------------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE----ECCCSSCEEEE
T ss_pred -------------------EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE----EcCCCCCEEEE
Confidence 235678999999999999998 579999999999999999987653 35799999999
Q ss_pred EEeecCCCCccccCCCCCCCCCCCCCCCc-EEEEEeCCceEEEEECCCCce
Q 001109 711 AVKSLSDTSNLTISPKDSDINSSNDTKKE-TLFFMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 711 afs~~~~~~~~~~~~~~~~~~~~~~pd~~-~L~s~s~Dg~I~vwd~~tG~~ 760 (1155)
+|+ |+++ +|++++.|++|++|++.+..+
T Consensus 306 ~~s----------------------p~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 306 TWS----------------------PLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEC----------------------SSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEe----------------------CCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999 7765 677999999999999987544
No 23
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=339.27 Aligned_cols=365 Identities=12% Similarity=0.145 Sum_probs=258.4
Q ss_pred CCCceEEEEcCCCC-EEEEE----------EcCCeEEEEccCCce---EEEEcCCCCCEEEEEEEcCCcEEEEEecCCeE
Q 001109 42 PSTASILAFDHVQS-LLAIG----------TQDGRIKVIGGDNIE---GLLVSPKQLAFKHLEFLQNQGFLVSISSGNEI 107 (1155)
Q Consensus 42 ~~~vs~lafsp~g~-lLAsg----------s~DG~I~vw~~~~~~---~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I 107 (1155)
...|++++|+|+|+ +||+| +.||.|+||+..+.. .+....+...|.+++|+|++.+|++++.|+.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence 35689999999997 99999 889999999987653 33444577899999999999999999999999
Q ss_pred EEEECCC----CceeeeecCC-CceeEEEEecC-CCEEEEEeCCCcEEEEEecCCCceeec-cceeccCCceeeeceeEe
Q 001109 108 QLWDLEA----RRITSTLPWE-SNITAFSVIFG-TSYMYIGDEYGMVYVLKYDTEEGKLIH-SPYYVPKDVIEVFNHLLL 180 (1155)
Q Consensus 108 ~vWDl~t----~~~~~~l~~~-~~Vtsva~spd-~~~l~~G~~dG~V~vw~~d~~~~~l~~-~~~~i~~~~~~~~~~~~l 180 (1155)
++||+.+ ...+..+..| ..|++++|+|+ +++|++|+.||.|++|++......... .++.+.
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~------------ 159 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG------------ 159 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC------------
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc------------
Confidence 9999998 3577777766 78999999998 899999999999999966543210000 000000
Q ss_pred eEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEcc
Q 001109 181 EFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVS 260 (1155)
Q Consensus 181 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~ 260 (1155)
....+...+.+ ++|+|+.. .+|++++.||.|++||+.
T Consensus 160 -------------------------------~~~~~~~~v~~-----~~~~~~~~-------~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 160 -------------------------------QSMSSVDEVIS-----LAWNQSLA-------HVFASAGSSNFASIWDLK 196 (416)
T ss_dssp -------------------------------CSCCSSCCCCE-----EEECSSCT-------TEEEEESSSSCEEEEETT
T ss_pred -------------------------------cccCCCCCeeE-----EEeCCCCC-------cEEEEEcCCCCEEEEECC
Confidence 00012344455 99999743 579999999999999999
Q ss_pred CCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCC-CeEEEEEcCC---cEEEEEcCCCC
Q 001109 261 EDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDG-SVLAVGYVDG---DILLWNLRAAA 336 (1155)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG-~~lasg~~DG---~I~lWd~~s~~ 336 (1155)
+++.+..... +. .. ..|...|++++|+ |+| .+|++++.|| .|++||+.+..
T Consensus 197 ~~~~~~~~~~-----~~-------~~------------~~~~~~v~~~~~~-~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 197 AKKEVIHLSY-----TS-------PN------------SGIKQQLSVVEWH-PKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp TTEEEEEECC-----CC-------CS------------SCCCCCEEEEEEC-SSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred CCCcceEEec-----cc-------cc------------cccCCceEEEEEC-CCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 9988765221 00 00 0136789999999 887 6899999999 99999987531
Q ss_pred CccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceee
Q 001109 337 STKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRV 416 (1155)
Q Consensus 337 ~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~ 416 (1155)
....
T Consensus 252 ~~~~---------------------------------------------------------------------------- 255 (416)
T 2pm9_A 252 TPLQ---------------------------------------------------------------------------- 255 (416)
T ss_dssp SCSB----------------------------------------------------------------------------
T ss_pred CCcE----------------------------------------------------------------------------
Confidence 1000
Q ss_pred eecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccc-cCCCcceEEEEee
Q 001109 417 DLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIP-TIEPHMTVGKLCM 495 (1155)
Q Consensus 417 ~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~-~h~~~It~~~~~~ 495 (1155)
.+. .|...|++++
T Consensus 256 ---------------------------------------------------------------~~~~~~~~~v~~~~--- 269 (416)
T 2pm9_A 256 ---------------------------------------------------------------TLNQGHQKGILSLD--- 269 (416)
T ss_dssp ---------------------------------------------------------------CCCSCCSSCEEEEE---
T ss_pred ---------------------------------------------------------------EeecCccCceeEEE---
Confidence 000 1223333333
Q ss_pred ecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCC-cCcEEEEEECCCcEEEEeCCCCCee
Q 001109 496 VCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYL-VERLYIAGYRDGSTRIWDATYPTLS 574 (1155)
Q Consensus 496 ~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~-~~~lLaTgs~DgtVrlWD~~~~~l~ 574 (1155)
|+| ++++|++|+.||+|++||+..+..
T Consensus 270 ---------------------------------------------------~s~~~~~~l~s~~~dg~v~~wd~~~~~~- 297 (416)
T 2pm9_A 270 ---------------------------------------------------WCHQDEHLLLSSGRDNTVLLWNPESAEQ- 297 (416)
T ss_dssp ---------------------------------------------------ECSSCSSCEEEEESSSEEEEECSSSCCE-
T ss_pred ---------------------------------------------------eCCCCCCeEEEEeCCCCEEEeeCCCCcc-
Confidence 334 566899999999999999988763
Q ss_pred eeeeeCCCcCccccCCCCCCeEEEEEecCC-CeEEEEeCCCeEEEEEeccCccccceee--eccCCceEEEe-------c
Q 001109 575 LIHVFGSELPGIRTATESESVSALEFCSVT-LNLAIGSSSGLVWLYNLIKSSNEETLNL--VTETGKEVHIL-------P 644 (1155)
Q Consensus 575 ~l~~l~~~~~~i~~~gh~~~V~~lafspdg-~~Lasgs~dG~V~lwd~~~~~~~~~~~~--v~~~~~~~~~~-------~ 644 (1155)
+..+. +|..+|++++|+|++ .+|++++.||.|++|++........... ..........+ +
T Consensus 298 -~~~~~---------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (416)
T 2pm9_A 298 -LSQFP---------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREES 367 (416)
T ss_dssp -EEEEE---------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------C
T ss_pred -ceeec---------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccc
Confidence 33332 677899999999999 8999999999999999987643211100 00000000000 0
Q ss_pred --CCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q 001109 645 --GGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTF 691 (1155)
Q Consensus 645 --~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~ 691 (1155)
....+.+ .....|..+|++++|||||++||+|+.||+|+|||+.+.
T Consensus 368 ~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 368 KEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 0001112 222347889999999999999999999999999998763
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9e-33 Score=316.06 Aligned_cols=201 Identities=16% Similarity=0.195 Sum_probs=164.4
Q ss_pred cCCCCCceEEEEcCC----CCEEEEEEcCCeEEEEccCCceEE--EE-cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEE
Q 001109 39 YGIPSTASILAFDHV----QSLLAIGTQDGRIKVIGGDNIEGL--LV-SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~----g~lLAsgs~DG~I~vw~~~~~~~~--~~-~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWD 111 (1155)
.||.+.|++++|+|+ +++||+|+.||+|+||+....... .. ..|...|.+++|++++.++++++.|++|++||
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 699999999999985 679999999999999997655432 22 35788999999999999999999999999999
Q ss_pred CCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccc
Q 001109 112 LEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQRE 190 (1155)
Q Consensus 112 l~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~ 190 (1155)
+.+++++..+..+ ..+.+++|+|++++|++|+.+|.|++|++...... +.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~-----~~~~~--------------------- 162 (321)
T 3ow8_A 109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE-----YSLDT--------------------- 162 (321)
T ss_dssp TTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE-----EEEEC---------------------
T ss_pred CCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee-----EEecC---------------------
Confidence 9999999888765 67899999999999999999999999976553311 00000
Q ss_pred ccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecc
Q 001109 191 KGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGS 270 (1155)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~ 270 (1155)
+... |.+++|+|++ ++|++|+.||.|++||+.+++++....
T Consensus 163 -------------------------~~~~-----v~~~~~spdg--------~~lasg~~dg~i~iwd~~~~~~~~~~~- 203 (321)
T 3ow8_A 163 -------------------------RGKF-----ILSIAYSPDG--------KYLASGAIDGIINIFDIATGKLLHTLE- 203 (321)
T ss_dssp -------------------------SSSC-----EEEEEECTTS--------SEEEEEETTSCEEEEETTTTEEEEEEC-
T ss_pred -------------------------CCce-----EEEEEECCCC--------CEEEEEcCCCeEEEEECCCCcEEEEEc-
Confidence 1122 3349999984 679999999999999999998876521
Q ss_pred cccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 271 KDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
.|...|++++|+ |||++|++|+.||.|++||+.+
T Consensus 204 -----------------------------~h~~~v~~l~~s-pd~~~l~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 204 -----------------------------GHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQH 237 (321)
T ss_dssp -----------------------------CCSSCCCEEEEC-TTSCEEEEECTTSCEEEEETTT
T ss_pred -----------------------------ccCCceeEEEEc-CCCCEEEEEcCCCeEEEEECCC
Confidence 147789999999 9999999999999999999864
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-32 Score=313.81 Aligned_cols=178 Identities=13% Similarity=0.099 Sum_probs=129.9
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+++|++++|++|+.|++|++||...+...+...+. +|..+|++|+|+|+|++||+|+.||+|++|+.....
T Consensus 157 ~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~---------~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~ 227 (345)
T 3fm0_A 157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLE---------GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG 227 (345)
T ss_dssp EECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTT
T ss_pred EECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec---------CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCC
Confidence 44566778999999999999998876543333333 788999999999999999999999999999975432
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCcc------EEEEec
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSV-LNSPICNLKFSNFGARLAVGFECSQVAMLDISTFS------VLFITD 698 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~-h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~------~l~~~~ 698 (1155)
.......... .....|+..+.+ |...|++|+|+|++..||+|+.|+.|+|||..... .....+
T Consensus 228 ~~~~~~~~~~----------~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 228 NEQGVACSGS----------DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp CTTCCCCC-------------CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred CCccceeecc----------CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 2111100000 011123445555 88999999999999999999999999999987542 111122
Q ss_pred cCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCC-cEEEEEeCCceEEEEECCCCceeeee
Q 001109 699 SLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKK-ETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 699 ~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~-~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
...+|..+|.+|+|+ |++ .+|++|+.||+|++|+..+++.+...
T Consensus 298 ~~~~h~~~V~~v~~~----------------------p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWN----------------------PKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp ETTSSSSCEEEEEEC----------------------SSSTTEEEEEETTSCEEEEEECC-------
T ss_pred ecccccCcEeEeEEe----------------------CCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 345799999999999 766 59999999999999999987765443
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-32 Score=312.69 Aligned_cols=205 Identities=19% Similarity=0.201 Sum_probs=164.3
Q ss_pred cCCCC-CceEEEEcCCCCEEEEEEcCCeEEEEccCCceEE----EEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECC
Q 001109 39 YGIPS-TASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGL----LVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLE 113 (1155)
Q Consensus 39 ~G~~~-~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~----~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~ 113 (1155)
.||+. .|.+++|+|+|++||+|+.||+|+||+..+.... ....|...|.+|+|+|++.+|++++.|++|++||+.
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~ 91 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence 58887 8999999999999999999999999998765432 223578899999999999999999999999999998
Q ss_pred CCc--eeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccc
Q 001109 114 ARR--ITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQRE 190 (1155)
Q Consensus 114 t~~--~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~ 190 (1155)
++. ++.++..| ..|++++|+|++++|++|+.||+|++|+++....... +. . +
T Consensus 92 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~-----~~--~------------------~ 146 (345)
T 3fm0_A 92 QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC-----VS--V------------------L 146 (345)
T ss_dssp CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE-----EE--E------------------E
T ss_pred CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE-----EE--E------------------e
Confidence 774 56778777 7899999999999999999999999998765431100 00 0 0
Q ss_pred ccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecc
Q 001109 191 KGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGS 270 (1155)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~ 270 (1155)
.+ +...|. +++|+|++ ++|++|+.||.|++||..++.......
T Consensus 147 ~~-----------------------h~~~v~-----~~~~~p~~--------~~l~s~s~d~~i~~w~~~~~~~~~~~~- 189 (345)
T 3fm0_A 147 NS-----------------------HTQDVK-----HVVWHPSQ--------ELLASASYDDTVKLYREEEDDWVCCAT- 189 (345)
T ss_dssp CC-----------------------CCSCEE-----EEEECSSS--------SCEEEEETTSCEEEEEEETTEEEEEEE-
T ss_pred cC-----------------------cCCCeE-----EEEECCCC--------CEEEEEeCCCcEEEEEecCCCEEEEEE-
Confidence 00 123334 49999984 569999999999999998876543211
Q ss_pred cccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcC
Q 001109 271 KDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~ 333 (1155)
+. .|...|++++|+ |+|++||+|+.||+|++|+..
T Consensus 190 ----~~-----------------------~h~~~v~~l~~s-p~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 190 ----LE-----------------------GHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp ----EC-----------------------CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEEE
T ss_pred ----ec-----------------------CCCCceEEEEEC-CCCCEEEEEeCCCeEEEeccc
Confidence 11 257889999999 999999999999999999864
No 27
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.6e-32 Score=316.49 Aligned_cols=290 Identities=14% Similarity=0.199 Sum_probs=224.1
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
.|..+|.+++|+|++.+|++++.|++|+|||..+++....+..+ ..|.+++|+|++.++++|+.|+.+++|++......
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 57889999999999999999999999999999999888888766 78999999999999999999999999977653211
Q ss_pred eeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccc
Q 001109 160 LIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNST 239 (1155)
Q Consensus 160 l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~ 239 (1155)
.. ......+ ..+... |.++.|+|++
T Consensus 142 ~~----~~~~~~~-----------------------------------------~~h~~~-----v~~~~~~~~~----- 166 (354)
T 2pbi_B 142 NM----AAKKKSV-----------------------------------------AMHTNY-----LSACSFTNSD----- 166 (354)
T ss_dssp CS----GGGCEEE-----------------------------------------EECSSC-----EEEEEECSSS-----
T ss_pred cc----cccceee-----------------------------------------eccCCc-----EEEEEEeCCC-----
Confidence 00 0000000 001233 3449999974
Q ss_pred ccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEec--CCCe
Q 001109 240 LGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASN--DGSV 317 (1155)
Q Consensus 240 ~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~p--dG~~ 317 (1155)
.+|++++.||+|++||+.+++++.... .|...|.+++|+ | +|.+
T Consensus 167 ---~~l~t~s~D~~v~lwd~~~~~~~~~~~------------------------------~h~~~v~~~~~~-~~~~g~~ 212 (354)
T 2pbi_B 167 ---MQILTASGDGTCALWDVESGQLLQSFH------------------------------GHGADVLCLDLA-PSETGNT 212 (354)
T ss_dssp ---SEEEEEETTSEEEEEETTTCCEEEEEE------------------------------CCSSCEEEEEEC-CCSSCCE
T ss_pred ---CEEEEEeCCCcEEEEeCCCCeEEEEEc------------------------------CCCCCeEEEEEE-eCCCCCE
Confidence 579999999999999999998876521 147789999997 5 5789
Q ss_pred EEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEE
Q 001109 318 LAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLT 397 (1155)
Q Consensus 318 lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~lt 397 (1155)
|++|+.||.|++||+.++.. +.
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~----------------------------------------------------------~~ 234 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQC----------------------------------------------------------VQ 234 (354)
T ss_dssp EEEEETTSCEEEEETTTCCE----------------------------------------------------------EE
T ss_pred EEEEeCCCeEEEEECCCCcE----------------------------------------------------------EE
Confidence 99999999999999865311 00
Q ss_pred EEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccC
Q 001109 398 MLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQY 477 (1155)
Q Consensus 398 vl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~ 477 (1155)
.+
T Consensus 235 -------------------------------------------------------~~----------------------- 236 (354)
T 2pbi_B 235 -------------------------------------------------------AF----------------------- 236 (354)
T ss_dssp -------------------------------------------------------EE-----------------------
T ss_pred -------------------------------------------------------Ee-----------------------
Confidence 00
Q ss_pred CcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEE
Q 001109 478 PMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAG 557 (1155)
Q Consensus 478 ~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTg 557 (1155)
..|...|+++ +|+|++++|+||
T Consensus 237 ----~~h~~~v~~v------------------------------------------------------~~~p~~~~l~s~ 258 (354)
T 2pbi_B 237 ----ETHESDVNSV------------------------------------------------------RYYPSGDAFASG 258 (354)
T ss_dssp ----CCCSSCEEEE------------------------------------------------------EECTTSSEEEEE
T ss_pred ----cCCCCCeEEE------------------------------------------------------EEeCCCCEEEEE
Confidence 0133334433 345667789999
Q ss_pred ECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCC
Q 001109 558 YRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETG 637 (1155)
Q Consensus 558 s~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~ 637 (1155)
+.|++||+||+...... ..+.. ..+...+++++|+|++++|++|+.||.|++||+..+..
T Consensus 259 s~D~~v~lwd~~~~~~~--~~~~~-------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~----------- 318 (354)
T 2pbi_B 259 SDDATCRLYDLRADREV--AIYSK-------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR----------- 318 (354)
T ss_dssp ETTSCEEEEETTTTEEE--EEECC-------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-----------
T ss_pred eCCCeEEEEECCCCcEE--EEEcC-------CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce-----------
Confidence 99999999999876532 22221 12345799999999999999999999999999976432
Q ss_pred ceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001109 638 KEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLD 687 (1155)
Q Consensus 638 ~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWD 687 (1155)
+..+.+|.+.|++|+|+|||++||+|+.||+|+||+
T Consensus 319 --------------~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 319 --------------VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp --------------EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred --------------EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 245678999999999999999999999999999996
No 28
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.7e-32 Score=321.59 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=121.7
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCC-eEEEEeCCCeEEEEEeccC
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTL-NLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~-~Lasgs~dG~V~lwd~~~~ 624 (1155)
+|+|++++|++|+.||+|++||+..+.. +..+. .+|..+|++++|+|++. +|++|+.||.|++||+...
T Consensus 254 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~--------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 254 EFGTYGKYVIAGHVSGVITVHNVFSKEQ--TIQLP--------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp CSSCTTEEEEEEETTSCEEEEETTTCCE--EEEEC--------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCCce--eEEcc--------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 7889999999999999999999988762 22221 25778999999999999 9999999999999999875
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccE---EEE---e
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSV-LNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSV---LFI---T 697 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~-h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~---l~~---~ 697 (1155)
.. +...+.. |...|+++.+ |++++||+|+.||+|+|||+..+.. +.. .
T Consensus 324 ~~------------------------~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~ 378 (420)
T 3vl1_A 324 EC------------------------PVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETP 378 (420)
T ss_dssp TS------------------------CSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSC
T ss_pred cC------------------------chhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCc
Confidence 32 1134455 6778888855 5788999999999999999887321 110 0
Q ss_pred ccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCc---EEEEEeCCceEEEEECCC
Q 001109 698 DSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKE---TLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 698 ~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~---~L~s~s~Dg~I~vwd~~t 757 (1155)
..+.+|...|.+++|+ ||++ .|++.+.+|.+.+|+++.
T Consensus 379 ~~~~~~~~~v~~~~~s----------------------~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 379 TFLVSNDDAVSQFCYV----------------------SDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEECCSSCCCCEEEEE----------------------CCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cEEccCCcceEEEEEc----------------------cCCCCcceEEEEcCCceEEEEeccC
Confidence 1124688999999999 6677 677778899999999864
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-32 Score=318.22 Aligned_cols=353 Identities=16% Similarity=0.162 Sum_probs=249.8
Q ss_pred EEEEccCCceEE-EEcCCCCCEEEEEEEcCCc-EEEEEecCCeEEEEEC----CCCc------eeeeecC----------
Q 001109 66 IKVIGGDNIEGL-LVSPKQLAFKHLEFLQNQG-FLVSISSGNEIQLWDL----EARR------ITSTLPW---------- 123 (1155)
Q Consensus 66 I~vw~~~~~~~~-~~~~~~~~V~~l~Fs~dg~-~LvS~s~Dg~I~vWDl----~t~~------~~~~l~~---------- 123 (1155)
+.+|+....... ..+.|..+|.+++|+|++. +|++++.|+.|++||+ .+++ ....+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (425)
T 1r5m_A 27 DSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGK 106 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-----
T ss_pred cccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccC
Confidence 345665443333 3334567999999999999 9999999999999999 8887 4444443
Q ss_pred C-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceee
Q 001109 124 E-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLF 202 (1155)
Q Consensus 124 ~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 202 (1155)
+ +.|++++|+|++++|++|+.+|.|++|+.+ +... ..+. +
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~---~~~~---~~~~-----------------------~---------- 147 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT---GALL---NVLN-----------------------F---------- 147 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT---SCEE---EEEC-----------------------C----------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCee---eecc-----------------------C----------
Confidence 3 489999999999999999999999999622 1111 0000 0
Q ss_pred ecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccC
Q 001109 203 YCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDD 282 (1155)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 282 (1155)
+...+.+ ++|+|++ ++|++++.||.|++||+.+++.+..... +..
T Consensus 148 -------------~~~~v~~-----~~~~~~~--------~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~---- 192 (425)
T 1r5m_A 148 -------------HRAPIVS-----VKWNKDG--------THIISMDVENVTILWNVISGTVMQHFEL-----KET---- 192 (425)
T ss_dssp -------------CCSCEEE-----EEECTTS--------SEEEEEETTCCEEEEETTTTEEEEEECC-----C------
T ss_pred -------------CCccEEE-----EEECCCC--------CEEEEEecCCeEEEEECCCCcEEEEeec-----ccc----
Confidence 1233444 9999974 5799999999999999999988765221 000
Q ss_pred CCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCc
Q 001109 283 PSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRL 362 (1155)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~ 362 (1155)
. .... .......+...+.+++|+ +++ .+++|+.||.|++||+.+.....
T Consensus 193 ~----~~~~--~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~g~i~~~d~~~~~~~~----------------------- 241 (425)
T 1r5m_A 193 G----GSSI--NAENHSGDGSLGVDVEWV-DDD-KFVIPGPKGAIFVYQITEKTPTG----------------------- 241 (425)
T ss_dssp -------------------CCCBSCCEEE-ETT-EEEEECGGGCEEEEETTCSSCSE-----------------------
T ss_pred C----ccce--eeccccCCcceeeEEEEc-CCC-EEEEEcCCCeEEEEEcCCCceee-----------------------
Confidence 0 0000 000000112338899998 664 58889999999999986531100
Q ss_pred cEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeE
Q 001109 363 PVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLP 442 (1155)
Q Consensus 363 pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l 442 (1155)
.
T Consensus 242 ---~---------------------------------------------------------------------------- 242 (425)
T 1r5m_A 242 ---K---------------------------------------------------------------------------- 242 (425)
T ss_dssp ---E----------------------------------------------------------------------------
T ss_pred ---e----------------------------------------------------------------------------
Confidence 0
Q ss_pred EEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCC
Q 001109 443 CVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPS 522 (1155)
Q Consensus 443 ~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s 522 (1155)
+..|...|+++
T Consensus 243 --------------------------------------~~~~~~~i~~~------------------------------- 253 (425)
T 1r5m_A 243 --------------------------------------LIGHHGPISVL------------------------------- 253 (425)
T ss_dssp --------------------------------------ECCCSSCEEEE-------------------------------
T ss_pred --------------------------------------eccCCCceEEE-------------------------------
Confidence 00022223333
Q ss_pred ccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEec
Q 001109 523 TQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCS 602 (1155)
Q Consensus 523 ~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafsp 602 (1155)
+++|++++|++|+.||.|++||+..+... ..+ .+|..+|.+++|+|
T Consensus 254 -----------------------~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~---------~~~~~~i~~~~~~~ 299 (425)
T 1r5m_A 254 -----------------------EFNDTNKLLLSASDDGTLRIWHGGNGNSQ--NCF---------YGHSQSIVSASWVG 299 (425)
T ss_dssp -----------------------EEETTTTEEEEEETTSCEEEECSSSBSCS--EEE---------CCCSSCEEEEEEET
T ss_pred -----------------------EECCCCCEEEEEcCCCEEEEEECCCCccc--eEe---------cCCCccEEEEEECC
Confidence 33456668999999999999999876522 222 26778999999999
Q ss_pred CCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 001109 603 VTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQ 682 (1155)
Q Consensus 603 dg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~ 682 (1155)
++ +|++++.||.|++||+.... +...+..|..+|++++|+|+|++||+|+.||.
T Consensus 300 ~~-~l~~~~~d~~i~i~d~~~~~-------------------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 300 DD-KVISCSMDGSVRLWSLKQNT-------------------------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp TT-EEEEEETTSEEEEEETTTTE-------------------------EEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred CC-EEEEEeCCCcEEEEECCCCc-------------------------EeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 99 99999999999999997643 22456789999999999999999999999999
Q ss_pred EEEEecCCcc--------------------EEEEeccCCCCCC--CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcE
Q 001109 683 VAMLDISTFS--------------------VLFITDSLSNSNS--PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKET 740 (1155)
Q Consensus 683 V~lWDi~~~~--------------------~l~~~~~~~~h~~--~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~ 740 (1155)
|+|||+.++. .+... .+|.. +|.+++|+ ||+++
T Consensus 354 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s----------------------~~~~~ 408 (425)
T 1r5m_A 354 VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY---QSSQDNDYIFDLSWN----------------------CAGNK 408 (425)
T ss_dssp EEEEECHHHHC--------------CEECCEEEEE---CCTTCCCCEEEEEEC----------------------TTSSE
T ss_pred EEEEECCCCccceeeeecccccccCcccchhhhhh---cCcccCCceEEEEcc----------------------CCCce
Confidence 9999999887 66544 45766 99999999 89999
Q ss_pred EEEEeCCceEEEEECC
Q 001109 741 LFFMTKDAHIVVCDST 756 (1155)
Q Consensus 741 L~s~s~Dg~I~vwd~~ 756 (1155)
|++++.||+|++||+.
T Consensus 409 l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 409 ISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEESSSCCEEEECC
T ss_pred EEEEecCceEEEEeec
Confidence 9999999999999975
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.6e-32 Score=306.22 Aligned_cols=322 Identities=11% Similarity=0.107 Sum_probs=248.0
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc-eEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceee
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI-EGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITS 119 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~-~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~ 119 (1155)
+.+.|.+++|+|+|+++|++..++.+.+|..... ..+....|..+|.+++|+|++.+|++++ |+.|++||+.++....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 3467999999999999999998888777765543 3344457888999999999999999998 9999999999875432
Q ss_pred ---eec---CCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccc
Q 001109 120 ---TLP---WESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGK 193 (1155)
Q Consensus 120 ---~l~---~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~ 193 (1155)
.+. ....|++++|+|++++|++|+.+|.|++|+++....... ..+. .
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~-----------------------~- 139 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK---AELT-----------------------S- 139 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE---EEEE-----------------------C-
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee---eecc-----------------------c-
Confidence 222 347899999999999999999999999997765331111 0000 0
Q ss_pred cccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccc
Q 001109 194 AAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDL 273 (1155)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~ 273 (1155)
+...+.+ +.|+|++ ++|++++.||.|++||+.+++.+....
T Consensus 140 ----------------------~~~~i~~-----~~~~~~~--------~~l~~~~~dg~v~~~d~~~~~~~~~~~---- 180 (337)
T 1gxr_A 140 ----------------------SAPACYA-----LAISPDS--------KVCFSCCSDGNIAVWDLHNQTLVRQFQ---- 180 (337)
T ss_dssp ----------------------SSSCEEE-----EEECTTS--------SEEEEEETTSCEEEEETTTTEEEEEEC----
T ss_pred ----------------------CCCceEE-----EEECCCC--------CEEEEEeCCCcEEEEeCCCCceeeeee----
Confidence 1223334 9999973 579999999999999999988776421
Q ss_pred ccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccc
Q 001109 274 QLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKL 353 (1155)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl 353 (1155)
.|...|.+++|+ |+|++|++++.||.|++||+.++..
T Consensus 181 --------------------------~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~---------------- 217 (337)
T 1gxr_A 181 --------------------------GHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQ---------------- 217 (337)
T ss_dssp --------------------------CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE----------------
T ss_pred --------------------------cccCceEEEEEC-CCCCEEEEEecCCcEEEEECCCCce----------------
Confidence 146789999999 9999999999999999999864310
Q ss_pred cccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCC
Q 001109 354 QLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNG 433 (1155)
Q Consensus 354 ~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~ 433 (1155)
+.
T Consensus 218 ------------------------------------------~~------------------------------------ 219 (337)
T 1gxr_A 218 ------------------------------------------LQ------------------------------------ 219 (337)
T ss_dssp ------------------------------------------EE------------------------------------
T ss_pred ------------------------------------------Ee------------------------------------
Confidence 00
Q ss_pred CCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhh
Q 001109 434 MNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAA 513 (1155)
Q Consensus 434 ~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~ 513 (1155)
.+. +...++++
T Consensus 220 -------------------~~~----------------------------~~~~v~~~---------------------- 230 (337)
T 1gxr_A 220 -------------------QHD----------------------------FTSQIFSL---------------------- 230 (337)
T ss_dssp -------------------EEE----------------------------CSSCEEEE----------------------
T ss_pred -------------------eec----------------------------CCCceEEE----------------------
Confidence 000 00111111
Q ss_pred ccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCC
Q 001109 514 KVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESE 593 (1155)
Q Consensus 514 ~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~ 593 (1155)
+++|+++++++|+.||.|++||+..+.. ..+ .+|..
T Consensus 231 --------------------------------~~s~~~~~l~~~~~~~~i~~~~~~~~~~---~~~---------~~~~~ 266 (337)
T 1gxr_A 231 --------------------------------GYCPTGEWLAVGMESSNVEVLHVNKPDK---YQL---------HLHES 266 (337)
T ss_dssp --------------------------------EECTTSSEEEEEETTSCEEEEETTSSCE---EEE---------CCCSS
T ss_pred --------------------------------EECCCCCEEEEEcCCCcEEEEECCCCCe---EEE---------cCCcc
Confidence 3456777899999999999999988763 222 26778
Q ss_pred CeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCE
Q 001109 594 SVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGAR 673 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~ 673 (1155)
+|++++|+|++++|++++.||.|++|++..+.. .....|...|++++|+|++++
T Consensus 267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~--------------------------~~~~~~~~~v~~~~~s~~~~~ 320 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--------------------------IFQSKESSSVLSCDISVDDKY 320 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------------------------EEEEECSSCEEEEEECTTSCE
T ss_pred ceeEEEECCCCCEEEEecCCCcEEEEECCCCeE--------------------------EEEecCCCcEEEEEECCCCCE
Confidence 999999999999999999999999999987532 122458899999999999999
Q ss_pred EEEEeCCCcEEEEecC
Q 001109 674 LAVGFECSQVAMLDIS 689 (1155)
Q Consensus 674 LAsGs~Dg~V~lWDi~ 689 (1155)
|++|+.||.|++||+.
T Consensus 321 l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 321 IVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEETTSCEEEEEEE
T ss_pred EEEecCCCeEEEEEEe
Confidence 9999999999999963
No 31
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-31 Score=303.49 Aligned_cols=147 Identities=12% Similarity=0.125 Sum_probs=118.7
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEec--CCCeEEEEeCCCeEEEEEeccCccc
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCS--VTLNLAIGSSSGLVWLYNLIKSSNE 627 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafsp--dg~~Lasgs~dG~V~lwd~~~~~~~ 627 (1155)
++.+|+||+.||+|++||+..+... ..+. .+|...|..++|+| ++.+|++|+.||+|++||+..+.
T Consensus 152 ~~~~l~sgs~D~~v~iwd~~~~~~~--~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-- 219 (304)
T 2ynn_A 152 DPSTFASGCLDRTVKVWSLGQSTPN--FTLT--------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-- 219 (304)
T ss_dssp CTTEEEEEETTSEEEEEETTCSSCS--EEEE--------CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE--
T ss_pred CCCEEEEEeCCCeEEEEECCCCCcc--ceec--------cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc--
Confidence 3458999999999999999766522 2221 25666899999987 78899999999999999998742
Q ss_pred cceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCe
Q 001109 628 ETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPV 707 (1155)
Q Consensus 628 ~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V 707 (1155)
+...+.+|...|++++|+|++++||+|+.||+|+|||+.+++++.... .|...|
T Consensus 220 -----------------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~~~~~~ 273 (304)
T 2ynn_A 220 -----------------------CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLERS 273 (304)
T ss_dssp -----------------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC---CSSSSE
T ss_pred -----------------------cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc---CCCccE
Confidence 345778999999999999999999999999999999999998887653 588999
Q ss_pred eEEEEeecCCCCccccCCCCCCCCCCCCCCCc--EEEEEeCCceEEEEECCC
Q 001109 708 LYLAVKSLSDTSNLTISPKDSDINSSNDTKKE--TLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 708 ~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~--~L~s~s~Dg~I~vwd~~t 757 (1155)
++++|+ |++. +|++|+.|| +.+|++..
T Consensus 274 ~~~~~~----------------------~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 274 WCIATH----------------------PTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEEEEC----------------------TTCGGGCEEEEETTE-EEEEECC-
T ss_pred EEEEEC----------------------CCCCceEEEEecCCc-eEEEEecc
Confidence 999998 4443 477776665 66777654
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-32 Score=316.36 Aligned_cols=321 Identities=12% Similarity=0.087 Sum_probs=209.2
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEec------CCeEEEEECCCCceee
Q 001109 46 SILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISS------GNEIQLWDLEARRITS 119 (1155)
Q Consensus 46 s~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~------Dg~I~vWDl~t~~~~~ 119 (1155)
+.+.+.++..++.. ..+.....|+.+.... ..|...|.+|+|+|||.+|++++. |++|++|+..++....
T Consensus 9 sg~d~g~~~~~~~~-~g~~~~~~w~~p~~~p---~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 9 SGVDLGTENLYFQS-NGSSKGSAWGRPVTAP---ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred cCCCCCccceEEec-CCCccccccCCCCCCc---ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 34566666655444 4567788898764322 246788999999999999999997 7789999988775433
Q ss_pred e-----ecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccc
Q 001109 120 T-----LPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKA 194 (1155)
Q Consensus 120 ~-----l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~ 194 (1155)
. ...+..|++++|+|++.++ +++.||+|+||++...+.... ..+.
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~-~~~~---------------------------- 134 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLV-NKFA---------------------------- 134 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CC-CCEE----------------------------
T ss_pred eEecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEE-Eeec----------------------------
Confidence 2 2345789999999998655 577899999997655321110 0000
Q ss_pred ccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccc
Q 001109 195 AFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQ 274 (1155)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~ 274 (1155)
...+...|.+ ++|+|++ ++|++|+.||.|++||+.+++++....
T Consensus 135 ------------------~~~h~~~V~~-----v~~spdg--------~~l~sgs~dg~v~iwd~~~~~~~~~~~----- 178 (357)
T 4g56_B 135 ------------------KYEHDDIVKT-----LSVFSDG--------TQAVSGGKDFSVKVWDLSQKAVLKSYN----- 178 (357)
T ss_dssp ------------------ECCCSSCEEE-----EEECSSS--------SEEEEEETTSCEEEEETTTTEEEEEEC-----
T ss_pred ------------------cCCCCCCEEE-----EEECCCC--------CEEEEEeCCCeEEEEECCCCcEEEEEc-----
Confidence 0002334444 9999974 679999999999999999998876521
Q ss_pred cccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCC-eEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccc
Q 001109 275 LKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGS-VLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKL 353 (1155)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~-~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl 353 (1155)
.|...|++++|+ +++. .+++++.||.|++||+.++.....
T Consensus 179 -------------------------~h~~~v~~v~~s-~~~~~~~~s~~~dg~v~~wd~~~~~~~~~------------- 219 (357)
T 4g56_B 179 -------------------------AHSSEVNCVAAC-PGKDTIFLSCGEDGRILLWDTRKPKPATR------------- 219 (357)
T ss_dssp -------------------------CCSSCEEEEEEC-TTCSSCEEEEETTSCEEECCTTSSSCBCB-------------
T ss_pred -------------------------CCCCCEEEEEEc-cCCCceeeeeccCCceEEEECCCCceeee-------------
Confidence 157889999998 8874 799999999999999875421100
Q ss_pred cccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCC
Q 001109 354 QLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNG 433 (1155)
Q Consensus 354 ~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~ 433 (1155)
T Consensus 220 -------------------------------------------------------------------------------- 219 (357)
T 4g56_B 220 -------------------------------------------------------------------------------- 219 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhh
Q 001109 434 MNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAA 513 (1155)
Q Consensus 434 ~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~ 513 (1155)
+. ...|...+++++|
T Consensus 220 -----------------~~----------------------------~~~~~~~v~~v~~-------------------- 234 (357)
T 4g56_B 220 -----------------ID----------------------------FCASDTIPTSVTW-------------------- 234 (357)
T ss_dssp -----------------CC----------------------------CTTCCSCEEEEEE--------------------
T ss_pred -----------------ee----------------------------eccccccccchhh--------------------
Confidence 00 0001112333333
Q ss_pred ccccCCCCCccccCCCccCcccCCCCCcccccccCCc-CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCC
Q 001109 514 KVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLV-ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATES 592 (1155)
Q Consensus 514 ~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~-~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~ 592 (1155)
+|+ +.+|++|+.|++|++||+..+.. +..+. +|.
T Consensus 235 ----------------------------------sp~~~~~la~g~~d~~i~~wd~~~~~~--~~~~~---------~~~ 269 (357)
T 4g56_B 235 ----------------------------------HPEKDDTFACGDETGNVSLVNIKNPDS--AQTSA---------VHS 269 (357)
T ss_dssp ----------------------------------CTTSTTEEEEEESSSCEEEEESSCGGG--CEEEC---------CCS
T ss_pred ----------------------------------hhcccceEEEeecccceeEEECCCCcE--eEEEe---------ccc
Confidence 333 34799999999999999988763 23332 678
Q ss_pred CCeEEEEEecCC-CeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcC-C
Q 001109 593 ESVSALEFCSVT-LNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSN-F 670 (1155)
Q Consensus 593 ~~V~~lafspdg-~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp-d 670 (1155)
.+|++|+|+|++ ++||+|+.||+|+|||+..++. ....+|.+.|++|+||| |
T Consensus 270 ~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~--------------------------~~~~~H~~~V~~vafsP~d 323 (357)
T 4g56_B 270 QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV--------------------------FRDLSHRDFVTGVAWSPLD 323 (357)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE--------------------------EEECCCSSCEEEEEECSSS
T ss_pred eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE--------------------------eEECCCCCCEEEEEEeCCC
Confidence 899999999997 5799999999999999876421 12347999999999999 8
Q ss_pred CCEEEEEeCCCcEEEEecCCc
Q 001109 671 GARLAVGFECSQVAMLDISTF 691 (1155)
Q Consensus 671 g~~LAsGs~Dg~V~lWDi~~~ 691 (1155)
+++||+|+.||+|++||+...
T Consensus 324 ~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 324 HSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TTEEEEEETTSCEEEEECC--
T ss_pred CCEEEEEcCCCeEEEEECCCC
Confidence 999999999999999999764
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-31 Score=312.93 Aligned_cols=172 Identities=17% Similarity=0.169 Sum_probs=130.8
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccc
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEET 629 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~ 629 (1155)
++++|++|+.||+|++||+..+.+. ..+.... ....+|...|++++|+|++++|++|+.||+|++||+........
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~~~~~--~~~~~~~--~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSETGFLV--ERLDSEN--ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEE--EEEC--------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEE--Eeecccc--cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 5668999999999999999887632 2232110 01237889999999999999999999999999999976432100
Q ss_pred eeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeE
Q 001109 630 LNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLY 709 (1155)
Q Consensus 630 ~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~s 709 (1155)
........+...+.+|...|++++|+|++++||+|+.||+|++||+.++..+... .+|..+|.+
T Consensus 294 -------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l---~~h~~~v~~ 357 (393)
T 1erj_A 294 -------------SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML---QGHRNSVIS 357 (393)
T ss_dssp --------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEE
T ss_pred -------------ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE---CCCCCCEEE
Confidence 0001112345677899999999999999999999999999999999999887654 469999999
Q ss_pred EEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 710 LAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 710 lafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
++|++... ..|++++|++|+.|++|+|||..+
T Consensus 358 v~~~~~~~----------------~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 358 VAVANGSS----------------LGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEECSSCT----------------TCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEecCCcC----------------cCCCCCEEEEECCCCcEEECcccc
Confidence 99984321 247899999999999999999753
No 34
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.3e-31 Score=303.69 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=121.6
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccc
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEET 629 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~ 629 (1155)
++.++++|+.|++|++||+..... ...+ .+|..+|++++|+|++++||+|+.||+|++||+.....
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~--~~~~---------~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~--- 230 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQI--EADF---------IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA--- 230 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEE--EEEE---------CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE---
T ss_pred CccEEEEEeCCCEEEEEECCcchh--heee---------cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---
Confidence 345799999999999999987653 2222 27889999999999999999999999999999987432
Q ss_pred eeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEecc-----CCCCC
Q 001109 630 LNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDS-----LSNSN 704 (1155)
Q Consensus 630 ~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~-----~~~h~ 704 (1155)
...+. +...|.+++|+|+|.+||+++.++ |++|++..+..+..... ...|.
T Consensus 231 ----------------------~~~~~-~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (319)
T 3frx_A 231 ----------------------MYTLS-AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAE 286 (319)
T ss_dssp ----------------------EEEEE-CCSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred ----------------------EEEec-CCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcC
Confidence 12333 456899999999999999998765 99999998776654321 12356
Q ss_pred CCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCc
Q 001109 705 SPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGH 759 (1155)
Q Consensus 705 ~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~ 759 (1155)
..|.+++|+ |||++|++|+.|++|+|||+.|++
T Consensus 287 ~~v~~~~~s----------------------pdg~~l~sg~~Dg~i~vWd~~t~~ 319 (319)
T 3frx_A 287 PHAVSLAWS----------------------ADGQTLFAGYTDNVIRVWQVMTAN 319 (319)
T ss_dssp CCEEEEEEC----------------------TTSSEEEEEETTSCEEEEEEEEC-
T ss_pred cceeEEEEC----------------------CCCCEEEEeecCceEEEEEEeecC
Confidence 789999999 999999999999999999988763
No 35
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-31 Score=305.34 Aligned_cols=163 Identities=15% Similarity=0.123 Sum_probs=122.2
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecC--CCeEEEEeCCCeEEEEEecc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSV--TLNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspd--g~~Lasgs~dG~V~lwd~~~ 623 (1155)
.|+|++++|+||+.|++||+||...+...++..+. +|..+|++++|+|+ +.+|++|+.||+|++|++..
T Consensus 160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN---------GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC---------CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc---------CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 44567779999999999999998766433444443 78899999999999 77899999999999999976
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEeec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCcc--EEEEeccC
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFSV-LNSPICNLKFSNFGARLAVGFECSQVAMLDISTFS--VLFITDSL 700 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~-h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~--~l~~~~~~ 700 (1155)
....... ...+...+.+ |...|++|+|++++ +||+|+.||+|+|||..++. .+.. ..
T Consensus 231 ~~~~~~~-----------------~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~--~~ 290 (330)
T 2hes_X 231 DDEDDQQ-----------------EWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAK--RA 290 (330)
T ss_dssp ECTTSCE-----------------EEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEE--ES
T ss_pred CCccccc-----------------eeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEec--cc
Confidence 4211000 0012234444 89999999999776 89999999999999998764 2222 23
Q ss_pred CCCCC-CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 701 SNSNS-PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 701 ~~h~~-~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
.+|.. .|.+++|++. .|+++|++|+.|++|+|||+++
T Consensus 291 ~~h~~~~v~~v~~~~~--------------------~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 291 LCHGVYEINVVKWLEL--------------------NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CTTTTSCEEEEEEC-------------------------CCEEEEETTSEEEEEEC--
T ss_pred cccccceEEEEEEecC--------------------CCceEEEEecCCCcEEEEEecc
Confidence 46887 8999999821 1688999999999999999875
No 36
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.2e-31 Score=304.25 Aligned_cols=281 Identities=15% Similarity=0.170 Sum_probs=209.9
Q ss_pred eeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCC
Q 001109 225 VEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKE 304 (1155)
Q Consensus 225 v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1155)
|.++.|+|++ ++|++|+.||.|++||+.+++.+.... .|...
T Consensus 58 v~~~~~s~d~--------~~l~s~s~Dg~v~iWd~~~~~~~~~~~------------------------------~~~~~ 99 (340)
T 1got_B 58 IYAMHWGTDS--------RLLLSASQDGKLIIWDSYTTNKVHAIP------------------------------LRSSW 99 (340)
T ss_dssp EEEEEECTTS--------SEEEEEETTTEEEEEETTTCCEEEEEE------------------------------CSSSC
T ss_pred eEEEEECCCC--------CEEEEEeCCCcEEEEECCCCCcceEee------------------------------cCCcc
Confidence 4449999974 679999999999999999888765421 14678
Q ss_pred ccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEE
Q 001109 305 ISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFV 384 (1155)
Q Consensus 305 V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv 384 (1155)
|.+++|+ |+|++||+|+.||.|++|++.+...... +.....+|..+|..+
T Consensus 100 v~~~~~s-~~~~~l~s~~~d~~v~iw~~~~~~~~~~------------~~~~~~~h~~~v~~~----------------- 149 (340)
T 1got_B 100 VMTCAYA-PSGNYVACGGLDNICSIYNLKTREGNVR------------VSRELAGHTGYLSCC----------------- 149 (340)
T ss_dssp EEEEEEC-TTSSEEEEEETTCEEEEEETTTCSBSCE------------EEEEEECCSSCEEEE-----------------
T ss_pred EEEEEEC-CCCCEEEEEeCCCeEEEEECccCCCcce------------eEEEecCCCccEEEE-----------------
Confidence 9999999 9999999999999999999876421100 000000122222222
Q ss_pred ecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCccc
Q 001109 385 FGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKS 464 (1155)
Q Consensus 385 ~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~ 464 (1155)
.+.+++ .+++.+.+|.+++||...
T Consensus 150 -------------------------------------------~~~~~~-------~l~s~s~d~~i~~wd~~~------ 173 (340)
T 1got_B 150 -------------------------------------------RFLDDN-------QIVTSSGDTTCALWDIET------ 173 (340)
T ss_dssp -------------------------------------------EEEETT-------EEEEEETTSCEEEEETTT------
T ss_pred -------------------------------------------EECCCC-------cEEEEECCCcEEEEECCC------
Confidence 222211 356667788999999642
Q ss_pred ccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccc
Q 001109 465 QEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHD 544 (1155)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l 544 (1155)
......+.+|...|+++
T Consensus 174 ----------~~~~~~~~~h~~~v~~~----------------------------------------------------- 190 (340)
T 1got_B 174 ----------GQQTTTFTGHTGDVMSL----------------------------------------------------- 190 (340)
T ss_dssp ----------TEEEEEECCCSSCEEEE-----------------------------------------------------
T ss_pred ----------CcEEEEEcCCCCceEEE-----------------------------------------------------
Confidence 11112223344333332
Q ss_pred cccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccC
Q 001109 545 AEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 545 ~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~ 624 (1155)
+++|+++++++|+.||+|++||+..+.. +..+. +|..+|++++|+|++.+||+|+.||+|++||+...
T Consensus 191 -~~~~~~~~l~sg~~d~~v~~wd~~~~~~--~~~~~---------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 191 -SLAPDTRLFVSGACDASAKLWDVREGMC--RQTFT---------GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp -EECTTSSEEEEEETTSCEEEEETTTCSE--EEEEC---------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -EECCCCCEEEEEeCCCcEEEEECCCCee--EEEEc---------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 5667788999999999999999988763 23332 78889999999999999999999999999999864
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEe--ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALF--SVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l--~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
... ..+ ..+...|++++|+|+|++||+|+.||.|+|||+.++..+... .+
T Consensus 259 ~~~-------------------------~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~---~~ 310 (340)
T 1got_B 259 QEL-------------------------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL---AG 310 (340)
T ss_dssp EEE-------------------------EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---EC
T ss_pred cEE-------------------------EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe---ec
Confidence 321 111 234458999999999999999999999999999998877654 46
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEE
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCD 754 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd 754 (1155)
|..+|.+|+|+ |||++|++|+.|++|+|||
T Consensus 311 h~~~v~~~~~s----------------------~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 311 HDNRVSCLGVT----------------------DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEEC----------------------TTSSCEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEc----------------------CCCCEEEEEcCCccEEecC
Confidence 99999999999 8999999999999999997
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-33 Score=325.94 Aligned_cols=340 Identities=14% Similarity=0.159 Sum_probs=250.8
Q ss_pred CEEEEEEEcCCc-EEEEE----------ecCCeEEEEECCCCc---eeeeecCCCceeEEEEecCCCEEEEEeCCCcEEE
Q 001109 85 AFKHLEFLQNQG-FLVSI----------SSGNEIQLWDLEARR---ITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYV 150 (1155)
Q Consensus 85 ~V~~l~Fs~dg~-~LvS~----------s~Dg~I~vWDl~t~~---~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~v 150 (1155)
.|.+++|+|++. +|+++ +.|++|+|||+.++. .+..+.....|++++|+|++++|++|+.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 577899999987 88888 889999999999885 4555556689999999999999999999999999
Q ss_pred EEecCCCc--eeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEE
Q 001109 151 LKYDTEEG--KLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIR 228 (1155)
Q Consensus 151 w~~d~~~~--~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v 228 (1155)
|+++.... +.. ..+. + +...|.+ +
T Consensus 94 w~~~~~~~~~~~~---~~~~-----------------------~-----------------------h~~~v~~-----~ 119 (416)
T 2pm9_A 94 YSTNEANNAINSM---ARFS-----------------------N-----------------------HSSSVKT-----V 119 (416)
T ss_dssp ECCSSTTSCCCEE---EECC-----------------------C-----------------------SSSCCCE-----E
T ss_pred eecccccccccch---hhcc-----------------------C-----------------------CccceEE-----E
Confidence 97765211 010 0000 0 2344555 9
Q ss_pred EEeecccccccccccEEEEEEcCCeEEEEEccCCe------EEEEecccccccccccccCCCCCCCCCCccccccccccc
Q 001109 229 LLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDK------VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVE 302 (1155)
Q Consensus 229 ~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1155)
+|+|++. ++|++++.||.|++||+.+++ .... +. ....|.
T Consensus 120 ~~~~~~~-------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~--------------------~~~~~~ 165 (416)
T 2pm9_A 120 KFNAKQD-------NVLASGGNNGEIFIWDMNKCTESPSNYTPLT-------PG--------------------QSMSSV 165 (416)
T ss_dssp EECSSST-------TBEEEECSSSCEEBCBTTTTSSCTTTCCCBC-------CC--------------------CSCCSS
T ss_pred EEcCCCC-------CEEEEEcCCCeEEEEECCCCccccccccccc-------cc--------------------cccCCC
Confidence 9999732 579999999999999998775 2111 00 001257
Q ss_pred CCccEEEEEecC-CCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCce
Q 001109 303 KEISSLCWASND-GSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQ 381 (1155)
Q Consensus 303 ~~V~sl~~s~pd-G~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~ 381 (1155)
..|++++|+ |+ +.+|++|+.||.|++||+.+... +..+.
T Consensus 166 ~~v~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~--------------------------~~~~~------------- 205 (416)
T 2pm9_A 166 DEVISLAWN-QSLAHVFASAGSSNFASIWDLKAKKE--------------------------VIHLS------------- 205 (416)
T ss_dssp CCCCEEEEC-SSCTTEEEEESSSSCEEEEETTTTEE--------------------------EEEEC-------------
T ss_pred CCeeEEEeC-CCCCcEEEEEcCCCCEEEEECCCCCc--------------------------ceEEe-------------
Confidence 789999999 88 78999999999999999865311 00000
Q ss_pred EEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCC
Q 001109 382 LFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSP 461 (1155)
Q Consensus 382 llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~ 461 (1155)
. .+
T Consensus 206 ---------------------~--------------------------------------------~~------------ 208 (416)
T 2pm9_A 206 ---------------------Y--------------------------------------------TS------------ 208 (416)
T ss_dssp ---------------------C--------------------------------------------CC------------
T ss_pred ---------------------c--------------------------------------------cc------------
Confidence 0 00
Q ss_pred cccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCc
Q 001109 462 KKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQ 541 (1155)
Q Consensus 462 ~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~ 541 (1155)
....|...|++++
T Consensus 209 ------------------~~~~~~~~v~~~~------------------------------------------------- 221 (416)
T 2pm9_A 209 ------------------PNSGIKQQLSVVE------------------------------------------------- 221 (416)
T ss_dssp ------------------CSSCCCCCEEEEE-------------------------------------------------
T ss_pred ------------------cccccCCceEEEE-------------------------------------------------
Confidence 0001233344443
Q ss_pred ccccccCCcC-cEEEEEECCC---cEEEEeCCCCCeeeeeeeCCCcCccccC-CCCCCeEEEEEec-CCCeEEEEeCCCe
Q 001109 542 LHDAEDYLVE-RLYIAGYRDG---STRIWDATYPTLSLIHVFGSELPGIRTA-TESESVSALEFCS-VTLNLAIGSSSGL 615 (1155)
Q Consensus 542 ~~l~~~s~~~-~lLaTgs~Dg---tVrlWD~~~~~l~~l~~l~~~~~~i~~~-gh~~~V~~lafsp-dg~~Lasgs~dG~ 615 (1155)
++|++ .++++|+.|+ +|++||+..+.. ++.. +. +|..+|++++|+| ++.+|++|+.||.
T Consensus 222 -----~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~---------~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~ 286 (416)
T 2pm9_A 222 -----WHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQT---------LNQGHQKGILSLDWCHQDEHLLLSSGRDNT 286 (416)
T ss_dssp -----ECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBC---------CCSCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred -----ECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEE---------eecCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence 34443 4899999999 999999987531 1111 22 6788999999999 9999999999999
Q ss_pred EEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEecCCccEE
Q 001109 616 VWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG-ARLAVGFECSQVAMLDISTFSVL 694 (1155)
Q Consensus 616 V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg-~~LAsGs~Dg~V~lWDi~~~~~l 694 (1155)
|++||+.... ++..+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+....
T Consensus 287 v~~wd~~~~~-------------------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 287 VLLWNPESAE-------------------------QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEECSSSCC-------------------------EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred EEEeeCCCCc-------------------------cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 9999988743 235667899999999999999 89999999999999999876532
Q ss_pred EEe--------------------------------ccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEE
Q 001109 695 FIT--------------------------------DSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLF 742 (1155)
Q Consensus 695 ~~~--------------------------------~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~ 742 (1155)
... .....|..+|.+++|+ |||++|+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----------------------~dg~~la 399 (416)
T 2pm9_A 342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWA----------------------FGGKLVQ 399 (416)
T ss_dssp SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEE----------------------TTTEEEC
T ss_pred cccccccccccCCcccccccccccccccccccccccCCccccCCccceEEe----------------------eCCeEEE
Confidence 110 0001156777788888 9999999
Q ss_pred EEeCCceEEEEECCCC
Q 001109 743 FMTKDAHIVVCDSTTG 758 (1155)
Q Consensus 743 s~s~Dg~I~vwd~~tG 758 (1155)
+++.|++|+|||++|.
T Consensus 400 ~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 400 ITPDGKGVSITNPKIS 415 (416)
T ss_dssp BCTTSSCBCCBCCCCC
T ss_pred EeCCCCeEEEEEeccC
Confidence 9999999999999875
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.2e-31 Score=301.10 Aligned_cols=326 Identities=15% Similarity=0.106 Sum_probs=246.7
Q ss_pred CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC-ceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceee
Q 001109 83 QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR-RITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLI 161 (1155)
Q Consensus 83 ~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~-~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~ 161 (1155)
..+|.+++|+|||++|+++..++.+.+|+.... ..+..+...+.|++++|+|++++|++++ +|.|++|+++.......
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence 457889999999999988887777777765544 3444455558999999999999999999 99999998765431100
Q ss_pred ccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccccc
Q 001109 162 HSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLG 241 (1155)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~ 241 (1155)
+. . +.. ..+...+. +++|+|++
T Consensus 88 ---~~----~-------------------------------~~~--------~~~~~~v~-----~~~~~~~~------- 109 (337)
T 1gxr_A 88 ---VS----Q-------------------------------LDC--------LNRDNYIR-----SCKLLPDG------- 109 (337)
T ss_dssp ---SE----E-------------------------------EEC--------SCTTSBEE-----EEEECTTS-------
T ss_pred ---ee----c-------------------------------ccc--------cCCCCcEE-----EEEEcCCC-------
Confidence 00 0 000 00123344 49999974
Q ss_pred ccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEE
Q 001109 242 FSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVG 321 (1155)
Q Consensus 242 ~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg 321 (1155)
++|++++.||.|++||+.+++...... +. .|...|++++|+ |++++|++|
T Consensus 110 -~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~-----------------------~~~~~i~~~~~~-~~~~~l~~~ 159 (337)
T 1gxr_A 110 -CTLIVGGEASTLSIWDLAAPTPRIKAE-----LT-----------------------SSAPACYALAIS-PDSKVCFSC 159 (337)
T ss_dssp -SEEEEEESSSEEEEEECCCC--EEEEE-----EE-----------------------CSSSCEEEEEEC-TTSSEEEEE
T ss_pred -CEEEEEcCCCcEEEEECCCCCcceeee-----cc-----------------------cCCCceEEEEEC-CCCCEEEEE
Confidence 579999999999999999877332211 11 146779999999 999999999
Q ss_pred EcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEc
Q 001109 322 YVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYL 401 (1155)
Q Consensus 322 ~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l 401 (1155)
+.||.|++||+.++.. +.
T Consensus 160 ~~dg~v~~~d~~~~~~----------------------------------------------------------~~---- 177 (337)
T 1gxr_A 160 CSDGNIAVWDLHNQTL----------------------------------------------------------VR---- 177 (337)
T ss_dssp ETTSCEEEEETTTTEE----------------------------------------------------------EE----
T ss_pred eCCCcEEEEeCCCCce----------------------------------------------------------ee----
Confidence 9999999999864310 00
Q ss_pred cCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCccc
Q 001109 402 NWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLI 481 (1155)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~ 481 (1155)
.+
T Consensus 178 ---------------------------------------------------~~--------------------------- 179 (337)
T 1gxr_A 178 ---------------------------------------------------QF--------------------------- 179 (337)
T ss_dssp ---------------------------------------------------EE---------------------------
T ss_pred ---------------------------------------------------ee---------------------------
Confidence 00
Q ss_pred ccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCC
Q 001109 482 PTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDG 561 (1155)
Q Consensus 482 ~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~Dg 561 (1155)
..|...|+++ +++|++++|++++.||
T Consensus 180 ~~~~~~i~~~------------------------------------------------------~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 180 QGHTDGASCI------------------------------------------------------DISNDGTKLWTGGLDN 205 (337)
T ss_dssp CCCSSCEEEE------------------------------------------------------EECTTSSEEEEEETTS
T ss_pred ecccCceEEE------------------------------------------------------EECCCCCEEEEEecCC
Confidence 0022222222 3446677899999999
Q ss_pred cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEE
Q 001109 562 STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVH 641 (1155)
Q Consensus 562 tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~ 641 (1155)
.|++||+..+... ..+ .+..+|.+++|+|++++|++++.+|.|++|++.....
T Consensus 206 ~i~~~d~~~~~~~--~~~----------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--------------- 258 (337)
T 1gxr_A 206 TVRSWDLREGRQL--QQH----------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--------------- 258 (337)
T ss_dssp EEEEEETTTTEEE--EEE----------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE---------------
T ss_pred cEEEEECCCCceE--eee----------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe---------------
Confidence 9999999887632 222 2445899999999999999999999999999987431
Q ss_pred EecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCcc
Q 001109 642 ILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNL 721 (1155)
Q Consensus 642 ~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~ 721 (1155)
..+..|...|++++|+|+|++|++|+.||.|++||+.++..+... .|..+|.+++|+
T Consensus 259 -----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~----~~~~~v~~~~~s-------- 315 (337)
T 1gxr_A 259 -----------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDIS-------- 315 (337)
T ss_dssp -----------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----ECSSCEEEEEEC--------
T ss_pred -----------EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe----cCCCcEEEEEEC--------
Confidence 245679999999999999999999999999999999998887543 388999999999
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 722 TISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 722 ~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
||+++|++++.||+|++||+
T Consensus 316 --------------~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 316 --------------VDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp --------------TTSCEEEEEETTSCEEEEEE
T ss_pred --------------CCCCEEEEecCCCeEEEEEE
Confidence 88999999999999999995
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.7e-31 Score=302.29 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=118.6
Q ss_pred cCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcc
Q 001109 547 DYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSN 626 (1155)
Q Consensus 547 ~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~ 626 (1155)
+.|.+.++++|+.||+|++||... . ....+. +|..+|++++|+|+|++||+|+.||.|++||+.....
T Consensus 180 ~~~~~~~l~s~~~d~~i~iwd~~~-~--~~~~~~---------~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 180 VQPFAPYFASVGWDGRLKVWNTNF-Q--IRYTFK---------AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp CCSSCCEEEEEETTSEEEEEETTT-E--EEEEEE---------CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred cCCCCCEEEEEcCCCEEEEEcCCC-c--eeEEEc---------CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 345567899999999999999532 2 223332 7888999999999999999999999999999854221
Q ss_pred ccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEE--Eec------
Q 001109 627 EETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLF--ITD------ 698 (1155)
Q Consensus 627 ~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~--~~~------ 698 (1155)
. ...+ .+...|++|+|+|++++||+|+ |+.|+|||+.++.... ...
T Consensus 248 ~------------------------~~~~-~~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 248 P------------------------QREF-DAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp C------------------------SEEE-ECSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred c------------------------ceee-cCCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchh
Confidence 1 0112 3456799999999999888665 7779999998765432 211
Q ss_pred --cCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCc
Q 001109 699 --SLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGH 759 (1155)
Q Consensus 699 --~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~ 759 (1155)
...+|...|.+++|+ |+|++|++|+.||+|++||.++|.
T Consensus 302 ~~~~~~~~~~v~~~~~s----------------------p~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWN----------------------ALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp BTTBCCSCCCEEEEEEC----------------------SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred hhhhcCCCCceEEEEEC----------------------CCCCeEEEecCCceEEEEEEEccC
Confidence 012688999999999 899999999999999999987753
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.5e-31 Score=310.45 Aligned_cols=208 Identities=18% Similarity=0.231 Sum_probs=163.3
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCC-------------------CCCEEEEEEEcCCcEEE
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPK-------------------QLAFKHLEFLQNQGFLV 99 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~-------------------~~~V~~l~Fs~dg~~Lv 99 (1155)
.+|.+.|++++|+|+|++||+|+ |++|+||+....+.+..... ...|.+++|+|++.+|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 47999999999999999999987 68999999877665543321 12499999999999999
Q ss_pred EEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeecee
Q 001109 100 SISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHL 178 (1155)
Q Consensus 100 S~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 178 (1155)
+++.|++|+|||+++++.+..+..| ..|++++|+|++++|++|+.||+|++|++.. ++.. ..+
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~--~~~~---~~~----------- 203 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT--GQCS---LTL----------- 203 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEE---EEE-----------
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC--CeeE---EEE-----------
Confidence 9999999999999999999999877 7899999999999999999999999996544 2221 000
Q ss_pred EeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEE
Q 001109 179 LLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWD 258 (1155)
Q Consensus 179 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd 258 (1155)
.....+.. ++++|.+ + ++|++|+.||.|++||
T Consensus 204 ------------------------------------~~~~~v~~-----~~~~~~~-~------~~l~~~s~d~~v~iwd 235 (393)
T 1erj_A 204 ------------------------------------SIEDGVTT-----VAVSPGD-G------KYIAAGSLDRAVRVWD 235 (393)
T ss_dssp ------------------------------------ECSSCEEE-----EEECSTT-C------CEEEEEETTSCEEEEE
T ss_pred ------------------------------------EcCCCcEE-----EEEECCC-C------CEEEEEcCCCcEEEEE
Confidence 01222333 8999943 3 6899999999999999
Q ss_pred ccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 259 VSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
+.+++++..... . .... ..|...|++++|+ |+|++|++|+.||.|++||+.+.
T Consensus 236 ~~~~~~~~~~~~-----~------~~~~------------~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 236 SETGFLVERLDS-----E------NESG------------TGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp TTTCCEEEEEC-----------------------------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC---
T ss_pred CCCCcEEEeecc-----c------ccCC------------CCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEECCCC
Confidence 999887754211 0 0000 1257889999999 99999999999999999998753
No 41
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-31 Score=312.34 Aligned_cols=307 Identities=12% Similarity=0.152 Sum_probs=212.0
Q ss_pred eeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCC
Q 001109 225 VEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKE 304 (1155)
Q Consensus 225 v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1155)
|.+++|+|++ ++|++|+.||+|+|||+.+++.+.... .|...
T Consensus 69 V~~~~~sp~~--------~~l~s~s~D~~v~iWd~~~~~~~~~~~------------------------------~h~~~ 110 (380)
T 3iz6_a 69 VYSLDWTPEK--------NWIVSASQDGRLIVWNALTSQKTHAIK------------------------------LHCPW 110 (380)
T ss_dssp EEEEEECTTS--------SCEEEEETTSEEEEEETTTTEEEEEEE------------------------------CCCTT
T ss_pred EEEEEEcCCC--------CEEEEEeCCCeEEEEECCCCccceEEe------------------------------cCCCC
Confidence 4449999974 579999999999999999988766421 14678
Q ss_pred ccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEE
Q 001109 305 ISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFV 384 (1155)
Q Consensus 305 V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv 384 (1155)
|.+++|+ |+|++||+|+.|+.|++||+.+...... ..++.+. ..+|...|..+.|
T Consensus 111 v~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~~~------~~~~~~~---~~gh~~~v~~~~~--------------- 165 (380)
T 3iz6_a 111 VMECAFA-PNGQSVACGGLDSACSIFNLSSQADRDG------NMPVSRV---LTGHKGYASSCQY--------------- 165 (380)
T ss_dssp CCCCEEC-TTSSEEEECCSSSCCEEEECCCCSSCCC------SSTTCCB---CCCCSSCCCCCBC---------------
T ss_pred EEEEEEC-CCCCEEEEeeCCCcEEEEECCCCccccC------Cccceee---ccCCCcceEEEEE---------------
Confidence 9999999 9999999999999999999976432110 0000000 0112222222222
Q ss_pred ecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCccc
Q 001109 385 FGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKS 464 (1155)
Q Consensus 385 ~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~ 464 (1155)
.|+ ....+++++.+|.+++||.........
T Consensus 166 ---------------------------------------------~~~-----~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 166 ---------------------------------------------VPD-----QETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp ---------------------------------------------CSS-----SSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred ---------------------------------------------ecC-----CCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 111 122466677788899998652111000
Q ss_pred ccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccc
Q 001109 465 QEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHD 544 (1155)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l 544 (1155)
. ......+|...|.++
T Consensus 196 ~-----------~~~~~~~h~~~v~~~----------------------------------------------------- 211 (380)
T 3iz6_a 196 F-----------GSEFPSGHTADVLSL----------------------------------------------------- 211 (380)
T ss_dssp E-----------CCCSSSSCCSCEEEE-----------------------------------------------------
T ss_pred e-----------ecccCCCCccCeEEE-----------------------------------------------------
Confidence 0 000001233333222
Q ss_pred cccC-CcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEecc
Q 001109 545 AEDY-LVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 545 ~~~s-~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~ 623 (1155)
.++ +++++|+||+.||+|++||+.... ..+..+ .+|..+|++|+|+|++.+|++|+.||+|++||+..
T Consensus 212 -~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~---------~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 212 -SINSLNANMFISGSCDTTVRLWDLRITS-RAVRTY---------HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp -EECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEE---------CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred -EeecCCCCEEEEEECCCeEEEEECCCCC-cceEEE---------CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence 232 367799999999999999987432 112222 27889999999999999999999999999999987
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEecc-CCC
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDS-LSN 702 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~-~~~ 702 (1155)
+... ..+.... .....+...|++++|+|+|++||+|+.||.|+|||+..+..+..... ..+
T Consensus 281 ~~~~-------------~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 342 (380)
T 3iz6_a 281 GHQL-------------QVYNREP-----DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS 342 (380)
T ss_dssp TEEE-------------EEECCCC-----SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSS
T ss_pred CcEE-------------EEecccc-----cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCC
Confidence 5321 1110000 00012344699999999999999999999999999998887765532 257
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCc
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGH 759 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~ 759 (1155)
|..+|.+|+|+ |||++|++|+.|++|+|||...++
T Consensus 343 h~~~v~~l~~s----------------------~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 343 HEGRISCLGLS----------------------SDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCCCCEEEEC----------------------SSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCceEEEEEC----------------------CCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999 899999999999999999998754
No 42
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.1e-30 Score=295.80 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=163.9
Q ss_pred cCCCCCceEEEEcCCC-CEEEEEEcCCeEEEEccCCc-----eEEE-EcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEE
Q 001109 39 YGIPSTASILAFDHVQ-SLLAIGTQDGRIKVIGGDNI-----EGLL-VSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g-~lLAsgs~DG~I~vw~~~~~-----~~~~-~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWD 111 (1155)
.||.+.|++|+|+|++ ++||+|+.||+|++|+..+. ..+. ...|...|.+++|+|++.+|++++.|++|+|||
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 6999999999999976 89999999999999986531 1222 235788999999999999999999999999999
Q ss_pred CCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccc
Q 001109 112 LEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQRE 190 (1155)
Q Consensus 112 l~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~ 190 (1155)
+.+++++..+..| +.|++++|+|++.++++|+.||+|++|++... .+. .+.
T Consensus 94 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~----~~~---------------------- 145 (319)
T 3frx_A 94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLA----TLL---------------------- 145 (319)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEE----EEC----------------------
T ss_pred CCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEE----EEe----------------------
Confidence 9999999999877 78999999999999999999999999976431 111 000
Q ss_pred ccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecc
Q 001109 191 KGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGS 270 (1155)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~ 270 (1155)
+ +...+. ++.+.|.... ......+++++.||.|++||+.+.+......
T Consensus 146 -~-----------------------h~~~v~-----~~~~~~~~~~--~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~- 193 (319)
T 3frx_A 146 -G-----------------------HNDWVS-----QVRVVPNEKA--DDDSVTIISAGNDKMVKAWNLNQFQIEADFI- 193 (319)
T ss_dssp -C-----------------------CSSCEE-----EEEECCC--------CCEEEEEETTSCEEEEETTTTEEEEEEC-
T ss_pred -c-----------------------cCCcEE-----EEEEccCCCC--CCCccEEEEEeCCCEEEEEECCcchhheeec-
Confidence 0 122233 3778775310 0001479999999999999999888765421
Q ss_pred cccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 271 KDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
.|...|++++|+ |+|++||+|+.||.|++||+.+
T Consensus 194 -----------------------------~h~~~v~~~~~s-p~g~~l~s~~~dg~i~iwd~~~ 227 (319)
T 3frx_A 194 -----------------------------GHNSNINTLTAS-PDGTLIASAGKDGEIMLWNLAA 227 (319)
T ss_dssp -----------------------------CCCSCEEEEEEC-TTSSEEEEEETTCEEEEEETTT
T ss_pred -----------------------------CCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCC
Confidence 157889999999 9999999999999999999864
No 43
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.8e-30 Score=298.33 Aligned_cols=286 Identities=15% Similarity=0.146 Sum_probs=211.9
Q ss_pred eeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCC
Q 001109 225 VEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKE 304 (1155)
Q Consensus 225 v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1155)
|.+++|+|+. ++|++|+.||.|++||..+++....... +...
T Consensus 67 V~~~~~s~d~--------~~l~s~s~Dg~v~vWd~~~~~~~~~~~~------------------------------~~~~ 108 (354)
T 2pbi_B 67 VLCMDWCKDK--------RRIVSSSQDGKVIVWDSFTTNKEHAVTM------------------------------PCTW 108 (354)
T ss_dssp EEEEEECTTS--------SEEEEEETTSEEEEEETTTCCEEEEEEC------------------------------SSSC
T ss_pred EEEEEECCCC--------CEEEEEeCCCeEEEEECCCCCcceEEec------------------------------CCCC
Confidence 4449999974 6799999999999999988877654211 3567
Q ss_pred ccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEE
Q 001109 305 ISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFV 384 (1155)
Q Consensus 305 V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv 384 (1155)
|.+++|+ |+|..||+|+.|+.+++|++........ ...... ...|..+|..+
T Consensus 109 v~~~~~s-p~g~~lasg~~d~~i~v~~~~~~~~~~~------~~~~~~----~~~h~~~v~~~----------------- 160 (354)
T 2pbi_B 109 VMACAYA-PSGCAIACGGLDNKCSVYPLTFDKNENM------AAKKKS----VAMHTNYLSAC----------------- 160 (354)
T ss_dssp CCEEEEC-TTSSEEEEESTTSEEEEEECCCCTTCCS------GGGCEE----EEECSSCEEEE-----------------
T ss_pred EEEEEEC-CCCCEEEEeeCCCCEEEEEEeccccccc------ccccee----eeccCCcEEEE-----------------
Confidence 9999999 9999999999999999999865421110 000000 00122222222
Q ss_pred ecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCccc
Q 001109 385 FGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKS 464 (1155)
Q Consensus 385 ~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~ 464 (1155)
.+.+++ ..+++.+.+|.+++||...
T Consensus 161 -------------------------------------------~~~~~~------~~l~t~s~D~~v~lwd~~~------ 185 (354)
T 2pbi_B 161 -------------------------------------------SFTNSD------MQILTASGDGTCALWDVES------ 185 (354)
T ss_dssp -------------------------------------------EECSSS------SEEEEEETTSEEEEEETTT------
T ss_pred -------------------------------------------EEeCCC------CEEEEEeCCCcEEEEeCCC------
Confidence 332222 2566777888999999652
Q ss_pred ccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccc
Q 001109 465 QEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHD 544 (1155)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l 544 (1155)
......+.+|...|+++.+.
T Consensus 186 ----------~~~~~~~~~h~~~v~~~~~~-------------------------------------------------- 205 (354)
T 2pbi_B 186 ----------GQLLQSFHGHGADVLCLDLA-------------------------------------------------- 205 (354)
T ss_dssp ----------CCEEEEEECCSSCEEEEEEC--------------------------------------------------
T ss_pred ----------CeEEEEEcCCCCCeEEEEEE--------------------------------------------------
Confidence 11222344566555555442
Q ss_pred cccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccC
Q 001109 545 AEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 545 ~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~ 624 (1155)
.++++++|++|+.||+|++||+..+.. +..+. +|..+|++++|+|++.+||+|+.||+|++||+...
T Consensus 206 --~~~~g~~l~sgs~Dg~v~~wd~~~~~~--~~~~~---------~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~ 272 (354)
T 2pbi_B 206 --PSETGNTFVSGGCDKKAMVWDMRSGQC--VQAFE---------THESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272 (354)
T ss_dssp --CCSSCCEEEEEETTSCEEEEETTTCCE--EEEEC---------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred --eCCCCCEEEEEeCCCeEEEEECCCCcE--EEEec---------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 123466899999999999999988763 23332 78889999999999999999999999999999764
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEee--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFS--VLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~--~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
... ..+. .+...+++++|+|+|++||+|+.||+|+|||+.++..+... .+
T Consensus 273 ~~~-------------------------~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l---~~ 324 (354)
T 2pbi_B 273 REV-------------------------AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL---FG 324 (354)
T ss_dssp EEE-------------------------EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE---CC
T ss_pred cEE-------------------------EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE---EC
Confidence 211 1222 23457999999999999999999999999999998877643 57
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEE
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCD 754 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd 754 (1155)
|..+|.+|+|+ |||++|++|+.|++|+||+
T Consensus 325 h~~~v~~l~~s----------------------pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 325 HENRVSTLRVS----------------------PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSSCEEEEEEC----------------------TTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEEC----------------------CCCCEEEEEcCCCCEEecC
Confidence 99999999999 8999999999999999996
No 44
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.9e-30 Score=294.91 Aligned_cols=210 Identities=13% Similarity=0.135 Sum_probs=160.2
Q ss_pred ccCCCCCceEEEE-----cC-CCCEEEEEEcCCeEEEEccCCc-------eEE-EEcCCCCCEEEEEEEcCCcEEEEEec
Q 001109 38 HYGIPSTASILAF-----DH-VQSLLAIGTQDGRIKVIGGDNI-------EGL-LVSPKQLAFKHLEFLQNQGFLVSISS 103 (1155)
Q Consensus 38 ~~G~~~~vs~laf-----sp-~g~lLAsgs~DG~I~vw~~~~~-------~~~-~~~~~~~~V~~l~Fs~dg~~LvS~s~ 103 (1155)
..||.+.|++++| +| ++++||+|+.||+|+||+.... ... ....|..+|.+++|+|++.+|++++.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 3699999999999 77 9999999999999999997532 222 22357889999999999999999999
Q ss_pred CCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeE
Q 001109 104 GNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEF 182 (1155)
Q Consensus 104 Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~ 182 (1155)
|++|++||+.+++++.++..| ..|++++|+|++++|++|+.||+|++|++... ... .....
T Consensus 97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~--~~~----~~~~~------------ 158 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE--CKF----SSAEK------------ 158 (343)
T ss_dssp TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC--EEE----ECCTT------------
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC--cee----eeecc------------
Confidence 999999999999999998877 78999999999999999999999999976521 110 00000
Q ss_pred ecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccc--ccccEEEEEEcCCeEEEEEcc
Q 001109 183 CPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNST--LGFSQLLLVYANGLIILWDVS 260 (1155)
Q Consensus 183 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~--~~~~~llsg~~dG~I~lWd~~ 260 (1155)
..+.. .|.++.|+|+...... ....++++++.||.|++||..
T Consensus 159 -------------------------------~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 202 (343)
T 2xzm_R 159 -------------------------------ENHSD-----WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN 202 (343)
T ss_dssp -------------------------------TSCSS-----CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT
T ss_pred -------------------------------cCCCc-----eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC
Confidence 00111 2233666665310000 001479999999999999953
Q ss_pred CCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcC
Q 001109 261 EDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~ 333 (1155)
.+..... . .|...|++++|+ |||++||+|+.||.|++||+.
T Consensus 203 -~~~~~~~-------~-----------------------~h~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 203 -FQIRYTF-------K-----------------------AHESNVNHLSIS-PNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp -TEEEEEE-------E-----------------------CCSSCEEEEEEC-TTSSEEEEEETTCEEEEEESS
T ss_pred -CceeEEE-------c-----------------------CccccceEEEEC-CCCCEEEEEcCCCeEEEEECC
Confidence 4443321 1 147789999999 999999999999999999984
No 45
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=318.30 Aligned_cols=179 Identities=17% Similarity=0.200 Sum_probs=133.2
Q ss_pred eeccCCCCCceEEEEcC-CCCEEEEEEcCCeEEEEccCC------ceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEE
Q 001109 36 TLHYGIPSTASILAFDH-VQSLLAIGTQDGRIKVIGGDN------IEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQ 108 (1155)
Q Consensus 36 ~~~~G~~~~vs~lafsp-~g~lLAsgs~DG~I~vw~~~~------~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~ 108 (1155)
.+..||.+.|++++|+| ++++||+|+.||+|+||+... ........|..+|.+++|+|++.+|++++.|++|+
T Consensus 57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 34478999999999999 999999999999999998754 22233335788999999999999999999999999
Q ss_pred EEECC---CCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecc
Q 001109 109 LWDLE---ARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPN 185 (1155)
Q Consensus 109 vWDl~---t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~ 185 (1155)
+||++ +++....+..+ .+..+.++|++
T Consensus 137 vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~------------------------------------------------- 166 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE-CIRKINLKNFG------------------------------------------------- 166 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE-EEEEEEGGGGS-------------------------------------------------
T ss_pred EEEeccccCCceeeccccc-eeEEEEccCcc-------------------------------------------------
Confidence 99995 55544433322 23333333221
Q ss_pred cccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEE
Q 001109 186 HIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVV 265 (1155)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~ 265 (1155)
....+++ +.+.+..++ ++|++|+.||.|++||+.+++.+
T Consensus 167 ------------------------------~~~~~~~-----~~~~~~~~~------~~l~~~~~d~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 167 ------------------------------KNEYAVR-----MRAFVNEEK------SLLVALTNLSRVIIFDIRTLERL 205 (437)
T ss_dssp ------------------------------SCCCEEE-----EEEEECSSC------EEEEEEETTSEEEEEETTTCCEE
T ss_pred ------------------------------cccCceE-----EEEEEcCCC------CEEEEEeCCCeEEEEeCCCCeee
Confidence 0111122 443322224 68999999999999999999887
Q ss_pred EEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 266 LVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
..... ..|...|++++|+ |+|.+|++|+.||.|++||+.+
T Consensus 206 ~~~~~----------------------------~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 206 QIIEN----------------------------SPRHGAVSSICID-EECCVLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp EEEEC----------------------------CGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETTT
T ss_pred EEEcc----------------------------CCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcCC
Confidence 65211 0146789999999 9999999999999999999865
No 46
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.7e-30 Score=290.69 Aligned_cols=203 Identities=16% Similarity=0.219 Sum_probs=168.8
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
.||.+.|++++|+|+|++||+|+.||.|+||+....+..... .|...|.+++|+|++.+|++++.|+.|++||++++++
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 99 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE
Confidence 699999999999999999999999999999998766554433 5678999999999999999999999999999999999
Q ss_pred eeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccc
Q 001109 118 TSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAF 196 (1155)
Q Consensus 118 ~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~ 196 (1155)
+..+..| ..|.+++|+|++++|++|+.||+|++|++.... .. ..+. .
T Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~---~~~~-----------------------~---- 147 (312)
T 4ery_A 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK--CL---KTLP-----------------------A---- 147 (312)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC--EE---EEEC-----------------------C----
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE--EE---EEec-----------------------C----
Confidence 9999876 789999999999999999999999999765422 11 0000 0
Q ss_pred ccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccc
Q 001109 197 NASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLK 276 (1155)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~ 276 (1155)
+..++.. +.|+|++ ++|++++.||.|++||+.+++.+.....
T Consensus 148 -------------------~~~~v~~-----~~~~~~~--------~~l~~~~~d~~i~~wd~~~~~~~~~~~~------ 189 (312)
T 4ery_A 148 -------------------HSDPVSA-----VHFNRDG--------SLIVSSSYDGLCRIWDTASGQCLKTLID------ 189 (312)
T ss_dssp -------------------CSSCEEE-----EEECTTS--------SEEEEEETTSCEEEEETTTCCEEEEECC------
T ss_pred -------------------CCCcEEE-----EEEcCCC--------CEEEEEeCCCcEEEEECCCCceeeEEec------
Confidence 1233444 9999974 5799999999999999999887654210
Q ss_pred cccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 277 TEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
.+...+.+++|+ |+|++|++|+.||.|++||+.++
T Consensus 190 -----------------------~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 190 -----------------------DDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKG 224 (312)
T ss_dssp -----------------------SSCCCEEEEEEC-TTSSEEEEEETTTEEEEEETTTT
T ss_pred -----------------------cCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCC
Confidence 135678999999 99999999999999999998653
No 47
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=7.8e-30 Score=290.65 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=119.8
Q ss_pred cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccccee
Q 001109 552 RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLN 631 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~ 631 (1155)
.++++++.|++|++||+..+.+ +..+. +|..+|++|+|+|++++||+|+.||.|++||+.....
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~--~~~~~---------~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~----- 249 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKL--KTNHI---------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH----- 249 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEE--EEEEC---------CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----
T ss_pred cEEEEEcCCCEEEEEECCCCce--eeEec---------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce-----
Confidence 3789999999999999988763 23332 7888999999999999999999999999999987432
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEec------cCCCCCC
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITD------SLSNSNS 705 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~------~~~~h~~ 705 (1155)
+..+. +...|++++|+|++.++ +++.|+.|+|||++++..+.... ...+|..
T Consensus 250 --------------------~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~ 307 (340)
T 4aow_A 250 --------------------LYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP 307 (340)
T ss_dssp --------------------EEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCC
T ss_pred --------------------eeeec-CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCC
Confidence 12233 45689999999998655 55679999999999887765432 1246899
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCc
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGH 759 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~ 759 (1155)
+|++|+|+ |||++|++|+.||+|+|||+.||+
T Consensus 308 ~v~~l~~s----------------------~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 308 QCTSLAWS----------------------ADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEEC----------------------TTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEEC----------------------CCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999 899999999999999999999986
No 48
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=1.8e-29 Score=287.63 Aligned_cols=204 Identities=14% Similarity=0.132 Sum_probs=163.3
Q ss_pred cCCCCCceEEEEcCC-CCEEEEEEcCCeEEEEccCCce-----EEE-EcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEE
Q 001109 39 YGIPSTASILAFDHV-QSLLAIGTQDGRIKVIGGDNIE-----GLL-VSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~-g~lLAsgs~DG~I~vw~~~~~~-----~~~-~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWD 111 (1155)
.||.+.|++|+|+|+ +++||+|+.||+|+||+....+ ... ...|..+|.+++|+|++.+|++++.|+.|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 599999999999998 6899999999999999975422 222 235688999999999999999999999999999
Q ss_pred CCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccc
Q 001109 112 LEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQRE 190 (1155)
Q Consensus 112 l~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~ 190 (1155)
............+ ..+..+.++++++++++|+.||.+++|+..... .. .....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~--~~----~~~~~-------------------- 168 (340)
T 4aow_A 115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC--KY----TVQDE-------------------- 168 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--EE----EECSS--------------------
T ss_pred ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc--eE----EEEec--------------------
Confidence 9998877766654 778889999999999999999999998543321 10 00000
Q ss_pred ccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecc
Q 001109 191 KGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGS 270 (1155)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~ 270 (1155)
+ +... +..+.|+++... ..+++++.|+.|++||+.+++++....
T Consensus 169 -~-----------------------~~~~-----v~~~~~~~~~~~------~~~~s~~~d~~i~i~d~~~~~~~~~~~- 212 (340)
T 4aow_A 169 -S-----------------------HSEW-----VSCVRFSPNSSN------PIIVSCGWDKLVKVWNLANCKLKTNHI- 212 (340)
T ss_dssp -S-----------------------CSSC-----EEEEEECSCSSS------CEEEEEETTSCEEEEETTTTEEEEEEC-
T ss_pred -c-----------------------ccCc-----ccceEEccCCCC------cEEEEEcCCCEEEEEECCCCceeeEec-
Confidence 0 1222 333888887654 678999999999999999998876521
Q ss_pred cccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 271 KDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
.|...|++++|+ |+|++|++|+.||.|++||+.+
T Consensus 213 -----------------------------~h~~~v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 213 -----------------------------GHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp -----------------------------CCSSCEEEEEEC-TTSSEEEEEETTCEEEEEETTT
T ss_pred -----------------------------CCCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEecc
Confidence 147889999999 9999999999999999999864
No 49
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7.3e-32 Score=328.67 Aligned_cols=361 Identities=11% Similarity=0.086 Sum_probs=227.1
Q ss_pred ccCCCCCceEEEEcCCC---------CEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEE
Q 001109 38 HYGIPSTASILAFDHVQ---------SLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQ 108 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g---------~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~ 108 (1155)
.+-+.+.|.+|+|+|++ ++||+|+.++.. -..+|++..|++++.|++|+
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~----------------------~~~~~~~~~laS~s~D~tI~ 186 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD----------------------EPLNEHLEMFDKEKHSSCIQ 186 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------CEEEE
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC----------------------CccchhhhhhccCCCCceEE
Confidence 34467899999999997 899999977520 01368888999999999999
Q ss_pred EEECCCCcee----eeecCC-CceeEEEEecC------CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeece
Q 001109 109 LWDLEARRIT----STLPWE-SNITAFSVIFG------TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNH 177 (1155)
Q Consensus 109 vWDl~t~~~~----~~l~~~-~~Vtsva~spd------~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 177 (1155)
|||+.++++. .++..+ +.|++++|+|+ +.+|++|+.||+|++|++........ .++.+...
T Consensus 187 iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~-~~~~~~~p------- 258 (524)
T 2j04_B 187 IFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH-VFKMCEKP------- 258 (524)
T ss_dssp EEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS-EEECCCSC-------
T ss_pred EEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc-cceeecCc-------
Confidence 9999887753 334554 78999999997 57999999999999998765321000 00000000
Q ss_pred eEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEE
Q 001109 178 LLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILW 257 (1155)
Q Consensus 178 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lW 257 (1155)
...+. .+... |++++|+|. .+|++|+.||+|++|
T Consensus 259 ----------------------~~~l~----------~h~~~-----v~sv~~s~~---------~~lasgs~DgtV~lW 292 (524)
T 2j04_B 259 ----------------------SLTLS----------LADSL-----ITTFDFLSP---------TTVVCGFKNGFVAEF 292 (524)
T ss_dssp ----------------------SEEEC----------CTTTC-----EEEEEESSS---------SEEEEEETTSEEEEE
T ss_pred ----------------------eEEEE----------cCCCC-----EEEEEecCC---------CeEEEEeCCCEEEEE
Confidence 00000 01233 444999874 469999999999999
Q ss_pred EccCCeE-EEEecccccccccccccCCCCCCCCCCcccccccccccCCccEE--EEEecCC-CeEEEEEcCCcEEEEEcC
Q 001109 258 DVSEDKV-VLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSL--CWASNDG-SVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 258 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl--~~s~pdG-~~lasg~~DG~I~lWd~~ 333 (1155)
|+.++.. ... +. .|...|+++ +|+ ++| .+||||+.||+|+|||++
T Consensus 293 D~~~~~~~~~~-------~~-----------------------~H~~~V~sv~~~~s-~~g~~~laS~S~D~tvklWD~~ 341 (524)
T 2j04_B 293 DLTDPEVPSFY-------DQ-----------------------VHDSYILSVSTAYS-DFEDTVVSTVAVDGYFYIFNPK 341 (524)
T ss_dssp ETTBCSSCSEE-------EE-----------------------CSSSCEEEEEEECC-TTSCCEEEEEETTSEEEEECGG
T ss_pred ECCCCCCceEE-------ee-----------------------cccccEEEEEEEcC-CCCCeEEEEeccCCeEEEEECC
Confidence 9987632 111 01 157889999 466 888 899999999999999986
Q ss_pred CCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceec
Q 001109 334 AAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCI 413 (1155)
Q Consensus 334 s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~ 413 (1155)
+..... .+
T Consensus 342 ~~~~~~-------------------------------------------------------~~----------------- 349 (524)
T 2j04_B 342 DIATTK-------------------------------------------------------TT----------------- 349 (524)
T ss_dssp GHHHHC-------------------------------------------------------EE-----------------
T ss_pred CCCccc-------------------------------------------------------cc-----------------
Confidence 532100 00
Q ss_pred eeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCC--CcceEE
Q 001109 414 GRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIE--PHMTVG 491 (1155)
Q Consensus 414 ~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~--~~It~~ 491 (1155)
. +|. ..|.+
T Consensus 350 --------------------------------------~------------------------------~~~~~~~v~~- 360 (524)
T 2j04_B 350 --------------------------------------V------------------------------SRFRGSNLVP- 360 (524)
T ss_dssp --------------------------------------E------------------------------EECSCCSCCC-
T ss_pred --------------------------------------c------------------------------cccccCcccc-
Confidence 0 000 00111
Q ss_pred EEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCC
Q 001109 492 KLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYP 571 (1155)
Q Consensus 492 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~ 571 (1155)
+ +|+|+++.+++|+.|++||+||+..+
T Consensus 361 ----------------------------------------------------v-~fsp~~~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 361 ----------------------------------------------------V-VYCPQIYSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp ----------------------------------------------------E-EEETTTTEEEEECSSSEEEEEETTCT
T ss_pred ----------------------------------------------------e-EeCCCcCeEEEeCCCCcEEEEECccc
Confidence 1 55677778999999999999999877
Q ss_pred CeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCce
Q 001109 572 TLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQC 651 (1155)
Q Consensus 572 ~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~ 651 (1155)
... ..+ .+|..+|++|+|+|+|++||+|+.||+|++|++....... ...
T Consensus 388 ~~~--~~l---------~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~--------------------~~~ 436 (524)
T 2j04_B 388 FAV--HPL---------VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHG--------------------IKN 436 (524)
T ss_dssp TCC--EEE---------EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTC--------------------C--
T ss_pred ccc--eee---------ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccc--------------------ccc
Confidence 621 222 2688899999999999999999999999999986531100 000
Q ss_pred eEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecC-CccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCC
Q 001109 652 KALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIS-TFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDI 730 (1155)
Q Consensus 652 ~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~-~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~ 730 (1155)
... ..+...|++++|||+|+.+.. . | .+.+|+.. ++.++.. +.+|..+|.+|+|++..
T Consensus 437 ~~~-~~~~~~v~~v~~sp~g~~~~~-~-~-~~~~~~~~~~g~~~~~---l~gh~~~V~~Vafsp~~-------------- 495 (524)
T 2j04_B 437 SSA-TQKSLRLWKWDYSIKDDKYRI-D-S-SYEVYPLTVNDVSKAK---IDAHGINITCTKWNETS-------------- 495 (524)
T ss_dssp -----CCCCEEEECBCCSSSCEEEE-C-C-CCCCCC----------------CCCSCCCEEECCST--------------
T ss_pred Ccc-ceeeeEEEEeccCCCCCeEEc-c-C-CceecccccCCcceee---ecCCCceEEEEECCCCC--------------
Confidence 000 012235789999999986532 2 2 24455443 3444432 46799999999999322
Q ss_pred CCCCCCCCcEEEEEeCCceEEEEECC
Q 001109 731 NSSNDTKKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 731 ~~~~~pd~~~L~s~s~Dg~I~vwd~~ 756 (1155)
+.+.+|++|+.||+|+||++.
T Consensus 496 -----~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 496 -----AGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp -----TTTTEEEEECTTSEEEEEECS
T ss_pred -----CccHHHHhhccCceEEEEEcc
Confidence 235699999999999999976
No 50
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.2e-30 Score=293.99 Aligned_cols=203 Identities=13% Similarity=0.158 Sum_probs=156.2
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc--eEEEE--cC-CCCCEEEEEEEcCCcEEEEEecCCeEEEEECC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI--EGLLV--SP-KQLAFKHLEFLQNQGFLVSISSGNEIQLWDLE 113 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~--~~~~~--~~-~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~ 113 (1155)
.||.+.|.+++|+|+ +||+|+.||+|+||+.... ..... .. |..+|.+|+|+|++.+|++++.|++|+|||++
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 599999999999997 9999999999999998753 33322 23 78899999999999999999999999999995
Q ss_pred C-------CceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecc
Q 001109 114 A-------RRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPN 185 (1155)
Q Consensus 114 t-------~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~ 185 (1155)
. .+++..+..| ..|++++|+|++++|++|+.||+|++|+++....... .+ .
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~----~~--~--------------- 147 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE----CI--S--------------- 147 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCE----EE--E---------------
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeE----EE--E---------------
Confidence 3 3456677776 7899999999999999999999999998743211000 00 0
Q ss_pred cccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCe--
Q 001109 186 HIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDK-- 263 (1155)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~-- 263 (1155)
.+.+ +...|.+ +.|+|++ ++|++|+.||.|++||..++.
T Consensus 148 ---~~~~-----------------------h~~~v~~-----v~~~p~~--------~~l~s~s~D~~i~iW~~~~~~~~ 188 (330)
T 2hes_X 148 ---VLQE-----------------------HSQDVKH-----VIWHPSE--------ALLASSSYDDTVRIWKDYDDDWE 188 (330)
T ss_dssp ---EECC-----------------------CSSCEEE-----EEECSSS--------SEEEEEETTSCEEEEEEETTEEE
T ss_pred ---Eecc-----------------------CCCceEE-----EEECCCC--------CEEEEEcCCCeEEEEECCCCCee
Confidence 0000 1233444 9999974 579999999999999988763
Q ss_pred EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecC--CCeEEEEEcCCcEEEEEcCC
Q 001109 264 VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASND--GSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pd--G~~lasg~~DG~I~lWd~~s 334 (1155)
++... . .|...|.+++|+ |+ +.+|++|+.||+|++||+.+
T Consensus 189 ~~~~~-------~-----------------------~h~~~v~~~~~~-~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 189 CVAVL-------N-----------------------GHEGTVWSSDFD-KTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EEEEE-------C-----------------------CCSSCEEEEEEC-CSSSSCEEEEEETTSCEEEEEEEE
T ss_pred EEEEc-------c-----------------------CCCCcEEEEEec-CCCCeeEEEEEeCCCeEEEEEecC
Confidence 33321 1 157889999999 88 77999999999999999864
No 51
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=2.7e-29 Score=284.41 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=120.7
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.++|++++|++|+.||+|++||+..+.. +..+. ..+..+|.+++|+|++++|++|+.||.|++||+....
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASGQC--LKTLI--------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 225 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCE--EEEEC--------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCce--eeEEe--------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 3446677899999999999999988763 22221 1455689999999999999999999999999998743
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCe---EEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPI---CNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~V---tslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
. ...+.+|...+ ......+++++||+|+.||.|+|||+.++.++... .+
T Consensus 226 ~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~ 277 (312)
T 4ery_A 226 C-------------------------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL---QG 277 (312)
T ss_dssp E-------------------------EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE---CC
T ss_pred E-------------------------EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh---hc
Confidence 2 23455665543 23334478899999999999999999999887654 46
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEe--CCceEEEEECC
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMT--KDAHIVVCDST 756 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s--~Dg~I~vwd~~ 756 (1155)
|..+|.+++|+ |++++|++++ .|++|++|+.+
T Consensus 278 h~~~v~~~~~~----------------------p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 278 HTDVVISTACH----------------------PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSCEEEEEEC----------------------SSSSEEEEEECTTTCCEEEEECC
T ss_pred cCCcEEEEeec----------------------CcCCceEEEEccCCccEEEecCC
Confidence 99999999998 8899999997 69999999864
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-28 Score=281.12 Aligned_cols=221 Identities=14% Similarity=0.089 Sum_probs=174.4
Q ss_pred cceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEE
Q 001109 33 PRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 33 ~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWD 111 (1155)
.+.....||.+.|++++|+|+|++||+|+.||.|+||+..+.+.+... .|...|.+++|+|++.+|++++.|++|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 444445799999999999999999999999999999998877766555 4788999999999999999999999999999
Q ss_pred CCCCceeeeecCCCceeEEEEecCCCEEEEEeCC-----CcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 112 LEARRITSTLPWESNITAFSVIFGTSYMYIGDEY-----GMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 112 l~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~d-----G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
+.+++++..+.....|++++|+|+++++++++.+ |.|++|++........ +..... ..
T Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~---~~~~~~--------------~~ 165 (369)
T 3zwl_B 103 VSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHE---LTKVSE--------------EP 165 (369)
T ss_dssp TTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCC---EEEECS--------------SC
T ss_pred CCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcccee---eccccc--------------ce
Confidence 9999999999878999999999999999999999 9999998776431110 000000 00
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccC-CeEE
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSE-DKVV 265 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~-~~~~ 265 (1155)
... +. .+.. . ..+.+++|+|++ +.|++++.||.|++||+.+ ++.+
T Consensus 166 ~~~-------------~~----------~~~~--~-~~~~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~~~~ 211 (369)
T 3zwl_B 166 IHK-------------II----------THEG--L-DAATVAGWSTKG--------KYIIAGHKDGKISKYDVSNNYEYV 211 (369)
T ss_dssp SEE-------------EE----------CCTT--C-CCEEEEEECGGG--------CEEEEEETTSEEEEEETTTTTEEE
T ss_pred eee-------------cc----------CCcC--c-cceeEEEEcCCC--------CEEEEEcCCCEEEEEECCCCcEeE
Confidence 000 00 0011 0 023449999974 5799999999999999998 5655
Q ss_pred EEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 266 LVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
.... .|...|.+++|+ |+|++|++++.||.|++||+.+.
T Consensus 212 ~~~~------------------------------~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 212 DSID------------------------------LHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEEE------------------------------CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEe------------------------------cCCCceeEEEEC-CCCCEEEEecCCceEEEEECCCC
Confidence 4311 146789999999 99999999999999999999765
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.9e-28 Score=293.39 Aligned_cols=344 Identities=16% Similarity=0.189 Sum_probs=250.4
Q ss_pred CcceeeccCCCCCc-eEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEE
Q 001109 32 DPRVTLHYGIPSTA-SILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQL 109 (1155)
Q Consensus 32 ~~~~~~~~G~~~~v-s~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~v 109 (1155)
.+......||...+ ++++| ++++||+|+.||+|+||+..+.+.+..+ .|..+|.+++|++++ +|++++.|++|++
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 33444456998885 66666 4679999999999999999888777655 478899999999986 9999999999999
Q ss_pred EECCCCceeeeecCC-CceeEEEEe--cCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 110 WDLEARRITSTLPWE-SNITAFSVI--FGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 110 WDl~t~~~~~~l~~~-~~Vtsva~s--pd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
||+++++++..+..| +.|++++|+ +++.++++|+.||+|++|++....... ..
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~--------~~---------------- 243 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP--------DH---------------- 243 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---------------------------
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc--------cc----------------
Confidence 999999999999866 889999998 578999999999999999766532100 00
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEE
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVL 266 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~ 266 (1155)
. ....... +.+.|.... . .+.
T Consensus 244 -----~-----------------------~~~~~~~-----~~~~~~~~~-------~-------------------~~~ 264 (464)
T 3v7d_B 244 -----G-----------------------EEHDYPL-----VFHTPEENP-------Y-------------------FVG 264 (464)
T ss_dssp -------------------------------CCSSE-----EESCGGGCT-------T-------------------EEE
T ss_pred -----c-----------------------ccCCcce-----EeeccCCCe-------E-------------------EEE
Confidence 0 0000001 223332111 0 111
Q ss_pred EecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCC
Q 001109 267 VRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENS 346 (1155)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~ 346 (1155)
.. . .|...|.++ + +++.+|++|+.||.|++||+.++..
T Consensus 265 ~~-------~-----------------------~~~~~v~~~--~-~~~~~l~~~~~d~~i~vwd~~~~~~--------- 302 (464)
T 3v7d_B 265 VL-------R-----------------------GHMASVRTV--S-GHGNIVVSGSYDNTLIVWDVAQMKC--------- 302 (464)
T ss_dssp EE-------C-----------------------CCSSCEEEE--E-EETTEEEEEETTSCEEEEETTTTEE---------
T ss_pred Ec-------c-----------------------CccceEEEE--c-CCCCEEEEEeCCCeEEEEECCCCcE---------
Confidence 10 0 134556665 4 7899999999999999999864310
Q ss_pred CCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeE
Q 001109 347 STDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVD 426 (1155)
Q Consensus 347 ~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d 426 (1155)
+.
T Consensus 303 -------------------------------------------------~~----------------------------- 304 (464)
T 3v7d_B 303 -------------------------------------------------LY----------------------------- 304 (464)
T ss_dssp -------------------------------------------------EE-----------------------------
T ss_pred -------------------------------------------------EE-----------------------------
Confidence 00
Q ss_pred EEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHH
Q 001109 427 MVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVEL 506 (1155)
Q Consensus 427 ~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~ 506 (1155)
. +..|...|+++
T Consensus 305 --------------------------~---------------------------~~~~~~~v~~~--------------- 316 (464)
T 3v7d_B 305 --------------------------I---------------------------LSGHTDRIYST--------------- 316 (464)
T ss_dssp --------------------------E---------------------------ECCCSSCEEEE---------------
T ss_pred --------------------------E---------------------------ecCCCCCEEEE---------------
Confidence 0 00122233333
Q ss_pred HHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCcc
Q 001109 507 SKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGI 586 (1155)
Q Consensus 507 ~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i 586 (1155)
.++|+++++++|+.||+|++||+.++.. +..+.
T Consensus 317 ---------------------------------------~~~~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~------ 349 (464)
T 3v7d_B 317 ---------------------------------------IYDHERKRCISASMDTTIRIWDLENGEL--MYTLQ------ 349 (464)
T ss_dssp ---------------------------------------EEETTTTEEEEEETTSCEEEEETTTTEE--EEEEC------
T ss_pred ---------------------------------------EEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEEe------
Confidence 3345666899999999999999988762 34443
Q ss_pred ccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEE
Q 001109 587 RTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLK 666 (1155)
Q Consensus 587 ~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtsla 666 (1155)
+|..+|.+++|+ +.+|++|+.||.|++||+...... .. ..|...+..++
T Consensus 350 ---~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~-------------------------~~-~~~~~~~~~~~ 398 (464)
T 3v7d_B 350 ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK-------------------------FS-YHHTNLSAITT 398 (464)
T ss_dssp ---CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE-------------------------EE-EECTTCCCEEE
T ss_pred ---CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee-------------------------ee-ecCCCCccEEE
Confidence 788899999998 579999999999999999874321 11 23667788899
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC
Q 001109 667 FSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK 746 (1155)
Q Consensus 667 fSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~ 746 (1155)
|+|++++||+|+ ||.|+|||+.+++.++.. ..+|..+|.+++|+ ++.++++++.
T Consensus 399 ~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~--~~~~~~~v~~v~~~-----------------------~~~l~~~~~~ 452 (464)
T 3v7d_B 399 FYVSDNILVSGS-ENQFNIYNLRSGKLVHAN--ILKDADQIWSVNFK-----------------------GKTLVAAVEK 452 (464)
T ss_dssp EEECSSEEEEEE-TTEEEEEETTTCCEEESC--TTTTCSEEEEEEEE-----------------------TTEEEEEEEE
T ss_pred EEeCCCEEEEec-CCeEEEEECCCCcEEehh--hccCCCcEEEEEec-----------------------CCEEEEEEEe
Confidence 999999999999 899999999999988653 34689999999997 2456667777
Q ss_pred CceEEEE
Q 001109 747 DAHIVVC 753 (1155)
Q Consensus 747 Dg~I~vw 753 (1155)
|+.+.+|
T Consensus 453 ~g~~~i~ 459 (464)
T 3v7d_B 453 DGQSFLE 459 (464)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 8776655
No 54
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=4.1e-28 Score=289.40 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=118.7
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccce
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETL 630 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~ 630 (1155)
++.+++|+.||+|++||+..+.. +..+. +|...+.+++++ +.+|++|+.||.|++||+..+..
T Consensus 289 ~~~l~~~~~d~~i~i~d~~~~~~--~~~~~---------~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~---- 351 (445)
T 2ovr_B 289 GIHVVSGSLDTSIRVWDVETGNC--IHTLT---------GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC---- 351 (445)
T ss_dssp SSEEEEEETTSCEEEEETTTCCE--EEEEC---------CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE----
T ss_pred CCEEEEEeCCCeEEEEECCCCCE--EEEEc---------CCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcE----
Confidence 34789999999999999988763 23332 677788888774 66999999999999999976432
Q ss_pred eeeccCCceEEEecCCCCCceeEEeec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccC--CCCCC
Q 001109 631 NLVTETGKEVHILPGGDGPQCKALFSV---LNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSL--SNSNS 705 (1155)
Q Consensus 631 ~~v~~~~~~~~~~~~~~g~~~~~~l~~---h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~--~~h~~ 705 (1155)
...+.. |.++|++++|+ +++||+|+.||.|+|||+.+++.+...... .+|.+
T Consensus 352 ---------------------~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 352 ---------------------LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 408 (445)
T ss_dssp ---------------------EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred ---------------------EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence 123343 88999999995 689999999999999999999887765211 35889
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCce----EEEEECCC
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAH----IVVCDSTT 757 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~----I~vwd~~t 757 (1155)
+|++++|+ |++.+|++|+.||+ |.|||...
T Consensus 409 ~v~~~~~s----------------------~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 409 VVWRIRAS----------------------NTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEEEC----------------------SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eEEEEEec----------------------CCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999 89999999999998 99999763
No 55
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=3.8e-29 Score=291.30 Aligned_cols=157 Identities=7% Similarity=-0.021 Sum_probs=125.8
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC----eEEEEEe
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG----LVWLYNL 621 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG----~V~lwd~ 621 (1155)
+|+|+++++++++.|+ +++|+...+....... ..+|...|.+++|+|+++++++++.|+ .+++|++
T Consensus 183 ~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~---------~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~ 252 (365)
T 4h5i_A 183 HFSTDGKVVAYITGSS-LEVISTVTGSCIARKT---------DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI 252 (365)
T ss_dssp EECTTSSEEEEECSSC-EEEEETTTCCEEEEEC---------CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred EEccCCceEEecccee-EEEEEeccCcceeeee---------cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence 5678888999998555 5556555554221111 126778999999999999999999887 6788887
Q ss_pred ccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCC
Q 001109 622 IKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLS 701 (1155)
Q Consensus 622 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~ 701 (1155)
...... ......+.+|..+|++|+|||||++||+|+.||+|+|||+++++++.+. +.
T Consensus 253 ~~~~~~---------------------~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~--~~ 309 (365)
T 4h5i_A 253 KSGNTS---------------------VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF--KQ 309 (365)
T ss_dssp ETTEEE---------------------EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE--TT
T ss_pred ccceec---------------------ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe--cC
Confidence 654211 0012456789999999999999999999999999999999999988764 46
Q ss_pred CCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 702 NSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 702 ~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
+|..+|++|+|+ |||++|++||.|++|+|||+.+
T Consensus 310 gH~~~V~~v~fS----------------------pdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 310 AHSFAITEVTIS----------------------PDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SSSSCEEEEEEC----------------------TTSCEEEEEETTSEEEEEECCT
T ss_pred cccCCEEEEEEC----------------------CCCCEEEEEeCCCeEEEEEcCC
Confidence 899999999999 9999999999999999999864
No 56
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=5.2e-29 Score=286.24 Aligned_cols=331 Identities=12% Similarity=0.109 Sum_probs=219.1
Q ss_pred eeccCCCCCceEEEEcCC----CCEEEEEEcCCeEEEEccCCceEEEE---c---CCCCCEEEEEEEcC----CcEEEEE
Q 001109 36 TLHYGIPSTASILAFDHV----QSLLAIGTQDGRIKVIGGDNIEGLLV---S---PKQLAFKHLEFLQN----QGFLVSI 101 (1155)
Q Consensus 36 ~~~~G~~~~vs~lafsp~----g~lLAsgs~DG~I~vw~~~~~~~~~~---~---~~~~~V~~l~Fs~d----g~~LvS~ 101 (1155)
.+..||.+.|++++|+|+ ..++++++.+|.|+||+....+.+.. + .+...|.+++|+|+ +.+|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 566799999999999994 45666666778999999875433221 1 25678999999999 6789999
Q ss_pred ecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEe
Q 001109 102 SSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLL 180 (1155)
Q Consensus 102 s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l 180 (1155)
+.|+.|++||+.+++.+..+..+ ..|++
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~--------------------------------------------------- 120 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINE--------------------------------------------------- 120 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEE---------------------------------------------------
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEE---------------------------------------------------
Confidence 99999999999887766544322 22222
Q ss_pred eEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEcc
Q 001109 181 EFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVS 260 (1155)
Q Consensus 181 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~ 260 (1155)
+.|+|.+ + ++|++++.||.|++||+.
T Consensus 121 -----------------------------------------------~~~~~~~-~------~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 121 -----------------------------------------------LKFHPRD-P------NLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp -----------------------------------------------EEECSSC-T------TEEEEEETTSCEEEEETT
T ss_pred -----------------------------------------------EEECCCC-C------CEEEEEeCCCeEEEEEee
Confidence 6666622 2 467777777777888877
Q ss_pred CCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccc
Q 001109 261 EDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKD 340 (1155)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~ 340 (1155)
+++.+..... +. .|...|++++|+ |+|.+|++|+.||.|++||+.+......
T Consensus 147 ~~~~~~~~~~----~~-----------------------~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 198 (366)
T 3k26_A 147 TDTLVAIFGG----VE-----------------------GHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKRMMNA 198 (366)
T ss_dssp TTEEEEEECS----TT-----------------------SCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESCSHHHHHH
T ss_pred cCeEEEEecc----cc-----------------------cccCceeEEEEC-CCCCEEEEecCCCCEEEEECCCCccccc
Confidence 7776654210 00 147789999999 9999999999999999999987532111
Q ss_pred cccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecC
Q 001109 341 WKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLER 420 (1155)
Q Consensus 341 ~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~ 420 (1155)
+.. .+.|.+ ++.. +.
T Consensus 199 ------------~~~----------~~~~~~-------~~~~-------------~~----------------------- 213 (366)
T 3k26_A 199 ------------IKE----------SYDYNP-------NKTN-------------RP----------------------- 213 (366)
T ss_dssp ------------HHH----------HHTCCG-------GGCS-------------SC-----------------------
T ss_pred ------------cce----------eEEecC-------CCCc-------------cc-----------------------
Confidence 000 000000 0000 00
Q ss_pred CCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCC
Q 001109 421 KGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDG 500 (1155)
Q Consensus 421 ~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~ 500 (1155)
+ ........ .......|...|+++.+
T Consensus 214 ---~----------------------~~~~~~~~----------------------~~~~~~~~~~~v~~~~~------- 239 (366)
T 3k26_A 214 ---F----------------------ISQKIHFP----------------------DFSTRDIHRNYVDCVRW------- 239 (366)
T ss_dssp ---C----------------------CCEEECCC----------------------SEEECSSCSSCCCEEEE-------
T ss_pred ---c----------------------cceeeccC----------------------ccccccCCcceEEEEEE-------
Confidence 0 00000000 00011123444444333
Q ss_pred chhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeC
Q 001109 501 KLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFG 580 (1155)
Q Consensus 501 ~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~ 580 (1155)
+ ++++++|+.||.|++||+...... +..+.
T Consensus 240 -----------------------------------------------~--~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~ 269 (366)
T 3k26_A 240 -----------------------------------------------L--GDLILSKSCENAIVCWKPGKMEDD-IDKIK 269 (366)
T ss_dssp -----------------------------------------------E--TTEEEEECSSSEEEEEEESSTTCC-GGGCC
T ss_pred -----------------------------------------------c--CCEEEEEecCCEEEEEeCCCcccc-ccccc
Confidence 2 458999999999999998776420 00000
Q ss_pred CCcC----ccccCCCCCCeEEEEEecC--CCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEE
Q 001109 581 SELP----GIRTATESESVSALEFCSV--TLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKAL 654 (1155)
Q Consensus 581 ~~~~----~i~~~gh~~~V~~lafspd--g~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~ 654 (1155)
.... -....+|..+|++++|+|+ +++|++|+.||.|++|++..+..... ....
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~---------------------~~~~ 328 (366)
T 3k26_A 270 PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA---------------------KCTT 328 (366)
T ss_dssp TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC---------------------EEEE
T ss_pred cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc---------------------cceE
Confidence 0000 0112367889999999999 99999999999999999987543210 1134
Q ss_pred eecC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 001109 655 FSVL--NSPICNLKFSNFGARLAVGFECSQVAMLDIS 689 (1155)
Q Consensus 655 l~~h--~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~ 689 (1155)
+.+| .+.|++|+|+|+|++||+|+.||.|+|||+.
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 5566 7999999999999999999999999999986
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-28 Score=276.46 Aligned_cols=158 Identities=11% Similarity=0.093 Sum_probs=132.5
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+++|++++|++|+.||.|++||+.... ..+..+. +|..+|.+++|+|++.+|++++.||.|++||+....
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNY-EYVDSID---------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTT-EEEEEEE---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCc-EeEEEEe---------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 556778899999999999999998732 1223332 577899999999999999999999999999998743
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCC--------------cEEEEecCCc
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECS--------------QVAMLDISTF 691 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg--------------~V~lWDi~~~ 691 (1155)
. ...+. +...+++++|+|+++++++|+.++ .|++||+.++
T Consensus 252 ~-------------------------~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 252 V-------------------------LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp E-------------------------EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred e-------------------------eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 2 12233 778999999999999999999998 8999999999
Q ss_pred cEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 692 SVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 692 ~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
..+... .+|..+|.+++|+ ||+++|++++.||+|+|||..++......
T Consensus 306 ~~~~~~---~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 306 EEIGRV---QGHFGPLNTVAIS----------------------PQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp CEEEEE---ECCSSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred cchhhe---ecccCcEEEEEEC----------------------CCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 887654 4599999999999 89999999999999999999887654443
No 58
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=1.4e-28 Score=287.30 Aligned_cols=116 Identities=14% Similarity=0.125 Sum_probs=100.3
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce-------EEEEcCCCCCEEEEEEEcC----C---cEEEEEec
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE-------GLLVSPKQLAFKHLEFLQN----Q---GFLVSISS 103 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~-------~~~~~~~~~~V~~l~Fs~d----g---~~LvS~s~ 103 (1155)
..||.+.|++++|+| ++||+|+.||+|+||+....+ ......|..+|.+++|+|+ + .+|++++.
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC
Confidence 369999999999999 899999999999999987655 3333467889999999999 9 99999999
Q ss_pred CCeEEEEECCCCce-----eeeecCC------CceeEEEEe----cCCCE-EEEEeCCCcEEEEEecC
Q 001109 104 GNEIQLWDLEARRI-----TSTLPWE------SNITAFSVI----FGTSY-MYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 104 Dg~I~vWDl~t~~~-----~~~l~~~------~~Vtsva~s----pd~~~-l~~G~~dG~V~vw~~d~ 155 (1155)
|+.|++||+.+++. +..+..+ ..|++++|+ |++++ |++|+.+|.|++|++..
T Consensus 90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 90 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 99999999999887 7777766 889999999 99999 99999999999997654
No 59
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=3.3e-28 Score=283.97 Aligned_cols=350 Identities=12% Similarity=0.126 Sum_probs=216.3
Q ss_pred eeccCCCCCceEEEEcC-CCCEEEEEEcCCeEEEEccCCceEEEE--------------cCCCCCEEEEEEEc-CCcEEE
Q 001109 36 TLHYGIPSTASILAFDH-VQSLLAIGTQDGRIKVIGGDNIEGLLV--------------SPKQLAFKHLEFLQ-NQGFLV 99 (1155)
Q Consensus 36 ~~~~G~~~~vs~lafsp-~g~lLAsgs~DG~I~vw~~~~~~~~~~--------------~~~~~~V~~l~Fs~-dg~~Lv 99 (1155)
....+|.+.|++++|+| ++++||+|+.||.|+||+..+.+.... ..|...|.+++|+| ++.+|+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 34468999999999999 999999999999999999875432111 12678999999999 677999
Q ss_pred EEecCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeE
Q 001109 100 SISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLL 179 (1155)
Q Consensus 100 S~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 179 (1155)
+++.|+.|++||+.+++....+.....+.+
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------------------------------------------------- 146 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYS-------------------------------------------------- 146 (408)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEE--------------------------------------------------
T ss_pred EEeCCCeEEEeeCCCCccceeccCCCceee--------------------------------------------------
Confidence 999999999999988775544433232222
Q ss_pred eeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecc-cccccccccEEEEEEcCCeEEEEE
Q 001109 180 LEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQK-HVNSTLGFSQLLLVYANGLIILWD 258 (1155)
Q Consensus 180 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~-~~~~~~~~~~llsg~~dG~I~lWd 258 (1155)
+.++|.. .+ ..+++++.||.|++||
T Consensus 147 ------------------------------------------------~~~~~~~~~~------~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 147 ------------------------------------------------HHMSPVSTKH------CLVAVGTRGPKVQLCD 172 (408)
T ss_dssp ------------------------------------------------EEECSSCSSC------CEEEEEESSSSEEEEE
T ss_pred ------------------------------------------------eEeecCCCCC------cEEEEEcCCCeEEEEe
Confidence 3333321 12 4688888899999999
Q ss_pred ccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCC-eEEEEEcCCcEEEEEcCCCCC
Q 001109 259 VSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGS-VLAVGYVDGDILLWNLRAAAS 337 (1155)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~-~lasg~~DG~I~lWd~~s~~~ 337 (1155)
+.+++.+.... .|...|++++|+ |+++ .|++|+.||.|++||+.+...
T Consensus 173 ~~~~~~~~~~~------------------------------~~~~~v~~~~~~-~~~~~ll~~~~~dg~i~i~d~~~~~~ 221 (408)
T 4a11_B 173 LKSGSCSHILQ------------------------------GHRQEILAVSWS-PRYDYILATASADSRVKLWDVRRASG 221 (408)
T ss_dssp SSSSCCCEEEC------------------------------CCCSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTCSSC
T ss_pred CCCcceeeeec------------------------------CCCCcEEEEEEC-CCCCcEEEEEcCCCcEEEEECCCCCc
Confidence 88877654311 146789999999 9998 599999999999999976431
Q ss_pred ccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeee
Q 001109 338 TKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVD 417 (1155)
Q Consensus 338 ~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~ 417 (1155)
.. ..+ ...
T Consensus 222 ~~-------------------------~~~----------------------------------~~~------------- 229 (408)
T 4a11_B 222 CL-------------------------ITL----------------------------------DQH------------- 229 (408)
T ss_dssp CS-------------------------EEC----------------------------------CTT-------------
T ss_pred cc-------------------------ccc----------------------------------ccc-------------
Confidence 10 000 000
Q ss_pred ecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeec
Q 001109 418 LERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVC 497 (1155)
Q Consensus 418 l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~ 497 (1155)
.+.. ..........|...|+++
T Consensus 230 ------------------------------~~~~----------------------~~~~~~~~~~~~~~v~~~------ 251 (408)
T 4a11_B 230 ------------------------------NGKK----------------------SQAVESANTAHNGKVNGL------ 251 (408)
T ss_dssp ------------------------------TTCS----------------------CCCTTTSSCSCSSCEEEE------
T ss_pred ------------------------------cccc----------------------ceeeccccccccCceeEE------
Confidence 0000 000000111233333333
Q ss_pred CCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeee
Q 001109 498 RDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIH 577 (1155)
Q Consensus 498 ~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~ 577 (1155)
+++|++++|++|+.||.|++||+..+....
T Consensus 252 ------------------------------------------------~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-- 281 (408)
T 4a11_B 252 ------------------------------------------------CFTSDGLHLLTVGTDNRMRLWNSSNGENTL-- 281 (408)
T ss_dssp ------------------------------------------------EECTTSSEEEEEETTSCEEEEETTTCCBCC--
T ss_pred ------------------------------------------------EEcCCCCEEEEecCCCeEEEEECCCCccce--
Confidence 556778899999999999999998876321
Q ss_pred eeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeec
Q 001109 578 VFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSV 657 (1155)
Q Consensus 578 ~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~ 657 (1155)
........ .....+........+..+++++.+|.|++|++..+. ++..+.+
T Consensus 282 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------------------------~~~~~~~ 332 (408)
T 4a11_B 282 VNYGKVCN----NSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE-------------------------QITMLKG 332 (408)
T ss_dssp CCCCCCCC----CCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC-------------------------EEEEECC
T ss_pred eccccccc----cccccceeEEecCCCceEEEEecCCEEEEEECcCCc-------------------------ceeeecc
Confidence 11111100 111123333334456677888889999999998743 2356788
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCC
Q 001109 658 LNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTK 737 (1155)
Q Consensus 658 h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd 737 (1155)
|.+.|++++|+|+|++||+|+.||.|+|||+.++..+..... +. ....+.+ .+
T Consensus 333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---~~---~~~~~~~---------------------~~ 385 (408)
T 4a11_B 333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE---TT---TKSQLNP---------------------AF 385 (408)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------
T ss_pred CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc---eE---ecccccc---------------------cc
Confidence 999999999999999999999999999999998876543211 11 1111210 23
Q ss_pred CcEEEEEeCCceEEEEECC
Q 001109 738 KETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 738 ~~~L~s~s~Dg~I~vwd~~ 756 (1155)
.....+.+.|+.+++|+..
T Consensus 386 ~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 386 EDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -------------------
T ss_pred ceeecccCccCceeecCCc
Confidence 4456678889999999853
No 60
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=2e-28 Score=285.49 Aligned_cols=201 Identities=14% Similarity=0.132 Sum_probs=161.5
Q ss_pred cCCCCCceEEEEcCCC-CEEEEEEcCCeEEEEccCCceEEEEc---CCCCCEEEEEEEc-CCcEEEEEecCCeEEEEECC
Q 001109 39 YGIPSTASILAFDHVQ-SLLAIGTQDGRIKVIGGDNIEGLLVS---PKQLAFKHLEFLQ-NQGFLVSISSGNEIQLWDLE 113 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g-~lLAsgs~DG~I~vw~~~~~~~~~~~---~~~~~V~~l~Fs~-dg~~LvS~s~Dg~I~vWDl~ 113 (1155)
.+|.+.|++++|+|+| ++||+|+.||+|+||+..+.+..... .|...|.+++|+| ++.+|++++.|++|++||+.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 6999999999999999 99999999999999998765444332 4788999999999 67899999999999999998
Q ss_pred CCceeeeecCC----CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccc
Q 001109 114 ARRITSTLPWE----SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQR 189 (1155)
Q Consensus 114 t~~~~~~l~~~----~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~ 189 (1155)
++ .+..+..+ ..|++++|+|++++|++|+.||.|++|+++. ..+. .+.
T Consensus 150 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~----~~~--------------------- 201 (383)
T 3ei3_B 150 GS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--HEIF----KEK--------------------- 201 (383)
T ss_dssp SC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--CEEE----EEE---------------------
T ss_pred CC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--CEEE----Eec---------------------
Confidence 64 44444322 6799999999999999999999999997632 1110 000
Q ss_pred cccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccC----CeEE
Q 001109 190 EKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSE----DKVV 265 (1155)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~----~~~~ 265 (1155)
+ +...+.+ ++|+|++. .+|++++.||.|++||+.+ +.++
T Consensus 202 --~-----------------------h~~~v~~-----~~~~~~~~-------~~l~s~~~d~~i~iwd~~~~~~~~~~~ 244 (383)
T 3ei3_B 202 --L-----------------------HKAKVTH-----AEFNPRCD-------WLMATSSVDATVKLWDLRNIKDKNSYI 244 (383)
T ss_dssp --C-----------------------SSSCEEE-----EEECSSCT-------TEEEEEETTSEEEEEEGGGCCSTTCEE
T ss_pred --c-----------------------CCCcEEE-----EEECCCCC-------CEEEEEeCCCEEEEEeCCCCCcccceE
Confidence 0 1233444 99999853 2799999999999999987 5555
Q ss_pred EEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEec-CCCeEEEEEcCCcEEEEEcCCCC
Q 001109 266 LVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASN-DGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~p-dG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
...+ |...|++++|+ | +|.+|++|+.||.|++||+.+..
T Consensus 245 ~~~~-------------------------------~~~~v~~~~~s-~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 245 AEMP-------------------------------HEKPVNAAYFN-PTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp EEEE-------------------------------CSSCEEEEEEC-TTTSCEEEEEESSSEEEEEETTBTT
T ss_pred EEec-------------------------------CCCceEEEEEc-CCCCCEEEEEcCCCcEEEEECCCCc
Confidence 4321 47789999999 9 99999999999999999998653
No 61
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=2.6e-28 Score=279.67 Aligned_cols=306 Identities=14% Similarity=0.117 Sum_probs=211.6
Q ss_pred eeEEEEeecccccccccccEEEEEEc---CCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccc
Q 001109 225 VEIRLLQFQKHVNSTLGFSQLLLVYA---NGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQV 301 (1155)
Q Consensus 225 v~~v~~~p~~~~~~~~~~~~llsg~~---dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1155)
|.+++|+|++. ..+++++. ||.|++||+.+++....... +|
T Consensus 21 v~~~~~~p~~~-------~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-----------------------------~~ 64 (357)
T 3i2n_A 21 VFDCKWVPCSA-------KFVTMGNFARGTGVIQLYEIQHGDLKLLREI-----------------------------EK 64 (357)
T ss_dssp EEEEEECTTSS-------EEEEEEC--CCCEEEEEEEECSSSEEEEEEE-----------------------------EE
T ss_pred eEEEEEcCCCc-------eEEEecCccCCCcEEEEEeCCCCcccceeee-----------------------------cc
Confidence 34499999853 24455555 99999999999887543111 15
Q ss_pred cCCccEEEEEecC---CCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCC
Q 001109 302 EKEISSLCWASND---GSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDC 378 (1155)
Q Consensus 302 ~~~V~sl~~s~pd---G~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~ 378 (1155)
...|++++|+ |+ |.+|++|+.||.|++||+.+..... .. ...|..+|..+.|.+... .
T Consensus 65 ~~~v~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------~~----~~~~~~~v~~~~~~~~~~-~-- 125 (357)
T 3i2n_A 65 AKPIKCGTFG-ATSLQQRYLATGDFGGNLHIWNLEAPEMPV-----------YS----VKGHKEIINAIDGIGGLG-I-- 125 (357)
T ss_dssp SSCEEEEECT-TCCTTTCCEEEEETTSCEEEECTTSCSSCS-----------EE----ECCCSSCEEEEEEESGGG-C--
T ss_pred cCcEEEEEEc-CCCCCCceEEEecCCCeEEEEeCCCCCccE-----------EE----EEecccceEEEeeccccc-c--
Confidence 7889999999 88 7999999999999999998764111 11 124556666665542100 0
Q ss_pred CceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCC
Q 001109 379 RGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPR 458 (1155)
Q Consensus 379 ~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~ 458 (1155)
+.+...+++.+.+|.+++||...
T Consensus 126 ---------------------------------------------------------s~~~~~l~~~~~d~~i~vwd~~~ 148 (357)
T 3i2n_A 126 ---------------------------------------------------------GEGAPEIVTGSRDGTVKVWDPRQ 148 (357)
T ss_dssp ---------------------------------------------------------C-CCCEEEEEETTSCEEEECTTS
T ss_pred ---------------------------------------------------------CCCccEEEEEeCCCeEEEEeCCC
Confidence 01122455666778888888652
Q ss_pred CCCcccccccccCCCcccCCcccccCC----CcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcc
Q 001109 459 FSPKKSQEKKKISSSSLQYPMLIPTIE----PHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPL 534 (1155)
Q Consensus 459 ~~~~l~~~~~~~~~~~~~~~~~~~~h~----~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l 534 (1155)
... ....+..|. ..+.++.+.
T Consensus 149 ~~~---------------~~~~~~~~~~~~~~~v~~~~~~---------------------------------------- 173 (357)
T 3i2n_A 149 KDD---------------PVANMEPVQGENKRDCWTVAFG---------------------------------------- 173 (357)
T ss_dssp CSS---------------CSEEECCCTTSCCCCEEEEEEE----------------------------------------
T ss_pred CCC---------------cceeccccCCCCCCceEEEEEE----------------------------------------
Confidence 110 011111111 122222221
Q ss_pred cCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEec---CCCeEEEEe
Q 001109 535 TGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCS---VTLNLAIGS 611 (1155)
Q Consensus 535 ~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafsp---dg~~Lasgs 611 (1155)
. +++|+++++++|+.||.|++||+..+... ... .|..+|++++|+| ++.+|++|+
T Consensus 174 ---------~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~----------~~~~~v~~~~~~~~~~~~~~l~~~~ 231 (357)
T 3i2n_A 174 ---------N-AYNQEERVVCAGYDNGDIKLFDLRNMALR--WET----------NIKNGVCSLEFDRKDISMNKLVATS 231 (357)
T ss_dssp ---------C-CCC-CCCEEEEEETTSEEEEEETTTTEEE--EEE----------ECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred ---------e-ccCCCCCEEEEEccCCeEEEEECccCcee--eec----------CCCCceEEEEcCCCCCCCCEEEEEC
Confidence 1 47789999999999999999999887632 111 4567999999999 999999999
Q ss_pred CCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEecCC
Q 001109 612 SSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGA-RLAVGFECSQVAMLDIST 690 (1155)
Q Consensus 612 ~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~-~LAsGs~Dg~V~lWDi~~ 690 (1155)
.||.|++||+........+ ....+.+|...|++++|+|+++ +||+|+.||.|+|||+..
T Consensus 232 ~dg~i~i~d~~~~~~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 232 LEGKFHVFDMRTQHPTKGF--------------------ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp STTEEEEEEEEEEETTTEE--------------------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred CCCeEEEEeCcCCCcccce--------------------eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 9999999999875322110 0123458999999999999999 899999999999999986
Q ss_pred ccEE----------------EEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEE-EEeCCceEEEE
Q 001109 691 FSVL----------------FITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLF-FMTKDAHIVVC 753 (1155)
Q Consensus 691 ~~~l----------------~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~-s~s~Dg~I~vw 753 (1155)
+... .....+.+|..+|.+++|+ |++++|+ +++.|++|+||
T Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp CSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEE
T ss_pred CcccccccCCCCccccccccceeeccccCCCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEE
Confidence 4321 1112235699999999999 8888898 89999999999
Q ss_pred ECCCCcee
Q 001109 754 DSTTGHIL 761 (1155)
Q Consensus 754 d~~tG~~l 761 (1155)
|+.+++.|
T Consensus 350 ~~~~~~~i 357 (357)
T 3i2n_A 350 IVTKLNKI 357 (357)
T ss_dssp EECC----
T ss_pred ECCCcccC
Confidence 99887653
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=6e-28 Score=278.65 Aligned_cols=208 Identities=11% Similarity=0.107 Sum_probs=165.0
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce--EEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE--GLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA 114 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~--~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t 114 (1155)
+..|.+.|++++|+|+|++||+|+.||.|+||+..+.+ .+..+ .|...|.+++|+|++.+|++++.|+.|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 34688999999999999999999999999999988764 44333 5788999999999999999999999999999999
Q ss_pred Cceeeee--c-CCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccc
Q 001109 115 RRITSTL--P-WESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREK 191 (1155)
Q Consensus 115 ~~~~~~l--~-~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~ 191 (1155)
++....+ . ....|++++|+|++++|++|+.+|.|++|+++......... .+.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~----------------------- 138 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK--HIK----------------------- 138 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE--EEC-----------------------
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee--eee-----------------------
Confidence 8765443 2 34789999999999999999999999999888754211000 000
Q ss_pred cccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEcc-----------
Q 001109 192 GKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVS----------- 260 (1155)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~----------- 260 (1155)
..+...+.+ ++|+|++ ++|++++.||.|++||+.
T Consensus 139 ----------------------~~~~~~i~~-----~~~~~~~--------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 183 (372)
T 1k8k_C 139 ----------------------KPIRSTVLS-----LDWHPNS--------VLLAAGSCDFKCRIFSAYIKEVEERPAPT 183 (372)
T ss_dssp ----------------------TTCCSCEEE-----EEECTTS--------SEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred ----------------------cccCCCeeE-----EEEcCCC--------CEEEEEcCCCCEEEEEccccccccccccc
Confidence 001233444 9999974 579999999999999964
Q ss_pred -------CCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcC
Q 001109 261 -------EDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 261 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~ 333 (1155)
.++.+... ..|...|++++|+ |+|.+|++|+.||.|++||+.
T Consensus 184 ~~~~~~~~~~~~~~~------------------------------~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 184 PWGSKMPFGELMFES------------------------------SSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp TTBSCCCTTCEEEEC------------------------------CCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGG
T ss_pred ccccccchhhheEec------------------------------CCCCCeEEEEEEC-CCCCEEEEEeCCCEEEEEECC
Confidence 34443321 1257789999999 999999999999999999998
Q ss_pred CCC
Q 001109 334 AAA 336 (1155)
Q Consensus 334 s~~ 336 (1155)
++.
T Consensus 233 ~~~ 235 (372)
T 1k8k_C 233 KKM 235 (372)
T ss_dssp GTT
T ss_pred CCc
Confidence 653
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=2e-28 Score=280.61 Aligned_cols=208 Identities=17% Similarity=0.205 Sum_probs=159.0
Q ss_pred eccCCCCCceEEEEcCCCC-EEEEEEc---CCeEEEEccCCceE--EEEcCCCCCEEEEEEEcC---CcEEEEEecCCeE
Q 001109 37 LHYGIPSTASILAFDHVQS-LLAIGTQ---DGRIKVIGGDNIEG--LLVSPKQLAFKHLEFLQN---QGFLVSISSGNEI 107 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~g~-lLAsgs~---DG~I~vw~~~~~~~--~~~~~~~~~V~~l~Fs~d---g~~LvS~s~Dg~I 107 (1155)
...||.+.|++++|+|++. ++|+|+. ||+|+||+..+.+. .....|..+|.+++|+|+ +.+|++++.|+.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 3468999999999999995 5667766 99999999877554 333457889999999998 6899999999999
Q ss_pred EEEECCCCc-eeeeecCC-CceeEEE------EecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeE
Q 001109 108 QLWDLEARR-ITSTLPWE-SNITAFS------VIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLL 179 (1155)
Q Consensus 108 ~vWDl~t~~-~~~~l~~~-~~Vtsva------~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 179 (1155)
++||+.+++ .+..+..| ..|+++. |+|++++|++|+.||.|++|++......+. .+..
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~----~~~~---------- 158 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA----NMEP---------- 158 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE----EECC----------
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce----eccc----------
Confidence 999999988 78888876 7899995 468999999999999999996654321110 0000
Q ss_pred eeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEE----EeecccccccccccEEEEEEcCCeEE
Q 001109 180 LEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRL----LQFQKHVNSTLGFSQLLLVYANGLII 255 (1155)
Q Consensus 180 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~----~~p~~~~~~~~~~~~llsg~~dG~I~ 255 (1155)
.... ....+.+ +. |+|+ + ++|++++.||.|+
T Consensus 159 --------------------------~~~~------~~~~v~~-----~~~~~~~~~~--~------~~l~~~~~d~~i~ 193 (357)
T 3i2n_A 159 --------------------------VQGE------NKRDCWT-----VAFGNAYNQE--E------RVVCAGYDNGDIK 193 (357)
T ss_dssp --------------------------CTTS------CCCCEEE-----EEEECCCC-C--C------CEEEEEETTSEEE
T ss_pred --------------------------cCCC------CCCceEE-----EEEEeccCCC--C------CEEEEEccCCeEE
Confidence 0000 0112333 66 5665 3 6799999999999
Q ss_pred EEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEec---CCCeEEEEEcCCcEEEEEc
Q 001109 256 LWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASN---DGSVLAVGYVDGDILLWNL 332 (1155)
Q Consensus 256 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~p---dG~~lasg~~DG~I~lWd~ 332 (1155)
+||+.+++...... +...|++++|+ | ++.+|++|+.||.|++||+
T Consensus 194 i~d~~~~~~~~~~~-------------------------------~~~~v~~~~~~-~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 194 LFDLRNMALRWETN-------------------------------IKNGVCSLEFD-RKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp EEETTTTEEEEEEE-------------------------------CSSCEEEEEES-CSSSSCCEEEEEESTTEEEEEEE
T ss_pred EEECccCceeeecC-------------------------------CCCceEEEEcC-CCCCCCCEEEEECCCCeEEEEeC
Confidence 99999988755421 36789999999 8 9999999999999999998
Q ss_pred CCC
Q 001109 333 RAA 335 (1155)
Q Consensus 333 ~s~ 335 (1155)
.+.
T Consensus 242 ~~~ 244 (357)
T 3i2n_A 242 RTQ 244 (357)
T ss_dssp EEE
T ss_pred cCC
Confidence 653
No 64
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=4.2e-28 Score=306.65 Aligned_cols=208 Identities=15% Similarity=0.145 Sum_probs=167.9
Q ss_pred ccCCCCCceEEEEcCCC-CEEEEEEcCCeEEEEccCCc-----eE-EEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEE
Q 001109 38 HYGIPSTASILAFDHVQ-SLLAIGTQDGRIKVIGGDNI-----EG-LLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLW 110 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g-~lLAsgs~DG~I~vw~~~~~-----~~-~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vW 110 (1155)
..||.+.|++|+|+|++ ++||+|+.||+|+||+.... .. .....|...|.+++|+|++.+|++++.|++|+||
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 36999999999999975 79999999999999987531 11 2223578899999999999999999999999999
Q ss_pred ECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccc
Q 001109 111 DLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQR 189 (1155)
Q Consensus 111 Dl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~ 189 (1155)
|+.++.++..+..| ..|++++|+|++++|++|+.||+|++|+.... .. +.+...
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~--~~----~~~~~~------------------- 512 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE--CK----YTISEG------------------- 512 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--EE----EEECSS-------------------
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC--cc----eeeccC-------------------
Confidence 99999999998877 78999999999999999999999999964321 11 011000
Q ss_pred cccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEec
Q 001109 190 EKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRG 269 (1155)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~ 269 (1155)
.. .+... |.++.|+|+... ..|++++.||.|++||+.++++.....
T Consensus 513 -------------------~~----~h~~~-----v~~~~~~~~~~~------~~l~s~s~d~~v~vwd~~~~~~~~~~~ 558 (694)
T 3dm0_A 513 -------------------GE----GHRDW-----VSCVRFSPNTLQ------PTIVSASWDKTVKVWNLSNCKLRSTLA 558 (694)
T ss_dssp -------------------TT----SCSSC-----EEEEEECSCSSS------CEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred -------------------CC----CCCCc-----EEEEEEeCCCCc------ceEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 00 01233 444999998644 579999999999999999888776421
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 270 SKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
.|...|++++|+ |||++|++|+.||.|++||+.++
T Consensus 559 ------------------------------~h~~~v~~v~~s-pdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 559 ------------------------------GHTGYVSTVAVS-PDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp ------------------------------CCSSCEEEEEEC-TTSSEEEEEETTSBCEEEETTTT
T ss_pred ------------------------------CCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCC
Confidence 157889999999 99999999999999999998754
No 65
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=8e-28 Score=280.38 Aligned_cols=167 Identities=10% Similarity=0.028 Sum_probs=119.1
Q ss_pred cCCcCc-EEEEEECCCcEEEEeCCCCCe--eeeeeeCCCcCccccCCCCCCeEEEEEec-CCCeEEEEeCCCeEEEEEec
Q 001109 547 DYLVER-LYIAGYRDGSTRIWDATYPTL--SLIHVFGSELPGIRTATESESVSALEFCS-VTLNLAIGSSSGLVWLYNLI 622 (1155)
Q Consensus 547 ~s~~~~-lLaTgs~DgtVrlWD~~~~~l--~~l~~l~~~~~~i~~~gh~~~V~~lafsp-dg~~Lasgs~dG~V~lwd~~ 622 (1155)
++|+++ +|++|+.||+|++||+..... .++..+ +|..+|++++|+| ++.+|++++.||.|++||+.
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 345555 899999999999999986321 112222 4777999999999 99999999999999999998
Q ss_pred cCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCC
Q 001109 623 KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 623 ~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
.......+...... ......... ..+ ...+.+.+++|+|||++ +|+.||.|+|||+.++.++..... ..
T Consensus 282 ~~~~~~~~~~~~~~-----~~~~~~~~~--~~~-~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~-~~ 350 (383)
T 3ei3_B 282 DWSKPDQIIIHPHR-----QFQHLTPIK--ATW-HPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD-PN 350 (383)
T ss_dssp BTTSCSEEEECCBC-----CCTTSCCCC--CEE-CSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB-TT
T ss_pred CCcccccccccccc-----ccccccceE--Eec-cCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC-CC
Confidence 76532111100000 000000000 011 12457788999999988 899999999999999988876532 23
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCC
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~t 757 (1155)
|...|..++|+ ||+++|++|+ |++|+|||+++
T Consensus 351 ~~~~~~~~~~s----------------------~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 351 AAGIISLNKFS----------------------PTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BCSCCCEEEEC----------------------TTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceEEEEEEe----------------------cCccEEEEec-CCcEEEEecCC
Confidence 56777778999 8999999997 99999999875
No 66
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-29 Score=306.53 Aligned_cols=193 Identities=12% Similarity=0.078 Sum_probs=129.3
Q ss_pred EcCCCCEEEEEEcCCeEEEEccCCceE----EE-EcCCCCCEEEEEEEcC------CcEEEEEecCCeEEEEECCCCcee
Q 001109 50 FDHVQSLLAIGTQDGRIKVIGGDNIEG----LL-VSPKQLAFKHLEFLQN------QGFLVSISSGNEIQLWDLEARRIT 118 (1155)
Q Consensus 50 fsp~g~lLAsgs~DG~I~vw~~~~~~~----~~-~~~~~~~V~~l~Fs~d------g~~LvS~s~Dg~I~vWDl~t~~~~ 118 (1155)
.+|++++||+|+.||+|+||+..+.+. .. ...+...|..|+|+|+ +++|++++.|++|+|||+.++...
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 478899999999999999999765432 11 1234678999999996 579999999999999999876422
Q ss_pred -----------eeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 119 -----------STLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 119 -----------~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
.++..| ..|++++|+|++ .|++|+.||+|++|++..... +.. .+.
T Consensus 249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~-----~~~----~~~------------- 305 (524)
T 2j04_B 249 VHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV-----PSF----YDQ------------- 305 (524)
T ss_dssp SSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS-----CSE----EEE-------------
T ss_pred cccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC-----ceE----Eee-------------
Confidence 245555 789999999864 899999999999997654210 000 000
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEE--EEeecccccccccccEEEEEEcCCeEEEEEccCCeE
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIR--LLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKV 264 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v--~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~ 264 (1155)
+ +...|.+ | +|+|++. .+|++|+.||+|+|||+++++.
T Consensus 306 -----~-----------------------H~~~V~s-----v~~~~s~~g~-------~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 306 -----V-----------------------HDSYILS-----VSTAYSDFED-------TVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp -----C-----------------------SSSCEEE-----EEEECCTTSC-------CEEEEEETTSEEEEECGGGHHH
T ss_pred -----c-----------------------ccccEEE-----EEEEcCCCCC-------eEEEEeccCCeEEEEECCCCCc
Confidence 0 2333444 7 4566532 3699999999999999988765
Q ss_pred EEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 265 VLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
+..... +. ....|.+++|+ |+|..||+|+.|++|++||+++
T Consensus 346 ~~~~~~-----~~-----------------------~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~~ 386 (524)
T 2j04_B 346 TKTTVS-----RF-----------------------RGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSRA 386 (524)
T ss_dssp HCEEEE-----EC-----------------------SCCSCCCEEEE-TTTTEEEEECSSSEEEEEETTC
T ss_pred cccccc-----cc-----------------------ccCcccceEeC-CCcCeEEEeCCCCcEEEEECcc
Confidence 432100 00 01348899999 9999999999999999999865
No 67
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=2.2e-28 Score=284.93 Aligned_cols=113 Identities=9% Similarity=0.019 Sum_probs=90.7
Q ss_pred ccCCcCcEEEEEECCC----cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEe
Q 001109 546 EDYLVERLYIAGYRDG----STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNL 621 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~Dg----tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~ 621 (1155)
+|+|+++++++++.|+ ++++||+........... .+.+|..+|++++|+|||++||+|+.||+|+|||+
T Consensus 226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK-------QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE-------EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred EEcCCCCEEEEEecCCcceeEEeecccccceecceeee-------eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC
Confidence 4556777888888887 688899876643221111 12378889999999999999999999999999999
Q ss_pred ccCccccceeeeccCCceEEEecCCCCCceeEE-eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 001109 622 IKSSNEETLNLVTETGKEVHILPGGDGPQCKAL-FSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIST 690 (1155)
Q Consensus 622 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~-l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~ 690 (1155)
.+.+. +.. +.+|.++|++|+|||||++||+||.|++|+|||+..
T Consensus 299 ~~~~~-------------------------~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 299 KDLSM-------------------------SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTTEE-------------------------EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCcE-------------------------EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 87432 233 468999999999999999999999999999999954
No 68
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=8.9e-28 Score=303.71 Aligned_cols=144 Identities=20% Similarity=0.172 Sum_probs=115.2
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNL 632 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~ 632 (1155)
++++|+.||+|++||+....+. ..+ .+|...|++++|+|++++|++|+.||.|++||+..+..
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~--~~~---------~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~------ 595 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLR--STL---------AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK------ 595 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEE--EEE---------CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE------
T ss_pred eEEEEeCCCeEEEEECCCCcEE--EEE---------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce------
Confidence 7899999999999999887632 333 27888999999999999999999999999999987532
Q ss_pred eccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccC------------
Q 001109 633 VTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSL------------ 700 (1155)
Q Consensus 633 v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~------------ 700 (1155)
+..+ .+...|++++|+|++.+|++++. +.|+|||++++.++.....-
T Consensus 596 -------------------~~~~-~~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (694)
T 3dm0_A 596 -------------------LYSL-EANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSG 654 (694)
T ss_dssp -------------------EECC-BCSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------
T ss_pred -------------------EEEe-cCCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccc
Confidence 1122 24568999999999998888775 55999999998887654320
Q ss_pred ----CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC
Q 001109 701 ----SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 701 ----~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~ 756 (1155)
..+...|.+|+|+ |||++|++|+.||+|+|||+.
T Consensus 655 ~~~~~~~~~~~~~l~~s----------------------pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 655 PAATKRKVIYCTSLNWS----------------------ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ------CCCCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred cccCCceeEEeeeEEEc----------------------CCCCEEEEEcCCCeEEEEecc
Confidence 0111247889998 899999999999999999975
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=6.6e-29 Score=295.98 Aligned_cols=206 Identities=15% Similarity=0.144 Sum_probs=159.2
Q ss_pred cCCCCCceEEEEcC-CCCEEEEEEcCCeEEEEccCCce--EEEE-cCCCCCEEEEEEEc-CCcEEEEEecCCeEEEEECC
Q 001109 39 YGIPSTASILAFDH-VQSLLAIGTQDGRIKVIGGDNIE--GLLV-SPKQLAFKHLEFLQ-NQGFLVSISSGNEIQLWDLE 113 (1155)
Q Consensus 39 ~G~~~~vs~lafsp-~g~lLAsgs~DG~I~vw~~~~~~--~~~~-~~~~~~V~~l~Fs~-dg~~LvS~s~Dg~I~vWDl~ 113 (1155)
.+|...|+||+|+| ++++||+|+.||+|+||+....+ .+.. ..|..+|.+|+|+| ++.+|++++.|++|++||++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 47888999999999 56799999999999999976543 3333 35788999999998 67899999999999999998
Q ss_pred CCceeeeecCC---CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccc
Q 001109 114 ARRITSTLPWE---SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQRE 190 (1155)
Q Consensus 114 t~~~~~~l~~~---~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~ 190 (1155)
++........+ ..+.+++|+|++.+|++|+.||+|++|+++.. .+. .+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~----~~~---------------------- 247 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELW----NLR---------------------- 247 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCC----CSB----------------------
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeE----EEe----------------------
Confidence 76544333332 46789999999999999999999999976431 110 000
Q ss_pred ccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecc
Q 001109 191 KGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGS 270 (1155)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~ 270 (1155)
+ +...|.+ ++|+|+.. ..+++|+.||.|+|||+.+.+.....
T Consensus 248 -~-----------------------h~~~v~~-----v~~~p~~~-------~~~~s~s~d~~v~iwd~~~~~~~~~~-- 289 (435)
T 4e54_B 248 -M-----------------------HKKKVTH-----VALNPCCD-------WFLATASVDQTVKIWDLRQVRGKASF-- 289 (435)
T ss_dssp -C-----------------------CSSCEEE-----EEECTTCS-------SEEEEEETTSBCCEEETTTCCSSSCC--
T ss_pred -c-----------------------ccceEEe-----eeecCCCc-------eEEEEecCcceeeEEecccccccceE--
Confidence 0 1233444 99999865 47889999999999999876532110
Q ss_pred cccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 271 KDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
. ....|...|++++|+ |||.+|++|+.||.|++||+.++.
T Consensus 290 -----~--------------------~~~~h~~~v~~~~~s-pdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 290 -----L--------------------YSLPHRHPVNAACFS-PDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp -----S--------------------BCCBCSSCEEECCBC-TTSSEEEEEESSSCEEEEESSSSS
T ss_pred -----E--------------------EeeeccccccceeEC-CCCCeeEEEcCCCEEEEEECCCCc
Confidence 0 001257889999999 999999999999999999998653
No 70
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=1.7e-28 Score=292.30 Aligned_cols=310 Identities=11% Similarity=0.028 Sum_probs=202.2
Q ss_pred eeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccC
Q 001109 224 FVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEK 303 (1155)
Q Consensus 224 ~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1155)
.|++++|+|... ++|++|+.||.|+|||+.++........ .+|..
T Consensus 121 ~V~~l~~~P~~~-------~~lasGs~dg~i~lWd~~~~~~~~~~~~----------------------------~gH~~ 165 (435)
T 4e54_B 121 RATSLAWHPTHP-------STVAVGSKGGDIMLWNFGIKDKPTFIKG----------------------------IGAGG 165 (435)
T ss_dssp CEEEEEECSSCT-------TCEEEEETTSCEEEECSSCCSCCEEECC----------------------------CSSSC
T ss_pred CEEEEEEeCCCC-------CEEEEEeCCCEEEEEECCCCCceeEEEc----------------------------cCCCC
Confidence 366699999754 5799999999999999987764332110 12588
Q ss_pred CccEEEEEec-CCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceE
Q 001109 304 EISSLCWASN-DGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQL 382 (1155)
Q Consensus 304 ~V~sl~~s~p-dG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~l 382 (1155)
.|++++|+ | ++.+|++|+.||+|++||+.+...... .....+..++
T Consensus 166 ~V~~l~f~-p~~~~~l~s~s~D~~v~iwd~~~~~~~~~--------------~~~~~~~~~~------------------ 212 (435)
T 4e54_B 166 SITGLKFN-PLNTNQFYASSMEGTTRLQDFKGNILRVF--------------ASSDTINIWF------------------ 212 (435)
T ss_dssp CCCEEEEC-SSCTTEEEEECSSSCEEEEETTSCEEEEE--------------ECCSSCSCCC------------------
T ss_pred CEEEEEEe-CCCCCEEEEEeCCCEEEEeeccCCceeEE--------------eccCCCCccE------------------
Confidence 99999999 6 789999999999999999865321000 0000000111
Q ss_pred EEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCc
Q 001109 383 FVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPK 462 (1155)
Q Consensus 383 lv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~ 462 (1155)
..+.+.+++ ..+++++.+|.|++||...
T Consensus 213 ------------------------------------------~~~~~~~~~------~~l~~g~~dg~i~~wd~~~---- 240 (435)
T 4e54_B 213 ------------------------------------------CSLDVSASS------RMVVTGDNVGNVILLNMDG---- 240 (435)
T ss_dssp ------------------------------------------CCEEEETTT------TEEEEECSSSBEEEEESSS----
T ss_pred ------------------------------------------EEEEECCCC------CEEEEEeCCCcEeeeccCc----
Confidence 112222222 2566777888999999641
Q ss_pred ccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcc
Q 001109 463 KSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQL 542 (1155)
Q Consensus 463 l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~ 542 (1155)
.....+.+|...|++++|
T Consensus 241 -------------~~~~~~~~h~~~v~~v~~------------------------------------------------- 258 (435)
T 4e54_B 241 -------------KELWNLRMHKKKVTHVAL------------------------------------------------- 258 (435)
T ss_dssp -------------CBCCCSBCCSSCEEEEEE-------------------------------------------------
T ss_pred -------------ceeEEEecccceEEeeee-------------------------------------------------
Confidence 112234456666666655
Q ss_pred cccccCCcC-cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEe
Q 001109 543 HDAEDYLVE-RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNL 621 (1155)
Q Consensus 543 ~l~~~s~~~-~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~ 621 (1155)
+|++ .++++|+.||+|++||+....... .+ ....+|..+|++|+|+|+|.+|++|+.||.|+||++
T Consensus 259 -----~p~~~~~~~s~s~d~~v~iwd~~~~~~~~--~~------~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 259 -----NPCCDWFLATASVDQTVKIWDLRQVRGKA--SF------LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp -----CTTCSSEEEEEETTSBCCEEETTTCCSSS--CC------SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred -----cCCCceEEEEecCcceeeEEecccccccc--eE------EEeeeccccccceeECCCCCeeEEEcCCCEEEEEEC
Confidence 3332 378999999999999997764211 11 112378889999999999999999999999999999
Q ss_pred ccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEecCCccEEEEeccC
Q 001109 622 IKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVG-FECSQVAMLDISTFSVLFITDSL 700 (1155)
Q Consensus 622 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsG-s~Dg~V~lWDi~~~~~l~~~~~~ 700 (1155)
........+..... ............-...+.+..+++++++..++++ ..++.|++||+.++.++... .
T Consensus 326 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l--~ 395 (435)
T 4e54_B 326 SQWDCPLGLIPHPH--------RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL--Y 395 (435)
T ss_dssp SSSSSEEEECCCCC--------CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE--C
T ss_pred CCCccceEEecccc--------cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE--e
Confidence 87543211100000 0000000000011234456667777777655444 34568999999999988765 3
Q ss_pred CCCCCCeeEE-EEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCcee
Q 001109 701 SNSNSPVLYL-AVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHIL 761 (1155)
Q Consensus 701 ~~h~~~V~sl-afs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l 761 (1155)
.+|...|.++ +|+ |||++|++|+ |++|+|||+++|+..
T Consensus 396 ~~~~~~v~s~~~fs----------------------pdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 396 DPESSGISSLNEFN----------------------PMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CSSCCCCCCEEEEC----------------------TTSSCEEEEC-SSEEEECCCC-----
T ss_pred CCCCCcEEEEEEEC----------------------CCCCEEEEEc-CCcEEEEECCcCeee
Confidence 5789999998 688 8999999886 889999999998753
No 71
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-29 Score=302.19 Aligned_cols=196 Identities=10% Similarity=0.028 Sum_probs=142.2
Q ss_pred eccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc
Q 001109 37 LHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR 116 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~ 116 (1155)
.|......|.+|+|+|||+++|+|+.|++|+ +....+.+ -.|...|.+++|+|+| .++++++|+.+...
T Consensus 10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~ 78 (588)
T 2j04_A 10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI--NCNSKNLFHVKEFPLE-------FENKLDFELAQQNG 78 (588)
T ss_dssp CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC--SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC
T ss_pred cHhHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee--cCCCccEEEEEECCCC-------CcceEEEEeCCCce
Confidence 3455667899999999999999999999999 64444333 3567899999999997 56666666654333
Q ss_pred eeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccc
Q 001109 117 ITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAF 196 (1155)
Q Consensus 117 ~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~ 196 (1155)
..++.....|++++|+|+|.+|++++.||+|++|+.+. .+.. +.
T Consensus 79 -~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~----l~---------------------------- 122 (588)
T 2j04_A 79 -LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTN----LD---------------------------- 122 (588)
T ss_dssp -SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEE----CC----------------------------
T ss_pred -EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeee----cc----------------------------
Confidence 33444468899999999999999999999999996221 1110 00
Q ss_pred ccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeE-------EEEec
Q 001109 197 NASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKV-------VLVRG 269 (1155)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~-------~~~~~ 269 (1155)
++.++....|.+++|+|++ ++|++|+.||+|+|||+.++.+ +....
T Consensus 123 -------------------~~~~~~~~sv~svafSPDG--------~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~ 175 (588)
T 2j04_A 123 -------------------SKGNLSSRTYHCFEWNPIE--------SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIR 175 (588)
T ss_dssp -------------------CSSCSTTTCEEEEEECSSS--------SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEE
T ss_pred -------------------CCCccccccEEEEEEcCCC--------CEEEEEcCCCEEEEEECCCCccccccceeeeeee
Confidence 0111111124459999984 5799999999999999998752 22210
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 270 SKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
.+ ..+|...|.+++|+ ||| +|+++.|++|++||+.+.
T Consensus 176 -----~~---------------------~~gh~~~V~sVawS-Pdg--Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 176 -----LS---------------------DAGSKDWVTHIVWY-EDV--LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp -----CS---------------------CTTCCCCEEEEEEE-TTE--EEEEETTCCEEEECCCSS
T ss_pred -----cc---------------------cccccccEEEEEEc-CCc--EEEEeCCCeEEEEECCCC
Confidence 00 01247899999999 999 889999999999998653
No 72
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=6.1e-28 Score=278.58 Aligned_cols=293 Identities=15% Similarity=0.120 Sum_probs=206.8
Q ss_pred EEEEeecccccccccccEEEEEEcCCeEEEEEccCCe--EEEEecccccccccccccCCCCCCCCCCcccccccccccCC
Q 001109 227 IRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDK--VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKE 304 (1155)
Q Consensus 227 ~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1155)
+++|+|++ ++|++++.||.|++||+.+++ .+... . .|...
T Consensus 13 ~~~~s~~~--------~~l~~~~~d~~v~i~~~~~~~~~~~~~~-------~-----------------------~h~~~ 54 (372)
T 1k8k_C 13 CHAWNKDR--------TQIAICPNNHEVHIYEKSGNKWVQVHEL-------K-----------------------EHNGQ 54 (372)
T ss_dssp EEEECTTS--------SEEEEECSSSEEEEEEEETTEEEEEEEE-------E-----------------------CCSSC
T ss_pred EEEECCCC--------CEEEEEeCCCEEEEEeCCCCcEEeeeee-------c-----------------------CCCCc
Confidence 39999974 579999999999999999886 44331 1 14778
Q ss_pred ccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEE
Q 001109 305 ISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFV 384 (1155)
Q Consensus 305 V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv 384 (1155)
|++++|+ |+|++|++|+.||.|++||+.++..... .....+..+|..+.|++ ++.
T Consensus 55 v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~v~~~~~~~-------~~~--- 109 (372)
T 1k8k_C 55 VTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRTWKPT--------------LVILRINRAARCVRWAP-------NEK--- 109 (372)
T ss_dssp EEEEEEE-TTTTEEEEEETTSCEEEEEEETTEEEEE--------------EECCCCSSCEEEEEECT-------TSS---
T ss_pred ccEEEEe-CCCCEEEEEcCCCeEEEEECCCCeeeee--------------EEeecCCCceeEEEECC-------CCC---
Confidence 9999999 9999999999999999999976532110 00112344555555542 112
Q ss_pred ecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCccc
Q 001109 385 FGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKS 464 (1155)
Q Consensus 385 ~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~ 464 (1155)
.+++.+.+|.+++||......
T Consensus 110 --------------------------------------------------------~l~~~~~d~~v~i~d~~~~~~--- 130 (372)
T 1k8k_C 110 --------------------------------------------------------KFAVGSGSRVISICYFEQEND--- 130 (372)
T ss_dssp --------------------------------------------------------EEEEEETTSSEEEEEEETTTT---
T ss_pred --------------------------------------------------------EEEEEeCCCEEEEEEecCCCc---
Confidence 344445566777777431100
Q ss_pred ccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccc
Q 001109 465 QEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHD 544 (1155)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l 544 (1155)
..........|...|+ ++
T Consensus 131 ---------~~~~~~~~~~~~~~i~-----------------------------------------------------~~ 148 (372)
T 1k8k_C 131 ---------WWVCKHIKKPIRSTVL-----------------------------------------------------SL 148 (372)
T ss_dssp ---------EEEEEEECTTCCSCEE-----------------------------------------------------EE
T ss_pred ---------ceeeeeeecccCCCee-----------------------------------------------------EE
Confidence 0000000011222222 23
Q ss_pred cccCCcCcEEEEEECCCcEEEEeCCCCCe----------------eeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEE
Q 001109 545 AEDYLVERLYIAGYRDGSTRIWDATYPTL----------------SLIHVFGSELPGIRTATESESVSALEFCSVTLNLA 608 (1155)
Q Consensus 545 ~~~s~~~~lLaTgs~DgtVrlWD~~~~~l----------------~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~La 608 (1155)
+++|++++|++|+.||+|++||+..... ..+.. +.+|..+|++++|+|++.+|+
T Consensus 149 -~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 149 -DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE---------SSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp -EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE---------CCCCSSCEEEEEECSSSSEEE
T ss_pred -EEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEe---------cCCCCCeEEEEEECCCCCEEE
Confidence 6678888999999999999999753210 11122 236888999999999999999
Q ss_pred EEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 001109 609 IGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDI 688 (1155)
Q Consensus 609 sgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi 688 (1155)
+|+.||.|++||+.... ++..+..|..+|++++|+|+|++||+| .||.|++||+
T Consensus 219 ~~~~d~~i~i~d~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKM-------------------------AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp EEETTTEEEEEEGGGTT-------------------------EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred EEeCCCEEEEEECCCCc-------------------------eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 99999999999998743 235667899999999999999999988 8999999999
Q ss_pred CC--ccEEEE------------------------------------eccCCCCCCCeeEEEEeecCCCCccccCCCCCCC
Q 001109 689 ST--FSVLFI------------------------------------TDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDI 730 (1155)
Q Consensus 689 ~~--~~~l~~------------------------------------~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~ 730 (1155)
.+ +..... .....+|..+|.+++|.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---------------- 336 (372)
T 1k8k_C 273 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS---------------- 336 (372)
T ss_dssp ETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE----------------
T ss_pred cCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEec----------------
Confidence 88 421100 112248999999999763
Q ss_pred CCCCCCCC---cEEEEEeCCceEEEEECCCCce
Q 001109 731 NSSNDTKK---ETLFFMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 731 ~~~~~pd~---~~L~s~s~Dg~I~vwd~~tG~~ 760 (1155)
++| ++|++++.||+|++||+.+++.
T Consensus 337 -----~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 337 -----GGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp -----STTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred -----CCCcceeeEEEecCCCceEEEEecChhH
Confidence 566 9999999999999999877654
No 73
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=1.3e-27 Score=278.91 Aligned_cols=158 Identities=20% Similarity=0.199 Sum_probs=129.7
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCC---CCCeEEEEEecCCCeEEEEeCC---CeEEEE
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATE---SESVSALEFCSVTLNLAIGSSS---GLVWLY 619 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh---~~~V~~lafspdg~~Lasgs~d---G~V~lw 619 (1155)
+++|++ ++++|+.||.|++||+..+.. +..+.. ..+| ..+|++++|+|++++|++|+.| |.|++|
T Consensus 193 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~--~~~~~~------~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 193 DISERG-LIATGFNNGTVQISELSTLRP--LYNFES------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp EECTTS-EEEEECTTSEEEEEETTTTEE--EEEEEC------CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred EECCCc-eEEEEeCCCcEEEEECCCCce--eEEEec------cccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence 788999 999999999999999987752 333321 0126 7899999999999999999999 999999
Q ss_pred EeccCccccceeeeccCCceEEEecCCCCCceeEEeec-------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001109 620 NLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSV-------------LNSPICNLKFSNFGARLAVGFECSQVAML 686 (1155)
Q Consensus 620 d~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~-------------h~~~VtslafSpdg~~LAsGs~Dg~V~lW 686 (1155)
|+..... ...+.+ |...|++++|+|++++||+|+.||.|+||
T Consensus 264 d~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 264 ETEFGER-------------------------IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp ETTTCCE-------------------------EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred ECCCCcc-------------------------cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9987532 123344 89999999999999999999999999999
Q ss_pred ecCCccEEEEeccC---CCC---------------CCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCC----------
Q 001109 687 DISTFSVLFITDSL---SNS---------------NSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKK---------- 738 (1155)
Q Consensus 687 Di~~~~~l~~~~~~---~~h---------------~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~---------- 738 (1155)
|+.++..+...... .+| ..+|.+++|+ |++
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~----------------------~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL----------------------KKGWRSGMGADLN 376 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE----------------------CTTTSBSTTCTTS
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEec----------------------ccccccccccccc
Confidence 99999888765410 046 9999999999 666
Q ss_pred cEEEEEeCCceEEEEECCCCc
Q 001109 739 ETLFFMTKDAHIVVCDSTTGH 759 (1155)
Q Consensus 739 ~~L~s~s~Dg~I~vwd~~tG~ 759 (1155)
++|++++.|+.|++||+.+|+
T Consensus 377 ~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CEEEEEETTTEEEEEEEEC--
T ss_pred ceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999998874
No 74
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1.3e-27 Score=274.52 Aligned_cols=133 Identities=13% Similarity=0.101 Sum_probs=102.4
Q ss_pred CCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcC
Q 001109 590 TESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSN 669 (1155)
Q Consensus 590 gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp 669 (1155)
+|...|++++|+ +.+|++++.||.|++||+......... .... .....+...+..|...|++++|+|
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~v~~~~~s~ 295 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDK--IKPS---------ESNVTILGRFDYSQCDIWYMRFSM 295 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGG--CCTT---------CCCEEEEEEEECSSCCSSCCCCEE
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccc--cccC---------CcchheeccccccCCcEEEEEEcC
Confidence 588899999999 779999999999999999875431110 0000 011123456788999999999999
Q ss_pred C--CCEEEEEeCCCcEEEEecCCccEEE-EeccCCCC--CCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEE
Q 001109 670 F--GARLAVGFECSQVAMLDISTFSVLF-ITDSLSNS--NSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFM 744 (1155)
Q Consensus 670 d--g~~LAsGs~Dg~V~lWDi~~~~~l~-~~~~~~~h--~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~ 744 (1155)
+ |++||+|+.||.|+|||+.++..+. ....+.+| ..+|.+++|+ |++++|+++
T Consensus 296 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~ 353 (366)
T 3k26_A 296 DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAV 353 (366)
T ss_dssp CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEE
T ss_pred CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeC----------------------CCCCeEEEE
Confidence 9 9999999999999999999865321 00112345 7999999999 899999999
Q ss_pred eCCceEEEEECCC
Q 001109 745 TKDAHIVVCDSTT 757 (1155)
Q Consensus 745 s~Dg~I~vwd~~t 757 (1155)
+.||.|++||+.+
T Consensus 354 ~~dg~i~iwd~~~ 366 (366)
T 3k26_A 354 CDDASIWRWDRLR 366 (366)
T ss_dssp ETTSEEEEEEC--
T ss_pred eCCCEEEEEEecC
Confidence 9999999999864
No 75
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-26 Score=259.58 Aligned_cols=283 Identities=13% Similarity=0.128 Sum_probs=208.2
Q ss_pred eeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCC
Q 001109 225 VEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKE 304 (1155)
Q Consensus 225 v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1155)
|.+++| |++ ++|++|+.||.|++||+.+++...... .|...
T Consensus 21 v~~~~~-~~~--------~~l~s~~~dg~v~vw~~~~~~~~~~~~------------------------------~~~~~ 61 (313)
T 3odt_A 21 VRDVVA-VDD--------SKVASVSRDGTVRLWSKDDQWLGTVVY------------------------------TGQGF 61 (313)
T ss_dssp EEEEEE-EET--------TEEEEEETTSEEEEEEESSSEEEEEEE------------------------------ECSSC
T ss_pred cEEEEe-cCC--------CEEEEEEcCCcEEEEECCCCEEEEEee------------------------------cCCcc
Confidence 344999 763 579999999999999998887765421 14778
Q ss_pred ccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEE
Q 001109 305 ISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFV 384 (1155)
Q Consensus 305 V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv 384 (1155)
|.+++|+ |++++|++|+.||.|++|++........ +.. ...|..+|..+.|.
T Consensus 62 v~~~~~~-~~~~~l~~~~~dg~i~~~~~~~~~~~~~---------~~~----~~~~~~~i~~~~~~-------------- 113 (313)
T 3odt_A 62 LNSVCYD-SEKELLLFGGKDTMINGVPLFATSGEDP---------LYT----LIGHQGNVCSLSFQ-------------- 113 (313)
T ss_dssp EEEEEEE-TTTTEEEEEETTSCEEEEETTCCTTSCC----------CE----ECCCSSCEEEEEEE--------------
T ss_pred EEEEEEC-CCCCEEEEecCCCeEEEEEeeecCCCCc---------ccc----hhhcccCEEEEEec--------------
Confidence 9999999 9999999999999999999976432110 100 11233344433331
Q ss_pred ecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCccc
Q 001109 385 FGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKS 464 (1155)
Q Consensus 385 ~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~ 464 (1155)
...+++.+.+|.+++||..
T Consensus 114 ------------------------------------------------------~~~l~~~~~d~~i~~~d~~------- 132 (313)
T 3odt_A 114 ------------------------------------------------------DGVVISGSWDKTAKVWKEG------- 132 (313)
T ss_dssp ------------------------------------------------------TTEEEEEETTSEEEEEETT-------
T ss_pred ------------------------------------------------------CCEEEEEeCCCCEEEEcCC-------
Confidence 1145566677888888822
Q ss_pred ccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccc
Q 001109 465 QEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHD 544 (1155)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l 544 (1155)
.....+..|...+.++.+.
T Consensus 133 -----------~~~~~~~~~~~~v~~~~~~-------------------------------------------------- 151 (313)
T 3odt_A 133 -----------SLVYNLQAHNASVWDAKVV-------------------------------------------------- 151 (313)
T ss_dssp -----------EEEEEEECCSSCEEEEEEE--------------------------------------------------
T ss_pred -----------cEEEecccCCCceeEEEEc--------------------------------------------------
Confidence 1112223344445444332
Q ss_pred cccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccC
Q 001109 545 AEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 545 ~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~ 624 (1155)
.++++++++|+.||.|++||.... +..+. ..|...|.+++|+|++. +++|+.||.|++||+...
T Consensus 152 ---~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~--------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 152 ---SFSENKFLTASADKTIKLWQNDKV----IKTFS--------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp ---ETTTTEEEEEETTSCEEEEETTEE----EEEEC--------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred ---cCCCCEEEEEECCCCEEEEecCce----EEEEe--------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence 125668999999999999994321 22332 13677999999999998 999999999999999864
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSN 704 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~ 704 (1155)
. +...+.+|.+.|++++|+|+| .|++|+.||.|++||+.++..+.... .|.
T Consensus 216 ~-------------------------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~ 266 (313)
T 3odt_A 216 D-------------------------VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT---LPA 266 (313)
T ss_dssp C-------------------------EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE---CSS
T ss_pred h-------------------------hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe---ccC
Confidence 3 234667899999999999999 69999999999999999998877654 488
Q ss_pred CCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 705 SPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 705 ~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
.+|.+++|+ |+++ +++++.|+.|++||+.+++.+...
T Consensus 267 ~~i~~~~~~----------------------~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 267 ISIWSVDCM----------------------SNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp SCEEEEEEC----------------------TTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred ceEEEEEEc----------------------cCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 999999998 7887 667999999999999998876655
No 76
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=1.1e-26 Score=273.57 Aligned_cols=223 Identities=15% Similarity=0.203 Sum_probs=173.2
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeee
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTL 121 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l 121 (1155)
..+...+|+|++++||+|+.||.|+||+..+.+..... .|...|.+++|+|++.+|++++.|++|++||+.+++.+..+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 34555689999999999999999999999888877764 67889999999999999999999999999999999999988
Q ss_pred cCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccce
Q 001109 122 PWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASL 200 (1155)
Q Consensus 122 ~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 200 (1155)
..| +.|++++|+|++++|++|+.||+|++|++.. ++... .+..+.. ....+..++|.|.....+.
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~~-~~~~~~~--~~~~v~~~~~~~~~~~~~~--------- 243 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT--GTTIH-TFNRKEN--PHDGVNSIALFVGTDRQLH--------- 243 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT--TEEEE-EECBTTB--TTCCEEEEEEEECCCSSCG---------
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC--CceeE-EeecCCC--CCCCccEEEEecCCcceee---------
Confidence 876 7899999999999999999999999996654 33321 1111100 0012235566655422110
Q ss_pred eeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccc
Q 001109 201 LFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIV 280 (1155)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~ 280 (1155)
..+...+.. ++|+|++ ++|++|+.||.|++||+.+++.+.....
T Consensus 244 -------------~~~~~~v~~-----~~~s~~~--------~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------- 287 (420)
T 3vl1_A 244 -------------EISTSKKNN-----LEFGTYG--------KYVIAGHVSGVITVHNVFSKEQTIQLPS---------- 287 (420)
T ss_dssp -------------GGCCCCCCT-----TCSSCTT--------EEEEEEETTSCEEEEETTTCCEEEEECC----------
T ss_pred -------------ecccCcccc-----eEEcCCC--------CEEEEEcCCCeEEEEECCCCceeEEccc----------
Confidence 011234445 8899974 5799999999999999998887654210
Q ss_pred cCCCCCCCCCCcccccccccccCCccEEEEEecCCC-eEEEEEcCCcEEEEEcCCC
Q 001109 281 DDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGS-VLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~-~lasg~~DG~I~lWd~~s~ 335 (1155)
.|...|++++|+ |+|. +|++|+.||.|++||+.++
T Consensus 288 -------------------~~~~~v~~~~~~-~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 288 -------------------KFTCSCNSLTVD-GNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp -------------------TTSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETTCT
T ss_pred -------------------ccCCCceeEEEe-CCCCCEEEEEeCCCeEEEEEcCCC
Confidence 146789999999 9999 9999999999999998754
No 77
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-26 Score=258.49 Aligned_cols=284 Identities=11% Similarity=0.114 Sum_probs=214.9
Q ss_pred CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCc-
Q 001109 81 PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEG- 158 (1155)
Q Consensus 81 ~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~- 158 (1155)
.|..+|.+++| +++.+|++++.||.|++||+.++.....+..+ ..|++++|+|+++++++|+.+|.|++|++.....
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 94 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE 94 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC
Confidence 57889999999 88899999999999999999999888777655 8899999999999999999999999997654321
Q ss_pred eeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccc
Q 001109 159 KLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNS 238 (1155)
Q Consensus 159 ~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~ 238 (1155)
+.. ..+. + +...+.+ +.|+ +
T Consensus 95 ~~~---~~~~-----------------------~-----------------------~~~~i~~-----~~~~----~-- 114 (313)
T 3odt_A 95 DPL---YTLI-----------------------G-----------------------HQGNVCS-----LSFQ----D-- 114 (313)
T ss_dssp CC----CEEC-----------------------C-----------------------CSSCEEE-----EEEE----T--
T ss_pred Ccc---cchh-----------------------h-----------------------cccCEEE-----EEec----C--
Confidence 000 0000 0 1233333 7773 2
Q ss_pred cccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeE
Q 001109 239 TLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVL 318 (1155)
Q Consensus 239 ~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~l 318 (1155)
+.+++++.||.|++|| .++.+.... .|...|.+++|.++++..|
T Consensus 115 ----~~l~~~~~d~~i~~~d--~~~~~~~~~------------------------------~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 115 ----GVVISGSWDKTAKVWK--EGSLVYNLQ------------------------------AHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp ----TEEEEEETTSEEEEEE--TTEEEEEEE------------------------------CCSSCEEEEEEEETTTTEE
T ss_pred ----CEEEEEeCCCCEEEEc--CCcEEEecc------------------------------cCCCceeEEEEccCCCCEE
Confidence 5799999999999999 455444311 1477899999994499999
Q ss_pred EEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEE
Q 001109 319 AVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTM 398 (1155)
Q Consensus 319 asg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltv 398 (1155)
++++.||.|++||.... +.
T Consensus 159 ~~~~~d~~i~i~d~~~~------------------------------------------------------------~~- 177 (313)
T 3odt_A 159 LTASADKTIKLWQNDKV------------------------------------------------------------IK- 177 (313)
T ss_dssp EEEETTSCEEEEETTEE------------------------------------------------------------EE-
T ss_pred EEEECCCCEEEEecCce------------------------------------------------------------EE-
Confidence 99999999999983210 00
Q ss_pred EEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCC
Q 001109 399 LYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYP 478 (1155)
Q Consensus 399 l~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~ 478 (1155)
.+..
T Consensus 178 ------------------------------------------------------~~~~---------------------- 181 (313)
T 3odt_A 178 ------------------------------------------------------TFSG---------------------- 181 (313)
T ss_dssp ------------------------------------------------------EECS----------------------
T ss_pred ------------------------------------------------------EEec----------------------
Confidence 0000
Q ss_pred cccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEE
Q 001109 479 MLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGY 558 (1155)
Q Consensus 479 ~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs 558 (1155)
.|...|+++ +++|++. +++|+
T Consensus 182 ----~~~~~i~~~------------------------------------------------------~~~~~~~-~~~~~ 202 (313)
T 3odt_A 182 ----IHNDVVRHL------------------------------------------------------AVVDDGH-FISCS 202 (313)
T ss_dssp ----SCSSCEEEE------------------------------------------------------EEEETTE-EEEEE
T ss_pred ----cCcccEEEE------------------------------------------------------EEcCCCe-EEEcc
Confidence 011223333 2334555 88999
Q ss_pred CCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCc
Q 001109 559 RDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGK 638 (1155)
Q Consensus 559 ~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~ 638 (1155)
.||.|++||+..+.. +..+. +|..+|++++|+|++ .|++|+.||.|++||+..+..
T Consensus 203 ~dg~i~i~d~~~~~~--~~~~~---------~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~------------ 258 (313)
T 3odt_A 203 NDGLIKLVDMHTGDV--LRTYE---------GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL------------ 258 (313)
T ss_dssp TTSEEEEEETTTCCE--EEEEE---------CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE------------
T ss_pred CCCeEEEEECCchhh--hhhhh---------cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce------------
Confidence 999999999988763 33332 677899999999999 689999999999999987532
Q ss_pred eEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEE
Q 001109 639 EVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLF 695 (1155)
Q Consensus 639 ~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~ 695 (1155)
...+..|..+|++++|+|+|+ +++|+.||.|++||+.++..+.
T Consensus 259 -------------~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 259 -------------KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp -------------EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred -------------eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 345678999999999999998 6679999999999999877654
No 78
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.8e-27 Score=276.50 Aligned_cols=279 Identities=16% Similarity=0.217 Sum_probs=200.4
Q ss_pred EEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEc
Q 001109 244 QLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYV 323 (1155)
Q Consensus 244 ~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~ 323 (1155)
.+++++.||.|++||+.+++....... .|...|++++|+ |+|++|++|+.
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~-----------------------------~~~~~v~~v~~s-~~~~~l~~~~~ 154 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVSALAET-----------------------------DESTYVASVKWS-HDGSFLSVGLG 154 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEEC-----------------------------CTTCCEEEEEEC-TTSSEEEEEET
T ss_pred CEEEEECCCeEEEeeCCCCcEeEeeec-----------------------------CCCCCEEEEEEC-CCCCEEEEECC
Confidence 488999999999999999987765211 146789999999 99999999999
Q ss_pred CCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccC
Q 001109 324 DGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNW 403 (1155)
Q Consensus 324 DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~ 403 (1155)
||.|++||+.++..... ...|..+|..+.|..
T Consensus 155 dg~i~iwd~~~~~~~~~----------------~~~~~~~v~~~~~~~-------------------------------- 186 (401)
T 4aez_A 155 NGLVDIYDVESQTKLRT----------------MAGHQARVGCLSWNR-------------------------------- 186 (401)
T ss_dssp TSCEEEEETTTCCEEEE----------------ECCCSSCEEEEEEET--------------------------------
T ss_pred CCeEEEEECcCCeEEEE----------------ecCCCCceEEEEECC--------------------------------
Confidence 99999999976532111 112344444444311
Q ss_pred CcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCccccc
Q 001109 404 SSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPT 483 (1155)
Q Consensus 404 ~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (1155)
..+++.+.+|.+++||.... ......+..
T Consensus 187 ------------------------------------~~l~~~~~dg~i~i~d~~~~---------------~~~~~~~~~ 215 (401)
T 4aez_A 187 ------------------------------------HVLSSGSRSGAIHHHDVRIA---------------NHQIGTLQG 215 (401)
T ss_dssp ------------------------------------TEEEEEETTSEEEEEETTSS---------------SCEEEEEEC
T ss_pred ------------------------------------CEEEEEcCCCCEEEEecccC---------------cceeeEEcC
Confidence 13455566788888886410 000111222
Q ss_pred CCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcE
Q 001109 484 IEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGST 563 (1155)
Q Consensus 484 h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtV 563 (1155)
|...|++ + +++|++++|++|+.||+|
T Consensus 216 ~~~~v~~-----------------------------------------------------~-~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 216 HSSEVCG-----------------------------------------------------L-AWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp CSSCEEE-----------------------------------------------------E-EECTTSSEEEEEETTSCE
T ss_pred CCCCeeE-----------------------------------------------------E-EEcCCCCEEEEEeCCCeE
Confidence 3322222 2 567788899999999999
Q ss_pred EEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCC-eEEEEe--CCCeEEEEEeccCccccceeeeccCCceE
Q 001109 564 RIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTL-NLAIGS--SSGLVWLYNLIKSSNEETLNLVTETGKEV 640 (1155)
Q Consensus 564 rlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~-~Lasgs--~dG~V~lwd~~~~~~~~~~~~v~~~~~~~ 640 (1155)
++||+..+.. +..+. +|..+|.+++|+|++. ++++|+ .||.|++||+..+..
T Consensus 242 ~iwd~~~~~~--~~~~~---------~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-------------- 296 (401)
T 4aez_A 242 QIWDARSSIP--KFTKT---------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-------------- 296 (401)
T ss_dssp EEEETTCSSE--EEEEC---------CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--------------
T ss_pred EEccCCCCCc--cEEec---------CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--------------
Confidence 9999988763 23332 6778999999999875 555554 799999999987432
Q ss_pred EEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEE--EeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCC
Q 001109 641 HILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAV--GFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDT 718 (1155)
Q Consensus 641 ~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAs--Gs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~ 718 (1155)
...+ .|...|++++|+|+|++|++ |+.||.|+|||+.++....... +.+|..+|.+++|+
T Consensus 297 -----------~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~-~~~h~~~v~~~~~s----- 358 (401)
T 4aez_A 297 -----------VNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD-IPAHDTRVLYSALS----- 358 (401)
T ss_dssp -----------EEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE-EECCSSCCCEEEEC-----
T ss_pred -----------EEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE-ecCCCCCEEEEEEC-----
Confidence 1223 36778999999999999999 6699999999999876654432 35799999999999
Q ss_pred CccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeee
Q 001109 719 SNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 719 ~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~ 765 (1155)
||+++|++++.||+|++||+.+|+.+....
T Consensus 359 -----------------~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 359 -----------------PDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp -----------------TTSSEEEEECTTSEEEEEECCC--------
T ss_pred -----------------CCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 899999999999999999999999887663
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=8.4e-27 Score=274.39 Aligned_cols=298 Identities=14% Similarity=0.126 Sum_probs=211.0
Q ss_pred Ccceeec-cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEE--EcCCCCCEEEEEEEcCCcEEEEEecCCeEE
Q 001109 32 DPRVTLH-YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLL--VSPKQLAFKHLEFLQNQGFLVSISSGNEIQ 108 (1155)
Q Consensus 32 ~~~~~~~-~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~--~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~ 108 (1155)
.+...+. .||...+.+.++++++..+++++.||.|+||+..+.+... ...+...|.+++|+|++.+|++++.||.|+
T Consensus 80 ~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 80 TPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVD 159 (401)
T ss_dssp SCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEE
Confidence 3444443 4777776555555555667888899999999988766543 334678999999999999999999999999
Q ss_pred EEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccc
Q 001109 109 LWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQ 188 (1155)
Q Consensus 109 vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~ 188 (1155)
+||+.+++.+.++..+
T Consensus 160 iwd~~~~~~~~~~~~~---------------------------------------------------------------- 175 (401)
T 4aez_A 160 IYDVESQTKLRTMAGH---------------------------------------------------------------- 175 (401)
T ss_dssp EEETTTCCEEEEECCC----------------------------------------------------------------
T ss_pred EEECcCCeEEEEecCC----------------------------------------------------------------
Confidence 9999887665444322
Q ss_pred ccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccC-CeEEEE
Q 001109 189 REKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSE-DKVVLV 267 (1155)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~-~~~~~~ 267 (1155)
...+.+ +.|++ +.+++++.||.|++||+.. +..+..
T Consensus 176 ----------------------------~~~v~~-----~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~ 212 (401)
T 4aez_A 176 ----------------------------QARVGC-----LSWNR----------HVLSSGSRSGAIHHHDVRIANHQIGT 212 (401)
T ss_dssp ----------------------------SSCEEE-----EEEET----------TEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred ----------------------------CCceEE-----EEECC----------CEEEEEcCCCCEEEEecccCcceeeE
Confidence 111112 55532 4588888888888888873 333332
Q ss_pred ecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCC
Q 001109 268 RGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSS 347 (1155)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~ 347 (1155)
. . .|...|++++|+ |+|.+|++|+.||.|++||+.+...
T Consensus 213 ~-------~-----------------------~~~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~---------- 251 (401)
T 4aez_A 213 L-------Q-----------------------GHSSEVCGLAWR-SDGLQLASGGNDNVVQIWDARSSIP---------- 251 (401)
T ss_dssp E-------E-----------------------CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTCSSE----------
T ss_pred E-------c-----------------------CCCCCeeEEEEc-CCCCEEEEEeCCCeEEEccCCCCCc----------
Confidence 1 1 147789999999 9999999999999999999864310
Q ss_pred CCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEE
Q 001109 348 TDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDM 427 (1155)
Q Consensus 348 ~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~ 427 (1155)
+..+
T Consensus 252 ----------------~~~~------------------------------------------------------------ 255 (401)
T 4aez_A 252 ----------------KFTK------------------------------------------------------------ 255 (401)
T ss_dssp ----------------EEEE------------------------------------------------------------
T ss_pred ----------------cEEe------------------------------------------------------------
Confidence 0000
Q ss_pred EEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHH
Q 001109 428 VLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELS 507 (1155)
Q Consensus 428 ~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~ 507 (1155)
..|...|+++++
T Consensus 256 ------------------------------------------------------~~~~~~v~~~~~-------------- 267 (401)
T 4aez_A 256 ------------------------------------------------------TNHNAAVKAVAW-------------- 267 (401)
T ss_dssp ------------------------------------------------------CCCSSCCCEEEE--------------
T ss_pred ------------------------------------------------------cCCcceEEEEEE--------------
Confidence 002223344433
Q ss_pred HHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCc-CcEEEEEE--CCCcEEEEeCCCCCeeeeeeeCCCcC
Q 001109 508 KTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLV-ERLYIAGY--RDGSTRIWDATYPTLSLIHVFGSELP 584 (1155)
Q Consensus 508 ~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~-~~lLaTgs--~DgtVrlWD~~~~~l~~l~~l~~~~~ 584 (1155)
+|+ ..++++|+ .||+|++||+..+.. +..+.
T Consensus 268 ----------------------------------------~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--~~~~~---- 301 (401)
T 4aez_A 268 ----------------------------------------CPWQSNLLATGGGTMDKQIHFWNAATGAR--VNTVD---- 301 (401)
T ss_dssp ----------------------------------------CTTSTTEEEEECCTTTCEEEEEETTTCCE--EEEEE----
T ss_pred ----------------------------------------CCCCCCEEEEecCCCCCEEEEEECCCCCE--EEEEe----
Confidence 221 23677766 899999999988763 23332
Q ss_pred ccccCCCCCCeEEEEEecCCCeEEE--EeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCe
Q 001109 585 GIRTATESESVSALEFCSVTLNLAI--GSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPI 662 (1155)
Q Consensus 585 ~i~~~gh~~~V~~lafspdg~~Las--gs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~V 662 (1155)
+...|++++|+|++++|++ |+.||.|++|++...... ....+.+|.+.|
T Consensus 302 ------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-----------------------~~~~~~~h~~~v 352 (401)
T 4aez_A 302 ------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-----------------------KQVDIPAHDTRV 352 (401)
T ss_dssp ------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-----------------------EEEEEECCSSCC
T ss_pred ------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-----------------------eEEEecCCCCCE
Confidence 3358999999999999999 448999999999874321 123467899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEE
Q 001109 663 CNLKFSNFGARLAVGFECSQVAMLDISTFSVLFI 696 (1155)
Q Consensus 663 tslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~ 696 (1155)
++++|+|+|++||+|+.||.|+|||+.++..+..
T Consensus 353 ~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 353 LYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp CEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 9999999999999999999999999999877654
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.9e-28 Score=284.51 Aligned_cols=223 Identities=10% Similarity=0.037 Sum_probs=155.3
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc--eEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI--EGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA 114 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~--~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t 114 (1155)
+..+.+.|++++|+|+|++||+|+.||.|+||+..+. +.+..+ .|..+|.+++|+|++.+|++++.|++|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3456679999999999999999999999999998876 443333 4678999999999999999999999999999998
Q ss_pred Cc---eeeeecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccc
Q 001109 115 RR---ITSTLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQRE 190 (1155)
Q Consensus 115 ~~---~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~ 190 (1155)
+. ....+..+ ..|++++|+|++++|++|+.||.|++|+++....... ...+.
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~---------------------- 142 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV--SKHLK---------------------- 142 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC--CEEEC----------------------
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee--eeEee----------------------
Confidence 87 45555544 7899999999999999999999999997665321000 00000
Q ss_pred ccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecc
Q 001109 191 KGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGS 270 (1155)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~ 270 (1155)
+ .+...+. +++|+|++ ++|++++.||.|++||+..+........
T Consensus 143 -~----------------------~h~~~v~-----~~~~~~~~--------~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 186 (377)
T 3dwl_C 143 -R----------------------PLRSTIL-----SLDWHPNN--------VLLAAGCADRKAYVLSAYVRDVDAKPEA 186 (377)
T ss_dssp -S----------------------SCCSCEE-----EEEECTTS--------SEEEEEESSSCEEEEEECCSSCC-CCCS
T ss_pred -c----------------------ccCCCeE-----EEEEcCCC--------CEEEEEeCCCEEEEEEEEecccCCCccc
Confidence 0 0123344 49999974 5799999999999999965432110000
Q ss_pred cccccccccccCCCCCCCCC-C-cccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 271 KDLQLKTEIVDDPSKNAGHN-L-SETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
...+.. . ....... .|...|++++|+ |+|++||+|+.||.|++||+.++.
T Consensus 187 --------------~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 187 --------------SVWGSRLPFNTVCAEY-PSGGWVHAVGFS-PSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp --------------CSSCSCCCEEEEEECC-CCSSSEEEEEEC-TTSSCEEEEETTTEEC-CEECSTT
T ss_pred --------------cccccccchhhhhhcc-cCCceEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCC
Confidence 000000 0 0000000 257889999999 999999999999999999998653
No 81
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=4.3e-27 Score=265.33 Aligned_cols=154 Identities=6% Similarity=0.012 Sum_probs=122.8
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecC-------------CCeEEEEeCCCeEE
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSV-------------TLNLAIGSSSGLVW 617 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspd-------------g~~Lasgs~dG~V~ 617 (1155)
+.+|++|+.||+|++||+..+....... ..+|...|++++|+|+ +++||+|+.||+|+
T Consensus 113 g~~l~s~s~d~~v~~wd~~~~~~~~~~~---------~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~ 183 (297)
T 2pm7_B 113 GPMLLVASSDGKVSVVEFKENGTTSPII---------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183 (297)
T ss_dssp CSEEEEEETTSEEEEEEBCSSSCBCCEE---------EECCSSCEEEEEECCCC------------CCEEEEEETTSCEE
T ss_pred CcEEEEEECCCcEEEEEecCCCceeeee---------eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEE
Confidence 5689999999999999997653111111 2378889999999997 57999999999999
Q ss_pred EEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEecCCccE-
Q 001109 618 LYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG---ARLAVGFECSQVAMLDISTFSV- 693 (1155)
Q Consensus 618 lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg---~~LAsGs~Dg~V~lWDi~~~~~- 693 (1155)
+||+...... +.+...+.+|.+.|++|+|+|++ ++||+|+.||+|+|||++++..
T Consensus 184 lwd~~~~~~~---------------------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 184 IWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp EEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred EEEEcCCCce---------------------EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 9999864321 01234678999999999999995 8999999999999999987431
Q ss_pred -EEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC
Q 001109 694 -LFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST 756 (1155)
Q Consensus 694 -l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~ 756 (1155)
........+|..+|.+++|+ |++++|++++.|++|+||+..
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s----------------------~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWS----------------------LSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEEC----------------------SSSCCEEEEETTSCEEEEEEC
T ss_pred cceeeeecccCCCcEEEEEEC----------------------CCCCEEEEEcCCCcEEEEEEC
Confidence 11111124688999999999 899999999999999999976
No 82
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=2.9e-26 Score=258.49 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=83.8
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEe--CCCeEEEEEeccCccccce
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGS--SSGLVWLYNLIKSSNEETL 630 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs--~dG~V~lwd~~~~~~~~~~ 630 (1155)
.+++|+.|++|++||......... . .+...+..+.|+|++..+++++ .||.|++||+.++.
T Consensus 213 ~~~~~~~~~~i~lwd~~~~~~~~~--~----------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~----- 275 (318)
T 4ggc_A 213 ATGGGTSDRHIRIWNVCSGACLSA--V----------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA----- 275 (318)
T ss_dssp EEEECTTTCEEEEEETTTCCEEEE--E----------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-----
T ss_pred EEEecCCCCEEEEEeccccccccc--c----------cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc-----
Confidence 456778899999999987763211 1 2445899999999999988765 78999999998743
Q ss_pred eeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 001109 631 NLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIST 690 (1155)
Q Consensus 631 ~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~ 690 (1155)
++..+.+|.+.|++|+|+|||++||+|+.||+|+|||+.+
T Consensus 276 --------------------~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 276 --------------------KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp --------------------EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred --------------------EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 2457789999999999999999999999999999999875
No 83
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=6.8e-27 Score=277.06 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=124.7
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCC-eEEE--EeCCCeEEEEEec
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTL-NLAI--GSSSGLVWLYNLI 622 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~-~Las--gs~dG~V~lwd~~ 622 (1155)
.++|+++++++++.||.|++||...+...... + .....|..+|.+++|+|++. .+++ |+.||+|++||+.
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~-~------~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP-L------QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSSCSCC-S------EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred eecCCCCeeeeeeccccceEEeecccccccee-e------eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 56678889999999999999999876521100 0 01236778999999999765 4444 4579999999998
Q ss_pred cCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEecCCccEEEEeccC
Q 001109 623 KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF--ECSQVAMLDISTFSVLFITDSL 700 (1155)
Q Consensus 623 ~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs--~Dg~V~lWDi~~~~~l~~~~~~ 700 (1155)
++.. ...+. +...|.++.|+|+++.|++++ .||.|+|||+.++.++...
T Consensus 310 t~~~-------------------------~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l--- 360 (420)
T 4gga_A 310 SGAC-------------------------LSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--- 360 (420)
T ss_dssp TTEE-------------------------EEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE---
T ss_pred cccc-------------------------ceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE---
Confidence 7532 12223 456799999999999888755 7999999999999988764
Q ss_pred CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCcee
Q 001109 701 SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHIL 761 (1155)
Q Consensus 701 ~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l 761 (1155)
.+|.++|++|+|+ |||++|++|+.|++|+|||+.+....
T Consensus 361 ~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 361 KGHTSRVLSLTMS----------------------PDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp CCCSSCEEEEEEC----------------------TTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred cCCCCCEEEEEEc----------------------CCCCEEEEEecCCeEEEEECCCCCcc
Confidence 5799999999999 89999999999999999998765443
No 84
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=1.5e-26 Score=260.69 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=124.1
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeE---EEEeCCCeEEEEEec
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNL---AIGSSSGLVWLYNLI 622 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~L---asgs~dG~V~lwd~~ 622 (1155)
.+.++++++++|+.||+|++||+..+....... .....|..+|.+++++|++..+ ++|+.+++|++|+..
T Consensus 157 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~ 229 (318)
T 4ggc_A 157 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-------QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 229 (318)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCBTTBSCCS-------EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred EEcCCCCEEEEEecCcceeEEECCCCcccccce-------eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence 456778899999999999999998765211110 0122566799999999987754 467788999999987
Q ss_pred cCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEecCCccEEEEeccC
Q 001109 623 KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF--ECSQVAMLDISTFSVLFITDSL 700 (1155)
Q Consensus 623 ~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs--~Dg~V~lWDi~~~~~l~~~~~~ 700 (1155)
.... .....|...|.+++|+|+++.+++++ .||+|+|||+.+++++...
T Consensus 230 ~~~~--------------------------~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l--- 280 (318)
T 4ggc_A 230 SGAC--------------------------LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--- 280 (318)
T ss_dssp TCCE--------------------------EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE---
T ss_pred cccc--------------------------cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE---
Confidence 6432 12245778899999999999877654 8999999999999988764
Q ss_pred CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCC
Q 001109 701 SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTG 758 (1155)
Q Consensus 701 ~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG 758 (1155)
.+|.++|++|+|+ |||++|++|+.|++|+|||+...
T Consensus 281 ~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 281 KGHTSRVLSLTMS----------------------PDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CCCSSCEEEEEEC----------------------TTSSCEEEEETTTEEEEECCSCC
T ss_pred cCCCCCEEEEEEc----------------------CCCCEEEEEecCCeEEEEECCCC
Confidence 5799999999999 89999999999999999998754
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=4.5e-26 Score=270.01 Aligned_cols=284 Identities=16% Similarity=0.171 Sum_probs=204.8
Q ss_pred EEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecC--C-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeec
Q 001109 86 FKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPW--E-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIH 162 (1155)
Q Consensus 86 V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~--~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~ 162 (1155)
+..|+|+++ + +++++.|++|+|||+.++++...+.. | ..|++++|+|+|++|++|+.||+|++|++.. ++...
T Consensus 108 ~~~l~wS~~-n-~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--~~~~~ 183 (420)
T 4gga_A 108 LNLVDWSSG-N-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKRLR 183 (420)
T ss_dssp CBCEEECTT-S-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEE
T ss_pred ceeEEECCC-C-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--CcEEE
Confidence 456899986 4 45555699999999999998877654 3 5799999999999999999999999997654 33220
Q ss_pred cceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccc
Q 001109 163 SPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGF 242 (1155)
Q Consensus 163 ~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~ 242 (1155)
.+. + +...+.+ +.+++
T Consensus 184 ---~~~-----------------------~-----------------------h~~~v~~-----~s~~~---------- 199 (420)
T 4gga_A 184 ---NMT-----------------------S-----------------------HSARVGS-----LSWNS---------- 199 (420)
T ss_dssp ---EEC-----------------------C-----------------------CSSCEEE-----EEEET----------
T ss_pred ---EEe-----------------------C-----------------------CCCceEE-----EeeCC----------
Confidence 000 0 1222222 55543
Q ss_pred cEEEEEEcCCeEEEEEccCCeEE-EEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEE
Q 001109 243 SQLLLVYANGLIILWDVSEDKVV-LVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVG 321 (1155)
Q Consensus 243 ~~llsg~~dG~I~lWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg 321 (1155)
..|++|+.|+.+++||....... ... . .|...++.+.|+ ++|++++++
T Consensus 200 ~~l~sgs~d~~i~~~d~~~~~~~~~~~-------~-----------------------~h~~~~~~~~~~-~~g~~l~s~ 248 (420)
T 4gga_A 200 YILSSGSRSGHIHHHDVRVAEHHVATL-------S-----------------------GHSQEVCGLRWA-PDGRHLASG 248 (420)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEE-------E-----------------------CCSSCEEEEEEC-TTSSEEEEE
T ss_pred CEEEEEeCCCceeEeeecccceeeEEe-------c-----------------------ccccceeeeeec-CCCCeeeee
Confidence 57999999999999998765432 221 1 147789999999 999999999
Q ss_pred EcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEc
Q 001109 322 YVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYL 401 (1155)
Q Consensus 322 ~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l 401 (1155)
+.||.|++|+..++.....
T Consensus 249 ~~D~~v~i~~~~~~~~~~~------------------------------------------------------------- 267 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWV------------------------------------------------------------- 267 (420)
T ss_dssp ETTSCEEEEESSCCSSCSC-------------------------------------------------------------
T ss_pred eccccceEEeeccccccce-------------------------------------------------------------
Confidence 9999999999875421000
Q ss_pred cCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCccc
Q 001109 402 NWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLI 481 (1155)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~ 481 (1155)
.+.. .
T Consensus 268 ------------------------------------------------~~~~---------------------------~ 272 (420)
T 4gga_A 268 ------------------------------------------------PLQT---------------------------F 272 (420)
T ss_dssp ------------------------------------------------CSEE---------------------------E
T ss_pred ------------------------------------------------eeee---------------------------e
Confidence 0000 0
Q ss_pred ccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEE--EEEC
Q 001109 482 PTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYI--AGYR 559 (1155)
Q Consensus 482 ~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLa--Tgs~ 559 (1155)
..|...|.++++++. .+.+++ +|+.
T Consensus 273 ~~~~~~V~~~~~~p~-----------------------------------------------------~~~~la~~~gs~ 299 (420)
T 4gga_A 273 TQHQGAVKAVAWCPW-----------------------------------------------------QSNVLATGGGTS 299 (420)
T ss_dssp CCCSSCEEEEEECTT-----------------------------------------------------CTTEEEEEECTT
T ss_pred cccCCceeeeeeCCC-----------------------------------------------------cccEEEEEeecC
Confidence 012333444444211 112344 4568
Q ss_pred CCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEe--CCCeEEEEEeccCccccceeeeccCC
Q 001109 560 DGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGS--SSGLVWLYNLIKSSNEETLNLVTETG 637 (1155)
Q Consensus 560 DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs--~dG~V~lwd~~~~~~~~~~~~v~~~~ 637 (1155)
|++|++||+.++... ..+. +...|.++.|+|+++.|++++ .||.|+|||+.+..
T Consensus 300 D~~I~iwd~~t~~~~--~~~~----------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~------------ 355 (420)
T 4gga_A 300 DRHIRIWNVCSGACL--SAVD----------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA------------ 355 (420)
T ss_dssp TCEEEEEETTTTEEE--EEEE----------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC------------
T ss_pred CCEEEEEeCCccccc--eeec----------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc------------
Confidence 999999999988632 2222 224799999999999998876 78999999997643
Q ss_pred ceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEE
Q 001109 638 KEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVL 694 (1155)
Q Consensus 638 ~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l 694 (1155)
++..|.+|.+.|++|+|||||++||+|+.||+|+|||+......
T Consensus 356 -------------~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 356 -------------KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp -------------EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred -------------EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 34677899999999999999999999999999999999875443
No 86
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=4.5e-26 Score=272.74 Aligned_cols=154 Identities=9% Similarity=0.107 Sum_probs=132.6
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.++++++++++|+.||+|++||+..+.. +..+. +|..+|++++|+|++.+|++|+.||.|++||+.++.
T Consensus 275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~---------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKC--LYILS---------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEE--EEEEC---------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcE--EEEec---------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 4568889999999999999999987762 33332 688899999999999999999999999999998743
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
+...+.+|...|++++|+ +++|++|+.||+|++||+.++....... |..
T Consensus 344 -------------------------~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~----~~~ 392 (464)
T 3v7d_B 344 -------------------------LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH----HTN 392 (464)
T ss_dssp -------------------------EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE----CTT
T ss_pred -------------------------EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec----CCC
Confidence 235678899999999998 5799999999999999999987766542 667
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
.+..++|+ |++++|++++ |++|++||..+|+++...
T Consensus 393 ~~~~~~~~----------------------~~~~~l~~~~-dg~i~iwd~~~g~~~~~~ 428 (464)
T 3v7d_B 393 LSAITTFY----------------------VSDNILVSGS-ENQFNIYNLRSGKLVHAN 428 (464)
T ss_dssp CCCEEEEE----------------------ECSSEEEEEE-TTEEEEEETTTCCEEESC
T ss_pred CccEEEEE----------------------eCCCEEEEec-CCeEEEEECCCCcEEehh
Confidence 78888998 7889999998 999999999999999864
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=270.24 Aligned_cols=340 Identities=12% Similarity=0.111 Sum_probs=228.5
Q ss_pred cCCeEEEEECCCCceeeeecCC-CceeEEEEec-CCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEe
Q 001109 103 SGNEIQLWDLEARRITSTLPWE-SNITAFSVIF-GTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLL 180 (1155)
Q Consensus 103 ~Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~sp-d~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l 180 (1155)
.++++++|+++.++....+..| +.|++++|+| ++++|++|+.||.|++|+++....... +.... .
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~~--~-------- 87 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY---YTCKA--V-------- 87 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC---EEECE--E--------
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce---Eeccc--c--------
Confidence 3567889999988888888877 8999999999 999999999999999998776431110 00000 0
Q ss_pred eEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEcc
Q 001109 181 EFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVS 260 (1155)
Q Consensus 181 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~ 260 (1155)
....... ...+...| .+++|+|++. ++|++++.||.|++||+.
T Consensus 88 ----------------------~~~~~~~---~~~~~~~v-----~~~~~~~~~~-------~~l~s~~~d~~i~iwd~~ 130 (408)
T 4a11_B 88 ----------------------CSIGRDH---PDVHRYSV-----ETVQWYPHDT-------GMFTSSSFDKTLKVWDTN 130 (408)
T ss_dssp ----------------------EEECTTC---TTCCSSCE-----EEEEECTTCT-------TCEEEEETTSEEEEEETT
T ss_pred ----------------------ccccccc---cccCCCcE-----EEEEEccCCC-------cEEEEEeCCCeEEEeeCC
Confidence 0000000 00023334 4499999543 579999999999999999
Q ss_pred CCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEec---CCCeEEEEEcCCcEEEEEcCCCCC
Q 001109 261 EDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASN---DGSVLAVGYVDGDILLWNLRAAAS 337 (1155)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~p---dG~~lasg~~DG~I~lWd~~s~~~ 337 (1155)
+++.+.... +...+.+++|+ + ++.+|++|+.||.|++||+.++..
T Consensus 131 ~~~~~~~~~-------------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 131 TLQTADVFN-------------------------------FEETVYSHHMS-PVSTKHCLVAVGTRGPKVQLCDLKSGSC 178 (408)
T ss_dssp TTEEEEEEE-------------------------------CSSCEEEEEEC-SSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred CCccceecc-------------------------------CCCceeeeEee-cCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence 998876521 25568899998 6 455999999999999999865321
Q ss_pred ccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeee
Q 001109 338 TKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVD 417 (1155)
Q Consensus 338 ~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~ 417 (1155)
.. .
T Consensus 179 ~~--------------------------~--------------------------------------------------- 181 (408)
T 4a11_B 179 SH--------------------------I--------------------------------------------------- 181 (408)
T ss_dssp CE--------------------------E---------------------------------------------------
T ss_pred ee--------------------------e---------------------------------------------------
Confidence 00 0
Q ss_pred ecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeec
Q 001109 418 LERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVC 497 (1155)
Q Consensus 418 l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~ 497 (1155)
+..|...|+++++
T Consensus 182 ---------------------------------------------------------------~~~~~~~v~~~~~---- 194 (408)
T 4a11_B 182 ---------------------------------------------------------------LQGHRQEILAVSW---- 194 (408)
T ss_dssp ---------------------------------------------------------------ECCCCSCEEEEEE----
T ss_pred ---------------------------------------------------------------ecCCCCcEEEEEE----
Confidence 0012223333333
Q ss_pred CCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCc-EEEEEECCCcEEEEeCCCCCeeee
Q 001109 498 RDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVER-LYIAGYRDGSTRIWDATYPTLSLI 576 (1155)
Q Consensus 498 ~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~-lLaTgs~DgtVrlWD~~~~~l~~l 576 (1155)
+|+++ ++++|+.||+|++||+..+.. .+
T Consensus 195 --------------------------------------------------~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~ 223 (408)
T 4a11_B 195 --------------------------------------------------SPRYDYILATASADSRVKLWDVRRASG-CL 223 (408)
T ss_dssp --------------------------------------------------CSSCTTEEEEEETTSCEEEEETTCSSC-CS
T ss_pred --------------------------------------------------CCCCCcEEEEEcCCCcEEEEECCCCCc-cc
Confidence 23333 688889999999999876541 11
Q ss_pred eeeCCC------cCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCc
Q 001109 577 HVFGSE------LPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQ 650 (1155)
Q Consensus 577 ~~l~~~------~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~ 650 (1155)
..+... .......+|..+|++++|+|++++|++|+.||.|++|++.......... +
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------------~-- 285 (408)
T 4a11_B 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY----------------G-- 285 (408)
T ss_dssp EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCC----------------C--
T ss_pred ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecc----------------c--
Confidence 222110 0001124788899999999999999999999999999998764321000 0
Q ss_pred eeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCC
Q 001109 651 CKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDI 730 (1155)
Q Consensus 651 ~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~ 730 (1155)
.........+........+..+++++.|+.|++||+.++..+... .+|..+|.+++|+
T Consensus 286 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s----------------- 343 (408)
T 4a11_B 286 --KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML---KGHYKTVDCCVFQ----------------- 343 (408)
T ss_dssp --CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE---CCCSSCEEEEEEE-----------------
T ss_pred --cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee---ccCCCeEEEEEEc-----------------
Confidence 000011112222233344556777888999999999999988765 4699999999999
Q ss_pred CCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 731 NSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 731 ~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
||+++|++++.||.|++||+.+++.+...
T Consensus 344 -----~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 344 -----SNFQELYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp -----TTTTEEEEEETTSCEEEEEECC-------
T ss_pred -----CCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence 89999999999999999999998876554
No 88
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=2.1e-26 Score=273.19 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=113.8
Q ss_pred ccCCcC-cEEEEEECCCcEEEEeCCCCCeee--eeeeCCCcC---ccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEE
Q 001109 546 EDYLVE-RLYIAGYRDGSTRIWDATYPTLSL--IHVFGSELP---GIRTATESESVSALEFCSVTLNLAIGSSSGLVWLY 619 (1155)
Q Consensus 546 ~~s~~~-~lLaTgs~DgtVrlWD~~~~~l~~--l~~l~~~~~---~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lw 619 (1155)
+|+|++ ++|++|+.||+|++||+..+.... +..+..+.. .....+|..+|++++|+|++++|++|+. |.|++|
T Consensus 233 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iw 311 (447)
T 3dw8_B 233 EFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVW 311 (447)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEE
T ss_pred EECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEE
Confidence 344665 789999999999999998876310 122221000 0000122248999999999999999999 999999
Q ss_pred Eecc-CccccceeeeccCCceEEEecCCCCCceeEEeecCCC---------------CeEEEEEcCCCCEEEEEeCCCcE
Q 001109 620 NLIK-SSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNS---------------PICNLKFSNFGARLAVGFECSQV 683 (1155)
Q Consensus 620 d~~~-~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~---------------~VtslafSpdg~~LAsGs~Dg~V 683 (1155)
|+.. +.. +..+.+|.. .+..++|+|+|++||+|+.||.|
T Consensus 312 d~~~~~~~-------------------------~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v 366 (447)
T 3dw8_B 312 DLNMENRP-------------------------VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF 366 (447)
T ss_dssp ETTCCSSC-------------------------SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred eCCCCccc-------------------------cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence 9976 321 123344432 13459999999999999999999
Q ss_pred EEEecCCccEEEEecc-----------------------------CCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCC
Q 001109 684 AMLDISTFSVLFITDS-----------------------------LSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSN 734 (1155)
Q Consensus 684 ~lWDi~~~~~l~~~~~-----------------------------~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~ 734 (1155)
+|||+.++..+..... ...+...|.+++|+
T Consensus 367 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------------- 425 (447)
T 3dw8_B 367 RMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWH--------------------- 425 (447)
T ss_dssp EEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEEC---------------------
T ss_pred EEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEEC---------------------
Confidence 9999999877531100 01345678899998
Q ss_pred CCCCcEEEEEeCCceEEEEEC
Q 001109 735 DTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 735 ~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
|++++|++++.|+ +.+|..
T Consensus 426 -p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 426 -PKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp -SSSSEEEEECSSC-EEEEEC
T ss_pred -CCCCEEEEEecce-eeeecc
Confidence 8999999999887 677764
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.1e-27 Score=274.35 Aligned_cols=261 Identities=14% Similarity=0.141 Sum_probs=167.5
Q ss_pred cccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccc
Q 001109 218 RSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSD 297 (1155)
Q Consensus 218 ~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1155)
.+|.+ ++|+|+ + ++|++|+.||.|+|||+.++....... +.
T Consensus 12 ~~v~~-----~~~s~~--g------~~l~~~~~d~~i~iw~~~~~~~~~~~~-----~~--------------------- 52 (377)
T 3dwl_C 12 KPSYE-----HAFNSQ--R------TEFVTTTATNQVELYEQDGNGWKHART-----FS--------------------- 52 (377)
T ss_dssp SCCSC-----CEECSS--S------SEEECCCSSSCBCEEEEETTEEEECCC-----BC---------------------
T ss_pred CcEEE-----EEECCC--C------CEEEEecCCCEEEEEEccCCceEEEEE-----Ee---------------------
Confidence 44555 999997 4 679999999999999999874222110 11
Q ss_pred cccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCC
Q 001109 298 NEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRND 377 (1155)
Q Consensus 298 ~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~ 377 (1155)
.|...|++++|+ |+|++|++|+.||.|++||+.++..... + .....|..+|..+.|++
T Consensus 53 --~h~~~v~~~~~s-~~~~~l~s~s~d~~v~vwd~~~~~~~~~---------~----~~~~~~~~~v~~~~~~~------ 110 (377)
T 3dwl_C 53 --DHDKIVTCVDWA-PKSNRIVTCSQDRNAYVYEKRPDGTWKQ---------T----LVLLRLNRAATFVRWSP------ 110 (377)
T ss_dssp --CCSSCEEEEEEC-TTTCCEEEEETTSSEEEC------CCCC---------E----EECCCCSSCEEEEECCT------
T ss_pred --cCCceEEEEEEe-CCCCEEEEEeCCCeEEEEEcCCCCceee---------e----eEecccCCceEEEEECC------
Confidence 257889999999 9999999999999999999987641000 0 01123455566665543
Q ss_pred CCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCC
Q 001109 378 CRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRP 457 (1155)
Q Consensus 378 ~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~ 457 (1155)
++. .+++.+.+|.+++||..
T Consensus 111 -~~~-----------------------------------------------------------~l~~~~~d~~i~iwd~~ 130 (377)
T 3dwl_C 111 -NED-----------------------------------------------------------KFAVGSGARVISVCYFE 130 (377)
T ss_dssp -TSS-----------------------------------------------------------CCEEEESSSCEEECCC-
T ss_pred -CCC-----------------------------------------------------------EEEEEecCCeEEEEEEC
Confidence 111 34445566778888864
Q ss_pred CCCCcccccccccCCCcccCCccccc-CCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccC
Q 001109 458 RFSPKKSQEKKKISSSSLQYPMLIPT-IEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTG 536 (1155)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~~~~~~~~~-h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~g 536 (1155)
.... ......+.. |...|++
T Consensus 131 ~~~~-------------~~~~~~~~~~h~~~v~~---------------------------------------------- 151 (377)
T 3dwl_C 131 QEND-------------WWVSKHLKRPLRSTILS---------------------------------------------- 151 (377)
T ss_dssp -----------------CCCCEEECSSCCSCEEE----------------------------------------------
T ss_pred Cccc-------------ceeeeEeecccCCCeEE----------------------------------------------
Confidence 2110 001111111 3333322
Q ss_pred CCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeee---eCCC--cC--ccccCCCCCCeEEEEEecCCCeEEE
Q 001109 537 GIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHV---FGSE--LP--GIRTATESESVSALEFCSVTLNLAI 609 (1155)
Q Consensus 537 g~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~---l~~~--~~--~i~~~gh~~~V~~lafspdg~~Las 609 (1155)
+ +++|++++|++|+.||+|++||+....+..... .... .. -... +|..+|++++|+|++++||+
T Consensus 152 -------~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~ 222 (377)
T 3dwl_C 152 -------L-DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY 222 (377)
T ss_dssp -------E-EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred -------E-EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence 3 567788899999999999999986432110000 0000 00 0012 78889999999999999999
Q ss_pred EeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 001109 610 GSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIS 689 (1155)
Q Consensus 610 gs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~ 689 (1155)
|+.||.|++||+...... ..++..+.+|..+|++++|+|+|++||+|+.|+.+ +|+..
T Consensus 223 ~~~d~~i~iwd~~~~~~~---------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 223 AGHDSSVTIAYPSAPEQP---------------------PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EETTTEEC-CEECSTTSC---------------------EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EeCCCcEEEEECCCCCCc---------------------ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999999999999875431 00124567899999999999999999999977766 66654
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=5.2e-27 Score=267.28 Aligned_cols=156 Identities=12% Similarity=0.123 Sum_probs=121.4
Q ss_pred CcEEEEEECCCcEEEEeCCCCC-eeeeeeeCCCcCccccCCCCCCeEEEEEecC-----------------CCeEEEEeC
Q 001109 551 ERLYIAGYRDGSTRIWDATYPT-LSLIHVFGSELPGIRTATESESVSALEFCSV-----------------TLNLAIGSS 612 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~-l~~l~~l~~~~~~i~~~gh~~~V~~lafspd-----------------g~~Lasgs~ 612 (1155)
+.+|++|+.||+|++||+..+. ...... ..+|...|.+++|+|+ +++||+|+.
T Consensus 117 g~~lasgs~D~~i~lwd~~~~~~~~~~~~---------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 187 (316)
T 3bg1_A 117 GLILACGSSDGAISLLTYTGEGQWEVKKI---------NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC 187 (316)
T ss_dssp CSCEEEECSSSCEEEEEECSSSCEEECCB---------TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBT
T ss_pred CcEEEEEcCCCCEEEEecCCCCCcceeee---------eccccCCcceEEEccccCCccccccccccCccccceEEEecC
Confidence 4579999999999999997653 111111 2378889999999998 478999999
Q ss_pred CCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEec
Q 001109 613 SGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG----ARLAVGFECSQVAMLDI 688 (1155)
Q Consensus 613 dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg----~~LAsGs~Dg~V~lWDi 688 (1155)
||+|++||+..... +.+...+.+|.+.|++|+|+|++ ++||+|+.||+|+|||+
T Consensus 188 D~~v~lWd~~~~~~----------------------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 188 DNLIKLWKEEEDGQ----------------------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp TSBCCEEEECTTSC----------------------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred CCeEEEEEeCCCCc----------------------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 99999999964311 11234678999999999999997 89999999999999999
Q ss_pred CCccE-EEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECC-CCc
Q 001109 689 STFSV-LFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDST-TGH 759 (1155)
Q Consensus 689 ~~~~~-l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~-tG~ 759 (1155)
.+... ......+.+|..+|.+++|+ |++++|++++.|++|+||+.. .|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~v~~v~~s----------------------p~g~~las~~~D~~v~lw~~~~~g~ 296 (316)
T 3bg1_A 246 DDASSNTWSPKLLHKFNDVVWHVSWS----------------------ITANILAVSGGDNKVTLWKESVDGQ 296 (316)
T ss_dssp SSTTCCCCBCCEEEECSSCEEEEEEC----------------------TTTCCEEEEESSSCEEEEEECTTSC
T ss_pred cCccccchhhhhhhcCCCcEEEEEEc----------------------CCCCEEEEEcCCCeEEEEEECCCCc
Confidence 86310 00001123588999999999 899999999999999999975 343
No 91
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=1.6e-25 Score=266.33 Aligned_cols=127 Identities=17% Similarity=0.282 Sum_probs=85.0
Q ss_pred cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccccee
Q 001109 552 RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLN 631 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~ 631 (1155)
+++++|+.||+|++||+.++.. +..+. +|..+|++++| ++.+|++|+.||.|++||+........
T Consensus 307 ~~l~~g~~dg~i~iwd~~~~~~--~~~~~---------~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~-- 371 (435)
T 1p22_A 307 RLVVSGSSDNTIRLWDIECGAC--LRVLE---------GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA-- 371 (435)
T ss_dssp TEEEEEETTSCEEEEETTTCCE--EEEEC---------CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS--
T ss_pred CEEEEEeCCCeEEEEECCCCCE--EEEEe---------CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc--
Confidence 4789999999999999988763 33333 68889999999 788999999999999999976432100
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEE
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLA 711 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~sla 711 (1155)
..+..+...+.+|.+.|++++| ++++||+|+.||+|+|||+.+....... ....+..++.
T Consensus 372 --------------~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~----~~~~~~~~~~ 431 (435)
T 1p22_A 372 --------------PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE----PPRSPSRTYT 431 (435)
T ss_dssp --------------CTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------------------------
T ss_pred --------------cccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccC----CCCCCcccee
Confidence 0112245677899999999999 7889999999999999999886554322 1334555555
Q ss_pred Ee
Q 001109 712 VK 713 (1155)
Q Consensus 712 fs 713 (1155)
|.
T Consensus 432 ~~ 433 (435)
T 1p22_A 432 YI 433 (435)
T ss_dssp --
T ss_pred ee
Confidence 54
No 92
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=1.3e-25 Score=253.20 Aligned_cols=253 Identities=13% Similarity=0.173 Sum_probs=184.4
Q ss_pred eccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc--eEEEE-cCCCCCEEEEEEEcC--CcEEEEEecCCeEEEEE
Q 001109 37 LHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI--EGLLV-SPKQLAFKHLEFLQN--QGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~--~~~~~-~~~~~~V~~l~Fs~d--g~~LvS~s~Dg~I~vWD 111 (1155)
...||.+.|++++|+|+|++||+|+.||+|+||+..+. +.+.. ..|..+|.+++|+++ +.+|++++.|++|+|||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 44699999999999999999999999999999998642 22222 357889999999864 78999999999999999
Q ss_pred CCCCc--eeeeecCC-CceeEEEEecC--CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 112 LEARR--ITSTLPWE-SNITAFSVIFG--TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 112 l~t~~--~~~~l~~~-~~Vtsva~spd--~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
+++++ .+..+..| ..|++++|+|+ +.+|++|+.||+|++|++....... +..+..
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---~~~~~~----------------- 143 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PIIIDA----------------- 143 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---CEEEEC-----------------
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---eeeeec-----------------
Confidence 99874 45566655 78999999998 8999999999999999876532100 000000
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecc-----------cccccccccEEEEEEcCCeEE
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQK-----------HVNSTLGFSQLLLVYANGLII 255 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~-----------~~~~~~~~~~llsg~~dG~I~ 255 (1155)
+...+.+ ++|+|+. .+ ++|++|+.||.|+
T Consensus 144 -----------------------------h~~~v~~-----~~~~p~~~~~~~~~~~~~~~------~~l~sgs~D~~v~ 183 (297)
T 2pm7_B 144 -----------------------------HAIGVNS-----ASWAPATIEEDGEHNGTKES------RKFVTGGADNLVK 183 (297)
T ss_dssp -----------------------------CSSCEEE-----EEECCCC------------C------CEEEEEETTSCEE
T ss_pred -----------------------------ccCccce-----EeecCCcccccccCCCCCCc------ceEEEEcCCCcEE
Confidence 1122222 6666642 12 5799999999999
Q ss_pred EEEccCCe----EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCC---CeEEEEEcCCcEE
Q 001109 256 LWDVSEDK----VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDG---SVLAVGYVDGDIL 328 (1155)
Q Consensus 256 lWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG---~~lasg~~DG~I~ 328 (1155)
|||+.+++ +... +. .|...|.+++|+ |++ .+||+|+.||+|+
T Consensus 184 lwd~~~~~~~~~~~~~-------l~-----------------------~H~~~V~~v~~s-p~~~~~~~las~s~D~~v~ 232 (297)
T 2pm7_B 184 IWKYNSDAQTYVLEST-------LE-----------------------GHSDWVRDVAWS-PTVLLRSYMASVSQDRTCI 232 (297)
T ss_dssp EEEEETTTTEEEEEEE-------EC-----------------------CCSSCEEEEEEC-CCCSSSEEEEEEETTSCEE
T ss_pred EEEEcCCCceEEEEEE-------ec-----------------------CCCCceEEEEEC-CCCCCceEEEEEECCCcEE
Confidence 99998765 2222 11 257889999999 884 8999999999999
Q ss_pred EEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEcc
Q 001109 329 LWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLN 402 (1155)
Q Consensus 329 lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~ 402 (1155)
+||+.+..... .+..+....+..+|..++|++ ++.++++++.| +.+.+|...
T Consensus 233 iWd~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~-------~g~~las~~~D----~~v~lw~~~ 284 (297)
T 2pm7_B 233 IWTQDNEQGPW-----------KKTLLKEEKFPDVLWRASWSL-------SGNVLALSGGD----NKVTLWKEN 284 (297)
T ss_dssp EEEESSTTSCC-----------EEEESSSSCCSSCEEEEEECS-------SSCCEEEEETT----SCEEEEEEC
T ss_pred EEEeCCCCCcc-----------ceeeeecccCCCcEEEEEECC-------CCCEEEEEcCC----CcEEEEEEC
Confidence 99997643110 001111234567899999975 45566666654 568887653
No 93
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=2.1e-25 Score=256.03 Aligned_cols=81 Identities=10% Similarity=0.166 Sum_probs=69.9
Q ss_pred ccCCCCCceEEEEcCC---CCEEEEEEcCCeEEEEccCC-ceEE--EEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEE
Q 001109 38 HYGIPSTASILAFDHV---QSLLAIGTQDGRIKVIGGDN-IEGL--LVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~---g~lLAsgs~DG~I~vw~~~~-~~~~--~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWD 111 (1155)
..+|.+.|++++|+|+ |++||+|+.||.|+||+... ...+ ....|..+|.+++|+|++.+|++++.|++|++||
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence 3699999999999999 69999999999999999875 3322 2234788999999999999999999999999999
Q ss_pred CCCCcee
Q 001109 112 LEARRIT 118 (1155)
Q Consensus 112 l~t~~~~ 118 (1155)
+.+++.+
T Consensus 115 ~~~~~~~ 121 (368)
T 3mmy_A 115 LSSNQAI 121 (368)
T ss_dssp TTTTEEE
T ss_pred cCCCCce
Confidence 9877654
No 94
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=4.2e-25 Score=250.37 Aligned_cols=221 Identities=14% Similarity=0.171 Sum_probs=165.5
Q ss_pred eccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc----eEEEE-cCCCCCEEEEEEEc--CCcEEEEEecCCeEEE
Q 001109 37 LHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI----EGLLV-SPKQLAFKHLEFLQ--NQGFLVSISSGNEIQL 109 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~----~~~~~-~~~~~~V~~l~Fs~--dg~~LvS~s~Dg~I~v 109 (1155)
+..||.+.|++++|+|+|++||+|+.||+|+||+.... +.... ..|..+|.+++|+| ++.+|++++.|++|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 44799999999999999999999999999999998653 23322 25788999999999 5899999999999999
Q ss_pred EECCCC---------ceeeeecCC-CceeEEEEecC--CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeece
Q 001109 110 WDLEAR---------RITSTLPWE-SNITAFSVIFG--TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNH 177 (1155)
Q Consensus 110 WDl~t~---------~~~~~l~~~-~~Vtsva~spd--~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 177 (1155)
||+.++ +.+..+..+ +.|++++|+|+ +++|++|+.||.|++|++.... .. ..+.....
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~-~~~~~~~~------- 155 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS--DL-RSWTLTSE------- 155 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT--CT-TCCEEEEE-------
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH--Hh-cccccccc-------
Confidence 999987 456666655 88999999999 9999999999999999765532 11 00110000
Q ss_pred eEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecc-cccccccccEEEEEEcCCeEEE
Q 001109 178 LLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQK-HVNSTLGFSQLLLVYANGLIIL 256 (1155)
Q Consensus 178 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~-~~~~~~~~~~llsg~~dG~I~l 256 (1155)
.......+. .+...+. ++.|+|+. .+ +++++++.+|.+.+
T Consensus 156 ----------------------~~~~~~~~~------~~~~~~~-----~~~~~p~~~~~------~~l~~~~~~~~~~~ 196 (351)
T 3f3f_A 156 ----------------------MKVLSIPPA------NHLQSDF-----CLSWCPSRFSP------EKLAVSALEQAIIY 196 (351)
T ss_dssp ----------------------EESCSCCCS------SCSCCCE-----EEEECCCSSSC------CEEEEEETTEEEEE
T ss_pred ----------------------ccccccccC------Cccccee-----EEEeccCCCCC------cEEEEecCCCcEEE
Confidence 000000000 0123333 49999962 12 68999999999988
Q ss_pred EEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCC----CeEEEEEcCCcEEEEEc
Q 001109 257 WDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDG----SVLAVGYVDGDILLWNL 332 (1155)
Q Consensus 257 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG----~~lasg~~DG~I~lWd~ 332 (1155)
|+...++....... . .|...|++++|+ |+| .+|++|+.||.|++||+
T Consensus 197 ~~~~~~~~~~~~~~-----~-----------------------~h~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 197 QRGKDGKLHVAAKL-----P-----------------------GHKSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp EECTTSCEEEEEEC-----C-----------------------CCCSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEE
T ss_pred EccCCCceeeeeec-----C-----------------------CCCcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeC
Confidence 88887775432111 1 157889999999 998 89999999999999999
Q ss_pred CCC
Q 001109 333 RAA 335 (1155)
Q Consensus 333 ~s~ 335 (1155)
...
T Consensus 248 ~~~ 250 (351)
T 3f3f_A 248 TEK 250 (351)
T ss_dssp EEC
T ss_pred CCC
Confidence 764
No 95
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=4.6e-25 Score=250.03 Aligned_cols=166 Identities=16% Similarity=0.125 Sum_probs=130.0
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCC--cCccccCCCCCCeEEEEEecC---CCeEEEEeCCCeEEEEEeccCc
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSE--LPGIRTATESESVSALEFCSV---TLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~--~~~i~~~gh~~~V~~lafspd---g~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+++|++|+.||+|++||+..+.......+... ...+...+|...|.+++|+|+ +.+|++++.+|.+.+|+...+.
T Consensus 124 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 203 (351)
T 3f3f_A 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK 203 (351)
T ss_dssp CSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC
T ss_pred CcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc
Confidence 66899999999999999987653211111111 111223367789999999998 9999999999999777765532
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEecCCc----------
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFG----ARLAVGFECSQVAMLDISTF---------- 691 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg----~~LAsGs~Dg~V~lWDi~~~---------- 691 (1155)
. .+...+.+|.+.|++++|+|++ ++||+|+.||.|++||+..+
T Consensus 204 ~-----------------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 260 (351)
T 3f3f_A 204 L-----------------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESL 260 (351)
T ss_dssp E-----------------------EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------
T ss_pred e-----------------------eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcc
Confidence 1 1234567899999999999998 89999999999999999875
Q ss_pred ------------------------------------cEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCC
Q 001109 692 ------------------------------------SVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSND 735 (1155)
Q Consensus 692 ------------------------------------~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~ 735 (1155)
..+. .+.+|..+|.+++|+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~s---------------------- 315 (351)
T 3f3f_A 261 TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS---EHDDHNGEVWSVSWN---------------------- 315 (351)
T ss_dssp ------------------------------CCSEEEEEEE---EECTTSSCEEEEEEC----------------------
T ss_pred cceeccCCCcccccccccccccccceeeeecccccccEEE---EEecccccEEEEEEc----------------------
Confidence 2333 235799999999999
Q ss_pred CCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 736 TKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 736 pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
|++++|++++.||+|+|||..+++.+...
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred CCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 88999999999999999999998765544
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=6.8e-25 Score=250.19 Aligned_cols=209 Identities=13% Similarity=0.045 Sum_probs=158.8
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce----EEEEcCCCCCEEEEEEEcCCc-EEEEEecCCeEEEEEC
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE----GLLVSPKQLAFKHLEFLQNQG-FLVSISSGNEIQLWDL 112 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~----~~~~~~~~~~V~~l~Fs~dg~-~LvS~s~Dg~I~vWDl 112 (1155)
..+|.+.|++++|+|++++||+|+.||.|+||+..... ......|..+|.+++|+|++. +|++++.|+.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 35899999999999999999999999999999976554 444446788999999999999 9999999999999999
Q ss_pred -CCCceeeeecC--C-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccc
Q 001109 113 -EARRITSTLPW--E-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQ 188 (1155)
Q Consensus 113 -~t~~~~~~l~~--~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~ 188 (1155)
.+++. ..+.. + ..|++++|+| ++++++|+.||.|++|++....+... .....
T Consensus 87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~------------------ 142 (342)
T 1yfq_A 87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI----AVKNL------------------ 142 (342)
T ss_dssp SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE----EEEES------------------
T ss_pred ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc----cccCC------------------
Confidence 88866 44554 4 7899999999 99999999999999997653110000 00000
Q ss_pred ccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccC-CeEEEE
Q 001109 189 REKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSE-DKVVLV 267 (1155)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~-~~~~~~ 267 (1155)
......+...+. +++|+|+ .+++++.||.|++||+.+ +.....
T Consensus 143 ---------------------~~~~~~~~~~v~-----~~~~~~~----------~l~~~~~d~~i~i~d~~~~~~~~~~ 186 (342)
T 1yfq_A 143 ---------------------NSNNTKVKNKIF-----TMDTNSS----------RLIVGMNNSQVQWFRLPLCEDDNGT 186 (342)
T ss_dssp ---------------------CSSSSSSCCCEE-----EEEECSS----------EEEEEESTTEEEEEESSCCTTCCCE
T ss_pred ---------------------eeeEEeeCCceE-----EEEecCC----------cEEEEeCCCeEEEEECCccccccce
Confidence 000001123333 4999875 399999999999999987 442111
Q ss_pred ecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEec-CCCeEEEEEcCCcEEEEEcCCC
Q 001109 268 RGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASN-DGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~p-dG~~lasg~~DG~I~lWd~~s~ 335 (1155)
.. . ..+...|.+++|+ | +|++|++|+.||.|++|++...
T Consensus 187 ~~------~----------------------~~~~~~i~~i~~~-~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 187 IE------E----------------------SGLKYQIRDVALL-PKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EE------E----------------------CSCSSCEEEEEEC-SGGGCEEEEEETTSEEEEEECCTT
T ss_pred ee------e----------------------cCCCCceeEEEEC-CCCCCEEEEEecCCcEEEEEEcCC
Confidence 00 0 0136679999999 9 9999999999999999998653
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=3.6e-25 Score=262.68 Aligned_cols=218 Identities=12% Similarity=0.199 Sum_probs=154.4
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce-----------EEEE-cCCC------------CCEEEEEEEcCC-
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE-----------GLLV-SPKQ------------LAFKHLEFLQNQ- 95 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~-----------~~~~-~~~~------------~~V~~l~Fs~dg- 95 (1155)
+.+.|++++|+|+|++||+|+.||.|+||+..+.. .... ..|. .+|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 45789999999999999999999999999987554 2222 2455 789999999998
Q ss_pred -cEEEEEecCCeEEEEECCCCcee---------------------------------------ee-ecCC-CceeEEEEe
Q 001109 96 -GFLVSISSGNEIQLWDLEARRIT---------------------------------------ST-LPWE-SNITAFSVI 133 (1155)
Q Consensus 96 -~~LvS~s~Dg~I~vWDl~t~~~~---------------------------------------~~-l~~~-~~Vtsva~s 133 (1155)
.+|++++.|++|++||+.++... .. +..| ..|++++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 78999999999999999875432 12 2334 789999999
Q ss_pred cCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcc
Q 001109 134 FGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFI 213 (1155)
Q Consensus 134 pd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (1155)
|++++|++| .||.|++|++......+. .+. +.+.. .
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~--~~~--------------------------------------~~~~~---~ 222 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFN--IVD--------------------------------------IKPAN---M 222 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEE--EEE--------------------------------------CCCSS---G
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceee--eee--------------------------------------ccccc---c
Confidence 999999999 899999997653211110 000 00000 0
Q ss_pred cccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeE----EEEecccccccccccccCCCCCCCC
Q 001109 214 DFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKV----VLVRGSKDLQLKTEIVDDPSKNAGH 289 (1155)
Q Consensus 214 ~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1155)
..+... |.+++|+|++. ++|++|+.||.|++||+.+++. +..... |
T Consensus 223 ~~~~~~-----v~~~~~~p~~~-------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------------------~ 272 (447)
T 3dw8_B 223 EELTEV-----ITAAEFHPNSC-------NTFVYSSSKGTIRLCDMRASALCDRHSKLFEE------------------P 272 (447)
T ss_dssp GGCCCC-----EEEEEECSSCT-------TEEEEEETTSCEEEEETTTCSSSCTTCEEECC------------------C
T ss_pred cccCcc-----eEEEEECCCCC-------cEEEEEeCCCeEEEEECcCCccccceeeEecc------------------C
Confidence 011233 44499999863 4799999999999999998775 222111 0
Q ss_pred CCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 290 NLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 290 ~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
...........|...|++++|+ |+|++|++|+. |.|++||+..
T Consensus 273 ~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 273 EDPSNRSFFSEIISSISDVKFS-HSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp -----CCHHHHHTTCEEEEEEC-TTSSEEEEEES-SEEEEEETTC
T ss_pred CCccccccccccCceEEEEEEC-CCCCEEEEeeC-CeEEEEeCCC
Confidence 0000000011234589999999 99999999999 9999999875
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.6e-25 Score=256.68 Aligned_cols=158 Identities=8% Similarity=0.009 Sum_probs=127.9
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEec-------------CCCeEEEEeCCCeEE
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCS-------------VTLNLAIGSSSGLVW 617 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafsp-------------dg~~Lasgs~dG~V~ 617 (1155)
+++|++|+.||+|++||+..........+ .+|..+|++++|+| ++.+|++|+.||.|+
T Consensus 115 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 185 (379)
T 3jrp_A 115 GPLLLVASSDGKVSVVEFKENGTTSPIII---------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 185 (379)
T ss_dssp CSEEEEEETTSEEEEEECCTTSCCCEEEE---------ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEE
T ss_pred CCEEEEecCCCcEEEEecCCCCceeeEEe---------cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEE
Confidence 56899999999999999987742222222 26788999999999 699999999999999
Q ss_pred EEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEecCCccE-
Q 001109 618 LYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF---GARLAVGFECSQVAMLDISTFSV- 693 (1155)
Q Consensus 618 lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd---g~~LAsGs~Dg~V~lWDi~~~~~- 693 (1155)
+||+...... ..+...+.+|.+.|++++|+|+ +++||+|+.||.|+|||+.++..
T Consensus 186 i~d~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 244 (379)
T 3jrp_A 186 IWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 244 (379)
T ss_dssp EEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred EEEecCCCcc---------------------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence 9999865321 1123466789999999999999 89999999999999999998641
Q ss_pred -EEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCce
Q 001109 694 -LFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 694 -l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~ 760 (1155)
.........|..+|.+++|+ ||+++|++++.||.|++||..++..
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~s----------------------~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 245 WKKTLLKEEKFPDVLWRASWS----------------------LSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp CEEEESSSSCCSSCEEEEEEC----------------------SSSCCEEEEESSSSEEEEEEEETTE
T ss_pred ceeeeeccccCCCcEEEEEEc----------------------CCCCEEEEecCCCcEEEEeCCCCCc
Confidence 11122234589999999999 8899999999999999999886543
No 99
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.94 E-value=7.2e-24 Score=252.62 Aligned_cols=269 Identities=16% Similarity=0.197 Sum_probs=203.2
Q ss_pred cEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE
Q 001109 243 SQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY 322 (1155)
Q Consensus 243 ~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~ 322 (1155)
++|++|+.||.|++||+.+++.+.... .|...|++++|+ +..|++|+
T Consensus 130 ~~l~sg~~dg~i~vwd~~~~~~~~~~~------------------------------~h~~~v~~~~~~---~~~l~s~~ 176 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVTGKCLRTLV------------------------------GHTGGVWSSQMR---DNIIISGS 176 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEECC------------------------------CCSSCEEEEEEE---TTEEEEEE
T ss_pred CEEEEEECCCcEEEEECCCCcEEEEEc------------------------------CCCCCEEEEEec---CCEEEEEe
Confidence 679999999999999999998876521 157889999997 67999999
Q ss_pred cCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEcc
Q 001109 323 VDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLN 402 (1155)
Q Consensus 323 ~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~ 402 (1155)
.||+|++||+.++..... ...|..+|..+.|.
T Consensus 177 ~dg~i~vwd~~~~~~~~~----------------~~~h~~~v~~~~~~-------------------------------- 208 (445)
T 2ovr_B 177 TDRTLKVWNAETGECIHT----------------LYGHTSTVRCMHLH-------------------------------- 208 (445)
T ss_dssp TTSCEEEEETTTTEEEEE----------------ECCCSSCEEEEEEE--------------------------------
T ss_pred CCCeEEEEECCcCcEEEE----------------ECCCCCcEEEEEec--------------------------------
Confidence 999999999987532111 01233333333321
Q ss_pred CCcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccc
Q 001109 403 WSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIP 482 (1155)
Q Consensus 403 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~ 482 (1155)
+..+++++.+|.+++||.... .....+.
T Consensus 209 ------------------------------------~~~l~s~s~dg~i~~wd~~~~----------------~~~~~~~ 236 (445)
T 2ovr_B 209 ------------------------------------EKRVVSGSRDATLRVWDIETG----------------QCLHVLM 236 (445)
T ss_dssp ------------------------------------TTEEEEEETTSEEEEEESSSC----------------CEEEEEE
T ss_pred ------------------------------------CCEEEEEeCCCEEEEEECCCC----------------cEEEEEc
Confidence 113556677888899986421 1112223
Q ss_pred cCCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCc
Q 001109 483 TIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGS 562 (1155)
Q Consensus 483 ~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~Dgt 562 (1155)
.|...|+++.+ +++++++|+.||+
T Consensus 237 ~~~~~v~~~~~--------------------------------------------------------~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 237 GHVAAVRCVQY--------------------------------------------------------DGRRVVSGAYDFM 260 (445)
T ss_dssp CCSSCEEEEEE--------------------------------------------------------CSSCEEEEETTSC
T ss_pred CCcccEEEEEE--------------------------------------------------------CCCEEEEEcCCCE
Confidence 34443333322 4557999999999
Q ss_pred EEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEE
Q 001109 563 TRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHI 642 (1155)
Q Consensus 563 VrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~ 642 (1155)
|++||+..+. .+..+. +|..+|.+++| ++.+|++|+.||.|++||+.++.
T Consensus 261 i~iwd~~~~~--~~~~~~---------~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~----------------- 310 (445)
T 2ovr_B 261 VKVWDPETET--CLHTLQ---------GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN----------------- 310 (445)
T ss_dssp EEEEEGGGTE--EEEEEC---------CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-----------------
T ss_pred EEEEECCCCc--EeEEec---------CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-----------------
Confidence 9999998775 233332 67789999999 88999999999999999998743
Q ss_pred ecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccc
Q 001109 643 LPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLT 722 (1155)
Q Consensus 643 ~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~ 722 (1155)
+...+.+|...|.++++ ++++|++|+.||.|++||+.++..+........|..+|.+++|+
T Consensus 311 --------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--------- 371 (445)
T 2ovr_B 311 --------CIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--------- 371 (445)
T ss_dssp --------EEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---------
T ss_pred --------EEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---------
Confidence 23456789999998887 46799999999999999999998887765444589999999996
Q ss_pred cCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 723 ISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 723 ~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
+++|++|+.||+|++||..+|+.+...
T Consensus 372 ---------------~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 372 ---------------KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp ---------------SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ---------------CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 468999999999999999999998776
No 100
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.1e-23 Score=278.44 Aligned_cols=515 Identities=11% Similarity=-0.014 Sum_probs=309.0
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcC------CeEEEEccCCceEEEEcCCCCCE-------EEEEEEcCCcEEEEEecC-
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQD------GRIKVIGGDNIEGLLVSPKQLAF-------KHLEFLQNQGFLVSISSG- 104 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~D------G~I~vw~~~~~~~~~~~~~~~~V-------~~l~Fs~dg~~LvS~s~D- 104 (1155)
.+|++.+.+++|||||++||+++.+ .+|++|+..+.+......+...+ ..++|+|||+.+++++.+
T Consensus 49 t~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~ 128 (1045)
T 1k32_A 49 VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 128 (1045)
T ss_dssp ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred eeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcC
Confidence 5788999999999999999988654 48999999887754444556667 899999999866676644
Q ss_pred -----CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeC------------CCcEEEEEecCCCceeeccceec
Q 001109 105 -----NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDE------------YGMVYVLKYDTEEGKLIHSPYYV 167 (1155)
Q Consensus 105 -----g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~------------dG~V~vw~~d~~~~~l~~~~~~i 167 (1155)
..|.+||+.++........ ....++|+| | +++++.. +...++|..+.. +++.. +
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~l~~~--~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~----l 199 (1045)
T 1k32_A 129 PFSSMTCLYRVENDGINFVPLNLG--PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKK----I 199 (1045)
T ss_dssp SSTTCCEEEEEEGGGTEEEECCSC--SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEE----E
T ss_pred CCcccceEEEEECCCCCeEEecCC--CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCC-CCeEE----C
Confidence 4688888887765432222 345677999 8 8888753 334567765543 33321 1
Q ss_pred cCCceeeeceeEeeEecccccccccccccccceeeecCCCCC-CCcccccccccccceeeEEEEeecccccccccccEEE
Q 001109 168 PKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDE-SGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLL 246 (1155)
Q Consensus 168 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~ll 246 (1155)
..+. .....+.|+++..-.... .+....+|.+.... .......+..+.. .+|+|++ ++|+
T Consensus 200 ~~~~---~~v~~~~~s~d~l~~~~~---~dg~~~l~~~~~~g~~~~~l~~~~~~~~-----~~~SpDG--------~~la 260 (1045)
T 1k32_A 200 VDMS---THVSSPVIVGHRIYFITD---IDGFGQIYSTDLDGKDLRKHTSFTDYYP-----RHLNTDG--------RRIL 260 (1045)
T ss_dssp ECCS---SCCEEEEEETTEEEEEEC---TTSSCEEEEEETTSCSCEECCCCCSSCE-----EEEEESS--------SCEE
T ss_pred cCCC---CcccceEEeCCEEEEEEe---ccCceEEEEEeCCCCcceEecCCCCcce-----eeEcCCC--------CEEE
Confidence 1110 112256677662110000 01112222222111 0011111222223 7899984 4577
Q ss_pred EEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCc
Q 001109 247 LVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGD 326 (1155)
Q Consensus 247 sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~ 326 (1155)
.+ .++.|.+||+....+....+. . . . .......+...+.+++|++|||++||+++ ++.
T Consensus 261 ~~-~~~~i~~~d~~~~~l~~l~~~----~-------~-~--------~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~ 318 (1045)
T 1k32_A 261 FS-KGGSIYIFNPDTEKIEKIEIG----D-------L-E--------SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQ 318 (1045)
T ss_dssp EE-ETTEEEEECTTTCCEEECCCC----C-------C-C--------BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTE
T ss_pred EE-eCCEEEEecCCceEeeeeccC----c-------c-c--------ccccccccccccceeeecCCCCCEEEEEE-cCE
Confidence 76 589999999955544321110 0 0 0 00000123557999999637999999988 889
Q ss_pred EEEEEcCCCCCccccccCCCCCCcccccccCCCCCc-cEEEEEecccCCCCCCCceEEEecCCCCCCcceEE-EEEccCC
Q 001109 327 ILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRL-PVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLT-MLYLNWS 404 (1155)
Q Consensus 327 I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~-pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~lt-vl~l~~~ 404 (1155)
|++|++.++.... + ..+.. .+..+.|+ ++..+++++++ ..+. +++++..
T Consensus 319 i~~~~~~~~~~~~-------------~----~~~~~~~~~~~~~s--------dg~~l~~~s~~----~~l~~~~d~~~~ 369 (1045)
T 1k32_A 319 AFIQDVSGTYVLK-------------V----PEPLRIRYVRRGGD--------TKVAFIHGTRE----GDFLGIYDYRTG 369 (1045)
T ss_dssp EEEECTTSSBEEE-------------C----SCCSCEEEEEECSS--------SEEEEEEEETT----EEEEEEEETTTC
T ss_pred EEEEcCCCCceEE-------------c----cCCCcceEEeeeEc--------CCCeEEEEECC----CceEEEEECCCC
Confidence 9999987653211 0 12233 56677663 34444444432 3444 5554322
Q ss_pred cccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccC
Q 001109 405 SRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTI 484 (1155)
Q Consensus 405 ~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h 484 (1155)
. . ..+. .+...+..+.+.|++. .++....++.+++||..... .......|
T Consensus 370 ~----~---~~l~-~~~~~~~~~~~SpDG~------~la~~~~~~~v~~~d~~tg~----------------~~~~~~~~ 419 (1045)
T 1k32_A 370 K----A---EKFE-ENLGNVFAMGVDRNGK------FAVVANDRFEIMTVDLETGK----------------PTVIERSR 419 (1045)
T ss_dssp C----E---EECC-CCCCSEEEEEECTTSS------EEEEEETTSEEEEEETTTCC----------------EEEEEECS
T ss_pred C----c---eEec-CCccceeeeEECCCCC------EEEEECCCCeEEEEECCCCc----------------eEEeccCC
Confidence 1 0 0111 3445666777766553 77788888999999964110 00000001
Q ss_pred CCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCC---
Q 001109 485 EPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDG--- 561 (1155)
Q Consensus 485 ~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~Dg--- 561 (1155)
... ...+ +|+|+|++|++++.++
T Consensus 420 ~~~-----------------------------------------------------v~~~-~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 420 EAM-----------------------------------------------------ITDF-TISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp SSC-----------------------------------------------------CCCE-EECTTSCEEEEEEEECSST
T ss_pred CCC-----------------------------------------------------ccce-EECCCCCeEEEEecCcccc
Confidence 100 0123 7889999998887754
Q ss_pred -------cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccc----cce
Q 001109 562 -------STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNE----ETL 630 (1155)
Q Consensus 562 -------tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~----~~~ 630 (1155)
+|++||+.++.. ..+. +|...+.+++|+|||++|++++.++..++|+....... ...
T Consensus 446 ~~~~~~~~i~l~d~~~g~~---~~l~---------~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~ 513 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGRKI---FAAT---------TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP 513 (1045)
T ss_dssp TCSCCEEEEEEEETTTTEE---EECS---------CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEE
T ss_pred ccCCCCCeEEEEECCCCcE---EEee---------CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCcee
Confidence 999999988752 2222 45567899999999999999999998888886532110 000
Q ss_pred eee--ccCCceE------------EEecCCCC-CceeEEeecCCCCeEEEEEcCCCCEEEE-------------EeCCCc
Q 001109 631 NLV--TETGKEV------------HILPGGDG-PQCKALFSVLNSPICNLKFSNFGARLAV-------------GFECSQ 682 (1155)
Q Consensus 631 ~~v--~~~~~~~------------~~~~~~~g-~~~~~~l~~h~~~VtslafSpdg~~LAs-------------Gs~Dg~ 682 (1155)
..+ ....... ..+. -+| ......+..|.+.+.+++|+|||+++++ ...+..
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~ 592 (1045)
T 1k32_A 514 FVIPLIPGSPNPTKLVPRSMTSEAGEYD-LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 592 (1045)
T ss_dssp EEEESSTTCCCGGGCCCGGGSCCCCCCC-CTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEE
T ss_pred EEEEeCCCCCCccccCcCcccccccccc-ccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCce
Confidence 000 0000000 0010 111 1123445568889999999999988875 123557
Q ss_pred EEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCc
Q 001109 683 VAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGH 759 (1155)
Q Consensus 683 V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~ 759 (1155)
|.+||+.++...... ..|.+++|| |||+.|++++.| .|++||+.+++
T Consensus 593 l~~~d~~~~~~~~l~-------~~v~~~~~S----------------------~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 593 LLKYDVKTRKVTEVK-------NNLTDLRLS----------------------ADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEETTTCCEEEEE-------EEEEEEEEC----------------------TTSCEEEEEETT-SCEEEEESSCT
T ss_pred EEEEECCCCcEEEee-------cCcceEEEC----------------------CCCCEEEEEcCC-cEEEEeCccCc
Confidence 888999887653211 568899998 999999999877 89999999987
No 101
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=1.5e-24 Score=248.93 Aligned_cols=158 Identities=8% Similarity=0.034 Sum_probs=109.4
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCe----EEEEeCCCeEEEEEeccCcccc
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLN----LAIGSSSGLVWLYNLIKSSNEE 628 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~----Lasgs~dG~V~lwd~~~~~~~~ 628 (1155)
.+++++.|+.+++||+...... ...+.. .+...+.++++.++... +++|+.||.|++|++.......
T Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~ 252 (368)
T 3mmy_A 182 MAVVATAERGLIVYQLENQPSE-FRRIES--------PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK 252 (368)
T ss_dssp EEEEEEGGGCEEEEECSSSCEE-EEECCC--------SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH
T ss_pred eeEEEeCCCcEEEEEeccccch-hhhccc--------cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc
Confidence 4566777888889988765421 111111 22336677777776665 9999999999999998753210
Q ss_pred ceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCee
Q 001109 629 TLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVL 708 (1155)
Q Consensus 629 ~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~ 708 (1155)
.. ..+..............|..+|++++|+|+|++||+|+.||.|+|||+.++.++... .+|..+|.
T Consensus 253 ~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~ 319 (368)
T 3mmy_A 253 DN----------FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS---EQLDQPIS 319 (368)
T ss_dssp HS----------EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC---CCCSSCEE
T ss_pred cc----------eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe---cCCCCCce
Confidence 00 000000000000111234448999999999999999999999999999999887654 46999999
Q ss_pred EEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEE
Q 001109 709 YLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCD 754 (1155)
Q Consensus 709 slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd 754 (1155)
+++|+ |||++|++++.|+..+.|+
T Consensus 320 ~~~~s----------------------~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 320 ACCFN----------------------HNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EEEEC----------------------TTSSCEEEEECCCSTTCGG
T ss_pred EEEEC----------------------CCCCeEEEEeccccccccc
Confidence 99999 8999999999998655554
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.94 E-value=1.1e-24 Score=259.32 Aligned_cols=148 Identities=12% Similarity=0.240 Sum_probs=116.8
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccc
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEET 629 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~ 629 (1155)
+++++++|+.||+|++||+.++.. +..+. +|..+|.+++|+ +.+|++|+.||.|++||+.++.
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~---------~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~---- 327 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEF--VRTLN---------GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA---- 327 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCE--EEEEE---------CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC----
T ss_pred CCCEEEEEeCCCeEEEEECCcCcE--EEEEc---------CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC----
Confidence 556899999999999999988763 33332 677899999994 6799999999999999998743
Q ss_pred eeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCcc---------EEEEeccC
Q 001109 630 LNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFS---------VLFITDSL 700 (1155)
Q Consensus 630 ~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~---------~l~~~~~~ 700 (1155)
+...+.+|...|++++| ++++||+|+.||.|+|||+.++. ++...
T Consensus 328 ---------------------~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--- 381 (435)
T 1p22_A 328 ---------------------CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL--- 381 (435)
T ss_dssp ---------------------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE---
T ss_pred ---------------------EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec---
Confidence 23567889999999999 78999999999999999998765 55543
Q ss_pred CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 701 SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 701 ~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
.+|.++|.+++|. ++.|++++.||+|++||..++......
T Consensus 382 ~~h~~~v~~l~~~------------------------~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 382 VEHSGRVFRLQFD------------------------EFQIVSSSHDDTILIWDFLNDPAAQAE 421 (435)
T ss_dssp CCCSSCCCCEEEC------------------------SSCEEECCSSSEEEEEC----------
T ss_pred cCCCCCeEEEEeC------------------------CCEEEEEeCCCEEEEEECCCCCCcccC
Confidence 5699999999995 567999999999999999887665444
No 103
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=5.9e-24 Score=242.38 Aligned_cols=152 Identities=11% Similarity=0.051 Sum_probs=115.8
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCC-CCeeeeeeeCCCcCccccCCCCCCeEEEEEec-CCCeEEEEeCCCeEEEEEecc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATY-PTLSLIHVFGSELPGIRTATESESVSALEFCS-VTLNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~-~~l~~l~~l~~~~~~i~~~gh~~~V~~lafsp-dg~~Lasgs~dG~V~lwd~~~ 623 (1155)
++++++ +++|+.||.|++||+.. +....... ...|..+|.+++|+| ++++|++|+.||.|++|++..
T Consensus 157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE---------ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp EECSSE--EEEEESTTEEEEEESSCCTTCCCEEE---------ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred EecCCc--EEEEeCCCeEEEEECCccccccceee---------ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 455555 89999999999999987 54211111 125667999999999 999999999999999999987
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEeecC---------CCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEE
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFSVL---------NSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVL 694 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h---------~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l 694 (1155)
..... .......+..| .+.|++++|+|+|++||+|+.||.|++||+.+++.+
T Consensus 226 ~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 226 QGDDY-------------------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp TCCST-------------------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred CCccc-------------------ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence 51000 00011233444 459999999999999999999999999999999887
Q ss_pred EEeccCCCC-CCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCce-EEEEE
Q 001109 695 FITDSLSNS-NSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAH-IVVCD 754 (1155)
Q Consensus 695 ~~~~~~~~h-~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~-I~vwd 754 (1155)
... .+| ..+|.+++ . |+++|++++.||+ .+.+.
T Consensus 287 ~~~---~~~h~~~v~~~~-~-----------------------~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 287 KNF---AKFNEDSVVKIA-C-----------------------SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEC---CCCSSSEEEEEE-E-----------------------CSSEEEEEEECTHHHHCSS
T ss_pred hhh---hcccCCCceEec-C-----------------------CCCeEEEEecCCccccccc
Confidence 654 457 99999988 3 5789999999998 44443
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.4e-26 Score=271.59 Aligned_cols=105 Identities=11% Similarity=0.058 Sum_probs=83.2
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCee-eeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccC
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLS-LIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKS 624 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~-~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~ 624 (1155)
+|+|++ +++++.|++||+||+..+... ...+++ .+|+..|.+++|+ |+.||+++ +|+|++|++.++
T Consensus 189 awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~--------~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 189 VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ--------NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE--------CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred EEcCCc--EEEEeCCCeEEEEECCCCccccceeeec--------ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 556777 788899999999999877621 111221 2677899999999 68999997 699999999874
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEecC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKF--SNFGARLAVGFECSQVAMLDIS 689 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtslaf--Spdg~~LAsGs~Dg~V~lWDi~ 689 (1155)
... ....+|.+.|..|+| +||+..||++++||+ +||...
T Consensus 256 ~~~-------------------------~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 256 SIS-------------------------SLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEE-------------------------EEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred eEE-------------------------EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 320 112289999999999 999999999999999 999876
No 105
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.9e-24 Score=256.40 Aligned_cols=164 Identities=11% Similarity=0.071 Sum_probs=128.5
Q ss_pred cCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcc
Q 001109 547 DYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSN 626 (1155)
Q Consensus 547 ~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~ 626 (1155)
+++++++|++|+.||+|++||+..+.. +..+.. ..|..+|++++|+|++.+|++|+.||.|++||+..+..
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~-------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIRTLER--LQIIEN-------SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETTTCCE--EEEEEC-------CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCee--eEEEcc-------CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 346777999999999999999988763 333331 12667999999999999999999999999999987432
Q ss_pred ccceeeeccCCceEEEecCCCCCceeEEee-cCCCCeEEEEEc----CCCCEEEEEeCCCcEEEEecCCccEEEEecc--
Q 001109 627 EETLNLVTETGKEVHILPGGDGPQCKALFS-VLNSPICNLKFS----NFGARLAVGFECSQVAMLDISTFSVLFITDS-- 699 (1155)
Q Consensus 627 ~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~-~h~~~VtslafS----pdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~-- 699 (1155)
+..+. .|..+|++|+|+ |++++||+|+.||+|+|||+.++.++.....
T Consensus 249 -------------------------~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 303 (437)
T 3gre_A 249 -------------------------IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSD 303 (437)
T ss_dssp -------------------------EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSS
T ss_pred -------------------------EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCC
Confidence 23333 678899999555 5788999999999999999999887765432
Q ss_pred -------------------CCC--CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCC
Q 001109 700 -------------------LSN--SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTG 758 (1155)
Q Consensus 700 -------------------~~~--h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG 758 (1155)
+.+ |..+|.+++|+ ++++|++|+.|++|++||+.+|
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-----------------------~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 304 EQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-----------------------NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp SCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-----------------------TTEEEEEEGGGTEEEEEETTCG
T ss_pred CCCccceecccccccccceecccccCCceEEEEEC-----------------------CceEEEecCCCCeEEEEECCCc
Confidence 011 44556666665 4688999999999999999999
Q ss_pred ceeeeeecc
Q 001109 759 HILFSRSIH 767 (1155)
Q Consensus 759 ~~l~~~~~~ 767 (1155)
+++....-+
T Consensus 361 ~~~~~~~~~ 369 (437)
T 3gre_A 361 SSSKAVISP 369 (437)
T ss_dssp GGCEEEECC
T ss_pred ccceEEecc
Confidence 988777443
No 106
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=8.6e-23 Score=269.97 Aligned_cols=445 Identities=10% Similarity=0.070 Sum_probs=287.3
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC------CeEEEEECCC
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG------NEIQLWDLEA 114 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D------g~I~vWDl~t 114 (1155)
+.+.+...+||| ++||.++. +.|++|+..+.+......|...+.+++|||||.+|+.++.+ .+|.+||+.+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~ 89 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 89 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC
Confidence 456788999996 58888876 79999999877665555677889999999999999988643 3799999998
Q ss_pred CceeeeecCC-Cce-------eEEEEecCCCEEEEEeCC----CcEEEEEecCCCceeeccceeccCCceeeeceeEeeE
Q 001109 115 RRITSTLPWE-SNI-------TAFSVIFGTSYMYIGDEY----GMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEF 182 (1155)
Q Consensus 115 ~~~~~~l~~~-~~V-------tsva~spd~~~l~~G~~d----G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~ 182 (1155)
++ ...+..+ ..+ .+++|+|||+++++++.+ +...+|.++...+.... +..
T Consensus 90 g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~------------- 151 (1045)
T 1k32_A 90 GE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNL------------- 151 (1045)
T ss_dssp TE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCS-------------
T ss_pred CC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecC-------------
Confidence 87 4455554 456 899999999988887755 55566666665443220 000
Q ss_pred ecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEc------------
Q 001109 183 CPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYA------------ 250 (1155)
Q Consensus 183 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~------------ 250 (1155)
.+... +.|+| + . ++++..
T Consensus 152 -----------------------------------~~~~~-----~~~sp-G-~--------l~~~~~~~~~~~~~~~~g 181 (1045)
T 1k32_A 152 -----------------------------------GPATH-----ILFAD-G-R--------RVIGRNTFELPHWKGYRG 181 (1045)
T ss_dssp -----------------------------------CSCSE-----EEEET-T-E--------EEEEESCSCCTTSTTCCS
T ss_pred -----------------------------------CCcce-----eeeCC-C-E--------EEEeccCCCccccccccC
Confidence 01112 45665 2 2 555442
Q ss_pred CCeEEEEEccC-CeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEE
Q 001109 251 NGLIILWDVSE-DKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILL 329 (1155)
Q Consensus 251 dG~I~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~l 329 (1155)
+....||.... ++..... .|...+.+++|+ ++ ..++++..||.+.+
T Consensus 182 ~~~~~lw~~~~~~~~~~l~-------------------------------~~~~~v~~~~~s-~d-~l~~~~~~dg~~~l 228 (1045)
T 1k32_A 182 GTRGKIWIEVNSGAFKKIV-------------------------------DMSTHVSSPVIV-GH-RIYFITDIDGFGQI 228 (1045)
T ss_dssp TTCCEEEEEEETTEEEEEE-------------------------------CCSSCCEEEEEE-TT-EEEEEECTTSSCEE
T ss_pred CCcCCEEEECCCCCeEECc-------------------------------CCCCcccceEEe-CC-EEEEEEeccCceEE
Confidence 23456665332 3333221 146789999999 77 67778888999999
Q ss_pred EEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCccccc
Q 001109 330 WNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIES 409 (1155)
Q Consensus 330 Wd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~ 409 (1155)
|.+....... ..+ . .+. .+....|++ +++.++++.+ ..+.++++... ....
T Consensus 229 ~~~~~~g~~~-----------~~l--~--~~~-~~~~~~~Sp-------DG~~la~~~~-----~~i~~~d~~~~-~l~~ 279 (1045)
T 1k32_A 229 YSTDLDGKDL-----------RKH--T--SFT-DYYPRHLNT-------DGRRILFSKG-----GSIYIFNPDTE-KIEK 279 (1045)
T ss_dssp EEEETTSCSC-----------EEC--C--CCC-SSCEEEEEE-------SSSCEEEEET-----TEEEEECTTTC-CEEE
T ss_pred EEEeCCCCcc-----------eEe--c--CCC-CcceeeEcC-------CCCEEEEEeC-----CEEEEecCCce-Eeee
Confidence 9876421100 011 0 111 123446664 3343444432 34555544111 0000
Q ss_pred ceec----eeeeecCCCceeEEEEe-cCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccC
Q 001109 410 LKCI----GRVDLERKGSFVDMVLL-PNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTI 484 (1155)
Q Consensus 410 ~~~~----~~~~l~~~~~v~d~~~~-~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h 484 (1155)
+... ......+...+..+.+. |++. .++... .+.+++|+..... ...+..|
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~------~la~~~-~~~i~~~~~~~~~-----------------~~~~~~~ 335 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGD------LIAFVS-RGQAFIQDVSGTY-----------------VLKVPEP 335 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGG------CEEEEE-TTEEEEECTTSSB-----------------EEECSCC
T ss_pred eccCcccccccccccccccceeeecCCCCC------EEEEEE-cCEEEEEcCCCCc-----------------eEEccCC
Confidence 0000 00001122346667776 6542 344433 6788887743100 0000001
Q ss_pred CCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEE
Q 001109 485 EPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTR 564 (1155)
Q Consensus 485 ~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVr 564 (1155)
.. . ....+ .|+ +++.|++++.++.+.
T Consensus 336 ~~-~---------------------------------------------------~~~~~-~~s-dg~~l~~~s~~~~l~ 361 (1045)
T 1k32_A 336 LR-I---------------------------------------------------RYVRR-GGD-TKVAFIHGTREGDFL 361 (1045)
T ss_dssp SC-E---------------------------------------------------EEEEE-CSS-SEEEEEEEETTEEEE
T ss_pred Cc-c---------------------------------------------------eEEee-eEc-CCCeEEEEECCCceE
Confidence 10 0 00112 677 888899998888888
Q ss_pred -EEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEe
Q 001109 565 -IWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHIL 643 (1155)
Q Consensus 565 -lWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~ 643 (1155)
+||+.++.... + .+|...+.+++|+|||++||+++.++.|++||+.++..
T Consensus 362 ~~~d~~~~~~~~---l---------~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~----------------- 412 (1045)
T 1k32_A 362 GIYDYRTGKAEK---F---------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP----------------- 412 (1045)
T ss_dssp EEEETTTCCEEE---C---------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------
T ss_pred EEEECCCCCceE---e---------cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce-----------------
Confidence 88988775321 1 14556899999999999999999999999999987532
Q ss_pred cCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCC----------cEEEEecCCccEEEEeccCCCCCCCeeEEEEe
Q 001109 644 PGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECS----------QVAMLDISTFSVLFITDSLSNSNSPVLYLAVK 713 (1155)
Q Consensus 644 ~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg----------~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs 713 (1155)
...+.+|.+.|.+++|||||++||+++.++ .|++||+.++.. .. +..|...+.+++|+
T Consensus 413 --------~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-~~---l~~~~~~~~~~~~s 480 (1045)
T 1k32_A 413 --------TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FA---ATTENSHDYAPAFD 480 (1045)
T ss_dssp --------EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-EE---CSCSSSBEEEEEEC
T ss_pred --------EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-EE---eeCCCcccCCceEc
Confidence 133457889999999999999999988754 899999998863 32 35688889999999
Q ss_pred ecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCc
Q 001109 714 SLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGH 759 (1155)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~ 759 (1155)
|||+.|++++.++...+|+.....
T Consensus 481 ----------------------pdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 481 ----------------------ADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp ----------------------TTSCEEEEEESCCCCCEECSSSSC
T ss_pred ----------------------CCCCEEEEEecccCCcCcchhccc
Confidence 899999999999999999976543
No 107
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=8.2e-25 Score=249.08 Aligned_cols=258 Identities=16% Similarity=0.131 Sum_probs=178.0
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce--EEEE-cCCCCCEEEEEEEc--CCcEEEEEecCCeEEEEEC
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE--GLLV-SPKQLAFKHLEFLQ--NQGFLVSISSGNEIQLWDL 112 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~--~~~~-~~~~~~V~~l~Fs~--dg~~LvS~s~Dg~I~vWDl 112 (1155)
..||.+.|++++|+|+|++||+|+.||+|+||+..+.. .+.. ..|..+|.+|+|++ ++.+|++++.|++|++||+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 46999999999999999999999999999999986543 2222 35788999999986 3789999999999999999
Q ss_pred CCCc--eeeeecCC-CceeEEEEecC--CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccc
Q 001109 113 EARR--ITSTLPWE-SNITAFSVIFG--TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHI 187 (1155)
Q Consensus 113 ~t~~--~~~~l~~~-~~Vtsva~spd--~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~ 187 (1155)
+++. ...++..| ..|++++|+|+ +.+|++|+.||+|++|++......... .....
T Consensus 89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~--~~~~~------------------ 148 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK--KINNA------------------ 148 (316)
T ss_dssp SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC--CBTTS------------------
T ss_pred CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee--eeecc------------------
Confidence 9874 55666666 78999999998 789999999999999987653211000 00000
Q ss_pred cccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccc---------ccccccccEEEEEEcCCeEEEEE
Q 001109 188 QREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKH---------VNSTLGFSQLLLVYANGLIILWD 258 (1155)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~---------~~~~~~~~~llsg~~dG~I~lWd 258 (1155)
+...+.. +.|+|+.. +......++|++|+.||.|+|||
T Consensus 149 ----------------------------h~~~v~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd 195 (316)
T 3bg1_A 149 ----------------------------HTIGCNA-----VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK 195 (316)
T ss_dssp ----------------------------SSSCBCC-----CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEE
T ss_pred ----------------------------ccCCcce-----EEEccccCCccccccccccCccccceEEEecCCCeEEEEE
Confidence 0111222 44444310 00000015799999999999999
Q ss_pred ccCCe---EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCC----CeEEEEEcCCcEEEEE
Q 001109 259 VSEDK---VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDG----SVLAVGYVDGDILLWN 331 (1155)
Q Consensus 259 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG----~~lasg~~DG~I~lWd 331 (1155)
+.++. .+.. +. .|...|.+++|+ |++ .+||+|+.||+|++|+
T Consensus 196 ~~~~~~~~~~~~-------l~-----------------------~h~~~V~~v~~s-p~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 196 EEEDGQWKEEQK-------LE-----------------------AHSDWVRDVAWA-PSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ECTTSCEEEEEC-------CB-----------------------CCSSCEEEEECC-CCSSCSCCEEEEEETTCEEEEEE
T ss_pred eCCCCccceeee-------cc-----------------------cCCCceEEEEec-CCCCCCCceEEEEcCCCeEEEEE
Confidence 97542 2221 11 257889999999 886 8999999999999999
Q ss_pred cCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEcc
Q 001109 332 LRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLN 402 (1155)
Q Consensus 332 ~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~ 402 (1155)
+.+...... ..++ + ..+..+|..++|++ ++.++++++.| +.+.+|...
T Consensus 245 ~~~~~~~~~---------~~~~-~--~~~~~~v~~v~~sp-------~g~~las~~~D----~~v~lw~~~ 292 (316)
T 3bg1_A 245 CDDASSNTW---------SPKL-L--HKFNDVVWHVSWSI-------TANILAVSGGD----NKVTLWKES 292 (316)
T ss_dssp CSSTTCCCC---------BCCE-E--EECSSCEEEEEECT-------TTCCEEEEESS----SCEEEEEEC
T ss_pred ccCccccch---------hhhh-h--hcCCCcEEEEEEcC-------CCCEEEEEcCC----CeEEEEEEC
Confidence 876321100 0000 1 13567899999975 45566666654 668887654
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=6.3e-24 Score=246.11 Aligned_cols=122 Identities=11% Similarity=0.047 Sum_probs=96.5
Q ss_pred CCCCCeEEEEEecCCCeEEEEeCCCe-EEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEee-c-CCCCeEEEE
Q 001109 590 TESESVSALEFCSVTLNLAIGSSSGL-VWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFS-V-LNSPICNLK 666 (1155)
Q Consensus 590 gh~~~V~~lafspdg~~Lasgs~dG~-V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~-~-h~~~Vtsla 666 (1155)
+|..+|++++|+|+|++||+|+.||+ |++||+.++.. +..+. + |.+.|++|+
T Consensus 193 ~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~-------------------------~~~~~~g~h~~~v~~~~ 247 (355)
T 3vu4_A 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL-------------------------VREFRRGLDRADVVDMK 247 (355)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE-------------------------EEEEECTTCCSCEEEEE
T ss_pred ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE-------------------------EEEEEcCCCCCcEEEEE
Confidence 78899999999999999999999998 99999987432 24555 5 999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCccEEEEe--------------------ccCCCCCCCeeEEEEeecCCCCccccCCC
Q 001109 667 FSNFGARLAVGFECSQVAMLDISTFSVLFIT--------------------DSLSNSNSPVLYLAVKSLSDTSNLTISPK 726 (1155)
Q Consensus 667 fSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~--------------------~~~~~h~~~V~slafs~~~~~~~~~~~~~ 726 (1155)
|+|||++||+|+.||+|+|||+..+...... ....++..+...++|+
T Consensus 248 ~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~------------- 314 (355)
T 3vu4_A 248 WSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI------------- 314 (355)
T ss_dssp ECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES-------------
T ss_pred ECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe-------------
Confidence 9999999999999999999999765321100 0001112233556666
Q ss_pred CCCCCCCCCCCCcEEEEEeCCceEEEEECCCC
Q 001109 727 DSDINSSNDTKKETLFFMTKDAHIVVCDSTTG 758 (1155)
Q Consensus 727 ~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG 758 (1155)
+|++.|++++.||.+.+|+...+
T Consensus 315 ---------~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 315 ---------SESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ---------SSSEEEEEETTTTEEEEEEEEEE
T ss_pred ---------CCCCEEEEEeCCCeEEEEEEEcC
Confidence 89999999999999999997653
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.7e-24 Score=244.66 Aligned_cols=152 Identities=10% Similarity=0.092 Sum_probs=109.1
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
+|+|++++|++|+.||+|++||+..+.... ..+. .+|..+|++|+|+|++.+|++|+ ++.|++||+....
T Consensus 177 ~~~pdg~~lasg~~dg~i~iwd~~~~~~~~-~~~~--------~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 177 VLHKDSLLLALYSPDGILDVYNLSSPDQAS-SRFP--------VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV 246 (343)
T ss_dssp EECTTSCEEEEECTTSCEEEEESSCTTSCC-EECC--------CCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCCCCc-cEEe--------ccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence 556788899999999999999998876310 2222 13888999999999999999999 5599999998754
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCe--EEEEEcCCCCEEEEEeC-CCcEEEEecCCccEEEEeccCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPI--CNLKFSNFGARLAVGFE-CSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~V--tslafSpdg~~LAsGs~-Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
....+ ..+..|...+ .+++|+|+|++||+|+. |+.|+||++......+..
T Consensus 247 ~~~~~----------------------~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----- 299 (343)
T 3lrv_A 247 GTLAY----------------------PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----- 299 (343)
T ss_dssp TCBSS----------------------CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----
T ss_pred cceee----------------------cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----
Confidence 32110 1112233333 57999999999999998 999999999765433321
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
.++..++|.+.. .+.+.|++++.|+.++++-.
T Consensus 300 --~~~~~~~~~~~~-------------------~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 300 --DEESALCLQSDT-------------------ADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp --EEEEECCC-----------------------CCCCEEEEEEETTEEEEEEE
T ss_pred --cCceeEecCccc-------------------cccceeEEEecCCceEEEEe
Confidence 456677776211 26788999999999998863
No 110
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-23 Score=243.25 Aligned_cols=256 Identities=14% Similarity=0.161 Sum_probs=189.0
Q ss_pred ccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccC--CceEEEEc-CCCCCEEEEEEEcC--CcEEEEEecCCeEEEEEC
Q 001109 38 HYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGD--NIEGLLVS-PKQLAFKHLEFLQN--QGFLVSISSGNEIQLWDL 112 (1155)
Q Consensus 38 ~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~--~~~~~~~~-~~~~~V~~l~Fs~d--g~~LvS~s~Dg~I~vWDl 112 (1155)
..||.+.|++++|+|+|++||+|+.||.|+||+.. ....+... .|..+|.+++|+++ +.+|++++.|++|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 36999999999999999999999999999999986 33443333 57889999999977 899999999999999999
Q ss_pred CCCc--eeeeecCC-CceeEEEEecC--CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccc
Q 001109 113 EARR--ITSTLPWE-SNITAFSVIFG--TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHI 187 (1155)
Q Consensus 113 ~t~~--~~~~l~~~-~~Vtsva~spd--~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~ 187 (1155)
.+++ .+..+..+ ..|++++|+|+ +.++++|+.||.|++|++........ ..+..
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~---~~~~~------------------ 145 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP---IIIDA------------------ 145 (379)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE---EEEEC------------------
T ss_pred CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee---EEecC------------------
Confidence 9987 56666655 78999999999 99999999999999998765421110 00000
Q ss_pred cccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecc-----------cccccccccEEEEEEcCCeEEE
Q 001109 188 QREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQK-----------HVNSTLGFSQLLLVYANGLIIL 256 (1155)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~-----------~~~~~~~~~~llsg~~dG~I~l 256 (1155)
+...+.+ +.|+|.. ++ +.|++++.||.|++
T Consensus 146 ----------------------------~~~~v~~-----~~~~~~~~~~~~~~~~~~~~------~~l~~~~~dg~i~i 186 (379)
T 3jrp_A 146 ----------------------------HAIGVNS-----ASWAPATIEEDGEHNGTKES------RKFVTGGADNLVKI 186 (379)
T ss_dssp ----------------------------CTTCEEE-----EEECCCC----------CTT------CEEEEEETTSCEEE
T ss_pred ----------------------------CCCceEE-----EEEcCccccccccccCCCCC------CEEEEEeCCCeEEE
Confidence 1222333 7777731 13 68999999999999
Q ss_pred EEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecC---CCeEEEEEcCCcEEEEEcC
Q 001109 257 WDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASND---GSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 257 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pd---G~~lasg~~DG~I~lWd~~ 333 (1155)
||+.++........ .+. .|...|++++|+ |+ +.+|++|+.||.|++||+.
T Consensus 187 ~d~~~~~~~~~~~~---~~~-----------------------~h~~~v~~~~~s-p~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 187 WKYNSDAQTYVLES---TLE-----------------------GHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp EEEETTTTEEEEEE---EEC-----------------------CCSSCEEEEEEC-CCCSSSEEEEEEETTSCEEEEEES
T ss_pred EEecCCCcceeeEE---EEe-----------------------cccCcEeEEEEC-CCCCCCCeEEEEeCCCEEEEEeCC
Confidence 99987642211000 011 157889999999 99 8999999999999999998
Q ss_pred CCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEcc
Q 001109 334 AAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLN 402 (1155)
Q Consensus 334 s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~ 402 (1155)
++..... ...+....+..+|..+.|++ ++.++++++.+ ..+.+|+++
T Consensus 240 ~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~-------~g~~l~~~~~d----g~i~iw~~~ 286 (379)
T 3jrp_A 240 NEQGPWK-----------KTLLKEEKFPDVLWRASWSL-------SGNVLALSGGD----NKVTLWKEN 286 (379)
T ss_dssp STTSCCE-----------EEESSSSCCSSCEEEEEECS-------SSCCEEEEESS----SSEEEEEEE
T ss_pred CCCccce-----------eeeeccccCCCcEEEEEEcC-------CCCEEEEecCC----CcEEEEeCC
Confidence 7642111 11122334677899999975 44455555543 568887664
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=1.1e-23 Score=243.98 Aligned_cols=209 Identities=11% Similarity=0.126 Sum_probs=140.9
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEE-EEecCCeEEEEECCCCce
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLV-SISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~Lv-S~s~Dg~I~vWDl~t~~~ 117 (1155)
.+|.+.|++++|+|||++||+|+.|| ++||+....+........ .+..+.|.+++..++ +++.|++|+|||+.++++
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 68899999999999999999998876 789998877766544322 477888998888774 566789999999999999
Q ss_pred eeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccc
Q 001109 118 TSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFN 197 (1155)
Q Consensus 118 ~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 197 (1155)
+..+..++.|.+++++++. ++++ .++.|++|++.... +.. ..+.
T Consensus 94 ~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~-~~~--------~~~~------------------------ 137 (355)
T 3vu4_A 94 VSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPW-KRI--------TDDI------------------------ 137 (355)
T ss_dssp EEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTC-CBS--------SCCE------------------------
T ss_pred EEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCc-eee--------EEec------------------------
Confidence 9999888999999998764 4444 37789999766531 110 0000
Q ss_pred cceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEE--EEcCCeEEEEEccCCeEEEEeccccccc
Q 001109 198 ASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLL--VYANGLIILWDVSEDKVVLVRGSKDLQL 275 (1155)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~lls--g~~dG~I~lWd~~~~~~~~~~~~~~~~~ 275 (1155)
. + ...++++|. .+++ |+.||.|++||+.+++....... ..
T Consensus 138 -------------------~-~-----~~~~~~s~~----------~la~~sg~~~g~v~iwd~~~~~~~~~~~~---~~ 179 (355)
T 3vu4_A 138 -------------------R-F-----GGVCEFSNG----------LLVYSNEFNLGQIHITKLQSSGSATTQDQ---GV 179 (355)
T ss_dssp -------------------E-E-----EEEEEEETT----------EEEEEESSCTTCEEEEECCC--------------
T ss_pred -------------------c-C-----CceEEEEcc----------EEEEeCCCcCcEEEEEECCCCCccccccc---cc
Confidence 0 0 011455652 3555 57899999999987652211000 00
Q ss_pred ccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCc-EEEEEcCCC
Q 001109 276 KTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGD-ILLWNLRAA 335 (1155)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~-I~lWd~~s~ 335 (1155)
.. ....+ .......|...|++++|+ |||++||+|+.||+ |++||+.++
T Consensus 180 ~~----------~~~~p-~~~~~~~h~~~v~~~~~s-~~g~~l~s~s~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 180 QQ----------KAILG-KGVLIKAHTNPIKMVRLN-RKSDMVATCSQDGTIIRVFKTEDG 228 (355)
T ss_dssp ------------------CCEEECCCSSCEEEEEEC-TTSSEEEEEETTCSEEEEEETTTC
T ss_pred cc----------cccCc-ccEEEEccCCceEEEEEC-CCCCEEEEEeCCCCEEEEEECCCC
Confidence 00 00000 000011268899999999 99999999999999 999998754
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=2.5e-23 Score=247.38 Aligned_cols=150 Identities=19% Similarity=0.217 Sum_probs=123.2
Q ss_pred cCcEEEEEECCCcEEEEeCCCCC-eeeeeeeCCCcCccccCCCCCCeEEEEEecCCC-eEEEEeCCCeEEEEEeccCccc
Q 001109 550 VERLYIAGYRDGSTRIWDATYPT-LSLIHVFGSELPGIRTATESESVSALEFCSVTL-NLAIGSSSGLVWLYNLIKSSNE 627 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~-l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~-~Lasgs~dG~V~lwd~~~~~~~ 627 (1155)
++.+|++|+.||.|++||+..+. ..++..+ ..|..+|++++|+|++. +||+|+.||.|++||+.....
T Consensus 243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~- 312 (430)
T 2xyi_A 243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTV---------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL- 312 (430)
T ss_dssp CTTEEEEEETTSEEEEEETTCSCSSSCSEEE---------ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-
T ss_pred CCCEEEEEeCCCeEEEEECCCCCCCcceeEe---------ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-
Confidence 34589999999999999998762 1122222 26778999999999998 689999999999999986321
Q ss_pred cceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEecCC--------------cc
Q 001109 628 ETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGA-RLAVGFECSQVAMLDIST--------------FS 692 (1155)
Q Consensus 628 ~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~-~LAsGs~Dg~V~lWDi~~--------------~~ 692 (1155)
++..+..|.+.|++|+|+|+++ +||+|+.||.|+|||+.. +.
T Consensus 313 -----------------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 369 (430)
T 2xyi_A 313 -----------------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 369 (430)
T ss_dssp -----------------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTT
T ss_pred -----------------------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcc
Confidence 2356678999999999999996 699999999999999987 34
Q ss_pred EEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCc-EEEEEeCCceEEEEECCC
Q 001109 693 VLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKE-TLFFMTKDAHIVVCDSTT 757 (1155)
Q Consensus 693 ~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~-~L~s~s~Dg~I~vwd~~t 757 (1155)
++.. ..+|..+|.+++|+ |+++ +|++++.|+.|+||++.+
T Consensus 370 ~~~~---~~~h~~~v~~~~~~----------------------p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 370 LLFI---HGGHTAKISDFSWN----------------------PNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEE---CCCCSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEECH
T ss_pred eEEE---cCCCCCCceEEEEC----------------------CCCCCEEEEEECCCCEEEeEccc
Confidence 4443 35699999999999 7788 899999999999999875
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=3.4e-24 Score=251.85 Aligned_cols=160 Identities=13% Similarity=-0.019 Sum_probs=122.2
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCC-eEEEEEecCCCeEEEE---eCCCeEEEEEe
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESES-VSALEFCSVTLNLAIG---SSSGLVWLYNL 621 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~-V~~lafspdg~~Lasg---s~dG~V~lwd~ 621 (1155)
+++|++++|++|+.||+|++||+..+.. +..+. .+|... +.+++|+|++++|++| +.||.|++||+
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPRKGTV--VAEKD--------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTTTEE--EEEEE--------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred EECCCCCEEEEEecCCcEEEEeCCCCce--eeeec--------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence 5667788999999999999999988763 23331 145444 8999999999999999 79999999999
Q ss_pred ccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEecCCccE-EEEecc
Q 001109 622 IKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLA-VGFECSQVAMLDISTFSV-LFITDS 699 (1155)
Q Consensus 622 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LA-sGs~Dg~V~lWDi~~~~~-l~~~~~ 699 (1155)
....... . .....|...|.+++|+|+|++|+ +|+.||.|++||+.++.. +.....
T Consensus 253 ~~~~~~~----------------------~-~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 253 KHLEEPL----------------------S-LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp TBCSSCS----------------------E-EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE
T ss_pred ccccCCc----------------------e-EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc
Confidence 8743210 0 11124778899999999999986 566899999999998773 333322
Q ss_pred CCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeee
Q 001109 700 LSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFS 763 (1155)
Q Consensus 700 ~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~ 763 (1155)
. .|..+|.+++|+ |++.+++ +.|+.+++|++.++++...
T Consensus 310 ~-~~~~~v~~~~~s----------------------p~~~~~~--s~~~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 310 F-SSKESQRGMGYM----------------------PKRGLEV--NKCEIARFYKLHERKCEPI 348 (402)
T ss_dssp E-CCSSCCSEEEEC----------------------CGGGSCG--GGTEEEEEEEEETTEEEEE
T ss_pred c-ccCCcccceEEe----------------------cccccce--ecceeEEEEEcCCCcEEEE
Confidence 1 267999999999 7787776 4678999999998776443
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=2.6e-22 Score=233.92 Aligned_cols=170 Identities=11% Similarity=0.032 Sum_probs=110.6
Q ss_pred cCCcCcE-EEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEe---CCCeEEEEEec
Q 001109 547 DYLVERL-YIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGS---SSGLVWLYNLI 622 (1155)
Q Consensus 547 ~s~~~~l-LaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs---~dG~V~lwd~~ 622 (1155)
++|+++. +++++.|++|++||+..+... ..+ .+...+.+++|+|++++|++++ .++.|++||+.
T Consensus 165 ~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~----------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 165 VTPDGTKVYVANFDSMSISVIDTVTNSVI--DTV----------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEE--EEE----------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCeEE--EEE----------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 3455544 478888999999999887632 222 1234789999999999999988 68999999997
Q ss_pred cCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEecCCccEEEEeccCC
Q 001109 623 KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARL-AVGFECSQVAMLDISTFSVLFITDSLS 701 (1155)
Q Consensus 623 ~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~L-AsGs~Dg~V~lWDi~~~~~l~~~~~~~ 701 (1155)
.+.. ...+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++++.....
T Consensus 233 ~~~~-------------------------~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~-- 284 (391)
T 1l0q_A 233 TNKI-------------------------TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV-- 284 (391)
T ss_dssp TTEE-------------------------EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--
T ss_pred CCeE-------------------------EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC--
Confidence 6432 12334443 57899999999987 6778999999999999988766543
Q ss_pred CCCCCee---EEEEeecCCCCc-cccCCCCCCCCCCCCCCC--cEEEEEeCCceEEEEECCCCce
Q 001109 702 NSNSPVL---YLAVKSLSDTSN-LTISPKDSDINSSNDTKK--ETLFFMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 702 ~h~~~V~---slafs~~~~~~~-~~~~~~~~~~~~~~~pd~--~~L~s~s~Dg~I~vwd~~tG~~ 760 (1155)
|..+.. .+.+.+.+.... ..++... .....|.. ..+...+.|.++++||..+|..
T Consensus 285 -~~~~~~~~~~~~~~~~~~~~~~a~fs~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 285 -GKNPYASGQFIGSIPVQPVYPSADFKSNI---TSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp -SSSEECCSSCEEECSSCCCCCBCCEEESC---CSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred -CcCCCccceeeeccccccccccccccccc---ccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 443321 133322110000 0000000 00001112 4567778899999999988875
No 115
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.91 E-value=3e-23 Score=243.87 Aligned_cols=202 Identities=11% Similarity=0.128 Sum_probs=154.2
Q ss_pred CCceEEEEcCCCC-EEEEEEcCCeEEEEccCCceEE-----EEcCCCCCEEEEEEEc-CCcEEEEEecCCeEEEEECCCC
Q 001109 43 STASILAFDHVQS-LLAIGTQDGRIKVIGGDNIEGL-----LVSPKQLAFKHLEFLQ-NQGFLVSISSGNEIQLWDLEAR 115 (1155)
Q Consensus 43 ~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~~~~-----~~~~~~~~V~~l~Fs~-dg~~LvS~s~Dg~I~vWDl~t~ 115 (1155)
.....++++|+.. ++++|+.||.|+||+....... ....|..+|.+++|+| ++.+|++++.|++|+|||+.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 4566799999875 4556889999999997543221 1234788999999999 8899999999999999999988
Q ss_pred -------ceeeeecCC-CceeEEEEecCC-CEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 116 -------RITSTLPWE-SNITAFSVIFGT-SYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 116 -------~~~~~l~~~-~~Vtsva~spd~-~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
+.+..+..| ..|++++|+|++ ++|++|+.||+|++|++... +.. ..+..
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--~~~---~~~~~----------------- 172 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--AAV---LTLGP----------------- 172 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--EEE---EEECT-----------------
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--Ccc---EEEec-----------------
Confidence 556777766 789999999998 69999999999999976542 221 00000
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEE
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVL 266 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~ 266 (1155)
.+ +...+. +++|+|++ ++|++++.||.|++||+.+++.+.
T Consensus 173 ----~~-----------------------~~~~v~-----~~~~~~~~--------~~l~~~~~d~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 173 ----DV-----------------------HPDTIY-----SVDWSRDG--------ALICTSCRDKRVRVIEPRKGTVVA 212 (402)
T ss_dssp ----TT-----------------------CCSCEE-----EEEECTTS--------SCEEEEETTSEEEEEETTTTEEEE
T ss_pred ----CC-----------------------CCCceE-----EEEECCCC--------CEEEEEecCCcEEEEeCCCCceee
Confidence 00 123344 49999974 579999999999999999998876
Q ss_pred EecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEE---EcCCcEEEEEcCCC
Q 001109 267 VRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVG---YVDGDILLWNLRAA 335 (1155)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg---~~DG~I~lWd~~s~ 335 (1155)
... . +| ....+.+++|+ |+|.+|++| +.||.|++||+.+.
T Consensus 213 ~~~------~-----------~~-----------~~~~~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 213 EKD------R-----------PH-----------EGTRPVHAVFV-SEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp EEE------C-----------SS-----------CSSSCCEEEEC-STTEEEEEEECTTCCEEEEEEETTBC
T ss_pred eec------c-----------CC-----------CCCcceEEEEc-CCCcEEEEeccCCCCceEEEEcCccc
Confidence 520 0 01 12348899999 999999999 78999999998653
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=6.4e-23 Score=241.03 Aligned_cols=134 Identities=9% Similarity=0.026 Sum_probs=85.6
Q ss_pred CCCCCeEEEEEe-cCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEc
Q 001109 590 TESESVSALEFC-SVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFS 668 (1155)
Q Consensus 590 gh~~~V~~lafs-pdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafS 668 (1155)
+|...|.+++|+ ||+++|++++.|+++++||+........+... ...+..+.. .........+...+.++.+.
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS---TMKLGPKNL---LPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CC---SCSEEEECSSCCSSCCEECS
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee---cCccccEEE---ccccccccccCcceeEEEcc
Confidence 677899999997 89999999999999999999875432111000 000000000 00011222333344444443
Q ss_pred C-CCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCC
Q 001109 669 N-FGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKD 747 (1155)
Q Consensus 669 p-dg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~D 747 (1155)
+ ++.++|+|+.||+|+|||+.++..+... .+|..+|.+|+|+ |||++|++++.|
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~---~~~~~~V~svafs----------------------pdG~~LA~as~~ 380 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIP---IQLGMPIVDFCWH----------------------QDGSHLAIATEG 380 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEE---EECSSCEEEEEEC----------------------TTSSEEEEEESS
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEe---cCCCCcEEEEEEc----------------------CCCCEEEEEeCC
Confidence 3 4446788999999999999998776543 3588999999999 999999999987
Q ss_pred ceEEEEEC
Q 001109 748 AHIVVCDS 755 (1155)
Q Consensus 748 g~I~vwd~ 755 (1155)
| +.+|.+
T Consensus 381 G-v~lvrL 387 (393)
T 4gq1_A 381 S-VLLTRL 387 (393)
T ss_dssp E-EEEEEE
T ss_pred C-eEEEEE
Confidence 7 555553
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.9e-23 Score=245.51 Aligned_cols=163 Identities=9% Similarity=0.067 Sum_probs=119.4
Q ss_pred CCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc---eeeeecCC------------------------------------
Q 001109 84 LAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR---ITSTLPWE------------------------------------ 124 (1155)
Q Consensus 84 ~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~---~~~~l~~~------------------------------------ 124 (1155)
.++.+++|+++|.+|+++ .++.|++||+.+++ .+.++..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999855554 68899999999998 66655422
Q ss_pred -------------------CceeEEEEecCCCEE-EEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEec
Q 001109 125 -------------------SNITAFSVIFGTSYM-YIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCP 184 (1155)
Q Consensus 125 -------------------~~Vtsva~spd~~~l-~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p 184 (1155)
+.|++++|+|++++| ++|+.||+|++|+++...++... .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~---~~~---------------- 144 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLK---LRK---------------- 144 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEE---EEE----------------
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceee---eee----------------
Confidence 159999999999996 89999999999988732222110 000
Q ss_pred ccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeE
Q 001109 185 NHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKV 264 (1155)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~ 264 (1155)
. ..+... |.+++|+|++ ++|++|+.+|.|++|++.+++.
T Consensus 145 -------~---------------------~~~~~~-----v~~~~~sp~~--------~~l~~~~~~g~v~~~~~~~~~~ 183 (450)
T 2vdu_B 145 -------R---------------------FCFSKR-----PNAISIAEDD--------TTVIIADKFGDVYSIDINSIPE 183 (450)
T ss_dssp -------E---------------------EECSSC-----EEEEEECTTS--------SEEEEEETTSEEEEEETTSCCC
T ss_pred -------c---------------------ccCCCC-----ceEEEEcCCC--------CEEEEEeCCCcEEEEecCCccc
Confidence 0 001122 3349999974 5799999999999999987654
Q ss_pred EE-EecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecC---CCeEEEEEcCCcEEEEEcCCC
Q 001109 265 VL-VRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASND---GSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 265 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pd---G~~lasg~~DG~I~lWd~~s~ 335 (1155)
.. ... .+ ..|...|++++|+ |+ +++|++|+.||.|++||+.++
T Consensus 184 ~~~~~~----~~-----------------------~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 184 EKFTQE----PI-----------------------LGHVSMLTDVHLI-KDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp SSCCCC----CS-----------------------EECSSCEEEEEEE-ECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred ccccce----ee-----------------------ecccCceEEEEEc-CCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 31 000 00 1257889999999 99 999999999999999998643
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.7e-23 Score=240.61 Aligned_cols=157 Identities=14% Similarity=0.110 Sum_probs=122.1
Q ss_pred ccCC--cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEecc
Q 001109 546 EDYL--VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 546 ~~s~--~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~ 623 (1155)
+++| +++++++|+.||+|++||+..+... .... ..|..+|++++|+|++.+||+|+.||.|++||+..
T Consensus 132 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~--------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 132 YGHNEVNTEYFIWADNRGTIGFQSYEDDSQY--IVHS--------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp ECCC---CCEEEEEETTCCEEEEESSSSCEE--EEEC--------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred EcCCCCCCCEEEEEeCCCcEEEEECCCCcEE--EEEe--------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 4456 6779999999999999999988742 2221 13455799999999999999999999999999987
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEeec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCC
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFSV-LNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~-h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
+... ...+.. |.++|++|+|+|+|.+||+|+ |++|+|||++++..+.....+..
T Consensus 202 ~~~~------------------------~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~ 256 (343)
T 3lrv_A 202 PDQA------------------------SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI 256 (343)
T ss_dssp TTSC------------------------CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC
T ss_pred CCCC------------------------ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc
Confidence 5421 134566 999999999999999999999 55999999999877654333333
Q ss_pred CCCCee--EEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC-CceEEEEECCCCc
Q 001109 703 SNSPVL--YLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK-DAHIVVCDSTTGH 759 (1155)
Q Consensus 703 h~~~V~--slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~-Dg~I~vwd~~tG~ 759 (1155)
|..++. +++|+ |+|++|++++. |+.|+||+..++.
T Consensus 257 ~~~~~~~~~~~~~----------------------~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 257 PEFKTGTVTYDID----------------------DSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp -----CCEEEEEC----------------------TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ccccccceEEEEC----------------------CCCCEEEEecCCCCcEEEEEEcccc
Confidence 555555 59998 89999999999 9999999987654
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.8e-23 Score=266.88 Aligned_cols=157 Identities=8% Similarity=0.013 Sum_probs=127.4
Q ss_pred CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEec-------------CCCeEEEEeCCCeEE
Q 001109 551 ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCS-------------VTLNLAIGSSSGLVW 617 (1155)
Q Consensus 551 ~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafsp-------------dg~~Lasgs~dG~V~ 617 (1155)
++++++|+.||+|++||+..+.......+ .+|..+|++++|+| ++.+|++|+.||.|+
T Consensus 113 ~~~l~sgs~dg~I~vwdl~~~~~~~~~~~---------~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~ 183 (753)
T 3jro_A 113 GPLLLVASSDGKVSVVEFKENGTTSPIII---------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183 (753)
T ss_dssp CSEEEEEETTSEEEEEECCSSSCCCCEEE---------ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEE
T ss_pred CCEEEEEeCCCcEEEEEeecCCCcceeEe---------ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEE
Confidence 56899999999999999987742222222 36788999999999 589999999999999
Q ss_pred EEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEecCCccEE
Q 001109 618 LYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF---GARLAVGFECSQVAMLDISTFSVL 694 (1155)
Q Consensus 618 lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd---g~~LAsGs~Dg~V~lWDi~~~~~l 694 (1155)
+||+...... ..+...+.+|.++|++++|+|+ |++||+|+.||+|++||+.++...
T Consensus 184 iwd~~~~~~~---------------------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 184 IWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp EEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred EEeccCCccc---------------------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 9999875321 1123567889999999999999 899999999999999999886421
Q ss_pred --EEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCc
Q 001109 695 --FITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGH 759 (1155)
Q Consensus 695 --~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~ 759 (1155)
.......+|..+|.+++|+ |+|++|++++.||.|++||..++.
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~s----------------------pdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWS----------------------LSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEEC----------------------TTTCCEEEECSSSCEECCBCCSSS
T ss_pred ceeEEeccCCCCCceEEEEEc----------------------CCCCEEEEEcCCCEEEEEecCCCC
Confidence 1111234589999999999 889999999999999999998644
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=2.6e-23 Score=244.36 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=115.8
Q ss_pred EEcCCcEEEEEecCCeEEEEECCCCcee-----eeecCC-CceeEEEEec--------CCCEEEEEeCCCcEEEEEecCC
Q 001109 91 FLQNQGFLVSISSGNEIQLWDLEARRIT-----STLPWE-SNITAFSVIF--------GTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 91 Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~-----~~l~~~-~~Vtsva~sp--------d~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
+.+++.+|++++.|++|+|||++++... ..+.+| +.|++++|+| |+++|++|+.|++|+||++...
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 3455668999999999999999988653 345566 7899999998 8999999999999999987553
Q ss_pred CceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccc
Q 001109 157 EGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHV 236 (1155)
Q Consensus 157 ~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~ 236 (1155)
..... . ..++.++.+ ++|+|++.
T Consensus 177 ~~~~~-----~----------------------------------------------~~~~~~v~~-----v~~~p~~~- 199 (393)
T 4gq1_A 177 GPILA-----G----------------------------------------------YPLSSPGIS-----VQFRPSNP- 199 (393)
T ss_dssp EEEEE-----E----------------------------------------------EECSSCEEE-----EEEETTEE-
T ss_pred ceeee-----e----------------------------------------------cCCCCCcEE-----EEECCCCC-
Confidence 21100 0 002344455 99999854
Q ss_pred cccccccEEEEEEcCCeEEEEEccCCeEEEEeccccc-ccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCC
Q 001109 237 NSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDL-QLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDG 315 (1155)
Q Consensus 237 ~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG 315 (1155)
++|++|+.||+|++||+.+++.......... ........ ... ..........|...|.++.|..+||
T Consensus 200 ------~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~-----~~~-~~~~~~~~~~~~~~v~~v~~~~~dg 267 (393)
T 4gq1_A 200 ------NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL-----NTL-PLVNTCHSSGIASSLANVRWIGSDG 267 (393)
T ss_dssp ------EEEEEEETTSEEEEEETTCCC----------CSCCCSEEE-----ESG-GGC------CCSSSCSEEEEETTTT
T ss_pred ------ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec-----ccc-cceeeeecccccccceeeeeecCCC
Confidence 5799999999999999998876543111000 00000000 000 0000001123578899999987899
Q ss_pred CeEEEEEcCCcEEEEEcCCC
Q 001109 316 SVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 316 ~~lasg~~DG~I~lWd~~s~ 335 (1155)
+.|++++.|+++++||+.+.
T Consensus 268 ~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 268 SGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp CEEEEECTTSEEEEEEC---
T ss_pred CEEEEEeCCCCEEEEECccC
Confidence 99999999999999998764
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=3.5e-22 Score=236.28 Aligned_cols=198 Identities=10% Similarity=0.063 Sum_probs=137.4
Q ss_pred CCCCceEEE---EcCCCCEEEEEEc--------------CC--eEEEEccCCc--eEEEEcCCCCCEEEEEEEcCCcEEE
Q 001109 41 IPSTASILA---FDHVQSLLAIGTQ--------------DG--RIKVIGGDNI--EGLLVSPKQLAFKHLEFLQNQGFLV 99 (1155)
Q Consensus 41 ~~~~vs~la---fsp~g~lLAsgs~--------------DG--~I~vw~~~~~--~~~~~~~~~~~V~~l~Fs~dg~~Lv 99 (1155)
....+..++ |+|+++.+.+.+. +| .|.+|+..+. ..+........+.+++|+|++..++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAI 138 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEE
Confidence 345567788 9998887665432 23 4444555332 4444443444566899999766777
Q ss_pred EEecCCeEEEEECCCCceeeee-----cCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCcee
Q 001109 100 SISSGNEIQLWDLEARRITSTL-----PWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIE 173 (1155)
Q Consensus 100 S~s~Dg~I~vWDl~t~~~~~~l-----~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~ 173 (1155)
+++.|++|++||+.+++....+ ..+ +.|++++|+|+++++++++.+|.|++|+.+... .. ..+..
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~--~~---~~~~~---- 209 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA--YK---ATVDL---- 209 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC--EE---EEEEC----
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce--EE---EEEcC----
Confidence 7778899999999999887643 334 689999999999999999999999999765422 21 00000
Q ss_pred eeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEE-EEcCC
Q 001109 174 VFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLL-VYANG 252 (1155)
Q Consensus 174 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~lls-g~~dG 252 (1155)
+...+ .+++|+|++ +++++ ++.||
T Consensus 210 ------------------------------------------~~~~~-----~~~~~~~~~--------~~l~~~~~~~~ 234 (433)
T 3bws_A 210 ------------------------------------------TGKWS-----KILLYDPIR--------DLVYCSNWISE 234 (433)
T ss_dssp ------------------------------------------SSSSE-----EEEEEETTT--------TEEEEEETTTT
T ss_pred ------------------------------------------CCCCe-----eEEEEcCCC--------CEEEEEecCCC
Confidence 11223 339999974 34644 44799
Q ss_pred eEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEc--------C
Q 001109 253 LIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYV--------D 324 (1155)
Q Consensus 253 ~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~--------D 324 (1155)
.|++||+.+++.+.... ....+.+++|+ |+|+.|++++. |
T Consensus 235 ~i~~~d~~~~~~~~~~~-------------------------------~~~~~~~~~~~-~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 235 DISVIDRKTKLEIRKTD-------------------------------KIGLPRGLLLS-KDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp EEEEEETTTTEEEEECC-------------------------------CCSEEEEEEEC-TTSSEEEEEEEESCTTCSCC
T ss_pred cEEEEECCCCcEEEEec-------------------------------CCCCceEEEEc-CCCCEEEEEECCCCccccCC
Confidence 99999999998776411 13448899999 99999999883 6
Q ss_pred CcEEEEEcCC
Q 001109 325 GDILLWNLRA 334 (1155)
Q Consensus 325 G~I~lWd~~s 334 (1155)
|.|++||+.+
T Consensus 283 g~i~~~d~~~ 292 (433)
T 3bws_A 283 GRLGIYSMDK 292 (433)
T ss_dssp EEEEEEETTT
T ss_pred CeEEEEECCC
Confidence 7777777653
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=9.5e-22 Score=232.53 Aligned_cols=134 Identities=14% Similarity=0.096 Sum_probs=105.6
Q ss_pred CCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeE-EEEeCCCeEEEEEeccCccccceeeeccCC
Q 001109 559 RDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNL-AIGSSSGLVWLYNLIKSSNEETLNLVTETG 637 (1155)
Q Consensus 559 ~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~L-asgs~dG~V~lwd~~~~~~~~~~~~v~~~~ 637 (1155)
.||.|++||+.++... ..+ .|...+.+++|+|+++.| ++++.++.|++|++.++..
T Consensus 281 ~dg~i~~~d~~~~~~~--~~~----------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~----------- 337 (433)
T 3bws_A 281 GGGRLGIYSMDKEKLI--DTI----------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV----------- 337 (433)
T ss_dssp CCEEEEEEETTTTEEE--EEE----------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE-----------
T ss_pred CCCeEEEEECCCCcEE--eec----------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE-----------
Confidence 5889999999877632 222 223478999999999755 6678999999999986432
Q ss_pred ceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeC---------------CCcEEEEecCCccEEEEeccCCC
Q 001109 638 KEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFE---------------CSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 638 ~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~---------------Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
...+ .+...+.+++|+|+|++|++++. ||.|++||+.+++.+....
T Consensus 338 --------------~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~---- 398 (433)
T 3bws_A 338 --------------QKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE---- 398 (433)
T ss_dssp --------------EEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE----
T ss_pred --------------EEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec----
Confidence 1222 36678999999999999998887 5799999999988876553
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC-CceEEEEECC
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK-DAHIVVCDST 756 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~-Dg~I~vwd~~ 756 (1155)
+...+.+++|+ |||+.|++++. |++|++||++
T Consensus 399 ~~~~~~~~~~s----------------------~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 399 AGNQPTGLDVS----------------------PDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CSSSEEEEEEC----------------------TTSCEEEEEETTTTEEEEEEET
T ss_pred CCCCCceEEEc----------------------CCCCEEEEEECCCCeEEEEEec
Confidence 24578999998 89999998875 9999999976
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=1e-21 Score=240.65 Aligned_cols=205 Identities=11% Similarity=0.084 Sum_probs=149.7
Q ss_pred EEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEEC--CCCceeeeecCCCc
Q 001109 49 AFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDL--EARRITSTLPWESN 126 (1155)
Q Consensus 49 afsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl--~t~~~~~~l~~~~~ 126 (1155)
+|+|++.++++++.|++|.+||..+.+++........+..++|+|||++|++++.|++|.+||+ .+++++.+++....
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~ 223 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE 223 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCC
Confidence 5999999999999999999999988877766543334889999999999999999999999999 89999999987778
Q ss_pred eeEEEEec----CCCEEEEEeC-CCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccccccee
Q 001109 127 ITAFSVIF----GTSYMYIGDE-YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLL 201 (1155)
Q Consensus 127 Vtsva~sp----d~~~l~~G~~-dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 201 (1155)
+..++|+| +|++||+++. +++|.||+... ++... .++....
T Consensus 224 p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t--~~~~~---~i~~~g~----------------------------- 269 (543)
T 1nir_A 224 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET--LEPKQ---IVSTRGM----------------------------- 269 (543)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT--CCEEE---EEECCEE-----------------------------
T ss_pred cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc--cccce---eecccCc-----------------------------
Confidence 99999999 9999999985 89999985443 33320 1111000
Q ss_pred eecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccccccccc
Q 001109 202 FYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVD 281 (1155)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~ 281 (1155)
+ ..+........ +.++.++|++. ..+++...+|.|.+||..+.+.+..... .
T Consensus 270 ----~--~~~~~~~~~~~-----v~~i~~s~~~~-------~~~vs~~~~g~i~vvd~~~~~~l~~~~i-----~----- 321 (543)
T 1nir_A 270 ----T--VDTQTYHPEPR-----VAAIIASHEHP-------EFIVNVKETGKVLLVNYKDIDNLTVTSI-----G----- 321 (543)
T ss_dssp ----C--SSSCCEESCCC-----EEEEEECSSSS-------EEEEEETTTTEEEEEECTTSSSCEEEEE-----E-----
T ss_pred ----c--cCccccccCCc-----eEEEEECCCCC-------EEEEEECCCCeEEEEEecCCCcceeEEe-----c-----
Confidence 0 00000000112 33489999754 4677778899999999987654332110 0
Q ss_pred CCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE-cCCcEEEEEcCCC
Q 001109 282 DPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY-VDGDILLWNLRAA 335 (1155)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~-~DG~I~lWd~~s~ 335 (1155)
+...+..++|+ |||++|+++. .|++|.+||+.++
T Consensus 322 -------------------~~~~~~~~~~s-pdg~~l~va~~~~~~v~v~D~~tg 356 (543)
T 1nir_A 322 -------------------AAPFLHDGGWD-SSHRYFMTAANNSNKVAVIDSKDR 356 (543)
T ss_dssp -------------------CCSSCCCEEEC-TTSCEEEEEEGGGTEEEEEETTTT
T ss_pred -------------------cCcCccCceEC-CCCCEEEEEecCCCeEEEEECCCC
Confidence 13456789999 9999877655 5899999998754
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=1.1e-21 Score=240.54 Aligned_cols=352 Identities=11% Similarity=0.077 Sum_probs=240.0
Q ss_pred EEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccC
Q 001109 90 EFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPK 169 (1155)
Q Consensus 90 ~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~ 169 (1155)
.|+|++..+++.+.|++|.+||..+++++.++.....+.+++|+||+++||+++.+++|++|+++..+++.. ..++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~---~~i~- 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV---AEIK- 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE---EEEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE---EEEe-
Confidence 388998888888999999999999999999998554589999999999999999999999997742333322 0010
Q ss_pred CceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEee----cccccccccccEE
Q 001109 170 DVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQF----QKHVNSTLGFSQL 245 (1155)
Q Consensus 170 ~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p----~~~~~~~~~~~~l 245 (1155)
....+.+ ++|+| ++ +++
T Consensus 220 ----------------------------------------------~g~~p~~-----va~sp~~~~dg--------~~l 240 (543)
T 1nir_A 220 ----------------------------------------------IGIEARS-----VESSKFKGYED--------RYT 240 (543)
T ss_dssp ----------------------------------------------CCSEEEE-----EEECCSTTCTT--------TEE
T ss_pred ----------------------------------------------cCCCcce-----EEeCCCcCCCC--------CEE
Confidence 0111233 89999 74 567
Q ss_pred EEEE-cCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCC-eEEEEEc
Q 001109 246 LLVY-ANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGS-VLAVGYV 323 (1155)
Q Consensus 246 lsg~-~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~-~lasg~~ 323 (1155)
++++ .+++|.+||..+++++..... .. .... + ...+....+.++.++ +++. ++++...
T Consensus 241 ~v~~~~~~~v~v~D~~t~~~~~~i~~-----~g----~~~~--~--------~~~~~~~~v~~i~~s-~~~~~~~vs~~~ 300 (543)
T 1nir_A 241 IAGAYWPPQFAIMDGETLEPKQIVST-----RG----MTVD--T--------QTYHPEPRVAAIIAS-HEHPEFIVNVKE 300 (543)
T ss_dssp EEEEEESSEEEEEETTTCCEEEEEEC-----CE----ECSS--S--------CCEESCCCEEEEEEC-SSSSEEEEEETT
T ss_pred EEEEccCCeEEEEeccccccceeecc-----cC----cccC--c--------cccccCCceEEEEEC-CCCCEEEEEECC
Confidence 7776 589999999999988765221 00 0000 0 000123468888888 7665 4556667
Q ss_pred CCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccC
Q 001109 324 DGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNW 403 (1155)
Q Consensus 324 DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~ 403 (1155)
+|.|.+||+.+... +.+.
T Consensus 301 ~g~i~vvd~~~~~~----------------------------------------------------------l~~~---- 318 (543)
T 1nir_A 301 TGKVLLVNYKDIDN----------------------------------------------------------LTVT---- 318 (543)
T ss_dssp TTEEEEEECTTSSS----------------------------------------------------------CEEE----
T ss_pred CCeEEEEEecCCCc----------------------------------------------------------ceeE----
Confidence 78888888754210 0000
Q ss_pred CcccccceeceeeeecCCCceeEEEEecCCCCCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCccccc
Q 001109 404 SSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPT 483 (1155)
Q Consensus 404 ~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (1155)
.+ .
T Consensus 319 ----------------------------------------------~i---~---------------------------- 321 (543)
T 1nir_A 319 ----------------------------------------------SI---G---------------------------- 321 (543)
T ss_dssp ----------------------------------------------EE---E----------------------------
T ss_pred ----------------------------------------------Ee---c----------------------------
Confidence 00 0
Q ss_pred CCCcceEEEEeeecCCCchhHHHHHHHHhhccccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEE-EEECCCc
Q 001109 484 IEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYI-AGYRDGS 562 (1155)
Q Consensus 484 h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLa-Tgs~Dgt 562 (1155)
+...+. .+ +|+|++++++ ++..|++
T Consensus 322 ~~~~~~-----------------------------------------------------~~-~~spdg~~l~va~~~~~~ 347 (543)
T 1nir_A 322 AAPFLH-----------------------------------------------------DG-GWDSSHRYFMTAANNSNK 347 (543)
T ss_dssp CCSSCC-----------------------------------------------------CE-EECTTSCEEEEEEGGGTE
T ss_pred cCcCcc-----------------------------------------------------Cc-eECCCCCEEEEEecCCCe
Confidence 000000 01 5667887554 5557899
Q ss_pred EEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecC-CCeEEEEe-CCCeEEEEEeccCccccceeeeccCCceE
Q 001109 563 TRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSV-TLNLAIGS-SSGLVWLYNLIKSSNEETLNLVTETGKEV 640 (1155)
Q Consensus 563 VrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspd-g~~Lasgs-~dG~V~lwd~~~~~~~~~~~~v~~~~~~~ 640 (1155)
|++||..++.+. ..+... ...|......+ ++|+ +..+|++. .|++|.+|++.+....
T Consensus 348 v~v~D~~tg~l~--~~i~~g-----~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~------------- 406 (543)
T 1nir_A 348 VAVIDSKDRRLS--ALVDVG-----KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP------------- 406 (543)
T ss_dssp EEEEETTTTEEE--EEEECS-----SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT-------------
T ss_pred EEEEECCCCeEE--EeeccC-----CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc-------------
Confidence 999999988743 223210 01244334443 5787 66667765 5899999999873211
Q ss_pred EEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe-------CCCcEEEEecCCccEEEEe-cc-----CCCCCCCe
Q 001109 641 HILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF-------ECSQVAMLDISTFSVLFIT-DS-----LSNSNSPV 707 (1155)
Q Consensus 641 ~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs-------~Dg~V~lWDi~~~~~l~~~-~~-----~~~h~~~V 707 (1155)
....+++.++.+|.+.+..|+|+|||++|++++ .+++|.|||+.+++++++. .+ +..+...|
T Consensus 407 -----~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~ 481 (543)
T 1nir_A 407 -----QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV 481 (543)
T ss_dssp -----TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEE
T ss_pred -----hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCce
Confidence 011345577888988899999999999999998 3789999999998877432 11 23467889
Q ss_pred eEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEE-----eCCceEEEEECCCCceeeeee
Q 001109 708 LYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFM-----TKDAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 708 ~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~-----s~Dg~I~vwd~~tG~~l~~~~ 765 (1155)
.+++|+ |||+.|+++ +.|++|.|||..||+++.+.+
T Consensus 482 ~~~~~~----------------------~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 482 VQPEYN----------------------KRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEEEC----------------------SSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EeccCC----------------------CCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 999998 899999976 358999999999999998875
No 125
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.8e-22 Score=235.76 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=101.1
Q ss_pred ccCCc---CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEec
Q 001109 546 EDYLV---ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLI 622 (1155)
Q Consensus 546 ~~s~~---~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~ 622 (1155)
+|+|+ +++|++|+.|++|++||+..+... ..+ ..+|..+|++++|+ ++++|++|+.||.|++||+.
T Consensus 202 ~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~--------~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 202 HLIKDSDGHQFIITSDRDEHIKISHYPQCFIV--DKW--------LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWK 270 (450)
T ss_dssp EEEECTTSCEEEEEEETTSCEEEEEESCTTCE--EEE--------CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETT
T ss_pred EEcCCCCCCcEEEEEcCCCcEEEEECCCCcee--eee--------ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECC
Confidence 44555 678999999999999999877632 221 12788899999999 99999999999999999998
Q ss_pred cCccccceeeeccCCceEEEec-CCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEec--CCc---cEEE
Q 001109 623 KSSNEETLNLVTETGKEVHILP-GGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF-ECSQVAMLDI--STF---SVLF 695 (1155)
Q Consensus 623 ~~~~~~~~~~v~~~~~~~~~~~-~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs-~Dg~V~lWDi--~~~---~~l~ 695 (1155)
++.....+.............+ .+..+. ...-..+...|.+|+|+|++++|++++ .|+.|+|||+ ..+ ..+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~ 349 (450)
T 2vdu_B 271 TGKNLSTFDYNSLIKPYLNDQHLAPPRFQ-NENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQ 349 (450)
T ss_dssp TCCEEEEEECHHHHGGGCCTTSBC-----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEE
T ss_pred CCcEeeeecchhhhhhhhhhccccccccc-ccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeecc
Confidence 7643211100000000000000 000000 000013456799999999999999999 8999999999 554 3333
Q ss_pred EeccCCCCCCCeeEEEEe
Q 001109 696 ITDSLSNSNSPVLYLAVK 713 (1155)
Q Consensus 696 ~~~~~~~h~~~V~slafs 713 (1155)
. +.+| .+|.+++|+
T Consensus 350 ~---~~~~-~~v~~~~~~ 363 (450)
T 2vdu_B 350 I---ITFP-YNVISLSAH 363 (450)
T ss_dssp E---EECS-SCEEEEEEE
T ss_pred E---eccC-CceEEEEec
Confidence 3 3346 889999999
No 126
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.90 E-value=5.5e-22 Score=235.78 Aligned_cols=169 Identities=12% Similarity=0.176 Sum_probs=126.0
Q ss_pred EcCCCCCEEEEEEEcC-CcEEEEEecCCeEEEEECCC----------CceeeeecCC-CceeEEEEecCCC-EEEEEeCC
Q 001109 79 VSPKQLAFKHLEFLQN-QGFLVSISSGNEIQLWDLEA----------RRITSTLPWE-SNITAFSVIFGTS-YMYIGDEY 145 (1155)
Q Consensus 79 ~~~~~~~V~~l~Fs~d-g~~LvS~s~Dg~I~vWDl~t----------~~~~~~l~~~-~~Vtsva~spd~~-~l~~G~~d 145 (1155)
...|...|.+++|+|+ +.+|++++.||.|++||+.+ ...+.++..| ..|++++|+|++. +|++|+.|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 3456789999999997 56888999999999999987 5666777766 7899999999998 99999999
Q ss_pred CcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCccccccccccccee
Q 001109 146 GMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFV 225 (1155)
Q Consensus 146 G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 225 (1155)
|+|++|++........ .+... ..+ ..+... |
T Consensus 204 g~i~vwd~~~~~~~~~----~~~~~------------------------------~~~----------~~h~~~-----v 234 (430)
T 2xyi_A 204 HTICLWDINATPKEHR----VIDAK------------------------------NIF----------TGHTAV-----V 234 (430)
T ss_dssp SCEEEEETTSCCBGGG----EEECS------------------------------EEE----------CCCSSC-----E
T ss_pred CeEEEEeCCCCCCCCc----eeccc------------------------------eee----------cCCCCC-----E
Confidence 9999997765221000 00000 000 001233 4
Q ss_pred eEEEEeecccccccccccEEEEEEcCCeEEEEEccCCe---EEEEecccccccccccccCCCCCCCCCCccccccccccc
Q 001109 226 EIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDK---VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVE 302 (1155)
Q Consensus 226 ~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1155)
.+++|+|.+. ..+++++.||.|++||++++. .+... . .|.
T Consensus 235 ~~v~~~p~~~-------~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-------~-----------------------~~~ 277 (430)
T 2xyi_A 235 EDVAWHLLHE-------SLFGSVADDQKLMIWDTRNNNTSKPSHTV-------D-----------------------AHT 277 (430)
T ss_dssp EEEEECSSCT-------TEEEEEETTSEEEEEETTCSCSSSCSEEE-------E-----------------------CCS
T ss_pred eeeEEeCCCC-------CEEEEEeCCCeEEEEECCCCCCCcceeEe-------e-----------------------cCC
Confidence 4499999643 589999999999999998763 22210 0 147
Q ss_pred CCccEEEEEecCCC-eEEEEEcCCcEEEEEcCC
Q 001109 303 KEISSLCWASNDGS-VLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 303 ~~V~sl~~s~pdG~-~lasg~~DG~I~lWd~~s 334 (1155)
..|++++|+ |++. .|++|+.||.|++||++.
T Consensus 278 ~~v~~i~~~-p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 278 AEVNCLSFN-PYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp SCEEEEEEC-SSCTTEEEEEETTSEEEEEETTC
T ss_pred CCeEEEEeC-CCCCCEEEEEeCCCeEEEEeCCC
Confidence 789999999 8887 699999999999999865
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=1.2e-21 Score=220.94 Aligned_cols=103 Identities=11% Similarity=0.056 Sum_probs=73.5
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceee
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNL 632 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~ 632 (1155)
.++||+.|++||+||..++.......+.. ..+|...+.+.+++ +..+|+|+.||+|+|||+.++.
T Consensus 252 ~laSGs~D~tIklWd~~tgk~l~v~~~~~------p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk------- 316 (356)
T 2w18_A 252 SESLRSPVFQLIVINPKTTLSVGVMLYCL------PPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQ------- 316 (356)
T ss_dssp ------CCEEEEEEETTTTEEEEEEEECC------CTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCS-------
T ss_pred eeeccCCCcEEEEEECCCCEEEEEEEeec------cCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCc-------
Confidence 57899999999999998886432211110 12666665555554 8899999999999999998753
Q ss_pred eccCCceEEEecCCCCCceeEEeecCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEec
Q 001109 633 VTETGKEVHILPGGDGPQCKALFSVLNSPIC-NLKFSNFGARLAVGFECSQVAMLDI 688 (1155)
Q Consensus 633 v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vt-slafSpdg~~LAsGs~Dg~V~lWDi 688 (1155)
++.+|.+|...|. +++|||||++||+|+.|++|+|||+
T Consensus 317 ------------------~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 ------------------CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ------------------EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ------------------EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 3467788887655 6999999999999999999999996
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=1.9e-21 Score=219.32 Aligned_cols=151 Identities=11% Similarity=0.078 Sum_probs=110.0
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeE------------EEEeCCCeEE
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNL------------AIGSSSGLVW 617 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~L------------asgs~dG~V~ 617 (1155)
++.+||||+.|++|||||+.++++ +.+++.. ..+...|.+++|+|+|+++ ++|+.|++|+
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~--l~tL~g~------~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQL--LKKMHID------DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCE--EEEEECC------C---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred CCceEEEecCCCcEEEEECCCCcE--EEEEcCC------CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 456899999999999999999873 3444311 0123478899999999987 6688899999
Q ss_pred EEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEe
Q 001109 618 LYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFIT 697 (1155)
Q Consensus 618 lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~ 697 (1155)
+|+..++... .++. ...-.+|.+.+.+..++ +.++|+|+.||+|+|||+.+++++++.
T Consensus 264 lWd~~tgk~l-------------~v~~-------~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL 321 (356)
T 2w18_A 264 VINPKTTLSV-------------GVML-------YCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALL 321 (356)
T ss_dssp EEETTTTEEE-------------EEEE-------ECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred EEECCCCEEE-------------EEEE-------eeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEe
Confidence 9998775321 0000 00013666666555555 889999999999999999999998764
Q ss_pred ccCCCCCCCee-EEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 698 DSLSNSNSPVL-YLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 698 ~~~~~h~~~V~-slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
.+|...|. +++|+ |||++|++|+.|++|+|||.
T Consensus 322 ---~gH~~~vvs~vafS----------------------PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 322 ---PPVSDQHWSFVKWS----------------------GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ---CCC--CCCCEEEEC----------------------SSSSEEEEECTTSCEEEEEE
T ss_pred ---cCCCCCeEEEEEEC----------------------CCCCEEEEEECCCcEEEecC
Confidence 46887766 58999 99999999999999999995
No 129
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.7e-22 Score=254.67 Aligned_cols=253 Identities=13% Similarity=0.165 Sum_probs=185.5
Q ss_pred eccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccC--CceEEEE-cCCCCCEEEEEEEcC--CcEEEEEecCCeEEEEE
Q 001109 37 LHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGD--NIEGLLV-SPKQLAFKHLEFLQN--QGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 37 ~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~--~~~~~~~-~~~~~~V~~l~Fs~d--g~~LvS~s~Dg~I~vWD 111 (1155)
...||.+.|++++|+|+|++||+|+.||+|+||+.. ....... ..|..+|.+++|+++ +.+|++++.||+|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 346999999999999999999999999999999986 3333333 357889999999988 89999999999999999
Q ss_pred CCCCc--eeeeecCC-CceeEEEEecC--CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccc
Q 001109 112 LEARR--ITSTLPWE-SNITAFSVIFG--TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNH 186 (1155)
Q Consensus 112 l~t~~--~~~~l~~~-~~Vtsva~spd--~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~ 186 (1155)
+.+++ .+..+..| ..|++++|+|+ ++++++|+.||+|++|++........ ..+..
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~---~~~~~----------------- 143 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP---IIIDA----------------- 143 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC---EEEEC-----------------
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce---eEeec-----------------
Confidence 99987 56666655 78999999999 99999999999999997765421100 00000
Q ss_pred ccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecc-----------cccccccccEEEEEEcCCeEE
Q 001109 187 IQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQK-----------HVNSTLGFSQLLLVYANGLII 255 (1155)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~-----------~~~~~~~~~~llsg~~dG~I~ 255 (1155)
+...+. ++.|+|.. ++ +.+++|+.||.|+
T Consensus 144 -----------------------------~~~~v~-----~l~~~p~~~~~~~~~~~~~d~------~~l~sgs~dg~I~ 183 (753)
T 3jro_A 144 -----------------------------HAIGVN-----SASWAPATIEEDGEHNGTKES------RKFVTGGADNLVK 183 (753)
T ss_dssp -----------------------------CSSCEE-----EEEECCCC---------CGGG------CCEEEEETTSCEE
T ss_pred -----------------------------CCCceE-----EEEecCcccccccccccCCCC------CEEEEEECCCeEE
Confidence 122233 37777731 13 5799999999999
Q ss_pred EEEccCCe----EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecC---CCeEEEEEcCCcEE
Q 001109 256 LWDVSEDK----VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASND---GSVLAVGYVDGDIL 328 (1155)
Q Consensus 256 lWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pd---G~~lasg~~DG~I~ 328 (1155)
+||+.++. +... +. .|...|++++|+ |+ |.+|++|+.||.|+
T Consensus 184 iwd~~~~~~~~~~~~~-------~~-----------------------~h~~~V~~l~~s-p~~~~~~~l~s~s~Dg~I~ 232 (753)
T 3jro_A 184 IWKYNSDAQTYVLEST-------LE-----------------------GHSDWVRDVAWS-PTVLLRSYLASVSQDRTCI 232 (753)
T ss_dssp EEEEETTTTEEEEEEE-------EC-----------------------CCSSCEEEEEEC-CCCSSSEEEEEEESSSCEE
T ss_pred EEeccCCcccceeeee-------ec-----------------------CCCCcEEEEEec-cCCCCCCEEEEEecCCEEE
Confidence 99998763 2221 11 157889999999 89 99999999999999
Q ss_pred EEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEcc
Q 001109 329 LWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLN 402 (1155)
Q Consensus 329 lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~ 402 (1155)
+||+.++..... ........+..+|..+.|++ ++.++++|+.+ ..+.+|++.
T Consensus 233 iwd~~~~~~~~~-----------~~~~~~~~~~~~v~~l~~sp-------dg~~l~s~s~D----g~I~vwd~~ 284 (753)
T 3jro_A 233 IWTQDNEQGPWK-----------KTLLKEEKFPDVLWRASWSL-------SGNVLALSGGD----NKVTLWKEN 284 (753)
T ss_dssp EEEESSSSSCCB-----------CCBSSSSCCSSCCCCEEECT-------TTCCEEEECSS----SCEECCBCC
T ss_pred EecCCCCCCcce-----------eEEeccCCCCCceEEEEEcC-------CCCEEEEEcCC----CEEEEEecC
Confidence 999988642211 01112234667888888875 44556666554 557776554
No 130
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.89 E-value=8.5e-21 Score=221.11 Aligned_cols=160 Identities=10% Similarity=0.059 Sum_probs=126.9
Q ss_pred ccCCcCcEE-EEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeE-EEEeCCCeEEEEEecc
Q 001109 546 EDYLVERLY-IAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNL-AIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 546 ~~s~~~~lL-aTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~L-asgs~dG~V~lwd~~~ 623 (1155)
+++|+++.+ ++++.|+.|++||+.++... ..+. .+ ..+.+++|+|+++.| ++++.+|.|++||+.+
T Consensus 122 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~---------~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~ 189 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVI--NTVS---------VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT 189 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEE--EEEE---------CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEE--EEEe---------cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 667887755 78999999999999887632 2222 12 367999999999988 6778889999999987
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEecCCccEEEEeccC
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF---ECSQVAMLDISTFSVLFITDSL 700 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs---~Dg~V~lWDi~~~~~l~~~~~~ 700 (1155)
+.. ... ..|...+.+++|+|+|++|++++ .++.|++||+.++..+.....
T Consensus 190 ~~~-------------------------~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~- 242 (391)
T 1l0q_A 190 NSV-------------------------IDT-VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV- 242 (391)
T ss_dssp TEE-------------------------EEE-EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-
T ss_pred CeE-------------------------EEE-EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec-
Confidence 432 112 23566789999999999999988 689999999999888765532
Q ss_pred CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEE-EEEeCCceEEEEECCCCceeeeeecccC
Q 001109 701 SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETL-FFMTKDAHIVVCDSTTGHILFSRSIHHQ 769 (1155)
Q Consensus 701 ~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L-~s~s~Dg~I~vwd~~tG~~l~~~~~~~~ 769 (1155)
|. .+.+++|+ ||++.| ++++.|++|++||+.+|+++...+.+..
T Consensus 243 --~~-~~~~~~~s----------------------~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 243 --GP-DPAGIAVT----------------------PDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp --CS-SEEEEEEC----------------------TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred --CC-CccEEEEc----------------------cCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 33 57899998 888877 6778999999999999999988877655
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=2.9e-18 Score=217.75 Aligned_cols=123 Identities=11% Similarity=0.016 Sum_probs=92.7
Q ss_pred CCCcceeeccCC--CCCceEEEEcCCCCEEEEEEc-CC-----eEEEEccCCceEEEEcC-CC-----------------
Q 001109 30 DFDPRVTLHYGI--PSTASILAFDHVQSLLAIGTQ-DG-----RIKVIGGDNIEGLLVSP-KQ----------------- 83 (1155)
Q Consensus 30 ~~~~~~~~~~G~--~~~vs~lafsp~g~lLAsgs~-DG-----~I~vw~~~~~~~~~~~~-~~----------------- 83 (1155)
.+.+...++.+. ...++.++|||||++||+++. || +|++|+..+.+...... +.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (741)
T 2ecf_A 22 KLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRE 101 (741)
T ss_dssp CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------
T ss_pred cccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhh
Confidence 344444443332 457999999999999999998 88 99999988765443322 11
Q ss_pred -------CCEEEEEEEcCCcEEEEEecCCeEEEEECCCC---ceeeeecC-CCceeEEEEecCCCEEEEEeCCCcEEEEE
Q 001109 84 -------LAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR---RITSTLPW-ESNITAFSVIFGTSYMYIGDEYGMVYVLK 152 (1155)
Q Consensus 84 -------~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~---~~~~~l~~-~~~Vtsva~spd~~~l~~G~~dG~V~vw~ 152 (1155)
..|..++|+|||++|++++. ++|.+||+.++ ... .+.. ...+.+++|+|||++|+.++. +.|++|+
T Consensus 102 ~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d 178 (741)
T 2ecf_A 102 RQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVID 178 (741)
T ss_dssp -----CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC-BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEE
T ss_pred hhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE-EcccCCcccccccCCCCCCEEEEEeC-CcEEEEe
Confidence 23788999999999999886 99999999988 443 3443 477999999999999998874 5777775
Q ss_pred ecC
Q 001109 153 YDT 155 (1155)
Q Consensus 153 ~d~ 155 (1155)
.+.
T Consensus 179 ~~~ 181 (741)
T 2ecf_A 179 LAS 181 (741)
T ss_dssp TTT
T ss_pred cCC
Confidence 544
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=2.9e-18 Score=217.75 Aligned_cols=154 Identities=10% Similarity=-0.085 Sum_probs=106.9
Q ss_pred ccCCcCcEEEEEEC-----CCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEE
Q 001109 546 EDYLVERLYIAGYR-----DGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYN 620 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~-----DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd 620 (1155)
+| |+|+.|+.++. +..|++||+.++....+...... +.-..+.+++|+|||+++++++.||.++||.
T Consensus 293 ~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 364 (741)
T 2ecf_A 293 NW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP-------TWVPLHNSLRFLDDGSILWSSERTGFQHLYR 364 (741)
T ss_dssp EE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS-------SCCCCCSCCEECTTSCEEEEECTTSSCEEEE
T ss_pred Ee-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC-------CcCCcCCceEECCCCeEEEEecCCCccEEEE
Confidence 67 77777776653 67899999998875433321100 1101456889999999999999999999998
Q ss_pred eccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEE-EEcCCCCEEE-EEeCCC--cEEEEecCC-ccEEE
Q 001109 621 LIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNL-KFSNFGARLA-VGFECS--QVAMLDIST-FSVLF 695 (1155)
Q Consensus 621 ~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtsl-afSpdg~~LA-sGs~Dg--~V~lWDi~~-~~~l~ 695 (1155)
+..... ...+..|...|.++ +|||||++|+ +++.++ .++||++.. +..+.
T Consensus 365 ~~~~~~-------------------------~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 365 IDSKGK-------------------------AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp ECSSSC-------------------------EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred EcCCCC-------------------------eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 863210 13455677788887 5999999775 455555 899999864 44333
Q ss_pred EeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCC----ceEEEEECCCC
Q 001109 696 ITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKD----AHIVVCDSTTG 758 (1155)
Q Consensus 696 ~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~D----g~I~vwd~~tG 758 (1155)
. +.+ ...+.+++|+ |||+.|+....+ ..+.+||..++
T Consensus 420 ~---l~~-~~~~~~~~~s----------------------pdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 420 R---LSK-APGMHSASFA----------------------RNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp E---CCC-SCSEEEEEEC----------------------TTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred e---ccc-CCCceEEEEC----------------------CCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 2 233 5678899998 889988876554 56888887543
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.82 E-value=3.3e-18 Score=202.54 Aligned_cols=130 Identities=8% Similarity=-0.077 Sum_probs=95.6
Q ss_pred ccCCcCcEEEEEEC-CC--cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC---CeEEEE
Q 001109 546 EDYLVERLYIAGYR-DG--STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS---GLVWLY 619 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~-Dg--tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d---G~V~lw 619 (1155)
.|+|+++.|++++. ++ .|.+||+.++... .+. .|...+.+++|+|||++|++++.+ +.|++|
T Consensus 273 ~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~---~l~---------~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~ 340 (415)
T 2hqs_A 273 TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ---RIT---------WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 340 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSSCCE---ECC---------CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred EECCCCCEEEEEECCCCCcEEEEEECCCCCEE---EEe---------cCCCcccCeEECCCCCEEEEEECcCCceEEEEE
Confidence 45677777777765 45 5777788776532 111 344578999999999999988865 589999
Q ss_pred EeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEecCCccEEEE
Q 001109 620 NLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECS---QVAMLDISTFSVLFI 696 (1155)
Q Consensus 620 d~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg---~V~lWDi~~~~~l~~ 696 (1155)
++.++.. ..+..|. .+.+++|+|||++|++++.++ .|.+||+.++.. ..
T Consensus 341 d~~~~~~--------------------------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~-~~ 392 (415)
T 2hqs_A 341 DLATGGV--------------------------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-AR 392 (415)
T ss_dssp ETTTCCE--------------------------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EE
T ss_pred ECCCCCE--------------------------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE-EE
Confidence 9876432 1234443 899999999999999999887 799999986543 32
Q ss_pred eccCCCCCCCeeEEEEeecCCC
Q 001109 697 TDSLSNSNSPVLYLAVKSLSDT 718 (1155)
Q Consensus 697 ~~~~~~h~~~V~slafs~~~~~ 718 (1155)
+.+|.+.|.+++|++.-++
T Consensus 393 ---l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 393 ---LPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp ---CCCSSSEEEEEEECCCCCC
T ss_pred ---eeCCCCCCcCCcccccccc
Confidence 4568999999999965443
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=6.5e-18 Score=213.80 Aligned_cols=172 Identities=14% Similarity=0.205 Sum_probs=110.5
Q ss_pred CEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCC----ceeEEEEecCCCEEEEEeCC---------CcEEEE
Q 001109 85 AFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWES----NITAFSVIFGTSYMYIGDEY---------GMVYVL 151 (1155)
Q Consensus 85 ~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~----~Vtsva~spd~~~l~~G~~d---------G~V~vw 151 (1155)
.+..++|+|||.++++ +.|++|++||+.+++....+..+. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4667899999987766 789999999999998877776654 49999999999999998775 666677
Q ss_pred EecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEe
Q 001109 152 KYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQ 231 (1155)
Q Consensus 152 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~ 231 (1155)
+.+... .. .+... . .+...+.. ++|+
T Consensus 97 d~~~~~--~~----~l~~~--------------------------------------~-----~~~~~~~~-----~~~S 122 (723)
T 1xfd_A 97 KIPHGD--PQ----SLDPP--------------------------------------E-----VSNAKLQY-----AGWG 122 (723)
T ss_dssp ESSSCC--CE----ECCCT--------------------------------------T-----CCSCCCSB-----CCBC
T ss_pred ECCCCc--eE----eccCC--------------------------------------c-----cccccccc-----cEEC
Confidence 554432 11 00000 0 00112334 8899
Q ss_pred ecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEE
Q 001109 232 FQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWA 311 (1155)
Q Consensus 232 p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s 311 (1155)
|++ ++|+.++. +.|++||+.+++............ +. .|+ .+-..+ ++....+.+++|+
T Consensus 123 PdG--------~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~---~~------~g~--~~~v~~-ee~~~~~~~~~~S 181 (723)
T 1xfd_A 123 PKG--------QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV---IY------NGL--SDWLYE-EEILKTHIAHWWS 181 (723)
T ss_dssp SST--------TCEEEEET-TEEEEESSSSSCCEEEECCCBTTT---EE------EEE--CCHHHH-HTTSSSSEEEEEC
T ss_pred CCC--------CEEEEEEC-CeEEEEECCCCceEEEecCCCCCc---eE------Ccc--cceeEE-EEeccCcceEEEC
Confidence 984 56888775 899999999887765421100000 00 000 000000 0001245799999
Q ss_pred ecCCCeEEEEEcC-CcEEEEEcC
Q 001109 312 SNDGSVLAVGYVD-GDILLWNLR 333 (1155)
Q Consensus 312 ~pdG~~lasg~~D-G~I~lWd~~ 333 (1155)
|||++||+++.| +.+.+|++.
T Consensus 182 -pDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 182 -PDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp -TTSSEEEEEEEECTTSCEEEEC
T ss_pred -CCCCEEEEEEECCCccceEEee
Confidence 999999998876 467778764
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.80 E-value=2e-17 Score=208.94 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=75.7
Q ss_pred ceEEEEcCCCCEEEEEEcCCeEEEEccCCceE--EEEcCCC-----------------CCEEEEEEEcCCcEEEEEecCC
Q 001109 45 ASILAFDHVQSLLAIGTQDGRIKVIGGDNIEG--LLVSPKQ-----------------LAFKHLEFLQNQGFLVSISSGN 105 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~--~~~~~~~-----------------~~V~~l~Fs~dg~~LvS~s~Dg 105 (1155)
+..+.|. |+.+++++.|| | +||..+.+. .....+. ..|..++|+|| ++++.+ .++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 4446777 66777888888 8 999876544 2211111 46999999999 666655 469
Q ss_pred eEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 106 EIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 106 ~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
+|.+||+.++++.........+.+++|+|||++|+.+ .++.|++|+.+.
T Consensus 102 ~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~ 150 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK 150 (706)
T ss_dssp EEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred EEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence 9999999999876655556778999999999999885 678999987765
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.78 E-value=3.3e-17 Score=206.87 Aligned_cols=156 Identities=14% Similarity=0.069 Sum_probs=111.9
Q ss_pred ccCCcCcEEEEEECCC-----cEEEEeCCCC-CeeeeeeeCCCcCccccCCCCCCeEEEEEec--CCCeEEEEeCCCeEE
Q 001109 546 EDYLVERLYIAGYRDG-----STRIWDATYP-TLSLIHVFGSELPGIRTATESESVSALEFCS--VTLNLAIGSSSGLVW 617 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~Dg-----tVrlWD~~~~-~l~~l~~l~~~~~~i~~~gh~~~V~~lafsp--dg~~Lasgs~dG~V~ 617 (1155)
+|+|+++.|++++.|+ +|++||+.++ ....+..... ......+.+++|+| ||++|++++.||.++
T Consensus 264 ~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~-------~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 264 SWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD-------KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp EECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-------SSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred EEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-------CCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 6789999898888776 9999999988 4332221110 01112356789999 999999999999999
Q ss_pred EEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEE-EEEcCCCCEEEEEeCC-C----cEEEEecCCc
Q 001109 618 LYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICN-LKFSNFGARLAVGFEC-S----QVAMLDISTF 691 (1155)
Q Consensus 618 lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vts-lafSpdg~~LAsGs~D-g----~V~lWDi~~~ 691 (1155)
||.+..... ....+..|...|.+ ++|+|||++|++++.+ + .|..||+.++
T Consensus 337 l~~~~~~~~------------------------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 337 LYLYDTTGR------------------------LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp EEEEETTSC------------------------EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred EEEEECCCC------------------------EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 999873211 11344567777877 8999999987765544 4 6777777776
Q ss_pred cEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCC----ceEEEEECCCCc
Q 001109 692 SVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKD----AHIVVCDSTTGH 759 (1155)
Q Consensus 692 ~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~D----g~I~vwd~~tG~ 759 (1155)
... . +. |...+.+++|+ |||+.|+....+ +.|.+||..+|+
T Consensus 393 ~~~-~---l~-~~~~~~~~~~s----------------------pdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 393 KTK-D---LT-PESGMHRTQLS----------------------PDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CCE-E---SC-CSSSEEEEEEC----------------------TTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred Cce-e---cc-CCCceEEEEEC----------------------CCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 532 2 12 66789999999 899988876554 569999999887
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.77 E-value=3.4e-17 Score=207.22 Aligned_cols=111 Identities=7% Similarity=-0.031 Sum_probs=85.2
Q ss_pred CCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC-CCC---CEEEEEEEcCCcEEEEEecC---------CeEE
Q 001109 42 PSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP-KQL---AFKHLEFLQNQGFLVSISSG---------NEIQ 108 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~---~V~~l~Fs~dg~~LvS~s~D---------g~I~ 108 (1155)
...+.+++|+|||+++++ +.||+|++|+..+.+...... +.. .|..++|+|||++|++++.+ +.|.
T Consensus 16 ~~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 16 KIHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 345778899999998877 689999999987765443333 222 48999999999999999764 7888
Q ss_pred EEECCCCceeeeec---CC-CceeEEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 109 LWDLEARRITSTLP---WE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 109 vWDl~t~~~~~~l~---~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
+||+++++. ..+. .+ ..+.+++|+|||++|+.++. +.|++|+.+.
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~ 143 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG 143 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS
T ss_pred EEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC
Confidence 999999876 2332 22 34889999999999998876 6777775443
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.77 E-value=2.8e-16 Score=178.32 Aligned_cols=191 Identities=11% Similarity=0.128 Sum_probs=130.8
Q ss_pred EEEEEEcCCeEEEEccC---CceEEEEcCCCCCEEEEEEEcCCcEEEEEecC-CeEEEEECC--CCc--eeeeecCCCce
Q 001109 56 LLAIGTQDGRIKVIGGD---NIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG-NEIQLWDLE--ARR--ITSTLPWESNI 127 (1155)
Q Consensus 56 lLAsgs~DG~I~vw~~~---~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D-g~I~vWDl~--t~~--~~~~l~~~~~V 127 (1155)
++++++.|+.|++|+.+ ..+.+....+...+..++|+|+|++|++++.+ +.|.+|+++ +++ .+..+..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 86 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence 44555789999999874 22344444556678899999999999998876 999999998 555 34455556688
Q ss_pred eEEEEecCCCEEEEEeC-CCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCC
Q 001109 128 TAFSVIFGTSYMYIGDE-YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMP 206 (1155)
Q Consensus 128 tsva~spd~~~l~~G~~-dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 206 (1155)
.+++|+|++++|++++. ++.|++|+++ . +........+.
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~-~~~~~~~~~~~-------------------------------------- 126 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLE-D-GLPVGVVDVVE-------------------------------------- 126 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEE-T-TEEEEEEEEEC--------------------------------------
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECC-C-Ccccccccccc--------------------------------------
Confidence 99999999998887765 7889999875 2 11100000000
Q ss_pred CCCCCcccccccccccceeeEEEEeecccccccccccEEEEEE-cCCeEEEEEccC-CeEEEEecccccccccccccCCC
Q 001109 207 PDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVY-ANGLIILWDVSE-DKVVLVRGSKDLQLKTEIVDDPS 284 (1155)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~-~dG~I~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 284 (1155)
....+.+ ++|+|++ ++|+++. .++.|.+||+.+ +++...... . ...
T Consensus 127 ---------~~~~~~~-----~~~s~dg--------~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~--~~~------- 174 (343)
T 1ri6_A 127 ---------GLDGCHS-----ANISPDN--------RTLWVPALKQDRICLFTVSDDGHLVAQDPA-E--VTT------- 174 (343)
T ss_dssp ---------CCTTBCC-----CEECTTS--------SEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E--EEC-------
T ss_pred ---------CCCCceE-----EEECCCC--------CEEEEecCCCCEEEEEEecCCCceeeeccc-c--ccc-------
Confidence 0122334 8899984 4677777 899999999987 655432100 0 000
Q ss_pred CCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE-cCCcEEEEEcCC
Q 001109 285 KNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY-VDGDILLWNLRA 334 (1155)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~-~DG~I~lWd~~s 334 (1155)
.....+.+++|+ |||++|++++ .++.|++|++..
T Consensus 175 ---------------~~~~~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 175 ---------------VEGAGPRHMVFH-PNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp ---------------STTCCEEEEEEC-TTSSEEEEEETTTTEEEEEESSC
T ss_pred ---------------CCCCCcceEEEC-CCCCEEEEEeCCCCEEEEEEecC
Confidence 013457789999 9999776555 789999999853
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.75 E-value=4.9e-16 Score=175.82 Aligned_cols=100 Identities=7% Similarity=-0.004 Sum_probs=80.3
Q ss_pred CEEEEEEcCCeEEEEccCCceEEEEcCCCC---CEEEEEEEcCCcEEEE-EecCCeEEEEECCCCceeeeecCCC-----
Q 001109 55 SLLAIGTQDGRIKVIGGDNIEGLLVSPKQL---AFKHLEFLQNQGFLVS-ISSGNEIQLWDLEARRITSTLPWES----- 125 (1155)
Q Consensus 55 ~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~---~V~~l~Fs~dg~~LvS-~s~Dg~I~vWDl~t~~~~~~l~~~~----- 125 (1155)
++|++++.+++|++||..+.+.+....... .+..++|+|+|++|+. .+.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 578999999999999998877765544333 5789999999977654 4567899999999999887776543
Q ss_pred -ceeEEEEecCCCEEEEEe------------CCCcEEEEEec
Q 001109 126 -NITAFSVIFGTSYMYIGD------------EYGMVYVLKYD 154 (1155)
Q Consensus 126 -~Vtsva~spd~~~l~~G~------------~dG~V~vw~~d 154 (1155)
.+.+++|+|++++|+++. .++.|++|+.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~ 123 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECC
Confidence 678899999999999886 56888777543
No 140
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.75 E-value=1.8e-16 Score=187.62 Aligned_cols=220 Identities=15% Similarity=0.042 Sum_probs=163.3
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCC---eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEE-EEecCC--eEEEEEC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDG---RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLV-SISSGN--EIQLWDL 112 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG---~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~Lv-S~s~Dg--~I~vWDl 112 (1155)
.+|...+.+++|+|+|++||+++.++ +|++|+..+.+......+...+.+++|+|||.+|+ +++.|+ .|.+||+
T Consensus 175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~ 254 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 254 (415)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEEC
Confidence 47888999999999999999999885 99999998776655555677899999999999888 666555 4999999
Q ss_pred CCCceeeeecCCCceeEEEEecCCCEEEEEeC-CCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccc
Q 001109 113 EARRITSTLPWESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREK 191 (1155)
Q Consensus 113 ~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~ 191 (1155)
.++++.........+++++|+|||++|++++. +|..+||.+|...++.. .+..
T Consensus 255 ~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~----~l~~---------------------- 308 (415)
T 2hqs_A 255 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ----RITW---------------------- 308 (415)
T ss_dssp TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE----ECCC----------------------
T ss_pred CCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE----EEec----------------------
Confidence 99876433333478999999999999888775 67667777776553321 0000
Q ss_pred cccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcC---CeEEEEEccCCeEEEEe
Q 001109 192 GKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYAN---GLIILWDVSEDKVVLVR 268 (1155)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~d---G~I~lWd~~~~~~~~~~ 268 (1155)
+... +..++|+|++ ++|+.++.+ +.|.+||+.+++.....
T Consensus 309 ------------------------~~~~-----~~~~~~spdG--------~~l~~~~~~~g~~~i~~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 309 ------------------------EGSQ-----NQDADVSSDG--------KFMVMVSSNGGQQHIAKQDLATGGVQVLS 351 (415)
T ss_dssp ------------------------SSSE-----EEEEEECTTS--------SEEEEEEECSSCEEEEEEETTTCCEEECC
T ss_pred ------------------------CCCc-----ccCeEECCCC--------CEEEEEECcCCceEEEEEECCCCCEEEec
Confidence 0112 2338999984 567777764 58999999988875421
Q ss_pred cccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCC---cEEEEEcCCCCCccccccCC
Q 001109 269 GSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDG---DILLWNLRAAASTKDWKSEN 345 (1155)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG---~I~lWd~~s~~~~~~~~~~~ 345 (1155)
. ...+.+++|+ |||++|++++.|+ .|++||+.+.....
T Consensus 352 ~--------------------------------~~~~~~~~~s-pdg~~l~~~s~~~~~~~l~~~d~~g~~~~~------ 392 (415)
T 2hqs_A 352 S--------------------------------TFLDETPSLA-PNGTMVIYSSSQGMGSVLNLVSTDGRFKAR------ 392 (415)
T ss_dssp C--------------------------------SSSCEEEEEC-TTSSEEEEEEEETTEEEEEEEETTSCCEEE------
T ss_pred C--------------------------------CCCcCCeEEc-CCCCEEEEEEcCCCccEEEEEECCCCcEEE------
Confidence 0 1268899999 9999999999888 79999987543211
Q ss_pred CCCCcccccccCCCCCccEEEEEecc
Q 001109 346 SSTDFGKLQLSSGNRRLPVITLHWSA 371 (1155)
Q Consensus 346 ~~~~i~kl~l~~~~~~~pI~~l~w~~ 371 (1155)
...+...|..++|++
T Consensus 393 -----------l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 393 -----------LPATDGQVKFPAWSP 407 (415)
T ss_dssp -----------CCCSSSEEEEEEECC
T ss_pred -----------eeCCCCCCcCCcccc
Confidence 123556788999986
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.74 E-value=8e-15 Score=167.93 Aligned_cols=165 Identities=10% Similarity=0.108 Sum_probs=114.0
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCC-CCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEE-EeCCCeEEEEEecc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDAT-YPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAI-GSSSGLVWLYNLIK 623 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~-~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Las-gs~dG~V~lwd~~~ 623 (1155)
+++|++++++++..++.|++||+. .+.+..+..+.. .....+..++|+|||++|++ +..++.|++|++..
T Consensus 147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~--------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM--------EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC--------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc--------CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 567888888888889999999998 555433222211 11235788999999996665 55679999999985
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEeecC------CCCeEEEEEcCCCCEE-EEEeCCCcEEEEecCCc---cE
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFSVL------NSPICNLKFSNFGARL-AVGFECSQVAMLDISTF---SV 693 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h------~~~VtslafSpdg~~L-AsGs~Dg~V~lWDi~~~---~~ 693 (1155)
.... + .. ...+..+ ...+.+++|+|||++| +++..++.|.+||+... ..
T Consensus 219 ~~g~--~----------~~---------~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~ 277 (347)
T 3hfq_A 219 QTGA--F----------TQ---------LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTL 277 (347)
T ss_dssp TTTE--E----------EE---------EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEE
T ss_pred CCCc--e----------EE---------eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEE
Confidence 2211 0 00 0111111 1458899999999987 55667899999999732 23
Q ss_pred EEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCC-ceEEEE--ECCCCceeeee
Q 001109 694 LFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKD-AHIVVC--DSTTGHILFSR 764 (1155)
Q Consensus 694 l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~D-g~I~vw--d~~tG~~l~~~ 764 (1155)
+... ..+...+..++|+ |||++|++++.+ +.|.+| |.++|++....
T Consensus 278 ~~~~---~~~~~~~~~~~~s----------------------pdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 278 IQQI---STEGDFPRDFDLD----------------------PTEAFVVVVNQNTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp EEEE---ECSSSCCCEEEEC----------------------TTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred eEEE---ecCCCCcCeEEEC----------------------CCCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence 3222 3355678899998 899988888765 899999 77889876544
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.73 E-value=5e-15 Score=167.95 Aligned_cols=164 Identities=12% Similarity=0.038 Sum_probs=110.8
Q ss_pred ccCCcCcEEEEEE-CCCcEEEEeCCC-CCeeeee--eeCCCcCccccCCCCCCeEEEEEecCCCeEEEEe-CCCeEEEEE
Q 001109 546 EDYLVERLYIAGY-RDGSTRIWDATY-PTLSLIH--VFGSELPGIRTATESESVSALEFCSVTLNLAIGS-SSGLVWLYN 620 (1155)
Q Consensus 546 ~~s~~~~lLaTgs-~DgtVrlWD~~~-~~l~~l~--~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs-~dG~V~lwd 620 (1155)
+++|+++.+++++ .|+.|++||+.. +.+..+. .+.. .....+.+++|+|++++|++++ .++.|++|+
T Consensus 135 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~ 206 (343)
T 1ri6_A 135 NISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT--------VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 206 (343)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC--------STTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc--------CCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 6889998777776 899999999987 6543222 2211 1223688999999999776555 789999999
Q ss_pred eccCccccceeeeccCCceEEEecCCCCCceeEEee-c--CCCCeEEEEEcCCCCEEE-EEeCCCcEEEEecC--Cc--c
Q 001109 621 LIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFS-V--LNSPICNLKFSNFGARLA-VGFECSQVAMLDIS--TF--S 692 (1155)
Q Consensus 621 ~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~-~--h~~~VtslafSpdg~~LA-sGs~Dg~V~lWDi~--~~--~ 692 (1155)
+........ . ...+ ..+. + ....+.+++|+|||++|+ ++..++.|.+||+. ++ .
T Consensus 207 ~~~~~g~~~--~-------~~~~---------~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 207 LKDPHGNIE--C-------VQTL---------DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp SSCTTSCCE--E-------EEEE---------ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred ecCCCCcEE--E-------Eeec---------cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 964221100 0 0000 0011 1 134678899999999877 45579999999998 33 3
Q ss_pred EEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEe-CCceEEEE--ECCCCcee
Q 001109 693 VLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMT-KDAHIVVC--DSTTGHIL 761 (1155)
Q Consensus 693 ~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s-~Dg~I~vw--d~~tG~~l 761 (1155)
.+.... .+. .+..++|+ |||++|++++ .|+.|.+| |..+|+..
T Consensus 269 ~~~~~~---~~~-~~~~~~~s----------------------~dg~~l~~~~~~~~~v~v~~~d~~~g~~~ 314 (343)
T 1ri6_A 269 KEGFQP---TET-QPRGFNVD----------------------HSGKYLIAAGQKSHHISVYEIVGEQGLLH 314 (343)
T ss_dssp EEEEEE---CSS-SCCCEEEC----------------------TTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred Eeeeec---CCC-ccceEEEC----------------------CCCCEEEEecCCCCeEEEEEEcCCCceee
Confidence 333222 233 38889998 8899888887 68999999 66688643
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.72 E-value=4.1e-16 Score=172.19 Aligned_cols=178 Identities=10% Similarity=0.063 Sum_probs=131.7
Q ss_pred EEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC-CceeeeecCC--CceeEEEEecC
Q 001109 59 IGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA-RRITSTLPWE--SNITAFSVIFG 135 (1155)
Q Consensus 59 sgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t-~~~~~~l~~~--~~Vtsva~spd 135 (1155)
.++.|++|++|+..+.+......+...|.+++|+|+|.+|++++ ++.|.+||+.+ ++.......+ ..+.+++|+|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 34578999999998877665555677899999999999998876 88999999999 8776665554 67899999999
Q ss_pred CCEEEEEe--CCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcc
Q 001109 136 TSYMYIGD--EYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFI 213 (1155)
Q Consensus 136 ~~~l~~G~--~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (1155)
+++|+++. .++.++||.++...+... .+.
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~----~~~--------------------------------------------- 126 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPR----LMT--------------------------------------------- 126 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCE----ECC---------------------------------------------
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceE----Eee---------------------------------------------
Confidence 99999998 456788888887543211 000
Q ss_pred cccccccccceeeEEEEeecccccccccccEEE-EEEcCCeEEEEEcc--CCeEEEEecccccccccccccCCCCCCCCC
Q 001109 214 DFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLL-LVYANGLIILWDVS--EDKVVLVRGSKDLQLKTEIVDDPSKNAGHN 290 (1155)
Q Consensus 214 ~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~ll-sg~~dG~I~lWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1155)
....+.. +.|+|++ ++|+ ++..++.++||++. ++......
T Consensus 127 --~~~~~~~-----~~~spdg--------~~l~~~~~~~~~~~l~~~~~~~~~~~~~~---------------------- 169 (297)
T 2ojh_A 127 --KNLPSYW-----HGWSPDG--------KSFTYCGIRDQVFDIYSMDIDSGVETRLT---------------------- 169 (297)
T ss_dssp --SSSSEEE-----EEECTTS--------SEEEEEEEETTEEEEEEEETTTCCEEECC----------------------
T ss_pred --cCCCccc-----eEECCCC--------CEEEEEECCCCceEEEEEECCCCcceEcc----------------------
Confidence 0112333 8899985 3455 78889999999964 34433210
Q ss_pred CcccccccccccCCccEEEEEecCCCeEEEEE-cCCcEEEEEcC
Q 001109 291 LSETVSDNEQVEKEISSLCWASNDGSVLAVGY-VDGDILLWNLR 333 (1155)
Q Consensus 291 ~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~-~DG~I~lWd~~ 333 (1155)
.+...+.+++|+ |||+.|++++ .|+.+++|++.
T Consensus 170 ---------~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 170 ---------HGEGRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp ---------CSSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEE
T ss_pred ---------cCCCccccceEC-CCCCEEEEEecCCCCccEEEEC
Confidence 025678999999 9999888776 58899999875
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.71 E-value=7.8e-16 Score=189.95 Aligned_cols=153 Identities=7% Similarity=-0.031 Sum_probs=106.8
Q ss_pred CCCEEEEEEEcCCcEEEEEec-CCeEEEEECCCCceeeeecCC-CceeEEEEecCCCEEEEEeC---CCcEEEEEecC--
Q 001109 83 QLAFKHLEFLQNQGFLVSISS-GNEIQLWDLEARRITSTLPWE-SNITAFSVIFGTSYMYIGDE---YGMVYVLKYDT-- 155 (1155)
Q Consensus 83 ~~~V~~l~Fs~dg~~LvS~s~-Dg~I~vWDl~t~~~~~~l~~~-~~Vtsva~spd~~~l~~G~~---dG~V~vw~~d~-- 155 (1155)
..+|..++|+|||++|+.++. |++++||+++++........+ ..+.+++|+|| +++++++. +...++|.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999999887 999999999777665544455 57999999999 88888775 44567777766
Q ss_pred CCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccc
Q 001109 156 EEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKH 235 (1155)
Q Consensus 156 ~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~ 235 (1155)
...... +.. ...+.. .+|+|++.
T Consensus 100 ~g~~~~-----l~~-----------------------------------------------~~~~~~-----~~~s~dg~ 122 (582)
T 3o4h_A 100 PGEEQR-----LEA-----------------------------------------------VKPMRI-----LSGVDTGE 122 (582)
T ss_dssp TTCCEE-----CTT-----------------------------------------------SCSBEE-----EEEEECSS
T ss_pred CCcccc-----ccC-----------------------------------------------CCCcee-----eeeCCCCC
Confidence 321110 000 011112 67888765
Q ss_pred ccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCC
Q 001109 236 VNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDG 315 (1155)
Q Consensus 236 ~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG 315 (1155)
+ .+++...++.+.|||+.+++...... +.. .+++|+ |||
T Consensus 123 ~-------~~~~s~~~~~~~l~d~~~g~~~~l~~-------------------------------~~~--~~~~~s-pDG 161 (582)
T 3o4h_A 123 A-------VVFTGATEDRVALYALDGGGLRELAR-------------------------------LPG--FGFVSD-IRG 161 (582)
T ss_dssp C-------EEEEEECSSCEEEEEEETTEEEEEEE-------------------------------ESS--CEEEEE-EET
T ss_pred e-------EEEEecCCCCceEEEccCCcEEEeec-------------------------------CCC--ceEEEC-CCC
Confidence 3 44455555556699999988765421 112 789999 999
Q ss_pred CeEEEEEcC----CcEEEEEcCC
Q 001109 316 SVLAVGYVD----GDILLWNLRA 334 (1155)
Q Consensus 316 ~~lasg~~D----G~I~lWd~~s 334 (1155)
++||+++.| +.|++||+.+
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~ 184 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSS 184 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTT
T ss_pred CEEEEEEEcCCCCeEEEEEcCCC
Confidence 999988877 6677777654
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.71 E-value=9.8e-16 Score=169.11 Aligned_cols=144 Identities=9% Similarity=0.006 Sum_probs=107.3
Q ss_pred ccCCcCcEEE-EEECCCcEEEEeCC--CCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEe-CCCeEEEEEe
Q 001109 546 EDYLVERLYI-AGYRDGSTRIWDAT--YPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGS-SSGLVWLYNL 621 (1155)
Q Consensus 546 ~~s~~~~lLa-Tgs~DgtVrlWD~~--~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs-~dG~V~lwd~ 621 (1155)
.++|+++.|+ +++.|+.+++|++. .+... .+ ..|...+.+++|+|+++.|++++ .++.+++|++
T Consensus 135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~---------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~ 202 (297)
T 2ojh_A 135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---RL---------THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRV 202 (297)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTTCCEE---EC---------CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EECCCCCEEEEEECCCCceEEEEEECCCCcce---Ec---------ccCCCccccceECCCCCEEEEEecCCCCccEEEE
Confidence 5678887666 88899999999853 33321 11 14556899999999999888766 5899999998
Q ss_pred ccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCC-----------CcEEEEecCC
Q 001109 622 IKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFEC-----------SQVAMLDIST 690 (1155)
Q Consensus 622 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~D-----------g~V~lWDi~~ 690 (1155)
...... ...+..|...+.+++|+|+|++||+++.+ +.|.+||+.+
T Consensus 203 ~~~~~~------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 203 RVDGSS------------------------VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp ETTSSC------------------------EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred CCCCCC------------------------cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 742110 13445677789999999999999998876 5699999998
Q ss_pred ccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCc
Q 001109 691 FSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDA 748 (1155)
Q Consensus 691 ~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg 748 (1155)
+....... +.+|...|.+++|+ ||++.|++++.|.
T Consensus 259 ~~~~~~~~-~~~~~~~~~~~~~s----------------------pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 259 GNVETLFD-LFGGQGTMNSPNWS----------------------PDGDEFAYVRYFP 293 (297)
T ss_dssp CSCEEEEE-EEESTTTSCSCCBC----------------------TTSSEEEEEEECC
T ss_pred CCceeeec-cCCCCcccccceEC----------------------CCCCEEEEEEecc
Confidence 76532211 23578889999998 8999998887764
No 146
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.71 E-value=5.5e-16 Score=196.20 Aligned_cols=166 Identities=18% Similarity=0.271 Sum_probs=104.9
Q ss_pred EEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCC----ceeEEEEecCCCEEEEEeC---------CCcEEEEEec
Q 001109 88 HLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWES----NITAFSVIFGTSYMYIGDE---------YGMVYVLKYD 154 (1155)
Q Consensus 88 ~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~----~Vtsva~spd~~~l~~G~~---------dG~V~vw~~d 154 (1155)
.++|+|+|. ++..+.|++|++||+.+++....+..+. .+.+++|+|||++|+.++. ++.|++|+.+
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 679999985 5555579999999999998876665543 3899999999999998876 6778777544
Q ss_pred CCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecc
Q 001109 155 TEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQK 234 (1155)
Q Consensus 155 ~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~ 234 (1155)
. ++.. +... ....+.. ++|+|++
T Consensus 99 ~--g~~~------~~~~--------------------------------------------l~~~~~~-----~~~SPDG 121 (719)
T 1z68_A 99 N--GEFV------RGNE--------------------------------------------LPRPIQY-----LCWSPVG 121 (719)
T ss_dssp T--TEEC------CSSC--------------------------------------------CCSSBCC-----EEECSST
T ss_pred C--Cccc------ccee--------------------------------------------cCccccc-----ceECCCC
Confidence 3 3321 0000 0112333 8999984
Q ss_pred cccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecC
Q 001109 235 HVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASND 314 (1155)
Q Consensus 235 ~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pd 314 (1155)
++|+.+. ++.|++||+.+++......... .. .+. .|+. +-..+ +.-.....+++|+ ||
T Consensus 122 --------~~la~~~-~~~i~~~~~~~g~~~~l~~~~~--~~-~v~------~g~~--~~v~~-ee~~~~~~~~~wS-PD 179 (719)
T 1z68_A 122 --------SKLAYVY-QNNIYLKQRPGDPPFQITFNGR--EN-KIF------NGIP--DWVYE-EEMLATKYALWWS-PN 179 (719)
T ss_dssp --------TCEEEEE-TTEEEEESSTTSCCEECCCCCB--TT-TEE------ESSC--CHHHH-HHTTCSSCCEEEC-TT
T ss_pred --------CEEEEEE-CCeEEEEeCCCCCcEEEecCCC--cC-CeE------cccc--cceee-eecccCcccEEEC-CC
Confidence 4677774 7899999999887654311000 00 000 0000 00000 0001223689999 99
Q ss_pred CCeEEEEEcC-CcEEEEEcC
Q 001109 315 GSVLAVGYVD-GDILLWNLR 333 (1155)
Q Consensus 315 G~~lasg~~D-G~I~lWd~~ 333 (1155)
|++||+++.| +.+.+|.+.
T Consensus 180 G~~la~~~~d~~~~~~~~~~ 199 (719)
T 1z68_A 180 GKFLAYAEFNDTDIPVIAYS 199 (719)
T ss_dssp SSEEEEEEEECTTSCEEEEE
T ss_pred CCEEEEEEECCCCCceEEee
Confidence 9999998876 566777654
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.70 E-value=3.5e-15 Score=168.83 Aligned_cols=156 Identities=8% Similarity=-0.080 Sum_probs=113.6
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCe----------
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGL---------- 615 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~---------- 615 (1155)
+++|+++.|+++ ++.|++||+.++... ..+... .+..++ +|+||++.|++.+..+.
T Consensus 141 ~~s~dg~~l~~~--~~~i~~~d~~~~~~~--~~~~~~-------~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~ 206 (337)
T 1pby_B 141 AWARDGSKLYGL--GRDLHVMDPEAGTLV--EDKPIQ-------SWEAET---YAQPDVLAVWNQHESSGVMATPFYTAR 206 (337)
T ss_dssp EECTTSSCEEEE--SSSEEEEETTTTEEE--EEECST-------TTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred EECCCCCEEEEe--CCeEEEEECCCCcEe--eeeecc-------ccCCCc---eeCCCccEEeeeccCCCceeeeeeccc
Confidence 678898877777 789999999887632 222211 111232 78999998766654432
Q ss_pred --------------EEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 001109 616 --------------VWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECS 681 (1155)
Q Consensus 616 --------------V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg 681 (1155)
|.+||+.++.. ....+..|...+.+++|+|||++|+++ ++
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~------------------------~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~ 260 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEM------------------------AMREVRIMDVFYFSTAVNPAKTRAFGA--YN 260 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCE------------------------EEEEEEECSSCEEEEEECTTSSEEEEE--ES
T ss_pred cccccccccccccceEEEeCCCCCc------------------------eEeecCCCCCceeeEEECCCCCEEEEe--CC
Confidence 34444433211 112345667788999999999999988 79
Q ss_pred cEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCcee
Q 001109 682 QVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHIL 761 (1155)
Q Consensus 682 ~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l 761 (1155)
.|.+||+.+++.+..... ...+.+++|+ |||+.|++++.|+.|.+||+.+|+.+
T Consensus 261 ~v~~~d~~~~~~~~~~~~----~~~~~~~~~s----------------------~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPL----PHSYYSVNVS----------------------TDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEEETTTTEEEEEEEC----SSCCCEEEEC----------------------TTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred eEEEEECCCCcCcceecC----CCceeeEEEC----------------------CCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 999999999887765432 3467899998 89999999999999999999999999
Q ss_pred eeeecc
Q 001109 762 FSRSIH 767 (1155)
Q Consensus 762 ~~~~~~ 767 (1155)
...+..
T Consensus 315 ~~~~~~ 320 (337)
T 1pby_B 315 GQVDLP 320 (337)
T ss_dssp EEEECG
T ss_pred EEEEcC
Confidence 887554
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.2e-15 Score=193.05 Aligned_cols=107 Identities=10% Similarity=0.033 Sum_probs=83.9
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCC----CCEEEEEEEcCCcEEEEEec---------CCeEEEEECC
Q 001109 47 ILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQ----LAFKHLEFLQNQGFLVSISS---------GNEIQLWDLE 113 (1155)
Q Consensus 47 ~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~----~~V~~l~Fs~dg~~LvS~s~---------Dg~I~vWDl~ 113 (1155)
.++|+|+|++++++ .||+|++|+..+.+......+. ..+..++|||||++|+.++. +++|++||++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 67999999776655 6999999999877655444322 24889999999999998876 7899999999
Q ss_pred CCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 114 ARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 114 t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
+++.+...+....+.+++|+|||++|+.+. +++|++|+.+.
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~ 139 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG 139 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCC
Confidence 998743233346789999999999999885 67888885544
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.67 E-value=2.7e-14 Score=161.91 Aligned_cols=162 Identities=11% Similarity=0.023 Sum_probs=105.3
Q ss_pred ccCCcCc-EEEEEECCCc-EEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEE-eCCCeEEEEEec
Q 001109 546 EDYLVER-LYIAGYRDGS-TRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIG-SSSGLVWLYNLI 622 (1155)
Q Consensus 546 ~~s~~~~-lLaTgs~Dgt-VrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasg-s~dG~V~lwd~~ 622 (1155)
+++|+++ +++++..++. |++|++...... ....... + .+...+.+++|+|||++|+++ ..++.|++||+.
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~--~~~~~~~--~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVL--FDTGQEF--I---SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCE--EEEEEEE--E---CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcE--eecCCcc--c---cCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 6788886 6667677788 999998754311 0000000 0 122357999999999966555 468999999997
Q ss_pred cCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEecCCccE--EEEecc
Q 001109 623 KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF-ECSQVAMLDISTFSV--LFITDS 699 (1155)
Q Consensus 623 ~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs-~Dg~V~lWDi~~~~~--l~~~~~ 699 (1155)
++... +.+..+. +...+.+++|+|||++|++++ .++.|.+||+.++++ +.....
T Consensus 207 ~~~~~----------------------~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~ 263 (331)
T 3u4y_A 207 NPENI----------------------TLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH 263 (331)
T ss_dssp STTSC----------------------EEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCccc----------------------ceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence 65320 0012222 335678899999999776554 578899999998877 322211
Q ss_pred -CCCCCCC---eeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC-CceEEEEECCCCc
Q 001109 700 -LSNSNSP---VLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK-DAHIVVCDSTTGH 759 (1155)
Q Consensus 700 -~~~h~~~---V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~-Dg~I~vwd~~tG~ 759 (1155)
+..+..+ +..++|+ |||+.|++++. +++|.|||+.+..
T Consensus 264 ~~~~~~~~~~~~~~~~~s----------------------pdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 264 GLLIDPRPLFGANQMALN----------------------KTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CCCCCCGGGTTCCCEEEC----------------------TTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ccccCCCCcccccceEEC----------------------CCCCEEEEecCCCCcEEEEEecCCc
Confidence 0011222 2457888 89998876655 5699999998644
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.66 E-value=4.3e-14 Score=160.83 Aligned_cols=82 Identities=11% Similarity=0.032 Sum_probs=69.3
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCC
Q 001109 658 LNSPICNLKFSN-FGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDT 736 (1155)
Q Consensus 658 h~~~VtslafSp-dg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~p 736 (1155)
+...+.+++|+| ||++|+++ ++.|.+||+.+++.+..... ...+.+++|+ |
T Consensus 253 ~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s----------------------~ 304 (349)
T 1jmx_B 253 LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL----DHTYYCVAFD----------------------K 304 (349)
T ss_dssp CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEEC----------------------S
T ss_pred CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC----CCCccceEEC----------------------C
Confidence 455788999999 99999988 88999999999888765532 3357789998 8
Q ss_pred CCcEEEEEeCCceEEEEECCCCceeeeeecc
Q 001109 737 KKETLFFMTKDAHIVVCDSTTGHILFSRSIH 767 (1155)
Q Consensus 737 d~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~ 767 (1155)
||+.|++++.|+.|.+||..+++.+...++.
T Consensus 305 dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 305 KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 8988999999999999999999998887554
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.66 E-value=4.5e-14 Score=161.12 Aligned_cols=144 Identities=13% Similarity=0.050 Sum_probs=105.6
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC-CeEEEEEeccC
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS-GLVWLYNLIKS 624 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d-G~V~lwd~~~~ 624 (1155)
+++|+++.++++..|+.|.+||..++.... .+... ..++...+..++|+|++++|++++.+ +.|.+||+.++
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~--~~~~~-----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELITIDTADNKILS--RKKLL-----DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp EEETTTTEEEEECTTSEEEEEETTTTEEEE--EEECC-----CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCeEEE--EEEcC-----CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 678999999999999999999998876432 22110 11345578899999999988777654 99999999765
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEecCCccEEEEeccCCCC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF-ECSQVAMLDISTFSVLFITDSLSNS 703 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs-~Dg~V~lWDi~~~~~l~~~~~~~~h 703 (1155)
... ..+..+. -.+++|+|||+++.+++ .++.|.+||+.+++++.....
T Consensus 264 ~~~-------------------------~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---- 312 (353)
T 3vgz_A 264 NIL-------------------------AKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---- 312 (353)
T ss_dssp CEE-------------------------EEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC----
T ss_pred cEE-------------------------EEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec----
Confidence 321 1112111 24699999999665555 799999999999988766542
Q ss_pred CCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCce
Q 001109 704 NSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAH 749 (1155)
Q Consensus 704 ~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~ 749 (1155)
...+.+++|+ |||+.|+++..++.
T Consensus 313 ~~~~~~~~~s----------------------~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 313 PTHPNSLALS----------------------ADGKTLYVSVKQKS 336 (353)
T ss_dssp CSEEEEEEEC----------------------TTSCEEEEEEECCC
T ss_pred CCCCCeEEEc----------------------CCCCEEEEEEcccc
Confidence 3467899998 89998888877753
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.66 E-value=2.9e-15 Score=178.23 Aligned_cols=177 Identities=15% Similarity=0.079 Sum_probs=128.8
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCe--------eeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEE----EEeCC
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTL--------SLIHVFGSELPGIRTATESESVSALEFCSVTLNLA----IGSSS 613 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l--------~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~La----sgs~d 613 (1155)
++++++.++++|+.|+ |++|+...... ..+..... . ..-.+..+|++++|+|+|++|| +|+.|
T Consensus 43 avs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 43 AVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ---G-LLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp EEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCC---C-EEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred EEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCc---c-ccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 7788889999999998 99987532110 00000000 0 0013456899999999999999 78889
Q ss_pred CeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEecCCcc
Q 001109 614 GLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF-GARLAVGFECSQVAMLDISTFS 692 (1155)
Q Consensus 614 G~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd-g~~LAsGs~Dg~V~lWDi~~~~ 692 (1155)
|.|+|||+........ ....-......+.+|.+.|++|+|+|+ +.+||+|+.||+|+|||++++.
T Consensus 118 ~~v~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAK--------------QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp EEEEEEEHHHHHCTTC--------------SSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred ceEEEEEccccccCCc--------------CCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 9999999976410000 000001112455789999999999998 8899999999999999999886
Q ss_pred EEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeecc
Q 001109 693 VLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIH 767 (1155)
Q Consensus 693 ~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~ 767 (1155)
.+... .+|...|.+++|+ |||++|++|+.|++|++||.. |+.....+.+
T Consensus 184 ~~~~~---~~~~~~v~~v~ws----------------------pdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~ 232 (434)
T 2oit_A 184 KVCAT---LPSTVAVTSVCWS----------------------PKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP 232 (434)
T ss_dssp EEEEE---ECGGGCEEEEEEC----------------------TTSSCEEEEETTSCEEEECTT-CCEEEEECCC
T ss_pred ceeec---cCCCCceeEEEEc----------------------CCCCEEEEEcCCCcEEEEccC-CcccccccCC
Confidence 65433 3588999999999 889999999999999999998 6666555433
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.65 E-value=1.1e-14 Score=179.77 Aligned_cols=193 Identities=10% Similarity=-0.025 Sum_probs=134.8
Q ss_pred CCCceEEEEcCCCCEEEEEEc-CCeEEEEccCCceEEEEcCCC-CCEEEEEEEcCCcEEEEEec---CCeEEEEECCC--
Q 001109 42 PSTASILAFDHVQSLLAIGTQ-DGRIKVIGGDNIEGLLVSPKQ-LAFKHLEFLQNQGFLVSISS---GNEIQLWDLEA-- 114 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~-DG~I~vw~~~~~~~~~~~~~~-~~V~~l~Fs~dg~~LvS~s~---Dg~I~vWDl~t-- 114 (1155)
...|.+++|+|||++||+++. ||+++||+.++.+......+. ..+..+.|+|| +.+++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 456999999999999999887 999999998777665544444 57999999999 77777765 45566665543
Q ss_pred -CceeeeecCCCceeEEEEecCCCE-EEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccc
Q 001109 115 -RRITSTLPWESNITAFSVIFGTSY-MYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKG 192 (1155)
Q Consensus 115 -~~~~~~l~~~~~Vtsva~spd~~~-l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~ 192 (1155)
+... .+.....+...+|+|+++. +++...++.+.+|+++.. ++. .+. .
T Consensus 100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g--~~~----~l~-----------------------~ 149 (582)
T 3o4h_A 100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG--GLR----ELA-----------------------R 149 (582)
T ss_dssp TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT--EEE----EEE-----------------------E
T ss_pred CCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC--cEE----Eee-----------------------c
Confidence 2222 4444444567788998863 344444555558866543 221 000 0
Q ss_pred ccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcC----CeEEEEEccCCeEEEEe
Q 001109 193 KAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYAN----GLIILWDVSEDKVVLVR 268 (1155)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~d----G~I~lWd~~~~~~~~~~ 268 (1155)
... .. ++|+|+ | ++|+.++.+ +.|.+||+.+++.....
T Consensus 150 -----------------------~~~--~~-----~~~spD--G------~~la~~~~~~~~~~~i~~~d~~~g~~~~l~ 191 (582)
T 3o4h_A 150 -----------------------LPG--FG-----FVSDIR--G------DLIAGLGFFGGGRVSLFTSNLSSGGLRVFD 191 (582)
T ss_dssp -----------------------ESS--CE-----EEEEEE--T------TEEEEEEEEETTEEEEEEEETTTCCCEEEC
T ss_pred -----------------------CCC--ce-----EEECCC--C------CEEEEEEEcCCCCeEEEEEcCCCCCceEee
Confidence 011 33 889998 4 678888777 78999999988866541
Q ss_pred cccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCC--cEEEEEcCCC
Q 001109 269 GSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDG--DILLWNLRAA 335 (1155)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG--~I~lWd~~s~ 335 (1155)
. +...+.+++|+ |||++||++..|| .|++||+.++
T Consensus 192 ~-------------------------------~~~~~~~~~~S-pDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 192 S-------------------------------GEGSFSSASIS-PGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp C-------------------------------SSCEEEEEEEC-TTSCEEEEEECSSCEEEEEECTTTC
T ss_pred c-------------------------------CCCccccceEC-CCCCEEEEccCCCeeEEEEEcCCCC
Confidence 1 25567899999 9999999888888 7888887643
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.64 E-value=6.1e-13 Score=153.23 Aligned_cols=167 Identities=11% Similarity=0.034 Sum_probs=111.4
Q ss_pred ccCCcCc-EEEEEECCCcEEEEeCCCCC-------eeee---eeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEe-CC
Q 001109 546 EDYLVER-LYIAGYRDGSTRIWDATYPT-------LSLI---HVFGSELPGIRTATESESVSALEFCSVTLNLAIGS-SS 613 (1155)
Q Consensus 546 ~~s~~~~-lLaTgs~DgtVrlWD~~~~~-------l~~l---~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs-~d 613 (1155)
+++|+++ +++++..++.|++|++.... +... .... ..+...+.+++|+|||++|++++ .+
T Consensus 161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~ 232 (361)
T 3scy_A 161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK--------VAPGSGPRHLIFNSDGKFAYLINEIG 232 (361)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE--------CCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee--------cCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence 5678887 45555668999999886543 2211 1111 02234678999999999888777 68
Q ss_pred CeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEecC--
Q 001109 614 GLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFEC--SQVAMLDIS-- 689 (1155)
Q Consensus 614 G~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~D--g~V~lWDi~-- 689 (1155)
+.|.+|++..+... . +.. ......+.....+++|||||++|+++..+ +.|.||++.
T Consensus 233 ~~v~v~~~~~g~~~----~-------~~~---------~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~ 292 (361)
T 3scy_A 233 GTVIAFRYADGMLD----E-------IQT---------VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET 292 (361)
T ss_dssp CEEEEEEEETTEEE----E-------EEE---------EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT
T ss_pred CeEEEEEecCCceE----E-------eEE---------EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC
Confidence 99999999854211 0 000 01112334456899999999998776654 899999996
Q ss_pred CccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEe-CCceEEE--EECCCCceeeee
Q 001109 690 TFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMT-KDAHIVV--CDSTTGHILFSR 764 (1155)
Q Consensus 690 ~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s-~Dg~I~v--wd~~tG~~l~~~ 764 (1155)
++........ .. ...+.+++|+ |||++|++++ .++.|.+ ||.++|++....
T Consensus 293 ~g~~~~~~~~-~~-g~~~~~~~~s----------------------pdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 293 NGTLTKVGYQ-LT-GIHPRNFIIT----------------------PNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp TCCEEEEEEE-EC-SSCCCEEEEC----------------------TTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred CCcEEEeeEe-cC-CCCCceEEEC----------------------CCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 4443221111 11 4567899998 8999888887 6789999 577789876554
No 155
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.63 E-value=1.8e-14 Score=163.45 Aligned_cols=203 Identities=11% Similarity=0.096 Sum_probs=141.8
Q ss_pred CCCceEEEEcCCCCEEEEEEc-CCeEEEEccCCceE-EEEc-CCCCCEEEEEEEcCCcEEEEEecC-C--eEEEEECCCC
Q 001109 42 PSTASILAFDHVQSLLAIGTQ-DGRIKVIGGDNIEG-LLVS-PKQLAFKHLEFLQNQGFLVSISSG-N--EIQLWDLEAR 115 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~-DG~I~vw~~~~~~~-~~~~-~~~~~V~~l~Fs~dg~~LvS~s~D-g--~I~vWDl~t~ 115 (1155)
...+ .++|+|+|++|++++. +++|.+|+..+.+. .... .+..++.+++|+|+|++|++...+ + .|.+||+.++
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN 118 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence 3445 9999999996666655 89999999876654 3332 233444449999999999954444 2 8999999999
Q ss_pred ceeeeecCCCceeEEEEecCCCEEEEEe-CCCc-EEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccc
Q 001109 116 RITSTLPWESNITAFSVIFGTSYMYIGD-EYGM-VYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGK 193 (1155)
Q Consensus 116 ~~~~~l~~~~~Vtsva~spd~~~l~~G~-~dG~-V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~ 193 (1155)
+.+..+.....+.+++|+|+|+++++++ .++. |++|+++... .+... ....
T Consensus 119 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g-~~~~~----~~~~---------------------- 171 (331)
T 3u4y_A 119 KFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG-VLFDT----GQEF---------------------- 171 (331)
T ss_dssp EEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC-CEEEE----EEEE----------------------
T ss_pred CeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCC-cEeec----CCcc----------------------
Confidence 9988888777889999999999776664 5578 9999887532 22100 0000
Q ss_pred cccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEE-cCCeEEEEEccCCeE---EEEec
Q 001109 194 AAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVY-ANGLIILWDVSEDKV---VLVRG 269 (1155)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~-~dG~I~lWd~~~~~~---~~~~~ 269 (1155)
++ ......+ ++|+|++ ++++++. .++.|.+||+.+++. +....
T Consensus 172 -----------~~---------~~~~~~~-----~~~spdg--------~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~ 218 (331)
T 3u4y_A 172 -----------IS---------GGTRPFN-----ITFTPDG--------NFAFVANLIGNSIGILETQNPENITLLNAVG 218 (331)
T ss_dssp -----------EC---------SSSSEEE-----EEECTTS--------SEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred -----------cc---------CCCCccc-----eEECCCC--------CEEEEEeCCCCeEEEEECCCCcccceeeecc
Confidence 00 0111223 8999984 4455554 689999999998876 43211
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE-cCCcEEEEEcCCCCC
Q 001109 270 SKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY-VDGDILLWNLRAAAS 337 (1155)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~-~DG~I~lWd~~s~~~ 337 (1155)
....+..++|+ |||++|+++. .++.|.+||+.++..
T Consensus 219 -------------------------------~~~~~~~~~~s-pdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 219 -------------------------------TNNLPGTIVVS-RDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp -------------------------------CSSCCCCEEEC-TTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred -------------------------------CCCCCceEEEC-CCCCEEEEEEcCCCEEEEEECCCCce
Confidence 13456789999 9999776655 578899999987654
No 156
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.63 E-value=5.4e-16 Score=128.59 Aligned_cols=60 Identities=30% Similarity=0.459 Sum_probs=55.3
Q ss_pred CCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001109 1084 RTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRME 1148 (1155)
Q Consensus 1084 ~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~ 1148 (1155)
++++.++.+ +++|++||.+||+||+||||||+.|++||++|+++|++|+++|++|++|||
T Consensus 4 ~~i~~v~~q-----v~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Kyk 63 (63)
T 1urq_A 4 GGIEGVKGA-----ASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYK 63 (63)
T ss_dssp --CHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367888988 889999999999999999999999999999999999999999999999964
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.62 E-value=2.4e-13 Score=157.50 Aligned_cols=171 Identities=7% Similarity=-0.059 Sum_probs=109.6
Q ss_pred ccCCcCcEEEEEE-CCCcEEEEeCC-CCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeC-CCeEEEEEec
Q 001109 546 EDYLVERLYIAGY-RDGSTRIWDAT-YPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSS-SGLVWLYNLI 622 (1155)
Q Consensus 546 ~~s~~~~lLaTgs-~DgtVrlWD~~-~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~-dG~V~lwd~~ 622 (1155)
+++|+|++|+++. .+++|++||+. ++.+..+..+. ...|...+..++|+|||++|++++. ++.|.+|+++
T Consensus 151 ~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe-------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 5678887666654 47899999998 67654333221 1112346899999999999988775 6899999986
Q ss_pred cCccccceeeeccCCceEEEecCCCCCceeEEeecCCC------CeEEEE-EcCCCCEEEEEeCCC------cEEEEecC
Q 001109 623 KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNS------PICNLK-FSNFGARLAVGFECS------QVAMLDIS 689 (1155)
Q Consensus 623 ~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~------~Vtsla-fSpdg~~LAsGs~Dg------~V~lWDi~ 689 (1155)
..... +.... ..+..+. . .+.+|.. .+.+++ |||||++|++++.+. +|.+|++.
T Consensus 224 ~~~g~--~~~~~---~~~~~~~--~------~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 224 PATHM--PVYTH---HSFPLIP--P------GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp TTTCC--EEEEE---EEEESSC--T------TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred CCCCc--EEEcc---ceEEcCC--C------CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 42110 00000 0000000 0 0122333 588999 999999988776533 89999996
Q ss_pred -CccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCC---CCcEEEEEeCC-ceEEEEECCCC
Q 001109 690 -TFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDT---KKETLFFMTKD-AHIVVCDSTTG 758 (1155)
Q Consensus 690 -~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~p---d~~~L~s~s~D-g~I~vwd~~tG 758 (1155)
++.+.........+...+..++|+ | ||++|+++..+ ++|.||+.+..
T Consensus 291 ~~g~~~~~~~~~~~~~~~~~~~a~s----------------------p~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 291 DCGSIEKQLFLSPTPTSGGHSNAVS----------------------PCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSCEEEEEEEEECSSCCTTCCCEE----------------------ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCEEEeeeeeecCCCCcccceec----------------------CCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 565432111111244456678888 6 79999999875 89999998765
No 158
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.61 E-value=3.3e-13 Score=153.93 Aligned_cols=206 Identities=14% Similarity=0.125 Sum_probs=149.5
Q ss_pred CCCCceEEEEcCCCCEEEEEEc-------CCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEE-ecCCeEEEEEC
Q 001109 41 IPSTASILAFDHVQSLLAIGTQ-------DGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSI-SSGNEIQLWDL 112 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~-------DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~-s~Dg~I~vWDl 112 (1155)
+...+..++|+|+|++|++++. +++|.+||..+.+.+........+..++|+|+|++|+.+ ..++.|.+||+
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456889999999999888874 568999999887766555444457789999999866655 45799999999
Q ss_pred CCCceeeeecCCC----------ceeEEEEecCCCEEEEEe--CCCcEEEEEecCCCceeeccceeccCCceeeeceeEe
Q 001109 113 EARRITSTLPWES----------NITAFSVIFGTSYMYIGD--EYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLL 180 (1155)
Q Consensus 113 ~t~~~~~~l~~~~----------~Vtsva~spd~~~l~~G~--~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l 180 (1155)
.+++.+..+..+. .+.+++|+|+++++++++ .++.|++| |...++.. ..++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~--d~~~~~~~---~~~~~----------- 182 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV--DGGNIKLK---TAIQN----------- 182 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE--ETTTTEEE---EEECC-----------
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE--cCCCCceE---EEecC-----------
Confidence 9999888776542 278899999999988887 36767666 54444332 00100
Q ss_pred eEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEcc
Q 001109 181 EFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVS 260 (1155)
Q Consensus 181 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~ 260 (1155)
....+.+ ++|+|++ ++++++..++.|.+||+.
T Consensus 183 -----------------------------------~~~~~~~-----~~~s~dg--------~~l~~~~~~~~i~~~d~~ 214 (353)
T 3vgz_A 183 -----------------------------------TGKMSTG-----LALDSEG--------KRLYTTNADGELITIDTA 214 (353)
T ss_dssp -----------------------------------CCTTCCC-----CEEETTT--------TEEEEECTTSEEEEEETT
T ss_pred -----------------------------------CCCccce-----EEECCCC--------CEEEEEcCCCeEEEEECC
Confidence 0111233 8899974 579999999999999999
Q ss_pred CCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcC-CcEEEEEcCCCCC
Q 001109 261 EDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVD-GDILLWNLRAAAS 337 (1155)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~D-G~I~lWd~~s~~~ 337 (1155)
+++.+..... . ..+ +...+.+++|+ |||++|+++..+ +.|.+||+.++..
T Consensus 215 ~~~~~~~~~~-----~---------~~~------------~~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 215 DNKILSRKKL-----L---------DDG------------KEHFFINISLD-TARQRAFITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp TTEEEEEEEC-----C---------CSS------------SCCCEEEEEEE-TTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred CCeEEEEEEc-----C---------CCC------------CCcccceEEEC-CCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 9988764211 0 000 24457789999 999987777654 9999999987653
No 159
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.60 E-value=1.3e-15 Score=132.31 Aligned_cols=66 Identities=24% Similarity=0.615 Sum_probs=61.1
Q ss_pred CCCCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001109 1080 KPKSRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154 (1155)
Q Consensus 1080 ~~~~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~ 1154 (1155)
.|..+++.+|+.+ |+||+.||.+||++|++|||||+.|++||++|+++|..|++.|++|+|+ |||+
T Consensus 4 ~~~~d~l~~vq~e-----l~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~----~ww~ 69 (74)
T 2nps_A 4 GPRNDKIKHVQNQ-----VDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ----MWWR 69 (74)
T ss_dssp --CCSSSHHHHTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCC-
T ss_pred chhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3567889999988 8999999999999999999999999999999999999999999999999 9997
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.59 E-value=1.2e-14 Score=173.04 Aligned_cols=204 Identities=16% Similarity=0.121 Sum_probs=142.1
Q ss_pred CCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc-----------eEE-----EEcCCCCCEEEEEEEcCCcEEE----EE
Q 001109 42 PSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI-----------EGL-----LVSPKQLAFKHLEFLQNQGFLV----SI 101 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~-----------~~~-----~~~~~~~~V~~l~Fs~dg~~Lv----S~ 101 (1155)
...++.||+++++.+||+|+.|| |+||+.... ... ...++...|.+++|+|+|.+|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34689999999999999999998 888753211 111 1223456799999999999999 78
Q ss_pred ecCCeEEEEECCCC--------ce---eeeecCC-CceeEEEEecC-CCEEEEEeCCCcEEEEEecCCCceeeccceecc
Q 001109 102 SSGNEIQLWDLEAR--------RI---TSTLPWE-SNITAFSVIFG-TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVP 168 (1155)
Q Consensus 102 s~Dg~I~vWDl~t~--------~~---~~~l~~~-~~Vtsva~spd-~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~ 168 (1155)
+.|++|+|||+.++ +. +..+..| ..|++++|+|+ +.+|++|+.||+|++|++... ... ...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~--~~~---~~~- 188 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET--VKV---CAT- 188 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS--EEE---EEE-
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC--cce---eec-
Confidence 88999999999765 22 2334444 78999999998 889999999999999976553 111 000
Q ss_pred CCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEE
Q 001109 169 KDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLV 248 (1155)
Q Consensus 169 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg 248 (1155)
..+...+.+ ++|+|+ + ++|++|
T Consensus 189 ---------------------------------------------~~~~~~v~~-----v~wspd--g------~~lasg 210 (434)
T 2oit_A 189 ---------------------------------------------LPSTVAVTS-----VCWSPK--G------KQLAVG 210 (434)
T ss_dssp ---------------------------------------------ECGGGCEEE-----EEECTT--S------SCEEEE
T ss_pred ---------------------------------------------cCCCCceeE-----EEEcCC--C------CEEEEE
Confidence 001233444 999998 4 679999
Q ss_pred EcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEE-EEcCCc-
Q 001109 249 YANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAV-GYVDGD- 326 (1155)
Q Consensus 249 ~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~las-g~~DG~- 326 (1155)
+.||.|++||++ ++....... +... . ..|...|.+++|+ +++.++++ +..||.
T Consensus 211 s~dg~v~iwd~~-~~~~~~~~~---~~~~--------~------------~~~~~~v~~v~w~-~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 211 KQNGTVVQYLPT-LQEKKVIPC---PPFY--------E------------SDHPVRVLDVLWI-GTYVFAIVYAAADGTL 265 (434)
T ss_dssp ETTSCEEEECTT-CCEEEEECC---CTTC--------C------------TTSCEEEEEEEEE-ETTEEEEEEEETTCCS
T ss_pred cCCCcEEEEccC-CcccccccC---Cccc--------C------------CCCceeEEEEEEe-cCceEEEEEccCCCcc
Confidence 999999999998 544432110 0000 0 0124479999999 78877654 334433
Q ss_pred -----EEEEEcCCC
Q 001109 327 -----ILLWNLRAA 335 (1155)
Q Consensus 327 -----I~lWd~~s~ 335 (1155)
+++|++...
T Consensus 266 ~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 266 ETSPDVVMALLPKK 279 (434)
T ss_dssp SSCCEEEEEECCCT
T ss_pred CCCCceEEEEeccC
Confidence 899999764
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.59 E-value=6.9e-13 Score=168.68 Aligned_cols=110 Identities=10% Similarity=0.024 Sum_probs=77.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCC-----CEEEEEEEcCCcEEEEEecC---------
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQL-----AFKHLEFLQNQGFLVSISSG--------- 104 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~-----~V~~l~Fs~dg~~LvS~s~D--------- 104 (1155)
++......++|+|||++|+++ ||+|++|+..+.+..... .+.. ....++|||||++|+.++.+
T Consensus 14 ~~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 14 TYRLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CSCCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred cccccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 444556789999999999997 999999998776544332 2221 22448999999999998876
Q ss_pred CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEE
Q 001109 105 NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLK 152 (1155)
Q Consensus 105 g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~ 152 (1155)
+.+.+||++++++.......+.+...+|+|||+.||.+. ++.|++|+
T Consensus 92 ~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~ 138 (740)
T 4a5s_A 92 ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKI 138 (740)
T ss_dssp EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEES
T ss_pred eEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEE
Confidence 456688888887654222346677778888887777663 46666653
No 162
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.58 E-value=2.1e-13 Score=156.06 Aligned_cols=213 Identities=13% Similarity=0.102 Sum_probs=135.8
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEc--CCeEEEEccCCceE--EEE-cCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEEC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQ--DGRIKVIGGDNIEG--LLV-SPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDL 112 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~--DG~I~vw~~~~~~~--~~~-~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl 112 (1155)
.++...+..++|+|+|++++++.. ++.|++|+..+.+. +.. ..+...+..++|+|+|++|++++ .+++|.+||+
T Consensus 36 ~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 345567888999999995544443 68999999865542 222 12345678999999999999888 6799999999
Q ss_pred C-CCc--eeeeecCC----------CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeE
Q 001109 113 E-ARR--ITSTLPWE----------SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLL 179 (1155)
Q Consensus 113 ~-t~~--~~~~l~~~----------~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 179 (1155)
. ++. .+..+... ..+.+++|+|+|++++++..++.|++|+++. .+++.... .
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~-~g~~~~~~-~------------- 180 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD-AGQLSEQS-V------------- 180 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT-TSCEEEEE-E-------------
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC-CCcEEEee-e-------------
Confidence 6 333 33333222 2488999999999555556678899998773 22222000 0
Q ss_pred eeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEE-EEcCCeEEEEE
Q 001109 180 LEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLL-VYANGLIILWD 258 (1155)
Q Consensus 180 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~lls-g~~dG~I~lWd 258 (1155)
+..+. ...... ++|+|++ +++++ ...++.|.+|+
T Consensus 181 -----------------------~~~~~---------g~~p~~-----~~~spdg--------~~l~v~~~~~~~v~v~~ 215 (347)
T 3hfq_A 181 -----------------------LTMEA---------GFGPRH-----LVFSPDG--------QYAFLAGELSSQIASLK 215 (347)
T ss_dssp -----------------------EECCT---------TCCEEE-----EEECTTS--------SEEEEEETTTTEEEEEE
T ss_pred -----------------------EEcCC---------CCCCce-----EEECCCC--------CEEEEEeCCCCEEEEEE
Confidence 00000 111223 8999984 44555 45678999999
Q ss_pred ccC--CeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEE-EEEcCCcEEEEEcCC
Q 001109 259 VSE--DKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLA-VGYVDGDILLWNLRA 334 (1155)
Q Consensus 259 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~la-sg~~DG~I~lWd~~s 334 (1155)
+.. ++....... . ..+... .....+..++|+ |||++|+ +...++.|.+|++..
T Consensus 216 ~~~~~g~~~~~~~~-----~----~~~~~~-------------~~~~~~~~i~~s-pdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 216 YDTQTGAFTQLGIV-----K----TIPADY-------------TAHNGAAAIRLS-HDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EETTTTEEEEEEEE-----E----SSCTTC-------------CSCCEEEEEEEC-TTSCEEEEEEETTTEEEEEEECG
T ss_pred ecCCCCceEEeeee-----e----ecCCCC-------------CCCCcceeEEEC-CCCCEEEEEeCCCCEEEEEEECC
Confidence 874 554322110 0 000000 012457889999 9999874 556689999999873
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.58 E-value=7.1e-14 Score=159.03 Aligned_cols=236 Identities=10% Similarity=0.029 Sum_probs=154.1
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCC--CEEEEEEEcCCcEEEE-EecCCeEEEEECCCCceeeeecC
Q 001109 47 ILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQL--AFKHLEFLQNQGFLVS-ISSGNEIQLWDLEARRITSTLPW 123 (1155)
Q Consensus 47 ~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~--~V~~l~Fs~dg~~LvS-~s~Dg~I~vWDl~t~~~~~~l~~ 123 (1155)
.++++++++++++++.+++|++||..+.+.+....... .+..++|+|++++++. ...++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 35789999999999999999999998877665443323 5789999999986654 45689999999999988877764
Q ss_pred CC-------ceeEEEEecCCCEEEEEeCC------------CcEEEEEecCCC-ceeeccceeccCCceeeeceeEeeEe
Q 001109 124 ES-------NITAFSVIFGTSYMYIGDEY------------GMVYVLKYDTEE-GKLIHSPYYVPKDVIEVFNHLLLEFC 183 (1155)
Q Consensus 124 ~~-------~Vtsva~spd~~~l~~G~~d------------G~V~vw~~d~~~-~~l~~~~~~i~~~~~~~~~~~~l~~~ 183 (1155)
.. .+.+++|+|+|++|++++.+ +.|++|++.... .+.. ..+..+. .+.+++|+
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~------~~~~~~~s 156 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV-RTFPMPR------QVYLMRAA 156 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-EEEECCS------SCCCEEEC
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee-eeccCCC------cccceeEC
Confidence 32 27899999999999998865 888888765421 0000 0011111 13367788
Q ss_pred cccccccccccccccceeeecCCCCCCCccccccc-------------------------cc------------------
Q 001109 184 PNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIR-------------------------SK------------------ 220 (1155)
Q Consensus 184 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~v------------------ 220 (1155)
||+. .+.. ...+..+.+.........+... ..
T Consensus 157 ~dg~-l~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 157 DDGS-LYVA----GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp TTSC-EEEE----SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred CCCc-EEEc----cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 8874 2210 1112222221111000000000 00
Q ss_pred ---------------------ccceeeEEEEee-cccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccc
Q 001109 221 ---------------------LRFFVEIRLLQF-QKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTE 278 (1155)
Q Consensus 221 ---------------------~~~~v~~v~~~p-~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~ 278 (1155)
....+..++++| ++ ++++++ ++.|.+||+.+++.+.....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg--------~~l~~~--~~~v~~~d~~~~~~~~~~~~-------- 293 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP--------NQIYGV--LNRLAKYDLKQRKLIKAANL-------- 293 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT--------TEEEEE--ESEEEEEETTTTEEEEEEEC--------
T ss_pred ceeEEEEeccCCcEEecccccCCCcceeeEecCCCC--------CEEEEE--cCeEEEEECccCeEEEEEcC--------
Confidence 000223466677 63 567777 89999999999987754211
Q ss_pred cccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 279 IVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
...+.+++|+ |||++|++++.++.|++||+.+.+
T Consensus 294 -----------------------~~~~~~~~~s-~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 294 -----------------------DHTYYCVAFD-KKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp -----------------------SSCCCEEEEC-SSSSCEEEESBSSEEEEEETTTTE
T ss_pred -----------------------CCCccceEEC-CCCCEEEEecCCCeEEEEeccccc
Confidence 2346789999 999999999999999999998764
No 164
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.57 E-value=2.6e-15 Score=136.61 Aligned_cols=66 Identities=30% Similarity=0.561 Sum_probs=62.4
Q ss_pred CCCCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001109 1080 KPKSRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154 (1155)
Q Consensus 1080 ~~~~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~ 1154 (1155)
.+..+++.+|+.+ |+||++||.+||++||||||||+.|++||++|+++|+.|++.|++|+|+ |||+
T Consensus 26 ~~~~d~l~~vq~e-----ldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rk----mwwk 91 (96)
T 1sfc_A 26 LTSNRRLQQTQAQ-----VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK----YWWK 91 (96)
T ss_dssp CCCSHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred CccccHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3566788888888 8999999999999999999999999999999999999999999999999 9997
No 165
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.56 E-value=3.4e-15 Score=134.96 Aligned_cols=63 Identities=32% Similarity=0.585 Sum_probs=59.8
Q ss_pred CCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001109 1083 SRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154 (1155)
Q Consensus 1083 ~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~ 1154 (1155)
.+++++++++ |+||+++|.+||+|++||||||+.|++||++|+++|+.|+++|++|+|+ ||||
T Consensus 4 ~d~l~~vq~e-----v~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rk----mwwk 66 (91)
T 3hd7_A 4 MRRLQQTQAQ-----VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK----YWWK 66 (91)
T ss_dssp THHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred hHHHHHHHHH-----HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3567888888 8999999999999999999999999999999999999999999999999 9997
No 166
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.55 E-value=1.6e-15 Score=133.84 Aligned_cols=65 Identities=31% Similarity=0.596 Sum_probs=60.5
Q ss_pred CCCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001109 1081 PKSRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154 (1155)
Q Consensus 1081 ~~~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~ 1154 (1155)
+..+++.+|+.+ |+||+.||.+||++|+||||||+.|++||++|+++|+.|++.|++|+|+ |||+
T Consensus 12 ~~~d~l~~vq~e-----l~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk----~wwk 76 (80)
T 1l4a_A 12 QQSKRLQQTQAQ-----VEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRK----FWWK 76 (80)
T ss_dssp CCSCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHH----CC--
T ss_pred ccccHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 456889999999 8999999999999999999999999999999999999999999999999 9997
No 167
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.55 E-value=5.9e-15 Score=124.21 Aligned_cols=63 Identities=30% Similarity=0.507 Sum_probs=58.9
Q ss_pred CCCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 001109 1081 PKSRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKW 1152 (1155)
Q Consensus 1081 ~~~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~w 1152 (1155)
|..+++.+++.+ |+||+.||.+||+++++|||||+.|++||++|+++|+.|++.|++|+|+ ||
T Consensus 1 ~~~d~l~~v~~~-----l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~----mW 63 (63)
T 1n7s_A 1 GSNRRLQQTQAQ-----VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK----YW 63 (63)
T ss_dssp CCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HC
T ss_pred CcccHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hC
Confidence 445667788888 8899999999999999999999999999999999999999999999999 88
No 168
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.52 E-value=1.8e-14 Score=120.18 Aligned_cols=59 Identities=29% Similarity=0.509 Sum_probs=56.3
Q ss_pred CHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 001109 1085 TVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKW 1152 (1155)
Q Consensus 1085 ~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~w 1152 (1155)
++.+|+++ |+||+.||.+||+++++|||||+.|++||++|+++|..|++.|++|+|+ ||
T Consensus 3 ~l~~vq~~-----l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~----mW 61 (61)
T 3b5n_A 3 RTAELQAE-----IDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKA----MW 61 (61)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HC
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hC
Confidence 46778888 8999999999999999999999999999999999999999999999999 88
No 169
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.52 E-value=4.7e-12 Score=145.78 Aligned_cols=209 Identities=9% Similarity=0.050 Sum_probs=136.1
Q ss_pred CCCCceEEEEcCCCCEEEEEEcC----CeEEEEccCC--ce--EEEEcC-CCCCEEEEEEEcCCcEEEEEe-cCCeEEEE
Q 001109 41 IPSTASILAFDHVQSLLAIGTQD----GRIKVIGGDN--IE--GLLVSP-KQLAFKHLEFLQNQGFLVSIS-SGNEIQLW 110 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~D----G~I~vw~~~~--~~--~~~~~~-~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vW 110 (1155)
+...++.++|+|+|++|++++.+ |.|.+|+.+. .+ .+.... +......++| ++++|++++ .+++|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56778889999999999999886 8999997643 33 222222 3446777888 778888776 57899999
Q ss_pred ECCCCceeeee------cC---------CCceeEEEEecCCCEEEEEeC-CCcEEEEEecCCCc----e-eeccceeccC
Q 001109 111 DLEARRITSTL------PW---------ESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDTEEG----K-LIHSPYYVPK 169 (1155)
Q Consensus 111 Dl~t~~~~~~l------~~---------~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~~~~----~-l~~~~~~i~~ 169 (1155)
++.....+..+ .. ...+.+++|+|+|++|++++. ++.|++|+++...+ + +.... ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~-~~~- 203 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG-TPE- 203 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE-EEE-
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc-ccc-
Confidence 99754332211 11 123588999999998877654 78899998887543 2 21000 000
Q ss_pred CceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEE
Q 001109 170 DVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVY 249 (1155)
Q Consensus 170 ~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~ 249 (1155)
....+ ......+ ++|+|++ ++++++.
T Consensus 204 --------------------------------~~~~~---------~~~~~~~-----~~~spdg--------~~l~v~~ 229 (361)
T 3scy_A 204 --------------------------------AFKVA---------PGSGPRH-----LIFNSDG--------KFAYLIN 229 (361)
T ss_dssp --------------------------------EEECC---------TTCCEEE-----EEECTTS--------SEEEEEE
T ss_pred --------------------------------ceecC---------CCCCCeE-----EEEcCCC--------CEEEEEc
Confidence 00000 0111223 8999984 5677777
Q ss_pred -cCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcC--Cc
Q 001109 250 -ANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVD--GD 326 (1155)
Q Consensus 250 -~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~D--G~ 326 (1155)
.++.|.+||+.++++...... . ..+ .+...+.+++|+ |||++|+++..+ +.
T Consensus 230 ~~~~~v~v~~~~~g~~~~~~~~-----~----~~~----------------~~~~~~~~i~~s-pdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 230 EIGGTVIAFRYADGMLDEIQTV-----A----ADT----------------VNAQGSGDIHLS-PDGKYLYASNRLKADG 283 (361)
T ss_dssp TTTCEEEEEEEETTEEEEEEEE-----E----SCS----------------SCCCCEEEEEEC-TTSSEEEEEECSSSCE
T ss_pred CCCCeEEEEEecCCceEEeEEE-----e----cCC----------------CCCCCcccEEEC-CCCCEEEEECCCCCCE
Confidence 589999999998765432110 0 000 012345799999 999999776654 89
Q ss_pred EEEEEcC
Q 001109 327 ILLWNLR 333 (1155)
Q Consensus 327 I~lWd~~ 333 (1155)
|.+|++.
T Consensus 284 i~v~~~~ 290 (361)
T 3scy_A 284 VAIFKVD 290 (361)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9999996
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.49 E-value=9.5e-13 Score=152.66 Aligned_cols=98 Identities=6% Similarity=-0.095 Sum_probs=69.4
Q ss_pred CceEEEEcCCCCEEEEEEcC---CeEEEEccCCceEEEEcCCCCCEE-EEEEEcCCcEEEEEecCCeEEEEECCCCceee
Q 001109 44 TASILAFDHVQSLLAIGTQD---GRIKVIGGDNIEGLLVSPKQLAFK-HLEFLQNQGFLVSISSGNEIQLWDLEARRITS 119 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~D---G~I~vw~~~~~~~~~~~~~~~~V~-~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~ 119 (1155)
.+..++|||||++||..... ..|.+|+..+.+......+...+. .+.|+|||++|+.++.++.|.+||+.+++...
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 36778999999999887654 378888988776554333333322 37899999999999999999999999887655
Q ss_pred eecCCCceeEEEEecCCCEEEEEeCCC
Q 001109 120 TLPWESNITAFSVIFGTSYMYIGDEYG 146 (1155)
Q Consensus 120 ~l~~~~~Vtsva~spd~~~l~~G~~dG 146 (1155)
....+.. ++|++++|+....++
T Consensus 117 ~~~~~~~-----~~~~g~~l~~~~~~~ 138 (396)
T 3c5m_A 117 IYTVDEE-----WKGYGTWVANSDCTK 138 (396)
T ss_dssp EEECCTT-----EEEEEEEEECTTSSE
T ss_pred EEecccc-----cCCCCCEEEeccCCc
Confidence 4443332 566666666544443
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.49 E-value=3.1e-11 Score=139.81 Aligned_cols=86 Identities=9% Similarity=0.081 Sum_probs=66.1
Q ss_pred EEEEecCCCeEEEEeC-----------CCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEE
Q 001109 597 ALEFCSVTLNLAIGSS-----------SGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNL 665 (1155)
Q Consensus 597 ~lafspdg~~Lasgs~-----------dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtsl 665 (1155)
.++|+||++.+.++.. .+.|.+||+.+.+. +..+..+. +.+|
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-------------------------v~~i~~~~--p~~i 310 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-------------------------VARIPGRD--ALSM 310 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-------------------------EEEEECTT--CCEE
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-------------------------EEEEecCC--eeEE
Confidence 3789999888877654 34899999877432 23445555 8999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCc--cEEEEeccCCCCCCCeeEEEEe
Q 001109 666 KFSNFGARLAVGFECSQVAMLDISTF--SVLFITDSLSNSNSPVLYLAVK 713 (1155)
Q Consensus 666 afSpdg~~LAsGs~Dg~V~lWDi~~~--~~l~~~~~~~~h~~~V~slafs 713 (1155)
+|+|||++|++++. ++|.|||..++ +++.+.. .+...-..++|+
T Consensus 311 a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~---~~G~~P~~~~~~ 356 (361)
T 2oiz_A 311 TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE---GAAEASLQVQFH 356 (361)
T ss_dssp EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET---TSCSSEEEEEEC
T ss_pred EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec---cCCCCcEEEEec
Confidence 99999999999887 99999999999 8876642 245566778888
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.48 E-value=7.8e-12 Score=144.93 Aligned_cols=68 Identities=12% Similarity=-0.011 Sum_probs=54.5
Q ss_pred EEEEcCCcEEEEEec-CC--eEEEEECCCCceeeeecCCC-ceeEEEEecCCCEEEEEeCCCcEEEEEecCC
Q 001109 89 LEFLQNQGFLVSISS-GN--EIQLWDLEARRITSTLPWES-NITAFSVIFGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 89 l~Fs~dg~~LvS~s~-Dg--~I~vWDl~t~~~~~~l~~~~-~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
.+|+|||++|+.++. ++ .|.+||+.+++.......+. .+.+++|+||+++|+.+..++.|++|+.+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 789999999998887 66 48888999988776655553 3446789999999999998888888766553
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.45 E-value=1.3e-11 Score=142.93 Aligned_cols=94 Identities=11% Similarity=0.006 Sum_probs=71.2
Q ss_pred EEEcCCCCEEEEEEc-CC--eEEEEccCCceEEEEcCC-CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecC
Q 001109 48 LAFDHVQSLLAIGTQ-DG--RIKVIGGDNIEGLLVSPK-QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPW 123 (1155)
Q Consensus 48 lafsp~g~lLAsgs~-DG--~I~vw~~~~~~~~~~~~~-~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~ 123 (1155)
.+|||||++||.++. +| .|.+|+..+.+......+ ...+..+.|+|||++|+.++.++.|.+||+.+++....+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 789999999999988 67 488889887776544433 33344678999999999999999999999999987665555
Q ss_pred CC-ceeE--EEEecCCCEEEE
Q 001109 124 ES-NITA--FSVIFGTSYMYI 141 (1155)
Q Consensus 124 ~~-~Vts--va~spd~~~l~~ 141 (1155)
+. .+.. ..++|++.+++.
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~ 141 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVG 141 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEE
T ss_pred hhhcccccceeECCCCCeecc
Confidence 43 3322 345899998874
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.44 E-value=8.7e-12 Score=144.43 Aligned_cols=101 Identities=9% Similarity=0.173 Sum_probs=76.0
Q ss_pred CCCCEEEEEE------cCCeEEEEccCCceEEEEcCC-CCCEEEEEEEcCCcEEEEEec----------CCeEEEEECCC
Q 001109 52 HVQSLLAIGT------QDGRIKVIGGDNIEGLLVSPK-QLAFKHLEFLQNQGFLVSISS----------GNEIQLWDLEA 114 (1155)
Q Consensus 52 p~g~lLAsgs------~DG~I~vw~~~~~~~~~~~~~-~~~V~~l~Fs~dg~~LvS~s~----------Dg~I~vWDl~t 114 (1155)
|+++++.+.. .|++|.+||..+.+.+...+. ..+ .++|+|||++|++++. +++|.+||+.+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3556655543 368999999877766554432 233 8999999999998863 67899999999
Q ss_pred CceeeeecCC-------CceeEEEEecCCCEEEEEeC--CCcEEEEEec
Q 001109 115 RRITSTLPWE-------SNITAFSVIFGTSYMYIGDE--YGMVYVLKYD 154 (1155)
Q Consensus 115 ~~~~~~l~~~-------~~Vtsva~spd~~~l~~G~~--dG~V~vw~~d 154 (1155)
.+.+.++... .....++|+|||++||++.. +++|.+|+.+
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~ 139 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA 139 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC
Confidence 9988877532 34678999999999999874 5778887444
No 175
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.42 E-value=2.5e-13 Score=114.75 Aligned_cols=60 Identities=25% Similarity=0.512 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001109 1081 PKSRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAK 1145 (1155)
Q Consensus 1081 ~~~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~ 1145 (1155)
|..+++.+|+.+ |+||+.||.+||++|++|||||+.|++||++|+++|..|++.|++|+|
T Consensus 6 ~~~d~l~~vq~~-----l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 6 AGNDRVRNLQSE-----VEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ----CHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456889999999 899999999999999999999999999999999999999999999986
No 176
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.39 E-value=7.7e-15 Score=138.86 Aligned_cols=65 Identities=31% Similarity=0.580 Sum_probs=61.4
Q ss_pred CCCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001109 1081 PKSRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154 (1155)
Q Consensus 1081 ~~~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~ 1154 (1155)
+..+++++++++ |+||++||.+||+|++||||||+.|++||++|+++|+.|++.|++|+|+ ||||
T Consensus 30 ~~~d~l~~vq~e-----vdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rk----mwwk 94 (119)
T 2kog_A 30 TSNRRLQQTQAQ-----VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK----YWWK 94 (119)
T ss_dssp SSCSHHHHSSHH-----HHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHH----HSCH
T ss_pred ccchHHHHHHHH-----HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 456778888888 8899999999999999999999999999999999999999999999999 9997
No 177
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.38 E-value=9.3e-12 Score=144.07 Aligned_cols=217 Identities=10% Similarity=0.001 Sum_probs=139.3
Q ss_pred CceEEEEcCCCCE--EEEEE-------------cCCeEEEEccC-CceEE--EE---cCCCCCEEEEEEEcCCcEEEEEe
Q 001109 44 TASILAFDHVQSL--LAIGT-------------QDGRIKVIGGD-NIEGL--LV---SPKQLAFKHLEFLQNQGFLVSIS 102 (1155)
Q Consensus 44 ~vs~lafsp~g~l--LAsgs-------------~DG~I~vw~~~-~~~~~--~~---~~~~~~V~~l~Fs~dg~~LvS~s 102 (1155)
.+.+++|+|+|++ ++++. .+|++.+|+.. ..+.. .. ..+...+..++|+|||++|++++
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 4667899999994 55553 68999999875 23322 11 12445789999999999888776
Q ss_pred c-CCeEEEEECC-CCcee--eeec--C-CCceeEEEEecCCCEEEEEeC-CCcEEEEEecCCCceeeccceeccCCceee
Q 001109 103 S-GNEIQLWDLE-ARRIT--STLP--W-ESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDTEEGKLIHSPYYVPKDVIEV 174 (1155)
Q Consensus 103 ~-Dg~I~vWDl~-t~~~~--~~l~--~-~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 174 (1155)
. ++.|.+||++ ++++. ..+. . ...+..++|+|+|++|+++.+ +++|.+|+++...+++......+..
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~----- 238 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL----- 238 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES-----
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc-----
Confidence 4 6899999998 77653 3343 2 356899999999999998875 6889999998755543200000000
Q ss_pred eceeEeeEecccccccccccccccceeeecCCCCCCCccccccccc-ccceeeEEE-EeecccccccccccEEEEEEcC-
Q 001109 175 FNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSK-LRFFVEIRL-LQFQKHVNSTLGFSQLLLVYAN- 251 (1155)
Q Consensus 175 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~~v~-~~p~~~~~~~~~~~~llsg~~d- 251 (1155)
++....+ +..++ ....+..++ |+|++ ++|+++..+
T Consensus 239 ------------------------------~~~~~~g----~~~~~~~~~~~~~i~~~spdG--------~~l~v~~~~~ 276 (365)
T 1jof_A 239 ------------------------------IPPGIPD----RDPETGKGLYRADVCALTFSG--------KYMFASSRAN 276 (365)
T ss_dssp ------------------------------SCTTCCC----BCTTTSSBSEEEEEEEECTTS--------SEEEEEEEES
T ss_pred ------------------------------CCCCcCC----cccccccccccccEEEECCCC--------CEEEEECCCC
Confidence 0000000 00000 000133389 99984 567766653
Q ss_pred C-----eEEEEEcc-CCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEec---CCCeEEEEE
Q 001109 252 G-----LIILWDVS-EDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASN---DGSVLAVGY 322 (1155)
Q Consensus 252 G-----~I~lWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~p---dG~~lasg~ 322 (1155)
+ .|.+|++. ++++...... ... +...+..++|+ | ||++|+++.
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~----~~~-----------------------~~~~~~~~a~s-p~~~dg~~l~v~~ 328 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFL----SPT-----------------------PTSGGHSNAVS-PCPWSDEWMAITD 328 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEE----EEC-----------------------SSCCTTCCCEE-ECTTCTTEEEEEC
T ss_pred CCCCCCeEEEEEECCCCCEEEeeee----eec-----------------------CCCCcccceec-CCCcCCCEEEEEE
Confidence 3 89999996 6665432100 000 12345678999 8 899999998
Q ss_pred cC-CcEEEEEcCCC
Q 001109 323 VD-GDILLWNLRAA 335 (1155)
Q Consensus 323 ~D-G~I~lWd~~s~ 335 (1155)
.+ +.|.+|++...
T Consensus 329 ~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQEGWLEIYRWKDE 342 (365)
T ss_dssp SSSCEEEEEEEETT
T ss_pred cCCCeEEEEEEchh
Confidence 75 89999998754
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.38 E-value=1.4e-09 Score=133.04 Aligned_cols=204 Identities=12% Similarity=0.099 Sum_probs=138.9
Q ss_pred EcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECC--CCceeeeecCCCce
Q 001109 50 FDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLE--ARRITSTLPWESNI 127 (1155)
Q Consensus 50 fsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~--t~~~~~~l~~~~~V 127 (1155)
.+|.+.++++...+++|.|||..+.+.+...+....+..+.|+|||++|++++.|+.|.+||+. +++.+.+++.....
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P 242 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA 242 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC
Confidence 5565667777778899999999988777665555567899999999999999999999999996 88888888776677
Q ss_pred eEEEEe----cCCCEEEEEeCC-CcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceee
Q 001109 128 TAFSVI----FGTSYMYIGDEY-GMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLF 202 (1155)
Q Consensus 128 tsva~s----pd~~~l~~G~~d-G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 202 (1155)
..++|+ |||++++++... ++|.|+ |..+.+... .++....
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi--D~~t~~~~~---~i~~~~~------------------------------ 287 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIM--DGETLEPKK---IQSTRGM------------------------------ 287 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEE--ETTTCCEEE---EEECCEE------------------------------
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEE--ECCCCcEEE---EEecccc------------------------------
Confidence 899999 799999988765 777776 554433321 1111000
Q ss_pred ecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccC
Q 001109 203 YCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDD 282 (1155)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 282 (1155)
+ ..+........ +.++..+++.. ..++...++|.|.++|....+.+.+... .
T Consensus 288 ---~--~~~~~~~p~~r-----va~i~~s~~~~-------~~vv~~~~~g~v~~vd~~~~~~~~v~~i-----~------ 339 (567)
T 1qks_A 288 ---T--YDEQEYHPEPR-----VAAILASHYRP-------EFIVNVKETGKILLVDYTDLNNLKTTEI-----S------ 339 (567)
T ss_dssp ---C--TTTCCEESCCC-----EEEEEECSSSS-------EEEEEETTTTEEEEEETTCSSEEEEEEE-----E------
T ss_pred ---c--cccccccCCCc-----eEEEEEcCCCC-------EEEEEecCCCeEEEEecCCCccceeeee-----e------
Confidence 0 00000000111 22377777643 4566667779999999877654433110 0
Q ss_pred CCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE-cCCcEEEEEcCCC
Q 001109 283 PSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY-VDGDILLWNLRAA 335 (1155)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~-~DG~I~lWd~~s~ 335 (1155)
.......+.|+ |||++|+++. .++.|.+||+.++
T Consensus 340 ------------------~~~~~~d~~~~-pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 340 ------------------AERFLHDGGLD-GSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp ------------------CCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETTTT
T ss_pred ------------------ccccccCceEC-CCCCEEEEEeCCCCeEEEEECCCC
Confidence 12335578898 9999987766 5778999888754
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.33 E-value=1.6e-10 Score=144.35 Aligned_cols=106 Identities=8% Similarity=-0.020 Sum_probs=71.9
Q ss_pred cCCCCCceEEEEcCCCCEEEEE--EcCCeEEEEcc-CCceEEEEcCCCCCEE---------EEEEE--cCCcE-EEEEec
Q 001109 39 YGIPSTASILAFDHVQSLLAIG--TQDGRIKVIGG-DNIEGLLVSPKQLAFK---------HLEFL--QNQGF-LVSISS 103 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsg--s~DG~I~vw~~-~~~~~~~~~~~~~~V~---------~l~Fs--~dg~~-LvS~s~ 103 (1155)
.+|...+..++|++++-+++.+ ..+++..||.. .+.+......+...+. ...|+ |||++ |+.++.
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 4788899999999987777777 55789999973 3333332233334444 55666 99988 665553
Q ss_pred -CCeEEEEECC--C-CceeeeecC------CCceeEEEEecCCCEEEEEeCC
Q 001109 104 -GNEIQLWDLE--A-RRITSTLPW------ESNITAFSVIFGTSYMYIGDEY 145 (1155)
Q Consensus 104 -Dg~I~vWDl~--t-~~~~~~l~~------~~~Vtsva~spd~~~l~~G~~d 145 (1155)
+..|.+||+. + +. ...+.. ...+.+++|+|||++|+.++.+
T Consensus 100 ~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~ 150 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEE 150 (662)
T ss_dssp TTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEec
Confidence 4566666765 2 43 333433 3568899999999999988765
No 180
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.32 E-value=3.5e-10 Score=143.69 Aligned_cols=101 Identities=7% Similarity=-0.018 Sum_probs=62.2
Q ss_pred CCCCCeEEEEEecCCCeEEEEeC----CCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeE--
Q 001109 590 TESESVSALEFCSVTLNLAIGSS----SGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPIC-- 663 (1155)
Q Consensus 590 gh~~~V~~lafspdg~~Lasgs~----dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vt-- 663 (1155)
+|...+..++|+|||+.++.... +..|++||+.++.....+..+ ....-.+|.+.|.
T Consensus 257 ~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~-----------------~~l~~~~~~~~v~~~ 319 (740)
T 4a5s_A 257 IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA-----------------RQHIEMSTTGWVGRF 319 (740)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG-----------------GCEEEECSSSCSSSS
T ss_pred CCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE-----------------EEeeeccCCceEccC
Confidence 36668999999999997766543 247999999876410000000 0000134555444
Q ss_pred ---EEEEcCCCCEEE-EEeC-C--CcEEEEecCCccEEEEeccCCCCCCCeeEEE
Q 001109 664 ---NLKFSNFGARLA-VGFE-C--SQVAMLDISTFSVLFITDSLSNSNSPVLYLA 711 (1155)
Q Consensus 664 ---slafSpdg~~LA-sGs~-D--g~V~lWDi~~~~~l~~~~~~~~h~~~V~sla 711 (1155)
.++|||||+.|+ ..+. + ..|.+||+.++.... + ......|..+.
T Consensus 320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~---l-T~g~~~v~~~~ 370 (740)
T 4a5s_A 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF---I-TKGTWEVIGIE 370 (740)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE---S-CCSSSCEEEEE
T ss_pred cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe---c-ccCCEEEEEEE
Confidence 688999999887 6654 3 468889998776542 2 22355666654
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.31 E-value=6.2e-09 Score=127.38 Aligned_cols=172 Identities=13% Similarity=0.062 Sum_probs=104.5
Q ss_pred ccCCcCcEEEEE-ECCCcEEEEeCCCCCeeeeeeeCCCc-CccccCCCCCCeEEEEEecCCCeE-EEEe-CCCeEEEEEe
Q 001109 546 EDYLVERLYIAG-YRDGSTRIWDATYPTLSLIHVFGSEL-PGIRTATESESVSALEFCSVTLNL-AIGS-SSGLVWLYNL 621 (1155)
Q Consensus 546 ~~s~~~~lLaTg-s~DgtVrlWD~~~~~l~~l~~l~~~~-~~i~~~gh~~~V~~lafspdg~~L-asgs-~dG~V~lwd~ 621 (1155)
.|+|++++++++ ..+++|.+||+.++.+.. .+. + .. ..|...-..+ |+|++..+ +++. .++.|.+++.
T Consensus 348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~--~i~--vgg~---~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 348 GLDGSHRYFITAANARNKLVVIDTKEGKLVA--IED--TGGQ---TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEE--EEE--CSSS---SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred eECCCCCEEEEEeCCCCeEEEEECCCCcEEE--EEe--ccCc---CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecC
Confidence 456777766544 467899999999886432 221 1 00 1232212222 68985554 4544 4689999998
Q ss_pred ccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeC-------CCcEEEEecCCc---
Q 001109 622 IKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFE-------CSQVAMLDISTF--- 691 (1155)
Q Consensus 622 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~-------Dg~V~lWDi~~~--- 691 (1155)
........ .+..+.++......-.-|+++|++++|-+... .++|.|+|+.+.
T Consensus 420 ~~~~~~~~------------------~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 481 (567)
T 1qks_A 420 DPEGHPDN------------------AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD 481 (567)
T ss_dssp CTTTCTTT------------------BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS
T ss_pred CCCCCccc------------------cCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccc
Confidence 86332100 01111233332222234778999999888663 458999999876
Q ss_pred --cEE-EEecc-----CCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEe-----CCceEEEEECCCC
Q 001109 692 --SVL-FITDS-----LSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMT-----KDAHIVVCDSTTG 758 (1155)
Q Consensus 692 --~~l-~~~~~-----~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s-----~Dg~I~vwd~~tG 758 (1155)
... ....+ +..-...+..+.|+ |||+.|.++. .++.|.|+|..|+
T Consensus 482 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 482 GSDPEFKTLPIAEWAGITEGQPRVVQGEFN----------------------KDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp SSCCCEEEECHHHHHTCCSSCCEEEEEEEC----------------------TTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred ccCCCcEEeccccccccCCCCcceEeeeEC----------------------CCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 211 11111 11123468889998 8888887763 3899999999999
Q ss_pred ceeeeee
Q 001109 759 HILFSRS 765 (1155)
Q Consensus 759 ~~l~~~~ 765 (1155)
+++...+
T Consensus 540 ~~~~~i~ 546 (567)
T 1qks_A 540 ELKHVIK 546 (567)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 9988774
No 182
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.29 E-value=1.6e-10 Score=144.40 Aligned_cols=121 Identities=17% Similarity=-0.038 Sum_probs=70.3
Q ss_pred ccCCcCcEEEEEECCC--cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEecc
Q 001109 546 EDYLVERLYIAGYRDG--STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIK 623 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~Dg--tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~ 623 (1155)
.|+|+|++++++..|+ .|.+||+.++....+......+.. ..-...+.+++|+|+++++++++. |.++||.+..
T Consensus 248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~---p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~ 323 (662)
T 3azo_A 248 EWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG---PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP 323 (662)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC---CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET
T ss_pred EECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccC---ccccccCceEeEeCCCEEEEEEEc-CccEEEEEEC
Confidence 5667777778887788 455556555553322111100000 000001567999999999999999 9999997653
Q ss_pred CccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEE-EEcCCCCEEEEEeCCCc--EEEEecCCccEE
Q 001109 624 SSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNL-KFSNFGARLAVGFECSQ--VAMLDISTFSVL 694 (1155)
Q Consensus 624 ~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~Vtsl-afSpdg~~LAsGs~Dg~--V~lWDi~~~~~l 694 (1155)
.... ...+..|.+.+.++ +++++.-.+++++.+.. |.+||+.++...
T Consensus 324 ~~~~------------------------~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 324 ESGE------------------------LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp TTTE------------------------EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred CCCc------------------------EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 2110 13345666777777 55444444556666654 445566666543
No 183
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.22 E-value=2.9e-09 Score=121.25 Aligned_cols=254 Identities=12% Similarity=0.012 Sum_probs=157.3
Q ss_pred CCceEEEEcCCCCEEEEEEcC------------------------CeEEEEccCCceEEEEcC--CCCCEEEEEEEcCCc
Q 001109 43 STASILAFDHVQSLLAIGTQD------------------------GRIKVIGGDNIEGLLVSP--KQLAFKHLEFLQNQG 96 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~D------------------------G~I~vw~~~~~~~~~~~~--~~~~V~~l~Fs~dg~ 96 (1155)
+.+..|||+|+|+++++...+ ++|.+|+..+.+.+.... +-.....|+|+++|.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 579999999999999988877 479999987666554433 234688999999998
Q ss_pred EEEEEecCCeEEEEECCCCc-eeeeec---------CC-CceeEEEEec-CCCEEEEEe-CCCcEEEEEecCCCceeecc
Q 001109 97 FLVSISSGNEIQLWDLEARR-ITSTLP---------WE-SNITAFSVIF-GTSYMYIGD-EYGMVYVLKYDTEEGKLIHS 163 (1155)
Q Consensus 97 ~LvS~s~Dg~I~vWDl~t~~-~~~~l~---------~~-~~Vtsva~sp-d~~~l~~G~-~dG~V~vw~~d~~~~~l~~~ 163 (1155)
.+++...++.|++||..... .+.++. .+ ...+.++|+| ++.++++.+ .++.|++|+ .. +++..
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~--~~-g~~~~- 179 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS--PS-GKFVT- 179 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC--TT-SCEEE-
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc--CC-CCEEE-
Confidence 77777788999999986553 454442 11 3688999999 677666664 578776664 32 22220
Q ss_pred ceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeeccccccccccc
Q 001109 164 PYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFS 243 (1155)
Q Consensus 164 ~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~ 243 (1155)
.+.. . + ..............+ ++++|+. + +
T Consensus 180 --~~~~---------------~------g---------------~~~~~~~~~~~~p~g-----ia~d~~~-g------~ 209 (329)
T 3fvz_A 180 --QWGE---------------E------S---------------SGSSPRPGQFSVPHS-----LALVPHL-D------Q 209 (329)
T ss_dssp --EECE---------------E------C---------------CSSSCCTTEESCEEE-----EEEETTT-T------E
T ss_pred --Eecc---------------C------C---------------CCCCCCCcccCCCcE-----EEEECCC-C------E
Confidence 0000 0 0 000000000111233 8999873 2 4
Q ss_pred EEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEec------CCCe
Q 001109 244 QLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASN------DGSV 317 (1155)
Q Consensus 244 ~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~p------dG~~ 317 (1155)
.+++...++.|++||..+++.+..... . .+...+.+++|+ | +|..
T Consensus 210 l~v~d~~~~~I~~~~~~~G~~~~~~~~-----~-----------------------~~~~~~~~~~~~-pg~~~~~~g~~ 260 (329)
T 3fvz_A 210 LCVADRENGRIQCFKTDTKEFVREIKH-----A-----------------------SFGRNVFAISYI-PGFLFAVNGKP 260 (329)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECC-----T-----------------------TTTTCEEEEEEE-TTEEEEEECCC
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEec-----c-----------------------ccCCCcceeeec-CCEEEEeCCCE
Confidence 566666789999999998888765321 0 023457788888 7 4444
Q ss_pred EEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEE
Q 001109 318 LAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLT 397 (1155)
Q Consensus 318 lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~lt 397 (1155)
.++.+.+..|++|++.++..... +.. ...+-.....+++. +++.+|++...+ +.+.
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~------------~~~-~~~~~~~p~~ia~~-------~dG~lyvad~~~----~~I~ 316 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDV------------FKP-VRKHFDMPHDIVAS-------EDGTVYIGDAHT----NTVW 316 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEE------------ECC-SSSCCSSEEEEEEC-------TTSEEEEEESSS----CCEE
T ss_pred EeccCCCcEEEEEEcCCCeEEEE------------EcC-CCCccCCeeEEEEC-------CCCCEEEEECCC----CEEE
Confidence 44444556899999887653221 000 01122234556553 355888887653 4677
Q ss_pred EEEccC
Q 001109 398 MLYLNW 403 (1155)
Q Consensus 398 vl~l~~ 403 (1155)
++.++.
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 766543
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.21 E-value=6e-09 Score=115.42 Aligned_cols=200 Identities=9% Similarity=0.125 Sum_probs=132.5
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC------CCCCEEEEEEE-cCCcEEEEEec-CCeEEEEE
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP------KQLAFKHLEFL-QNQGFLVSISS-GNEIQLWD 111 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~------~~~~V~~l~Fs-~dg~~LvS~s~-Dg~I~vWD 111 (1155)
|+...+.+++++|+|+++++.+.++.|++|+..+........ +...+..++|. +++..+++... ++.|.+||
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 455678999999999999998899999999987543322211 12468899996 56544444433 88999999
Q ss_pred CCCCceeeeecCC--CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccc
Q 001109 112 LEARRITSTLPWE--SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQR 189 (1155)
Q Consensus 112 l~t~~~~~~l~~~--~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~ 189 (1155)
.+++.+..+... ..+.+++++|+++++++...++.|++| +... +.. ..+..
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~--~~~g-~~~---~~~~~-------------------- 159 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIF--DQNG-NVL---HKFGC-------------------- 159 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEE--CTTS-CEE---EEEEC--------------------
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEE--cCCC-CEE---EEeCC--------------------
Confidence 567777666432 578999999999877766677877766 4322 211 00000
Q ss_pred cccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEec
Q 001109 190 EKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRG 269 (1155)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~ 269 (1155)
. . ....+.+ ++++|+ + +.+++...++.|++||.. ++.+...+
T Consensus 160 ----------------~--~------~~~~p~~-----i~~~~~--g------~l~v~~~~~~~i~~~~~~-g~~~~~~~ 201 (286)
T 1q7f_A 160 ----------------S--K------HLEFPNG-----VVVNDK--Q------EIFISDNRAHCVKVFNYE-GQYLRQIG 201 (286)
T ss_dssp ----------------T--T------TCSSEEE-----EEECSS--S------EEEEEEGGGTEEEEEETT-CCEEEEES
T ss_pred ----------------C--C------ccCCcEE-----EEECCC--C------CEEEEECCCCEEEEEcCC-CCEEEEEc
Confidence 0 0 0111223 889886 3 445555568999999975 44443311
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCC-cEEEEEcC
Q 001109 270 SKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDG-DILLWNLR 333 (1155)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG-~I~lWd~~ 333 (1155)
. . + +...+..++++ ++|..+++...++ .|++|+..
T Consensus 202 ~-----~-----------g------------~~~~p~~i~~d-~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 202 G-----E-----------G------------ITNYPIGVGIN-SNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp C-----T-----------T------------TSCSEEEEEEC-TTCCEEEEECSSSCEEEEECTT
T ss_pred c-----C-----------C------------ccCCCcEEEEC-CCCCEEEEeCCCCEEEEEECCC
Confidence 1 0 0 12457899998 9999888888886 99999964
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.16 E-value=1.8e-08 Score=114.66 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=49.4
Q ss_pred CEEEEEEEcCCcEEEEEe---------cCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCC---CcEEEEE
Q 001109 85 AFKHLEFLQNQGFLVSIS---------SGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEY---GMVYVLK 152 (1155)
Q Consensus 85 ~V~~l~Fs~dg~~LvS~s---------~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~d---G~V~vw~ 152 (1155)
.+..++| ||.+++... .++.|.+||+.+++.. .+ ..+.+++|+|||++|+....+ +...||.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI---ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE---ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec---ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 4667777 777777542 2567999999988653 33 568899999999998877654 5656677
Q ss_pred ecCCCce
Q 001109 153 YDTEEGK 159 (1155)
Q Consensus 153 ~d~~~~~ 159 (1155)
++...++
T Consensus 90 ~~~~~g~ 96 (347)
T 2gop_A 90 ADLETLS 96 (347)
T ss_dssp EETTTTE
T ss_pred EECCCCc
Confidence 7765544
No 186
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=99.11 E-value=2.4e-12 Score=135.16 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001109 1082 KSRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154 (1155)
Q Consensus 1082 ~~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~ 1154 (1155)
..+++.+++++ |+||++||.+||+++|+|||||+.|++||++|+++|+.|++.|++|+|+ |||+
T Consensus 132 ~~d~l~~~~~~-----l~ev~~im~~ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~----~~~~ 195 (196)
T 2nut_C 132 ARRNLGSINTE-----LQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMR----STYA 195 (196)
T ss_dssp ----------------------CCEEEHHHHC-----------------------------------------
T ss_pred chhHHHHHHHH-----HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc
Confidence 46788888888 8899999999999999999999999999999999999999999999999 9997
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.07 E-value=9.1e-09 Score=114.78 Aligned_cols=197 Identities=7% Similarity=-0.069 Sum_probs=131.6
Q ss_pred CCCCceEEEEcCCCC-EEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceee
Q 001109 41 IPSTASILAFDHVQS-LLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITS 119 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~ 119 (1155)
+......++|+|+|+ ++++++.++.|.+|+..+....+. .+...+..++|+++|..+++...++.|.+||..+++...
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEM-HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES 104 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEE-SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEE-CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence 345678899999998 888999999999999887622222 345678999999998877776667899999998887543
Q ss_pred eecC-----CCceeEEEEecCCCEEEE----EeC-----------CCcEEEEEecCCCceeeccceeccCCceeeeceeE
Q 001109 120 TLPW-----ESNITAFSVIFGTSYMYI----GDE-----------YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLL 179 (1155)
Q Consensus 120 ~l~~-----~~~Vtsva~spd~~~l~~----G~~-----------dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 179 (1155)
.... ...+.+++++|+|+++++ |+. .+.-.||.++.. +++.. +.
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~----~~----------- 168 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA----PI----------- 168 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE----EE-----------
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE----ee-----------
Confidence 3221 135678999999998776 331 011245666654 22210 00
Q ss_pred eeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEc
Q 001109 180 LEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDV 259 (1155)
Q Consensus 180 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~ 259 (1155)
. ......+ ++|+|++ +.+++...++.|.+||+
T Consensus 169 ------------~-----------------------~~~~~~g-----i~~s~dg--------~~lv~~~~~~~i~~~~~ 200 (296)
T 3e5z_A 169 ------------R-----------------------DRVKPNG-----LAFLPSG--------NLLVSDTGDNATHRYCL 200 (296)
T ss_dssp ------------C-----------------------CCSSEEE-----EEECTTS--------CEEEEETTTTEEEEEEE
T ss_pred ------------c-----------------------CCCCCcc-----EEECCCC--------CEEEEeCCCCeEEEEEE
Confidence 0 0111223 8899984 45666667899999998
Q ss_pred c-CCeE-EEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcC
Q 001109 260 S-EDKV-VLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 260 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~ 333 (1155)
. ++++ ..... +.. +...+.++++. ++|++.++. ++.|.+||..
T Consensus 201 ~~~g~~~~~~~~-----~~~-----------------------~~~~p~~i~~d-~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 201 NARGETEYQGVH-----FTV-----------------------EPGKTDGLRVD-AGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp CSSSCEEEEEEE-----ECC-----------------------SSSCCCSEEEB-TTSCEEEEE--TTEEEEECTT
T ss_pred CCCCcCcCCCeE-----eeC-----------------------CCCCCCeEEEC-CCCCEEEEc--CCeEEEECCC
Confidence 7 5554 21100 000 13345678998 999866666 8899999986
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.07 E-value=2.4e-08 Score=126.19 Aligned_cols=155 Identities=11% Similarity=0.006 Sum_probs=101.7
Q ss_pred ccCCcCcEEEEEEC-----CCcEEEEeCCC------CCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC-
Q 001109 546 EDYLVERLYIAGYR-----DGSTRIWDATY------PTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS- 613 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~-----DgtVrlWD~~~------~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d- 613 (1155)
.++|+|+.|+.++. +..|++||+.+ +... ...+. .+...+.. .|+|+|+.|+..+..
T Consensus 239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~l~---------~~~~~~~~-~~s~dg~~l~~~s~~~ 307 (710)
T 2xdw_A 239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK-WVKLI---------DNFEGEYD-YVTNEGTVFTFKTNRH 307 (710)
T ss_dssp EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC-CEEEE---------CSSSSCEE-EEEEETTEEEEEECTT
T ss_pred EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc-eEEee---------CCCCcEEE-EEeccCCEEEEEECCC
Confidence 56788887776664 56899999876 4210 11121 22234444 589999988877653
Q ss_pred ---CeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCC--CeEEEEEcCCCCEEEEEeCCCc--EEEE
Q 001109 614 ---GLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNS--PICNLKFSNFGARLAVGFECSQ--VAML 686 (1155)
Q Consensus 614 ---G~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~--~VtslafSpdg~~LAsGs~Dg~--V~lW 686 (1155)
+.|.+|++.+.... .+ ..+..|.. .|..++|++++.+++++..|+. |.+|
T Consensus 308 ~~~~~l~~~d~~~~~~~----------------------~~-~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~ 364 (710)
T 2xdw_A 308 SPNYRLINIDFTDPEES----------------------KW-KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (710)
T ss_dssp CTTCEEEEEETTSCCGG----------------------GC-EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEEeCCCCCcc----------------------cc-eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE
Confidence 35888888664210 01 12233433 6888999988888999999985 5566
Q ss_pred ecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEE----eCCceEEEEECCCCc
Q 001109 687 DISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFM----TKDAHIVVCDSTTGH 759 (1155)
Q Consensus 687 Di~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~----s~Dg~I~vwd~~tG~ 759 (1155)
|+.++..+.... .+.+.|.+++++ ||+..|+.. +..++|.+||+.+|+
T Consensus 365 ~~~~g~~~~~l~---~~~~~v~~~~~s----------------------~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 365 DLATGALLKIFP---LEVGSVVGYSGQ----------------------KKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTTCCEEEEEC---CCSSEEEEEECC----------------------TTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCCCCEEEecC---CCCceEEEEecC----------------------CCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 776676655543 356678888887 677666522 345899999999987
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.06 E-value=1.3e-08 Score=128.54 Aligned_cols=116 Identities=10% Similarity=0.072 Sum_probs=85.3
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCC-----eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCe-------
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDG-----RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNE------- 106 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG-----~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~------- 106 (1155)
.+|...+..++|||||++||.+..++ +|+||+..+.+.+........+..++|+|||..|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence 35555688999999999999887654 899999988776542211223567899999999998887765
Q ss_pred ---------EEEEECCCCce----eeeecC-CCceeEEEEecCCCEEEEEeC-----CCcEEEEEec
Q 001109 107 ---------IQLWDLEARRI----TSTLPW-ESNITAFSVIFGTSYMYIGDE-----YGMVYVLKYD 154 (1155)
Q Consensus 107 ---------I~vWDl~t~~~----~~~l~~-~~~Vtsva~spd~~~l~~G~~-----dG~V~vw~~d 154 (1155)
|.+|++.++.. +..... ...+..++|+|||++|+++.. +..|++|+.+
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence 99999998762 222222 245788999999999988765 4456666554
No 190
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.06 E-value=2.6e-08 Score=110.21 Aligned_cols=199 Identities=10% Similarity=0.047 Sum_probs=131.3
Q ss_pred CCCCceEEEE-cCCCCEEEEEEc-CCeEEEEccCCceEEEEc--CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc
Q 001109 41 IPSTASILAF-DHVQSLLAIGTQ-DGRIKVIGGDNIEGLLVS--PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR 116 (1155)
Q Consensus 41 ~~~~vs~laf-sp~g~lLAsgs~-DG~I~vw~~~~~~~~~~~--~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~ 116 (1155)
+...+..+++ +++|+++++... ++.|++|+..+.. +... .+...+..++|+++|..+++...++.|.+||.. ++
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF-VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCE-EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcE-EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence 3456889999 578887777654 8999999965543 3322 233568999999998877777778999999964 55
Q ss_pred eeeeecC---CCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccc
Q 001109 117 ITSTLPW---ESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGK 193 (1155)
Q Consensus 117 ~~~~l~~---~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~ 193 (1155)
.+..+.. ...+.+++++|+++++++...++.|++|+.+. ..+. .+..
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~~----~~~~------------------------ 202 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG--QYLR----QIGG------------------------ 202 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC--CEEE----EESC------------------------
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC--CEEE----EEcc------------------------
Confidence 5555532 25689999999999777667788888775422 1110 0000
Q ss_pred cccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCC-eEEEEEccCCeEEEEecccc
Q 001109 194 AAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANG-LIILWDVSEDKVVLVRGSKD 272 (1155)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG-~I~lWd~~~~~~~~~~~~~~ 272 (1155)
.+ ......+ ++++|+ + +.+++...++ .|.+||.. ++.+.....
T Consensus 203 ----------------~g----~~~~p~~-----i~~d~~--G------~l~v~~~~~~~~i~~~~~~-g~~~~~~~~-- 246 (286)
T 1q7f_A 203 ----------------EG----ITNYPIG-----VGINSN--G------EILIADNHNNFNLTIFTQD-GQLISALES-- 246 (286)
T ss_dssp ----------------TT----TSCSEEE-----EEECTT--C------CEEEEECSSSCEEEEECTT-SCEEEEEEE--
T ss_pred ----------------CC----ccCCCcE-----EEECCC--C------CEEEEeCCCCEEEEEECCC-CCEEEEEcc--
Confidence 00 0011223 888886 3 4566666665 99999964 555443111
Q ss_pred cccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 273 LQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
.. ....+.+++|+ ++|+.+++ +.|+.|++|++...
T Consensus 247 ---~~-----------------------~~~~~~~i~~~-~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 247 ---KV-----------------------KHAQCFDVALM-DDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ---SS-----------------------CCSCEEEEEEE-TTTEEEEE-ETTTEEEEEECSCC
T ss_pred ---cC-----------------------CCCcceeEEEC-CCCcEEEE-CCCCeEEEEEcccc
Confidence 00 12346789999 99987776 67999999998653
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.05 E-value=3.8e-08 Score=111.40 Aligned_cols=207 Identities=12% Similarity=0.062 Sum_probs=136.2
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecC----CeEEEEECCC
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSG----NEIQLWDLEA 114 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~D----g~I~vWDl~t 114 (1155)
++...+..++|+|+|+++++++.++.|.+|+..+.+..... .+...+..++|+++|..+++...+ +.|.+||.++
T Consensus 42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence 45566789999999998889999999999998766544322 345679999999998877776666 6899999998
Q ss_pred Cceeeeec---CCCceeEEEEecCCCEEEEEeCC----CcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccc
Q 001109 115 RRITSTLP---WESNITAFSVIFGTSYMYIGDEY----GMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHI 187 (1155)
Q Consensus 115 ~~~~~~l~---~~~~Vtsva~spd~~~l~~G~~d----G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~ 187 (1155)
+.....+. ....+.+++++|+|+++++...+ +...||.++...+++.. +.
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~------------------- 178 (333)
T 2dg1_A 122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP----II------------------- 178 (333)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE----EE-------------------
T ss_pred CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE----ee-------------------
Confidence 87653332 22568999999999876655431 23466777765433210 00
Q ss_pred cccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEE-EcCCeEEEEEccC-CeEE
Q 001109 188 QREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLV-YANGLIILWDVSE-DKVV 265 (1155)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg-~~dG~I~lWd~~~-~~~~ 265 (1155)
. ......+ ++++|++ +.|+++ ..++.|.+||+.+ +..+
T Consensus 179 ----~-----------------------~~~~~~~-----i~~~~dg--------~~l~v~~~~~~~i~~~d~~~~g~~~ 218 (333)
T 2dg1_A 179 ----Q-----------------------NISVANG-----IALSTDE--------KVLWVTETTANRLHRIALEDDGVTI 218 (333)
T ss_dssp ----E-----------------------EESSEEE-----EEECTTS--------SEEEEEEGGGTEEEEEEECTTSSSE
T ss_pred ----c-----------------------CCCcccc-----eEECCCC--------CEEEEEeCCCCeEEEEEecCCCcCc
Confidence 0 0111223 8888874 445544 4578999999864 3322
Q ss_pred EEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcC
Q 001109 266 LVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLR 333 (1155)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~ 333 (1155)
..... ...... . ....+..+++. ++|..+++...++.|.+||..
T Consensus 219 ~~~~~-~~~~~~--~--------------------~~~~~~~i~~d-~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 219 QPFGA-TIPYYF--T--------------------GHEGPDSCCID-SDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEE-EEEEEC--C--------------------SSSEEEEEEEB-TTCCEEEEEETTTEEEEECTT
T ss_pred ccccc-eEEEec--C--------------------CCCCCCceEEC-CCCCEEEEEcCCCEEEEECCC
Confidence 11000 000000 0 01246789998 999988888888999999974
No 192
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.05 E-value=5.1e-09 Score=119.19 Aligned_cols=207 Identities=10% Similarity=0.019 Sum_probs=136.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCce-EEEEc----------CCCCCEEEEEEEc-CCcEEEEEe-cCCe
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIE-GLLVS----------PKQLAFKHLEFLQ-NQGFLVSIS-SGNE 106 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~-~~~~~----------~~~~~V~~l~Fs~-dg~~LvS~s-~Dg~ 106 (1155)
++-..+..|+|+|+|+++++.+.+++|++|+..+.. .+... .+-.....|+|+| ++..+++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 445578899999999999999999999999987642 22222 1223688999999 666666665 5899
Q ss_pred EEEEECCCCceeeeecCC-----------CceeEEEEecC-CCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceee
Q 001109 107 IQLWDLEARRITSTLPWE-----------SNITAFSVIFG-TSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEV 174 (1155)
Q Consensus 107 I~vWDl~t~~~~~~l~~~-----------~~Vtsva~spd-~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 174 (1155)
|++|| .+++.+..+... .....++++|+ ++++++...++.|++|+.+ .+++.. .+..
T Consensus 168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~--~G~~~~---~~~~----- 236 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD--TKEFVR---EIKH----- 236 (329)
T ss_dssp EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT--TCCEEE---EECC-----
T ss_pred EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC--CCcEEE---EEec-----
Confidence 99999 567776666421 24789999999 5555555667778777554 333320 0100
Q ss_pred eceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecc----cccccccccEEEEEEc
Q 001109 175 FNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQK----HVNSTLGFSQLLLVYA 250 (1155)
Q Consensus 175 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~----~~~~~~~~~~llsg~~ 250 (1155)
+ . ....+.. ++++|.- ++ +..++.+.
T Consensus 237 -------------------------------~--~------~~~~~~~-----~~~~pg~~~~~~g------~~~v~~~~ 266 (329)
T 3fvz_A 237 -------------------------------A--S------FGRNVFA-----ISYIPGFLFAVNG------KPYFGDQE 266 (329)
T ss_dssp -------------------------------T--T------TTTCEEE-----EEEETTEEEEEEC------CCCTTCSC
T ss_pred -------------------------------c--c------cCCCcce-----eeecCCEEEEeCC------CEEeccCC
Confidence 0 0 0111122 6666610 01 11222334
Q ss_pred CCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEE
Q 001109 251 NGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLW 330 (1155)
Q Consensus 251 dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lW 330 (1155)
++.|++||..+++++...+.. .+ +...+.+++++ |||..+++...++.|++|
T Consensus 267 ~~~v~~~~~~~g~~~~~~~~~---------------~~------------~~~~p~~ia~~-~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 267 PVQGFVMNFSSGEIIDVFKPV---------------RK------------HFDMPHDIVAS-EDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp CCCEEEEETTTCCEEEEECCS---------------SS------------CCSSEEEEEEC-TTSEEEEEESSSCCEEEE
T ss_pred CcEEEEEEcCCCeEEEEEcCC---------------CC------------ccCCeeEEEEC-CCCCEEEEECCCCEEEEE
Confidence 568999999999988763210 00 24557899998 999888888899999999
Q ss_pred EcCCC
Q 001109 331 NLRAA 335 (1155)
Q Consensus 331 d~~s~ 335 (1155)
++...
T Consensus 319 ~~~~~ 323 (329)
T 3fvz_A 319 TLTEK 323 (329)
T ss_dssp EEEEC
T ss_pred eCCcc
Confidence 98753
No 193
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=99.03 E-value=4.3e-13 Score=139.60 Aligned_cols=65 Identities=28% Similarity=0.384 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001109 1081 PKSRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRMERRKWWQ 1154 (1155)
Q Consensus 1081 ~~~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~~~~ww~ 1154 (1155)
+..+++.+++++ |+||++||.+||++|||||||||.|++||++|+++|+.|++.|++|+|+ ||||
T Consensus 122 ~~~d~l~~~~~~-----l~ev~~im~~Ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~----mwwk 186 (189)
T 4b93_A 122 KSLDKVMETQAQ-----VDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARA----MCMK 186 (189)
T ss_dssp -------CCHHH-----HHTTTTCCEECCCCBCTTSSBCCCCEETTCC--------------------------
T ss_pred cchhhHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 345778888888 8999999999999999999999999999999999999999999999999 9998
No 194
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.02 E-value=2.3e-09 Score=123.96 Aligned_cols=111 Identities=5% Similarity=-0.138 Sum_probs=75.6
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEE-------------------EEEEcCCcEEEEE----
Q 001109 46 SILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKH-------------------LEFLQNQGFLVSI---- 101 (1155)
Q Consensus 46 s~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~-------------------l~Fs~dg~~LvS~---- 101 (1155)
..++|+|||++||.++.++.|++|+..+.+...... +...... +.|+|++.+++.+
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 347899999999999999999999987765433222 2222222 3456676665543
Q ss_pred -ecCCeEEEEECCCCceeeeecCCCceeEEEEec-CCCEEEEEeCCCc----EEEEEecCC
Q 001109 102 -SSGNEIQLWDLEARRITSTLPWESNITAFSVIF-GTSYMYIGDEYGM----VYVLKYDTE 156 (1155)
Q Consensus 102 -s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~sp-d~~~l~~G~~dG~----V~vw~~d~~ 156 (1155)
..+..|.+||+.+++..........+..+.|+| ++..|+..+.++. .+||.++..
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED 224 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence 356789999999988765555557789999999 7887766655432 344555553
No 195
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.02 E-value=7.5e-09 Score=117.76 Aligned_cols=109 Identities=8% Similarity=0.050 Sum_probs=81.0
Q ss_pred CCceEEEEcCCCCEEEEEEcC---C--eEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC-------------
Q 001109 43 STASILAFDHVQSLLAIGTQD---G--RIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG------------- 104 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~D---G--~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D------------- 104 (1155)
..+..++|||||++||.++.+ + .|.+|+..+.+......... +..++|+|||.+|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 457889999999999988764 3 47778877665443332233 9999999999988887643
Q ss_pred --------------CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCC-------cEEEEEec
Q 001109 105 --------------NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYG-------MVYVLKYD 154 (1155)
Q Consensus 105 --------------g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG-------~V~vw~~d 154 (1155)
..|.+||+.+++.+..+... .+..++|+|+| +++++..++ ...||.+|
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d 206 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE 206 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence 57999999998763444333 78899999999 888876542 45677777
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.95 E-value=8.7e-09 Score=129.83 Aligned_cols=247 Identities=9% Similarity=-0.111 Sum_probs=143.9
Q ss_pred CCCCCceEEEEcCCCCEEEEE-----EcCCeEEEEccCCceEE-EEcCCCCCEEEEEEEcCCcEEEEEecCCe-------
Q 001109 40 GIPSTASILAFDHVQSLLAIG-----TQDGRIKVIGGDNIEGL-LVSPKQLAFKHLEFLQNQGFLVSISSGNE------- 106 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsg-----s~DG~I~vw~~~~~~~~-~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~------- 106 (1155)
||...+..++|||||++||.+ +.+.+|++|+..+.+.+ ...........++|+|||..|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 566678899999999999944 34568999999887654 11111112267899999999999988766
Q ss_pred ------EEEEECCCCc----eeeeecCC-CceeEEEEecCCCEEEEEeCCC--cEEEEEecCCCceeeccceeccCCcee
Q 001109 107 ------IQLWDLEARR----ITSTLPWE-SNITAFSVIFGTSYMYIGDEYG--MVYVLKYDTEEGKLIHSPYYVPKDVIE 173 (1155)
Q Consensus 107 ------I~vWDl~t~~----~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG--~V~vw~~d~~~~~l~~~~~~i~~~~~~ 173 (1155)
|.+|++.++. ++.....+ ..+.+++++|||++|+++..++ +..||.++...+.+.. ...+..
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~--l~~~~~--- 272 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL--LVKGVG--- 272 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE--EEECSS---
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE--eecCCC---
Confidence 9999999876 33333333 5788999999999988877655 4455666654332210 111110
Q ss_pred eeceeEeeEeccccccccc--ccccccceeeecCCCCCC--CcccccccccccceeeEEEEeecccccccccccEEEEEE
Q 001109 174 VFNHLLLEFCPNHIQREKG--KAAFNASLLFYCMPPDES--GFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVY 249 (1155)
Q Consensus 174 ~~~~~~l~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~ 249 (1155)
......| |++. .+.. .-+-+..+..+.+..... -..+-.+.+ ...++.+.++ + + ..+++..
T Consensus 273 --~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~--~------~lv~~~~ 337 (695)
T 2bkl_A 273 --AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-G--G------HLSLEYL 337 (695)
T ss_dssp --CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-T--T------EEEEEEE
T ss_pred --ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-C--C------EEEEEEE
Confidence 0112223 3332 2110 000112333333321110 000100110 0123336665 2 2 5788888
Q ss_pred cCCeEEEEEcc-CCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEc----C
Q 001109 250 ANGLIILWDVS-EDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYV----D 324 (1155)
Q Consensus 250 ~dG~I~lWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~----D 324 (1155)
.||..+||.+. +++.+.... +. +...|..++++ +||+.|+..+. .
T Consensus 338 ~dg~~~l~~~~~~g~~~~~l~-----~~------------------------~~~~v~~~~~s-~d~~~l~~~~ss~~~P 387 (695)
T 2bkl_A 338 KDATSEVRVATLKGKPVRTVQ-----LP------------------------GVGAASNLMGL-EDLDDAYYVFTSFTTP 387 (695)
T ss_dssp ETTEEEEEEEETTCCEEEECC-----CS------------------------SSSEECCCBSC-TTCSEEEEEEEETTEE
T ss_pred ECCEEEEEEEeCCCCeeEEec-----CC------------------------CCeEEEEeecC-CCCCEEEEEEcCCCCC
Confidence 89999998765 344333211 00 14456778888 89988885544 4
Q ss_pred CcEEEEEcCCCC
Q 001109 325 GDILLWNLRAAA 336 (1155)
Q Consensus 325 G~I~lWd~~s~~ 336 (1155)
++|++||+.++.
T Consensus 388 ~~v~~~d~~~g~ 399 (695)
T 2bkl_A 388 RQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEETTTCC
T ss_pred CEEEEEECCCCc
Confidence 789999998764
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.94 E-value=3.1e-07 Score=104.39 Aligned_cols=194 Identities=11% Similarity=-0.005 Sum_probs=132.3
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCCceeeee
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEARRITSTL 121 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~~~~~~l 121 (1155)
..+..++++. +++.++...+++|.+||..+.+.+...+.......++|++++ .|+.++ .++.|.+||+.+++...++
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEE
Confidence 4467788864 556666677899999999887776655555678999999997 555555 7899999999999988777
Q ss_pred cCCC------ceeEEEEecCCCEEEEEe--CCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccc
Q 001109 122 PWES------NITAFSVIFGTSYMYIGD--EYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGK 193 (1155)
Q Consensus 122 ~~~~------~Vtsva~spd~~~l~~G~--~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~ 193 (1155)
.... ....+++ ++..|++++ .++.|.++ |..++++.. .++.
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~vi--D~~t~~~~~---~i~~------------------------ 170 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKI--DTETDKVVD---ELTI------------------------ 170 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEE--ETTTTEEEE---EEEC------------------------
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEE--ECCCCeEEE---EEEc------------------------
Confidence 6544 6677888 456666665 36777665 554444321 0100
Q ss_pred cccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcC----------CeEEEEEccCCe
Q 001109 194 AAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYAN----------GLIILWDVSEDK 263 (1155)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~d----------G~I~lWd~~~~~ 263 (1155)
.....+ +.++|+ + +.++++..+ +.|.+||..+++
T Consensus 171 -----------------------g~~p~~-----i~~~~d--G------~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~ 214 (328)
T 3dsm_A 171 -----------------------GIQPTS-----LVMDKY--N------KMWTITDGGYEGSPYGYEAPSLYRIDAETFT 214 (328)
T ss_dssp -----------------------SSCBCC-----CEECTT--S------EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE
T ss_pred -----------------------CCCccc-----eEEcCC--C------CEEEEECCCccCCccccCCceEEEEECCCCe
Confidence 001123 677776 3 444444444 789999999998
Q ss_pred EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCC
Q 001109 264 VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAAS 337 (1155)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~ 337 (1155)
+...... . .......++|+ |||++|.++.. .|.+||+.++..
T Consensus 215 v~~~~~~-----~------------------------~g~~p~~la~~-~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 215 VEKQFKF-----K------------------------LGDWPSEVQLN-GTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp EEEEEEC-----C------------------------TTCCCEEEEEC-TTSCEEEEESS--SEEEEETTCSSC
T ss_pred EEEEEec-----C------------------------CCCCceeEEEe-cCCCEEEEEcc--EEEEEECCCCce
Confidence 7654110 0 02246799999 99999988754 899999987653
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.94 E-value=3.4e-08 Score=109.71 Aligned_cols=189 Identities=11% Similarity=0.014 Sum_probs=135.8
Q ss_pred CCCEEEEEEcCCeEEEEccCCceEEEEcCCC--CCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC--Ccee
Q 001109 53 VQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQ--LAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE--SNIT 128 (1155)
Q Consensus 53 ~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~--~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~--~~Vt 128 (1155)
.+++|++++.|+.|.+||..+.+.+..++.. ..+.++.++|+|+.|+ +.++.|..||. +++.+.++..+ ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 4689999999999999999777777766433 3688999999998877 45788999999 89998888764 4788
Q ss_pred EEEEecCCCEEEEEeC-CCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCC
Q 001109 129 AFSVIFGTSYMYIGDE-YGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPP 207 (1155)
Q Consensus 129 sva~spd~~~l~~G~~-dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 207 (1155)
++.+.|+|+++++.+. ++ +++.++.+ +++. +.+.. +.
T Consensus 81 ~~~~~~dG~~lv~~~~~~~--~v~~vd~~-Gk~l---~~~~~------------------------------------~~ 118 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPS--TILEVNMK-GEVL---SKTEF------------------------------------ET 118 (276)
T ss_dssp EEEECTTSCEEEEEESTTE--EEEEECTT-SCEE---EEEEE------------------------------------CC
T ss_pred ccEECCCCCEEEEecCCCC--EEEEEeCC-CCEE---EEEec------------------------------------cC
Confidence 9999999999998876 55 44666653 3332 01100 00
Q ss_pred CCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCC
Q 001109 208 DESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNA 287 (1155)
Q Consensus 208 ~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1155)
.. . ..+..... +.+.++ + +++++.+.++.|..||.. |+.+.....
T Consensus 119 ~~---~-~~~~~~~~-----v~~~~~--G------~~lv~~~~~~~v~~~d~~-G~~~w~~~~----------------- 163 (276)
T 3no2_A 119 GI---E-RPHAQFRQ-----INKNKK--G------NYLVPLFATSEVREIAPN-GQLLNSVKL----------------- 163 (276)
T ss_dssp SC---S-SGGGSCSC-----CEECTT--S------CEEEEETTTTEEEEECTT-SCEEEEEEC-----------------
T ss_pred CC---C-cccccccC-----ceECCC--C------CEEEEecCCCEEEEECCC-CCEEEEEEC-----------------
Confidence 00 0 01112223 555665 4 678888889999999998 888764221
Q ss_pred CCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCC
Q 001109 288 GHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAA 336 (1155)
Q Consensus 288 ~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~ 336 (1155)
...+.++... ++|..++++..++.|..+|..+++
T Consensus 164 --------------~~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 164 --------------SGTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp --------------SSCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCC
T ss_pred --------------CCCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCc
Confidence 1234567777 899999999888899999988764
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.94 E-value=1.2e-07 Score=103.61 Aligned_cols=195 Identities=10% Similarity=-0.004 Sum_probs=126.1
Q ss_pred CceEEEEcCCCCEEE-EEEcCCeEEEEccCCceEEEE-cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeee
Q 001109 44 TASILAFDHVQSLLA-IGTQDGRIKVIGGDNIEGLLV-SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTL 121 (1155)
Q Consensus 44 ~vs~lafsp~g~lLA-sgs~DG~I~vw~~~~~~~~~~-~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l 121 (1155)
.+..++++|+|++++ +.+.++.|.+|+..+...... ......+..++|.++|..+++.. ++.|.+||..++... .+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 678999999999777 547789999998765443322 22234678899999987555554 889999998766543 23
Q ss_pred c--CCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccc
Q 001109 122 P--WESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNAS 199 (1155)
Q Consensus 122 ~--~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 199 (1155)
. ....+.++++++++++.++...++.|.+| +....... ...
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~--~~~~~~~~----~~~------------------------------- 145 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKL--AAGSKTQT----VLP------------------------------- 145 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEE--CTTCCSCE----ECC-------------------------------
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEE--ECCCceeE----eec-------------------------------
Confidence 2 22578999999999866655667777665 44321110 000
Q ss_pred eeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccccccc
Q 001109 200 LLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEI 279 (1155)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~ 279 (1155)
.. ......+ +++.|+ + +.+++...++.|.+||........... .
T Consensus 146 ---------~~-----~~~~p~~-----i~~~~~--g------~l~v~~~~~~~i~~~~~~~~~~~~~~~------~--- 189 (270)
T 1rwi_B 146 ---------FT-----GLNDPDG-----VAVDNS--G------NVYVTDTDNNRVVKLEAESNNQVVLPF------T--- 189 (270)
T ss_dssp ---------CC-----SCCSCCC-----EEECTT--C------CEEEEEGGGTEEEEECTTTCCEEECCC------S---
T ss_pred ---------cc-----cCCCcee-----EEEeCC--C------CEEEEECCCCEEEEEecCCCceEeecc------c---
Confidence 00 0112234 888886 3 444444557899999987765443200 0
Q ss_pred ccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 280 VDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
+...+.++++. ++|..+++...++.|.+|+..+.
T Consensus 190 ---------------------~~~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 190 ---------------------DITAPWGIAVD-EAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp ---------------------SCCSEEEEEEC-TTCCEEEEETTTSCEEEECTTCS
T ss_pred ---------------------CCCCceEEEEC-CCCCEEEEECCCCcEEEEcCCCC
Confidence 12457789998 89987777778899999998654
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.93 E-value=2e-08 Score=126.62 Aligned_cols=155 Identities=7% Similarity=-0.058 Sum_probs=95.4
Q ss_pred ccCCcCcEEEEEECCC----cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEe---CCCeEEE
Q 001109 546 EDYLVERLYIAGYRDG----STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGS---SSGLVWL 618 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~Dg----tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs---~dG~V~l 618 (1155)
.++|+|++|+.++.++ .|.+||..++.+..+. .+...+....+ ++|.+++... .++.|.+
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~------------~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~ 299 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV------------KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFE 299 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEE------------ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEE
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEee------------cCCCceEEEEe-cCCcEEEEECCCCCCCEEEE
Confidence 5677887777766665 6677766555433222 12224555555 6777444443 2578889
Q ss_pred EEeccCccccceeeeccCCceEEEecCCCCCceeEEeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEecC-CccEEEE
Q 001109 619 YNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVL-NSPICNLKFSNFGARLAVGFECSQVAMLDIS-TFSVLFI 696 (1155)
Q Consensus 619 wd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h-~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~-~~~~l~~ 696 (1155)
|++.+.... .|...+..+ ...|..++|+ ++++++++..|+..+||.+. ++..+..
T Consensus 300 ~d~~~~~~~----------------------~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~ 356 (695)
T 2bkl_A 300 VDPAKPARA----------------------SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRT 356 (695)
T ss_dssp EBTTBCSGG----------------------GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEE
T ss_pred EeCCCCCcc----------------------CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEE
Confidence 988654210 011222222 4467889998 77889999999999988765 3444443
Q ss_pred eccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEE----EEeCCceEEEEECCCCce
Q 001109 697 TDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLF----FMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 697 ~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~----s~s~Dg~I~vwd~~tG~~ 760 (1155)
... ...+.|..++|+ ||++.|+ +.+..++|.+||+.+|+.
T Consensus 357 l~~--~~~~~v~~~~~s----------------------~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 357 VQL--PGVGAASNLMGL----------------------EDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CCC--SSSSEECCCBSC----------------------TTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ecC--CCCeEEEEeecC----------------------CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 221 124556666665 6777777 445568999999999874
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.92 E-value=2.9e-07 Score=102.75 Aligned_cols=203 Identities=10% Similarity=0.071 Sum_probs=128.0
Q ss_pred CCceEEEEcCCCCEEEE-------EEcCCeEEEEccCCceEEEEcC-----CCCCEEEEEEEcCCcEEEEEecCCeEEEE
Q 001109 43 STASILAFDHVQSLLAI-------GTQDGRIKVIGGDNIEGLLVSP-----KQLAFKHLEFLQNQGFLVSISSGNEIQLW 110 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAs-------gs~DG~I~vw~~~~~~~~~~~~-----~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vW 110 (1155)
..+..++|+++|+++++ ++.++.|.+|+..+.+...... +...+..+.|+++++.|..++.++.|.+|
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~ 97 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence 46789999999998888 6788999999966554432211 23568899999993445555555689999
Q ss_pred ECCCCceeee-ecC-----CCceeEEEEecCCCEEEEEeCCC-------------cEEEEEecCCCceeeccceeccCCc
Q 001109 111 DLEARRITST-LPW-----ESNITAFSVIFGTSYMYIGDEYG-------------MVYVLKYDTEEGKLIHSPYYVPKDV 171 (1155)
Q Consensus 111 Dl~t~~~~~~-l~~-----~~~Vtsva~spd~~~l~~G~~dG-------------~V~vw~~d~~~~~l~~~~~~i~~~~ 171 (1155)
|.+ ++.... ... ...+.+++++++|++.++...++ ...||.++.. +++.. +.
T Consensus 98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~----~~--- 168 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ----VD--- 168 (314)
T ss_dssp ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE----EE---
T ss_pred eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE----ec---
Confidence 998 765433 221 13588999999998766655442 1345666654 22210 00
Q ss_pred eeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEe----ecccccccccccEEEE
Q 001109 172 IEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQ----FQKHVNSTLGFSQLLL 247 (1155)
Q Consensus 172 ~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~----p~~~~~~~~~~~~lls 247 (1155)
. ......+ ++++ |++ +.|++
T Consensus 169 --------------------~-----------------------~~~~~~~-----i~~~~~~d~dg--------~~l~v 192 (314)
T 1pjx_A 169 --------------------T-----------------------AFQFPNG-----IAVRHMNDGRP--------YQLIV 192 (314)
T ss_dssp --------------------E-----------------------EESSEEE-----EEEEECTTSCE--------EEEEE
T ss_pred --------------------c-----------------------CCCCcce-----EEEecccCCCC--------CEEEE
Confidence 0 0011122 7788 763 34555
Q ss_pred EE-cCCeEEEEEcc-CCeEEEEecccccccccccccCCCCCCCCCCccccccccccc-CCccEEEEEecCCCeEEEEEcC
Q 001109 248 VY-ANGLIILWDVS-EDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVE-KEISSLCWASNDGSVLAVGYVD 324 (1155)
Q Consensus 248 g~-~dG~I~lWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~V~sl~~s~pdG~~lasg~~D 324 (1155)
+. .++.|.+||.. +++........ .+. + +. ..+..+++. ++|..+++...+
T Consensus 193 ~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~-----------~------------~~~~~p~~i~~d-~~G~l~v~~~~~ 246 (314)
T 1pjx_A 193 AETPTKKLWSYDIKGPAKIENKKVWG--HIP-----------G------------THEGGADGMDFD-EDNNLLVANWGS 246 (314)
T ss_dssp EETTTTEEEEEEEEETTEEEEEEEEE--ECC-----------C------------CSSCEEEEEEEB-TTCCEEEEEETT
T ss_pred EECCCCeEEEEECCCCCccccceEEE--ECC-----------C------------CCCCCCCceEEC-CCCCEEEEEcCC
Confidence 54 57899999986 45432210000 000 0 11 346789998 999988888889
Q ss_pred CcEEEEEcCCCC
Q 001109 325 GDILLWNLRAAA 336 (1155)
Q Consensus 325 G~I~lWd~~s~~ 336 (1155)
+.|.+||..++.
T Consensus 247 ~~i~~~d~~~g~ 258 (314)
T 1pjx_A 247 SHIEVFGPDGGQ 258 (314)
T ss_dssp TEEEEECTTCBS
T ss_pred CEEEEEcCCCCc
Confidence 999999987553
No 202
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.89 E-value=1.5e-07 Score=104.76 Aligned_cols=114 Identities=5% Similarity=-0.054 Sum_probs=79.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC---C--CCCEEEEEEEcCCcEEEEEec-----------
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP---K--QLAFKHLEFLQNQGFLVSISS----------- 103 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~---~--~~~V~~l~Fs~dg~~LvS~s~----------- 103 (1155)
.+...+.+++|+|+|+++++...++.|.+|+..+.+...... . ...+..++|+|+|..+++.+.
T Consensus 66 ~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~ 145 (296)
T 3e5z_A 66 HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG 145 (296)
T ss_dssp SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence 345678999999999998887778899999985544332211 1 234567999999887776321
Q ss_pred ------CCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEec
Q 001109 104 ------GNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYD 154 (1155)
Q Consensus 104 ------Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d 154 (1155)
.+.|..+|.. ++.............++|+|+++++++.+.++.|++|+++
T Consensus 146 ~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 146 GEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN 201 (296)
T ss_dssp CCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred ccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence 2455555554 4443333334667899999999998777778888887765
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.88 E-value=4.9e-06 Score=91.63 Aligned_cols=199 Identities=12% Similarity=0.007 Sum_probs=130.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce-
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI- 117 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~- 117 (1155)
.+...+.+++++|+|+++++...++.|.+|+..+....+..+ ....+..+++.++|..+++...++.|..||.. ++.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 90 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIK 90 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEE
Confidence 344678999999999988776668999999987433223322 34578999999998877776668899999986 432
Q ss_pred eeeec-CCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccc
Q 001109 118 TSTLP-WESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAF 196 (1155)
Q Consensus 118 ~~~l~-~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~ 196 (1155)
...+. ....+.++++++++++.++...++.|.+| |. .++.. .+..+.
T Consensus 91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~--d~-~g~~~--~~~~~~--------------------------- 138 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRI--TD-DGKIR--EYELPN--------------------------- 138 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE--CT-TCCEE--EEECSS---------------------------
T ss_pred EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEE--CC-CCCEE--EecCCC---------------------------
Confidence 22222 23578999999999877766667766554 54 22221 000000
Q ss_pred ccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccc
Q 001109 197 NASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLK 276 (1155)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~ 276 (1155)
....+.+ +++.|+ + +..++...++.|..||. +++.......
T Consensus 139 -------------------~~~~~~~-----i~~~~~--g------~l~v~~~~~~~i~~~~~-~g~~~~~~~~------ 179 (299)
T 2z2n_A 139 -------------------KGSYPSF-----ITLGSD--N------ALWFTENQNNAIGRITE-SGDITEFKIP------ 179 (299)
T ss_dssp -------------------TTCCEEE-----EEECTT--S------CEEEEETTTTEEEEECT-TCCEEEEECS------
T ss_pred -------------------CCCCCce-----EEEcCC--C------CEEEEeCCCCEEEEEcC-CCcEEEeeCC------
Confidence 0111223 778776 3 34444445789999998 6766543110
Q ss_pred cccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 277 TEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
. ....+.++++. ++|...++...++.|.+||. ++
T Consensus 180 ~-----------------------~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-~g 213 (299)
T 2z2n_A 180 T-----------------------PASGPVGITKG-NDDALWFVEIIGNKIGRITT-SG 213 (299)
T ss_dssp S-----------------------TTCCEEEEEEC-TTSSEEEEETTTTEEEEECT-TC
T ss_pred C-----------------------CCCcceeEEEC-CCCCEEEEccCCceEEEECC-CC
Confidence 0 12346789998 89997777767889999998 44
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.83 E-value=6.2e-08 Score=112.22 Aligned_cols=177 Identities=12% Similarity=0.028 Sum_probs=120.4
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEccCCce-----------EEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEEC
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIGGDNIE-----------GLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDL 112 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~-----------~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl 112 (1155)
.++.||+++...+||+|+.++ ++||+..... .....+... |.+|+| |+.+|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 589999999999999999985 6679643222 111223445 999999 77888888 8899999999
Q ss_pred CCCceeeeec-CCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccc
Q 001109 113 EARRITSTLP-WESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREK 191 (1155)
Q Consensus 113 ~t~~~~~~l~-~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~ 191 (1155)
.+......+. ....+.++.+.+. .+++++.||.|++|++.... ...
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~--~~~----------------------------- 160 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS--TKQ----------------------------- 160 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC--EEE-----------------------------
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc--ccc-----------------------------
Confidence 8765444443 2355777666543 38889999999998665322 110
Q ss_pred cccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeE--EEEec
Q 001109 192 GKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKV--VLVRG 269 (1155)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~--~~~~~ 269 (1155)
... .|.+++|+|. | +++|..||.+++|+...+.+ .....
T Consensus 161 ------------------------~~~-----~Vs~v~WSpk--G--------~~vg~~dg~i~~~~~~~~~~~~k~~I~ 201 (388)
T 1xip_A 161 ------------------------LAQ-----NVTSFDVTNS--Q--------LAVLLKDRSFQSFAWRNGEMEKQFEFS 201 (388)
T ss_dssp ------------------------EEE-----SEEEEEECSS--E--------EEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred ------------------------ccC-----CceEEEEcCC--c--------eEEEEcCCcEEEEcCCCccccccceec
Confidence 011 3445999997 3 78899999999999887765 32210
Q ss_pred ccccccccccccCCCCCCCCCCcccccc-cccccCCccEEEEEecCCCeEEE
Q 001109 270 SKDLQLKTEIVDDPSKNAGHNLSETVSD-NEQVEKEISSLCWASNDGSVLAV 320 (1155)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~sl~~s~pdG~~las 320 (1155)
. | ..++ ..+|...|.+++|. +++.++++
T Consensus 202 ~------------P----------p~~~~~~~~~~~V~sI~wl-~~~~flv~ 230 (388)
T 1xip_A 202 L------------P----------SELEELPVEEYSPLSVTIL-SPQDFLAV 230 (388)
T ss_dssp C------------C----------HHHHTSCTTTSEEEEEEES-SSSEEEEE
T ss_pred C------------C----------cccccccCCCeeEEEEEEe-cCCeEEEE
Confidence 0 0 0000 00146789999999 88887774
No 205
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.80 E-value=1.5e-07 Score=102.76 Aligned_cols=197 Identities=8% Similarity=-0.015 Sum_probs=129.5
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeee
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTL 121 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l 121 (1155)
..+..++++|+|+++++.. ++.|.+|+..+....... .....+..++|.++|..+++...++.|.+||..+.......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~ 145 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP 145 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec
Confidence 5678899999999766655 889999998765433221 22356899999999876666667889999987655443222
Q ss_pred cC-CCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccce
Q 001109 122 PW-ESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASL 200 (1155)
Q Consensus 122 ~~-~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 200 (1155)
.. ...+.++++++++++.++...++.|++| +........ ...
T Consensus 146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~--~~~~~~~~~----~~~------------------------------- 188 (270)
T 1rwi_B 146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL--EAESNNQVV----LPF------------------------------- 188 (270)
T ss_dssp CCSCCSCCCEEECTTCCEEEEEGGGTEEEEE--CTTTCCEEE----CCC-------------------------------
T ss_pred cccCCCceeEEEeCCCCEEEEECCCCEEEEE--ecCCCceEe----ecc-------------------------------
Confidence 22 2467899999999855555556777665 443221110 000
Q ss_pred eeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccc
Q 001109 201 LFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIV 280 (1155)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~ 280 (1155)
. ......+ +++.|+ + +..++...++.|.+||......... .. .
T Consensus 189 --------~------~~~~p~~-----i~~d~~--g------~l~v~~~~~~~v~~~~~~~~~~~~~-~~-----~---- 231 (270)
T 1rwi_B 189 --------T------DITAPWG-----IAVDEA--G------TVYVTEHNTNQVVKLLAGSTTSTVL-PF-----T---- 231 (270)
T ss_dssp --------S------SCCSEEE-----EEECTT--C------CEEEEETTTSCEEEECTTCSCCEEC-CC-----C----
T ss_pred --------c------CCCCceE-----EEECCC--C------CEEEEECCCCcEEEEcCCCCcceee-cc-----C----
Confidence 0 0011223 888876 3 3455555678999999865543321 00 0
Q ss_pred cCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCC
Q 001109 281 DDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~ 335 (1155)
+...+.++++. ++|+.+++...++.|+++++...
T Consensus 232 --------------------~~~~p~~i~~~-~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 232 --------------------GLNTPLAVAVD-SDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp --------------------SCSCEEEEEEC-TTCCEEEEEGGGTEEEEECCCGG
T ss_pred --------------------CCCCceeEEEC-CCCCEEEEECCCCEEEEEcCCCc
Confidence 12457899998 99998888899999999998764
No 206
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.80 E-value=2.4e-07 Score=102.74 Aligned_cols=160 Identities=8% Similarity=-0.014 Sum_probs=113.3
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeC-CCeEEEEEeccC
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSS-SGLVWLYNLIKS 624 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~-dG~V~lwd~~~~ 624 (1155)
.+.|+|++|+ +.++.|+.||. ++.+ +..++. ++...+.++.+.|||++|++.+. ++.|..++...
T Consensus 43 ~~~pdG~ilv--s~~~~V~~~d~-~G~~--~W~~~~--------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G- 108 (276)
T 3no2_A 43 AATKAGEILF--SYSKGAKMITR-DGRE--LWNIAA--------PAGCEMQTARILPDGNALVAWCGHPSTILEVNMKG- 108 (276)
T ss_dssp EECTTSCEEE--ECBSEEEEECT-TSCE--EEEEEC--------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS-
T ss_pred EECCCCCEEE--eCCCCEEEECC-CCCE--EEEEcC--------CCCccccccEECCCCCEEEEecCCCCEEEEEeCCC-
Confidence 5678899998 45788999999 5652 233331 12236889999999999999887 66666665432
Q ss_pred ccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCC
Q 001109 625 SNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSN 704 (1155)
Q Consensus 625 ~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~ 704 (1155)
+. ++.+....+ ...+......+++.++|++|++.+.++.|..||.+ ++.+++... .
T Consensus 109 k~-------------l~~~~~~~~------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~----~ 164 (276)
T 3no2_A 109 EV-------------LSKTEFETG------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL----S 164 (276)
T ss_dssp CE-------------EEEEEECCS------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC----S
T ss_pred CE-------------EEEEeccCC------CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC----C
Confidence 11 111110000 01122234556889999999999999999999998 888887653 2
Q ss_pred CCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeee
Q 001109 705 SPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 705 ~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~ 765 (1155)
....++.+. ++|++|++++.+++|..+|..||+.++...
T Consensus 165 ~~~~~~~~~----------------------~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 165 GTPFSSAFL----------------------DNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp SCCCEEEEC----------------------TTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCccceeEc----------------------CCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 344555665 789999999999999999999999999884
No 207
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.79 E-value=5.3e-07 Score=101.86 Aligned_cols=116 Identities=9% Similarity=0.069 Sum_probs=81.6
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcC----CeEEEEccCCceEE--EE-cCCCCCEEEEEEEcCCcEEEEEec------CCe
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQD----GRIKVIGGDNIEGL--LV-SPKQLAFKHLEFLQNQGFLVSISS------GNE 106 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~D----G~I~vw~~~~~~~~--~~-~~~~~~V~~l~Fs~dg~~LvS~s~------Dg~ 106 (1155)
.+...+.+++++|+|++++++..+ +.|.+|+..+.... .. ......+..+.|+|+|..+++... .+.
T Consensus 84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence 455779999999999988887776 68999998765543 21 123457899999999877776553 245
Q ss_pred EEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEe-CCCcEEEEEecC
Q 001109 107 IQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGD-EYGMVYVLKYDT 155 (1155)
Q Consensus 107 I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~ 155 (1155)
|..||.++++..........+..++|+|++++|+++. .++.|++|+++.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 164 VYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp EEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 6666666655443222234578999999999777664 567787776643
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.76 E-value=1e-05 Score=93.69 Aligned_cols=168 Identities=7% Similarity=-0.057 Sum_probs=104.2
Q ss_pred cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccccee
Q 001109 552 RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLN 631 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~ 631 (1155)
+.+++.+.||++.+||. .+... ...... .+. .+...-.....|.+++..++..+..|.|.+.|+......
T Consensus 178 ~~~~~~~~dg~~~~vd~-~g~~~--~~~~~~--~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~---- 247 (373)
T 2mad_H 178 STFYLLCAQGGLAKTDH-AGGAA--GAGLVG--AML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT---- 247 (373)
T ss_pred ceEEEEcCCCCEEEEEC-CCcEE--EEEecc--ccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce----
Confidence 35666778899999998 66522 111100 000 011111234567888776665567889999998653211
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEecCCccEEEEeccCC
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFE----------CSQVAMLDISTFSVLFITDSLS 701 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~----------Dg~V~lWDi~~~~~l~~~~~~~ 701 (1155)
.+ ..+....... ............++|+||+++|.++.. ++.|.++|..+.+++.+...
T Consensus 248 v~-------~~~~~~~~~~--~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-- 316 (373)
T 2mad_H 248 NK-------APIDALSGGR--KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-- 316 (373)
T ss_pred Ee-------eeeeecCCcc--cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--
Confidence 00 0000000000 000112334556889999998777653 35799999999999877643
Q ss_pred CCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCc-EEEEEe-CCceEEEEECCCCceeeee
Q 001109 702 NSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKE-TLFFMT-KDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 702 ~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~-~L~s~s-~Dg~I~vwd~~tG~~l~~~ 764 (1155)
.....+++|+ |||+ +|+++. .+++|.|||..|++.+...
T Consensus 317 --g~~p~~i~~s----------------------~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 317 --GHDVDAISVA----------------------QDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred --CCCcCeEEEC----------------------CCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 2357899998 8999 788877 5999999999999999883
No 209
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.75 E-value=1.5e-05 Score=87.67 Aligned_cols=152 Identities=5% Similarity=-0.099 Sum_probs=99.0
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
++.++++++++...++.|..||. .+.+... .+. .+...+.+++++++|.+.++...++.|.+|+. .+.
T Consensus 147 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~---------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 147 TLGSDNALWFTENQNNAIGRITE-SGDITEF-KIP---------TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECS---------STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred EEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe-eCC---------CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 55677888888888899999998 5553221 111 22236889999999997777666889999987 432
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
.. ...+..+...+.+|+++++|++.++...++.|.+||.. +... ... +..+..
T Consensus 215 ~~------------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~-~~~-~~~~~~ 267 (299)
T 2z2n_A 215 IT------------------------EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIE-EYP-IQIKSA 267 (299)
T ss_dssp EE------------------------EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEE-EEE-CSSSSC
T ss_pred EE------------------------EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-CceE-EEe-CCCCCC
Confidence 10 01112345678999999999977776678899999984 4332 221 223445
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCce
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~ 760 (1155)
.+.++++ . +|++.++.+ .+.|..+|..++++
T Consensus 268 ~~~~i~~-~----------------------~g~l~v~~~-~~~l~~~~~~~~~~ 298 (299)
T 2z2n_A 268 EPHGICF-D----------------------GETIWFAME-CDKIGKLTLIKDNM 298 (299)
T ss_dssp CEEEEEE-C----------------------SSCEEEEET-TTEEEEEEEC----
T ss_pred ccceEEe-c----------------------CCCEEEEec-CCcEEEEEcCcccC
Confidence 6778877 2 355555444 67788888877643
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.74 E-value=7.7e-07 Score=112.91 Aligned_cols=154 Identities=10% Similarity=0.011 Sum_probs=98.5
Q ss_pred ccCCcCcEEEEEECCC-----cEEEEeCCCC--C-eeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC----
Q 001109 546 EDYLVERLYIAGYRDG-----STRIWDATYP--T-LSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS---- 613 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~Dg-----tVrlWD~~~~--~-l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d---- 613 (1155)
.++|+|+.|+..+.++ .|++||+.++ . ...+. .+...+... ++|+|+.|+..+.+
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~------------~~~~~~~~~-~~~dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI------------PDLKAQWDF-VDGVGDQLWFVSGDGAPL 340 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE------------CSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec------------CCCCceEEE-EeccCCEEEEEECCCCCC
Confidence 5678888777766544 7999999776 3 33221 112234444 35999999888764
Q ss_pred CeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecC-Ccc
Q 001109 614 GLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDIS-TFS 692 (1155)
Q Consensus 614 G~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~-~~~ 692 (1155)
+.|.+|++.+.. . .+...+..+...+..++++ ++.++++...||..+||.+. ++.
T Consensus 341 ~~l~~~d~~~~~-~----------------------~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 341 KKIVRVDLSGST-P----------------------RFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp CEEEEEECSSSS-C----------------------EEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred CEEEEEeCCCCc-c----------------------ccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 458888876531 0 1112233444557778887 66788899999988888664 344
Q ss_pred EEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEE----EEeCCceEEEEECCCCce
Q 001109 693 VLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLF----FMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 693 ~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~----s~s~Dg~I~vwd~~tG~~ 760 (1155)
.+..... ...+.|..++++ ||++.|+ +.+..++|.+||+.+|+.
T Consensus 397 ~~~~l~~--~~~~~v~~~~~s----------------------~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 397 PAGAVSL--PGIGSASGLSGR----------------------PGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEECBC--SSSCEEEEEECC----------------------BTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred ceeeccC--CCCeEEEEeecC----------------------CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4443321 134567778887 6676666 344568999999998873
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.74 E-value=4.9e-08 Score=113.13 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=108.7
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCC---------eeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeE
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPT---------LSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLV 616 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~---------l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V 616 (1155)
++++..+++++|+.|+ +++|++.... +.+... ..+.. |++|+| |+..|+++ .+|.|
T Consensus 44 ais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~----------~~lp~-V~~l~f--d~~~L~v~-~~~~l 108 (388)
T 1xip_A 44 DISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE----------KEIPD-VIFVCF--HGDQVLVS-TRNAL 108 (388)
T ss_dssp EEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE----------EECTT-EEEEEE--ETTEEEEE-ESSEE
T ss_pred EEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE----------eeCCC-eeEEEE--CCCEEEEE-cCCcE
Confidence 7889999999999885 5569865332 111011 12445 999999 99999999 88999
Q ss_pred EEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEE
Q 001109 617 WLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFI 696 (1155)
Q Consensus 617 ~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~ 696 (1155)
++||+...... ..+..|..+|.++.+.+.. +|+++.||.|.+||+.++....
T Consensus 109 ~v~dv~sl~~~-------------------------~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 109 YSLDLEELSEF-------------------------RTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp EEEESSSTTCE-------------------------EEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-
T ss_pred EEEEchhhhcc-------------------------CccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-
Confidence 99999764311 1234567778888877653 9999999999999999877642
Q ss_pred eccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCce
Q 001109 697 TDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 697 ~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~ 760 (1155)
+...|.+++|| |+| ++.|..||++++|+..++++
T Consensus 161 ------~~~~Vs~v~WS----------------------pkG--~~vg~~dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 161 ------LAQNVTSFDVT----------------------NSQ--LAVLLKDRSFQSFAWRNGEM 194 (388)
T ss_dssp ------EEESEEEEEEC----------------------SSE--EEEEETTSCEEEEEEETTEE
T ss_pred ------ccCCceEEEEc----------------------CCc--eEEEEcCCcEEEEcCCCccc
Confidence 34579999999 778 78899999999999988775
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.73 E-value=2e-06 Score=99.35 Aligned_cols=168 Identities=16% Similarity=0.121 Sum_probs=103.3
Q ss_pred cEEEEEECCCcEEEEeCCC-CCeeeeeeeCCCcCccccCCCCCCeE-EEEEe-cCCCeEEEEeCCCeEEEEEeccCcccc
Q 001109 552 RLYIAGYRDGSTRIWDATY-PTLSLIHVFGSELPGIRTATESESVS-ALEFC-SVTLNLAIGSSSGLVWLYNLIKSSNEE 628 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~-~~l~~l~~l~~~~~~i~~~gh~~~V~-~lafs-pdg~~Lasgs~dG~V~lwd~~~~~~~~ 628 (1155)
+.+++.+.||++-+.+... +... .... .+.. ....++. ..+|. ++|+++. .+.+|.|.+.|+.......
T Consensus 190 ~~~~~~~~DG~~~~v~~~~~g~v~--~~~~-~~~~----~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v 261 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFGTEGTPE--ITHT-EVFH----PEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF 261 (386)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCE--EEEC-CCCS----CTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE
T ss_pred ceeEEECCCCCEEEEECCCCCeEE--Eeec-ceec----cccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee
Confidence 3556677788777777765 4421 1111 1111 0111222 34675 6776544 5668999999987653210
Q ss_pred ceeeeccCCceEEEecC---CCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEecCCccEEE
Q 001109 629 TLNLVTETGKEVHILPG---GDGPQCKALFSVLNSPICNLKFSNFGARLAVGFE----------CSQVAMLDISTFSVLF 695 (1155)
Q Consensus 629 ~~~~v~~~~~~~~~~~~---~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~----------Dg~V~lWDi~~~~~l~ 695 (1155)
+. .+.+... ..| ...+.+..++++|++++|.+... .+.|.++|+.+.+++.
T Consensus 262 ----~~----~~~~~~~~~~~~g--------~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~ 325 (386)
T 3sjl_D 262 ----LP----AVEALTEAERADG--------WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 325 (386)
T ss_dssp ----CC----CEESSCHHHHHTT--------EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred ----ec----ceecccccccccc--------ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence 00 0000000 000 01233345788999998888653 2579999999999998
Q ss_pred EeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCc-EEEEEe-CCceEEEEECCCCceeeeeecccC
Q 001109 696 ITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKE-TLFFMT-KDAHIVVCDSTTGHILFSRSIHHQ 769 (1155)
Q Consensus 696 ~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~-~L~s~s-~Dg~I~vwd~~tG~~l~~~~~~~~ 769 (1155)
+..+ ..++++|+|+ ||++ +|+++. .+++|.|+|..||+.+.+.+.-..
T Consensus 326 ~i~v----g~~~~~lavs----------------------~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~ 375 (386)
T 3sjl_D 326 KFEM----GHEIDSINVS----------------------QDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 375 (386)
T ss_dssp EEEE----EEEECEEEEC----------------------SSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred EEEC----CCCcceEEEC----------------------CCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence 7654 2478899998 8886 677754 599999999999999998854433
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.72 E-value=2e-06 Score=99.68 Aligned_cols=103 Identities=12% Similarity=-0.006 Sum_probs=73.6
Q ss_pred EEEEcCCCCEEEEEE----------cCCeEEEEccCCceEEEEcCCC--------CCEEEEEEEcCCcEEEEEec--CCe
Q 001109 47 ILAFDHVQSLLAIGT----------QDGRIKVIGGDNIEGLLVSPKQ--------LAFKHLEFLQNQGFLVSISS--GNE 106 (1155)
Q Consensus 47 ~lafsp~g~lLAsgs----------~DG~I~vw~~~~~~~~~~~~~~--------~~V~~l~Fs~dg~~LvS~s~--Dg~ 106 (1155)
.++|||||++|.++. .++.|.+||..+.+.+...+-. ..-..+.|+|||++|+.++. +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999886 3678999998776555432111 22457899999999998874 588
Q ss_pred EEEEECCCCceeee-ecCCCceeEEEEecCCC-EEEEEeCCCcEEEEEe
Q 001109 107 IQLWDLEARRITST-LPWESNITAFSVIFGTS-YMYIGDEYGMVYVLKY 153 (1155)
Q Consensus 107 I~vWDl~t~~~~~~-l~~~~~Vtsva~spd~~-~l~~G~~dG~V~vw~~ 153 (1155)
|.++| ++++.+.+ +...+. +.+.|++. .+++.+.||.+.+++.
T Consensus 150 v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC
Confidence 99999 99999888 765443 44555554 3344556777655544
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.72 E-value=1.5e-06 Score=97.18 Aligned_cols=231 Identities=8% Similarity=0.047 Sum_probs=141.0
Q ss_pred CceEEEEcCC-CCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeec
Q 001109 44 TASILAFDHV-QSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLP 122 (1155)
Q Consensus 44 ~vs~lafsp~-g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~ 122 (1155)
-....+|+|+ +.++.+...+++|..|+..+.+... ......+.+++|+++|+++++ . ++.|.+||.++++......
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEe
Confidence 3457889995 5677788888999999987654432 223457999999999885554 3 6789999999886543222
Q ss_pred C-----CCceeEEEEecCCCEEEEEeCC---------CcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccc
Q 001109 123 W-----ESNITAFSVIFGTSYMYIGDEY---------GMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQ 188 (1155)
Q Consensus 123 ~-----~~~Vtsva~spd~~~l~~G~~d---------G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~ 188 (1155)
. ...++.++++|+|++.++.... ....||.++... ++.. +.
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~----~~-------------------- 145 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKK----YF-------------------- 145 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEE----EE--------------------
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEE----Ee--------------------
Confidence 1 1457899999999955543221 234566666532 1110 00
Q ss_pred ccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEE-EEEcCCeEEEEEc--cCCeEE
Q 001109 189 REKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLL-LVYANGLIILWDV--SEDKVV 265 (1155)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~ll-sg~~dG~I~lWd~--~~~~~~ 265 (1155)
. ......+ ++|+|+. +.|+ +.+.++.|.+||+ .++.+.
T Consensus 146 ---~-----------------------~~~~png-----i~~spdg--------~~lyv~~~~~~~i~~~~~d~~~G~~~ 186 (297)
T 3g4e_A 146 ---D-----------------------QVDISNG-----LDWSLDH--------KIFYYIDSLSYSVDAFDYDLQTGQIS 186 (297)
T ss_dssp ---E-----------------------EESBEEE-----EEECTTS--------CEEEEEEGGGTEEEEEEECTTTCCEE
T ss_pred ---e-----------------------ccccccc-----eEEcCCC--------CEEEEecCCCCcEEEEeccCCCCccc
Confidence 0 0011123 8899974 3454 4455789999987 455542
Q ss_pred EEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCC
Q 001109 266 LVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSEN 345 (1155)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~ 345 (1155)
..+...+ +. .+...+..+++. ++|.+.++...++.|..||..++.....
T Consensus 187 ~~~~~~~--~~-----------------------~~~~~p~g~~~d-~~G~lwva~~~~~~v~~~d~~tG~~~~~----- 235 (297)
T 3g4e_A 187 NRRSVYK--LE-----------------------KEEQIPDGMCID-AEGKLWVACYNGGRVIRLDPVTGKRLQT----- 235 (297)
T ss_dssp EEEEEEE--CC-----------------------GGGCEEEEEEEB-TTSCEEEEEETTTEEEEECTTTCCEEEE-----
T ss_pred CcEEEEE--CC-----------------------CCCCCCCeeEEC-CCCCEEEEEcCCCEEEEEcCCCceEEEE-----
Confidence 2110000 00 013456788998 8999888888888999999986643221
Q ss_pred CCCCcccccccCCCCCccEEEEEecccCCCCCCCceEEEecCC
Q 001109 346 SSTDFGKLQLSSGNRRLPVITLHWSAERSRNDCRGQLFVFGGD 388 (1155)
Q Consensus 346 ~~~~i~kl~l~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~ 388 (1155)
+. .+...+..++|.. ++...||++...
T Consensus 236 -------i~----~p~~~~t~~~f~g-----~d~~~L~vt~~~ 262 (297)
T 3g4e_A 236 -------VK----LPVDKTTSCCFGG-----KNYSEMYVTCAR 262 (297)
T ss_dssp -------EE----CSSSBEEEEEEES-----GGGCEEEEEEBC
T ss_pred -------EE----CCCCCceEEEEeC-----CCCCEEEEEcCC
Confidence 11 1123466777752 245567777654
No 215
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.70 E-value=7.2e-06 Score=94.62 Aligned_cols=110 Identities=13% Similarity=-0.005 Sum_probs=84.5
Q ss_pred EEEcCCCCEEEEEEc-----CCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEe----------cCCeEEEEE
Q 001109 48 LAFDHVQSLLAIGTQ-----DGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSIS----------SGNEIQLWD 111 (1155)
Q Consensus 48 lafsp~g~lLAsgs~-----DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s----------~Dg~I~vWD 111 (1155)
.+..|+++++.+... +++|.++|..+.+.+...+ ...+ .+.|+|||++|+.++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 456899998888765 6899999999888776543 2334 499999999988776 367899999
Q ss_pred CCCCceeeeecCC--------CceeEEEEecCCCEEEEEeC--CCcEEEEEecCCCceee
Q 001109 112 LEARRITSTLPWE--------SNITAFSVIFGTSYMYIGDE--YGMVYVLKYDTEEGKLI 161 (1155)
Q Consensus 112 l~t~~~~~~l~~~--------~~Vtsva~spd~~~l~~G~~--dG~V~vw~~d~~~~~l~ 161 (1155)
..+.+.+.++... .....++|+|||++||++.. ++.|.|+ |...+++.
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVI--D~~t~~vv 173 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV--DLEGKAFK 173 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEE--ETTTTEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEE--ECCCCcEE
Confidence 9999998887532 24667999999999999874 5777665 66555543
No 216
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.67 E-value=0.0039 Score=79.40 Aligned_cols=492 Identities=12% Similarity=0.076 Sum_probs=244.2
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCC-CC---CEEEEEEEcCCcEEEEEecCCeEEEEECCCCcee
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPK-QL---AFKHLEFLQNQGFLVSISSGNEIQLWDLEARRIT 118 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~-~~---~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~ 118 (1155)
..|.+|..+++|.+. +|+.+| +..|+............ .. .|.++...++|...+. +. +.|.+||..+++..
T Consensus 88 n~I~~i~~d~~g~lW-igT~~G-l~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~-t~-~gl~~~~~~~~~~~ 163 (795)
T 4a2l_A 88 DISRIVKTDSQGRVW-IGTRDG-LSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLIS-TP-EGLIMFDIKESKFI 163 (795)
T ss_dssp SCEEEEEECTTSCEE-EEESSC-EEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEE-ET-TEEEEEETTTTEEE
T ss_pred cceeEEEECCCCCEE-EEeCCc-hheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEE-EC-CceEEEECCCCEEE
Confidence 458999999999766 466666 78898765544322111 11 2888888888665554 43 56899998876543
Q ss_pred eeecCC--Cc-eeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccc
Q 001109 119 STLPWE--SN-ITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAA 195 (1155)
Q Consensus 119 ~~l~~~--~~-Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 195 (1155)
...... .. |.++..++++.+. +|+.++-+.. ++...+++.. + .. .
T Consensus 164 ~~~~~~~~~~~i~~i~~d~~g~lw-igt~~~Gl~~--~~~~~~~~~~--~--~~----------------------~--- 211 (795)
T 4a2l_A 164 DDSFSTAMHKTIASTLYRQGDQIY-IGTSTDGLYT--YSITQKTFEK--V--IP----------------------I--- 211 (795)
T ss_dssp CSSSCHHHHTCCEEEEEEETTEEE-EEESSSCEEE--EETTTCCEEE--C--C---------------------------
T ss_pred eccCCCCCCcceEEEEECCCCCEE-EEECCCCEEE--EeCCCCeEEE--e--cC----------------------C---
Confidence 221111 23 8889888888644 4676533544 4544332210 0 00 0
Q ss_pred cccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccc
Q 001109 196 FNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQL 275 (1155)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~ 275 (1155)
. .... |.++...++ ..|.+|+.++-+.+||..+++.......
T Consensus 212 -------------~------~~~~-----i~~i~~d~~---------g~lwigt~~~Gl~~~~~~~~~~~~~~~~----- 253 (795)
T 4a2l_A 212 -------------L------GTKQ-----IQAILQQSP---------TRIWVATEGAGLFLINPKTKEIKNYLHS----- 253 (795)
T ss_dssp ---------------------CCC-----EEEEEEEET---------TEEEEEEBSSCEEEEETTTTEEEEECCC-----
T ss_pred -------------C------CCCe-----eEEEEEcCC---------CCEEEEECCCCeEEEeCCCCeEEEeecC-----
Confidence 0 0111 222555543 3577777665578899888776543110
Q ss_pred ccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccc
Q 001109 276 KTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQL 355 (1155)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l 355 (1155)
. ... ..+ ....|.+++.. ++|...+ |..+ .|.+||..+............
T Consensus 254 -------~-~~~------~~l----~~~~i~~i~~d-~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~--------- 303 (795)
T 4a2l_A 254 -------P-SNP------KSI----SSNYIRSLAMD-SQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVE--------- 303 (795)
T ss_dssp -------T-TCT------TSC----SCSBEEEEEEC-TTSCEEE-EESS-CEEEEETTTTEEEEECCCTTS---------
T ss_pred -------C-CCc------ccc----CCCeEEEEEEc-CCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCC---------
Confidence 0 000 000 14568899887 7887554 5555 588999766532110000000
Q ss_pred cCCCCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeec-CCCceeEEEEecCCC
Q 001109 356 SSGNRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLE-RKGSFVDMVLLPNGM 434 (1155)
Q Consensus 356 ~~~~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~-~~~~v~d~~~~~~~~ 434 (1155)
........|..+.. +..+.+.+.... ..+..+...... ...+.... ..-. ....+..+..-++
T Consensus 304 ~~~l~~~~i~~i~~-------D~~g~lWigt~~-----~Gl~~~~~~~~~-~~~~~~~~-~~~~l~~~~V~~i~~d~~-- 367 (795)
T 4a2l_A 304 NGSLSQRSVRSIFM-------DSQGGMWLGTYF-----GGLNYYHPIRNR-FKNIRNIP-YKNSLSDNVVSCIVEDKD-- 367 (795)
T ss_dssp TTSCSSSCEEEEEE-------CTTSCEEEEESS-----SCEEEECGGGGS-SEEECCCT-TSSSCSCSSEEEEEECTT--
T ss_pred CCCCCCCcEEEEEE-------eCCcCEEEEECC-----CCeEEeCCCccc-ceEEcCCC-CCCCCCCCeeEEEEECCC--
Confidence 00112234666632 245666665432 234444321110 00000000 0000 0112333322211
Q ss_pred CCCCceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhc
Q 001109 435 NESHGTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAK 514 (1155)
Q Consensus 435 ~~~~~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~ 514 (1155)
..+++++.++-|..||.... .+ . .+......
T Consensus 368 -----g~lWiGt~~~Gl~~~~~~~~----------------~~-----------~--~~~~~~~~--------------- 398 (795)
T 4a2l_A 368 -----KNLWIGTNDGGLNLYNPITQ----------------RF-----------T--SYTLQEDE--------------- 398 (795)
T ss_dssp -----SCEEEEESSSCEEEECTTTC----------------CE-----------E--EECCC------------------
T ss_pred -----CCEEEEECCCCeEEEcCCCC----------------cE-----------E--EEecCCCC---------------
Confidence 14666776666777764310 00 0 00000000
Q ss_pred cccCCCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCC
Q 001109 515 VRASHTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESES 594 (1155)
Q Consensus 515 ~~~~~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~ 594 (1155)
+ . -.+.. ..+.++ ...+++++|..|..++-+..||..++......... .. -+...
T Consensus 399 ------~---~------~~l~~--~~v~~i-~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~---~~----l~~~~ 453 (795)
T 4a2l_A 399 ------S---A------RGIGS--NNIKAV-YVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN---SQ----LVNEN 453 (795)
T ss_dssp ------------------CCSC--SCEEEE-EEETTTTEEEEEETTTEEEEEETTTCCEEEECTTT---SC----CSCSC
T ss_pred ------c---c------cCCCC--ccEEEE-EEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC---CC----cCCCe
Confidence 0 0 00000 001112 22345663555677777999998877643221100 00 12347
Q ss_pred eEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEE
Q 001109 595 VSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARL 674 (1155)
Q Consensus 595 V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~L 674 (1155)
|.++..+++|.+.+ |+.+| +.+|+..++... ........ -..+...|.++...++|+..
T Consensus 454 v~~i~~d~~g~lwi-gt~~G-l~~~~~~~~~~~--------------~~~~~~~~-----~~~~~~~i~~i~~d~~g~lW 512 (795)
T 4a2l_A 454 VYAILPDGEGNLWL-GTLSA-LVRFNPEQRSFT--------------TIEKEKDG-----TPVVSKQITTLFRDSHKRLW 512 (795)
T ss_dssp EEEEEECSSSCEEE-EESSC-EEEEETTTTEEE--------------ECCBCTTC-----CBCCCCCEEEEEECTTCCEE
T ss_pred eEEEEECCCCCEEE-EecCc-eeEEeCCCCeEE--------------Eccccccc-----cccCCceEEEEEECCCCCEE
Confidence 99999999887544 55554 777886653210 00000000 01134679999999999865
Q ss_pred EEEeCCCcEEEEecCCccEEEEec-cC-CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEE
Q 001109 675 AVGFECSQVAMLDISTFSVLFITD-SL-SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVV 752 (1155)
Q Consensus 675 AsGs~Dg~V~lWDi~~~~~l~~~~-~~-~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~v 752 (1155)
+.. .+| |..||..+....+... .. ......|.++..+ ++|++ ..|+.. -|..
T Consensus 513 igt-~~G-l~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d----------------------~~g~l-WigT~~-Gl~~ 566 (795)
T 4a2l_A 513 IGG-EEG-LSVFKQEGLDIQKASILPVSNVTKLFTNCIYEA----------------------SNGII-WVGTRE-GFYC 566 (795)
T ss_dssp EEE-SSC-EEEEEEETTEEEECCCSCSCGGGGSCEEEEEEC----------------------TTSCE-EEEESS-CEEE
T ss_pred EEe-CCc-eEEEeCCCCeEEEecCCCCCCCCCCeeEEEEEC----------------------CCCCE-EEEeCC-Ccee
Confidence 544 445 8889988766511100 00 0133567888776 56764 445555 6889
Q ss_pred EECCCCceeeeeecccCCCceEE
Q 001109 753 CDSTTGHILFSRSIHHQESNAIY 775 (1155)
Q Consensus 753 wd~~tG~~l~~~~~~~~~~~al~ 775 (1155)
||..+++...-......+...+.
T Consensus 567 ~d~~~~~~~~~~~~~gl~~~~i~ 589 (795)
T 4a2l_A 567 FNEKDKQIKRYNTTNGLPNNVVY 589 (795)
T ss_dssp EETTTTEEEEECGGGTCSCSCEE
T ss_pred ECCCCCcEEEeCCCCCCchhheE
Confidence 99988765433221222555443
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.66 E-value=8.2e-07 Score=104.37 Aligned_cols=217 Identities=12% Similarity=0.048 Sum_probs=133.4
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCC--eEEEEECCCCceeee
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGN--EIQLWDLEARRITST 120 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg--~I~vWDl~t~~~~~~ 120 (1155)
..+..|+|+|+|+++++...+++|++|+..+.............. ++|+++++.|++++.++ .|.+||..++.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 357889999999999888888999999988665543332222233 99999999999988765 899999887655444
Q ss_pred e----c-CCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccc
Q 001109 121 L----P-WESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAA 195 (1155)
Q Consensus 121 l----~-~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 195 (1155)
+ . ....+.+++++|++..|++...++.|+.|+.+. +.... +... +
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~--~~~~~--~~~~-----------------------~--- 259 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT--QEVTL--IKQL-----------------------E--- 259 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT--CCEEE--EEEC-----------------------C---
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC--CCEEE--Eecc-----------------------c---
Confidence 4 2 235678999999777777777778676554433 22110 0000 0
Q ss_pred cccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEeccccccc
Q 001109 196 FNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQL 275 (1155)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~ 275 (1155)
..+.. ...+..+ ++++|++ + .++++-..++.|+.|+.... .....+..
T Consensus 260 -------------~~g~~--~~~P~~~-----ia~~p~~-g------~lyv~d~~~~~I~~~~~~g~-~~~~~g~~---- 307 (409)
T 3hrp_A 260 -------------LSGSL--GTNPGPY-----LIYYFVD-S------NFYMSDQNLSSVYKITPDGE-CEWFCGSA---- 307 (409)
T ss_dssp -------------CCSCC--CCSSCCE-----EEEETTT-T------EEEEEETTTTEEEEECTTCC-EEEEEECT----
T ss_pred -------------ccCCC--CCCcccc-----EEEeCCC-C------EEEEEeCCCCEEEEEecCCC-EEEEEeCC----
Confidence 00000 0001114 8999964 2 34455556789999997644 33222210
Q ss_pred ccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE-cCCcEEEEEcCCC
Q 001109 276 KTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY-VDGDILLWNLRAA 335 (1155)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~-~DG~I~lWd~~s~ 335 (1155)
... +. ..+ . .....-.....++|. ++|.++++-+ .++.|+.|++.++
T Consensus 308 --~~~-g~--~dg------~-~~~~~~~~P~gia~d-~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 308 --TQK-TV--QDG------L-REEALFAQPNGMTVD-EDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp --TCC-SC--BCE------E-GGGCBCSSEEEEEEC-TTCCEEEEETTTTCEEEEEETTTT
T ss_pred --CCC-Cc--CCC------c-ccccEeCCCeEEEEe-CCCCEEEEeCCCCCEEEEEECCCC
Confidence 000 00 000 0 000012346789999 9999777777 7899999997655
No 218
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.66 E-value=3.8e-07 Score=103.67 Aligned_cols=196 Identities=14% Similarity=0.026 Sum_probs=128.4
Q ss_pred CCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCC------CEEEEEEEcCCcEEEEEe--cCCeEEEEECC
Q 001109 42 PSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQL------AFKHLEFLQNQGFLVSIS--SGNEIQLWDLE 113 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~------~V~~l~Fs~dg~~LvS~s--~Dg~I~vWDl~ 113 (1155)
...+..++|+|+|++.++...++.|.+||..+.+.....+... ....+++ . +++|+.++ .+++|.+||++
T Consensus 83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETT
T ss_pred CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECC
Confidence 3678899999999665555478999999998877654332222 4556777 3 45566555 48999999999
Q ss_pred CCceeeeecCCCceeEEEEecCCCEEEEEeCC----------CcEEEEEecCCCceeeccceeccCCceeeeceeEeeEe
Q 001109 114 ARRITSTLPWESNITAFSVIFGTSYMYIGDEY----------GMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFC 183 (1155)
Q Consensus 114 t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~d----------G~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~ 183 (1155)
+++.+.++........++++|+|+++++...+ +.|++ +|...+++.. .+
T Consensus 161 t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~--id~~t~~v~~---~~---------------- 219 (328)
T 3dsm_A 161 TDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYR--IDAETFTVEK---QF---------------- 219 (328)
T ss_dssp TTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEE--EETTTTEEEE---EE----------------
T ss_pred CCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEE--EECCCCeEEE---EE----------------
Confidence 99998888766667889999999966665443 55654 4555444320 00
Q ss_pred cccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCe
Q 001109 184 PNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDK 263 (1155)
Q Consensus 184 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~ 263 (1155)
.++. .....+ ++++|++ ++|+++.. .|.+||..+++
T Consensus 220 --------------------~~~~---------g~~p~~-----la~~~d~--------~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 220 --------------------KFKL---------GDWPSE-----VQLNGTR--------DTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp --------------------ECCT---------TCCCEE-----EEECTTS--------CEEEEESS--SEEEEETTCSS
T ss_pred --------------------ecCC---------CCCcee-----EEEecCC--------CEEEEEcc--EEEEEECCCCc
Confidence 0000 011233 8999974 45666544 88999998877
Q ss_pred EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEec-CCCeEEEE----EcCCcEEEEEcC
Q 001109 264 VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASN-DGSVLAVG----YVDGDILLWNLR 333 (1155)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~p-dG~~lasg----~~DG~I~lWd~~ 333 (1155)
+... .. +. ........++++ | +|...++. ..+|.|.+||..
T Consensus 256 ~~~~-~~----~~-----------------------~~~~~p~gi~vd-p~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 256 VPVR-PF----LE-----------------------FRDTKYYGLTVN-PNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CCSS-CS----BC-----------------------CCSSCEEEEEEC-TTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred eeee-ee----ec-----------------------CCCCceEEEEEc-CCCCeEEEEcccccccCCEEEEECCC
Confidence 5311 00 00 002456789998 8 55555555 578999999987
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.65 E-value=2.7e-06 Score=99.77 Aligned_cols=136 Identities=12% Similarity=0.083 Sum_probs=91.0
Q ss_pred EEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEE
Q 001109 597 ALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAV 676 (1155)
Q Consensus 597 ~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAs 676 (1155)
.+.|.+++..++..+..|.|.+.|+...... ++. .+.+.... .... .........++|+|||++|.+
T Consensus 269 ~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~----v~~-----~~~~~~~~-~i~~---g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 269 HPAFSLRSGRLVWPTYTGKIFQADLTAEGAT----FRA-----PIEALTEA-ERAD---DWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCEECTTTCEEEEEBTTSEEEEEEECSSCEE----ECC-----CEESSCTT-TGGG---TEEECSSSCEEEEGGGTEEEE
T ss_pred EeeecCCCCEEEEEeCCCcEEEEeccCCceE----Eee-----eeeecccc-cccc---ccccCCceeeEEcCCCCEEEE
Confidence 4578999998888888899999998654311 000 00000000 0000 001112224689999997777
Q ss_pred EeC----------CCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCc-EEEEEe
Q 001109 677 GFE----------CSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKE-TLFFMT 745 (1155)
Q Consensus 677 Gs~----------Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~-~L~s~s 745 (1155)
... ++.|.++|..+.+++.+..+ .....+++|+ |||+ +|+++.
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----g~~P~gia~s----------------------pDg~~~lyv~n 389 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIEL----GHEIDSINVS----------------------QDAEPLLYALS 389 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEEC----------------------CSSSCEEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEEC----CCCcCeEEEc----------------------cCCCEEEEEEc
Confidence 642 35799999999999887654 2247889998 8998 888888
Q ss_pred -CCceEEEEECCCCceeeee-ecccCCC
Q 001109 746 -KDAHIVVCDSTTGHILFSR-SIHHQES 771 (1155)
Q Consensus 746 -~Dg~I~vwd~~tG~~l~~~-~~~~~~~ 771 (1155)
.+++|.|+|..|++.+.+. ++-..|.
T Consensus 390 ~~s~~VsVID~~t~kvv~tI~~vG~~P~ 417 (426)
T 3c75_H 390 AGTQTLHIYDAATGEELRSVDQLGRGPQ 417 (426)
T ss_dssp TTTTEEEEEETTTCCEEEEECCCSSSCC
T ss_pred CCCCeEEEEECCCCCEEEEecCCCCCCc
Confidence 5999999999999999885 4444454
No 220
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=98.64 E-value=4.1e-10 Score=117.41 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=55.1
Q ss_pred CCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001109 1083 SRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAK 1145 (1155)
Q Consensus 1083 ~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~ 1145 (1155)
.+++.+++++ |+||++||.+||+++|+|||||+.|++||++|+++|+.|++.|+++++
T Consensus 137 ~d~l~~~q~e-----l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 137 ADPMSKVQAE-----LDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp CCCCHHHHHH-----HHTCCCEEESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHH-----HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4889999999 999999999999999999999999999999999999999999999874
No 221
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.63 E-value=7e-07 Score=113.27 Aligned_cols=116 Identities=21% Similarity=0.137 Sum_probs=79.9
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcC-----CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCe-------
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQD-----GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNE------- 106 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~D-----G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~------- 106 (1155)
.+|...+..++|||||++||.+..+ .+|++|+..+.+.+....+...+..++|+|| +.|+.++.++.
T Consensus 159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 3444567889999999999988765 4699999988776543211112346889999 88888776543
Q ss_pred -------EEEEECCCCc----eeeeecCC-CceeEEEEecCCCEEEEEeCCC-----cEEEEEecC
Q 001109 107 -------IQLWDLEARR----ITSTLPWE-SNITAFSVIFGTSYMYIGDEYG-----MVYVLKYDT 155 (1155)
Q Consensus 107 -------I~vWDl~t~~----~~~~l~~~-~~Vtsva~spd~~~l~~G~~dG-----~V~vw~~d~ 155 (1155)
|.+|++.++. ++.....+ ..+..+.++|||++|++...++ .|++|+.+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence 8999998775 23222222 3588999999999998877554 566665543
No 222
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.61 E-value=3.2e-06 Score=94.35 Aligned_cols=196 Identities=11% Similarity=0.107 Sum_probs=121.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEE--EEcCC---CCCEEEEEEEcCCcEEEEEecC---------C
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGL--LVSPK---QLAFKHLEFLQNQGFLVSISSG---------N 105 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~--~~~~~---~~~V~~l~Fs~dg~~LvS~s~D---------g 105 (1155)
.++..+.+++++|+|+++++ . ++.|.+|+..+.+.. ..... ...+..+.++|+|+++++...+ .
T Consensus 51 ~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~ 128 (297)
T 3g4e_A 51 TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH 128 (297)
T ss_dssp ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence 35678999999999996554 4 567999998765443 22211 2357889999998866654322 3
Q ss_pred eEEEEECCC-CceeeeecCCCceeEEEEecCCCEEEEEe-CCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEe
Q 001109 106 EIQLWDLEA-RRITSTLPWESNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFC 183 (1155)
Q Consensus 106 ~I~vWDl~t-~~~~~~l~~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~ 183 (1155)
...||.+.. ++.......-...+.++|+|+++.|++.. .++.|++|+++...+.+... + .+
T Consensus 129 ~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--~----~~----------- 191 (297)
T 3g4e_A 129 QGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR--R----SV----------- 191 (297)
T ss_dssp CEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE--E----EE-----------
T ss_pred CcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc--E----EE-----------
Confidence 345666553 33332222224568899999999887655 46778777776555443200 0 00
Q ss_pred cccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCe
Q 001109 184 PNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDK 263 (1155)
Q Consensus 184 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~ 263 (1155)
..+.. ......+ +++.++ | +..++...++.|..||..+++
T Consensus 192 -------------------~~~~~--------~~~~p~g-----~~~d~~--G------~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 192 -------------------YKLEK--------EEQIPDG-----MCIDAE--G------KLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp -------------------EECCG--------GGCEEEE-----EEEBTT--S------CEEEEEETTTEEEEECTTTCC
T ss_pred -------------------EECCC--------CCCCCCe-----eEECCC--C------CEEEEEcCCCEEEEEcCCCce
Confidence 00000 0111123 777776 4 456666678899999999888
Q ss_pred EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcC
Q 001109 264 VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVD 324 (1155)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~D 324 (1155)
++..... +...+++++|..||++.|..++..
T Consensus 232 ~~~~i~~------------------------------p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 232 RLQTVKL------------------------------PVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEEEC------------------------------SSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEEEEEC------------------------------CCCCceEEEEeCCCCCEEEEEcCC
Confidence 7764211 135689999986788877766653
No 223
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.57 E-value=0.0066 Score=77.25 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=96.3
Q ss_pred CcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccc
Q 001109 549 LVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEE 628 (1155)
Q Consensus 549 ~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~ 628 (1155)
+++++. .|..++-|..||..++.+.... .... .-...-....|.+++.+++|+.|.+|+.++-|.+|+..++...
T Consensus 366 ~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~-~~~~--~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~- 440 (795)
T 4a2l_A 366 KDKNLW-IGTNDGGLNLYNPITQRFTSYT-LQED--ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE- 440 (795)
T ss_dssp TTSCEE-EEESSSCEEEECTTTCCEEEEC-CC--------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-
T ss_pred CCCCEE-EEECCCCeEEEcCCCCcEEEEe-cCCC--CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-
Confidence 445544 4677777999998776643211 1000 0000011247999999999986778888777889987764311
Q ss_pred ceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEecc---CCCCCC
Q 001109 629 TLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDS---LSNSNS 705 (1155)
Q Consensus 629 ~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~---~~~h~~ 705 (1155)
.+..... ..+...|.++...++|++.+ |+.+| +.+||..++........ -.-...
T Consensus 441 -------------~~~~~~~-------~l~~~~v~~i~~d~~g~lwi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (795)
T 4a2l_A 441 -------------NFNQRNS-------QLVNENVYAILPDGEGNLWL-GTLSA-LVRFNPEQRSFTTIEKEKDGTPVVSK 498 (795)
T ss_dssp -------------EECTTTS-------CCSCSCEEEEEECSSSCEEE-EESSC-EEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred -------------EeecCCC-------CcCCCeeEEEEECCCCCEEE-EecCc-eeEEeCCCCeEEEccccccccccCCc
Confidence 0000000 02345799999999998555 44455 88899887755432110 001235
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCce
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~ 760 (1155)
.|.++... ++|++ ..|+. +-|..||..+++.
T Consensus 499 ~i~~i~~d----------------------~~g~l-Wigt~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 499 QITTLFRD----------------------SHKRL-WIGGE-EGLSVFKQEGLDI 529 (795)
T ss_dssp CEEEEEEC----------------------TTCCE-EEEES-SCEEEEEEETTEE
T ss_pred eEEEEEEC----------------------CCCCE-EEEeC-CceEEEeCCCCeE
Confidence 68888776 56664 44555 5688999888766
No 224
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.57 E-value=2.8e-06 Score=94.74 Aligned_cols=202 Identities=8% Similarity=0.004 Sum_probs=125.7
Q ss_pred CCCCceEEEEcCC-CCEEEEEEcCCeEEEEccCCceEEEE-cCC-----CCCEEEEEEEcCCcEEEEEecC---------
Q 001109 41 IPSTASILAFDHV-QSLLAIGTQDGRIKVIGGDNIEGLLV-SPK-----QLAFKHLEFLQNQGFLVSISSG--------- 104 (1155)
Q Consensus 41 ~~~~vs~lafsp~-g~lLAsgs~DG~I~vw~~~~~~~~~~-~~~-----~~~V~~l~Fs~dg~~LvS~s~D--------- 104 (1155)
+...+..++++|+ |+++++.. .+.|.+|+.. .+.... ... ...+..++|.++|..+++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4467899999999 77665544 4478899887 444332 211 1347899999998777766554
Q ss_pred ------CeEEEEECCCCceeeeecCCCceeEEEEe----cCCCEEEEEe-CCCcEEEEEecCCCceeeccceeccCCcee
Q 001109 105 ------NEIQLWDLEARRITSTLPWESNITAFSVI----FGTSYMYIGD-EYGMVYVLKYDTEEGKLIHSPYYVPKDVIE 173 (1155)
Q Consensus 105 ------g~I~vWDl~t~~~~~~l~~~~~Vtsva~s----pd~~~l~~G~-~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~ 173 (1155)
+.|..||.. ++.............++++ |+++.|+++. .++.|++|+++. .+++.. ... .
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~-~g~~~~--~~~----~- 217 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG-PAKIEN--KKV----W- 217 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-TTEEEE--EEE----E-
T ss_pred cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC-CCcccc--ceE----E-
Confidence 567777766 5544333323456889999 9998877765 567787776542 222210 000 0
Q ss_pred eeceeEeeEecccccccccccccccceeeecCCCCCCCcccccc-cccccceeeEEEEeecccccccccccEEEEEEcCC
Q 001109 174 VFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFII-RSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANG 252 (1155)
Q Consensus 174 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG 252 (1155)
..++. . . ....+ +++.++ + +..++...++
T Consensus 218 -----------------------------~~~~~-~-------~~~~p~~-----i~~d~~--G------~l~v~~~~~~ 247 (314)
T 1pjx_A 218 -----------------------------GHIPG-T-------HEGGADG-----MDFDED--N------NLLVANWGSS 247 (314)
T ss_dssp -----------------------------EECCC-C-------SSCEEEE-----EEEBTT--C------CEEEEEETTT
T ss_pred -----------------------------EECCC-C-------CCCCCCc-----eEECCC--C------CEEEEEcCCC
Confidence 00000 0 0 11223 788876 4 4566666789
Q ss_pred eEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEE-EEcCCcEEEEE
Q 001109 253 LIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAV-GYVDGDILLWN 331 (1155)
Q Consensus 253 ~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~las-g~~DG~I~lWd 331 (1155)
.|.+||..+++.+..... +...+.+++|+ +||+.|.. ...++.|..|+
T Consensus 248 ~i~~~d~~~g~~~~~~~~------------------------------~~~~~~~i~~~-~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRC------------------------------PFEKPSNLHFK-PQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EEEEECTTCBSCSEEEEC------------------------------SSSCEEEEEEC-TTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCcEeEEEeC------------------------------CCCCceeEEEC-CCCCEEEEEeCCCCeEEEEe
Confidence 999999886665432110 13568899997 99995554 45568999999
Q ss_pred cCC
Q 001109 332 LRA 334 (1155)
Q Consensus 332 ~~s 334 (1155)
+..
T Consensus 297 ~~~ 299 (314)
T 1pjx_A 297 WQR 299 (314)
T ss_dssp CSS
T ss_pred CCC
Confidence 865
No 225
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.56 E-value=0.00012 Score=80.32 Aligned_cols=195 Identities=12% Similarity=-0.004 Sum_probs=126.8
Q ss_pred CCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceee-
Q 001109 42 PSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITS- 119 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~- 119 (1155)
...+.+++++++|++.++...++.|.+|+..+.......+ ....+..+++.++|...++...++.|.+||.. ++...
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence 3578899999999988877778999999987332222332 23578999999998776666667899999988 55432
Q ss_pred eec-CCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccccc
Q 001109 120 TLP-WESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNA 198 (1155)
Q Consensus 120 ~l~-~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 198 (1155)
.+. ....+.++++++++++.++...++.|.. ++.. +++. .+..+.
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~--~~~~-g~~~--~~~~~~----------------------------- 143 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGK--LTAD-GTIY--EYDLPN----------------------------- 143 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEE--ECTT-SCEE--EEECSS-----------------------------
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEE--ECCC-CCEE--EccCCC-----------------------------
Confidence 222 2267899999999987766655676644 4544 3221 010000
Q ss_pred ceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccc
Q 001109 199 SLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTE 278 (1155)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~ 278 (1155)
....+.+ +++.|+ + +..++...++.|..+|. +++...... ..
T Consensus 144 -----------------~~~~~~~-----i~~d~~--g------~l~v~~~~~~~i~~~~~-~g~~~~~~~------~~- 185 (300)
T 2qc5_A 144 -----------------KGSYPAF-----ITLGSD--N------ALWFTENQNNSIGRITN-TGKLEEYPL------PT- 185 (300)
T ss_dssp -----------------TTCCEEE-----EEECTT--S------SEEEEETTTTEEEEECT-TCCEEEEEC------SS-
T ss_pred -----------------CCCCcee-----EEECCC--C------CEEEEecCCCeEEEECC-CCcEEEeeC------CC-
Confidence 0111223 778776 3 43444444788999998 566543210 00
Q ss_pred cccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEc
Q 001109 279 IVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNL 332 (1155)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~ 332 (1155)
+...+.++++. ++|...++....+.|.+|+.
T Consensus 186 ----------------------~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 186 ----------------------NAAAPVGITSG-NDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp ----------------------TTCCEEEEEEC-TTSSEEEEETTTTEEEEECT
T ss_pred ----------------------CCCCcceEEEC-CCCCEEEEccCCCEEEEEcC
Confidence 13457789998 89987777666778999997
No 226
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.54 E-value=3e-06 Score=99.38 Aligned_cols=228 Identities=10% Similarity=0.040 Sum_probs=132.9
Q ss_pred EEEEcCCCCEEEEEE----------cCCeEEEEccCCceEEEEc--C-C-----CCCEEEEEEEcCCcEEEEEec--CCe
Q 001109 47 ILAFDHVQSLLAIGT----------QDGRIKVIGGDNIEGLLVS--P-K-----QLAFKHLEFLQNQGFLVSISS--GNE 106 (1155)
Q Consensus 47 ~lafsp~g~lLAsgs----------~DG~I~vw~~~~~~~~~~~--~-~-----~~~V~~l~Fs~dg~~LvS~s~--Dg~ 106 (1155)
.++|||||++|.++. .++.|.++|..+.+.+... + . ...-..+.|+|||++|+.+.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888876 4678999999887665433 2 0 112347899999999998874 589
Q ss_pred EEEEECCCCceeeeecCCCc--------eeEEEEecCCCEEEEEeCCCcEEEE---EecCCCceeeccceeccCCceeee
Q 001109 107 IQLWDLEARRITSTLPWESN--------ITAFSVIFGTSYMYIGDEYGMVYVL---KYDTEEGKLIHSPYYVPKDVIEVF 175 (1155)
Q Consensus 107 I~vWDl~t~~~~~~l~~~~~--------Vtsva~spd~~~l~~G~~dG~V~vw---~~d~~~~~l~~~~~~i~~~~~~~~ 175 (1155)
|.|.|+.+++.+.++...+. -..++++++|+++++...++.+..- .++.... |..
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~-----p~~--------- 267 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE-----LLI--------- 267 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS-----CBC---------
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC-----cee---------
Confidence 99999999999988876432 1113455555555554444443210 0111110 000
Q ss_pred ceeEeeEecccccccccccccccceeeecCCCCC------------CCccc-ccccccccceeeEEEEeecccccccccc
Q 001109 176 NHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDE------------SGFID-FIIRSKLRFFVEIRLLQFQKHVNSTLGF 242 (1155)
Q Consensus 176 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~-~~~~~v~~~~v~~v~~~p~~~~~~~~~~ 242 (1155)
+.+.|.+++.+.+.. ........+.+.... ..... ........ ++++|++
T Consensus 268 --~~~~~~~dg~~~~~~--s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~-----va~s~dg-------- 330 (426)
T 3c75_H 268 --NHPAFSLRSGRLVWP--TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQ-----TAYHRQS-------- 330 (426)
T ss_dssp --SCCEECTTTCEEEEE--BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSC-----EEEEGGG--------
T ss_pred --eEeeecCCCCEEEEE--eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCcee-----eEEcCCC--------
Confidence 012233333211100 000011111110000 00000 00111112 7788874
Q ss_pred cEEEEEEc----------CCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEe
Q 001109 243 SQLLLVYA----------NGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWAS 312 (1155)
Q Consensus 243 ~~llsg~~----------dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~ 312 (1155)
++++++.. .+.|.+.|+.+.+.+..... .....++.|+
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-------------------------------g~~P~gia~s- 378 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-------------------------------GHEIDSINVS- 378 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-------------------------------EEEECEEEEC-
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-------------------------------CCCcCeEEEc-
Confidence 45666643 35799999999998875211 2236799999
Q ss_pred cCCC-eEEEEE-cCCcEEEEEcCCCCC
Q 001109 313 NDGS-VLAVGY-VDGDILLWNLRAAAS 337 (1155)
Q Consensus 313 pdG~-~lasg~-~DG~I~lWd~~s~~~ 337 (1155)
|||+ ++++.. .+++|.++|+.+.+.
T Consensus 379 pDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 379 QDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp CSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred cCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 9999 888887 599999999988754
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.51 E-value=1.9e-06 Score=108.41 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=83.4
Q ss_pred CCCcceeeccCCCCCceEEEEcCCCCEEEEEEc-----CCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC
Q 001109 30 DFDPRVTLHYGIPSTASILAFDHVQSLLAIGTQ-----DGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG 104 (1155)
Q Consensus 30 ~~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~-----DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D 104 (1155)
.+|+.... .++...+..++|||||++||.+.. +.+|+|||..+.+.+...........++|+ |+..|+.++.+
T Consensus 117 llD~n~la-~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 117 FLDPNTLS-PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp EECGGGGS-TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESS
T ss_pred EEehhhcc-CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEec
Confidence 45555443 356667888999999999996543 257999999887754322111112467899 99989888876
Q ss_pred C-------------eEEEEECCCCc----eeeeecC--CCceeEEEEecCCCEEEEEeCC----CcEEEEEecC
Q 001109 105 N-------------EIQLWDLEARR----ITSTLPW--ESNITAFSVIFGTSYMYIGDEY----GMVYVLKYDT 155 (1155)
Q Consensus 105 g-------------~I~vWDl~t~~----~~~~l~~--~~~Vtsva~spd~~~l~~G~~d----G~V~vw~~d~ 155 (1155)
. .|.+|++.++. ++..... ...+.++.++|||++|++.... ..|++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence 4 49999998765 3333333 2347789999999998765432 3566655443
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.51 E-value=3e-05 Score=87.79 Aligned_cols=107 Identities=7% Similarity=-0.056 Sum_probs=74.1
Q ss_pred ceEEEEcCC-CCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecC
Q 001109 45 ASILAFDHV-QSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPW 123 (1155)
Q Consensus 45 vs~lafsp~-g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~ 123 (1155)
....+|+|+ +.++.++..++.|.+|+..+.+.... .....+.++.|+++|+++++. ++.|.+||+++++.......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeC
Confidence 467899997 55777777889999999877654322 224579999999998766654 44599999988875432221
Q ss_pred -----CCceeEEEEecCCCEEEEEeCC----CcEEEEEec
Q 001109 124 -----ESNITAFSVIFGTSYMYIGDEY----GMVYVLKYD 154 (1155)
Q Consensus 124 -----~~~Vtsva~spd~~~l~~G~~d----G~V~vw~~d 154 (1155)
...+++++++|+|++.++...+ +...||.++
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 1358899999999865543321 234566666
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.42 E-value=2.7e-05 Score=97.45 Aligned_cols=191 Identities=10% Similarity=0.021 Sum_probs=114.9
Q ss_pred ccCCcCcEEEEEECCC-------------------cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCC--
Q 001109 546 EDYLVERLYIAGYRDG-------------------STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVT-- 604 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~Dg-------------------tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg-- 604 (1155)
.+.+++++++.+..++ +|..+|..+++..=.+....+ ...+.+... ...-+.+..+|
T Consensus 249 ~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~-d~wd~~~~~-~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 249 TFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG-DNWDYTSTQ-PMILADIKIAGKP 326 (677)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT-CCSCCCCCS-CCEEEEEEETTEE
T ss_pred eEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC-cccccccCC-CcEEEecccCCcE
Confidence 5567777777777664 599999998874321211100 000111111 23334555688
Q ss_pred -CeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCcee------------EEee---cCCCCeEEEEEc
Q 001109 605 -LNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCK------------ALFS---VLNSPICNLKFS 668 (1155)
Q Consensus 605 -~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~------------~~l~---~h~~~VtslafS 668 (1155)
..|++++.+|.|+++|..+++......+...+ ....+. ..| .++ ..+. +... =..++|+
T Consensus 327 ~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~--~~~~~d-~~g-~~~~~~~~~~~~~~~~~~P~~~G~~~-w~~~a~d 401 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN--WASGYD-KHG-KPIGIAAARDGSKPQDAVPGPYGAHN-WHPMSFN 401 (677)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCS--SEEEEC-TTS-CEEECGGGGCTTSCEECSSCTTCSSC-SSCCEEE
T ss_pred eeEEEEECCCCEEEEEECCCCCEeccccccccC--cccccC-CCC-ceeeccccCcCCCccEECcCcccccC-CCCceEc
Confidence 68999999999999999887643222111000 000000 000 000 0000 1100 1257899
Q ss_pred CCCCEEEEEeCC-------------------------------------------CcEEEEecCCccEEEEeccCCCCCC
Q 001109 669 NFGARLAVGFEC-------------------------------------------SQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 669 pdg~~LAsGs~D-------------------------------------------g~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
|+++++.++..+ |.|..||+.+++++.+... ..
T Consensus 402 p~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~ 477 (677)
T 1kb0_A 402 PQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----VS 477 (677)
T ss_dssp TTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----SS
T ss_pred CCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----CC
Confidence 999888876532 7899999999999887642 33
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeecccC
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHHQ 769 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~~ 769 (1155)
++.+..+. .++.++++++.|+.+++||..||+++.+..+...
T Consensus 478 ~~~~g~~~----------------------~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 478 PWNGGTLT----------------------TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp SCCCCEEE----------------------ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred CCcCcceE----------------------eCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 44444454 4577899999999999999999999999865543
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.42 E-value=5.4e-05 Score=94.95 Aligned_cols=193 Identities=9% Similarity=0.039 Sum_probs=113.3
Q ss_pred ccCCcCcEEEEEECCCc-------------------EEEEeCCCCCeeeeeeeCCCcCc-cccCCCCCCeEEEEEecCCC
Q 001109 546 EDYLVERLYIAGYRDGS-------------------TRIWDATYPTLSLIHVFGSELPG-IRTATESESVSALEFCSVTL 605 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~Dgt-------------------VrlWD~~~~~l~~l~~l~~~~~~-i~~~gh~~~V~~lafspdg~ 605 (1155)
++.|+.++++.+..+++ |..||+.+++.. ..+...-.. ... ....++....+..+|+
T Consensus 241 ~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~--W~~~~~~~d~wd~-~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 241 AYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV--WHYQTTPGDAWDY-TATQHMILAELPIDGK 317 (689)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE--EEEESSTTCCSCC-CCCSCEEEEEEEETTE
T ss_pred eEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee--EeeecCCcccccc-cCCCCcEEEeeccCCc
Confidence 56677778888887764 999999999742 222210000 000 0112333334445776
Q ss_pred ---eEEEEeCCCeEEEEEeccCccccceeeeccC--------CceEEEe---c--CCCCCceeEEeecC-CC-CeEEEEE
Q 001109 606 ---NLAIGSSSGLVWLYNLIKSSNEETLNLVTET--------GKEVHIL---P--GGDGPQCKALFSVL-NS-PICNLKF 667 (1155)
Q Consensus 606 ---~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~--------~~~~~~~---~--~~~g~~~~~~l~~h-~~-~Vtslaf 667 (1155)
.|+.++.+|.++++|..+++......+...+ ....... . ..++.. ...+.+. .+ .-..++|
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~-~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR-NLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC-EEESSCTTCSSCSSCCEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe-eEeCCCcccccCCCcceE
Confidence 7899999999999999887542211111100 0000000 0 000000 0000000 00 1123789
Q ss_pred cCCCCEEEEEeC---------------------------------------------CCcEEEEecCCccEEEEeccCCC
Q 001109 668 SNFGARLAVGFE---------------------------------------------CSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 668 Spdg~~LAsGs~---------------------------------------------Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
+|+.++|.+++. +|.|..||+.+++.+.+...
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--- 473 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--- 473 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---
Confidence 999888777632 47899999999999887643
Q ss_pred CCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeeccc
Q 001109 703 SNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHH 768 (1155)
Q Consensus 703 h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~ 768 (1155)
..++..-.+. ..+.++++++.|+.|++||..||+.|.......
T Consensus 474 -~~~~~~g~~~----------------------tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 474 -VTIFNGGTLS----------------------TAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp -SSSCCCCEEE----------------------ETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred -CCCccCccce----------------------ECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence 2333333444 357789999999999999999999999885543
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.40 E-value=1.6e-05 Score=90.83 Aligned_cols=115 Identities=9% Similarity=-0.020 Sum_probs=82.6
Q ss_pred CCCCCceEEEEcCCCCEEEEEEc-----CCeEEEEccCCceEEE--EcCC-----CCCEEEEEEEcCCcEEEEE-e---c
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQ-----DGRIKVIGGDNIEGLL--VSPK-----QLAFKHLEFLQNQGFLVSI-S---S 103 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~-----DG~I~vw~~~~~~~~~--~~~~-----~~~V~~l~Fs~dg~~LvS~-s---~ 103 (1155)
++-..+..++|+|+|+++++-+. +++|.+||..+.+.+. ..+. ...+..++|++++++++.+ . .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 45567899999999998887655 5799999987665433 2221 2346899999876665444 4 5
Q ss_pred CCeEEEEECCCCceeeeecCC------------------------------CceeEEEEecCCCEEEEEeCCCcEEEEEe
Q 001109 104 GNEIQLWDLEARRITSTLPWE------------------------------SNITAFSVIFGTSYMYIGDEYGMVYVLKY 153 (1155)
Q Consensus 104 Dg~I~vWDl~t~~~~~~l~~~------------------------------~~Vtsva~spd~~~l~~G~~dG~V~vw~~ 153 (1155)
++.|.+||+.+++....+..+ ..+..++++|++++||++...+. ++|.+
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~ 222 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRI 222 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEE
Confidence 789999999988765544321 13578999999999999887775 56666
Q ss_pred cC
Q 001109 154 DT 155 (1155)
Q Consensus 154 d~ 155 (1155)
+.
T Consensus 223 ~~ 224 (343)
T 2qe8_A 223 KS 224 (343)
T ss_dssp EH
T ss_pred EH
Confidence 54
No 232
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.38 E-value=1.2e-05 Score=90.12 Aligned_cols=114 Identities=10% Similarity=0.018 Sum_probs=78.1
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc--CC--CCCEEEEEEEcCCcEEEE----Eec---------
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS--PK--QLAFKHLEFLQNQGFLVS----ISS--------- 103 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~--~~--~~~V~~l~Fs~dg~~LvS----~s~--------- 103 (1155)
+...+..++++|+|+++++...++.|.+|+.++....+.. .. ...+..+.+.++|...++ +..
T Consensus 84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp SCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred CCCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccc
Confidence 3456889999999998877666789999987643222211 11 124667999999887775 221
Q ss_pred ----CCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCC------CcEEEEEecC
Q 001109 104 ----GNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEY------GMVYVLKYDT 155 (1155)
Q Consensus 104 ----Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~d------G~V~vw~~d~ 155 (1155)
.+.|..||..+++..... .....+.++|+||++.|+++... +.|++|+++.
T Consensus 164 ~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp CSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred cccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 256888888777654433 33556889999999999988775 5666655543
No 233
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.37 E-value=0.00043 Score=75.83 Aligned_cols=154 Identities=10% Similarity=0.019 Sum_probs=108.7
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCc
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSS 625 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~ 625 (1155)
.+.++++++++...++.|.+||.. +.+.. ..+. .+...+.+++++++|.+.++...++.|..|+.. +.
T Consensus 26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~---------~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 26 TSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP---------TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS---------STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred eECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC---------CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 667889999988889999999988 55322 1111 222478999999999887776667889988876 22
Q ss_pred cccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCC
Q 001109 626 NEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNS 705 (1155)
Q Consensus 626 ~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~ 705 (1155)
.. . ..+......+.+|++.++|+++++...++.|..||.. +...... +.....
T Consensus 94 ~~--------------~----------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~--~~~~~~ 146 (300)
T 2qc5_A 94 FT--------------E----------YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD--LPNKGS 146 (300)
T ss_dssp EE--------------E----------EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE--CSSTTC
T ss_pred eE--------------E----------ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc--CCCCCC
Confidence 10 0 0111223568899999999988887778899999988 5544221 122345
Q ss_pred CeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCcee
Q 001109 706 PVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHIL 761 (1155)
Q Consensus 706 ~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l 761 (1155)
.+..++++ ++|++.++...++.|.++|. +|+..
T Consensus 147 ~~~~i~~d----------------------~~g~l~v~~~~~~~i~~~~~-~g~~~ 179 (300)
T 2qc5_A 147 YPAFITLG----------------------SDNALWFTENQNNSIGRITN-TGKLE 179 (300)
T ss_dssp CEEEEEEC----------------------TTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CceeEEEC----------------------CCCCEEEEecCCCeEEEECC-CCcEE
Confidence 67888887 78886666666889999998 66654
No 234
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.36 E-value=7.7e-05 Score=93.35 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEecc
Q 001109 660 SPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDS 699 (1155)
Q Consensus 660 ~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~ 699 (1155)
.++....++.+|.++.+|+.||.|++||..+++++++..+
T Consensus 477 ~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 477 SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 3455566778888999999999999999999999988765
No 235
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.34 E-value=1e-05 Score=94.96 Aligned_cols=217 Identities=12% Similarity=0.061 Sum_probs=124.5
Q ss_pred EEEcCCCCEEEEEEcCC--eEEEEccCCceEEEEc----C-CCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeee
Q 001109 48 LAFDHVQSLLAIGTQDG--RIKVIGGDNIEGLLVS----P-KQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITST 120 (1155)
Q Consensus 48 lafsp~g~lLAsgs~DG--~I~vw~~~~~~~~~~~----~-~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~ 120 (1155)
++|+|+|++|.++..++ .|.+|+..+....... . ....+.+++|+|+++.|+.+..++.|..||+.++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 99999999998888766 7888887643322111 2 334677899999666777777788999999988764322
Q ss_pred ----ecCCCce---eEEEEecCCCEEEEEe-CCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccc
Q 001109 121 ----LPWESNI---TAFSVIFGTSYMYIGD-EYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKG 192 (1155)
Q Consensus 121 ----l~~~~~V---tsva~spd~~~l~~G~-~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~ 192 (1155)
....... ..++|+|++..||+.. .++.|+.| +.+.. .. .+.. .+.. .+
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~--~~~g~-~~----~~~g-------------~~~~----~g 311 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKI--TPDGE-CE----WFCG-------------SATQ----KT 311 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEE--CTTCC-EE----EEEE-------------CTTC----CS
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEE--ecCCC-EE----EEEe-------------CCCC----CC
Confidence 1122111 3999999766666665 45656554 44321 11 0000 0000 00
Q ss_pred ccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEE-cCCeEEEEEccCCeEEEEeccc
Q 001109 193 KAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVY-ANGLIILWDVSEDKVVLVRGSK 271 (1155)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~-~dG~I~lWd~~~~~~~~~~~~~ 271 (1155)
...+ . ....-+. ....++++|+ + +.+++-+ .++.|+.||+.++.+....+..
T Consensus 312 ---------------~~dg--~-~~~~~~~-~P~gia~d~d--G------~lyvad~~~~~~I~~~~~~~G~v~~~~g~~ 364 (409)
T 3hrp_A 312 ---------------VQDG--L-REEALFA-QPNGMTVDED--G------NFYIVDGFKGYCLRKLDILDGYVSTVAGQV 364 (409)
T ss_dssp ---------------CBCE--E-GGGCBCS-SEEEEEECTT--C------CEEEEETTTTCEEEEEETTTTEEEEEEECT
T ss_pred ---------------cCCC--c-ccccEeC-CCeEEEEeCC--C------CEEEEeCCCCCEEEEEECCCCEEEEEeCCC
Confidence 0000 0 0000000 1233889887 4 4445545 6899999998888766543310
Q ss_pred ccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEc
Q 001109 272 DLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNL 332 (1155)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~ 332 (1155)
. . .+... +. .. ...-.....+++. ++|.++++-..++.|+.+++
T Consensus 365 ~---~----~g~~~--g~---~~----~~~~~~P~giavd-~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 D---V----ASQID--GT---PL----EATFNYPYDICYD-GEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp T---C----BSCCC--BS---TT----TCCBSSEEEEEEC-SSSEEEEEESTTCEEEEEEE
T ss_pred C---C----CCcCC--CC---hh----ceEeCCceEEEEc-CCCCEEEEECCCCeEEEEEe
Confidence 0 0 00000 00 00 0012457899998 89988888888888888765
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.31 E-value=1.3e-07 Score=109.68 Aligned_cols=103 Identities=13% Similarity=0.172 Sum_probs=61.5
Q ss_pred CCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCC--Ccee-E
Q 001109 53 VQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWE--SNIT-A 129 (1155)
Q Consensus 53 ~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~--~~Vt-s 129 (1155)
++.+|++|+.||.|+.||..+++.+..... .++....+..++..+++++.|+.|..||.++|+.+..+..+ ..+. +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 478999999999999999988887766544 45555666777777777789999999999999887666543 1111 1
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 130 FSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 130 va~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
..+ .++..+++|+.+|.|+.| |..+++
T Consensus 87 p~~-~~~~~v~~g~~dg~v~a~--D~~tG~ 113 (369)
T 2hz6_A 87 PCR-SSDGILYMGKKQDIWYVI--DLLTGE 113 (369)
T ss_dssp SCC------CCCCEEEEEEEEE--CCC---
T ss_pred ceE-ecCCEEEEEeCCCEEEEE--ECCCCc
Confidence 111 145578888888977665 555444
No 237
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.31 E-value=4.2e-05 Score=85.49 Aligned_cols=97 Identities=10% Similarity=-0.039 Sum_probs=68.9
Q ss_pred CCceEEEEcCCCC-EEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeee
Q 001109 43 STASILAFDHVQS-LLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTL 121 (1155)
Q Consensus 43 ~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l 121 (1155)
......+|+|+|+ ++.++..++.|..|+..+....+.. ....+..+.|+++|+.+++...++.|.+||.+ ++.....
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~ 122 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLV 122 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEE
Confidence 4467789999998 7788888899999987554333332 34568899999998755554456889999986 5532211
Q ss_pred ---cC--CCceeEEEEecCCCEEEE
Q 001109 122 ---PW--ESNITAFSVIFGTSYMYI 141 (1155)
Q Consensus 122 ---~~--~~~Vtsva~spd~~~l~~ 141 (1155)
.. ...+++++++|+|++.++
T Consensus 123 ~~~~~~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 123 GRYAGKRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp CEETTEECSCCCCEEECTTSCEEEE
T ss_pred eccCCCccCCCCCEEECCCCCEEEe
Confidence 11 135778999999987775
No 238
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.29 E-value=6.8e-05 Score=84.83 Aligned_cols=112 Identities=11% Similarity=0.005 Sum_probs=71.5
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC--C---CCCEEEEEEEcCCcEEEEEecC----CeEEEEE
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP--K---QLAFKHLEFLQNQGFLVSISSG----NEIQLWD 111 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~--~---~~~V~~l~Fs~dg~~LvS~s~D----g~I~vWD 111 (1155)
++..+.+++++|+|+++++. .+ .|.+|+..+.+...... . ...+..+.|+|+|+++++...+ +...||.
T Consensus 88 ~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 88 LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence 45678999999999877654 44 49999976655432211 1 2358899999998866654422 2334444
Q ss_pred CCCCceeeeecCCCceeEEEEecCCCEEEEEe-CCCcEEEEEec
Q 001109 112 LEARRITSTLPWESNITAFSVIFGTSYMYIGD-EYGMVYVLKYD 154 (1155)
Q Consensus 112 l~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d 154 (1155)
+.+++.............++|+|++++|+++. .++.|++|+++
T Consensus 166 ~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 166 VAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred EeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 43554432222224567899999999887765 45667666554
No 239
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.27 E-value=7.1e-06 Score=94.59 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=66.8
Q ss_pred EEEEcCCCCEEEEEE----------cCCeEEEEccCCceEEEEcCCC--------CCEEEEEEEcCCcEEEEEec--CCe
Q 001109 47 ILAFDHVQSLLAIGT----------QDGRIKVIGGDNIEGLLVSPKQ--------LAFKHLEFLQNQGFLVSISS--GNE 106 (1155)
Q Consensus 47 ~lafsp~g~lLAsgs----------~DG~I~vw~~~~~~~~~~~~~~--------~~V~~l~Fs~dg~~LvS~s~--Dg~ 106 (1155)
.++|+|||++|.++. .+++|.+||..+.+.+...+-. .....++|+|||++|+.+.. ++.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999999886 3689999999887776553211 12457899999999998874 467
Q ss_pred EEE--EECCCCceeeeecCCCceeEEEEecCCCE-EEEEeCCCcEEEEE
Q 001109 107 IQL--WDLEARRITSTLPWESNITAFSVIFGTSY-MYIGDEYGMVYVLK 152 (1155)
Q Consensus 107 I~v--WDl~t~~~~~~l~~~~~Vtsva~spd~~~-l~~G~~dG~V~vw~ 152 (1155)
|.+ ||+.+ +.++...+. +.+.|+++. .++.+.||.+.+.+
T Consensus 149 v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp EEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEE
T ss_pred EEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEE
Confidence 999 99987 445543221 123344432 23344566554433
No 240
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.24 E-value=0.00076 Score=77.37 Aligned_cols=104 Identities=9% Similarity=0.111 Sum_probs=69.2
Q ss_pred CCCEEEEEEcCCeEEEEccCCceEEEEcCC----------CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeec
Q 001109 53 VQSLLAIGTQDGRIKVIGGDNIEGLLVSPK----------QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLP 122 (1155)
Q Consensus 53 ~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~----------~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~ 122 (1155)
++..|.+++.+|.|..||..+.+.+..... ...+.... ..+++.|+.++.++.|..+|.++|+.+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 356788888899999999987776654432 22333222 2234678888899999999999999887776
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCcee
Q 001109 123 WESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKL 160 (1155)
Q Consensus 123 ~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l 160 (1155)
....+.+.... .+..+++++.+|.|+. +|..+++.
T Consensus 131 ~~~~~~~~p~~-~~~~v~v~~~~g~l~~--~d~~tG~~ 165 (376)
T 3q7m_A 131 VAGEALSRPVV-SDGLVLIHTSNGQLQA--LNEADGAV 165 (376)
T ss_dssp CSSCCCSCCEE-ETTEEEEECTTSEEEE--EETTTCCE
T ss_pred CCCceEcCCEE-ECCEEEEEcCCCeEEE--EECCCCcE
Confidence 55333221111 2457888998996644 56655544
No 241
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=0.041 Score=69.69 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=71.3
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-C--C-----CCCEEEEEEEc--CCcEEEEEecCCeEEEEEC
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-P--K-----QLAFKHLEFLQ--NQGFLVSISSGNEIQLWDL 112 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~--~-----~~~V~~l~Fs~--dg~~LvS~s~Dg~I~vWDl 112 (1155)
..|.+|..+++|..|-+|+.++-+..|+..+....... . . ...|.++.... ++ .|..++.++.|..+|.
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~ 144 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDI 144 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEET
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEEC
Confidence 35889999999983456888755889998765543321 1 1 23588887777 64 4555664566889998
Q ss_pred CCCceeeeec------CCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 113 EARRITSTLP------WESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 113 ~t~~~~~~l~------~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
.+++...... ....|.++...+++.+. +|+.++-+ +.++...++
T Consensus 145 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lw-igt~~~Gl--~~~~~~~~~ 194 (781)
T 3v9f_A 145 ATGKFTHYNKSTVPALPSEQTWTATEAEDGKLY-IGHVEGGL--SILSLNDKS 194 (781)
T ss_dssp TTTEEEEESTTTCTTCSCCCEEEEEEEETTEEE-EEETTTEE--EEEETTTTE
T ss_pred CCCeEEeeccCcccCCCccceEEEEECCCCCEE-EEecCCCe--EEEcCCCCc
Confidence 8776543211 12468888888777654 46666334 345654433
No 242
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.19 E-value=0.00043 Score=79.44 Aligned_cols=151 Identities=10% Similarity=0.044 Sum_probs=92.2
Q ss_pred EEEEEECCCcEEEEeCCCCCeeeeeeeCCCc-----CccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccc
Q 001109 553 LYIAGYRDGSTRIWDATYPTLSLIHVFGSEL-----PGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNE 627 (1155)
Q Consensus 553 lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~-----~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~ 627 (1155)
.++.|..+|.|..+|..++...-........ ..+ ......++ + .+..+.+++.+|.|..+|..++..
T Consensus 190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~~~~p~----~--~~~~v~~~~~~g~l~~~d~~tG~~- 261 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL-SDVDTTPV----V--VNGVVFALAYNGNLTALDLRSGQI- 261 (376)
T ss_dssp EEEECCTTTEEEEEETTTCCEEEEEECCC------------CCCCCCE----E--ETTEEEEECTTSCEEEEETTTCCE-
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc-cccCCCcE----E--ECCEEEEEecCcEEEEEECCCCcE-
Confidence 5666788999999999888732111111000 000 00001121 1 245677788899999999876532
Q ss_pred cceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCe
Q 001109 628 ETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPV 707 (1155)
Q Consensus 628 ~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V 707 (1155)
++. . ......++.. ++..|.+++.+|.|..+|..+++.++..... ....+
T Consensus 262 ------------~w~----------~----~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~ 311 (376)
T 3q7m_A 262 ------------MWK----------R----ELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL--LHRLL 311 (376)
T ss_dssp ------------EEE----------E----CCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT--TTSCC
T ss_pred ------------Eee----------c----cCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc--CCCcc
Confidence 111 1 1122334443 3667888889999999999999988765421 11111
Q ss_pred eEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeee
Q 001109 708 LYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 708 ~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~ 765 (1155)
.+... .+..|++++.+|.|.++|..+|+++....
T Consensus 312 ~~~~~------------------------~~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 312 TSPVL------------------------YNGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp CCCEE------------------------ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCEE------------------------ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 12222 24678999999999999999999988764
No 243
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.19 E-value=0.00012 Score=92.01 Aligned_cols=155 Identities=12% Similarity=0.042 Sum_probs=97.3
Q ss_pred ccCCcCcEEE-----EEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCe-----
Q 001109 546 EDYLVERLYI-----AGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGL----- 615 (1155)
Q Consensus 546 ~~s~~~~lLa-----Tgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~----- 615 (1155)
.++|+|++|| .|+.+.+|++||+.++..... .+. . .....++|+ ||+.|+.+..+..
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~----~-------~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLK----D-------VKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEE----E-------EESCCCEEE-TTTEEEEEESSCCC----
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccC----C-------ceeccEEEe-CCCEEEEEEecCcccccc
Confidence 7899999888 344446899999999874322 111 0 012567899 9999999988743
Q ss_pred --------EEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeec-CCCCeEEEEEcCCCCEEEEEeC----CCc
Q 001109 616 --------VWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSV-LNSPICNLKFSNFGARLAVGFE----CSQ 682 (1155)
Q Consensus 616 --------V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~-h~~~VtslafSpdg~~LAsGs~----Dg~ 682 (1155)
|++|++.+..... .++..... |...+.+++|||||++|+.... ++.
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~---------------------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 260 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDD---------------------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNR 260 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGC---------------------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred cccCCCcEEEEEECCCCcccc---------------------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence 8888876643210 01111123 4556788999999998865443 348
Q ss_pred EEEEecCCcc-EEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCc-EEEEEeCC---ceEEEEECCC
Q 001109 683 VAMLDISTFS-VLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKE-TLFFMTKD---AHIVVCDSTT 757 (1155)
Q Consensus 683 V~lWDi~~~~-~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~-~L~s~s~D---g~I~vwd~~t 757 (1155)
|.+||+.++. ..... ..+...+... |+ ++|. ++++...| +.|.+||+.+
T Consensus 261 i~~~d~~~~~~~~~~l---~~~~~~~~~~-~~----------------------~~g~~l~~~t~~~~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 261 LYVKDLSQENAPLLTV---QGDLDADVSL-VD----------------------NKGSTLYLLTNRDAPNRRLVTVDAAN 314 (693)
T ss_dssp EEEEETTSTTCCCEEE---ECSSSSCEEE-EE----------------------EETTEEEEEECTTCTTCEEEEEETTS
T ss_pred EEEEECCCCCCceEEE---eCCCCceEEE-Ee----------------------ccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 9999998763 12221 2244455554 44 3444 44454444 5788899887
Q ss_pred Cce
Q 001109 758 GHI 760 (1155)
Q Consensus 758 G~~ 760 (1155)
+..
T Consensus 315 ~~~ 317 (693)
T 3iuj_A 315 PGP 317 (693)
T ss_dssp CCG
T ss_pred CCc
Confidence 654
No 244
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.16 E-value=9e-05 Score=84.46 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=75.1
Q ss_pred CCceEEEEcCCCCEEEEEEc--CCeEEEEccCCceEEEEcC--------CCCCEEEEEEEcCCcEEEEEec------CCe
Q 001109 43 STASILAFDHVQSLLAIGTQ--DGRIKVIGGDNIEGLLVSP--------KQLAFKHLEFLQNQGFLVSISS------GNE 106 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~--DG~I~vw~~~~~~~~~~~~--------~~~~V~~l~Fs~dg~~LvS~s~------Dg~ 106 (1155)
..+..++++|+|+++++... +|.++||..++... ..++ +-..+..++|+++|+ |..++. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCCe
Confidence 67889999999999888642 34244444323332 2221 234789999999965 544442 579
Q ss_pred EEEEECCCCceeeeecCC-------CceeEEEEecCCCEEEEEeC----CCcEEEEEec
Q 001109 107 IQLWDLEARRITSTLPWE-------SNITAFSVIFGTSYMYIGDE----YGMVYVLKYD 154 (1155)
Q Consensus 107 I~vWDl~t~~~~~~l~~~-------~~Vtsva~spd~~~l~~G~~----dG~V~vw~~d 154 (1155)
|.+||+.+++++.++..+ ..+..++++|++..+|+... ++.|.+|+++
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~ 153 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ 153 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence 999999999877766542 35689999987777777654 5667776554
No 245
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.15 E-value=0.00042 Score=86.83 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=44.2
Q ss_pred CcEEEEEecCCeEEEEECCCCceeeeecCCCc-----------e-eEEEEecCCCEEEEEeCCCcEEEEEecCCCceee
Q 001109 95 QGFLVSISSGNEIQLWDLEARRITSTLPWESN-----------I-TAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLI 161 (1155)
Q Consensus 95 g~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~-----------V-tsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~ 161 (1155)
++.|+.++.++.|.-+|.++|+.+.++..... + ..+++ ++..+++++.+|.|+. +|..++++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~A--lDa~TG~~~ 144 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEA--IDAKTGQRA 144 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEE--EETTTCCEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEE--EECCCCCEe
Confidence 46788888899999999999999887754321 0 11222 4678899999997654 566666543
No 246
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.09 E-value=3.8e-05 Score=88.48 Aligned_cols=79 Identities=4% Similarity=-0.107 Sum_probs=61.2
Q ss_pred EEEcCCCCEEEEEeC-C--------CcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCC
Q 001109 665 LKFSNFGARLAVGFE-C--------SQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSND 735 (1155)
Q Consensus 665 lafSpdg~~LAsGs~-D--------g~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~ 735 (1155)
++|+|||++|.++.. + +.+.+||+.+.+++.+... + .....++|+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v--g--~~p~gi~~s---------------------- 322 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--G--HDSDAIIAA---------------------- 322 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--E--EEECEEEEC----------------------
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC--C--CCcceEEEC----------------------
Confidence 789999998887643 2 3567999999998876543 1 257889998
Q ss_pred CCCcE-EEEEe-CCceEEEEECCCCceeeeeecccC
Q 001109 736 TKKET-LFFMT-KDAHIVVCDSTTGHILFSRSIHHQ 769 (1155)
Q Consensus 736 pd~~~-L~s~s-~Dg~I~vwd~~tG~~l~~~~~~~~ 769 (1155)
|||+. +++.. .+++|.|||+.|++.+.+.++...
T Consensus 323 ~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 323 QDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp CSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred CCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence 88875 45555 499999999999999998866544
No 247
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.08 E-value=6.1e-07 Score=103.90 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=79.6
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccc
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEET 629 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~ 629 (1155)
++..+++|+.||.|+.||+.+++.. ..++. .++.+..+.++++.+++++.||.|+.||..+++..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~--W~~~~-----------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~-- 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK--WTLKE-----------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL-- 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE--EEEEC-----------CCSCCCC-----CCEEECTTTCCEEEC-----CCS--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE--EEecC-----------CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee--
Confidence 3557888999999999999998732 33221 13445556678888888899999999999765421
Q ss_pred eeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeE
Q 001109 630 LNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLY 709 (1155)
Q Consensus 630 ~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~s 709 (1155)
+.+....+ . .....++ ++ ++..|++|+.||.|..||..+++.++.... +. .
T Consensus 73 -----------w~~~~~~~----~--~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~-~--- 123 (369)
T 2hz6_A 73 -----------TKLPFTIP----E--LVQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF-A--- 123 (369)
T ss_dssp -----------EECSCCHH----H--HHTTCSC----C------CCCCEEEEEEEEECCC--------------------
T ss_pred -----------eeeeccCc----c--ccccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC-c---
Confidence 11100000 0 0011111 11 345788899999999999999998765432 21 1
Q ss_pred EEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeee
Q 001109 710 LAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 710 lafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~ 765 (1155)
..++ |++..|++++.|+.|..||..+|++++...
T Consensus 124 ~~~~----------------------p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 124 DSLS----------------------PSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp -------------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred cccc----------------------ccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 1222 567889999999999999999999988763
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.07 E-value=0.0004 Score=75.88 Aligned_cols=221 Identities=10% Similarity=0.049 Sum_probs=130.7
Q ss_pred CcceeeccCCCCC--ceEEEEcCCCCEEEEEEc--CCeEEEEccCCceEEEEcC--CCCCEEEEEEEcCCcEEEEEe-cC
Q 001109 32 DPRVTLHYGIPST--ASILAFDHVQSLLAIGTQ--DGRIKVIGGDNIEGLLVSP--KQLAFKHLEFLQNQGFLVSIS-SG 104 (1155)
Q Consensus 32 ~~~~~~~~G~~~~--vs~lafsp~g~lLAsgs~--DG~I~vw~~~~~~~~~~~~--~~~~V~~l~Fs~dg~~LvS~s-~D 104 (1155)
..+.+..+-|... ..-|+|+|+|.+.++.+. +++|.++|..+.+.+...+ .......+.+. ++.|..+. .+
T Consensus 8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 8 IVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred CceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 3444444555544 468999999755554433 5799999999887776543 22233345554 45666655 57
Q ss_pred CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEec
Q 001109 105 NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCP 184 (1155)
Q Consensus 105 g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p 184 (1155)
+.+.++|.++.+.+.+++.. .-....+++|++.++++..+++|++ +|....+.. -+++.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~v--iD~~t~~v~---~~I~V--------------- 144 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYE--IDPHTFKLI---KKHNV--------------- 144 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEE--ECTTTCCEE---EEEEC---------------
T ss_pred CEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEE--EECCCCcEE---EEEEE---------------
Confidence 89999999999999988654 1123557789999998877776654 566553322 01110
Q ss_pred ccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEE-cCCeEEEEEccCCe
Q 001109 185 NHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVY-ANGLIILWDVSEDK 263 (1155)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~-~dG~I~lWd~~~~~ 263 (1155)
+ .. ..++. .++.+.+. + + ++.+.. .++.|.+-|..+++
T Consensus 145 -------g----------------~~------~~p~~--~~nele~~-d--g-------~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 145 -------K----------------YN------GHRVI--RLNELEYI-N--G-------EVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp -------E----------------ET------TEECC--CEEEEEEE-T--T-------EEEEEETTSSEEEEEETTTCC
T ss_pred -------C----------------CC------Ccccc--cceeEEEE-C--C-------EEEEecCCCCeEEEEECCCCc
Confidence 0 00 00100 11226665 3 3 344444 57899999999999
Q ss_pred EEEEecccccccccc-cccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeE-EEEEcCCcEEEEEcCCC
Q 001109 264 VVLVRGSKDLQLKTE-IVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVL-AVGYVDGDILLWNLRAA 335 (1155)
Q Consensus 264 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~l-asg~~DG~I~lWd~~s~ 335 (1155)
++....... +... ... ++ ........++|+ |++++| +++...+.|..-++...
T Consensus 184 V~~~I~~~g--~~~~~~~~------~~----------~~~~v~nGIa~~-~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 184 LLGWILLPN--LRKKLIDE------GF----------RDIDVLNGIAWD-QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEECHH--HHHHHHHT------TC----------TTCCCEEEEEEE-TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEEECCC--cccccccc------cc----------cccCceEEEEEc-CCCCEEEEECCCCCeEEEEEEecc
Confidence 887522100 0000 000 00 012346799999 898655 55557788888887654
No 249
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.97 E-value=0.0007 Score=78.83 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=82.7
Q ss_pred ceEEEEcCCCCEEEEEEcC------CeEEEEccCCceEEEEcCC-CC--C-EEEEEEEcCCcEEEEEe------------
Q 001109 45 ASILAFDHVQSLLAIGTQD------GRIKVIGGDNIEGLLVSPK-QL--A-FKHLEFLQNQGFLVSIS------------ 102 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~D------G~I~vw~~~~~~~~~~~~~-~~--~-V~~l~Fs~dg~~LvS~s------------ 102 (1155)
...+...|+| +++++..+ |.|.++|..+.+.+...+. .. . -..+.|+|+++.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~ 218 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK 218 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence 4457888999 76666665 7899999998887766542 11 1 22478899999888874
Q ss_pred -------cCCeEEEEECCCCceeeeecCC---CceeEEEE--ecCCCEEEEEeC------CCcEEEEEecC
Q 001109 103 -------SGNEIQLWDLEARRITSTLPWE---SNITAFSV--IFGTSYMYIGDE------YGMVYVLKYDT 155 (1155)
Q Consensus 103 -------~Dg~I~vWDl~t~~~~~~l~~~---~~Vtsva~--spd~~~l~~G~~------dG~V~vw~~d~ 155 (1155)
.+++|.+||+.+++.+.++... .....+.| +|+++++|++.+ +++|.+|.++.
T Consensus 219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 3789999999999888888753 23444545 999999999885 56888888875
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.90 E-value=0.00086 Score=72.63 Aligned_cols=124 Identities=10% Similarity=0.173 Sum_probs=86.6
Q ss_pred CCCCcceeeccCCCCCc--eEEEEcCCCCEEEEEEcCC--eEEEEccCCceEEEEcCCCCCE--EEEEEEcCCcEEEEEe
Q 001109 29 KDFDPRVTLHYGIPSTA--SILAFDHVQSLLAIGTQDG--RIKVIGGDNIEGLLVSPKQLAF--KHLEFLQNQGFLVSIS 102 (1155)
Q Consensus 29 ~~~~~~~~~~~G~~~~v--s~lafsp~g~lLAsgs~DG--~I~vw~~~~~~~~~~~~~~~~V--~~l~Fs~dg~~LvS~s 102 (1155)
..+.++++..+-|.... -.|.|+ ++.+..+++.+| +|+++|..+.+.+....-.... ..+.+. +..|..+.
T Consensus 27 ~~~~~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~lt 103 (262)
T 3nol_A 27 PIYDYQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLT 103 (262)
T ss_dssp CEEEEEEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred cccceEEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEE
Confidence 34556666667776666 669999 677777777776 9999999988877655433333 335554 45566555
Q ss_pred -cCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 103 -SGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 103 -~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
.++.+.++|.++.+.+.+++... ....+++|+..|++.+.++.| +.+|+.+.+
T Consensus 104 w~~~~v~v~D~~t~~~~~ti~~~~--eG~glt~dg~~L~~SdGs~~i--~~iDp~T~~ 157 (262)
T 3nol_A 104 WKNGLGFVWNIRNLRQVRSFNYDG--EGWGLTHNDQYLIMSDGTPVL--RFLDPESLT 157 (262)
T ss_dssp SSSSEEEEEETTTCCEEEEEECSS--CCCCEEECSSCEEECCSSSEE--EEECTTTCS
T ss_pred eeCCEEEEEECccCcEEEEEECCC--CceEEecCCCEEEEECCCCeE--EEEcCCCCe
Confidence 58899999999999999988653 224555788888887666655 556776533
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.82 E-value=0.0024 Score=68.48 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=85.7
Q ss_pred CCCCcceeeccCCCCCce--EEEEcCCCCEEEEEEcCC--eEEEEccCCceEEEEcCCCCCE--EEEEEEcCCcEEEEEe
Q 001109 29 KDFDPRVTLHYGIPSTAS--ILAFDHVQSLLAIGTQDG--RIKVIGGDNIEGLLVSPKQLAF--KHLEFLQNQGFLVSIS 102 (1155)
Q Consensus 29 ~~~~~~~~~~~G~~~~vs--~lafsp~g~lLAsgs~DG--~I~vw~~~~~~~~~~~~~~~~V--~~l~Fs~dg~~LvS~s 102 (1155)
..+.++++..+-|+.... -|.|++ +.+..+.+.+| .|+++|..+.+.+....-.... ..+.+. ++.|..+.
T Consensus 5 ~~~~~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~lt 81 (243)
T 3mbr_X 5 PTQGYRVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLT 81 (243)
T ss_dssp CBCCEEEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred cccceEEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEE
Confidence 345667777778876655 699997 66666666654 8999999988877655433333 344554 45555554
Q ss_pred -cCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCc
Q 001109 103 -SGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEG 158 (1155)
Q Consensus 103 -~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~ 158 (1155)
.++.+.++|.++.+.+.+++.... ...+++++..|++...++.| +.+|+.+.
T Consensus 82 w~~~~v~v~D~~tl~~~~ti~~~~~--Gwglt~dg~~L~vSdgs~~l--~~iDp~t~ 134 (243)
T 3mbr_X 82 WRNHEGFVYDLATLTPRARFRYPGE--GWALTSDDSHLYMSDGTAVI--RKLDPDTL 134 (243)
T ss_dssp SSSSEEEEEETTTTEEEEEEECSSC--CCEEEECSSCEEEECSSSEE--EEECTTTC
T ss_pred eeCCEEEEEECCcCcEEEEEeCCCC--ceEEeeCCCEEEEECCCCeE--EEEeCCCC
Confidence 689999999999999999886542 24455788888888776765 44577653
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.81 E-value=0.0032 Score=68.48 Aligned_cols=112 Identities=11% Similarity=-0.029 Sum_probs=74.7
Q ss_pred CceEEEEcCCCCEE-EEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCCceeee
Q 001109 44 TASILAFDHVQSLL-AIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEARRITST 120 (1155)
Q Consensus 44 ~vs~lafsp~g~lL-Asgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~~~~~~ 120 (1155)
.+..++|+|+++.| .+-..+++|.+++.++....... ........++|.++++.|+.++ ..+.|.++|++.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 46789999976544 45455789999988765432222 2224678999999877777665 467899999875432222
Q ss_pred ecCC-CceeEEEEecCCCEEEEEeCC---CcEEEEEecC
Q 001109 121 LPWE-SNITAFSVIFGTSYMYIGDEY---GMVYVLKYDT 155 (1155)
Q Consensus 121 l~~~-~~Vtsva~spd~~~l~~G~~d---G~V~vw~~d~ 155 (1155)
.... .....++++|++..||+.... +.|+++.+|.
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 2222 567899999988888877653 5565554443
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.77 E-value=0.0023 Score=69.21 Aligned_cols=168 Identities=12% Similarity=0.072 Sum_probs=108.2
Q ss_pred EEEEcCC--CCCEEEEEEEcCCcEEEEEecCC--eEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeC-CCcEEE
Q 001109 76 GLLVSPK--QLAFKHLEFLQNQGFLVSISSGN--EIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDE-YGMVYV 150 (1155)
Q Consensus 76 ~~~~~~~--~~~V~~l~Fs~dg~~LvS~s~Dg--~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~-dG~V~v 150 (1155)
.+..++| ..-...|.|+ ++...++.+.+| .|++.|+++++.+.++..........+.++++.|++.+. ++.+
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v-- 109 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG-- 109 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE--
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE--
Confidence 3444444 4556899999 666666777766 899999999999999887766666666667888888775 4444
Q ss_pred EEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEE
Q 001109 151 LKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLL 230 (1155)
Q Consensus 151 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~ 230 (1155)
|.||..+.++.. +++. ...-++ ++
T Consensus 110 ~v~D~~t~~~~~---ti~~-----------------------------------------------~~eG~g-----lt- 133 (262)
T 3nol_A 110 FVWNIRNLRQVR---SFNY-----------------------------------------------DGEGWG-----LT- 133 (262)
T ss_dssp EEEETTTCCEEE---EEEC-----------------------------------------------SSCCCC-----EE-
T ss_pred EEEECccCcEEE---EEEC-----------------------------------------------CCCceE-----Ee-
Confidence 556766544330 1110 001122 43
Q ss_pred eecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEE
Q 001109 231 QFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCW 310 (1155)
Q Consensus 231 ~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~ 310 (1155)
+++ .+|+....++.|.++|..+.+.+..... .. .+. .-..+..+.|
T Consensus 134 -~dg--------~~L~~SdGs~~i~~iDp~T~~v~~~I~V-----~~---------~g~-----------~~~~lNELe~ 179 (262)
T 3nol_A 134 -HND--------QYLIMSDGTPVLRFLDPESLTPVRTITV-----TA---------HGE-----------ELPELNELEW 179 (262)
T ss_dssp -ECS--------SCEEECCSSSEEEEECTTTCSEEEEEEC-----EE---------TTE-----------ECCCEEEEEE
T ss_pred -cCC--------CEEEEECCCCeEEEEcCCCCeEEEEEEe-----cc---------CCc-----------cccccceeEE
Confidence 442 3466666678899999999887764211 00 000 1133456788
Q ss_pred EecCCCeEEEEEcCCcEEEEEcCCCCCc
Q 001109 311 ASNDGSVLAVGYVDGDILLWNLRAAAST 338 (1155)
Q Consensus 311 s~pdG~~lasg~~DG~I~lWd~~s~~~~ 338 (1155)
. +|+..|..+.+..|.+.|..++...
T Consensus 180 ~--~G~lyan~w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 180 V--DGEIFANVWQTNKIVRIDPETGKVT 205 (262)
T ss_dssp E--TTEEEEEETTSSEEEEECTTTCBEE
T ss_pred E--CCEEEEEEccCCeEEEEECCCCcEE
Confidence 6 8887777778899999999988653
No 254
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.72 E-value=0.0014 Score=78.80 Aligned_cols=95 Identities=8% Similarity=0.068 Sum_probs=76.2
Q ss_pred CCCCEEEEEEc-CCeEEEEccCCceEEE--EcCCCCCEEEEEE-E-cCCcEEEEEe------------------cCCeEE
Q 001109 52 HVQSLLAIGTQ-DGRIKVIGGDNIEGLL--VSPKQLAFKHLEF-L-QNQGFLVSIS------------------SGNEIQ 108 (1155)
Q Consensus 52 p~g~lLAsgs~-DG~I~vw~~~~~~~~~--~~~~~~~V~~l~F-s-~dg~~LvS~s------------------~Dg~I~ 108 (1155)
|||++|.+... +++|.+.|.+..++.. ..+.......++| + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48988877665 4689999999987655 5555556889998 5 9999999884 246899
Q ss_pred EEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCC
Q 001109 109 LWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYG 146 (1155)
Q Consensus 109 vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG 146 (1155)
++|.++.+.+.++...+...-++++|+|+++++.+.+.
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~s 216 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNS 216 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCc
Confidence 99999999988887544667789999999999998664
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.71 E-value=0.0039 Score=67.48 Aligned_cols=169 Identities=14% Similarity=0.044 Sum_probs=108.7
Q ss_pred eEEEEcCC--CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEE
Q 001109 75 EGLLVSPK--QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLK 152 (1155)
Q Consensus 75 ~~~~~~~~--~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~ 152 (1155)
+.+..++| ......|.|+. +...++.+.+|.|++.|+++++.+.++ .........+.++++.|+..+.... .+|.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~-~v~V 120 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEG-LLFT 120 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSC-EEEE
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCC-EEEE
Confidence 33444444 55678999984 466677788899999999999998888 6555555555667777777764433 3466
Q ss_pred ecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEee
Q 001109 153 YDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQF 232 (1155)
Q Consensus 153 ~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p 232 (1155)
||..+.++.. +++. ...-++ ++ +
T Consensus 121 ~D~~Tl~~~~---ti~~-----------------------------------------------~~eGwG-----Lt--~ 143 (268)
T 3nok_A 121 WSGMPPQRER---TTRY-----------------------------------------------SGEGWG-----LC--Y 143 (268)
T ss_dssp EETTTTEEEE---EEEC-----------------------------------------------SSCCCC-----EE--E
T ss_pred EECCcCcEEE---EEeC-----------------------------------------------CCceeE-----Ee--c
Confidence 6776654431 1110 001123 44 3
Q ss_pred cccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEe
Q 001109 233 QKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWAS 312 (1155)
Q Consensus 233 ~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~ 312 (1155)
+ + .+|+.+..++.|.++|..+.+.+..... .. .+ ..-..+..+.|.
T Consensus 144 D--g------~~L~vSdGs~~l~~iDp~T~~v~~~I~V-----~~---------~g-----------~~v~~lNeLe~~- 189 (268)
T 3nok_A 144 W--N------GKLVRSDGGTMLTFHEPDGFALVGAVQV-----KL---------RG-----------QPVELINELECA- 189 (268)
T ss_dssp E--T------TEEEEECSSSEEEEECTTTCCEEEEEEC-----EE---------TT-----------EECCCEEEEEEE-
T ss_pred C--C------CEEEEECCCCEEEEEcCCCCeEEEEEEe-----CC---------CC-----------cccccccccEEe-
Confidence 3 2 4577766789999999999888764211 00 00 012345678886
Q ss_pred cCCCeEEEEEcCCcEEEEEcCCCCCc
Q 001109 313 NDGSVLAVGYVDGDILLWNLRAAAST 338 (1155)
Q Consensus 313 pdG~~lasg~~DG~I~lWd~~s~~~~ 338 (1155)
+|+..|..+.+..|.+-|..+++..
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATGTVV 214 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTCBEE
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcEE
Confidence 8887777777889999999988653
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=0.26 Score=62.30 Aligned_cols=114 Identities=12% Similarity=0.179 Sum_probs=72.1
Q ss_pred cCCC-CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCC---------CCCEEEEEEEcCCcEEEEEecCCeEE
Q 001109 39 YGIP-STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPK---------QLAFKHLEFLQNQGFLVSISSGNEIQ 108 (1155)
Q Consensus 39 ~G~~-~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~---------~~~V~~l~Fs~dg~~LvS~s~Dg~I~ 108 (1155)
.|.+ ..|.+|+-|++|. |=.|+.+| +..||....... ..+. ...|.+|...++|..|-.++.++-+.
T Consensus 14 ~gLs~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~f~~~-~~~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~ 90 (781)
T 3v9f_A 14 QGLSNNYVLSITQDKQGF-LWFATEEG-LNKFDGTRFITY-YKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLN 90 (781)
T ss_dssp GTCSCSBEEEEEECTTSC-EEEEESSC-EEEECSSSEEEE-CCCSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEE
T ss_pred CCCccCEeEEEEECCCCC-EEEccCCc-CccccCCceEEE-EcCCCCCccccccccccceEEEcCCCCEEEEEeCCCCcc
Confidence 4655 4799999999985 55778888 667876654332 2111 23588888888765255566665699
Q ss_pred EEECCCCceeeee-c-------CCCceeEEEEec--CCCEEEEEe-CCCcEEEEEecCCCce
Q 001109 109 LWDLEARRITSTL-P-------WESNITAFSVIF--GTSYMYIGD-EYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 109 vWDl~t~~~~~~l-~-------~~~~Vtsva~sp--d~~~l~~G~-~dG~V~vw~~d~~~~~ 159 (1155)
.||..+++..... . ....|+++.... ++. |.+|+ ..| + +.|+...++
T Consensus 91 ~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~~g-l--~~~~~~~~~ 148 (781)
T 3v9f_A 91 AYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYYRG-I--EYLDIATGK 148 (781)
T ss_dssp EEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESSSC-E--EEEETTTTE
T ss_pred eECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC-EEEEECCCC-e--eEEECCCCe
Confidence 9999887654321 1 013688888877 554 55677 445 4 345554433
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.65 E-value=0.0088 Score=64.12 Aligned_cols=169 Identities=14% Similarity=0.054 Sum_probs=108.8
Q ss_pred eEEEEcCC--CCCEEEEEEEcCCcEEEEEecC--CeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeC-CCcEE
Q 001109 75 EGLLVSPK--QLAFKHLEFLQNQGFLVSISSG--NEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDE-YGMVY 149 (1155)
Q Consensus 75 ~~~~~~~~--~~~V~~l~Fs~dg~~LvS~s~D--g~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~-dG~V~ 149 (1155)
+.+..++| ..-...|.|++ +...++.+.+ ..|++.|+++++.+.++..........+.+.++.|+..+. ++.+
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v- 87 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG- 87 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE-
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE-
Confidence 34444444 56788999997 4556666665 4899999999999999887766666666666777877764 4544
Q ss_pred EEEecCCCceeeccceeccCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEE
Q 001109 150 VLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRL 229 (1155)
Q Consensus 150 vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~ 229 (1155)
|.||..+.++.. +++. ...-++ ++
T Consensus 88 -~v~D~~tl~~~~---ti~~-----------------------------------------------~~~Gwg-----lt 111 (243)
T 3mbr_X 88 -FVYDLATLTPRA---RFRY-----------------------------------------------PGEGWA-----LT 111 (243)
T ss_dssp -EEEETTTTEEEE---EEEC-----------------------------------------------SSCCCE-----EE
T ss_pred -EEEECCcCcEEE---EEeC-----------------------------------------------CCCceE-----Ee
Confidence 556766544431 1110 001122 43
Q ss_pred EeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEE
Q 001109 230 LQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLC 309 (1155)
Q Consensus 230 ~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~ 309 (1155)
+++ .+|+.+..++.|.++|..+.+.+..... .. .+ ..-..+..+.
T Consensus 112 --~dg--------~~L~vSdgs~~l~~iDp~t~~~~~~I~V-----~~---------~g-----------~~~~~lNeLe 156 (243)
T 3mbr_X 112 --SDD--------SHLYMSDGTAVIRKLDPDTLQQVGSIKV-----TA---------GG-----------RPLDNLNELE 156 (243)
T ss_dssp --ECS--------SCEEEECSSSEEEEECTTTCCEEEEEEC-----EE---------TT-----------EECCCEEEEE
T ss_pred --eCC--------CEEEEECCCCeEEEEeCCCCeEEEEEEE-----cc---------CC-----------cccccceeeE
Confidence 442 3566666789999999999887764211 00 00 0123456777
Q ss_pred EEecCCCeEEEEEcCCcEEEEEcCCCCCc
Q 001109 310 WASNDGSVLAVGYVDGDILLWNLRAAAST 338 (1155)
Q Consensus 310 ~s~pdG~~lasg~~DG~I~lWd~~s~~~~ 338 (1155)
|. +|+..|..+.+..|.+.|..++...
T Consensus 157 ~~--~G~lyanvw~s~~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 157 WV--NGELLANVWLTSRIARIDPASGKVV 183 (243)
T ss_dssp EE--TTEEEEEETTTTEEEEECTTTCBEE
T ss_pred Ee--CCEEEEEECCCCeEEEEECCCCCEE
Confidence 75 8887777777889999999988653
No 258
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.52 E-value=0.0044 Score=67.61 Aligned_cols=158 Identities=14% Similarity=0.002 Sum_probs=102.3
Q ss_pred ccCCcCcEEEEEEC--CCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEE-eCCCeEEEEEec
Q 001109 546 EDYLVERLYIAGYR--DGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIG-SSSGLVWLYNLI 622 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~--DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasg-s~dG~V~lwd~~ 622 (1155)
++++++.++++.+. +++|++.|..+++......+. .+ .-...+++. +..|.++ -.++.|.+||..
T Consensus 27 ~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~---------~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 27 VYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD---------DS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp EECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC---------TT-CCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred EEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC---------CC-cceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence 67788888887764 689999999988743211111 11 122345554 4455444 457899999988
Q ss_pred cCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCC
Q 001109 623 KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSN 702 (1155)
Q Consensus 623 ~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~ 702 (1155)
+.+.. ..+.-.... ...+++||++|.++..++.|.++|..+.+++....+ ..
T Consensus 95 t~~v~-------------------------~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V-g~ 146 (266)
T 2iwa_A 95 TLSNI-------------------------KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV-KY 146 (266)
T ss_dssp TTEEE-------------------------EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC-EE
T ss_pred CCcEE-------------------------EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE-CC
Confidence 64321 111110011 134677898888888889999999999888876654 11
Q ss_pred CCCC---eeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeec
Q 001109 703 SNSP---VLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSI 766 (1155)
Q Consensus 703 h~~~---V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~ 766 (1155)
...+ +..+.|. ||++.+....++.|.++|..||+++...++
T Consensus 147 ~~~p~~~~nele~~-----------------------dg~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 147 NGHRVIRLNELEYI-----------------------NGEVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp TTEECCCEEEEEEE-----------------------TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred CCcccccceeEEEE-----------------------CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 1222 4567775 455444444688999999999999998854
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.52 E-value=0.0039 Score=67.49 Aligned_cols=119 Identities=9% Similarity=0.102 Sum_probs=79.2
Q ss_pred ceeeccCCCCCc--eEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEe-cCCeEEE
Q 001109 34 RVTLHYGIPSTA--SILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSIS-SGNEIQL 109 (1155)
Q Consensus 34 ~~~~~~G~~~~v--s~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~v 109 (1155)
+++..+-|.... ..|.|+. +.+..+.+.+|.|+++|..+.+.+... +....-..+.+. +..|..+. .++.+.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEE
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEE
Confidence 344445665554 5788984 677777778899999998876554433 222222345554 44455544 6899999
Q ss_pred EECCCCceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCCCce
Q 001109 110 WDLEARRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGK 159 (1155)
Q Consensus 110 WDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~ 159 (1155)
+|.++.+.+.+++....- ..+++|+..|++...++.| +.+|+.+.+
T Consensus 121 ~D~~Tl~~~~ti~~~~eG--wGLt~Dg~~L~vSdGs~~l--~~iDp~T~~ 166 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGEG--WGLCYWNGKLVRSDGGTML--TFHEPDGFA 166 (268)
T ss_dssp EETTTTEEEEEEECSSCC--CCEEEETTEEEEECSSSEE--EEECTTTCC
T ss_pred EECCcCcEEEEEeCCCce--eEEecCCCEEEEECCCCEE--EEEcCCCCe
Confidence 999999999998865332 3445788999988766655 455776543
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.50 E-value=0.023 Score=63.43 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=65.9
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEE-EEcCC-------------------CCCEEEEEEEcCCcEEEEEe
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGL-LVSPK-------------------QLAFKHLEFLQNQGFLVSIS 102 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~-~~~~~-------------------~~~V~~l~Fs~dg~~LvS~s 102 (1155)
.....++++++|++|.++..++.|..|+..+.... +.... ...+..++|.++++.|+.++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 34677899999998888999999999987764332 22111 12478899998445677676
Q ss_pred cCCeEEEEECCCCcee--eee-cC--CCceeEEEEec-CCCEEEE
Q 001109 103 SGNEIQLWDLEARRIT--STL-PW--ESNITAFSVIF-GTSYMYI 141 (1155)
Q Consensus 103 ~Dg~I~vWDl~t~~~~--~~l-~~--~~~Vtsva~sp-d~~~l~~ 141 (1155)
..+.|.++|..++... ... .. ......+++++ +|++.++
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~ 143 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFT 143 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEE
Confidence 6667899998766431 111 11 13467899999 8864443
No 261
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.41 E-value=0.008 Score=69.98 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=77.4
Q ss_pred ccCCcCcEEEEEE-------------------CCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEE--ecCC
Q 001109 546 EDYLVERLYIAGY-------------------RDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEF--CSVT 604 (1155)
Q Consensus 546 ~~s~~~~lLaTgs-------------------~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~laf--spdg 604 (1155)
-++|++++++|.. .+.+|.+||+.++++ +.++. +.........|.| +|++
T Consensus 194 ~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~--~~tI~-------vg~~g~~P~~i~f~~~Pdg 264 (462)
T 2ece_A 194 WWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR--IHSLT-------LGEENRMALELRPLHDPTK 264 (462)
T ss_dssp EEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE--EEEEE-------SCTTEEEEEEEEECSSTTC
T ss_pred EECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE--eeEEe-------cCCCCCccceeEeeECCCC
Confidence 3477888787774 478999999987653 23332 1111123445656 9999
Q ss_pred CeEEEEeC------CCeEEEEEeccCccccceeeeccCCceEEEecCC--CCCce--eEEeecCCCCeEEEEEcCCCCEE
Q 001109 605 LNLAIGSS------SGLVWLYNLIKSSNEETLNLVTETGKEVHILPGG--DGPQC--KALFSVLNSPICNLKFSNFGARL 674 (1155)
Q Consensus 605 ~~Lasgs~------dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~--~g~~~--~~~l~~h~~~VtslafSpdg~~L 674 (1155)
+++.+++. +++|.+|..+.+... ..+.++ +... .+... ...|.+-......|.+||||++|
T Consensus 265 ~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-~~~vId--------i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL 335 (462)
T 2ece_A 265 LMGFINMVVSLKDLSSSIWLWFYEDGKWN-AEKVIE--------IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL 335 (462)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEETTEEE-EEEEEE--------ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred CEEEEEEeeeccCCCceEEEEEecCCcee-EEEEEe--------CCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence 99887774 679988888653211 000110 0000 00000 00000112357889999999998
Q ss_pred EEEeC-CCcEEEEecCC---ccEEEEe
Q 001109 675 AVGFE-CSQVAMLDIST---FSVLFIT 697 (1155)
Q Consensus 675 AsGs~-Dg~V~lWDi~~---~~~l~~~ 697 (1155)
-++.. .+.|.++|+.+ ++++.+.
T Consensus 336 YVSnrg~d~VavfdV~d~~~~~lv~~I 362 (462)
T 2ece_A 336 YLSLWGIGEVRQYDISNPFKPVLTGKV 362 (462)
T ss_dssp EEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEEE
Confidence 87766 67899999964 3444443
No 262
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.40 E-value=0.00068 Score=81.56 Aligned_cols=113 Identities=11% Similarity=0.002 Sum_probs=84.3
Q ss_pred CCceEEEE-c-CCCCEEEEEE------------------cCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEe
Q 001109 43 STASILAF-D-HVQSLLAIGT------------------QDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSIS 102 (1155)
Q Consensus 43 ~~vs~laf-s-p~g~lLAsgs------------------~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s 102 (1155)
..+..++| + |+++++.+++ .++.|.++|..+.+...+..-...-..++++|+|+++++.+
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~ 213 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS 213 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEe
Confidence 45778898 5 9999998885 24689999999888776643212346788999999999888
Q ss_pred cCC--------------------------------------eEEEEECCC--Cce-eeeecCCCceeEEEEecCCCEEEE
Q 001109 103 SGN--------------------------------------EIQLWDLEA--RRI-TSTLPWESNITAFSVIFGTSYMYI 141 (1155)
Q Consensus 103 ~Dg--------------------------------------~I~vWDl~t--~~~-~~~l~~~~~Vtsva~spd~~~l~~ 141 (1155)
.+. .|.|.|..+ ++. +..++......++.++|||+++++
T Consensus 214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence 442 488888887 545 566665566788999999999888
Q ss_pred Ee-CCCcEEEEEecC
Q 001109 142 GD-EYGMVYVLKYDT 155 (1155)
Q Consensus 142 G~-~dG~V~vw~~d~ 155 (1155)
.+ .+.+|.|++++.
T Consensus 294 ~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTR 308 (595)
T ss_dssp ECTTSSBEEEEEGGG
T ss_pred eCCCCCeEEEEECcc
Confidence 76 466788876653
No 263
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.15 E-value=0.0076 Score=75.08 Aligned_cols=193 Identities=10% Similarity=0.024 Sum_probs=108.3
Q ss_pred ccCCcCcEEEEEECCC-------------------cEEEEeCCCCCeeeeeeeCCC-cCccccCCCCCCeEEEEEecCCC
Q 001109 546 EDYLVERLYIAGYRDG-------------------STRIWDATYPTLSLIHVFGSE-LPGIRTATESESVSALEFCSVTL 605 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~Dg-------------------tVrlWD~~~~~l~~l~~l~~~-~~~i~~~gh~~~V~~lafspdg~ 605 (1155)
++.+..++++.+..++ +|..+|..+++.. ...... -..... ....+.....+..+|+
T Consensus 236 a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~--W~~~~~~~~~wd~-~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 236 AYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA--WHYQVTPGDSWDF-TATQQITLAELNIDGK 312 (668)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE--EEEESSTTCCSCC-CCCSCEEEEEEEETTE
T ss_pred EEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee--eEeecCCCccccc-cCCCCcEEEEeccCCc
Confidence 5666667777777776 3999999998732 222110 000000 0112444445556776
Q ss_pred ---eEEEEeCCCeEEEEEeccCccccceeeec---------cCCceEEEecCC-CCCceeEEeecCCC--CeEEEEEcCC
Q 001109 606 ---NLAIGSSSGLVWLYNLIKSSNEETLNLVT---------ETGKEVHILPGG-DGPQCKALFSVLNS--PICNLKFSNF 670 (1155)
Q Consensus 606 ---~Lasgs~dG~V~lwd~~~~~~~~~~~~v~---------~~~~~~~~~~~~-~g~~~~~~l~~h~~--~VtslafSpd 670 (1155)
.|++++.+|.++++|..+++......+.. .+..-+..-... ++.. ...+.+..+ .-..++|+|+
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~-~~~~p~~~G~~~w~~~a~dp~ 391 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEP-IVMWPSPFGAHNWHSMSFNPG 391 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSC-EEESSCTTCSSCSSCCEEETT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCe-eEECCCCccccCCCcceECCC
Confidence 68899999999999988875421111110 000000000000 0000 000000000 0112677777
Q ss_pred CCEEEEE------------------------------------eCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEee
Q 001109 671 GARLAVG------------------------------------FECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKS 714 (1155)
Q Consensus 671 g~~LAsG------------------------------------s~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~ 714 (1155)
..++.+. ..+|.|.-||+.+++.+.+... ..++....+.
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~~~~~- 466 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY----PTHWNGGTLS- 466 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEE-
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC----CCCCcCceeE-
Confidence 6655431 2348899999999999877543 2233322333
Q ss_pred cCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeeeeccc
Q 001109 715 LSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSRSIHH 768 (1155)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~~ 768 (1155)
..+.+|++++.|+.|++||..+|+++.......
T Consensus 467 ---------------------t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 467 ---------------------TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp ---------------------ETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ---------------------eCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 347789999999999999999999999886543
No 264
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.14 E-value=0.055 Score=58.53 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=83.8
Q ss_pred cCCCCCceEEEEcCCCC-EEEEEEcCCeEEEEccCCceEEEEc--CCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC
Q 001109 39 YGIPSTASILAFDHVQS-LLAIGTQDGRIKVIGGDNIEGLLVS--PKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR 115 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~~~~~~~--~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~ 115 (1155)
.|....++.|+|+|+++ +.|+...++.|..++.. ...+... ....-...|++.+++.++++.-.++.+.+.++...
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 47778899999999765 66667788999999987 4444433 33356788999998776666546678989887654
Q ss_pred ce---eeeecC-------CCceeEEEEecCCCEEEEEeCCCcEEEEEec
Q 001109 116 RI---TSTLPW-------ESNITAFSVIFGTSYMYIGDEYGMVYVLKYD 154 (1155)
Q Consensus 116 ~~---~~~l~~-------~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d 154 (1155)
.. +..... ......++++|.++.|+++.+.....+|.++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 42 222211 1346899999999999998888777788777
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.13 E-value=0.042 Score=60.92 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=70.3
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC--CeEEEEECCCCceeee
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG--NEIQLWDLEARRITST 120 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D--g~I~vWDl~t~~~~~~ 120 (1155)
.....++++|+|+++++-..+++|..|+..+..... .........++|.++|..+++.... ..|..+|..+++....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~-~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIH-ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEE-EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEE-EeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 567889999999988887788999999987643322 2223468899999998755544332 2477778788775432
Q ss_pred ec--CCCceeEEEEecCCCEEEEEe-CCCcEEEEEecCCC
Q 001109 121 LP--WESNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEE 157 (1155)
Q Consensus 121 l~--~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~ 157 (1155)
.. .......+++.+++. +++.. .+|.| |.+|...
T Consensus 111 ~~~~~~~~~~g~~~~~~~~-~~v~d~~~g~i--~~~d~~~ 147 (306)
T 2p4o_A 111 LTLPDAIFLNGITPLSDTQ-YLTADSYRGAI--WLIDVVQ 147 (306)
T ss_dssp EECTTCSCEEEEEESSSSE-EEEEETTTTEE--EEEETTT
T ss_pred EeCCCccccCcccccCCCc-EEEEECCCCeE--EEEeCCC
Confidence 22 112334455555544 44444 47755 5566543
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.06 E-value=0.012 Score=74.30 Aligned_cols=117 Identities=10% Similarity=-0.036 Sum_probs=75.7
Q ss_pred cCCCC-CceEEEEc-CCCCEEEEEEcC-C----eEEEEccCCc-eEEEEcCCCCCEEEEEEEcCCcEEEEEecC-----C
Q 001109 39 YGIPS-TASILAFD-HVQSLLAIGTQD-G----RIKVIGGDNI-EGLLVSPKQLAFKHLEFLQNQGFLVSISSG-----N 105 (1155)
Q Consensus 39 ~G~~~-~vs~lafs-p~g~lLAsgs~D-G----~I~vw~~~~~-~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D-----g 105 (1155)
.||.. .+...+|| |||++||.+... | +|++++..+. +.+.. .-......+.|+|||+.|+.+..| .
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLREN 247 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCC
Confidence 35544 67889999 999999976643 3 5999998876 52210 001112357899999888877655 3
Q ss_pred eEEEEECCCCce----eeeecCCCceeEEEEecCCCEEEEEeCC-CcEEEEEecCC
Q 001109 106 EIQLWDLEARRI----TSTLPWESNITAFSVIFGTSYMYIGDEY-GMVYVLKYDTE 156 (1155)
Q Consensus 106 ~I~vWDl~t~~~----~~~l~~~~~Vtsva~spd~~~l~~G~~d-G~V~vw~~d~~ 156 (1155)
.|.+|++.++.. +..-........+.++|||++|+....+ +.-.+|.+|..
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 688899987642 2221223456778999999988876533 33345555554
No 267
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.05 E-value=0.046 Score=59.12 Aligned_cols=110 Identities=15% Similarity=0.045 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCCEEE-EEEcCCeEEEEccCCceE-EEEcCCCCCEEEEEEEcCCcEEEEEecC---CeEEEEECCCCce
Q 001109 43 STASILAFDHVQSLLA-IGTQDGRIKVIGGDNIEG-LLVSPKQLAFKHLEFLQNQGFLVSISSG---NEIQLWDLEARRI 117 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLA-sgs~DG~I~vw~~~~~~~-~~~~~~~~~V~~l~Fs~dg~~LvS~s~D---g~I~vWDl~t~~~ 117 (1155)
..+..++++|++..|. +-..+++|.+++.++... .+..........++|+|++++|+.+... +.|.+++++...
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~- 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN- 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-
Confidence 4678899999765544 445568999998765432 2222222457899999977777766643 689899986433
Q ss_pred eeeec--CCCceeEEEEecCCCEEEEEeCC-CcEEEEEe
Q 001109 118 TSTLP--WESNITAFSVIFGTSYMYIGDEY-GMVYVLKY 153 (1155)
Q Consensus 118 ~~~l~--~~~~Vtsva~spd~~~l~~G~~d-G~V~vw~~ 153 (1155)
...+. .-.....++++|++.+||++... +.|+++++
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence 22221 22467899999999888887754 55655443
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.84 E-value=0.041 Score=67.26 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=44.9
Q ss_pred CCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCc
Q 001109 680 CSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGH 759 (1155)
Q Consensus 680 Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~ 759 (1155)
+|.|.-||+.+++.+.+... ..++.+-... ..+.+++.++.|+.++.||..||+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~----~~~~~~g~~~----------------------tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKE----HLPLWAGVLA----------------------TAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEE----SSCCCSCCEE----------------------ETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEecC----CCCCcccceE----------------------eCCCEEEEECCCCcEEEEECCCCC
Confidence 68899999999998876543 1122111111 236678889999999999999999
Q ss_pred eeeeeecc
Q 001109 760 ILFSRSIH 767 (1155)
Q Consensus 760 ~l~~~~~~ 767 (1155)
.+......
T Consensus 519 ~lW~~~~~ 526 (582)
T 1flg_A 519 ELWKFQTG 526 (582)
T ss_dssp EEEEEECS
T ss_pred EEEEecCC
Confidence 99988553
No 269
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.83 E-value=0.017 Score=64.06 Aligned_cols=102 Identities=9% Similarity=0.031 Sum_probs=67.9
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeee
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTL 121 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l 121 (1155)
..+.+++++++|. |.+|+.++.|..|+.. .+.+.... ....+..+.+.+++. |..++ +.|..+| .+++....+
T Consensus 137 ~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~ 210 (330)
T 3hxj_A 137 AIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNF 210 (330)
T ss_dssp CCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEE
T ss_pred ceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEE
Confidence 3466778888887 4567888999999988 44433322 233455666766754 55555 8899999 777766665
Q ss_pred cCC-CceeEEEEecCCCEEEEEeCCCcEEEE
Q 001109 122 PWE-SNITAFSVIFGTSYMYIGDEYGMVYVL 151 (1155)
Q Consensus 122 ~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw 151 (1155)
... ..+.++.+++++. |++|+.++.+..+
T Consensus 211 ~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~ 240 (330)
T 3hxj_A 211 YAGYWTVTRPAISEDGT-IYVTSLDGHLYAI 240 (330)
T ss_dssp CCSSCCCSCCEECTTSC-EEEEETTTEEEEE
T ss_pred ccCCcceeceEECCCCe-EEEEcCCCeEEEE
Confidence 543 5678888888774 5667777766444
No 270
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.81 E-value=0.077 Score=64.62 Aligned_cols=105 Identities=13% Similarity=0.070 Sum_probs=65.4
Q ss_pred CEEEEEEc------CCeEEEEccCCceEEEEcCCCCCE---------------------------------------EEE
Q 001109 55 SLLAIGTQ------DGRIKVIGGDNIEGLLVSPKQLAF---------------------------------------KHL 89 (1155)
Q Consensus 55 ~lLAsgs~------DG~I~vw~~~~~~~~~~~~~~~~V---------------------------------------~~l 89 (1155)
..+.+++. +|.|..+|..+++.+.......+. ..+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 45556655 789999999887776654221111 135
Q ss_pred EEEcCCcEEEEEec------------C----CeEEEEECCCCceeeeecCC----------CceeEEEEecCCC---EEE
Q 001109 90 EFLQNQGFLVSISS------------G----NEIQLWDLEARRITSTLPWE----------SNITAFSVIFGTS---YMY 140 (1155)
Q Consensus 90 ~Fs~dg~~LvS~s~------------D----g~I~vWDl~t~~~~~~l~~~----------~~Vtsva~spd~~---~l~ 140 (1155)
++.++.+.++.++. | +.|..+|.++|+.+..++.. ....-+...++|+ .++
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~ 320 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS 320 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence 67776666666553 2 36999999999988776532 1111223335774 678
Q ss_pred EEeCCCcEEEEEecCCCceee
Q 001109 141 IGDEYGMVYVLKYDTEEGKLI 161 (1155)
Q Consensus 141 ~G~~dG~V~vw~~d~~~~~l~ 161 (1155)
+++.+|.+++ +|..++++.
T Consensus 321 ~~~~~G~l~~--lD~~tG~~~ 339 (571)
T 2ad6_A 321 HIDRNGILYT--LNRENGNLI 339 (571)
T ss_dssp EECTTSEEEE--EETTTCCEE
T ss_pred EeCCCcEEEE--EECCCCCEE
Confidence 8999997755 466666554
No 271
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.78 E-value=0.11 Score=57.41 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=90.6
Q ss_pred cEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCCeEEEEEeccCcccccee
Q 001109 552 RLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLN 631 (1155)
Q Consensus 552 ~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~ 631 (1155)
..+..|+.++.|..+|.. +... .... .+...+.++.+.+++. |.+|+.++.|..|+.. +...
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~~~--~~~~---------~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~---- 169 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GTEK--WRFK---------TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEK---- 169 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SCEE--EEEE---------CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEE----
T ss_pred CEEEEEecCCEEEEEcCC-CCEE--EEEc---------CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEe----
Confidence 345667788999999988 5522 2221 1112456667777776 6668888999999876 3210
Q ss_pred eeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEE
Q 001109 632 LVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLA 711 (1155)
Q Consensus 632 ~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~sla 711 (1155)
..+......+.++.+.++|...+ |+ +.|..|| .++..+..... ....+.+++
T Consensus 170 ---------------------~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~---~~~~~~~~~ 221 (330)
T 3hxj_A 170 ---------------------WRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA---GYWTVTRPA 221 (330)
T ss_dssp ---------------------EEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC---SSCCCSCCE
T ss_pred ---------------------EEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc---CCcceeceE
Confidence 11122334566778888887554 44 7799999 67776665432 234455555
Q ss_pred EeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 712 VKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 712 fs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
+. ++| .|+.++.++.|..+|. +|+.+...
T Consensus 222 ~~----------------------~~g-~l~v~t~~~gl~~~~~-~g~~~~~~ 250 (330)
T 3hxj_A 222 IS----------------------EDG-TIYVTSLDGHLYAINP-DGTEKWRF 250 (330)
T ss_dssp EC----------------------TTS-CEEEEETTTEEEEECT-TSCEEEEE
T ss_pred EC----------------------CCC-eEEEEcCCCeEEEECC-CCCEeEEe
Confidence 54 455 4677888889999984 67766554
No 272
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.76 E-value=0.086 Score=58.74 Aligned_cols=110 Identities=11% Similarity=0.021 Sum_probs=69.0
Q ss_pred CceEEEEcC-CCCEEEEEEcCCeEEEEccCCceEE-EEc--CC--CCCEEEEEEEc-CCcEEEEEec-------------
Q 001109 44 TASILAFDH-VQSLLAIGTQDGRIKVIGGDNIEGL-LVS--PK--QLAFKHLEFLQ-NQGFLVSISS------------- 103 (1155)
Q Consensus 44 ~vs~lafsp-~g~lLAsgs~DG~I~vw~~~~~~~~-~~~--~~--~~~V~~l~Fs~-dg~~LvS~s~------------- 103 (1155)
.+..+++++ +|+++ ++...+.|.+++..+.+.. +.. .. ......+++.+ +|...++-..
T Consensus 81 ~p~gi~~~~~~g~l~-v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEE-EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEE-EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 477899998 66554 4544555888887754321 111 11 13467899999 8765555422
Q ss_pred ----CCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeC-CCcEEEEEec
Q 001109 104 ----GNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDE-YGMVYVLKYD 154 (1155)
Q Consensus 104 ----Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d 154 (1155)
++.|..||..+++.......-.....++++|++++|+++.. ++.|++++++
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~ 215 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLE 215 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred ccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 36788999887764332222234567899999998888754 4666555443
No 273
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.70 E-value=0.066 Score=65.22 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=45.7
Q ss_pred CCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCC
Q 001109 679 ECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTG 758 (1155)
Q Consensus 679 ~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG 758 (1155)
.+|.|..||+.+++.+.+... ..++.+..+. ..+.++++++.|+.|.+||..||
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~----~~~~~~~~~~----------------------t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWE----KFAAWGGTLY----------------------TKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEE----SSCCCSBCEE----------------------ETTTEEEEECTTSEEEEEETTTC
T ss_pred CCCeEEEEECCCCCEEEEecC----CCCccceeEE----------------------ECCCEEEEEcCCCeEEEEECCCC
Confidence 357899999999988876542 1222222222 23567888999999999999999
Q ss_pred ceeeeeeccc
Q 001109 759 HILFSRSIHH 768 (1155)
Q Consensus 759 ~~l~~~~~~~ 768 (1155)
+++....+..
T Consensus 496 ~~lw~~~~~~ 505 (571)
T 2ad6_A 496 KELWNFKMPS 505 (571)
T ss_dssp CEEEEEECSS
T ss_pred CEEEEEeCCC
Confidence 9999886544
No 274
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.70 E-value=0.073 Score=66.17 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=59.0
Q ss_pred ceEEEEcCCCCEEEEEEcCCe-------------------EEEEccCCceEEEEcC---CC-------CCEEEEEEEcCC
Q 001109 45 ASILAFDHVQSLLAIGTQDGR-------------------IKVIGGDNIEGLLVSP---KQ-------LAFKHLEFLQNQ 95 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~DG~-------------------I~vw~~~~~~~~~~~~---~~-------~~V~~l~Fs~dg 95 (1155)
...++|+|++.++.+++.++. |..+|..+++.+..+. +. .+.....+..+|
T Consensus 232 w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 232 WDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 346899999999999988774 8889998887776542 11 233333444466
Q ss_pred c---EEEEEecCCeEEEEECCCCceeeeecCC
Q 001109 96 G---FLVSISSGNEIQLWDLEARRITSTLPWE 124 (1155)
Q Consensus 96 ~---~LvS~s~Dg~I~vWDl~t~~~~~~l~~~ 124 (1155)
. .|+.++.+|.+.++|.++|+++...+..
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~ 343 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFG 343 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEecccccc
Confidence 4 5888899999999999999998766543
No 275
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.60 E-value=0.084 Score=64.56 Aligned_cols=64 Identities=20% Similarity=0.162 Sum_probs=44.9
Q ss_pred CCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCC
Q 001109 679 ECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTG 758 (1155)
Q Consensus 679 ~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG 758 (1155)
.+|.|.-||+.+++++.+... ..++.+-... ..+.+++.++.|+.++.+|..||
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~----~~~~~~g~~~----------------------tagg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKME----RFAVWGGTMA----------------------TAGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEE----SSCCCSBCEE----------------------ETTTEEEEECTTSEEEEEETTTC
T ss_pred CcCeEEEEECCCCCEEeEecC----CCCccCcceE----------------------ecCCEEEEECCCCeEEEEECCCC
Confidence 357888889988888876532 1111110011 24678888999999999999999
Q ss_pred ceeeeeeccc
Q 001109 759 HILFSRSIHH 768 (1155)
Q Consensus 759 ~~l~~~~~~~ 768 (1155)
+.+....+..
T Consensus 505 ~~lW~~~l~~ 514 (599)
T 1w6s_A 505 DLLWKFKIPS 514 (599)
T ss_dssp CEEEEEECSS
T ss_pred CEEEEeeCCC
Confidence 9999886544
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.57 E-value=0.014 Score=73.71 Aligned_cols=152 Identities=11% Similarity=0.077 Sum_probs=90.0
Q ss_pred ccC-CcCcEEEEEE-CCC----cEEEEeCCCC-CeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC----
Q 001109 546 EDY-LVERLYIAGY-RDG----STRIWDATYP-TLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG---- 614 (1155)
Q Consensus 546 ~~s-~~~~lLaTgs-~Dg----tVrlWD~~~~-~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG---- 614 (1155)
.++ |+|++||-+. .+| +|+++|+.++ .. +...+. .....++|+|||+.|+....+.
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-----l~~~~~--------~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-----IADKVS--------GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-----CCCCEE--------EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-----CCcccc--------CceeeEEEecCCCEEEEEEECCCCCC
Confidence 789 9999777443 233 5999999887 52 111110 0134678999999888777652
Q ss_pred -eEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEee-cCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEecC
Q 001109 615 -LVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFS-VLNSPICNLKFSNFGARLAVGFE---CSQVAMLDIS 689 (1155)
Q Consensus 615 -~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~-~h~~~VtslafSpdg~~LAsGs~---Dg~V~lWDi~ 689 (1155)
.|.++++.+.... ...++. ....-...+.|||||++|+..+. ...|.++|+.
T Consensus 247 ~~v~~~~lgt~~~~-----------------------~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 247 NKVWRHVMGKLQSE-----------------------DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp EEEEEEETTSCGGG-----------------------CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred CEEEEEECCCCchh-----------------------cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 4566665543210 001222 12234567899999999887663 3468888988
Q ss_pred Ccc--E-EEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCC----ceEEEEECCC
Q 001109 690 TFS--V-LFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKD----AHIVVCDSTT 757 (1155)
Q Consensus 690 ~~~--~-l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~D----g~I~vwd~~t 757 (1155)
++. . +.. +..+...+..++.|. .++.+++....| ..|.++|+.+
T Consensus 304 ~~~~~~~~~~--l~~~~~~~~~s~~~~----------------------~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 304 KGNAHNTLEI--VRPREKGVRYDVQMH----------------------GTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SCTTCCCEEE--SSCCCTTCCEEEEEE----------------------TTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCCceeEE--eecCCCCceEEEeee----------------------eCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 752 2 011 223445566666654 334455554444 3788888875
No 277
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.52 E-value=3.8 Score=53.83 Aligned_cols=114 Identities=10% Similarity=0.051 Sum_probs=74.3
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEccCCce--EEEEcCCCCCEEEEEEEcC------CcEEEEEec-CCeEEEEECCC
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIGGDNIE--GLLVSPKQLAFKHLEFLQN------QGFLVSISS-GNEIQLWDLEA 114 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~--~~~~~~~~~~V~~l~Fs~d------g~~LvS~s~-Dg~I~vWDl~t 114 (1155)
.|.+.+.+. .++++++ ++.|.++..+..+ ......-...|.++++.+. +.+++.+.. |++|+|.++.+
T Consensus 515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 466666553 4566665 6788887654332 2222222457999999763 357888886 99999999987
Q ss_pred CceeeeecC--CCceeEEEEe--cCCCEEEEEeCCCcEEEEEecCCCcee
Q 001109 115 RRITSTLPW--ESNITAFSVI--FGTSYMYIGDEYGMVYVLKYDTEEGKL 160 (1155)
Q Consensus 115 ~~~~~~l~~--~~~Vtsva~s--pd~~~l~~G~~dG~V~vw~~d~~~~~l 160 (1155)
-+.+..... .....++.+. .+..+|.+|..||.+..+.+|..++.+
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l 641 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLL 641 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCE
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcc
Confidence 666654333 3345555443 244689999999987666777655544
No 278
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=96.40 E-value=2e-05 Score=58.22 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhh
Q 001109 1082 KSRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGE 1117 (1155)
Q Consensus 1082 ~~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~ 1117 (1155)
..+++.+++++ |+||++||.+||+|+||||+
T Consensus 7 ~~d~l~~vq~q-----vdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 7 SNRRLQQTQAQ-----VDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCCSSCEESCC-----CCCSCCCCTTTHHHHSCCBC
T ss_pred chhHHHHHHHH-----HHHHHHHHHHhHHHHHHcCC
Confidence 34555556655 88999999999999999996
No 279
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.36 E-value=4.6 Score=53.06 Aligned_cols=204 Identities=9% Similarity=0.127 Sum_probs=122.8
Q ss_pred CeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC---
Q 001109 594 SVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF--- 670 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd--- 670 (1155)
.|.+.+... .++++++ ++.+.++.+..+.. ..+ .. ......|+|+++.|.
T Consensus 515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L--------------~~~---------~~-~~l~~evscl~i~~~~~~ 567 (1158)
T 3ei3_A 515 NISVASCNS--SQVVVAV-GRALYYLQIHPQEL--------------RQI---------SH-TEMEHEVACLDITPLGDS 567 (1158)
T ss_dssp CCCEEEECS--SEEEEEE-TTEEEEEEEETTEE--------------EEE---------EE-EECSSCEEEEECCCCSSS
T ss_pred EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCce--------------eee---------cc-cCCCCceEEEEeecCCCC
Confidence 566666543 4666665 67888888775211 000 11 123567999999864
Q ss_pred ---CCEEEEEeC-CCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeC
Q 001109 671 ---GARLAVGFE-CSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTK 746 (1155)
Q Consensus 671 ---g~~LAsGs~-Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~ 746 (1155)
++++|+|.+ |++|+|+++.+...+....+ . -.....++.+-.. ....+|+.|..
T Consensus 568 ~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L-~-~~~~p~si~l~~~--------------------~~~~~L~igl~ 625 (1158)
T 3ei3_A 568 NGLSPLCAIGLWTDISARILKLPSFELLHKEML-G-GEIIPRSILMTTF--------------------ESSHYLLCALG 625 (1158)
T ss_dssp TTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC-C-SSCCEEEEEEEEE--------------------TTEEEEEEEET
T ss_pred cccccEEEEEECCCCEEEEEECCCCCeEEEEEC-C-CCCCCcEEEEEEe--------------------CCCcEEEEEeC
Confidence 479999997 99999999998776654432 2 1234566665421 12457999999
Q ss_pred CceEE--EEECCCCceeeeeecccCCCceEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCcCCCCCCCCCcccccc
Q 001109 747 DAHIV--VCDSTTGHILFSRSIHHQESNAIYMCIIEGGNFFSETSSEKQSLNTPQNSKATSEPDQTNANTGSDPVVAELE 824 (1155)
Q Consensus 747 Dg~I~--vwd~~tG~~l~~~~~~~~~~~al~~~~ld~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1155)
||.+. .+|..+|.+...-.. ...++++.|..+...
T Consensus 626 dG~l~~~~~d~~tg~l~d~r~~-~LG~~pv~L~~~~~~------------------------------------------ 662 (1158)
T 3ei3_A 626 DGALFYFGLNIETGLLSDRKKV-TLGTQPTVLRTFRSL------------------------------------------ 662 (1158)
T ss_dssp TSEEEEEEECTTTCCEEEEEEE-ECCSSCCEEEEEESS------------------------------------------
T ss_pred CCeEEEEEEcCCCCccccceeE-EcCCCceEEEEEeeC------------------------------------------
Confidence 99975 456667776544211 012222333322111
Q ss_pred cccccchhhhhccceEEEEEeccceeeeccccccccccceeEEeecc-CCccceeeeeeCCceeEEEEEeecCcEEEeec
Q 001109 825 TSTEATYLERIFEHLFVLLCYEDALWLYPLKSLIQGHTDSIHKVNLL-KPCCWTTSFKKNEKECGLVVLYQTGDIEIRVL 903 (1155)
Q Consensus 825 ~~~~~~~~~~~~~~~~~llc~e~~~~~ysl~~~~qg~~~~~~k~k~~-~~~~~~~~~~~~~~~~~l~~~~~~G~ieirsl 903 (1155)
....++.||+.-.-+|+-.. .++-..+. ++.-++..|....-+-|++++. .+.+.|..+
T Consensus 663 ------------~~~~V~a~s~rp~liy~~~~-------~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i 722 (1158)
T 3ei3_A 663 ------------STTNVFACSDRPTVIYSSNH-------KLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTI 722 (1158)
T ss_dssp ------------SCEEEEEESSSCEEEEESSS-------SEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEE
T ss_pred ------------CceeEEEECCCCEEEEEcCC-------ceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEe
Confidence 03467788888877776432 23333444 4455666787754455777664 555999999
Q ss_pred CCcccc
Q 001109 904 PYLEVG 909 (1155)
Q Consensus 904 p~l~~~ 909 (1155)
++++.+
T Consensus 723 ~~~~~~ 728 (1158)
T 3ei3_A 723 DEIQKL 728 (1158)
T ss_dssp CCSSSE
T ss_pred cccCCe
Confidence 988654
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.30 E-value=0.8 Score=50.87 Aligned_cols=112 Identities=13% Similarity=-0.042 Sum_probs=70.4
Q ss_pred CCceEEEEcCCCC-EEEEEEcCCeEEEEccCC----ce-EEEEcCCCCCEEEEEEEcCCcEEEEE-ecCCeEEEEECCCC
Q 001109 43 STASILAFDHVQS-LLAIGTQDGRIKVIGGDN----IE-GLLVSPKQLAFKHLEFLQNQGFLVSI-SSGNEIQLWDLEAR 115 (1155)
Q Consensus 43 ~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~----~~-~~~~~~~~~~V~~l~Fs~dg~~LvS~-s~Dg~I~vWDl~t~ 115 (1155)
..+..++|++.++ +..+-..+++|..++..+ .. .......-.....+++.+.++.|+.+ ...+.|.+.|++..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4578899999765 455555668999998765 21 11111122345789999766666655 45789999999765
Q ss_pred ceeeeec-CCCceeEEEEecCCCEEEEEeCC--CcEEEEEec
Q 001109 116 RITSTLP-WESNITAFSVIFGTSYMYIGDEY--GMVYVLKYD 154 (1155)
Q Consensus 116 ~~~~~l~-~~~~Vtsva~spd~~~l~~G~~d--G~V~vw~~d 154 (1155)
.....+. .-.....++++|.+.+||..+.. +.|+..+.|
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence 4332222 22567899999988888877653 455444333
No 281
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.27 E-value=0.11 Score=63.34 Aligned_cols=77 Identities=9% Similarity=0.120 Sum_probs=54.6
Q ss_pred eEEEEcCCCCEEEEEEc--------------------C----CeEEEEccCCceEEEEcC---CC--------CCEEEEE
Q 001109 46 SILAFDHVQSLLAIGTQ--------------------D----GRIKVIGGDNIEGLLVSP---KQ--------LAFKHLE 90 (1155)
Q Consensus 46 s~lafsp~g~lLAsgs~--------------------D----G~I~vw~~~~~~~~~~~~---~~--------~~V~~l~ 90 (1155)
..++++|+..++.+++. | +.|..+|..+++.+..+. +. .++. +.
T Consensus 249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~ 327 (582)
T 1flg_A 249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD 327 (582)
T ss_dssp SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence 45899999888888874 2 589999998887776542 21 1221 12
Q ss_pred EE-cCC---cEEEEEecCCeEEEEECCCCceeeeecC
Q 001109 91 FL-QNQ---GFLVSISSGNEIQLWDLEARRITSTLPW 123 (1155)
Q Consensus 91 Fs-~dg---~~LvS~s~Dg~I~vWDl~t~~~~~~l~~ 123 (1155)
.. .+| ..|+.++.+|.+.++|.++|+++..++.
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 22 456 3678889999999999999998866543
No 282
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.21 E-value=0.57 Score=52.27 Aligned_cols=112 Identities=9% Similarity=0.089 Sum_probs=76.3
Q ss_pred CceEEEEcCCCCEEEEEE-cCCeEEEEccCCceE-EEEcCC-------CCCEEEEEE---EcCCcEEEEEec--------
Q 001109 44 TASILAFDHVQSLLAIGT-QDGRIKVIGGDNIEG-LLVSPK-------QLAFKHLEF---LQNQGFLVSISS-------- 103 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs-~DG~I~vw~~~~~~~-~~~~~~-------~~~V~~l~F---s~dg~~LvS~s~-------- 103 (1155)
-..+++|++...+|-+++ ..|+|..|+..+... ....+. ...+..|.| .|+++.++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 355689998666666666 689999999874322 223322 114579999 588655554432
Q ss_pred -----CCeEEEEECC---CCceeeeecCC--------------CceeEEEEecCCCEEEEEeCC-CcEEEEEecCCC
Q 001109 104 -----GNEIQLWDLE---ARRITSTLPWE--------------SNITAFSVIFGTSYMYIGDEY-GMVYVLKYDTEE 157 (1155)
Q Consensus 104 -----Dg~I~vWDl~---t~~~~~~l~~~--------------~~Vtsva~spd~~~l~~G~~d-G~V~vw~~d~~~ 157 (1155)
++.|..+|+. +++.+...... .....+++.++|+.-++++.. +.| |.++.+.
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I--~rV~pdG 168 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI--ARVSADG 168 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE--EEECTTS
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeE--EEEeCCC
Confidence 6789999999 78766544321 247899999999988888877 754 7777754
No 283
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.11 E-value=0.92 Score=49.92 Aligned_cols=111 Identities=16% Similarity=0.136 Sum_probs=62.6
Q ss_pred CCCceEEEEcCCCCEEEEEEcC-C-eEEEEccCCceE--EEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCce
Q 001109 42 PSTASILAFDHVQSLLAIGTQD-G-RIKVIGGDNIEG--LLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRI 117 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~D-G-~I~vw~~~~~~~--~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~ 117 (1155)
.+.+..++++|+|+++++.... + .|..++..+.+. +...........+++.+++..+++-..++.|.++|..+++.
T Consensus 71 ~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 71 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence 3567889999999976655443 2 466666544433 22222222334555555543344433578898999876531
Q ss_pred -eee--------ecCC--CceeEEEEecCCCEEEEEeC-CCcEEEEEec
Q 001109 118 -TST--------LPWE--SNITAFSVIFGTSYMYIGDE-YGMVYVLKYD 154 (1155)
Q Consensus 118 -~~~--------l~~~--~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d 154 (1155)
+.. .... ...+.+ +|++.+||+... .+.|++++++
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD 197 (306)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence 110 0011 233444 889998888765 4556555544
No 284
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.10 E-value=0.77 Score=52.06 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=62.7
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEc----CCCCCEEEEEEEcC---CcEEEEEec----C----CeE
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVS----PKQLAFKHLEFLQN---QGFLVSISS----G----NEI 107 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~----~~~~~V~~l~Fs~d---g~~LvS~s~----D----g~I 107 (1155)
.....|+|+|+|+++ ++..+|+|++++.++.+.+... ........|+|+|+ +++|+.+.. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~-V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYL-VTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEE-EEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEE-EEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 457899999999855 4567799999976554222222 12346789999997 556655443 3 678
Q ss_pred EEEECCCC--c------eeeeecCC--CceeEEEEecCCCEEEEE
Q 001109 108 QLWDLEAR--R------ITSTLPWE--SNITAFSVIFGTSYMYIG 142 (1155)
Q Consensus 108 ~vWDl~t~--~------~~~~l~~~--~~Vtsva~spd~~~l~~G 142 (1155)
..|++..+ . ++..++.. .....++|.|||. ||++
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt 151 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYIT 151 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEE
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEE
Confidence 88887654 1 11223311 2346799999997 4444
No 285
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.06 E-value=0.44 Score=54.01 Aligned_cols=108 Identities=12% Similarity=0.158 Sum_probs=66.7
Q ss_pred CCcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc-eEEEEcC----CCCCEEEEEEEcC---CcEEEEEe
Q 001109 31 FDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI-EGLLVSP----KQLAFKHLEFLQN---QGFLVSIS 102 (1155)
Q Consensus 31 ~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~-~~~~~~~----~~~~V~~l~Fs~d---g~~LvS~s 102 (1155)
+...... .|. .....++|+|+|++++ +..+|+|++++ ++. +.+...+ .......|+|+|+ +++|+.+.
T Consensus 21 ~~~~~va-~~l-~~P~~ia~~pdG~l~V-~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 21 LRVEEVV-GGL-EVPWALAFLPDGGMLI-AERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp CCEEEEE-CCC-SCEEEEEECTTSCEEE-EETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred cEEEEEE-CCC-CCceEEEEcCCCeEEE-EeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence 4444333 343 3577999999998654 56779999998 332 2222221 2346789999998 56666554
Q ss_pred c-C-----CeEEEEECCCCc------eeeeecC--C--CceeEEEEecCCCEEEEEe
Q 001109 103 S-G-----NEIQLWDLEARR------ITSTLPW--E--SNITAFSVIFGTSYMYIGD 143 (1155)
Q Consensus 103 ~-D-----g~I~vWDl~t~~------~~~~l~~--~--~~Vtsva~spd~~~l~~G~ 143 (1155)
. . +.|..|++..+. ++..++. . .....++|.|||. ||++.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 152 (352)
T 2ism_A 97 TVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT 152 (352)
T ss_dssp EECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred ecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence 3 2 678888887542 2222431 1 2346899999995 55553
No 286
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.02 E-value=0.83 Score=52.41 Aligned_cols=113 Identities=14% Similarity=-0.029 Sum_probs=72.6
Q ss_pred CCceEEEEcCCCC-EEEEEEcCCeEEEEccCCceEEEE-cCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCCceee
Q 001109 43 STASILAFDHVQS-LLAIGTQDGRIKVIGGDNIEGLLV-SPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEARRITS 119 (1155)
Q Consensus 43 ~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~~~~~~-~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~~~~~ 119 (1155)
..+..++|++.++ ++.+-...++|..++.++...... .........|++.+.++.|+.+. ..+.|.+.+++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 3477899997655 555555678999998876543222 22223456789998767666554 46789999987554332
Q ss_pred eecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecC
Q 001109 120 TLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDT 155 (1155)
Q Consensus 120 ~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~ 155 (1155)
.+... .....++++|.+.+||.......-+|+.++.
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 23222 5678999999988888876543123444444
No 287
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.84 E-value=1.3 Score=49.98 Aligned_cols=109 Identities=16% Similarity=-0.030 Sum_probs=70.7
Q ss_pred CceEEEEcCCCCE-EEEEEcCCeEEEEccCCceEEE-EcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCCceeee
Q 001109 44 TASILAFDHVQSL-LAIGTQDGRIKVIGGDNIEGLL-VSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEARRITST 120 (1155)
Q Consensus 44 ~vs~lafsp~g~l-LAsgs~DG~I~vw~~~~~~~~~-~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~~~~~~ 120 (1155)
.+..++|++..+. ..+-...++|..++.++..... ..........+++.+.++.|+-+. ..+.|.+.+++.......
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l 153 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 153 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence 4678999976554 4455567899999877643222 122223456899998767666554 567899999876543322
Q ss_pred ecC-CCceeEEEEecCCCEEEEEeCC--CcEEEEE
Q 001109 121 LPW-ESNITAFSVIFGTSYMYIGDEY--GMVYVLK 152 (1155)
Q Consensus 121 l~~-~~~Vtsva~spd~~~l~~G~~d--G~V~vw~ 152 (1155)
+.. -.....++++|.+.+||..+.. +.|+..+
T Consensus 154 ~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 154 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 222 2567899999988888877654 4454433
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.83 E-value=2 Score=49.48 Aligned_cols=112 Identities=12% Similarity=-0.053 Sum_probs=72.1
Q ss_pred CCceEEEEcCCCCEEE-EEEcCCeEEEEccCCc-----eEEEEcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCC
Q 001109 43 STASILAFDHVQSLLA-IGTQDGRIKVIGGDNI-----EGLLVSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEAR 115 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLA-sgs~DG~I~vw~~~~~-----~~~~~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~ 115 (1155)
..+..|+|++.++.|. +-...++|+.++..+. ........-.....|++.+.++.|+-+. ..+.|.+.|++.+
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 4678899998665444 4455688988887652 1222222334678999998666666655 5678999999866
Q ss_pred ceeeeec-CCCceeEEEEecCCCEEEEEeC--CCcEEEEEec
Q 001109 116 RITSTLP-WESNITAFSVIFGTSYMYIGDE--YGMVYVLKYD 154 (1155)
Q Consensus 116 ~~~~~l~-~~~~Vtsva~spd~~~l~~G~~--dG~V~vw~~d 154 (1155)
.....+. .-.....++++|.+.+||.... .+.|+..+.|
T Consensus 192 ~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 192 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 5433333 2256789999998888887764 2555544433
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.79 E-value=0.55 Score=54.91 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=66.9
Q ss_pred CCceEEEEcCCCCEEEEEEcC---C-eEEEEccCCc----eEEEEcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECC
Q 001109 43 STASILAFDHVQSLLAIGTQD---G-RIKVIGGDNI----EGLLVSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLE 113 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~D---G-~I~vw~~~~~----~~~~~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~ 113 (1155)
..+..|+|+++|+++++-..+ . .+..++..+. ..+... .....+++.|+.+.|+.++ .++.|..+|..
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~---~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNA---RGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEEC---SSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccccc---CCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 457889999999955554321 1 1333332221 111111 2345678999445565554 56789999998
Q ss_pred CCceeeee-c--CCCceeEEEEecCCCEEEEEeCC-CcEEEEEecCCC
Q 001109 114 ARRITSTL-P--WESNITAFSVIFGTSYMYIGDEY-GMVYVLKYDTEE 157 (1155)
Q Consensus 114 t~~~~~~l-~--~~~~Vtsva~spd~~~l~~G~~d-G~V~vw~~d~~~ 157 (1155)
++.....+ . ....-..++|+|++++||+.... +.|+.++++...
T Consensus 259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~ 306 (433)
T 4hw6_A 259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRET 306 (433)
T ss_dssp TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTT
T ss_pred CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCC
Confidence 77663222 1 12233469999999988888754 556666565443
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.77 E-value=0.82 Score=51.00 Aligned_cols=109 Identities=15% Similarity=0.044 Sum_probs=70.5
Q ss_pred CceEEEEcCCC-CEEEEEEcCCeEEEEccCCc---eEEEEcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCCcee
Q 001109 44 TASILAFDHVQ-SLLAIGTQDGRIKVIGGDNI---EGLLVSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEARRIT 118 (1155)
Q Consensus 44 ~vs~lafsp~g-~lLAsgs~DG~I~vw~~~~~---~~~~~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~~~~ 118 (1155)
.+.+|+|++.+ .+..+-...++|..++..+. +.+... .-.....+++.+.++.|+-+. ..+.|.+.+++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 46689999864 55555566789999987654 222222 223456899998666666554 5678999998754332
Q ss_pred eee-cCCCceeEEEEecCCCEEEEEeC--CCcEEEEEe
Q 001109 119 STL-PWESNITAFSVIFGTSYMYIGDE--YGMVYVLKY 153 (1155)
Q Consensus 119 ~~l-~~~~~Vtsva~spd~~~l~~G~~--dG~V~vw~~ 153 (1155)
..+ ..-.....++++|.+.+||.... .+.|+..+.
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 152 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM 152 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc
Confidence 222 22356789999998888888764 355544433
No 291
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=95.76 E-value=0.0034 Score=69.87 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHH
Q 001109 1082 KSRTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKL 1119 (1155)
Q Consensus 1082 ~~~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl 1119 (1155)
..+.+.+++++ ++||++||.+||+|++||||||
T Consensus 278 p~d~l~~lq~~-----i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 278 HMDRVRNLQSE-----VEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp ------CHHHH-----HHHHHHHHHHHHHHHHHHC---
T ss_pred cchHHHHHHHH-----HHHHHHHHHHhHHHHHhccCCC
Confidence 35677778888 8999999999999999999997
No 292
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.70 E-value=1.7 Score=48.90 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=73.7
Q ss_pred CCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCCceeee
Q 001109 42 PSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEARRITST 120 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~~~~~~ 120 (1155)
+...+|.+..+++. |..+. ...|+.++.++...............++|.+.++.|+-++ ..+.|..++++.+.....
T Consensus 33 ~d~~~C~~~~~~~~-ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 33 PDRRSCKALGPEPV-LLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp TTSSCEEESSSCCE-EEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCCcccccccCce-eEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 34567888888554 44443 3568888887765544444445688999998777777665 568899999987654333
Q ss_pred ecC-CCceeEEEEecCCCEEEEEeC-CCcEEEEEecC
Q 001109 121 LPW-ESNITAFSVIFGTSYMYIGDE-YGMVYVLKYDT 155 (1155)
Q Consensus 121 l~~-~~~Vtsva~spd~~~l~~G~~-dG~V~vw~~d~ 155 (1155)
+.. -.....+++++.+..||.... .+.|.+.+.+.
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 322 245678999987777776654 45566554443
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.69 E-value=0.26 Score=57.57 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=46.8
Q ss_pred EEEEEEEc-CCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEecCCCEEEEEeC
Q 001109 86 FKHLEFLQ-NQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGTSYMYIGDE 144 (1155)
Q Consensus 86 V~~l~Fs~-dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~~~l~~G~~ 144 (1155)
...|+|+| +++.|+.++..+.|+.+|++++.+............++|++++++|++...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~ 198 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITND 198 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEEC
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeC
Confidence 46889998 567888887778999999988766544444467889999999998888765
No 294
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.59 E-value=0.42 Score=58.36 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=53.9
Q ss_pred EEEEcCCCCEEEEEEcCC----------------eEEEEccCCceEEEEcCC--C---------CCEEEEEEE-cCC---
Q 001109 47 ILAFDHVQSLLAIGTQDG----------------RIKVIGGDNIEGLLVSPK--Q---------LAFKHLEFL-QNQ--- 95 (1155)
Q Consensus 47 ~lafsp~g~lLAsgs~DG----------------~I~vw~~~~~~~~~~~~~--~---------~~V~~l~Fs-~dg--- 95 (1155)
.+++++...++.+++.++ .|..+|..+++....+.. . .++. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 578999999988888764 788899888877654421 1 1222 2222 466
Q ss_pred cEEEEEecCCeEEEEECCCCceeeeec
Q 001109 96 GFLVSISSGNEIQLWDLEARRITSTLP 122 (1155)
Q Consensus 96 ~~LvS~s~Dg~I~vWDl~t~~~~~~l~ 122 (1155)
..++.++.+|.+.+.|.++|+++...+
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCcEEEEEECCCCCEeeccc
Confidence 457778899999999999999887654
No 295
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.55 E-value=0.18 Score=59.06 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=68.0
Q ss_pred CceEEEEcC-CCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC----CeEEEEECCCCcee
Q 001109 44 TASILAFDH-VQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG----NEIQLWDLEARRIT 118 (1155)
Q Consensus 44 ~vs~lafsp-~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D----g~I~vWDl~t~~~~ 118 (1155)
....|+++| ++..|.++...++|++++..+...............|+|+++|++|+.++.. +...+|-...+...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 567899998 3444555544489999998876554443444568899999999877776642 22334433344322
Q ss_pred --eeecCCCceeEEEEecCCCEEEEEe-CCCcEEEEEecCCC
Q 001109 119 --STLPWESNITAFSVIFGTSYMYIGD-EYGMVYVLKYDTEE 157 (1155)
Q Consensus 119 --~~l~~~~~Vtsva~spd~~~l~~G~-~dG~V~vw~~d~~~ 157 (1155)
..+........++++|++..|++++ .++.| +.++...
T Consensus 218 ~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V--~~~~~~~ 257 (430)
T 3tc9_A 218 VITELTKGQNCNGAETHPINGELYFNSWNAGQV--FRYDFTT 257 (430)
T ss_dssp SEEEEEECSSCCCEEECTTTCCEEEEETTTTEE--EEEETTT
T ss_pred eeeeeccCCCceEEEEeCCCCEEEEEECCCCEE--EEEECCC
Confidence 2232234457788999444455554 45655 5555543
No 296
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.48 E-value=1 Score=50.89 Aligned_cols=101 Identities=12% Similarity=0.030 Sum_probs=60.1
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCCceE--EEEc-----CCCCCEEEEEEEcC---CcEEEEEe-c-------C
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDNIEG--LLVS-----PKQLAFKHLEFLQN---QGFLVSIS-S-------G 104 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~--~~~~-----~~~~~V~~l~Fs~d---g~~LvS~s-~-------D 104 (1155)
.....|+|+|+|+.|.++...|+|++++.++... +... ........++|+|+ +++|..+. . .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 3578899999999344566789999998654321 1111 12345689999995 45555443 2 2
Q ss_pred CeEEEEECCCC--ce------eeeecC----CCceeEEEEecCCCEEEEEeC
Q 001109 105 NEIQLWDLEAR--RI------TSTLPW----ESNITAFSVIFGTSYMYIGDE 144 (1155)
Q Consensus 105 g~I~vWDl~t~--~~------~~~l~~----~~~Vtsva~spd~~~l~~G~~ 144 (1155)
+.|..|++... ++ +..++. ......++|.||| +||++..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G 148 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALG 148 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEEC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEEC
Confidence 35777776533 11 112221 1224679999999 5665543
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.26 E-value=7.9 Score=47.24 Aligned_cols=102 Identities=17% Similarity=0.078 Sum_probs=67.3
Q ss_pred CCceEEEEcCCCCEEEEEE-cCCeEEEEccCCce--EEEEcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCCcee
Q 001109 43 STASILAFDHVQSLLAIGT-QDGRIKVIGGDNIE--GLLVSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEARRIT 118 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs-~DG~I~vw~~~~~~--~~~~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~~~~ 118 (1155)
..+..|+|++.++.|..+. ..++|..++.++.. .......-.....|++.+.++.|+.+. ..+.|.+-|++.....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 4577899999776555544 46889888876642 122222234688999999777777665 4688999999765432
Q ss_pred eee-cCCCceeEEEEecCCCEEEEEeC
Q 001109 119 STL-PWESNITAFSVIFGTSYMYIGDE 144 (1155)
Q Consensus 119 ~~l-~~~~~Vtsva~spd~~~l~~G~~ 144 (1155)
..+ ..-.....++++|.+.+||..+.
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~ 146 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDW 146 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEEC
T ss_pred EEEeCCCCCCceEEEecCCCeEEEecc
Confidence 222 12255788999999888888764
No 298
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.18 E-value=2 Score=49.08 Aligned_cols=106 Identities=13% Similarity=0.070 Sum_probs=68.2
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCCceeeeec
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEARRITSTLP 122 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~~~~~~l~ 122 (1155)
.-+|.+.++.+ +|..+. ...|+.++..+...............++|.+.++.|+-++ ..+.|..|+++.+.....+.
T Consensus 78 ~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CCeECCccccc-eeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 45677777744 444443 3578888887655444334445688999998777777665 56889999998765433332
Q ss_pred C-CCceeEEEEecCCCEEEEEeC-CCcEEEE
Q 001109 123 W-ESNITAFSVIFGTSYMYIGDE-YGMVYVL 151 (1155)
Q Consensus 123 ~-~~~Vtsva~spd~~~l~~G~~-dG~V~vw 151 (1155)
. -.....+++++.+..||.... .+.|.+.
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~ 186 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVA 186 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEEC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEE
Confidence 2 245577899988777777654 3445443
No 299
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.12 E-value=0.39 Score=55.22 Aligned_cols=169 Identities=17% Similarity=0.203 Sum_probs=91.0
Q ss_pred cCCcEEEEEecCCeEEEEECCCCceeeeecCC-----CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceec
Q 001109 93 QNQGFLVSISSGNEIQLWDLEARRITSTLPWE-----SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYV 167 (1155)
Q Consensus 93 ~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~-----~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i 167 (1155)
.+|..|+.+ .++.||.-++..+..-+.+..+ ..|..+..+|+|++||+-+.. +|.|..+.-.. ..
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~--------~~ 99 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGY--------SN 99 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTC--------SC
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCcc--------cc
Confidence 344445544 3577777777744333333322 368889999999999998765 56776544211 00
Q ss_pred cCCceeeeceeEeeEecccccccccccccccceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEE
Q 001109 168 PKDVIEVFNHLLLEFCPNHIQREKGKAAFNASLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLL 247 (1155)
Q Consensus 168 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~lls 247 (1155)
... +.. .. ......|.+.+.. .....+|.. +.|||-+.. ...|++
T Consensus 100 ~~~--------------~~~---~~----~~q~~ty~l~~~~----~~~~s~I~q-----VlWHPl~~~-----ds~LVV 144 (452)
T 3pbp_A 100 VED--------------VSI---QD----AFQIFHYSIDEEE----VGPKSSIKK-----VLFHPKSYR-----DSCIVV 144 (452)
T ss_dssp CCC--------------HHH---HH----TTEEEEEEGGGCC------CCCCEEE-----EEECTTBGG-----GCEEEE
T ss_pred Ccc--------------ccc---cc----ccceeEEEcCCcc----cCCCCceeE-----EEeccccCC-----CCeEEE
Confidence 000 000 00 0011223332111 001344555 999997541 158999
Q ss_pred EEcCCeEEEEEccCCe--EEEEecccccccccccccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEE--c
Q 001109 248 VYANGLIILWDVSEDK--VVLVRGSKDLQLKTEIVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGY--V 323 (1155)
Q Consensus 248 g~~dG~I~lWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~--~ 323 (1155)
-.+|+.|++||+.... +. . ++... ... | .......|.++||. .+|-.|.... .
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~-~-------L~k~~--~~f---g---------~d~~~~ev~S~~Fg-~~~lTLYvl~~t~ 201 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPI-V-------LNKPN--NSF---G---------LDARVNDITDLEFS-KDGLTLYCLNTTE 201 (452)
T ss_dssp EETTSCEEEEETTCTTSCCE-E-------ESCCC--SEE---E---------SCSSCCCEEEEEEC-TTSSCEEEEECTT
T ss_pred EecCCEEEEEEcccCCCCCc-c-------hhccc--ccc---C---------CCcccceEEEEEEc-CCCcEEEEEecCC
Confidence 9999999999998632 11 1 11000 000 0 00124679999998 6776666654 5
Q ss_pred CCcEEE
Q 001109 324 DGDILL 329 (1155)
Q Consensus 324 DG~I~l 329 (1155)
.|+|+-
T Consensus 202 ~GDIYA 207 (452)
T 3pbp_A 202 GGDIFA 207 (452)
T ss_dssp SCEEEE
T ss_pred CCCEEE
Confidence 666654
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.06 E-value=0.72 Score=51.45 Aligned_cols=157 Identities=10% Similarity=0.066 Sum_probs=98.5
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCcccc-CCCCCCeEEEEE---ecCCCeEEEEeC-------------
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRT-ATESESVSALEF---CSVTLNLAIGSS------------- 612 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~-~gh~~~V~~laf---spdg~~Lasgs~------------- 612 (1155)
.++++++.-..|+|..||...+....+ .+. ++.. ......+..|.| .|+++++++...
T Consensus 24 ~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~----~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g 98 (334)
T 2p9w_A 24 RQVFYQSNLYKGRIEVYNPKTQSHFNV-VID----GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG 98 (334)
T ss_dssp TTEEEEEETTTTEEEEECTTTCCEEEE-CCT----TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred CCEEEEEeccCCEEEEEcCCCCeEEEE-ecC----CccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence 455666666899999999976653222 121 1110 011124589999 799888886542
Q ss_pred CCeEEEEEec---cCccccceeeeccCCceEEEecCCCCCceeEEeec-----------CCCCeEEEEEcCCCCEEEEEe
Q 001109 613 SGLVWLYNLI---KSSNEETLNLVTETGKEVHILPGGDGPQCKALFSV-----------LNSPICNLKFSNFGARLAVGF 678 (1155)
Q Consensus 613 dG~V~lwd~~---~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~-----------h~~~VtslafSpdg~~LAsGs 678 (1155)
+..|..||+. +++.. +...|.. -......|+..++|+.-++++
T Consensus 99 ~~~v~~~Dl~~~~tg~~~-----------------------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s 155 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPV-----------------------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA 155 (334)
T ss_dssp CCEEEEEESSCCTTCCCS-----------------------EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEcCCcCCCCCEE-----------------------EEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence 5778889988 43221 1111111 113478899999999988888
Q ss_pred CC-CcEEEEecCCccEEEEeccC--CCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEEC
Q 001109 679 EC-SQVAMLDISTFSVLFITDSL--SNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDS 755 (1155)
Q Consensus 679 ~D-g~V~lWDi~~~~~l~~~~~~--~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~ 755 (1155)
.. +.|..+|.....+.-..... .........++|. |||++|++...++.|..+|+
T Consensus 156 ~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~----------------------pdg~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 156 LGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFD----------------------PHSNKLIAFGGPRALTAFDV 213 (334)
T ss_dssp ESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEE----------------------TTTTEEEEESSSSSEEEEEC
T ss_pred CCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEe----------------------CCCCEEEEEcCCCeEEEEcC
Confidence 88 88888877654332111000 1112235677887 89998988877999999997
Q ss_pred C
Q 001109 756 T 756 (1155)
Q Consensus 756 ~ 756 (1155)
.
T Consensus 214 ~ 214 (334)
T 2p9w_A 214 S 214 (334)
T ss_dssp S
T ss_pred C
Confidence 7
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.81 E-value=2 Score=47.80 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=62.8
Q ss_pred CCCCceEEEEcCCCCEEEEEEcCCeEEE-Ec-cCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEEC--CCCc
Q 001109 41 IPSTASILAFDHVQSLLAIGTQDGRIKV-IG-GDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDL--EARR 116 (1155)
Q Consensus 41 ~~~~vs~lafsp~g~lLAsgs~DG~I~v-w~-~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl--~t~~ 116 (1155)
+++.+..+++.++++++|++. +|.|.. .| ..+.+.+. .+....+..+.|.+++.+++.+...+..+-+|- .+-+
T Consensus 120 ~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~tW~~~~-~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 120 LPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGKNWQALV-QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE 197 (327)
T ss_dssp CSSCEEEEEEEETTEEEEEET-TCCEEEESSTTSSEEEEE-CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE
T ss_pred CCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCCCCEEee-cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee
Confidence 445677888888888887764 565543 33 22333332 234557889999998766655544444444542 2222
Q ss_pred eeeeecCCCceeEEEEecCCCEEEEEeCCCcEEE
Q 001109 117 ITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYV 150 (1155)
Q Consensus 117 ~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~v 150 (1155)
.+. ......+..+++.+++.+++ ++.+|.+++
T Consensus 198 ~~~-~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~ 229 (327)
T 2xbg_A 198 PHN-RTTSRRLHNMGFTPDGRLWM-IVNGGKIAF 229 (327)
T ss_dssp EEE-CCSSSCEEEEEECTTSCEEE-EETTTEEEE
T ss_pred ECC-CCCCCccceeEECCCCCEEE-EeCCceEEE
Confidence 221 22346788899999887654 456776644
No 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.67 E-value=4 Score=51.31 Aligned_cols=112 Identities=12% Similarity=-0.045 Sum_probs=71.3
Q ss_pred CCceEEEEcCCCC-EEEEEEcCCeEEEEccCCc----e-EEEEcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCC
Q 001109 43 STASILAFDHVQS-LLAIGTQDGRIKVIGGDNI----E-GLLVSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEAR 115 (1155)
Q Consensus 43 ~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~----~-~~~~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~ 115 (1155)
..+..|+|++... ++.+-...++|+.++..+. . .......-.....|++.+.++.|+.+. ..+.|.+.+++..
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 4577899999554 5555556688988877652 1 122221234566899998877777665 4688999999765
Q ss_pred ceeeeec-CCCceeEEEEecCCCEEEEEeCC--CcEEEEEec
Q 001109 116 RITSTLP-WESNITAFSVIFGTSYMYIGDEY--GMVYVLKYD 154 (1155)
Q Consensus 116 ~~~~~l~-~~~~Vtsva~spd~~~l~~G~~d--G~V~vw~~d 154 (1155)
.....+. .-.....|+++|.+.+||..... +.|.+..+|
T Consensus 504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d 545 (791)
T 3m0c_C 504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545 (791)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence 4332222 22568899999998888887643 445444333
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.61 E-value=1.5 Score=49.40 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=65.8
Q ss_pred CCeEEEEcc--CCceEEEEc----C--CC-CCEEEEEE--EcCCc--EEEEEecCCeEEEEEC-------CCCceeeeec
Q 001109 63 DGRIKVIGG--DNIEGLLVS----P--KQ-LAFKHLEF--LQNQG--FLVSISSGNEIQLWDL-------EARRITSTLP 122 (1155)
Q Consensus 63 DG~I~vw~~--~~~~~~~~~----~--~~-~~V~~l~F--s~dg~--~LvS~s~Dg~I~vWDl-------~t~~~~~~l~ 122 (1155)
+++|.||.. ...+..... + .. ..+..+++ ++..+ +++....++.+..|++ .+.++++++.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 578999955 333322111 1 11 34556777 66444 6778888999999998 3446778888
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCcEEEEEecCC
Q 001109 123 WESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 123 ~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
..+.+..|++++....||++-++-- ||.|+.+
T Consensus 178 lgsq~EgcvvDd~~g~Lyv~eEd~G--Iw~~da~ 209 (355)
T 3amr_A 178 MNSQTEGMAADDEYGRLYIAEEDEA--IWKFSAE 209 (355)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTTE--EEEEECS
T ss_pred CCCCcceEEEcCCCCeEEEecccce--EEEEeCC
Confidence 8889999999999999999999853 6998864
No 304
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.42 E-value=1.7 Score=48.39 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=68.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEEcCCeEEE-Ecc--CCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc
Q 001109 40 GIPSTASILAFDHVQSLLAIGTQDGRIKV-IGG--DNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR 116 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs~DG~I~v-w~~--~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~ 116 (1155)
+++..+..++|+|++.++|++.. |.|.. +|. ...+.+ .......+..+.+.+++. ++.++.+|.+.+++.+.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGR-LWMIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETT-SSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSC-EEEEETTTEEEEEETTEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECC-CcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCC-EEEEeCCceEEEecCCCCC
Confidence 55667889999999999988754 44444 443 333333 233456788999999864 5566678888887544343
Q ss_pred eeeeec-----CCCceeEEEEecCCCEEEEEeCCCcE
Q 001109 117 ITSTLP-----WESNITAFSVIFGTSYMYIGDEYGMV 148 (1155)
Q Consensus 117 ~~~~l~-----~~~~Vtsva~spd~~~l~~G~~dG~V 148 (1155)
.-..+. ....+.++++.+++.++++|. +|.|
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence 322222 123588899988877766654 6766
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.38 E-value=13 Score=45.44 Aligned_cols=101 Identities=14% Similarity=-0.009 Sum_probs=68.7
Q ss_pred CCceEEEEcCCCCEE-EEEEcCCeEEEEccCCc--eEEEEcCCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCCcee
Q 001109 43 STASILAFDHVQSLL-AIGTQDGRIKVIGGDNI--EGLLVSPKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEARRIT 118 (1155)
Q Consensus 43 ~~vs~lafsp~g~lL-Asgs~DG~I~vw~~~~~--~~~~~~~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~~~~ 118 (1155)
..+..|+|++.+..| .+-..+++|+.++.++. +.+... .-.....|++.+.++.|+-+. ..+.|.+-+++.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence 457899999976554 45556789999887654 323222 223567899998777777665 4678999999765322
Q ss_pred eee-cCCCceeEEEEecCCCEEEEEeC
Q 001109 119 STL-PWESNITAFSVIFGTSYMYIGDE 144 (1155)
Q Consensus 119 ~~l-~~~~~Vtsva~spd~~~l~~G~~ 144 (1155)
..+ ..-.....++++|...+||..+.
T Consensus 116 ~l~~~~l~~P~~iavdp~~G~lY~tD~ 142 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPAEGFMYWTEW 142 (628)
T ss_dssp EEECSSCCCEEEEEEETTTTEEEEEEC
T ss_pred EEEeCCCCCcccEEEccCCCeEEEeCC
Confidence 222 22256789999998888888764
No 306
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.09 E-value=4.2 Score=45.94 Aligned_cols=103 Identities=8% Similarity=0.154 Sum_probs=62.5
Q ss_pred CCCCCceEEEEcCCCCEEEEE------------EcCCeEEEEccCC--c--eEEEEcC-----CCCCEEEEEEEc--CC-
Q 001109 40 GIPSTASILAFDHVQSLLAIG------------TQDGRIKVIGGDN--I--EGLLVSP-----KQLAFKHLEFLQ--NQ- 95 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsg------------s~DG~I~vw~~~~--~--~~~~~~~-----~~~~V~~l~Fs~--dg- 95 (1155)
|.....-.++++|+|..+.+. ..+|.|.+||..+ . +.+.... ..-....+.+.+ ++
T Consensus 47 ~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~ 126 (355)
T 3sre_A 47 GIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT 126 (355)
T ss_dssp TCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred CCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCc
Confidence 433345667889988655443 2689999999752 1 2221111 123566778766 34
Q ss_pred cEEEEEec---CCeEEEEECCCCc----eeeeecCC--CceeEEEEecCCCEEEEE
Q 001109 96 GFLVSISS---GNEIQLWDLEARR----ITSTLPWE--SNITAFSVIFGTSYMYIG 142 (1155)
Q Consensus 96 ~~LvS~s~---Dg~I~vWDl~t~~----~~~~l~~~--~~Vtsva~spd~~~l~~G 142 (1155)
.+|+.+.. +.+|.+|+++.+. .+.++.+. ...+.+++.++|.+.++.
T Consensus 127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~ 182 (355)
T 3sre_A 127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATN 182 (355)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEE
T ss_pred EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecC
Confidence 36666642 5689998887542 23344443 568899999999876654
No 307
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.03 E-value=0.32 Score=55.87 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=75.6
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEEccC-C------------ce-EEEEcC-----CCCCEEEEEEEcCC---cEEEEE
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVIGGD-N------------IE-GLLVSP-----KQLAFKHLEFLQNQ---GFLVSI 101 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw~~~-~------------~~-~~~~~~-----~~~~V~~l~Fs~dg---~~LvS~ 101 (1155)
.+..+..+|+|++||+-+.. +|.|-..+ + .+ ..+... ...+|+.+.|.|-+ .-|++.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 68889999999999998654 67775443 1 01 122222 25689999999954 579999
Q ss_pred ecCCeEEEEECCCCc--eeeeec-------C---CCceeEEEEecCCCEEEEEe--CCCcEEE
Q 001109 102 SSGNEIQLWDLEARR--ITSTLP-------W---ESNITAFSVIFGTSYMYIGD--EYGMVYV 150 (1155)
Q Consensus 102 s~Dg~I~vWDl~t~~--~~~~l~-------~---~~~Vtsva~spd~~~l~~G~--~dG~V~v 150 (1155)
..|++|++||+.... .. .+. . ...|.+++|.+++-.||+.+ +.|.|+-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 999999999998521 22 221 1 15689999999988888866 8898754
No 308
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=93.99 E-value=2.4 Score=45.61 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=55.0
Q ss_pred CCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCCceeeeecCC--CceeEEEEecCCCEEEEEeCCCcEEEEEecCC
Q 001109 83 QLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEARRITSTLPWE--SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 83 ~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~~~~~~l~~~--~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
...+..|+|.|+++.|++++ .++.|...|+. ++.+.+++.. .....+++.+++.++++--.++.+.++.++..
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 35699999999888787754 57789999997 8888887543 57888999988887666555666766665553
No 309
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=93.97 E-value=9.1 Score=42.14 Aligned_cols=153 Identities=10% Similarity=-0.015 Sum_probs=93.2
Q ss_pred cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC--CeEEEEEeccCccc
Q 001109 550 VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS--GLVWLYNLIKSSNE 627 (1155)
Q Consensus 550 ~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d--G~V~lwd~~~~~~~ 627 (1155)
.++++++-..++.|.+.|........+. .. .-.....++++|.+..|..+... +.|..++++.....
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~--~~---------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~ 156 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLF--RE---------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 156 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEE--EC---------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEE--EC---------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE
Confidence 4667888788899999998765432221 11 11256899999977766555543 57777766542110
Q ss_pred cceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEecCCccE--EEEeccCCCCC
Q 001109 628 ETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF-ECSQVAMLDISTFSV--LFITDSLSNSN 704 (1155)
Q Consensus 628 ~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs-~Dg~V~lWDi~~~~~--l~~~~~~~~h~ 704 (1155)
......-..-..|+++|+++.|..+. ..+.|..+|+.+... +... .+.-
T Consensus 157 -------------------------~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~---~~~~ 208 (316)
T 1ijq_A 157 -------------------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRL 208 (316)
T ss_dssp -------------------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTT
T ss_pred -------------------------EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec---CCcc
Confidence 00111123467899999877766555 456899999875322 2111 0111
Q ss_pred CCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCceEEEEECCCCceeeee
Q 001109 705 SPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDAHIVVCDSTTGHILFSR 764 (1155)
Q Consensus 705 ~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~ 764 (1155)
..-..|++. ++.+.++-...+.|..+|..+|+.+...
T Consensus 209 ~~P~giav~-----------------------~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 209 AHPFSLAVF-----------------------EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp SSEEEEEEE-----------------------TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCcEEEEEE-----------------------CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 223456664 2566777778889999999888866554
No 310
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=93.94 E-value=3.6 Score=47.32 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=75.9
Q ss_pred CCceEEEEcCCC-CEEEEEEcCCeEEEEccCCceEEEEc-CCCCCEEEEEEEcCCcEEEEEec--CCeEEEEECCCCcee
Q 001109 43 STASILAFDHVQ-SLLAIGTQDGRIKVIGGDNIEGLLVS-PKQLAFKHLEFLQNQGFLVSISS--GNEIQLWDLEARRIT 118 (1155)
Q Consensus 43 ~~vs~lafsp~g-~lLAsgs~DG~I~vw~~~~~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s~--Dg~I~vWDl~t~~~~ 118 (1155)
..+..||+++.+ ++..+-...++|.+.+.++....... ..-.....|++.|.+++|+-+.. .+.|...+++.....
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 456789999854 45555556789999988765433222 23345789999998788877663 368999998754332
Q ss_pred eeecCC-CceeEEEEecCCCEEEEEeCC-CcEEEEEecC
Q 001109 119 STLPWE-SNITAFSVIFGTSYMYIGDEY-GMVYVLKYDT 155 (1155)
Q Consensus 119 ~~l~~~-~~Vtsva~spd~~~l~~G~~d-G~V~vw~~d~ 155 (1155)
..+... ...+.+++++++..||.++.. +.|+..++|.
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 222222 567899999999999988754 4455554443
No 311
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.88 E-value=1 Score=53.26 Aligned_cols=61 Identities=26% Similarity=0.338 Sum_probs=45.5
Q ss_pred EEEEEEEc-CCcEEEEEec-CCeEEEEECCCCceeeeecCC----CceeEEEE-------ecCCCEEEEEeCCC
Q 001109 86 FKHLEFLQ-NQGFLVSISS-GNEIQLWDLEARRITSTLPWE----SNITAFSV-------IFGTSYMYIGDEYG 146 (1155)
Q Consensus 86 V~~l~Fs~-dg~~LvS~s~-Dg~I~vWDl~t~~~~~~l~~~----~~Vtsva~-------spd~~~l~~G~~dG 146 (1155)
...|+|.| +++.|+.+.. .+.|++.|++++.+...+... .....++| ++++++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 46899998 4666776654 467999999888765444332 35899999 99999888887765
No 312
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=93.77 E-value=2.2 Score=47.88 Aligned_cols=65 Identities=8% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCcEEEEEecCCeEEEEECCCCceeeeecCCCceeEEEEecCC----C---EEEEEeC---CCcEEEEEecCCCcee
Q 001109 94 NQGFLVSISSGNEIQLWDLEARRITSTLPWESNITAFSVIFGT----S---YMYIGDE---YGMVYVLKYDTEEGKL 160 (1155)
Q Consensus 94 dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~~~~Vtsva~spd~----~---~l~~G~~---dG~V~vw~~d~~~~~l 160 (1155)
...+++....++-+.|+|+ +|+.+..+.. ++++.+.+-|+- + ++++... +.+|+++.+|...+++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 3455666677789999999 8888888865 678888877742 2 3344443 4679999888765543
No 313
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=93.64 E-value=1.7 Score=50.71 Aligned_cols=151 Identities=10% Similarity=0.018 Sum_probs=86.1
Q ss_pred ccCCc---CcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC---eEEEE
Q 001109 546 EDYLV---ERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG---LVWLY 619 (1155)
Q Consensus 546 ~~s~~---~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG---~V~lw 619 (1155)
++.|+ ++++++-.. +.|+.+|...+.+..+. +.-.....|+|+++|+ |.++...+ ...++
T Consensus 145 avd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~------------~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~ 210 (433)
T 4hw6_A 145 MFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT------------TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIY 210 (433)
T ss_dssp EECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC------------CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEE
T ss_pred EEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee------------cCCCCccEEEECCCCC-EEEEcCCCCcccceEE
Confidence 56663 777776554 89999998777643221 1112578999999999 54444322 11122
Q ss_pred EeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEecCCccEEEEec
Q 001109 620 NLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSN-FGARLAVGFECSQVAMLDISTFSVLFITD 698 (1155)
Q Consensus 620 d~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSp-dg~~LAsGs~Dg~V~lWDi~~~~~l~~~~ 698 (1155)
.+..... +.....+.. -.....+++.| +|.+.++-..++.|..+|..++.+.....
T Consensus 211 ~~~~~~~----------------------~~~~~~~~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~ 267 (433)
T 4hw6_A 211 LFTRASG----------------------FTERLSLCN-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV 267 (433)
T ss_dssp EECGGGT----------------------TCCEEEEEE-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE
T ss_pred EEECCCC----------------------eeccccccc-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe
Confidence 2221100 000011111 12335688999 67666666677889999998776522221
Q ss_pred cCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEE-EEEeCCceEEEEECC
Q 001109 699 SLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETL-FFMTKDAHIVVCDST 756 (1155)
Q Consensus 699 ~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L-~s~s~Dg~I~vwd~~ 756 (1155)
. .+....-..|+|+ |+++.| ++-+..+.|..+|..
T Consensus 268 ~-~~~~~~~~~ia~d----------------------pdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 268 M-MDTKGSNFHIVWH----------------------PTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp E-CSCCSSCEEEEEC----------------------TTSSEEEEEETTTTEEEEEEBC
T ss_pred c-cCCCCCcccEEEe----------------------CCCCEEEEEeCCCCEEEEEeCC
Confidence 1 1112222368887 888844 455567889997754
No 314
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=93.60 E-value=4.4 Score=44.92 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=73.9
Q ss_pred CceEEEEcCCCC-EEEEEEcCCeEEEEccCCceE-EEEcCCCCCEEEEEEEcCCcEEEEEec--CCeEEEEECCCCceee
Q 001109 44 TASILAFDHVQS-LLAIGTQDGRIKVIGGDNIEG-LLVSPKQLAFKHLEFLQNQGFLVSISS--GNEIQLWDLEARRITS 119 (1155)
Q Consensus 44 ~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~~~-~~~~~~~~~V~~l~Fs~dg~~LvS~s~--Dg~I~vWDl~t~~~~~ 119 (1155)
.+..+|+++.+. +..+-...++|.+++.++... .+....-.....+++.|.+++|+-+.. .+.|...+++......
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 466799998554 555555678999998876432 222233446789999998788777763 5788888886433221
Q ss_pred eecC-CCceeEEEEecCCCEEEEEeCC-CcEEEEEecC
Q 001109 120 TLPW-ESNITAFSVIFGTSYMYIGDEY-GMVYVLKYDT 155 (1155)
Q Consensus 120 ~l~~-~~~Vtsva~spd~~~l~~G~~d-G~V~vw~~d~ 155 (1155)
.... -...+.++++|++..||.++.. +.|+.+++|.
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 1111 2456899999999999888754 5565555543
No 315
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=93.49 E-value=1.3 Score=54.70 Aligned_cols=116 Identities=11% Similarity=-0.041 Sum_probs=74.7
Q ss_pred ccCC-cCcEEEEEECCC-----------cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeC-
Q 001109 546 EDYL-VERLYIAGYRDG-----------STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSS- 612 (1155)
Q Consensus 546 ~~s~-~~~lLaTgs~Dg-----------tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~- 612 (1155)
++.+ ++++|+.|+.+. .+.+||..+.....+..+.. .+.....++++.++++++++|+.
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~--------~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT--------KHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC--------SCCCSSCEEEECTTSCEEEECSSS
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC--------CCCCccccccCCCCCCEEEeCCCC
Confidence 4455 889999998654 58899998876433322211 12223456788899999999985
Q ss_pred CCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCC-CeEEEEEcCCCCEEEEEe-CC-----CcEEE
Q 001109 613 SGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNS-PICNLKFSNFGARLAVGF-EC-----SQVAM 685 (1155)
Q Consensus 613 dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~-~VtslafSpdg~~LAsGs-~D-----g~V~l 685 (1155)
+..+.+||..+.... ..-..+.. .-.++++.++|+.++.|+ .+ ..+.+
T Consensus 264 ~~~v~~yd~~t~~W~-------------------------~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~ 318 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWI-------------------------PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV 318 (656)
T ss_dssp TTCEEEEEGGGTEEE-------------------------ECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred CCceEEecCcCCcee-------------------------ECCCCCccccccceEEecCCeEEEEeCcccCCcccccceE
Confidence 468999998764311 00000111 112455668999999998 44 46899
Q ss_pred EecCCccEE
Q 001109 686 LDISTFSVL 694 (1155)
Q Consensus 686 WDi~~~~~l 694 (1155)
||..+.+..
T Consensus 319 yd~~t~~W~ 327 (656)
T 1k3i_A 319 YSPSSKTWT 327 (656)
T ss_dssp EETTTTEEE
T ss_pred eCCCCCcce
Confidence 999876643
No 316
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.04 E-value=21 Score=43.47 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=72.7
Q ss_pred CCceEEEEcCCCCE-EEEEEcCCeEEEEccCCceE-EEEcCCCCCEEEEEEEcCCcEEEEEec--CCeEEEEECCCCcee
Q 001109 43 STASILAFDHVQSL-LAIGTQDGRIKVIGGDNIEG-LLVSPKQLAFKHLEFLQNQGFLVSISS--GNEIQLWDLEARRIT 118 (1155)
Q Consensus 43 ~~vs~lafsp~g~l-LAsgs~DG~I~vw~~~~~~~-~~~~~~~~~V~~l~Fs~dg~~LvS~s~--Dg~I~vWDl~t~~~~ 118 (1155)
..+..||+++.++. ..+-...++|.+.+.++... ++....-.....|++.|.+++|+-++. .+.|..-+++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 35778999996654 44445678999998877532 222223334678999998788877764 357777777643322
Q ss_pred eeec-CCCceeEEEEecCCCEEEEEeCCCcEEEEEecCC
Q 001109 119 STLP-WESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 119 ~~l~-~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
.... .-...+.+++++++..||.+..... +|+.++.+
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~-~I~~~~~d 201 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLN-FIHKSNLD 201 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTC-CEEEESSS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCC-eEEEecCC
Confidence 2221 1245789999999888888865432 34545543
No 317
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=92.95 E-value=0.2 Score=62.49 Aligned_cols=109 Identities=12% Similarity=-0.097 Sum_probs=65.8
Q ss_pred CCceEEEEcCCCCEEEEE-EcCCeEEEEccCC----ceEEEEc-CCCCCEEEEEEEcCCcEEEEEe-cCCeEEEEECCCC
Q 001109 43 STASILAFDHVQSLLAIG-TQDGRIKVIGGDN----IEGLLVS-PKQLAFKHLEFLQNQGFLVSIS-SGNEIQLWDLEAR 115 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsg-s~DG~I~vw~~~~----~~~~~~~-~~~~~V~~l~Fs~dg~~LvS~s-~Dg~I~vWDl~t~ 115 (1155)
..+..|+|++.+..|... ...++|+.++..+ ....... ..-.....|++.+.++.|+.+. ..+.|.+.|++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 356789999976655554 4557899988764 1111111 1112345688886555565543 5688999998765
Q ss_pred ceeeeecC-CCceeEEEEecCCCEEEEEeCC--CcEEEE
Q 001109 116 RITSTLPW-ESNITAFSVIFGTSYMYIGDEY--GMVYVL 151 (1155)
Q Consensus 116 ~~~~~l~~-~~~Vtsva~spd~~~l~~G~~d--G~V~vw 151 (1155)
.....+.. -.....++++|.+.+||..... +.|+++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~ 524 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 524 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence 44333322 2456788999988877776532 455443
No 318
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=91.72 E-value=7.2 Score=49.04 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=76.2
Q ss_pred CCceEEEEcCCCC-EEEEEEcCCeEEEEccCCceEEEE-cCCCCCEEEEEEEcCCcEEEEEecC--CeEEEEECCCCcee
Q 001109 43 STASILAFDHVQS-LLAIGTQDGRIKVIGGDNIEGLLV-SPKQLAFKHLEFLQNQGFLVSISSG--NEIQLWDLEARRIT 118 (1155)
Q Consensus 43 ~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~~~~~~-~~~~~~V~~l~Fs~dg~~LvS~s~D--g~I~vWDl~t~~~~ 118 (1155)
..+..||+++.++ +..+-...++|.+.+.++...... ...-.....|++.|.+++|+-+... +.|.+.+++.....
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 4567899999885 455555678999998876543222 2233457899999987888877643 67999998754433
Q ss_pred eeecCC-CceeEEEEecCCCEEEEEeCC-CcEEEEEec
Q 001109 119 STLPWE-SNITAFSVIFGTSYMYIGDEY-GMVYVLKYD 154 (1155)
Q Consensus 119 ~~l~~~-~~Vtsva~spd~~~l~~G~~d-G~V~vw~~d 154 (1155)
..+... ...+.|++++.+..||++... ..|++.+++
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 222222 568899999999999988754 345444443
No 319
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=91.62 E-value=1.2 Score=54.84 Aligned_cols=115 Identities=10% Similarity=-0.042 Sum_probs=73.1
Q ss_pred EEEEec-CCCeEEEEeCCC-----------eEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEe-ecCCCCeE
Q 001109 597 ALEFCS-VTLNLAIGSSSG-----------LVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALF-SVLNSPIC 663 (1155)
Q Consensus 597 ~lafsp-dg~~Lasgs~dG-----------~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l-~~h~~~Vt 663 (1155)
++++.| ++++++.|+.+. .+.+||+.++... ....+ ..+.....
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~-----------------------~~~~~~~~~~~~~~ 246 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS-----------------------DRTVTVTKHDMFCP 246 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC-----------------------CCEEEECSCCCSSC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE-----------------------eCcccCCCCCCccc
Confidence 567788 899999988653 5777877765321 00111 12333445
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEecCCccEEEEeccCCCCCCCe-eEEEEeecCCCCccccCCCCCCCCCCCCCCCcEE
Q 001109 664 NLKFSNFGARLAVGFE-CSQVAMLDISTFSVLFITDSLSNSNSPV-LYLAVKSLSDTSNLTISPKDSDINSSNDTKKETL 741 (1155)
Q Consensus 664 slafSpdg~~LAsGs~-Dg~V~lWDi~~~~~l~~~~~~~~h~~~V-~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L 741 (1155)
++++.++|+.+++|+. ++.+.+||..+.+....... +...- .++++. +|++++
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~---~~~R~~~s~~~~----------------------~dg~iy 301 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM---QVARGYQSSATM----------------------SDGRVF 301 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCC---SSCCSSCEEEEC----------------------TTSCEE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCC---CccccccceEEe----------------------cCCeEE
Confidence 6788999999999984 55899999987755422111 11111 122332 588999
Q ss_pred EEEe-CC-----ceEEEEECCCCc
Q 001109 742 FFMT-KD-----AHIVVCDSTTGH 759 (1155)
Q Consensus 742 ~s~s-~D-----g~I~vwd~~tG~ 759 (1155)
+.|+ .+ ..+.+||..+++
T Consensus 302 v~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 302 TIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEeCcccCCcccccceEeCCCCCc
Confidence 9998 44 568999988765
No 320
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=91.56 E-value=4 Score=48.26 Aligned_cols=161 Identities=13% Similarity=0.081 Sum_probs=92.2
Q ss_pred ccCC--cCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEE-------ecCCCeEEEEeCCC--
Q 001109 546 EDYL--VERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEF-------CSVTLNLAIGSSSG-- 614 (1155)
Q Consensus 546 ~~s~--~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~laf-------spdg~~Lasgs~dG-- 614 (1155)
++.| .++++++-...+.|++.|...+.+..+..... +.-.....|+| +++|.+|.++...+
T Consensus 145 a~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~--------~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 145 AFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT--------IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp EEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT--------SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred EEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc--------cccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 6776 36677777666789999998877543322110 11125889999 99999777776654
Q ss_pred ---eEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEecC-
Q 001109 615 ---LVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF-GARLAVGFECSQVAMLDIS- 689 (1155)
Q Consensus 615 ---~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd-g~~LAsGs~Dg~V~lWDi~- 689 (1155)
...++-+.... .+.+ ... .++ +.+..+ . ....++++|+ +.++++-..++.|..+|+.
T Consensus 217 ~~~~~~V~~i~r~~-~G~~--~~~----------~~~-~~v~~~---~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~ 278 (496)
T 3kya_A 217 GDESPSVYIIKRNA-DGTF--DDR----------SDI-QLIAAY---K-QCNGATIHPINGELYFNSYEKGQVFRLDLVD 278 (496)
T ss_dssp GGGEEEEEEEECCT-TSCC--STT----------SCE-EEEEEE---S-CCCCEEECTTTCCEEEEETTTTEEEEECHHH
T ss_pred cccCceEEEEecCC-CCce--eec----------ccc-eeeccC---C-CceEEEEcCCCCeEEEEECCCCEEEEEeccc
Confidence 33344442211 0000 000 000 011111 1 2346789994 5566677788889999998
Q ss_pred ------CccE-----------EEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcE-EEEEeCCceEE
Q 001109 690 ------TFSV-----------LFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKET-LFFMTKDAHIV 751 (1155)
Q Consensus 690 ------~~~~-----------l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~-L~s~s~Dg~I~ 751 (1155)
++.+ +..... .+....-..|+|+ |+|+. .++-+....|+
T Consensus 279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~-~~~~~~p~~ia~~----------------------p~G~~lYvaD~~~h~I~ 335 (496)
T 3kya_A 279 YFKTIKNGGSWDPIVKNNPNTFKQLFT-IADPSWEFQIFIH----------------------PTGKYAYFGVINNHYFM 335 (496)
T ss_dssp HHHHHHTTCCCCCBGGGCTTTEEEEEE-CSSSSCCEEEEEC----------------------TTSSEEEEEETTTTEEE
T ss_pred ccccccCceeecccccccccccceeEe-cCCCCCceEEEEc----------------------CCCCEEEEEeCCCCEEE
Confidence 5543 111111 1222334688998 88985 45556778888
Q ss_pred EEEC
Q 001109 752 VCDS 755 (1155)
Q Consensus 752 vwd~ 755 (1155)
.+|.
T Consensus 336 kid~ 339 (496)
T 3kya_A 336 RSDY 339 (496)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8654
No 321
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=90.92 E-value=35 Score=41.53 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=75.0
Q ss_pred CceEEEEcCCCCEE-EEEEcCCeEEEEccCCceE-EEEcCCCCCEEEEEEEcCCcEEEEEec--CCeEEEEECCCCceee
Q 001109 44 TASILAFDHVQSLL-AIGTQDGRIKVIGGDNIEG-LLVSPKQLAFKHLEFLQNQGFLVSISS--GNEIQLWDLEARRITS 119 (1155)
Q Consensus 44 ~vs~lafsp~g~lL-Asgs~DG~I~vw~~~~~~~-~~~~~~~~~V~~l~Fs~dg~~LvS~s~--Dg~I~vWDl~t~~~~~ 119 (1155)
.+..||+++.++.| .+-...++|.+.+.++... ++....-.....|++.|..++|+-+.. .+.|...+++......
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence 56789999876544 5545568999998766432 222223345689999997778877763 4678888887554332
Q ss_pred eecCCCceeEEEEecCCCEEEEEeCC-CcEEEEEecC
Q 001109 120 TLPWESNITAFSVIFGTSYMYIGDEY-GMVYVLKYDT 155 (1155)
Q Consensus 120 ~l~~~~~Vtsva~spd~~~l~~G~~d-G~V~vw~~d~ 155 (1155)
....-...+.+++++++..||.+... +.|...+++.
T Consensus 161 l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 161 LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 23333567899999999999988764 4455444443
No 322
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=90.75 E-value=0.65 Score=57.86 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=69.3
Q ss_pred ceEEEEcCCC-CEEEEEEcCCeEEEEccCCceEEEEcC-CCCCEEEEEEEcCCcEEEEEecC--CeEEEEECCCCceeee
Q 001109 45 ASILAFDHVQ-SLLAIGTQDGRIKVIGGDNIEGLLVSP-KQLAFKHLEFLQNQGFLVSISSG--NEIQLWDLEARRITST 120 (1155)
Q Consensus 45 vs~lafsp~g-~lLAsgs~DG~I~vw~~~~~~~~~~~~-~~~~V~~l~Fs~dg~~LvS~s~D--g~I~vWDl~t~~~~~~ 120 (1155)
+..||+++.+ +++.+-...++|.+++.++........ .......|++.|.+++|+.+... +.|.+.+++.... ..
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~ 533 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS 533 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE
Confidence 5568999655 455554566899999987754433322 22345788999987777766532 6788888764322 22
Q ss_pred ec-C-CCceeEEEEecCCCEEEEEeCC-CcEEEEEec
Q 001109 121 LP-W-ESNITAFSVIFGTSYMYIGDEY-GMVYVLKYD 154 (1155)
Q Consensus 121 l~-~-~~~Vtsva~spd~~~l~~G~~d-G~V~vw~~d 154 (1155)
+. . -...+.++|+|++..||++... +.|++++++
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 21 1 1446789999998888887654 456555444
No 323
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=90.44 E-value=7.5 Score=43.86 Aligned_cols=105 Identities=7% Similarity=0.029 Sum_probs=60.9
Q ss_pred cEEEEEEC--CCcEEEEeCCCC--CeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeC---C-----------
Q 001109 552 RLYIAGYR--DGSTRIWDATYP--TLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSS---S----------- 613 (1155)
Q Consensus 552 ~lLaTgs~--DgtVrlWD~~~~--~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~---d----------- 613 (1155)
++++.-+. +.+|.+|++... .+..+..+... .-...+.+++.++|++.++... |
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~--------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK--------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT--------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccC--------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhcc
Confidence 36666555 678888877543 33333333321 1136789999999987776541 1
Q ss_pred -CeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 001109 614 -GLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGF-ECSQVAMLDIST 690 (1155)
Q Consensus 614 -G~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs-~Dg~V~lWDi~~ 690 (1155)
..-+||.+..+. +.....+ -.--+.|+|||||++|.++. ..+.|..||+..
T Consensus 200 ~~~g~vyr~d~~~-------------------------~~~~~~~-l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 200 LAWSFVTYYSPND-------------------------VRVVAEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CCCEEEEEECTTC-------------------------CEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCccEEEEEECCe-------------------------EEEeecC-CcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 122333333211 1111121 12357899999998776655 567899999864
No 324
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=89.01 E-value=0.62 Score=48.82 Aligned_cols=100 Identities=12% Similarity=-0.059 Sum_probs=62.8
Q ss_pred CCceEEEEcCCCCEEEEEEcCCeEEEEccCC-------ceEEEE-cCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC
Q 001109 43 STASILAFDHVQSLLAIGTQDGRIKVIGGDN-------IEGLLV-SPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA 114 (1155)
Q Consensus 43 ~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~-------~~~~~~-~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t 114 (1155)
..++.+||+|+|.+.|+ .+|.+.-.+..+ ...... ...-....++.|.++|. |.++ .||.|.-|+--+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE-ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe-CCCEEEEeCCCc
Confidence 37889999999999998 678766655433 111111 00111247899999964 5555 579998887532
Q ss_pred Ccee-----eeecC---CCceeEEEEecCCCEEEEEeCCCcE
Q 001109 115 RRIT-----STLPW---ESNITAFSVIFGTSYMYIGDEYGMV 148 (1155)
Q Consensus 115 ~~~~-----~~l~~---~~~Vtsva~spd~~~l~~G~~dG~V 148 (1155)
.... .+.-+ -..++++.|.|+|.+-++. +|.+
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 2111 11111 1568999999999877776 7764
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=85.19 E-value=19 Score=38.70 Aligned_cols=149 Identities=17% Similarity=0.073 Sum_probs=76.2
Q ss_pred cCcEEEEEECCC-----cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC-------CeEE
Q 001109 550 VERLYIAGYRDG-----STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS-------GLVW 617 (1155)
Q Consensus 550 ~~~lLaTgs~Dg-----tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d-------G~V~ 617 (1155)
++.+++.|+.++ .+.+||..+..-..+..+.. ......++. -++++++.|+.+ ..+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~---------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT---------RRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS---------CCBSCEEEE--ETTEEEEECCEETTTTEECCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC---------cccCceEEE--ECCEEEEEeCCCCCCCccccEEE
Confidence 567888887664 46778877665332221111 111112222 367777887653 2467
Q ss_pred EEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEecCCcc
Q 001109 618 LYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECS-----QVAMLDISTFS 692 (1155)
Q Consensus 618 lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg-----~V~lWDi~~~~ 692 (1155)
+||+.+.... .+. . +........++.+ +++.++.|+.++ .|.++|+.+.+
T Consensus 177 ~yd~~~~~W~--------------~~~--~-------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 177 CYNATTNEWT--------------YIA--E-------MSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EEETTTTEEE--------------EEC--C-------CSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EEeCCCCcEE--------------ECC--C-------CccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 7777654211 000 0 0000111122222 678888887654 58889988765
Q ss_pred EEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCCc-----eEEEEECCCCc
Q 001109 693 VLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKDA-----HIVVCDSTTGH 759 (1155)
Q Consensus 693 ~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~Dg-----~I~vwd~~tG~ 759 (1155)
.......... ... .+++. .++++++.|+.++ .+.++|+++.+
T Consensus 232 W~~~~~~~~~-r~~-~~~~~-----------------------~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 232 WRQVADMNMC-RRN-AGVCA-----------------------VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEECCCSSC-CBS-CEEEE-----------------------ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EeeCCCCCCc-ccc-CeEEE-----------------------ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 4322111000 000 01111 3577888887664 48899988765
No 326
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=85.19 E-value=2.9 Score=46.85 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=27.4
Q ss_pred CCcEEEEEeCCceEEEEECCCCceeeeeecc
Q 001109 737 KKETLFFMTKDAHIVVCDSTTGHILFSRSIH 767 (1155)
Q Consensus 737 d~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~~ 767 (1155)
++..+++|+.+|++...|+.||++++.....
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 4668999999999999999999999998553
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=84.29 E-value=6.1 Score=44.44 Aligned_cols=101 Identities=13% Similarity=0.048 Sum_probs=61.5
Q ss_pred cCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceE--EEEcC-----CCCCEEEEEEEcC---CcEEEEE-e--cCC
Q 001109 39 YGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEG--LLVSP-----KQLAFKHLEFLQN---QGFLVSI-S--SGN 105 (1155)
Q Consensus 39 ~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~--~~~~~-----~~~~V~~l~Fs~d---g~~LvS~-s--~Dg 105 (1155)
.|. .....|+|.|+|+++++--..|+|++++..+... +...+ .......|+|+|+ .++|... + .++
T Consensus 29 ~gL-~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 29 TGL-NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp CCC-SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred cCC-CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 444 4678999999999776654489999997654332 22221 2456789999985 3455432 2 456
Q ss_pred eEEEEECCCCc----------e-eeeecC--CCceeEEEEecCCCEEE
Q 001109 106 EIQLWDLEARR----------I-TSTLPW--ESNITAFSVIFGTSYMY 140 (1155)
Q Consensus 106 ~I~vWDl~t~~----------~-~~~l~~--~~~Vtsva~spd~~~l~ 140 (1155)
.|.-|.+..+. . +..++. ...-..++|.|||.+.+
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyv 155 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYA 155 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEE
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEE
Confidence 77777766521 1 122321 12345688999885433
No 328
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=83.23 E-value=30 Score=37.13 Aligned_cols=150 Identities=16% Similarity=0.090 Sum_probs=78.1
Q ss_pred cCcEEEEEECCC-----cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC-----eEEEE
Q 001109 550 VERLYIAGYRDG-----STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG-----LVWLY 619 (1155)
Q Consensus 550 ~~~lLaTgs~Dg-----tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG-----~V~lw 619 (1155)
++.+++.|+.++ .+.++|..+..-..+..+... ..+| .++. -++++++.|+.++ .|.+|
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-----REGA----GLVV--ASGVIYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-----CBSC----EEEE--ETTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-----cccc----eEEE--ECCEEEEECCCCCCcccceEEEE
Confidence 566788777543 577888877654333222111 0111 2222 3778888887653 46777
Q ss_pred EeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEecCCccEE
Q 001109 620 NLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFEC-----SQVAMLDISTFSVL 694 (1155)
Q Consensus 620 d~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~D-----g~V~lWDi~~~~~l 694 (1155)
|+.+.... .+. . +........++.+ +++.++.|+.+ ..|.+||+.+.+..
T Consensus 181 d~~~~~W~--------------~~~--~-------~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 181 DPHTGHWT--------------NVT--P-------MATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp ETTTTEEE--------------EEC--C-------CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eCCCCcEE--------------eCC--C-------CCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 77654211 000 0 0000111122233 67788888775 45888999876654
Q ss_pred EEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCC-----ceEEEEECCCCce
Q 001109 695 FITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKD-----AHIVVCDSTTGHI 760 (1155)
Q Consensus 695 ~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~D-----g~I~vwd~~tG~~ 760 (1155)
..... .......-+.. .++++++.|+.+ ..|.++|.++.+-
T Consensus 236 ~~~~~---p~~r~~~~~~~----------------------~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 236 TVTSM---TTPRCYVGATV----------------------LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp EECCC---SSCCBSCEEEE----------------------ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred ECCCC---CCcccceeEEE----------------------ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 32111 00111111111 346778888766 4688899887653
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=81.97 E-value=11 Score=44.02 Aligned_cols=109 Identities=13% Similarity=0.183 Sum_probs=63.1
Q ss_pred CCcceeeccCCCCCceEEEEcCCCCEEEEEEcCCeEEEEccCCc--eEEEEcC-------CCCCEEEEEEEcC---CcEE
Q 001109 31 FDPRVTLHYGIPSTASILAFDHVQSLLAIGTQDGRIKVIGGDNI--EGLLVSP-------KQLAFKHLEFLQN---QGFL 98 (1155)
Q Consensus 31 ~~~~~~~~~G~~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~--~~~~~~~-------~~~~V~~l~Fs~d---g~~L 98 (1155)
|...... .|. .....|+|.|+|+++++-...++|++++..+. ..+.... .......|+|+|+ +++|
T Consensus 17 f~~~~~a-~~l-~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l 94 (454)
T 1cru_A 17 FDKKVIL-SNL-NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI 94 (454)
T ss_dssp SCEEEEE-CCC-SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred eEEEEEE-CCC-CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence 4444333 343 35779999999997766444357999875432 2222222 2346679999995 5555
Q ss_pred EEEec-------------CCeEEEEECCCC-------ceee-eecC--CCceeEEEEecCCCEEEE
Q 001109 99 VSISS-------------GNEIQLWDLEAR-------RITS-TLPW--ESNITAFSVIFGTSYMYI 141 (1155)
Q Consensus 99 vS~s~-------------Dg~I~vWDl~t~-------~~~~-~l~~--~~~Vtsva~spd~~~l~~ 141 (1155)
..+.. .+.|.-|++..+ +.+. .+.. ......++|.|||.+.++
T Consensus 95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 54432 235666665432 1121 2332 134688999999974443
No 330
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=81.42 E-value=51 Score=35.21 Aligned_cols=149 Identities=13% Similarity=0.019 Sum_probs=77.6
Q ss_pred cCcEEEEEECC-----CcEEEEeCCCCC---eeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC-----eE
Q 001109 550 VERLYIAGYRD-----GSTRIWDATYPT---LSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG-----LV 616 (1155)
Q Consensus 550 ~~~lLaTgs~D-----gtVrlWD~~~~~---l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG-----~V 616 (1155)
++.+++.|+.+ ..+.+||..+.. ...+..+.. ....-.++. .++++++.|+.++ .+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~---------~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~ 130 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV---------RRGLAGATT--LGDMIYVSGGFDGSRRHTSM 130 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS---------CCBSCEEEE--ETTEEEEECCBCSSCBCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC---------CccceeEEE--ECCEEEEEcccCCCcccceE
Confidence 45677777765 468888887765 433322111 111112222 2678888887653 56
Q ss_pred EEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEecCCc
Q 001109 617 WLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECS-----QVAMLDISTF 691 (1155)
Q Consensus 617 ~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg-----~V~lWDi~~~ 691 (1155)
.+||+.+.... . + ..+......-.++.+ +++.++.|+.++ .+.++|+.+.
T Consensus 131 ~~~d~~~~~W~----~-------~------------~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 131 ERYDPNIDQWS----M-------L------------GDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp EEEETTTTEEE----E-------E------------EECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EEEcCCCCeEE----E-------C------------CCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 77776654211 0 0 000000111122222 678888887653 5788888876
Q ss_pred cEEEEeccCCCCCCCe--eEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEEEEeCC-----ceEEEEECCCCcee
Q 001109 692 SVLFITDSLSNSNSPV--LYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLFFMTKD-----AHIVVCDSTTGHIL 761 (1155)
Q Consensus 692 ~~l~~~~~~~~h~~~V--~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~s~s~D-----g~I~vwd~~tG~~l 761 (1155)
+....... ..+. .+++. .++++++.|+.+ ..+.++|..+++-.
T Consensus 186 ~W~~~~~~----p~~r~~~~~~~-----------------------~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 186 HWTNVTPM----ATKRSGAGVAL-----------------------LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp EEEEECCC----SSCCBSCEEEE-----------------------ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred cEEeCCCC----CcccccceEEE-----------------------ECCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 55332111 1111 01111 246778888765 46889999886643
No 331
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=80.40 E-value=20 Score=40.04 Aligned_cols=75 Identities=16% Similarity=0.011 Sum_probs=44.6
Q ss_pred CeEEEEEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC---
Q 001109 594 SVSALEFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF--- 670 (1155)
Q Consensus 594 ~V~~lafspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd--- 670 (1155)
.-+.|+|.|||++++ +..+|.|++++ .. ... . +..+. ++.........|+|+||
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~-~g-~~~----~-------~~~~~---------v~~~g~~~p~gia~~pdf~~ 88 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR-EG-RLS----T-------YAELS---------VYHRGESGLLGLALHPRFPQ 88 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE-TT-EEE----E-------EEECC---------CCCSTTCSEEEEEECTTTTT
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE-CC-Ccc----E-------eecce---------EeecCCCCceeEEECCCCCC
Confidence 457999999998554 56679999888 22 110 0 00000 01112345688999998
Q ss_pred CCEEEEEeC-C-----CcEEEEecCCc
Q 001109 671 GARLAVGFE-C-----SQVAMLDISTF 691 (1155)
Q Consensus 671 g~~LAsGs~-D-----g~V~lWDi~~~ 691 (1155)
++.|.+... + +.|..|+....
T Consensus 89 ~g~lYv~~~~~~~~~~~~v~r~~~~~~ 115 (352)
T 2ism_A 89 EPYVYAYRTVAEGGLRNQVVRLRHLGE 115 (352)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEEECSS
T ss_pred CCEEEEEEecCCCCCccEEEEEEeCCC
Confidence 555544443 2 67888887753
No 332
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=79.92 E-value=62 Score=36.11 Aligned_cols=73 Identities=7% Similarity=-0.035 Sum_probs=43.5
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecC----CCeEEEEe--CCCeEEEE
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSV----TLNLAIGS--SSGLVWLY 619 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspd----g~~Lasgs--~dG~V~lw 619 (1155)
++.|++++|++-...|.|++++...+....+..+. .+ .. ........|+|+|| +.+.++-+ .+..|.-|
T Consensus 38 a~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~-~v---~~-~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 38 APLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP-GV---SP-SGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT-TC---CC-BTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred EEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC-ce---ee-cCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 78899999888866899999987666543332221 11 11 11236789999996 43334322 33445445
Q ss_pred Eecc
Q 001109 620 NLIK 623 (1155)
Q Consensus 620 d~~~ 623 (1155)
++..
T Consensus 113 ~~~~ 116 (347)
T 3das_A 113 LYDE 116 (347)
T ss_dssp EBCT
T ss_pred EeCC
Confidence 5543
No 333
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=77.77 E-value=87 Score=34.81 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=35.2
Q ss_pred CCeEEEEEc-------CCCCEEEEEeCCCcEEEEecCCc-cEEEEeccCCCCCCCeeEEEEe
Q 001109 660 SPICNLKFS-------NFGARLAVGFECSQVAMLDISTF-SVLFITDSLSNSNSPVLYLAVK 713 (1155)
Q Consensus 660 ~~VtslafS-------pdg~~LAsGs~Dg~V~lWDi~~~-~~l~~~~~~~~h~~~V~slafs 713 (1155)
.....++|. .+|.++++....+.|...++... ........+.+-...+..+++.
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~ 320 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVID 320 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEEC
Confidence 467889993 67877777777788888888753 3332222233334567888887
No 334
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.45 E-value=84 Score=34.69 Aligned_cols=106 Identities=10% Similarity=0.084 Sum_probs=70.0
Q ss_pred EEEEcC--CCCEEEEEEcCCeEEEEccCC-------ceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECC--C-
Q 001109 47 ILAFDH--VQSLLAIGTQDGRIKVIGGDN-------IEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLE--A- 114 (1155)
Q Consensus 47 ~lafsp--~g~lLAsgs~DG~I~vw~~~~-------~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~--t- 114 (1155)
.+.+.. +..+++..+.+|.||...... +.....+.....+..+........|+..+..|.+..+.+. .
T Consensus 100 ~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~ei 179 (327)
T 3uc1_A 100 VIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEAL 179 (327)
T ss_dssp EEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTS
T ss_pred EEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECccccc
Confidence 345553 567999999999999975332 1112223345567776666666788888999988877766 2
Q ss_pred ---Cc-----eeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEE
Q 001109 115 ---RR-----ITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLK 152 (1155)
Q Consensus 115 ---~~-----~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~ 152 (1155)
++ ..-.|.....|.++...+++.++++.++.|.++...
T Consensus 180 p~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 180 RPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp CCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred CcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 11 112233346788877777777899999999876543
No 335
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=77.16 E-value=35 Score=36.70 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=18.6
Q ss_pred CCcEEEEEeCC-----ceEEEEECCCCcee
Q 001109 737 KKETLFFMTKD-----AHIVVCDSTTGHIL 761 (1155)
Q Consensus 737 d~~~L~s~s~D-----g~I~vwd~~tG~~l 761 (1155)
++++++.|+.+ ..+.++|+.+.+-.
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 47788888754 57899999886643
No 336
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=76.62 E-value=64 Score=34.45 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=34.9
Q ss_pred cCcEEEEEECCC-----cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC-----eEEEE
Q 001109 550 VERLYIAGYRDG-----STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG-----LVWLY 619 (1155)
Q Consensus 550 ~~~lLaTgs~Dg-----tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG-----~V~lw 619 (1155)
++.+++.|+.++ .+.++|..+.....+..+.. .+..-.++. -++++++.|+.++ .+.+|
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~---------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 129 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD---------RRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAY 129 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS---------CCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc---------cccceEEEE--ECCEEEEEcCCCCCccCceEEEE
Confidence 456777777553 57788887765433221111 111112222 3678888888664 46666
Q ss_pred EeccC
Q 001109 620 NLIKS 624 (1155)
Q Consensus 620 d~~~~ 624 (1155)
|+.+.
T Consensus 130 d~~~~ 134 (302)
T 2xn4_A 130 NIKSN 134 (302)
T ss_dssp ETTTT
T ss_pred eCCCC
Confidence 66553
No 337
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=76.47 E-value=83 Score=36.43 Aligned_cols=55 Identities=5% Similarity=-0.003 Sum_probs=33.5
Q ss_pred ccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecC
Q 001109 546 EDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSV 603 (1155)
Q Consensus 546 ~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspd 603 (1155)
++.|+|++|++-...+.|++++...+....+..+...+. .......+..|+|+||
T Consensus 33 a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~---~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 33 LWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN---DADGQNGLLGFAFHPD 87 (454)
T ss_dssp EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC---CTTSSCSEEEEEECTT
T ss_pred EEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccc---ccCCCCceeEEEECCC
Confidence 788999988876544578888876565433333321100 0011236789999995
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=75.24 E-value=19 Score=37.58 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=58.9
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEccCCc---------eEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCc
Q 001109 46 SILAFDHVQSLLAIGTQDGRIKVIGGDNI---------EGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARR 116 (1155)
Q Consensus 46 s~lafsp~g~lLAsgs~DG~I~vw~~~~~---------~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~ 116 (1155)
.++.|+|+|.+.|+ .||.|.-++.++. ..+-. ..-..+..|.|.|+| .|.++. |+.+.-+-.-++.
T Consensus 91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~-~gw~~~~~lff~p~G-~Lyav~-dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGS-GGWSGFKFLFFHPNG-YLYAVH-GQQFYKALPPVSN 165 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEEC-SSGGGEEEEEECTTS-CEEEEE-TTEEEEECCCSST
T ss_pred eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEecc-CCCCceEEEEECCCc-eEEEEe-CCcEEecCCCCCC
Confidence 78999999999998 6699988876431 11111 112367999999995 677777 8875433322222
Q ss_pred ee-----ee-ec-CC-CceeEEEEecCCCEEEEEeCCCcE
Q 001109 117 IT-----ST-LP-WE-SNITAFSVIFGTSYMYIGDEYGMV 148 (1155)
Q Consensus 117 ~~-----~~-l~-~~-~~Vtsva~spd~~~l~~G~~dG~V 148 (1155)
.. .+ +- .. ...+-+.|.+++.+.++- +|.+
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 11 11 11 11 345567788888877766 6744
No 339
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=74.43 E-value=7.5 Score=46.11 Aligned_cols=104 Identities=10% Similarity=0.043 Sum_probs=68.5
Q ss_pred CCCCCceEEEEcCCCCEEEEEE-cCCeEEEEccCCce-------------EEEEcCCCCCEEEEEEEcCCcEEEEEecCC
Q 001109 40 GIPSTASILAFDHVQSLLAIGT-QDGRIKVIGGDNIE-------------GLLVSPKQLAFKHLEFLQNQGFLVSISSGN 105 (1155)
Q Consensus 40 G~~~~vs~lafsp~g~lLAsgs-~DG~I~vw~~~~~~-------------~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg 105 (1155)
-.+.....+-++|||+++.+++ .+.+|.|++..... .....+-...-.+.+|.++|.-..|.--|.
T Consensus 320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecc
Confidence 3456677789999999766554 57899999865321 122222234567899999973333444799
Q ss_pred eEEEEECCCC----------ceeeeecCCCceeEEEE------ecCCCEEEEEe
Q 001109 106 EIQLWDLEAR----------RITSTLPWESNITAFSV------IFGTSYMYIGD 143 (1155)
Q Consensus 106 ~I~vWDl~t~----------~~~~~l~~~~~Vtsva~------spd~~~l~~G~ 143 (1155)
+|..||++.. ..+..+..|-.+-.+.. .|||+||++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9999999764 34455555545555544 57888888764
No 340
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=72.50 E-value=72 Score=34.12 Aligned_cols=64 Identities=14% Similarity=0.044 Sum_probs=36.8
Q ss_pred cCcEEEEEECC----CcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC------CeEEEE
Q 001109 550 VERLYIAGYRD----GSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS------GLVWLY 619 (1155)
Q Consensus 550 ~~~lLaTgs~D----gtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d------G~V~lw 619 (1155)
++.+++.|+.+ ..+.++|..+.....+..+... ...-.++. -++++++.|+.+ ..+.+|
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~---------r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~ 123 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP---------RDSLAACA--AEGKIYTSGGSEVGNSALYLFECY 123 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC---------CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc---------ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEE
Confidence 55678888765 5677888877754333222111 11112222 377888888865 357777
Q ss_pred EeccC
Q 001109 620 NLIKS 624 (1155)
Q Consensus 620 d~~~~ 624 (1155)
|+.+.
T Consensus 124 d~~~~ 128 (306)
T 3ii7_A 124 DTRTE 128 (306)
T ss_dssp ETTTT
T ss_pred eCCCC
Confidence 77654
No 341
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=71.52 E-value=26 Score=38.07 Aligned_cols=25 Identities=8% Similarity=-0.043 Sum_probs=18.1
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCccEE
Q 001109 670 FGARLAVGFECS-----QVAMLDISTFSVL 694 (1155)
Q Consensus 670 dg~~LAsGs~Dg-----~V~lWDi~~~~~l 694 (1155)
+++.++.|+.++ .+.++|+.+.+..
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 678888888765 4778888876543
No 342
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=70.20 E-value=77 Score=34.02 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=56.9
Q ss_pred cCcEEEEEECC-----CcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC-----eEEEE
Q 001109 550 VERLYIAGYRD-----GSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG-----LVWLY 619 (1155)
Q Consensus 550 ~~~lLaTgs~D-----gtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG-----~V~lw 619 (1155)
++++++.|+.+ ..+..+|..+.....+..+. .....-.++.+ ++++++.|+.++ .+.+|
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~y 189 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML---------TRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECY 189 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS---------SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC---------ccccceEEEEE--CCEEEEEeCCCCCCcCceEEEE
Confidence 45677777644 35778888776533221111 11111122222 678888887653 47777
Q ss_pred EeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEecCCccEE
Q 001109 620 NLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFEC-----SQVAMLDISTFSVL 694 (1155)
Q Consensus 620 d~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~D-----g~V~lWDi~~~~~l 694 (1155)
|+.+.... .+. . +......-.++.+ +++.++.|+.+ ..|.+||+.+.+..
T Consensus 190 d~~~~~W~--------------~~~--~-------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 190 YPERNEWR--------------MIT--A-------MNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp ETTTTEEE--------------ECC--C-------CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eCCCCeEe--------------eCC--C-------CCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 77654211 000 0 0001111122333 67788888765 45888998876543
No 343
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=68.25 E-value=34 Score=39.96 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=59.4
Q ss_pred CCceEEEEcCCCC-EEEEEEcCCeEEEEccCCc---eEEEEcC----------CCCCEEEEEEEcC----CcEEEEEec-
Q 001109 43 STASILAFDHVQS-LLAIGTQDGRIKVIGGDNI---EGLLVSP----------KQLAFKHLEFLQN----QGFLVSISS- 103 (1155)
Q Consensus 43 ~~vs~lafsp~g~-lLAsgs~DG~I~vw~~~~~---~~~~~~~----------~~~~V~~l~Fs~d----g~~LvS~s~- 103 (1155)
.....|+|.|+|+ .|.++...|+|++++.++. ..+...+ .......|+|.|+ +...++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3567899999996 5666788999999975432 1111111 1346788999986 433333332
Q ss_pred -C----------CeEEEEECCCC----------ceeeeec---CCCceeEEEEecCCCEEEEEeCC
Q 001109 104 -G----------NEIQLWDLEAR----------RITSTLP---WESNITAFSVIFGTSYMYIGDEY 145 (1155)
Q Consensus 104 -D----------g~I~vWDl~t~----------~~~~~l~---~~~~Vtsva~spd~~~l~~G~~d 145 (1155)
+ +.|.-|.+..+ +.+..+. .......++|.|||. ||++..|
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence 1 24555666421 2233332 123467899999995 4444333
No 344
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=65.44 E-value=18 Score=33.17 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhcccccc
Q 001109 1098 VQGTAAAAAQAKDKLAERGEKLEMLRERTEEL---QNGAQNFADLAGELAKRMERRKWW 1153 (1155)
Q Consensus 1098 ~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l---~~~a~~F~~~a~~l~~~~~~~~ww 1153 (1155)
+.|+.+++.+=-..+.|-|+-|+.++...++- -..|..--+.|.+.+|+..+++||
T Consensus 30 I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i 88 (109)
T 3hd7_B 30 IRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 88 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccee
Confidence 56888888888889999999999888765443 345556666777888888888887
No 345
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=65.01 E-value=44 Score=36.07 Aligned_cols=24 Identities=13% Similarity=-0.254 Sum_probs=17.1
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCccE
Q 001109 670 FGARLAVGFECS-----QVAMLDISTFSV 693 (1155)
Q Consensus 670 dg~~LAsGs~Dg-----~V~lWDi~~~~~ 693 (1155)
+++.++.|+.++ .+.++|+.+.+.
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence 677888887653 477888877654
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=64.46 E-value=39 Score=37.29 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=19.4
Q ss_pred CCCcEEEEEeCCc------eEEEEECCCCceeeeee
Q 001109 736 TKKETLFFMTKDA------HIVVCDSTTGHILFSRS 765 (1155)
Q Consensus 736 pd~~~L~s~s~Dg------~I~vwd~~tG~~l~~~~ 765 (1155)
.++++++.|+.++ .|.+++..+++.+...+
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 3578888888653 45566888888766553
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=63.30 E-value=43 Score=39.82 Aligned_cols=83 Identities=14% Similarity=-0.001 Sum_probs=49.8
Q ss_pred EEEEEecCCCeEEEEe-CCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEE
Q 001109 596 SALEFCSVTLNLAIGS-SSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARL 674 (1155)
Q Consensus 596 ~~lafspdg~~Lasgs-~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~L 674 (1155)
-.+.++|||+++++++ -+.+|.+++++.-...-.-... .+...-.-+ .. ..-.-.-.+|.++|...
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~--~~~~~~~ae----------~e-~GlGPlHt~Fd~~G~aY 392 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLA--DPRDVIVGE----------PE-LGLGPLHTTFDGRGNAY 392 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCS--CGGGGEEEC----------CB-CCSCEEEEEECSSSEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcccc--CcccceEee----------cc-CCCcccEEEECCCCceE
Confidence 4678999999987766 4689999999863210000000 000000000 01 11123457899999666
Q ss_pred EEEeCCCcEEEEecCCc
Q 001109 675 AVGFECSQVAMLDISTF 691 (1155)
Q Consensus 675 AsGs~Dg~V~lWDi~~~ 691 (1155)
.+-..|..|.-|++...
T Consensus 393 TtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 393 TTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEETTTTEEEEEEHHHH
T ss_pred eeeeecceEEEEeccHH
Confidence 67778999999999864
No 348
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=62.95 E-value=24 Score=30.15 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcccccc
Q 001109 1098 VQGTAAAAAQAKDKLAERGEKLEMLRERTEE---LQNGAQNFADLAGELAKRMERRKWW 1153 (1155)
Q Consensus 1098 ~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~---l~~~a~~F~~~a~~l~~~~~~~~ww 1153 (1155)
+.|+.+++.+=-..|.+-|+-|+.++.-.+. =-..|..--..|.+.+++..+++||
T Consensus 19 i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 19 IRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 6688899999999999999998888655444 4445666667777777887888887
No 349
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=60.11 E-value=51 Score=35.68 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=35.0
Q ss_pred cCcEEEEEECC-------CcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC------CeE
Q 001109 550 VERLYIAGYRD-------GSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS------GLV 616 (1155)
Q Consensus 550 ~~~lLaTgs~D-------gtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d------G~V 616 (1155)
++.+++.|+.+ ..+.++|..+..-..+..+... ..+| .+ ...++++++.|+.+ ..+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~~----~~--~~~~~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK-----VYGH----NV--ISHNGMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC-----EESC----EE--EEETTEEEEECCEESSSCBCCCE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc-----cccc----EE--EEECCEEEEEcCCCCCCCccceE
Confidence 56688888764 2477778776653322211110 1122 12 22577777887742 347
Q ss_pred EEEEeccC
Q 001109 617 WLYNLIKS 624 (1155)
Q Consensus 617 ~lwd~~~~ 624 (1155)
.+||+.+.
T Consensus 178 ~~yd~~~~ 185 (318)
T 2woz_A 178 FIYNPKKG 185 (318)
T ss_dssp EEEETTTT
T ss_pred EEEcCCCC
Confidence 77877664
No 350
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=60.10 E-value=1.7e+02 Score=31.36 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=17.6
Q ss_pred CCcEEEEEeCCc-----eEEEEECCCCce
Q 001109 737 KKETLFFMTKDA-----HIVVCDSTTGHI 760 (1155)
Q Consensus 737 d~~~L~s~s~Dg-----~I~vwd~~tG~~ 760 (1155)
++++++.|+.++ .+.++|..+.+-
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 577888887654 588889887653
No 351
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=60.08 E-value=7.8 Score=43.40 Aligned_cols=105 Identities=11% Similarity=0.115 Sum_probs=61.5
Q ss_pred CEEEEEEcCCeEEEEccCCceEEEEcCCC--CCEEEEE-E-EcCCcEEEEE--ecCCeEEEEECCCCceeeeecCC----
Q 001109 55 SLLAIGTQDGRIKVIGGDNIEGLLVSPKQ--LAFKHLE-F-LQNQGFLVSI--SSGNEIQLWDLEARRITSTLPWE---- 124 (1155)
Q Consensus 55 ~lLAsgs~DG~I~vw~~~~~~~~~~~~~~--~~V~~l~-F-s~dg~~LvS~--s~Dg~I~vWDl~t~~~~~~l~~~---- 124 (1155)
.++.+++.||.|.-+|..+++........ .++.... . .+.++.++.+ +.||.|..+|..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47889999999999998888887776432 2222211 0 0112234444 57899999998887543322211
Q ss_pred -CceeE---EEE-e----cCCCEEEEEeCCCcEEEEEecCCCceee
Q 001109 125 -SNITA---FSV-I----FGTSYMYIGDEYGMVYVLKYDTEEGKLI 161 (1155)
Q Consensus 125 -~~Vts---va~-s----pd~~~l~~G~~dG~V~vw~~d~~~~~l~ 161 (1155)
+++.. ..+ . -.+..+|+|+.+|.+ ..+|..+|+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l--~ald~~tG~~~ 134 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIM--YTINMLNGEII 134 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEE--EEEETTTCCEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEE--EEEECCCCcEE
Confidence 22211 000 1 156788999999976 45576666654
No 352
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=57.73 E-value=1.1e+02 Score=32.81 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=17.7
Q ss_pred CCCCEEEEEeCC------CcEEEEecCCccEE
Q 001109 669 NFGARLAVGFEC------SQVAMLDISTFSVL 694 (1155)
Q Consensus 669 pdg~~LAsGs~D------g~V~lWDi~~~~~l 694 (1155)
.+++.++.|+.+ ..+.++|..+.+..
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 467777777642 35888898876543
No 353
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=56.44 E-value=2.4e+02 Score=31.26 Aligned_cols=107 Identities=7% Similarity=0.187 Sum_probs=76.3
Q ss_pred ceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC-ceeeeecC
Q 001109 45 ASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR-RITSTLPW 123 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~-~~~~~l~~ 123 (1155)
+-+.-.+|..+.||.-. ..++.||+.+..+.+..+.-...|..=.|..+ ..|+-++ +..|.-|+++.. .+...+..
T Consensus 69 AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 69 ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEEC
T ss_pred cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeec
Confidence 33455699999999886 57999999999888876655667888888766 4555555 678999999753 44444543
Q ss_pred C-----CceeEEEEecCCCEEEEEe---CC----CcEEEEEec
Q 001109 124 E-----SNITAFSVIFGTSYMYIGD---EY----GMVYVLKYD 154 (1155)
Q Consensus 124 ~-----~~Vtsva~spd~~~l~~G~---~d----G~V~vw~~d 154 (1155)
+ ..|.....+++.+|+++.+ .+ |.++++..+
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec
Confidence 3 5788888999999886533 22 556665443
No 354
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=55.92 E-value=2.2e+02 Score=30.69 Aligned_cols=99 Identities=10% Similarity=0.104 Sum_probs=56.5
Q ss_pred EcCCCCEEEEEEc--CCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecC--------------CeEEEEECC
Q 001109 50 FDHVQSLLAIGTQ--DGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSG--------------NEIQLWDLE 113 (1155)
Q Consensus 50 fsp~g~lLAsgs~--DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~D--------------g~I~vWDl~ 113 (1155)
|+++|.+|..... ++.|...+.++......... . +--|++++.+|+-+... ..|+..+++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 4456777776642 46676666665443322211 1 23568888888877643 467778887
Q ss_pred CCceeeeecCCCceeEEEEecCCCEEEEEe--CCCcEEEEEecCC
Q 001109 114 ARRITSTLPWESNITAFSVIFGTSYMYIGD--EYGMVYVLKYDTE 156 (1155)
Q Consensus 114 t~~~~~~l~~~~~Vtsva~spd~~~l~~G~--~dG~V~vw~~d~~ 156 (1155)
.++...-... .+.+|++++++|+-.. .++.-.|+..+.+
T Consensus 97 g~~~~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d 137 (302)
T 3s25_A 97 GHGSTVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRID 137 (302)
T ss_dssp SCCCEEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETT
T ss_pred CCcceEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECC
Confidence 6653221111 1236788999988766 3444344444443
No 355
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=55.84 E-value=3.6e+02 Score=33.00 Aligned_cols=466 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCCceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCC--CCCEEEEEEEcCCcEEEEEecCCeEEEEECCCCceee
Q 001109 42 PSTASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPK--QLAFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITS 119 (1155)
Q Consensus 42 ~~~vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~--~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~ 119 (1155)
...|++|.-|.+| +|=.|+.+| +..||............ ...|.++....+ +.|-.++.+| +..+|..+.+...
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~-g~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDN-TYLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETT-TEEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCC-CcEEEEeCCC-eEEEeCCCCEEEC
Q ss_pred eecCC-CceeEEEEecCCCEEEEEeCCCcEEEEEecCCCceeeccceeccCCceeeeceeEeeEeccccccccccccccc
Q 001109 120 TLPWE-SNITAFSVIFGTSYMYIGDEYGMVYVLKYDTEEGKLIHSPYYVPKDVIEVFNHLLLEFCPNHIQREKGKAAFNA 198 (1155)
Q Consensus 120 ~l~~~-~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 198 (1155)
..... ..|.++.. +...|.+|+.+| ++.|+...+++. .|......+.
T Consensus 97 ~~~~~~~~i~~i~~--~~g~lWigt~~G---l~~~~~~~~~~~--~~~~~~~~l~------------------------- 144 (758)
T 3ott_A 97 PETDFPTDVRTMAL--QGDTLWLGALNG---LYTYQLQSRKLT--SFDTRRNGLP------------------------- 144 (758)
T ss_dssp CSCCCCSCEEEEEE--ETTEEEEEETTE---EEEEETTTCCEE--EECHHHHCCS-------------------------
T ss_pred cccCCCceEEEEEe--cCCcEEEEcCCc---ceeEeCCCCeEE--EeccCCCCcC-------------------------
Q ss_pred ceeeecCCCCCCCcccccccccccceeeEEEEeecccccccccccEEEEEEcCCeEEEEEccCCeEEEEecccccccccc
Q 001109 199 SLLFYCMPPDESGFIDFIIRSKLRFFVEIRLLQFQKHVNSTLGFSQLLLVYANGLIILWDVSEDKVVLVRGSKDLQLKTE 278 (1155)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~~~v~~v~~~p~~~~~~~~~~~~llsg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~ 278 (1155)
...|.. +....++. |.+|+.+| +..+|..+++...........+.
T Consensus 145 ------------------~~~i~~-----i~~d~~g~---------lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~-- 189 (758)
T 3ott_A 145 ------------------NNTIYS-----IIRTKDNQ---------IYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQS-- 189 (758)
T ss_dssp ------------------CSCEEE-----EEECTTCC---------EEEEETTE-EEEEETTTTEEEEECCCCCTTCS--
T ss_pred ------------------CCeEEE-----EEEcCCCC---------EEEEeCCC-HhhCccCCCceEEecCCCccccc--
Q ss_pred cccCCCCCCCCCCcccccccccccCCccEEEEEecCCCeEEEEEcCCcEEEEEcCCCCCccccccCCCCCCcccccccCC
Q 001109 279 IVDDPSKNAGHNLSETVSDNEQVEKEISSLCWASNDGSVLAVGYVDGDILLWNLRAAASTKDWKSENSSTDFGKLQLSSG 358 (1155)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s~~~~~~~~~~~~~~~i~kl~l~~~ 358 (1155)
...|.+++.. +++..|-.|. ++.+..+|..+. ++.....
T Consensus 190 -----------------------~~~i~~i~~d-~~~~~lWigt-~~Gl~~~~~~~~----------------~~~~~~~ 228 (758)
T 3ott_A 190 -----------------------NLFVNSLLED-TTRQCVWIGT-EGYLFQYFPSTG----------------QIKQTEA 228 (758)
T ss_dssp -----------------------SCCEEEEEEE-TTTTEEEEEE-EEEEEEEETTTT----------------EEEEEEE
T ss_pred -----------------------cceeEEEEEE-CCCCEEEEEE-CCCCeEEcCCCC----------------eEEeccC
Q ss_pred CCCccEEEEEecccCCCCCCCceEEEecCCCCCCcceEEEEEccCCcccccceeceeeeecCCCceeEEEEecCCCCCCC
Q 001109 359 NRRLPVITLHWSAERSRNDCRGQLFVFGGDEIGSEEVLTMLYLNWSSRIESLKCIGRVDLERKGSFVDMVLLPNGMNESH 438 (1155)
Q Consensus 359 ~~~~pI~~l~w~~~~~~~~~~~~llv~gg~d~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~~~~~~~~~ 438 (1155)
.....|..+ ....++.+++... ..+.++...... ...+..............+...+....+
T Consensus 229 l~~~~i~~i-------~~d~~g~lWigT~------~Gl~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g---- 290 (758)
T 3ott_A 229 FHNNSIKSL-------ALDGNGDLLAGTD------NGLYVYHNDTTP-LQHIIHDSRNIQSLTNNIIWNIFADQEH---- 290 (758)
T ss_dssp EEEEEEEEE-------EECTTCCEEEEET------TEEEEECCTTSC-CEEECCCTTCTTSCSCSCEEEEEECTTC----
T ss_pred CCCCeEEEE-------EEcCCCCEEEEeC------CceeEEecCCCc-EEEEEcCCCCcCcCCcCeEEEEEEcCCC----
Q ss_pred ceeEEEEcCCCeeEEecCCCCCCcccccccccCCCcccCCcccccCCCcceEEEEeeecCCCchhHHHHHHHHhhccccC
Q 001109 439 GTLPCVLTNPGKLQVYDRPRFSPKKSQEKKKISSSSLQYPMLIPTIEPHMTVGKLCMVCRDGKLSVELSKTLSAAKVRAS 518 (1155)
Q Consensus 439 ~~~l~v~~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~h~~~It~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 518 (1155)
.+++++..| +.++....... .-...........-....+..+...
T Consensus 291 --~lWiGT~~G-l~~~~~~~~~~-------------~~~~~~~~~~~~~~~v~~i~~D~~g------------------- 335 (758)
T 3ott_A 291 --NIWLGTDYG-ISLSRYNSALQ-------------FIPISQITGTGDGNQFYSLFRDSKG------------------- 335 (758)
T ss_dssp --CEEEEESSS-EEEECCCC-CE-------------EEEHHHHSCSCCCCBEEEEEECTTC-------------------
T ss_pred --CEEEEeCCc-ccccccCCcee-------------EEecccCCCCCCCceEEEEEEcCCC-------------------
Q ss_pred CCCCccccCCCccCcccCCCCCcccccccCCcCcEEEEEECCCcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEE
Q 001109 519 HTPSTQLTGSTTKWPLTGGIPCQLHDAEDYLVERLYIAGYRDGSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSAL 598 (1155)
Q Consensus 519 ~~~s~~~~~~~~~w~l~gg~~~~~~l~~~s~~~~lLaTgs~DgtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~l 598 (1155)
.|-.|..+| +-.++...+.......+...-..-.+... .|.++
T Consensus 336 ----------------------------------~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~v~~i 378 (758)
T 3ott_A 336 ----------------------------------FYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHN--RIRHI 378 (758)
T ss_dssp ----------------------------------CEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCS--CEEEE
T ss_pred ----------------------------------CEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCC--ceEEE
Q ss_pred EEecCCCeEEEEeCCCeEEEEEeccCccccceeeeccCCceEEEecCCCCCceeEEeec-------CCCCeEEEEEcCCC
Q 001109 599 EFCSVTLNLAIGSSSGLVWLYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSV-------LNSPICNLKFSNFG 671 (1155)
Q Consensus 599 afspdg~~Lasgs~dG~V~lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~-------h~~~VtslafSpdg 671 (1155)
.-+.+|.+-+.. ++-+..|+..++.. ..+.. ....|.++...++|
T Consensus 379 ~~d~~g~lWigt--~~GL~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~v~~i~~d~~g 430 (758)
T 3ott_A 379 YEDKEQQLWIAT--DGSINRYDYATRQF--------------------------IHYNIVDNTGTYNTNWTYYIFEDTAG 430 (758)
T ss_dssp EECTTSCEEEEE--TTEEEEEETTTTEE--------------------------EEEEEECCC--CBSSSEEEEEECTTS
T ss_pred EECCCCCEEEEe--CCcHhhcCcCCCcE--------------------------EEeecCCCcCCCCCceEEEEEEcCCC
Q ss_pred CEEEEEeCCCcEEEEecCC------ccEE--EEeccCCCCCCC-eeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEE
Q 001109 672 ARLAVGFECSQVAMLDIST------FSVL--FITDSLSNSNSP-VLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLF 742 (1155)
Q Consensus 672 ~~LAsGs~Dg~V~lWDi~~------~~~l--~~~~~~~~h~~~-V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~ 742 (1155)
++.+ |+..+-|.++|..+ .... .......+.... |.++... .+|++-+
T Consensus 431 ~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d----------------------~~g~lWi 487 (758)
T 3ott_A 431 QLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPD----------------------NEGNVWV 487 (758)
T ss_dssp EEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEEC----------------------TTSCEEE
T ss_pred CEEE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEc----------------------CCCCEEE
Q ss_pred EEeCCceEEEEECCCCce
Q 001109 743 FMTKDAHIVVCDSTTGHI 760 (1155)
Q Consensus 743 s~s~Dg~I~vwd~~tG~~ 760 (1155)
.++..+-|..+|..+++.
T Consensus 488 ~~~t~~Gl~~~d~~~~~~ 505 (758)
T 3ott_A 488 LLYNNKGIDKINPRTREV 505 (758)
T ss_dssp EETTCSSEEEEETTTTEE
T ss_pred EccCCCCcEEEeCCCCce
No 356
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=54.72 E-value=3e+02 Score=31.79 Aligned_cols=108 Identities=7% Similarity=0.187 Sum_probs=75.9
Q ss_pred ceEEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC-ceeeeecC
Q 001109 45 ASILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR-RITSTLPW 123 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~-~~~~~l~~ 123 (1155)
+-+.-.+|..+.||.-. ..++.||+....+.+..+.-...|..=.|..+ ..|+-++ +..|.-|+++.. .+...+..
T Consensus 68 AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 68 ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheec
Confidence 44556789999999886 57999999999888766654556777777766 4455554 678999999753 34444543
Q ss_pred C-----CceeEEEEecCCCEEEEEe---C----CCcEEEEEecC
Q 001109 124 E-----SNITAFSVIFGTSYMYIGD---E----YGMVYVLKYDT 155 (1155)
Q Consensus 124 ~-----~~Vtsva~spd~~~l~~G~---~----dG~V~vw~~d~ 155 (1155)
+ ..|.....+++.+|+++.+ . .|.++++..+-
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 3 5788888999999987432 2 35566655443
No 357
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=53.08 E-value=3e+02 Score=36.75 Aligned_cols=106 Identities=7% Similarity=0.170 Sum_probs=71.9
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCCC-ceeeeecCC-
Q 001109 47 ILAFDHVQSLLAIGTQDGRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEAR-RITSTLPWE- 124 (1155)
Q Consensus 47 ~lafsp~g~lLAsgs~DG~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~-~~~~~l~~~- 124 (1155)
+.-.+|..+.||.-. ..++.||+....+.+..+.-..+|..=.|..+ ..|+-++ +..|.-|+++.. .+...+..+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 345688889999875 57999999988776655544557777777665 3455444 678999999743 333333322
Q ss_pred ----CceeEEEEecCCCEEEEEe-------CCCcEEEEEecC
Q 001109 125 ----SNITAFSVIFGTSYMYIGD-------EYGMVYVLKYDT 155 (1155)
Q Consensus 125 ----~~Vtsva~spd~~~l~~G~-------~dG~V~vw~~d~ 155 (1155)
..|.....+++.+|+++.+ -.|.++++..+-
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 5688888899999887533 246777765543
No 358
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=50.40 E-value=1.5e+02 Score=36.35 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=60.4
Q ss_pred cCcEEEEEECCC------cEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC--eEEEEEe
Q 001109 550 VERLYIAGYRDG------STRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG--LVWLYNL 621 (1155)
Q Consensus 550 ~~~lLaTgs~Dg------tVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG--~V~lwd~ 621 (1155)
++.+++.|+.++ .+.+||..+..-..+..+... ..+| +++.-.++++++.|+.++ .+.+||+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~-----R~~h-----~~~~~~~~~iyv~GG~~~~~~v~~yd~ 520 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT-----RFRH-----SACSLPDGNVLILGGVTEGPAMLLYNV 520 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC-----CBSC-----EEEECTTSCEEEECCBCSSCSEEEEET
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC-----cccc-----eEEEEcCCEEEEECCCCCCCCEEEEEC
Confidence 677888887553 467788776553222111100 0122 222324888999998765 6888888
Q ss_pred ccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCC-CCEEEEEeC--C-----CcEEEEecCCcc
Q 001109 622 IKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNF-GARLAVGFE--C-----SQVAMLDISTFS 692 (1155)
Q Consensus 622 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpd-g~~LAsGs~--D-----g~V~lWDi~~~~ 692 (1155)
.+.... .-...|.. ......-.++.+..+ ++.++.|+. + ..|.+||+.+..
T Consensus 521 ~t~~W~---------------~~~~~g~~-----p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 521 TEEIFK---------------DVTPKDEF-----FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTTEEE---------------ECCCSSGG-----GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCceE---------------EccCCCCC-----CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 764321 00000000 001111234555655 778888876 2 347788887765
No 359
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=50.17 E-value=55 Score=35.66 Aligned_cols=103 Identities=8% Similarity=0.041 Sum_probs=61.1
Q ss_pred EEEEcCCCCEEEEEE--cC--CeEEEEccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEec-CCeEEEEECCCCceeeee
Q 001109 47 ILAFDHVQSLLAIGT--QD--GRIKVIGGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISS-GNEIQLWDLEARRITSTL 121 (1155)
Q Consensus 47 ~lafsp~g~lLAsgs--~D--G~I~vw~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~-Dg~I~vWDl~t~~~~~~l 121 (1155)
+.+|+|++++|+-.. .+ ..|..-+.++........+. + .+|+++++.|+=.+. ..+|.+-++..+.....+
T Consensus 108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE
T ss_pred ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe
Confidence 357899999998876 23 45555555543332222222 2 467888888886665 577888888766533222
Q ss_pred cCCCceeEEEEecCCCEEEEEeCCCcEEEEEecCC
Q 001109 122 PWESNITAFSVIFGTSYMYIGDEYGMVYVLKYDTE 156 (1155)
Q Consensus 122 ~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d~~ 156 (1155)
. +.. ...++|++.+|+-....+.-+|+..+.+
T Consensus 184 ~--~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ld 215 (302)
T 3s25_A 184 D--CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNIN 215 (302)
T ss_dssp C--SCE-EEEEEEETTEEEEEEGGGTTEEEEECSS
T ss_pred C--CCc-cceeeecCCEEEEEEcCCCcEEEEEECC
Confidence 2 222 2346799999887654432234444443
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.09 E-value=50 Score=43.28 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=31.6
Q ss_pred CEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeec
Q 001109 85 AFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLP 122 (1155)
Q Consensus 85 ~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~ 122 (1155)
.+.+++..++..+|++.+.|+++||||+.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34455667788899999999999999999999987653
No 361
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=47.16 E-value=3.2e+02 Score=29.97 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=37.8
Q ss_pred CCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEe
Q 001109 658 LNSPICNLKFSN-------FGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVK 713 (1155)
Q Consensus 658 h~~~VtslafSp-------dg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs 713 (1155)
|......++|.. +|+++++....+.|...++..+..+.....+.+....+..+++.
T Consensus 269 ~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 269 DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 334678899864 57777777778888888887765544333333334578888887
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=47.00 E-value=2.9e+02 Score=29.39 Aligned_cols=106 Identities=9% Similarity=-0.009 Sum_probs=65.1
Q ss_pred CceEEEEcCCCCEEEEEEcCCeEEEE---ccCCceEE-EEcCCCCCEEEEEEEc--CCcEEEEEecCCeEEEEECCCCc-
Q 001109 44 TASILAFDHVQSLLAIGTQDGRIKVI---GGDNIEGL-LVSPKQLAFKHLEFLQ--NQGFLVSISSGNEIQLWDLEARR- 116 (1155)
Q Consensus 44 ~vs~lafsp~g~lLAsgs~DG~I~vw---~~~~~~~~-~~~~~~~~V~~l~Fs~--dg~~LvS~s~Dg~I~vWDl~t~~- 116 (1155)
.+..+......+.|..-+.+|+++-- +.+..... + +.....|..+.- + +..+++.++.+|.|+...+..-.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCC-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccccc-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 34444444455566677788887763 32221110 2 444556766643 4 45789999999999999876531
Q ss_pred -----eeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEE
Q 001109 117 -----ITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVL 151 (1155)
Q Consensus 117 -----~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw 151 (1155)
....++....+..+....+.+.++..+..|.++.+
T Consensus 103 ~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~ 142 (276)
T 3no0_A 103 KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARF 142 (276)
T ss_dssp CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEE
T ss_pred hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEE
Confidence 12233334566666666666788888999976444
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=45.77 E-value=3e+02 Score=29.28 Aligned_cols=111 Identities=9% Similarity=0.091 Sum_probs=70.4
Q ss_pred CCceEEEEcC-CCCEEEEEEcCCeEEEEccCCc------eEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC-
Q 001109 43 STASILAFDH-VQSLLAIGTQDGRIKVIGGDNI------EGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA- 114 (1155)
Q Consensus 43 ~~vs~lafsp-~g~lLAsgs~DG~I~vw~~~~~------~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t- 114 (1155)
..|.++-... +..+++..|.+|.|+....... .....+...+.+..+....+...|+..+..|.+...+...
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ei 147 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREV 147 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGS
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhC
Confidence 3444443322 4578999999999999864332 1112233345666666665556788889999988777532
Q ss_pred ---Cc-----eeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEe
Q 001109 115 ---RR-----ITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKY 153 (1155)
Q Consensus 115 ---~~-----~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~ 153 (1155)
++ ..-.+.....|.++...+++.++++.++.|.++...+
T Consensus 148 p~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~ 194 (276)
T 3no0_A 148 PPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISH 194 (276)
T ss_dssp CBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEG
T ss_pred CCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEH
Confidence 11 1112333467777777777788999999998765543
No 364
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=45.63 E-value=1.7e+02 Score=33.98 Aligned_cols=29 Identities=14% Similarity=-0.054 Sum_probs=22.7
Q ss_pred CeEEEEEecCCC-eEEEEeCCCeEEEEEec
Q 001109 594 SVSALEFCSVTL-NLAIGSSSGLVWLYNLI 622 (1155)
Q Consensus 594 ~V~~lafspdg~-~Lasgs~dG~V~lwd~~ 622 (1155)
.-++|+|.|||. .|.++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 458999999996 45666788999998643
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.54 E-value=23 Score=45.45 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=32.9
Q ss_pred CEEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeec
Q 001109 85 AFKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLP 122 (1155)
Q Consensus 85 ~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~ 122 (1155)
.+.++...++..+|++.+.|+++|+||+.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56677788888999999999999999999999887653
No 366
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=42.59 E-value=2.6e+02 Score=34.17 Aligned_cols=118 Identities=8% Similarity=0.060 Sum_probs=60.7
Q ss_pred CcCcEEEEEECC----CcEEEEeCCCCCeeeee-eeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCCC------eEE
Q 001109 549 LVERLYIAGYRD----GSTRIWDATYPTLSLIH-VFGSELPGIRTATESESVSALEFCSVTLNLAIGSSSG------LVW 617 (1155)
Q Consensus 549 ~~~~lLaTgs~D----gtVrlWD~~~~~l~~l~-~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~dG------~V~ 617 (1155)
.++.+++.|+.+ ..+.++|..+.....+. .+... . ....+..-.++.+..++++++.|+.++ .|.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~--~--~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSS--E--VPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCS--C--CCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCC--C--CCccccceEEEEEccCCEEEEEcCCCCCCCccccEE
Confidence 456688888764 35777887776543322 11000 0 001111222333332788888888653 466
Q ss_pred EEEeccCccccceeeeccCCceEEEecCCCCCceeEEeecCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEecCCccEE
Q 001109 618 LYNLIKSSNEETLNLVTETGKEVHILPGGDGPQCKALFSVLNSPICNLKFSNFGARLAVGFECS--QVAMLDISTFSVL 694 (1155)
Q Consensus 618 lwd~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~l~~h~~~VtslafSpdg~~LAsGs~Dg--~V~lWDi~~~~~l 694 (1155)
+||+.+.... .+ ...+.+ -..| +++.-.+++.++.|+.++ .+.+||..+.+..
T Consensus 472 ~yd~~t~~W~--------------~~--~~~p~~---R~~h-----~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~ 526 (695)
T 2zwa_A 472 IFDMKTREWS--------------MI--KSLSHT---RFRH-----SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK 526 (695)
T ss_dssp EEETTTTEEE--------------EC--CCCSBC---CBSC-----EEEECTTSCEEEECCBCSSCSEEEEETTTTEEE
T ss_pred EEeCCCCcEE--------------EC--CCCCCC---cccc-----eEEEEcCCEEEEECCCCCCCCEEEEECCCCceE
Confidence 7776653210 00 000000 0112 122224888999988766 6888998886543
No 367
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.74 E-value=2.7e+02 Score=35.51 Aligned_cols=39 Identities=18% Similarity=0.067 Sum_probs=35.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEecc
Q 001109 661 PICNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDS 699 (1155)
Q Consensus 661 ~VtslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~ 699 (1155)
.|.+++..++..+|.+=+.|+++|||++.++.++.+..+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 578888999999999999999999999999999987654
No 368
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=39.72 E-value=3.9e+02 Score=28.86 Aligned_cols=101 Identities=13% Similarity=0.170 Sum_probs=59.4
Q ss_pred CCCCEEEEEEcCCeEEEEccCCce-------EE--EEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECC---CC----
Q 001109 52 HVQSLLAIGTQDGRIKVIGGDNIE-------GL--LVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLE---AR---- 115 (1155)
Q Consensus 52 p~g~lLAsgs~DG~I~vw~~~~~~-------~~--~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~---t~---- 115 (1155)
|+..++.+.+.+|.||-....... .. ..+.....+..+........++..+..|.++-.... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 345678888999999886432211 11 122334566666666666788888888886655542 11
Q ss_pred --cee---eeecCCCceeEEEEec---CCCEEEEEeCCCcEEEEE
Q 001109 116 --RIT---STLPWESNITAFSVIF---GTSYMYIGDEYGMVYVLK 152 (1155)
Q Consensus 116 --~~~---~~l~~~~~Vtsva~sp---d~~~l~~G~~dG~V~vw~ 152 (1155)
..+ -.+.....|.++...+ +..+++..+++|.++...
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~ 130 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFE 130 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEE
Confidence 111 1123335566654443 467888899999876543
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=37.74 E-value=72 Score=41.79 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=28.1
Q ss_pred CCCcEEEEEeCCceEEEEECCCCceeeeeec
Q 001109 736 TKKETLFFMTKDAHIVVCDSTTGHILFSRSI 766 (1155)
Q Consensus 736 pd~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~ 766 (1155)
++..+|++-+.|+++||||+.+|.|+.+..+
T Consensus 247 ~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 247 STYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp TTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred CCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 5788999999999999999999999988754
No 370
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=36.53 E-value=2.6e+02 Score=30.30 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=28.6
Q ss_pred cCcEEEEEEC-C---------CcEEEEeCCCCCeeeeeeeCCCcCccccCCCCCCeEEEEEecCCCeEEEEeCC
Q 001109 550 VERLYIAGYR-D---------GSTRIWDATYPTLSLIHVFGSELPGIRTATESESVSALEFCSVTLNLAIGSSS 613 (1155)
Q Consensus 550 ~~~lLaTgs~-D---------gtVrlWD~~~~~l~~l~~l~~~~~~i~~~gh~~~V~~lafspdg~~Lasgs~d 613 (1155)
++++++.|+. + ..+.++|..+..-..+..+. + .....-.+ ...++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p-------~~r~~~~~--~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-P-------MGMAGHVT--FVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-S-------SCCSSEEE--EEETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-C-------cccccceE--EEECCEEEEEeCcC
Confidence 4557777765 2 46788888776532221111 0 01111122 22678888888865
No 371
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=35.57 E-value=2.2e+02 Score=31.61 Aligned_cols=104 Identities=13% Similarity=-0.004 Sum_probs=55.2
Q ss_pred CCceEEEEcC--CCCEEEEEEcCC----eEEEEccCC--ceEEEE---cCC---------CCCEEEEEEEcC--CcEEEE
Q 001109 43 STASILAFDH--VQSLLAIGTQDG----RIKVIGGDN--IEGLLV---SPK---------QLAFKHLEFLQN--QGFLVS 100 (1155)
Q Consensus 43 ~~vs~lafsp--~g~lLAsgs~DG----~I~vw~~~~--~~~~~~---~~~---------~~~V~~l~Fs~d--g~~LvS 100 (1155)
..|.+|+++| .+.+.|.+ ..| .|....-.+ .+.+.. ++. ...|.+|++.|. .+.|.+
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4689999999 56666544 444 455443222 122111 111 124778899862 456777
Q ss_pred EecCCeEEEEECCCCceeeeec--------------------CCCceeEEEEecC-CCEEEEEeCCCcE
Q 001109 101 ISSGNEIQLWDLEARRITSTLP--------------------WESNITAFSVIFG-TSYMYIGDEYGMV 148 (1155)
Q Consensus 101 ~s~Dg~I~vWDl~t~~~~~~l~--------------------~~~~Vtsva~spd-~~~l~~G~~dG~V 148 (1155)
+...+.|...+ +.++.-..+. ....|.++.++|. ...|++|+..+-|
T Consensus 134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl 201 (394)
T 3b7f_A 134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGV 201 (394)
T ss_dssp EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEE
T ss_pred EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCE
Confidence 66666554443 2222211110 1235789999984 4567777665544
No 372
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=33.59 E-value=39 Score=41.46 Aligned_cols=36 Identities=14% Similarity=0.434 Sum_probs=28.7
Q ss_pred EEEEEEEcCCcEEEEEecCCeEEEEECCCCceeeeecC
Q 001109 86 FKHLEFLQNQGFLVSISSGNEIQLWDLEARRITSTLPW 123 (1155)
Q Consensus 86 V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t~~~~~~l~~ 123 (1155)
|.++.+ +..+|++.+.|+++|+||+.+++++.+...
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 444443 468999999999999999999998876543
No 373
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=31.77 E-value=3.3e+02 Score=30.34 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=56.7
Q ss_pred CEEEEEEcCCeEEEEccCC-----------ceEEEEcC--CCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC-Cce---
Q 001109 55 SLLAIGTQDGRIKVIGGDN-----------IEGLLVSP--KQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA-RRI--- 117 (1155)
Q Consensus 55 ~lLAsgs~DG~I~vw~~~~-----------~~~~~~~~--~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t-~~~--- 117 (1155)
...+.-+.||+|..|+... ........ ....++.++.+......++.+.||.|..|-... +++
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 3444446788888886321 01111111 234567788888778888899999999997543 111
Q ss_pred -------eeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEe
Q 001109 118 -------TSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKY 153 (1155)
Q Consensus 118 -------~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~ 153 (1155)
...+..-..+.-+.+.....+.++-+++|.|+.|-.
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~ 185 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK 185 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCC
Confidence 011111111223344445666677788999988843
No 374
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=30.43 E-value=2.4e+02 Score=25.08 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=39.0
Q ss_pred CCHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001109 1084 RTVDEIKAKYKKSEVQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFA 1137 (1155)
Q Consensus 1084 ~~~~~i~~~~~~~~~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~ 1137 (1155)
....++..+ |+++..-|.+=|+.|-.+-.+||.+..++--|.+-|..+.
T Consensus 36 ~tfarLc~~-----Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~ 84 (96)
T 1t3j_A 36 TTFARLCQQ-----VDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLE 84 (96)
T ss_dssp CHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455677777 8899999999999999999999988777766666655443
No 375
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=29.72 E-value=5.1e+02 Score=34.61 Aligned_cols=95 Identities=9% Similarity=0.098 Sum_probs=60.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCccEEEEeccCCCCCCCeeEEEEeecCCCCccccCCCCCCCCCCCCCCCcEEE
Q 001109 663 CNLKFSNFGARLAVGFECSQVAMLDISTFSVLFITDSLSNSNSPVLYLAVKSLSDTSNLTISPKDSDINSSNDTKKETLF 742 (1155)
Q Consensus 663 tslafSpdg~~LAsGs~Dg~V~lWDi~~~~~l~~~~~~~~h~~~V~slafs~~~~~~~~~~~~~~~~~~~~~~pd~~~L~ 742 (1155)
.++..|+....+-.-+.-|.|.++|+.++++++..++ ...+|--.+.. .+.+.++
T Consensus 262 v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri---s~~~iF~~~~~---------------------~~~~g~~- 316 (1630)
T 1xi4_A 262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPH---------------------EATAGII- 316 (1630)
T ss_pred eEEEeccccCEEEEEecCceEEEEecccchhhhhccc---cCCceEEeccC---------------------CCCCceE-
Confidence 4688899888888899999999999999999987765 44454333322 1223333
Q ss_pred EEeCCceEEEEECCCCceeeeeecccC-CCceEEEEEEeCC
Q 001109 743 FMTKDAHIVVCDSTTGHILFSRSIHHQ-ESNAIYMCIIEGG 782 (1155)
Q Consensus 743 s~s~Dg~I~vwd~~tG~~l~~~~~~~~-~~~al~~~~ld~~ 782 (1155)
...+.|.|.-..++.-+++.-..-... +..|+.|..-.+.
T Consensus 317 ~vnr~G~vl~v~v~~~~iv~yi~~~l~~~~la~~~a~r~~l 357 (1630)
T 1xi4_A 317 GVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNL 357 (1630)
T ss_pred EEcCCceEEEEEEccchhhhhHhhccCCHHHHHHHHHhcCC
Confidence 345777777777776666654422222 4455555444333
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=29.59 E-value=1e+02 Score=37.09 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=40.1
Q ss_pred EEEEEEEcCCcEEEEEecC------------CeEEEEECCCCceeeeecC--CCceeEEEEecCCCEEEEE
Q 001109 86 FKHLEFLQNQGFLVSISSG------------NEIQLWDLEARRITSTLPW--ESNITAFSVIFGTSYMYIG 142 (1155)
Q Consensus 86 V~~l~Fs~dg~~LvS~s~D------------g~I~vWDl~t~~~~~~l~~--~~~Vtsva~spd~~~l~~G 142 (1155)
.-.|.|++.|+.++.-+.+ +.+.+-+..++++..-+.. .+.++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4689999998766654432 3355556667766544444 3789999999999998864
No 377
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=29.54 E-value=5.8e+02 Score=27.72 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=64.6
Q ss_pred EEEEcC--CCCEEEEEEcCCeEEEEccC--------CceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC--
Q 001109 47 ILAFDH--VQSLLAIGTQDGRIKVIGGD--------NIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA-- 114 (1155)
Q Consensus 47 ~lafsp--~g~lLAsgs~DG~I~vw~~~--------~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t-- 114 (1155)
.+.+++ ++.+|+..+.+|.+|..... .+.....+...+.+..+....+...|+..+.+|.+..++...
T Consensus 97 ~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~ 176 (323)
T 1wp5_A 97 AIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVS 176 (323)
T ss_dssp EEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSC
T ss_pred EEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCc
Confidence 344543 35678899999999997542 122222233345666666665556788889999988888643
Q ss_pred --Cc---eee--eecCCCceeEEEEecCCC-EEEEEeCCCcEEEE
Q 001109 115 --RR---ITS--TLPWESNITAFSVIFGTS-YMYIGDEYGMVYVL 151 (1155)
Q Consensus 115 --~~---~~~--~l~~~~~Vtsva~spd~~-~l~~G~~dG~V~vw 151 (1155)
++ -+. .+.....|.++...+++. .+++.++.|..+..
T Consensus 177 ~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~ 221 (323)
T 1wp5_A 177 IVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKM 221 (323)
T ss_dssp BCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEE
T ss_pred ccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEE
Confidence 21 111 233335677766555555 78888888876544
No 378
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=27.39 E-value=1.9e+02 Score=25.42 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001109 1100 GTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKR 1146 (1155)
Q Consensus 1100 ~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~ 1146 (1155)
.++.-+.+-.+-+.++-||+=+=-+|-++|.+.+++.+..|.+.+++
T Consensus 9 ~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~ 55 (91)
T 3hd7_A 9 QTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 55 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555544
No 379
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=27.35 E-value=5.7e+02 Score=27.48 Aligned_cols=110 Identities=9% Similarity=0.017 Sum_probs=0.0
Q ss_pred ceEEEEc--CCCCEEEEEEcCCeEEEEccC-------CceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC-
Q 001109 45 ASILAFD--HVQSLLAIGTQDGRIKVIGGD-------NIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA- 114 (1155)
Q Consensus 45 vs~lafs--p~g~lLAsgs~DG~I~vw~~~-------~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t- 114 (1155)
+..+.+. +++.+|+..+.+|.+|..... .+.....+...+.+..+....+...|+..+.+|.+..++...
T Consensus 98 ~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v 177 (307)
T 1zi0_A 98 TAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSV 177 (307)
T ss_dssp EEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHc
Q ss_pred --------CceeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEEEec
Q 001109 115 --------RRITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVLKYD 154 (1155)
Q Consensus 115 --------~~~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw~~d 154 (1155)
|...-.+.....|.++....++..+++.++.|.++-..++
T Consensus 178 ~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 178 RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
No 380
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=26.29 E-value=6.6e+02 Score=27.32 Aligned_cols=107 Identities=9% Similarity=0.062 Sum_probs=62.1
Q ss_pred ceEEEEcCCCCEEEEEEcCCeEEEE---ccCC------ceEE---EEcCCCCCEEEEEEEc---CCcEEEEEecCCeEEE
Q 001109 45 ASILAFDHVQSLLAIGTQDGRIKVI---GGDN------IEGL---LVSPKQLAFKHLEFLQ---NQGFLVSISSGNEIQL 109 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~DG~I~vw---~~~~------~~~~---~~~~~~~~V~~l~Fs~---dg~~LvS~s~Dg~I~v 109 (1155)
+..+......+.|..-+..|+++-. +.+. +..+ +.+.....|.++...+ +..+++.++.+|.|+.
T Consensus 44 ~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr 123 (327)
T 3uc1_A 44 VAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKK 123 (327)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEE
Confidence 3333333444555566677766654 3322 1211 1122344566654443 4679999999999999
Q ss_pred EECCCCc-------eeeeecCCCceeEEEEecCCCEEEEEeCCCcEEEE
Q 001109 110 WDLEARR-------ITSTLPWESNITAFSVIFGTSYMYIGDEYGMVYVL 151 (1155)
Q Consensus 110 WDl~t~~-------~~~~l~~~~~Vtsva~spd~~~l~~G~~dG~V~vw 151 (1155)
-.+..-. ....++....+..+........++..+..|.+..+
T Consensus 124 ~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 124 SKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp EEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred eEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 8876421 12233334566666666666788888899976444
No 381
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=25.58 E-value=6.1e+02 Score=26.71 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=17.5
Q ss_pred CCccEEEEEecCCCeEEEEEcCCcEEEEEcCC
Q 001109 303 KEISSLCWASNDGSVLAVGYVDGDILLWNLRA 334 (1155)
Q Consensus 303 ~~V~sl~~s~pdG~~lasg~~DG~I~lWd~~s 334 (1155)
..|..++-. ....+|.. ||.|+.|-...
T Consensus 219 ~~v~~i~~G--~~h~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 219 SGVSAIASG--EWYSLALK--NGKVIAWGSSR 246 (282)
T ss_dssp SSCCEEEEC--SSCEEEEE--TTEEEEESTTC
T ss_pred CCceEEEcC--CCEEEEEE--CCEEEEecCCC
Confidence 457777643 33444444 99999996543
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=25.33 E-value=48 Score=40.69 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=26.6
Q ss_pred CCcEEEEEeCCceEEEEECCCCceeeeeec
Q 001109 737 KKETLFFMTKDAHIVVCDSTTGHILFSRSI 766 (1155)
Q Consensus 737 d~~~L~s~s~Dg~I~vwd~~tG~~l~~~~~ 766 (1155)
+..+|++-+.|.++|+||+.||.++.+..+
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 467899999999999999999999888743
No 383
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=24.85 E-value=7.5e+02 Score=27.46 Aligned_cols=110 Identities=10% Similarity=0.046 Sum_probs=0.0
Q ss_pred ceEEEEc--CCCCEEEEEEcCCeEEEE-------ccCCceEEEEcCCCCCEEEEEEEcCCcEEEEEecCCeEEEEECCC-
Q 001109 45 ASILAFD--HVQSLLAIGTQDGRIKVI-------GGDNIEGLLVSPKQLAFKHLEFLQNQGFLVSISSGNEIQLWDLEA- 114 (1155)
Q Consensus 45 vs~lafs--p~g~lLAsgs~DG~I~vw-------~~~~~~~~~~~~~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWDl~t- 114 (1155)
+..+.+. ..+.+|+.++..|.+|.. ....+.....+.....+..+....+...|+.++.+|.+..++...
T Consensus 102 v~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v 181 (370)
T 3l6v_A 102 QAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 181 (370)
T ss_dssp EEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEcccc
Q ss_pred --------CceeeeecCCCceeEEEEec-----------------------------------CCCEEEEEeCCCcEEEE
Q 001109 115 --------RRITSTLPWESNITAFSVIF-----------------------------------GTSYMYIGDEYGMVYVL 151 (1155)
Q Consensus 115 --------~~~~~~l~~~~~Vtsva~sp-----------------------------------d~~~l~~G~~dG~V~vw 151 (1155)
|-..-.+.....|.++...+ ++.++++.++.|..+..
T Consensus 182 ~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt 261 (370)
T 3l6v_A 182 RSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRT 261 (370)
T ss_dssp CBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEE
T ss_pred CccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEE
Q ss_pred Eec
Q 001109 152 KYD 154 (1155)
Q Consensus 152 ~~d 154 (1155)
.++
T Consensus 262 ~~~ 264 (370)
T 3l6v_A 262 PLA 264 (370)
T ss_dssp EGG
T ss_pred EHH
No 384
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=24.13 E-value=2.8e+02 Score=22.31 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001109 1098 VQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRME 1148 (1155)
Q Consensus 1098 ~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~ 1148 (1155)
+..+..-+.+-.+-+.++-+++=.=-+|-+.|.+-++.....|...+++..
T Consensus 6 l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~ 56 (63)
T 1n7s_A 6 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAA 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777778888888888888888888888889888888888887643
No 385
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.05 E-value=2.9e+02 Score=22.45 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001109 1099 QGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKR 1146 (1155)
Q Consensus 1099 ~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~ 1146 (1155)
+.+++-+.+..+-+.++-+|+-+=-+|-+.|++-+......|.+.++.
T Consensus 7 ~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~ 54 (63)
T 1urq_A 7 EGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKH 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566666666666666666666666666666555543
No 386
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=23.50 E-value=2.9e+02 Score=22.14 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001109 1098 VQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRM 1147 (1155)
Q Consensus 1098 ~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~ 1147 (1155)
+..+..-+.+-.+-+.++-+|+=.=-+|-+.|.+-+++....|...+++-
T Consensus 4 l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a 53 (61)
T 3b5n_A 4 TAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777778888888887777888888888888888888877763
No 387
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=22.69 E-value=8e+02 Score=27.02 Aligned_cols=106 Identities=8% Similarity=0.094 Sum_probs=59.5
Q ss_pred ceEEEEcCCCCEEEEEEcCCeEEEEccCC-----------ceEEEEcC--CCCCEEEEEEEcCCcEEEEEecCCeEEEEE
Q 001109 45 ASILAFDHVQSLLAIGTQDGRIKVIGGDN-----------IEGLLVSP--KQLAFKHLEFLQNQGFLVSISSGNEIQLWD 111 (1155)
Q Consensus 45 vs~lafsp~g~lLAsgs~DG~I~vw~~~~-----------~~~~~~~~--~~~~V~~l~Fs~dg~~LvS~s~Dg~I~vWD 111 (1155)
+..++++.-....+.-+.||+|+.|+... ........ ....|..++ ......++...||.|..|-
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va--~G~~hs~alt~~G~v~~wG 184 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA--AGGAHSACVTAAGDLYTWG 184 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE--ECSSEEEEEETTSCEEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE--eCcCeEEEEeCCCeEEEeC
Confidence 44566766666555567899999996432 01111111 122454444 4445677788899999997
Q ss_pred CCC-Ccee----------eeec--CCCceeEEEEecCCCEEEEEeCCCcEEEEE
Q 001109 112 LEA-RRIT----------STLP--WESNITAFSVIFGTSYMYIGDEYGMVYVLK 152 (1155)
Q Consensus 112 l~t-~~~~----------~~l~--~~~~Vtsva~spd~~~l~~G~~dG~V~vw~ 152 (1155)
... +++- ..+. ....|..++......+.++-+++|.|+.|-
T Consensus 185 ~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG 238 (389)
T 3kci_A 185 KGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG 238 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEE
T ss_pred CCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEe
Confidence 543 2210 0111 113455565544345666667899887774
No 388
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=21.93 E-value=1.8e+02 Score=34.74 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=41.6
Q ss_pred CEEEEEEEcCCcEEEEEec------------CCeEEEEECCCCceeeeecCC--CceeEEEEecCCCEEEEE
Q 001109 85 AFKHLEFLQNQGFLVSISS------------GNEIQLWDLEARRITSTLPWE--SNITAFSVIFGTSYMYIG 142 (1155)
Q Consensus 85 ~V~~l~Fs~dg~~LvS~s~------------Dg~I~vWDl~t~~~~~~l~~~--~~Vtsva~spd~~~l~~G 142 (1155)
..-.|.|.++|...++.+. .+.|...+..++++..-+..+ ..++.++|+||+++|++.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4568999999876664432 125666777778765555433 678999999999999876
No 389
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.37 E-value=2.8e+02 Score=24.57 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001109 1100 GTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKR 1146 (1155)
Q Consensus 1100 ~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~ 1146 (1155)
.++.-+.+-.+-+.++-+|+=+=-+|-+.|.+-++.....|.+.+++
T Consensus 34 ~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~ 80 (96)
T 1sfc_A 34 QTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555555555555555555555544
No 390
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=20.87 E-value=3.5e+02 Score=22.50 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001109 1099 QGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAK 1145 (1155)
Q Consensus 1099 ~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~ 1145 (1155)
.+...+-...+..|.+-||+|..++...+.+......=.+..+.|+.
T Consensus 22 ~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 22 QDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46677777888899999999999888888888877766666666653
No 391
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.12 E-value=3.5e+02 Score=21.93 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001109 1098 VQGTAAAAAQAKDKLAERGEKLEMLRERTEELQNGAQNFADLAGELAKRME 1148 (1155)
Q Consensus 1098 ~~~~~~~m~~n~~k~~er~~kl~~l~~~t~~l~~~a~~F~~~a~~l~~~~~ 1148 (1155)
+..+..-+.+-.+-|.++-+|+=.=-+|-+.|.+.++.....|...+++-.
T Consensus 11 l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~ 61 (65)
T 1gl2_A 11 VRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888899999999999999999999999999999999988743
No 392
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=20.01 E-value=51 Score=22.05 Aligned_cols=17 Identities=41% Similarity=0.384 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhhHHH
Q 001109 1104 AAAQAKDKLAERGEKLE 1120 (1155)
Q Consensus 1104 ~m~~n~~k~~er~~kl~ 1120 (1155)
-++.|+|.|+||-||++
T Consensus 10 QIK~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 10 QIKQKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45678999999998875
Done!