Query 001110
Match_columns 1155
No_of_seqs 692 out of 3848
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 16:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1839 Uncharacterized protei 100.0 9.8E-31 2.1E-35 324.8 25.3 389 1-391 727-1162(1236)
2 KOG1840 Kinesin light chain [C 99.9 3E-25 6.5E-30 263.3 33.9 295 156-451 195-491 (508)
3 PF12807 eIF3_p135: Translatio 99.9 1.1E-26 2.4E-31 242.0 10.6 132 1-133 17-169 (169)
4 KOG1840 Kinesin light chain [C 99.9 6E-21 1.3E-25 226.9 30.3 254 131-388 214-468 (508)
5 KOG4626 O-linked N-acetylgluco 99.9 1.2E-21 2.5E-26 226.7 18.1 249 150-444 242-490 (966)
6 KOG4626 O-linked N-acetylgluco 99.9 3.2E-21 7E-26 223.1 13.8 242 157-444 215-456 (966)
7 KOG1839 Uncharacterized protei 99.8 5.5E-20 1.2E-24 229.8 2.8 461 1-587 546-1014(1236)
8 TIGR00990 3a0801s09 mitochondr 99.8 8.3E-17 1.8E-21 199.1 29.0 248 156-444 327-576 (615)
9 KOG1130 Predicted G-alpha GTPa 99.7 2.1E-16 4.7E-21 177.0 19.5 295 158-462 53-367 (639)
10 TIGR00990 3a0801s09 mitochondr 99.7 1.8E-15 4E-20 187.2 26.3 243 161-443 161-500 (615)
11 KOG1130 Predicted G-alpha GTPa 99.7 6.1E-16 1.3E-20 173.5 16.7 268 108-391 48-336 (639)
12 KOG1126 DNA-binding cell divis 99.6 1.6E-15 3.5E-20 179.7 16.2 249 158-444 351-625 (638)
13 TIGR02521 type_IV_pilW type IV 99.6 1.4E-13 3E-18 144.2 25.9 171 157-357 28-198 (234)
14 PRK11788 tetratricopeptide rep 99.6 4.5E-13 9.8E-18 155.3 26.5 246 158-442 67-314 (389)
15 PRK11788 tetratricopeptide rep 99.6 2.9E-13 6.4E-18 156.8 24.9 244 160-441 35-280 (389)
16 PRK15174 Vi polysaccharide exp 99.5 6.3E-13 1.4E-17 165.9 27.1 249 158-444 108-386 (656)
17 PRK11189 lipoprotein NlpI; Pro 99.5 1.7E-12 3.6E-17 147.1 24.3 228 174-441 40-267 (296)
18 TIGR02917 PEP_TPR_lipo putativ 99.5 1.9E-12 4.2E-17 162.3 27.2 175 159-357 21-222 (899)
19 KOG2002 TPR-containing nuclear 99.5 7.2E-13 1.6E-17 162.0 22.1 330 117-476 250-678 (1018)
20 PRK15174 Vi polysaccharide exp 99.5 3.2E-12 7E-17 159.6 27.8 246 159-442 75-350 (656)
21 COG3063 PilF Tfp pilus assembl 99.5 1.2E-12 2.6E-17 139.6 20.0 169 157-355 32-200 (250)
22 PRK11447 cellulose synthase su 99.5 4.8E-12 1E-16 167.4 29.3 254 157-442 300-635 (1157)
23 KOG0547 Translocase of outer m 99.5 1.9E-12 4.2E-17 148.8 20.4 247 158-444 324-571 (606)
24 TIGR02917 PEP_TPR_lipo putativ 99.5 7.8E-12 1.7E-16 156.9 27.6 244 160-442 465-735 (899)
25 PRK11447 cellulose synthase su 99.5 2.8E-12 6.1E-17 169.5 24.6 240 162-438 463-739 (1157)
26 KOG1155 Anaphase-promoting com 99.5 6.1E-12 1.3E-16 144.2 23.0 191 166-389 336-526 (559)
27 KOG1126 DNA-binding cell divis 99.4 2E-12 4.3E-17 153.8 17.0 231 172-442 331-589 (638)
28 PRK09782 bacteriophage N4 rece 99.4 9.5E-12 2.1E-16 160.1 23.9 236 159-444 476-711 (987)
29 PRK12370 invasion protein regu 99.4 2.2E-11 4.7E-16 149.4 24.3 171 154-355 289-468 (553)
30 PRK12370 invasion protein regu 99.4 3.7E-11 8E-16 147.4 25.5 236 159-441 257-504 (553)
31 PRK11189 lipoprotein NlpI; Pro 99.4 1.6E-10 3.5E-15 131.1 28.4 175 158-357 62-265 (296)
32 COG3063 PilF Tfp pilus assembl 99.4 3.3E-11 7.1E-16 128.8 21.2 208 199-442 32-239 (250)
33 KOG1173 Anaphase-promoting com 99.4 8E-12 1.7E-16 146.2 17.7 216 155-443 307-522 (611)
34 TIGR03302 OM_YfiO outer membra 99.4 4.4E-11 9.5E-16 129.9 22.2 178 158-355 31-230 (235)
35 PRK09782 bacteriophage N4 rece 99.4 4.8E-11 1E-15 153.7 25.2 233 163-443 512-744 (987)
36 KOG2003 TPR repeat-containing 99.4 4.6E-11 1E-15 135.5 20.8 232 164-441 458-691 (840)
37 KOG1155 Anaphase-promoting com 99.3 4.2E-11 9E-16 137.4 20.6 243 165-439 267-536 (559)
38 TIGR02521 type_IV_pilW type IV 99.3 5.8E-11 1.3E-15 124.4 20.4 167 160-356 65-231 (234)
39 PRK04841 transcriptional regul 99.3 4.2E-10 9.1E-15 145.1 31.3 273 160-444 452-765 (903)
40 TIGR03302 OM_YfiO outer membra 99.3 4.7E-10 1E-14 121.8 22.8 182 198-439 29-232 (235)
41 KOG1129 TPR repeat-containing 99.3 5.5E-11 1.2E-15 131.3 14.8 235 164-444 227-463 (478)
42 KOG0547 Translocase of outer m 99.3 1.5E-09 3.2E-14 125.5 26.7 198 162-393 362-560 (606)
43 PRK10049 pgaA outer membrane p 99.2 1.9E-09 4E-14 137.3 28.8 248 159-441 48-341 (765)
44 KOG2002 TPR-containing nuclear 99.2 1.4E-09 3.1E-14 133.7 25.9 251 160-443 270-529 (1018)
45 KOG1125 TPR repeat-containing 99.2 3.2E-10 7E-15 133.5 19.0 215 162-448 287-536 (579)
46 KOG1941 Acetylcholine receptor 99.2 6.4E-09 1.4E-13 116.6 28.1 272 160-441 83-362 (518)
47 PRK10049 pgaA outer membrane p 99.2 3.2E-09 7E-14 135.2 29.3 156 164-352 19-174 (765)
48 KOG2003 TPR repeat-containing 99.2 9.7E-10 2.1E-14 125.0 21.1 234 163-441 422-657 (840)
49 KOG1173 Anaphase-promoting com 99.2 3.4E-10 7.3E-15 132.8 17.0 194 149-372 335-528 (611)
50 PF13429 TPR_15: Tetratricopep 99.2 3.8E-11 8.3E-16 134.2 8.8 235 163-442 11-246 (280)
51 cd05804 StaR_like StaR_like; a 99.2 3.2E-09 7E-14 121.8 24.2 171 160-355 43-213 (355)
52 PF14938 SNAP: Soluble NSF att 99.2 9.3E-10 2E-14 124.0 19.2 225 200-437 33-264 (282)
53 PF14938 SNAP: Soluble NSF att 99.2 1.7E-09 3.6E-14 122.0 21.0 190 160-357 35-225 (282)
54 KOG1125 TPR repeat-containing 99.1 7.5E-10 1.6E-14 130.5 17.5 188 151-362 310-532 (579)
55 KOG0624 dsRNA-activated protei 99.1 8.9E-09 1.9E-13 114.8 24.4 262 154-444 32-375 (504)
56 PRK04841 transcriptional regul 99.1 2.1E-08 4.5E-13 129.6 32.0 193 163-360 412-605 (903)
57 KOG1941 Acetylcholine receptor 99.1 2E-09 4.2E-14 120.6 19.3 272 160-444 6-280 (518)
58 COG2956 Predicted N-acetylgluc 99.1 3.8E-09 8.3E-14 117.4 20.5 243 164-442 39-281 (389)
59 cd05804 StaR_like StaR_like; a 99.1 1.1E-08 2.4E-13 117.3 22.2 211 159-439 5-215 (355)
60 KOG2076 RNA polymerase III tra 99.1 4.4E-08 9.5E-13 120.4 27.9 171 158-356 137-308 (895)
61 PF13424 TPR_12: Tetratricopep 99.1 8.3E-10 1.8E-14 99.7 9.7 78 240-318 1-78 (78)
62 KOG1129 TPR repeat-containing 99.1 8.7E-10 1.9E-14 122.0 11.6 198 157-391 253-452 (478)
63 PF13424 TPR_12: Tetratricopep 99.0 9.9E-10 2.1E-14 99.2 10.0 78 282-360 1-78 (78)
64 PF13429 TPR_15: Tetratricopep 99.0 1.6E-09 3.4E-14 121.3 12.9 169 160-358 110-278 (280)
65 PRK15359 type III secretion sy 99.0 4.4E-09 9.5E-14 107.1 13.6 110 180-316 13-122 (144)
66 PRK15179 Vi polysaccharide bio 99.0 1.1E-08 2.3E-13 128.0 19.5 162 168-358 57-218 (694)
67 TIGR00540 hemY_coli hemY prote 99.0 9.7E-08 2.1E-12 113.2 25.9 247 159-441 83-368 (409)
68 PRK10747 putative protoheme IX 99.0 9.1E-08 2E-12 113.1 24.8 244 159-443 83-361 (398)
69 KOG0550 Molecular chaperone (D 99.0 2.7E-08 5.8E-13 113.6 18.9 176 157-358 166-351 (486)
70 TIGR00540 hemY_coli hemY prote 99.0 2E-07 4.4E-12 110.4 27.4 250 160-444 118-404 (409)
71 KOG0548 Molecular co-chaperone 99.0 2.6E-08 5.5E-13 117.0 19.2 181 159-357 223-421 (539)
72 CHL00033 ycf3 photosystem I as 98.9 1.4E-08 3.1E-13 105.3 14.2 131 241-377 32-162 (168)
73 COG2956 Predicted N-acetylgluc 98.9 1.9E-07 4.2E-12 104.1 23.4 173 160-358 107-279 (389)
74 PRK15179 Vi polysaccharide bio 98.9 3.4E-08 7.3E-13 123.6 19.2 137 156-316 82-218 (694)
75 KOG4162 Predicted calmodulin-b 98.9 3.4E-07 7.5E-12 111.2 26.8 259 149-444 467-788 (799)
76 CHL00033 ycf3 photosystem I as 98.9 2.7E-08 5.8E-13 103.3 15.3 123 199-327 32-154 (168)
77 KOG1174 Anaphase-promoting com 98.9 1.3E-07 2.7E-12 107.9 21.3 249 159-444 231-505 (564)
78 PRK10370 formate-dependent nit 98.9 5.6E-08 1.2E-12 104.3 17.3 120 173-316 52-174 (198)
79 PRK15359 type III secretion sy 98.9 1.9E-08 4.1E-13 102.5 12.8 112 163-298 27-138 (144)
80 PRK10747 putative protoheme IX 98.9 1.3E-06 2.8E-11 103.4 30.1 238 163-442 121-393 (398)
81 PRK10370 formate-dependent nit 98.8 1.5E-07 3.1E-12 101.2 19.0 119 215-357 52-173 (198)
82 PLN02789 farnesyltranstransfer 98.8 1E-06 2.2E-11 101.3 26.3 179 161-376 38-226 (320)
83 KOG0553 TPR repeat-containing 98.8 5.1E-08 1.1E-12 108.3 13.4 124 156-303 77-200 (304)
84 PF12569 NARP1: NMDA receptor- 98.8 2.7E-06 5.8E-11 103.4 29.3 147 285-448 193-343 (517)
85 KOG1174 Anaphase-promoting com 98.8 6.7E-07 1.4E-11 102.2 22.1 166 161-358 301-468 (564)
86 TIGR02552 LcrH_SycD type III s 98.8 1.4E-07 3E-12 93.4 14.9 103 198-316 13-115 (135)
87 PF13525 YfiO: Outer membrane 98.8 9.2E-07 2E-11 95.2 22.1 170 159-348 4-198 (203)
88 PRK14574 hmsH outer membrane p 98.7 6.9E-07 1.5E-11 113.9 23.6 174 159-370 33-206 (822)
89 PRK02603 photosystem I assembl 98.7 2.7E-07 6E-12 96.3 16.5 127 239-378 30-163 (172)
90 KOG0548 Molecular co-chaperone 98.7 3.4E-07 7.5E-12 107.8 18.6 197 158-379 255-469 (539)
91 KOG0495 HAT repeat protein [RN 98.7 4E-07 8.7E-12 108.4 18.7 229 165-444 589-851 (913)
92 PRK14720 transcript cleavage f 98.7 5.9E-07 1.3E-11 113.7 20.9 143 154-315 25-178 (906)
93 KOG0550 Molecular chaperone (D 98.7 1.5E-07 3.2E-12 107.7 14.0 260 154-442 43-353 (486)
94 KOG1156 N-terminal acetyltrans 98.7 8.2E-07 1.8E-11 106.3 20.7 246 161-444 8-253 (700)
95 PRK15363 pathogenicity island 98.7 3.8E-07 8.3E-12 93.8 15.7 102 157-274 32-133 (157)
96 PRK10866 outer membrane biogen 98.7 2.4E-06 5.2E-11 94.8 22.8 174 159-352 31-236 (243)
97 PRK02603 photosystem I assembl 98.7 5.8E-07 1.3E-11 93.9 17.0 114 197-323 30-150 (172)
98 PLN03218 maturation of RBCL 1; 98.7 3E-06 6.5E-11 110.8 27.3 169 161-355 508-676 (1060)
99 PRK15363 pathogenicity island 98.7 6E-07 1.3E-11 92.4 16.1 102 199-316 32-133 (157)
100 TIGR02552 LcrH_SycD type III s 98.7 3E-07 6.5E-12 91.0 13.6 110 224-357 5-114 (135)
101 KOG2076 RNA polymerase III tra 98.7 1.3E-05 2.8E-10 99.3 29.9 241 161-428 208-544 (895)
102 PLN03088 SGT1, suppressor of 98.7 3E-07 6.4E-12 107.3 15.0 96 162-273 4-99 (356)
103 PLN03218 maturation of RBCL 1; 98.6 5.3E-06 1.1E-10 108.6 27.6 240 160-439 542-783 (1060)
104 COG5010 TadD Flp pilus assembl 98.6 5.1E-07 1.1E-11 98.8 15.2 156 164-351 70-225 (257)
105 TIGR02795 tol_pal_ybgF tol-pal 98.6 5.2E-07 1.1E-11 86.3 13.6 113 245-372 3-115 (119)
106 PLN02789 farnesyltranstransfer 98.6 2.5E-06 5.4E-11 98.3 19.8 187 155-381 66-266 (320)
107 TIGR02795 tol_pal_ybgF tol-pal 98.6 9.7E-07 2.1E-11 84.4 13.9 104 203-316 3-106 (119)
108 PF09976 TPR_21: Tetratricopep 98.6 3.6E-06 7.8E-11 85.5 18.8 136 159-313 10-145 (145)
109 KOG0553 TPR repeat-containing 98.6 3.9E-07 8.5E-12 101.4 12.5 121 200-344 79-199 (304)
110 PRK14574 hmsH outer membrane p 98.6 1.4E-05 3E-10 102.2 27.4 260 160-444 102-450 (822)
111 KOG2376 Signal recognition par 98.6 7.3E-06 1.6E-10 97.5 22.9 219 161-440 13-254 (652)
112 KOG1128 Uncharacterized conser 98.5 2.2E-06 4.7E-11 103.9 17.8 169 167-366 457-625 (777)
113 PLN03081 pentatricopeptide (PP 98.5 7.9E-06 1.7E-10 103.4 23.8 128 161-313 291-418 (697)
114 KOG2376 Signal recognition par 98.5 6.3E-05 1.4E-09 89.9 29.0 160 163-337 82-271 (652)
115 KOG1585 Protein required for f 98.5 4.5E-05 9.8E-10 82.9 25.4 226 196-433 25-250 (308)
116 PLN03081 pentatricopeptide (PP 98.5 5.7E-06 1.2E-10 104.7 22.0 57 288-355 362-418 (697)
117 PLN03088 SGT1, suppressor of 98.5 1E-06 2.2E-11 102.9 14.1 96 205-316 5-100 (356)
118 PF09976 TPR_21: Tetratricopep 98.5 8.9E-06 1.9E-10 82.7 17.9 123 214-355 23-145 (145)
119 KOG1127 TPR repeat-containing 98.5 6E-06 1.3E-10 102.5 19.3 234 173-444 471-705 (1238)
120 COG5010 TadD Flp pilus assembl 98.4 8.5E-06 1.8E-10 89.4 18.4 163 198-391 63-225 (257)
121 KOG0624 dsRNA-activated protei 98.4 1.9E-05 4.2E-10 88.8 20.9 209 197-440 33-253 (504)
122 KOG0495 HAT repeat protein [RN 98.4 2.9E-05 6.4E-10 93.1 23.2 225 173-444 563-787 (913)
123 PF13525 YfiO: Outer membrane 98.4 2.1E-05 4.5E-10 84.8 19.9 160 243-443 4-174 (203)
124 KOG1585 Protein required for f 98.4 4.9E-05 1.1E-09 82.6 22.0 190 159-357 30-219 (308)
125 COG4783 Putative Zn-dependent 98.4 2.6E-05 5.6E-10 91.7 21.3 119 163-305 309-427 (484)
126 PRK10866 outer membrane biogen 98.4 6.8E-05 1.5E-09 83.2 23.7 174 201-434 31-236 (243)
127 cd00189 TPR Tetratricopeptide 98.4 2.4E-06 5.3E-11 75.0 9.8 96 204-315 2-97 (100)
128 PLN03077 Protein ECB2; Provisi 98.4 8.1E-05 1.8E-09 96.5 27.4 27 410-436 691-717 (857)
129 KOG2047 mRNA splicing factor [ 98.4 0.00017 3.7E-09 86.7 27.3 213 213-443 358-583 (835)
130 cd00189 TPR Tetratricopeptide 98.3 3.6E-06 7.9E-11 73.9 10.2 96 162-273 2-97 (100)
131 PRK10153 DNA-binding transcrip 98.3 1.2E-05 2.5E-10 98.3 16.4 138 156-316 335-483 (517)
132 PLN03077 Protein ECB2; Provisi 98.3 7.3E-05 1.6E-09 96.9 24.6 237 162-436 325-651 (857)
133 KOG3617 WD40 and TPR repeat-co 98.3 0.00016 3.4E-09 88.4 25.1 288 176-474 835-1206(1416)
134 PF13414 TPR_11: TPR repeat; P 98.2 4.5E-06 9.7E-11 73.5 8.6 65 201-273 2-67 (69)
135 KOG1127 TPR repeat-containing 98.2 0.00031 6.7E-09 87.8 27.1 218 204-443 852-1071(1238)
136 KOG4162 Predicted calmodulin-b 98.2 0.00059 1.3E-08 83.9 29.1 260 165-451 289-554 (799)
137 KOG1128 Uncharacterized conser 98.2 1.5E-05 3.2E-10 96.9 14.9 220 164-444 402-621 (777)
138 KOG0543 FKBP-type peptidyl-pro 98.2 1.8E-05 3.9E-10 91.5 14.9 126 158-299 206-338 (397)
139 PF13414 TPR_11: TPR repeat; P 98.2 6E-06 1.3E-10 72.6 8.7 65 243-315 2-67 (69)
140 KOG3060 Uncharacterized conser 98.2 0.00018 3.8E-09 78.9 21.0 159 173-357 25-183 (289)
141 PRK14720 transcript cleavage f 98.2 3.2E-05 7E-10 98.4 17.7 224 194-444 23-257 (906)
142 PF12895 Apc3: Anaphase-promot 98.2 9.3E-06 2E-10 74.7 9.6 84 172-270 1-84 (84)
143 COG0457 NrfG FOG: TPR repeat [ 98.2 0.0005 1.1E-08 68.7 22.8 173 160-358 59-232 (291)
144 COG3071 HemY Uncharacterized e 98.2 0.00053 1.1E-08 79.2 25.2 244 160-444 84-362 (400)
145 KOG0543 FKBP-type peptidyl-pro 98.2 2E-05 4.3E-10 91.1 13.8 106 203-316 209-321 (397)
146 KOG3616 Selective LIM binding 98.2 0.0023 4.9E-08 77.6 30.9 190 160-356 661-910 (1636)
147 PF12688 TPR_5: Tetratrico pep 98.2 3.1E-05 6.7E-10 77.0 13.3 102 203-314 2-103 (120)
148 PRK10803 tol-pal system protei 98.1 3.5E-05 7.6E-10 86.5 15.2 104 245-358 143-247 (263)
149 PRK10803 tol-pal system protei 98.1 4E-05 8.7E-10 86.0 15.6 104 203-316 143-247 (263)
150 PF12895 Apc3: Anaphase-promot 98.1 1.3E-05 2.9E-10 73.7 9.8 83 215-312 2-84 (84)
151 PF12688 TPR_5: Tetratrico pep 98.1 3.7E-05 8E-10 76.4 13.0 102 245-356 2-103 (120)
152 KOG3060 Uncharacterized conser 98.1 0.0019 4.1E-08 71.1 25.9 164 163-358 55-221 (289)
153 KOG1156 N-terminal acetyltrans 98.1 0.00016 3.5E-09 87.2 19.3 172 158-353 39-210 (700)
154 KOG4340 Uncharacterized conser 98.0 0.00015 3.3E-09 80.5 17.2 162 171-356 21-206 (459)
155 KOG3617 WD40 and TPR repeat-co 98.0 0.00051 1.1E-08 84.1 22.5 160 169-356 809-995 (1416)
156 PRK10153 DNA-binding transcrip 98.0 0.00012 2.6E-09 89.6 17.0 140 201-368 338-488 (517)
157 PRK11906 transcriptional regul 98.0 0.00023 5E-09 84.3 18.5 163 162-353 257-432 (458)
158 KOG4555 TPR repeat-containing 98.0 0.00029 6.2E-09 70.3 15.6 102 160-273 43-144 (175)
159 COG4783 Putative Zn-dependent 97.9 0.00051 1.1E-08 81.1 20.0 134 199-356 303-436 (484)
160 COG4105 ComL DNA uptake lipopr 97.9 0.0014 3.1E-08 72.5 21.6 174 160-350 34-226 (254)
161 KOG3785 Uncharacterized conser 97.9 0.001 2.2E-08 75.5 20.2 152 161-352 58-209 (557)
162 KOG1586 Protein required for f 97.9 0.0019 4.1E-08 70.3 21.3 140 209-356 41-182 (288)
163 KOG1586 Protein required for f 97.9 0.0013 2.8E-08 71.5 20.0 184 160-353 34-220 (288)
164 PF12569 NARP1: NMDA receptor- 97.9 0.00081 1.8E-08 82.2 20.6 146 157-320 191-339 (517)
165 KOG3616 Selective LIM binding 97.8 0.009 2E-07 72.7 27.9 192 245-439 662-911 (1636)
166 COG1729 Uncharacterized protei 97.8 0.00014 3E-09 80.9 12.0 105 159-273 140-244 (262)
167 COG2909 MalT ATP-dependent tra 97.8 0.013 2.7E-07 73.9 29.5 307 108-435 373-684 (894)
168 KOG2300 Uncharacterized conser 97.8 0.0056 1.2E-07 72.2 24.8 250 171-435 286-552 (629)
169 PF13432 TPR_16: Tetratricopep 97.8 6.4E-05 1.4E-09 65.4 7.1 60 164-231 1-60 (65)
170 PRK15331 chaperone protein Sic 97.8 0.00017 3.7E-09 75.0 11.0 102 155-272 32-133 (165)
171 PF13432 TPR_16: Tetratricopep 97.8 9.5E-05 2.1E-09 64.4 7.8 61 248-316 1-61 (65)
172 KOG2047 mRNA splicing factor [ 97.8 0.002 4.3E-08 77.9 21.0 177 168-358 355-541 (835)
173 KOG4555 TPR repeat-containing 97.8 0.001 2.2E-08 66.5 15.6 100 204-315 45-144 (175)
174 COG3071 HemY Uncharacterized e 97.7 0.076 1.6E-06 62.0 32.7 238 161-442 119-393 (400)
175 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0029 6.3E-08 63.1 19.3 175 156-358 91-266 (291)
176 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00052 1.1E-08 81.2 15.8 115 169-310 178-292 (395)
177 PF08631 SPO22: Meiosis protei 97.7 0.005 1.1E-07 69.7 23.0 142 170-316 3-151 (278)
178 COG4785 NlpI Lipoprotein NlpI, 97.7 0.0014 3.1E-08 70.4 16.9 203 198-439 61-266 (297)
179 KOG2300 Uncharacterized conser 97.7 0.0022 4.7E-08 75.6 19.7 199 166-381 329-536 (629)
180 PF04733 Coatomer_E: Coatomer 97.7 0.00025 5.3E-09 80.9 11.6 170 163-374 105-277 (290)
181 KOG1070 rRNA processing protei 97.7 0.0012 2.7E-08 85.0 18.6 215 198-444 1454-1668(1710)
182 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00018 4E-09 84.9 10.0 72 239-315 70-141 (453)
183 COG1729 Uncharacterized protei 97.6 0.00059 1.3E-08 76.0 13.1 102 247-358 144-245 (262)
184 COG4785 NlpI Lipoprotein NlpI, 97.6 0.0009 2E-08 71.9 13.5 172 158-356 63-265 (297)
185 COG4235 Cytochrome c biogenesi 97.6 0.0016 3.5E-08 73.4 16.2 120 198-337 152-274 (287)
186 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.00086 1.9E-08 79.4 14.8 118 208-352 175-292 (395)
187 PRK11906 transcriptional regul 97.6 0.00089 1.9E-08 79.4 14.7 147 204-376 257-415 (458)
188 KOG3785 Uncharacterized conser 97.6 0.0017 3.8E-08 73.7 16.0 148 170-356 32-179 (557)
189 KOG1070 rRNA processing protei 97.6 0.0047 1E-07 80.0 21.1 171 161-357 1459-1629(1710)
190 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00033 7.2E-09 82.8 9.9 72 197-273 70-141 (453)
191 COG5159 RPN6 26S proteasome re 97.5 0.011 2.3E-07 66.0 20.5 264 164-437 7-312 (421)
192 KOG4234 TPR repeat-containing 97.5 0.0015 3.2E-08 69.6 12.8 104 159-273 94-197 (271)
193 KOG1915 Cell cycle control pro 97.4 0.071 1.5E-06 63.2 27.1 247 163-439 76-351 (677)
194 PF13374 TPR_10: Tetratricopep 97.4 0.00023 4.9E-09 56.1 5.0 41 244-284 2-42 (42)
195 KOG4648 Uncharacterized conser 97.4 0.00058 1.3E-08 77.2 9.8 98 160-273 97-194 (536)
196 PRK15331 chaperone protein Sic 97.4 0.00082 1.8E-08 70.0 10.2 102 198-315 33-134 (165)
197 PF13512 TPR_18: Tetratricopep 97.4 0.0021 4.5E-08 65.7 12.8 104 160-273 10-128 (142)
198 PF10345 Cohesin_load: Cohesin 97.4 0.14 3E-06 64.5 31.5 156 198-361 55-212 (608)
199 KOG4340 Uncharacterized conser 97.4 0.006 1.3E-07 68.2 16.7 175 162-352 46-265 (459)
200 COG4700 Uncharacterized protei 97.4 0.021 4.6E-07 60.5 19.5 157 171-358 67-223 (251)
201 KOG4234 TPR repeat-containing 97.3 0.0018 3.9E-08 69.0 11.7 100 247-357 98-197 (271)
202 COG4235 Cytochrome c biogenesi 97.3 0.0026 5.7E-08 71.7 13.8 119 150-288 146-267 (287)
203 KOG2471 TPR repeat-containing 97.3 0.011 2.3E-07 69.9 18.9 116 160-276 240-367 (696)
204 PF13512 TPR_18: Tetratricopep 97.3 0.0033 7.3E-08 64.2 12.8 106 201-316 9-129 (142)
205 PF13374 TPR_10: Tetratricopep 97.3 0.00039 8.5E-09 54.7 4.9 42 201-242 1-42 (42)
206 PF10300 DUF3808: Protein of u 97.3 0.013 2.9E-07 71.2 19.9 180 172-374 200-393 (468)
207 KOG2796 Uncharacterized conser 97.2 0.022 4.7E-07 63.1 18.6 159 159-339 176-334 (366)
208 KOG4642 Chaperone-dependent E3 97.2 0.0016 3.6E-08 70.9 9.5 105 157-277 7-111 (284)
209 KOG1915 Cell cycle control pro 97.2 0.26 5.6E-06 58.7 27.6 189 158-355 205-431 (677)
210 PF14559 TPR_19: Tetratricopep 97.1 0.0012 2.6E-08 57.7 6.7 54 170-231 1-54 (68)
211 PF13371 TPR_9: Tetratricopept 97.1 0.0023 4.9E-08 56.8 8.5 58 208-273 1-58 (73)
212 COG4105 ComL DNA uptake lipopr 97.1 0.042 9.1E-07 61.1 19.8 158 244-439 34-196 (254)
213 PF13371 TPR_9: Tetratricopept 97.1 0.0021 4.5E-08 57.0 8.0 59 250-316 1-59 (73)
214 PF12968 DUF3856: Domain of Un 97.1 0.025 5.4E-07 56.0 15.8 121 200-321 5-135 (144)
215 PF09986 DUF2225: Uncharacteri 97.1 0.0055 1.2E-07 67.0 12.8 101 172-273 89-194 (214)
216 COG2909 MalT ATP-dependent tra 97.1 0.042 9.1E-07 69.4 21.7 191 159-360 457-650 (894)
217 PF13281 DUF4071: Domain of un 97.1 0.066 1.4E-06 63.0 22.1 216 173-444 112-339 (374)
218 PF04184 ST7: ST7 protein; In 97.0 0.024 5.1E-07 67.8 18.0 127 169-311 177-320 (539)
219 KOG3081 Vesicle coat complex C 97.0 0.058 1.3E-06 60.2 19.1 142 204-381 110-255 (299)
220 PF10300 DUF3808: Protein of u 97.0 0.025 5.5E-07 68.8 18.2 133 174-325 247-386 (468)
221 PF14559 TPR_19: Tetratricopep 97.0 0.0021 4.6E-08 56.1 6.6 53 213-273 2-54 (68)
222 PF10345 Cohesin_load: Cohesin 97.0 0.15 3.3E-06 64.1 25.6 197 157-361 56-258 (608)
223 PF09986 DUF2225: Uncharacteri 97.0 0.0082 1.8E-07 65.7 12.5 102 214-316 89-195 (214)
224 KOG4648 Uncharacterized conser 96.9 0.0028 6E-08 71.9 8.9 96 205-316 100-195 (536)
225 KOG1463 26S proteasome regulat 96.9 0.072 1.6E-06 61.0 19.8 262 161-438 49-315 (411)
226 PF04733 Coatomer_E: Coatomer 96.9 0.011 2.4E-07 67.5 13.2 138 161-327 132-272 (290)
227 KOG2041 WD40 repeat protein [G 96.8 0.41 8.8E-06 59.0 26.0 27 79-105 689-715 (1189)
228 COG4700 Uncharacterized protei 96.8 0.023 5.1E-07 60.2 14.0 133 162-316 91-223 (251)
229 PF12968 DUF3856: Domain of Un 96.8 0.081 1.8E-06 52.5 16.5 116 163-279 12-135 (144)
230 PF02259 FAT: FAT domain; Int 96.8 0.14 3.1E-06 58.7 21.9 253 161-444 30-292 (352)
231 KOG4642 Chaperone-dependent E3 96.8 0.0048 1E-07 67.4 8.8 100 204-319 12-111 (284)
232 PF10602 RPN7: 26S proteasome 96.7 0.036 7.9E-07 58.9 14.7 127 223-358 17-143 (177)
233 KOG2796 Uncharacterized conser 96.6 0.12 2.7E-06 57.5 18.2 139 202-357 177-315 (366)
234 COG3898 Uncharacterized membra 96.6 0.44 9.6E-06 55.7 23.1 231 166-442 126-361 (531)
235 PF03704 BTAD: Bacterial trans 96.6 0.056 1.2E-06 54.7 14.8 113 161-281 7-133 (146)
236 KOG2471 TPR repeat-containing 96.5 0.012 2.7E-07 69.4 10.6 131 200-339 238-380 (696)
237 PF08631 SPO22: Meiosis protei 96.4 0.73 1.6E-05 52.3 24.0 79 157-236 32-117 (278)
238 KOG1464 COP9 signalosome, subu 96.3 0.041 8.9E-07 61.1 12.4 226 215-451 40-272 (440)
239 PF03704 BTAD: Bacterial trans 96.3 0.095 2.1E-06 53.0 14.6 109 207-323 11-133 (146)
240 KOG2610 Uncharacterized conser 96.3 0.078 1.7E-06 60.6 14.8 167 165-355 108-274 (491)
241 KOG3081 Vesicle coat complex C 96.3 1.2 2.6E-05 50.0 23.7 171 163-372 111-281 (299)
242 PF04184 ST7: ST7 protein; In 96.3 0.07 1.5E-06 64.0 14.7 130 208-353 174-320 (539)
243 KOG0545 Aryl-hydrocarbon recep 96.2 0.053 1.1E-06 59.7 12.2 106 160-273 178-293 (329)
244 PF10602 RPN7: 26S proteasome 96.2 0.051 1.1E-06 57.8 12.0 117 151-274 27-143 (177)
245 KOG1464 COP9 signalosome, subu 96.1 0.95 2.1E-05 50.7 21.3 207 161-377 66-277 (440)
246 KOG0551 Hsp90 co-chaperone CNS 95.9 0.046 9.9E-07 62.5 10.3 104 159-274 80-183 (390)
247 PF12862 Apc5: Anaphase-promot 95.8 0.13 2.8E-06 48.8 11.9 82 254-337 8-90 (94)
248 KOG1550 Extracellular protein 95.8 0.13 2.8E-06 64.0 15.1 149 176-357 228-393 (552)
249 KOG0545 Aryl-hydrocarbon recep 95.8 0.089 1.9E-06 58.0 11.6 107 202-316 178-294 (329)
250 PF12862 Apc5: Anaphase-promot 95.8 0.11 2.4E-06 49.2 11.2 83 169-253 7-90 (94)
251 COG0790 FOG: TPR repeat, SEL1 95.7 0.98 2.1E-05 51.0 20.6 144 161-342 74-236 (292)
252 PF02259 FAT: FAT domain; Int 95.7 0.25 5.5E-06 56.7 16.2 132 156-299 142-305 (352)
253 KOG2610 Uncharacterized conser 95.6 0.69 1.5E-05 53.2 18.3 132 206-357 107-238 (491)
254 COG3118 Thioredoxin domain-con 95.6 0.53 1.2E-05 53.5 17.4 215 94-349 72-293 (304)
255 COG2976 Uncharacterized protei 95.6 0.45 9.8E-06 51.2 15.9 99 245-357 90-188 (207)
256 KOG0985 Vesicle coat protein c 95.6 5.3 0.00011 51.8 26.9 189 201-443 1103-1312(1666)
257 PF04910 Tcf25: Transcriptiona 95.6 0.77 1.7E-05 54.3 19.4 152 197-358 35-223 (360)
258 PF06552 TOM20_plant: Plant sp 95.5 0.074 1.6E-06 56.4 9.4 92 176-276 7-105 (186)
259 KOG0551 Hsp90 co-chaperone CNS 95.5 0.065 1.4E-06 61.2 9.6 106 241-358 78-183 (390)
260 COG2976 Uncharacterized protei 95.5 0.51 1.1E-05 50.8 15.6 102 201-316 88-189 (207)
261 PF11817 Foie-gras_1: Foie gra 95.3 3.4 7.4E-05 46.2 22.6 185 163-351 13-241 (247)
262 PF13176 TPR_7: Tetratricopept 95.3 0.037 8E-07 43.1 5.0 31 246-276 1-31 (36)
263 KOG2053 Mitochondrial inherita 95.2 2.1 4.4E-05 54.8 22.2 109 171-304 20-128 (932)
264 PF13176 TPR_7: Tetratricopept 95.2 0.041 9E-07 42.8 5.0 31 288-318 1-31 (36)
265 PF00515 TPR_1: Tetratricopept 95.2 0.038 8.3E-07 41.8 4.7 33 410-442 1-33 (34)
266 COG0790 FOG: TPR repeat, SEL1 95.1 0.72 1.6E-05 52.1 17.0 152 169-357 50-220 (292)
267 COG5159 RPN6 26S proteasome re 95.1 0.56 1.2E-05 52.9 15.2 220 207-443 8-239 (421)
268 PF00515 TPR_1: Tetratricopept 95.0 0.045 9.7E-07 41.5 4.7 30 202-231 1-30 (34)
269 PF07719 TPR_2: Tetratricopept 95.0 0.047 1E-06 41.0 4.7 33 410-442 1-33 (34)
270 COG3898 Uncharacterized membra 94.9 4 8.7E-05 48.1 21.8 229 171-442 165-395 (531)
271 PF05843 Suf: Suppressor of fo 94.8 0.22 4.8E-06 56.6 11.8 134 204-358 3-137 (280)
272 PF12739 TRAPPC-Trs85: ER-Golg 94.6 2.8 6E-05 50.5 20.8 186 245-447 209-407 (414)
273 PF13281 DUF4071: Domain of un 94.6 4 8.7E-05 48.4 21.4 174 163-357 144-334 (374)
274 PF07719 TPR_2: Tetratricopept 94.6 0.069 1.5E-06 40.1 4.7 31 202-232 1-31 (34)
275 KOG0376 Serine-threonine phosp 94.5 0.048 1E-06 65.0 5.5 98 160-273 4-101 (476)
276 PF00244 14-3-3: 14-3-3 protei 94.5 4.3 9.3E-05 45.3 20.5 186 162-363 3-204 (236)
277 PF08626 TRAPPC9-Trs120: Trans 94.4 2.6 5.6E-05 57.4 21.9 157 157-317 239-476 (1185)
278 PF06552 TOM20_plant: Plant sp 94.3 0.23 5E-06 52.8 9.5 104 260-372 7-119 (186)
279 PF13181 TPR_8: Tetratricopept 94.3 0.094 2E-06 39.6 4.8 31 411-441 2-32 (34)
280 KOG1550 Extracellular protein 94.2 1.2 2.7E-05 55.5 17.1 132 161-315 245-393 (552)
281 PF05843 Suf: Suppressor of fo 94.2 0.55 1.2E-05 53.4 13.0 131 165-316 6-137 (280)
282 PF13428 TPR_14: Tetratricopep 94.1 0.11 2.3E-06 42.2 5.2 42 203-252 2-43 (44)
283 KOG1538 Uncharacterized conser 94.1 2.9 6.2E-05 51.7 18.9 164 163-353 588-772 (1081)
284 PF13431 TPR_17: Tetratricopep 94.1 0.048 1E-06 42.2 2.9 34 224-265 1-34 (34)
285 PF13428 TPR_14: Tetratricopep 94.0 0.13 2.7E-06 41.8 5.4 42 161-210 2-43 (44)
286 PF13181 TPR_8: Tetratricopept 93.7 0.13 2.7E-06 38.9 4.6 31 202-232 1-31 (34)
287 PF13431 TPR_17: Tetratricopep 93.7 0.061 1.3E-06 41.6 2.9 33 182-222 1-33 (34)
288 KOG4014 Uncharacterized conser 93.6 0.95 2.1E-05 48.3 12.1 158 173-362 40-238 (248)
289 PF04910 Tcf25: Transcriptiona 93.4 2.5 5.3E-05 50.1 17.0 155 281-444 35-227 (360)
290 KOG4322 Anaphase-promoting com 93.4 7 0.00015 46.7 20.0 162 194-361 265-432 (482)
291 KOG4322 Anaphase-promoting com 93.2 3 6.6E-05 49.6 16.6 188 160-355 273-469 (482)
292 KOG1308 Hsp70-interacting prot 93.1 0.096 2.1E-06 60.2 4.5 96 162-273 116-211 (377)
293 KOG1463 26S proteasome regulat 93.1 4.7 0.0001 46.8 17.5 110 206-319 132-242 (411)
294 KOG4814 Uncharacterized conser 93.0 7.5 0.00016 48.3 19.9 106 160-275 354-459 (872)
295 KOG3783 Uncharacterized conser 92.9 7.4 0.00016 47.7 19.8 183 160-357 267-520 (546)
296 KOG2053 Mitochondrial inherita 92.9 15 0.00033 47.4 23.0 163 166-352 49-214 (932)
297 KOG0376 Serine-threonine phosp 92.8 0.14 3.1E-06 61.1 5.5 95 206-316 8-102 (476)
298 KOG2581 26S proteasome regulat 92.8 22 0.00048 42.4 22.7 142 169-316 135-277 (493)
299 PF12739 TRAPPC-Trs85: ER-Golg 92.8 5.9 0.00013 47.8 19.2 177 161-359 209-401 (414)
300 KOG1538 Uncharacterized conser 92.3 4.5 9.7E-05 50.1 16.9 51 294-355 781-831 (1081)
301 KOG2041 WD40 repeat protein [G 92.3 41 0.00088 42.6 27.6 28 159-186 795-822 (1189)
302 PF08424 NRDE-2: NRDE-2, neces 92.2 13 0.00029 43.2 20.6 153 197-357 14-183 (321)
303 KOG2581 26S proteasome regulat 91.9 5.7 0.00012 47.1 16.5 140 296-442 136-279 (493)
304 PF08626 TRAPPC9-Trs120: Trans 91.8 6.2 0.00013 53.8 19.7 227 200-441 240-554 (1185)
305 KOG4014 Uncharacterized conser 91.8 3.7 8.1E-05 44.0 13.7 141 150-320 58-238 (248)
306 KOG2561 Adaptor protein NUB1, 91.7 4.7 0.0001 48.0 15.7 117 201-319 162-300 (568)
307 PF09670 Cas_Cas02710: CRISPR- 91.6 5.2 0.00011 47.7 16.7 142 159-318 130-273 (379)
308 PF11817 Foie-gras_1: Foie gra 91.5 27 0.00059 39.1 21.4 153 205-359 13-209 (247)
309 KOG4814 Uncharacterized conser 91.3 14 0.0003 46.2 19.4 107 244-360 354-460 (872)
310 KOG1920 IkappaB kinase complex 91.3 2 4.3E-05 56.4 13.2 59 297-355 919-979 (1265)
311 PF04190 DUF410: Protein of un 91.2 31 0.00067 39.1 25.3 159 172-358 2-171 (260)
312 PF10579 Rapsyn_N: Rapsyn N-te 91.0 1.7 3.8E-05 40.3 9.1 72 159-235 5-76 (80)
313 KOG4563 Cell cycle-regulated h 91.0 1 2.2E-05 52.4 9.4 68 158-225 39-106 (400)
314 KOG0890 Protein kinase of the 91.0 5.3 0.00012 56.0 17.3 175 154-339 1664-1857(2382)
315 KOG1914 mRNA cleavage and poly 91.0 7.2 0.00016 47.7 16.6 175 160-357 286-464 (656)
316 PF11207 DUF2989: Protein of u 90.8 4.7 0.0001 43.9 13.7 142 178-350 59-200 (203)
317 KOG1308 Hsp70-interacting prot 90.7 0.13 2.7E-06 59.3 1.8 89 211-315 123-211 (377)
318 COG5290 IkappaB kinase complex 90.5 5.9 0.00013 50.1 15.6 27 515-541 1118-1144(1243)
319 COG3118 Thioredoxin domain-con 90.5 8.3 0.00018 44.2 15.8 134 206-366 138-271 (304)
320 KOG0985 Vesicle coat protein c 90.3 40 0.00087 44.3 22.6 168 157-357 1101-1308(1666)
321 PF08424 NRDE-2: NRDE-2, neces 89.8 19 0.00041 42.0 18.8 128 176-316 47-184 (321)
322 PF10579 Rapsyn_N: Rapsyn N-te 89.7 2.8 6E-05 39.0 9.2 70 289-363 9-78 (80)
323 PF04781 DUF627: Protein of un 89.6 2.2 4.7E-05 42.2 9.1 101 166-272 2-106 (111)
324 smart00101 14_3_3 14-3-3 homol 89.4 42 0.00092 37.8 24.8 189 162-363 3-206 (244)
325 KOG4521 Nuclear pore complex, 88.6 25 0.00054 46.7 19.4 197 204-444 922-1137(1480)
326 KOG0686 COP9 signalosome, subu 88.5 4.7 0.0001 47.8 12.2 105 242-354 148-255 (466)
327 PF04190 DUF410: Protein of un 88.4 50 0.0011 37.4 22.9 148 160-315 10-170 (260)
328 KOG2561 Adaptor protein NUB1, 88.3 7.2 0.00016 46.6 13.6 118 160-277 163-300 (568)
329 PF13174 TPR_6: Tetratricopept 88.1 0.7 1.5E-05 34.2 3.7 32 411-442 1-32 (33)
330 KOG3783 Uncharacterized conser 87.8 71 0.0015 39.6 21.8 83 181-273 250-332 (546)
331 KOG4507 Uncharacterized conser 87.7 0.64 1.4E-05 56.6 4.8 109 248-376 611-719 (886)
332 PF15015 NYD-SP12_N: Spermatog 87.0 6.5 0.00014 46.8 12.2 108 161-276 177-294 (569)
333 PF13174 TPR_6: Tetratricopept 86.5 1 2.2E-05 33.3 3.7 28 246-273 2-29 (33)
334 KOG0687 26S proteasome regulat 86.4 15 0.00032 42.8 14.3 129 177-316 81-211 (393)
335 COG5187 RPN7 26S proteasome re 85.9 19 0.00041 41.2 14.6 133 176-317 91-223 (412)
336 KOG1914 mRNA cleavage and poly 85.9 1E+02 0.0022 38.4 29.4 127 245-390 287-423 (656)
337 smart00028 TPR Tetratricopepti 85.6 1.1 2.5E-05 31.0 3.6 29 245-273 2-30 (34)
338 PF04781 DUF627: Protein of un 85.6 5.4 0.00012 39.5 9.2 100 208-313 2-105 (111)
339 PF10516 SHNi-TPR: SHNi-TPR; 85.5 1.7 3.6E-05 34.9 4.6 35 287-321 2-36 (38)
340 KOG3807 Predicted membrane pro 85.4 25 0.00054 40.9 15.4 107 156-272 180-303 (556)
341 PF10952 DUF2753: Protein of u 85.4 9.6 0.00021 38.5 10.7 74 205-278 4-84 (140)
342 PF10516 SHNi-TPR: SHNi-TPR; 85.2 1.7 3.6E-05 34.9 4.5 36 329-364 2-37 (38)
343 KOG0508 Ankyrin repeat protein 85.1 1.2 2.6E-05 53.2 5.1 137 201-340 244-391 (615)
344 KOG0508 Ankyrin repeat protein 85.0 5.8 0.00013 47.7 10.6 136 160-298 245-391 (615)
345 KOG1258 mRNA processing protei 84.7 1.2E+02 0.0026 38.1 23.5 172 160-357 297-470 (577)
346 KOG0686 COP9 signalosome, subu 84.3 5.1 0.00011 47.5 9.7 114 150-271 140-256 (466)
347 smart00028 TPR Tetratricopepti 84.3 1.3 2.9E-05 30.6 3.4 31 411-441 2-32 (34)
348 PF09613 HrpB1_HrpK: Bacterial 84.3 10 0.00022 39.9 11.1 92 154-261 4-95 (160)
349 COG5187 RPN7 26S proteasome re 83.9 48 0.0011 38.1 16.6 133 218-359 91-223 (412)
350 KOG2422 Uncharacterized conser 83.4 29 0.00062 43.1 15.6 176 257-442 251-451 (665)
351 KOG1924 RhoA GTPase effector D 83.1 5.5 0.00012 50.2 9.8 102 858-979 546-653 (1102)
352 KOG4507 Uncharacterized conser 82.8 8.5 0.00018 47.4 10.9 98 204-315 214-312 (886)
353 COG4649 Uncharacterized protei 82.2 29 0.00062 37.3 13.2 133 163-314 61-195 (221)
354 KOG0307 Vesicle coat complex C 81.9 10 0.00022 49.9 11.8 14 843-856 777-790 (1049)
355 PF11207 DUF2989: Protein of u 81.6 7.3 0.00016 42.4 9.0 79 218-308 122-200 (203)
356 KOG2114 Vacuolar assembly/sort 81.4 25 0.00054 45.3 14.6 49 183-232 350-398 (933)
357 PF09670 Cas_Cas02710: CRISPR- 81.0 47 0.001 39.8 16.5 138 205-360 134-273 (379)
358 PF14853 Fis1_TPR_C: Fis1 C-te 80.8 7.5 0.00016 33.5 7.1 43 329-376 2-44 (53)
359 PRK13184 pknD serine/threonine 80.7 9.6 0.00021 50.4 11.4 105 219-330 485-591 (932)
360 KOG1924 RhoA GTPase effector D 80.4 5.3 0.00011 50.4 8.3 6 582-587 438-443 (1102)
361 PF15015 NYD-SP12_N: Spermatog 80.2 22 0.00048 42.5 12.8 103 207-317 181-293 (569)
362 KOG0890 Protein kinase of the 80.2 91 0.002 44.8 20.2 111 198-318 1666-1787(2382)
363 KOG2908 26S proteasome regulat 80.1 1.1E+02 0.0023 36.2 17.9 95 253-350 84-179 (380)
364 PF10255 Paf67: RNA polymerase 79.9 13 0.00028 44.7 11.2 72 205-277 125-197 (404)
365 COG4649 Uncharacterized protei 79.7 55 0.0012 35.3 14.3 148 167-356 46-195 (221)
366 PF04053 Coatomer_WDAD: Coatom 79.5 53 0.0012 40.2 16.5 49 168-224 269-317 (443)
367 KOG2422 Uncharacterized conser 79.3 96 0.0021 38.8 18.1 175 173-358 251-449 (665)
368 KOG3024 Uncharacterized conser 79.1 1.2E+02 0.0025 35.1 17.5 135 171-311 17-152 (312)
369 KOG1920 IkappaB kinase complex 77.1 1.6E+02 0.0036 39.7 20.3 100 255-355 919-1026(1265)
370 KOG1497 COP9 signalosome, subu 77.1 53 0.0012 38.3 14.3 111 199-313 100-211 (399)
371 PF10952 DUF2753: Protein of u 76.4 23 0.0005 35.9 9.8 73 247-319 4-83 (140)
372 PF10373 EST1_DNA_bind: Est1 D 76.3 37 0.00081 37.7 13.2 62 179-256 1-62 (278)
373 PF05053 Menin: Menin; InterP 75.9 37 0.0008 42.2 13.4 96 218-318 253-350 (618)
374 PF14853 Fis1_TPR_C: Fis1 C-te 75.9 5 0.00011 34.5 4.6 34 411-444 2-35 (53)
375 PF04097 Nic96: Nup93/Nic96; 75.8 2.4E+02 0.0052 36.1 21.4 19 167-185 265-283 (613)
376 KOG2114 Vacuolar assembly/sort 75.3 33 0.0007 44.3 13.1 49 224-273 349-397 (933)
377 smart00101 14_3_3 14-3-3 homol 75.1 70 0.0015 36.1 14.6 57 260-316 144-201 (244)
378 PRK10941 hypothetical protein; 75.0 22 0.00048 40.5 10.9 78 244-334 181-258 (269)
379 PF10373 EST1_DNA_bind: Est1 D 74.9 22 0.00047 39.6 10.8 62 221-298 1-62 (278)
380 PF05053 Menin: Menin; InterP 74.9 33 0.00072 42.6 12.7 72 201-275 276-349 (618)
381 cd09239 BRO1_HD-PTP_like Prote 74.8 58 0.0013 38.7 14.8 33 327-359 251-283 (361)
382 KOG4521 Nuclear pore complex, 74.4 1.1E+02 0.0025 41.0 17.6 132 154-303 914-1071(1480)
383 COG3014 Uncharacterized protei 74.2 90 0.0019 36.8 15.2 70 206-275 62-156 (449)
384 PF09613 HrpB1_HrpK: Bacterial 73.8 22 0.00047 37.6 9.5 88 242-345 8-95 (160)
385 cd09247 BRO1_Alix_like_2 Prote 73.7 1.6E+02 0.0034 34.8 17.9 36 327-362 252-287 (346)
386 KOG3824 Huntingtin interacting 73.1 7.8 0.00017 44.5 6.5 66 158-231 114-179 (472)
387 KOG1497 COP9 signalosome, subu 72.2 1.7E+02 0.0037 34.3 16.7 109 242-353 101-209 (399)
388 TIGR02561 HrpB1_HrpK type III 72.1 31 0.00066 36.1 10.0 92 154-261 4-95 (153)
389 PRK13184 pknD serine/threonine 72.0 18 0.00039 47.9 10.4 109 168-288 483-591 (932)
390 COG3947 Response regulator con 71.5 49 0.0011 38.2 12.1 74 161-242 280-353 (361)
391 cd09034 BRO1_Alix_like Protein 71.3 55 0.0012 38.3 13.5 34 327-360 250-283 (345)
392 PF10255 Paf67: RNA polymerase 71.3 13 0.00028 44.7 8.2 74 246-319 124-197 (404)
393 PF14561 TPR_20: Tetratricopep 71.2 24 0.00053 33.5 8.5 34 198-231 18-51 (90)
394 PRK10941 hypothetical protein; 71.1 37 0.0008 38.8 11.5 80 201-293 180-259 (269)
395 PF10858 DUF2659: Protein of u 70.9 1.3E+02 0.0027 32.3 14.0 102 208-315 99-200 (220)
396 TIGR02710 CRISPR-associated pr 70.8 77 0.0017 38.0 14.3 65 159-226 129-195 (380)
397 PF12309 KBP_C: KIF-1 binding 70.7 1E+02 0.0022 37.0 15.4 101 216-316 189-332 (371)
398 PF14561 TPR_20: Tetratricopep 70.6 36 0.00079 32.3 9.6 72 240-338 18-89 (90)
399 KOG1310 WD40 repeat protein [G 69.8 16 0.00036 44.7 8.5 96 159-270 373-471 (758)
400 COG3629 DnrI DNA-binding trans 69.4 99 0.0021 35.7 14.3 75 200-282 151-225 (280)
401 cd09241 BRO1_ScRim20-like Prot 68.9 98 0.0021 36.7 14.9 36 326-361 235-270 (355)
402 PF07145 PAM2: Ataxin-2 C-term 68.4 3.1 6.7E-05 28.1 1.3 13 957-969 5-17 (18)
403 COG3629 DnrI DNA-binding trans 67.1 70 0.0015 36.8 12.5 90 218-325 137-226 (280)
404 PF00244 14-3-3: 14-3-3 protei 66.9 2.2E+02 0.0047 31.9 23.7 59 176-234 142-201 (236)
405 PF04053 Coatomer_WDAD: Coatom 66.6 88 0.0019 38.3 14.1 112 165-308 300-411 (443)
406 KOG3824 Huntingtin interacting 66.2 12 0.00026 43.1 6.1 58 208-273 122-179 (472)
407 PF07721 TPR_4: Tetratricopept 66.2 6.4 0.00014 28.5 2.7 24 203-226 2-25 (26)
408 KOG3364 Membrane protein invol 66.2 47 0.001 34.3 9.7 80 285-375 31-113 (149)
409 KOG0128 RNA-binding protein SA 66.2 3.5E+02 0.0076 35.5 19.1 189 162-364 115-307 (881)
410 KOG0687 26S proteasome regulat 65.7 2.8E+02 0.0061 32.8 19.7 111 156-275 100-212 (393)
411 KOG1258 mRNA processing protei 65.6 3.7E+02 0.008 34.0 20.8 128 199-349 294-421 (577)
412 cd09240 BRO1_Alix Protein-inte 64.9 88 0.0019 37.0 13.4 34 327-360 254-287 (346)
413 cd09034 BRO1_Alix_like Protein 64.8 80 0.0017 36.9 13.0 18 217-234 136-153 (345)
414 PF14858 DUF4486: Domain of un 64.7 2.6E+02 0.0055 35.1 17.3 72 289-360 154-229 (542)
415 KOG2034 Vacuolar sorting prote 64.1 1.5E+02 0.0033 38.9 15.6 59 207-276 363-421 (911)
416 PF07721 TPR_4: Tetratricopept 64.0 7.7 0.00017 28.0 2.8 25 245-269 2-26 (26)
417 COG3014 Uncharacterized protei 62.9 3.2E+02 0.007 32.5 18.5 27 248-274 62-88 (449)
418 KOG2460 Signal recognition par 61.8 4.1E+02 0.0088 33.3 25.4 33 412-444 424-456 (593)
419 KOG3807 Predicted membrane pro 61.3 1.6E+02 0.0035 34.6 13.8 124 207-346 189-329 (556)
420 PF07079 DUF1347: Protein of u 59.9 4.2E+02 0.009 32.8 26.3 257 8-323 272-546 (549)
421 KOG4672 Uncharacterized conser 59.8 66 0.0014 38.4 10.6 19 957-975 425-446 (487)
422 COG3947 Response regulator con 59.3 63 0.0014 37.4 10.1 72 245-324 280-351 (361)
423 cd09243 BRO1_Brox_like Protein 59.3 1.5E+02 0.0032 35.3 13.8 34 326-359 246-279 (353)
424 KOG4563 Cell cycle-regulated h 59.2 23 0.0005 41.7 6.9 65 286-350 41-105 (400)
425 KOG3364 Membrane protein invol 58.4 41 0.00088 34.8 7.6 69 201-273 31-100 (149)
426 KOG0994 Extracellular matrix g 58.0 6.5E+02 0.014 34.4 19.8 23 294-316 1533-1555(1758)
427 TIGR02710 CRISPR-associated pr 56.8 1.8E+02 0.004 35.0 13.9 108 208-318 136-278 (380)
428 PF10858 DUF2659: Protein of u 56.2 1.3E+02 0.0029 32.1 11.1 103 164-272 97-199 (220)
429 KOG2236 Uncharacterized conser 55.8 29 0.00064 41.9 7.1 87 856-952 390-479 (483)
430 COG3914 Spy Predicted O-linked 55.4 1.9E+02 0.004 36.5 13.9 109 194-316 60-172 (620)
431 cd09246 BRO1_Alix_like_1 Prote 55.3 4.2E+02 0.0092 31.4 19.0 34 326-359 245-278 (353)
432 KOG1310 WD40 repeat protein [G 54.8 43 0.00092 41.3 8.3 82 215-312 387-471 (758)
433 KOG3024 Uncharacterized conser 54.6 1.9E+02 0.0041 33.5 12.8 61 291-352 90-151 (312)
434 KOG0119 Splicing factor 1/bran 53.9 1.1E+02 0.0024 37.5 11.4 36 842-879 344-381 (554)
435 KOG0905 Phosphoinositide 3-kin 53.8 61 0.0013 43.4 9.8 45 850-900 88-133 (1639)
436 TIGR02561 HrpB1_HrpK type III 53.5 66 0.0014 33.7 8.4 87 243-345 9-95 (153)
437 KOG2375 Protein interacting wi 53.3 77 0.0017 40.9 10.6 99 845-972 544-650 (756)
438 COG4976 Predicted methyltransf 53.0 20 0.00044 39.9 4.9 56 168-231 3-58 (287)
439 PF08311 Mad3_BUB1_I: Mad3/BUB 52.7 1.2E+02 0.0026 30.6 10.1 86 258-355 40-126 (126)
440 cd09241 BRO1_ScRim20-like Prot 52.5 3.2E+02 0.007 32.4 15.3 37 156-192 102-147 (355)
441 KOG0276 Vesicle coat complex C 51.7 82 0.0018 39.6 10.0 71 246-316 616-696 (794)
442 KOG0119 Splicing factor 1/bran 51.4 1E+02 0.0022 37.9 10.5 23 847-869 386-411 (554)
443 cd02681 MIT_calpain7_1 MIT: do 50.8 87 0.0019 29.1 8.0 34 159-192 5-38 (76)
444 cd09243 BRO1_Brox_like Protein 50.4 4.8E+02 0.01 31.2 16.1 19 50-68 50-68 (353)
445 KOG0307 Vesicle coat complex C 50.4 91 0.002 41.5 10.8 17 409-425 586-602 (1049)
446 cd02680 MIT_calpain7_2 MIT: do 50.4 1.3E+02 0.0029 27.9 9.0 49 340-391 18-67 (75)
447 KOG2034 Vacuolar sorting prote 50.2 2.4E+02 0.0053 37.1 14.2 61 163-234 361-421 (911)
448 cd09240 BRO1_Alix Protein-inte 49.8 4.3E+02 0.0093 31.3 15.7 37 156-192 115-160 (346)
449 KOG0132 RNA polymerase II C-te 49.5 89 0.0019 40.2 10.1 16 926-941 653-668 (894)
450 PF04625 DEC-1_N: DEC-1 protei 49.3 59 0.0013 37.6 7.8 22 859-881 68-89 (407)
451 cd02683 MIT_1 MIT: domain cont 49.0 91 0.002 28.9 7.9 37 158-194 4-40 (77)
452 cd09247 BRO1_Alix_like_2 Prote 48.5 3.2E+02 0.0069 32.3 14.4 34 285-318 252-285 (346)
453 KOG0546 HSP90 co-chaperone CPR 48.1 32 0.0007 40.5 5.8 117 247-376 225-352 (372)
454 COG4976 Predicted methyltransf 47.7 19 0.00042 40.1 3.7 57 293-357 2-58 (287)
455 cd02678 MIT_VPS4 MIT: domain c 47.3 99 0.0022 28.2 7.8 36 159-194 5-40 (75)
456 TIGR03504 FimV_Cterm FimV C-te 47.2 38 0.00083 28.1 4.5 25 164-188 3-27 (44)
457 COG1747 Uncharacterized N-term 46.9 6.9E+02 0.015 31.4 21.0 81 175-274 81-161 (711)
458 KOG2908 26S proteasome regulat 46.8 5.7E+02 0.012 30.5 21.4 98 211-314 84-182 (380)
459 KOG2460 Signal recognition par 46.7 4.6E+02 0.01 32.8 15.1 32 331-362 425-456 (593)
460 KOG0889 Histone acetyltransfer 46.4 1.5E+03 0.032 35.1 23.0 37 408-444 2810-2846(3550)
461 PF04212 MIT: MIT (microtubule 46.4 77 0.0017 28.2 6.8 35 159-193 4-38 (69)
462 PF12309 KBP_C: KIF-1 binding 46.2 6E+02 0.013 30.5 23.5 178 258-444 138-343 (371)
463 KOG2063 Vacuolar assembly/sort 45.8 3.7E+02 0.008 35.9 15.2 29 160-188 504-532 (877)
464 PF04212 MIT: MIT (microtubule 45.4 1.3E+02 0.0029 26.7 8.2 33 331-363 8-40 (69)
465 KOG4672 Uncharacterized conser 45.2 1.6E+02 0.0034 35.4 10.6 10 431-440 88-97 (487)
466 cd09242 BRO1_ScBro1_like Prote 45.1 5.2E+02 0.011 30.6 15.4 34 327-360 243-276 (348)
467 KOG1953 Targeting complex (TRA 44.2 3.1E+02 0.0068 36.6 13.8 155 284-444 437-596 (1235)
468 cd02682 MIT_AAA_Arch MIT: doma 44.2 1.1E+02 0.0024 28.4 7.5 37 158-194 4-40 (75)
469 cd09242 BRO1_ScBro1_like Prote 44.1 6.1E+02 0.013 30.0 15.8 40 153-192 100-148 (348)
470 PF03097 BRO1: BRO1-like domai 44.0 72 0.0016 37.7 8.2 36 327-362 238-273 (377)
471 smart00745 MIT Microtubule Int 43.5 2.2E+02 0.0049 25.7 9.6 29 250-278 14-42 (77)
472 KOG4279 Serine/threonine prote 43.0 95 0.0021 39.8 8.9 106 198-316 197-317 (1226)
473 cd02682 MIT_AAA_Arch MIT: doma 43.0 1.9E+02 0.0041 26.9 8.8 36 328-363 6-41 (75)
474 KOG2070 Guanine nucleotide exc 42.2 68 0.0015 39.1 7.3 72 903-1003 420-496 (661)
475 PHA02537 M terminase endonucle 42.2 1.6E+02 0.0035 33.0 9.9 106 211-318 92-210 (230)
476 cd02679 MIT_spastin MIT: domai 41.6 88 0.0019 29.3 6.6 36 244-279 8-43 (79)
477 PF03635 Vps35: Vacuolar prote 41.4 3.4E+02 0.0074 35.7 14.1 115 203-320 593-719 (762)
478 PF08311 Mad3_BUB1_I: Mad3/BUB 40.8 1.5E+02 0.0032 29.9 8.7 86 174-271 40-126 (126)
479 cd02681 MIT_calpain7_1 MIT: do 40.7 2.8E+02 0.006 25.8 9.6 29 332-360 10-38 (76)
480 cd02656 MIT MIT: domain contai 40.2 1.6E+02 0.0034 26.7 8.0 36 159-194 5-40 (75)
481 cd02679 MIT_spastin MIT: domai 39.7 1E+02 0.0022 28.9 6.6 36 286-321 8-43 (79)
482 cd09244 BRO1_Rhophilin Protein 39.6 7.3E+02 0.016 29.6 19.5 37 155-191 101-146 (350)
483 cd02684 MIT_2 MIT: domain cont 39.4 1.7E+02 0.0036 27.0 8.0 36 159-194 5-40 (75)
484 TIGR03504 FimV_Cterm FimV C-te 39.2 45 0.00097 27.7 3.8 25 290-314 3-27 (44)
485 PRK15180 Vi polysaccharide bio 38.9 1.4E+02 0.0031 36.6 9.2 125 168-316 297-421 (831)
486 cd02677 MIT_SNX15 MIT: domain 38.8 3E+02 0.0065 25.4 9.5 51 256-318 18-69 (75)
487 KOG2063 Vacuolar assembly/sort 38.6 2.9E+02 0.0063 36.7 12.7 109 204-316 506-621 (877)
488 PF12881 NUT_N: NUT protein N 37.8 48 0.001 38.3 5.0 114 884-1008 6-123 (328)
489 COG2178 Predicted RNA-binding 37.5 6E+02 0.013 28.0 15.0 105 205-318 32-153 (204)
490 KOG0546 HSP90 co-chaperone CPR 37.4 46 0.00099 39.3 4.9 103 205-316 225-339 (372)
491 COG5290 IkappaB kinase complex 37.1 1.1E+03 0.025 31.1 20.9 25 290-314 939-963 (1243)
492 cd09244 BRO1_Rhophilin Protein 36.5 2.7E+02 0.0058 33.2 11.1 17 260-276 131-147 (350)
493 KOG4279 Serine/threonine prote 36.1 51 0.0011 42.1 5.2 184 242-444 199-400 (1226)
494 cd02683 MIT_1 MIT: domain cont 35.9 3.4E+02 0.0073 25.2 9.4 39 333-371 11-50 (77)
495 PRK14707 hypothetical protein; 35.9 5.4E+02 0.012 37.5 14.6 187 169-361 840-1032(2710)
496 PHA02537 M terminase endonucle 35.5 2.2E+02 0.0047 32.0 9.6 106 250-357 89-207 (230)
497 smart00745 MIT Microtubule Int 35.3 2E+02 0.0044 25.9 8.0 36 159-194 7-42 (77)
498 TIGR03362 VI_chp_7 type VI sec 34.3 8.1E+02 0.018 28.6 18.7 144 162-319 101-283 (301)
499 PF10938 YfdX: YfdX protein; 34.0 73 0.0016 33.4 5.4 110 163-272 5-145 (155)
500 PRK14707 hypothetical protein; 33.7 2.9E+02 0.0063 39.9 11.8 162 206-367 1045-1206(2710)
No 1
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.97 E-value=9.8e-31 Score=324.77 Aligned_cols=389 Identities=29% Similarity=0.437 Sum_probs=353.8
Q ss_pred CCccCcchhhhHHHHHHhh-------chhHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCcCCcc
Q 001110 1 MHTRGLQMRSLGHVVKLSE-------KLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDG 73 (1155)
Q Consensus 1 mH~rGINmRYLG~V~~l~~-------kl~hl~~L~~~EMIaRsaKhIlR~~l~~l~~~~~la~aIshfLNcLLG~~~~~~ 73 (1155)
||..|||+||||+++.++. .+.++.+|++.|+++|++||+++.+++.+. ..++..+++|||||+|+..++..
T Consensus 727 L~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~ei~~RslKhvlK~~~r~l~-~~~i~ta~SH~ln~~ls~~~~av 805 (1236)
T KOG1839|consen 727 LHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVGEIALRSLKHVLKDNLRLLG-ADHIQTAASHALNCLLSVMEAAV 805 (1236)
T ss_pred HHHhhHHHHHhhccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhhcccccC
Confidence 7999999999999999763 367889999999999999999999999854 78999999999999999854411
Q ss_pred Cc----------C---------------------CCCccHHHHHHHHHHHHHhhchhhcccccc------ccchHHHHHH
Q 001110 74 LN----------K---------------------SHNVHPLVWRWLELFLMKRYEWDLNGLNFK------DVRKFAILRG 116 (1155)
Q Consensus 74 ~~----------~---------------------s~~~~~llwk~I~~~lk~rf~y~l~~~~~~------~l~kl~LLre 116 (1155)
.. + ..-....+|++|+...+.+|++.+...... ...++...+.
T Consensus 806 ~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 885 (1236)
T KOG1839|consen 806 QKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKL 885 (1236)
T ss_pred CCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHH
Confidence 00 0 011234699999999998898887754332 3457788899
Q ss_pred HHHHHhHHHhhcccCCCCC---CCchHHhHHhhchhhhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 117 LCHKVGIELVSRDFDMDSP---SPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 193 (1155)
Q Consensus 117 L~~k~GiqL~ardY~fd~a---~~f~~eDI~~L~pi~K~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i 193 (1155)
.|.+.|++..++.|+++.. ..|...||.++.|++++.......+...++.|+.....|.+.+|.+ .-+++.++..+
T Consensus 886 ~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v 964 (1236)
T KOG1839|consen 886 EKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV 964 (1236)
T ss_pred HHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh
Confidence 9999999999999999884 7899999999999999999999999999999999999999999999 99999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 194 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 194 ~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
+|..|+..+.+|..|+.++..+|++++|+.+.++|.-+.++.+|.|++.+...|.+|+...+..++...|+..+.+++++
T Consensus 965 ~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 965 MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred hhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 001110 274 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 353 (1155)
Q Consensus 274 ~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkk 353 (1155)
+...+|++||..+.+..+++.++...++++.|+++++.|+++.++++|+.+..++.++..+|+++..++++..|+.+.+.
T Consensus 1045 ~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1045 KLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001110 354 TLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 391 (1155)
Q Consensus 354 ALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~ 391 (1155)
++.+++..+|++|.++.++..|+..........++++.
T Consensus 1125 t~~iy~~qlg~~hsrt~~S~~~~~~~T~~~v~~Qk~~~ 1162 (1236)
T KOG1839|consen 1125 TYGIYKEQLGPDHSRTKESSEWLNLSTAIAVKIQKKLL 1162 (1236)
T ss_pred HHHHHHHhhCCCcccchhhHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999877776666655443
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.95 E-value=3e-25 Score=263.33 Aligned_cols=295 Identities=24% Similarity=0.287 Sum_probs=266.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
.+.....+..++..|..+|+|+.|+.+|++|+++..+..|..|+..+..+..+|.+|..+++|.+|+.+|++|+.+.+..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 44456667779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 236 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
+|.+|+..+.++.+||.+|...|+|++|..++++|+.|.++..+..++.++..+.+++.++..++++++|..+|++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HHHhHHHHHHHHhc
Q 001110 316 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQEAARNG 393 (1155)
Q Consensus 316 ~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l--~qk~~e~AeAi~~~ 393 (1155)
+...+|.+++.++..+.+||.+|..+|+|.+|.++|++|+.+.++..|..+..+...+..|+.. ..+.+..+..++..
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999898888888877643 44444444444444
Q ss_pred CCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhcCCCCCCC
Q 001110 394 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTS 451 (1155)
Q Consensus 394 ~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~~e~~t~~ 451 (1155)
..... .....+++++...|.+|+.+|..+|+|++|+++.++++.......+..+...
T Consensus 435 ~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~ 491 (508)
T KOG1840|consen 435 AKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTV 491 (508)
T ss_pred HHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 43343 4567788899999999999999999999999999999999888776555443
No 3
>PF12807 eIF3_p135: Translation initiation factor eIF3 subunit 135
Probab=99.93 E-value=1.1e-26 Score=242.00 Aligned_cols=132 Identities=33% Similarity=0.626 Sum_probs=117.1
Q ss_pred CCccCcchhhhHHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCcCCccCc----
Q 001110 1 MHTRGLQMRSLGHVVKLS-EKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLN---- 75 (1155)
Q Consensus 1 mH~rGINmRYLG~V~~l~-~kl~hl~~L~~~EMIaRsaKhIlR~~l~~l~~~~~la~aIshfLNcLLG~~~~~~~~---- 75 (1155)
||++||||||||+|+.++ +++++++.||++|||||++|||+|.+++.+. ...+..+|+||||||||...+....
T Consensus 17 lH~~GIN~RyLG~v~~~~~~~~~~l~~l~~~EmiaR~~K~i~r~~l~~~~-~~~~~~~v~~~lN~llg~~~~~~~~~~~~ 95 (169)
T PF12807_consen 17 LHRRGINMRYLGKVAKLIKSSLPHLRRLCLQEMIARAAKHILREYLRSVP-QSELSSAVSHFLNCLLGSSSNSKPKKEKK 95 (169)
T ss_pred HHHcCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHhhCCCcccccccccc
Confidence 899999999999999987 5689999999999999999999999999954 6899999999999999987654211
Q ss_pred -------------CCCCccHHHHHHHHHHHHHhhchhhcccccc---ccchHHHHHHHHHHHhHHHhhcccCCC
Q 001110 76 -------------KSHNVHPLVWRWLELFLMKRYEWDLNGLNFK---DVRKFAILRGLCHKVGIELVSRDFDMD 133 (1155)
Q Consensus 76 -------------~s~~~~~llwk~I~~~lk~rf~y~l~~~~~~---~l~kl~LLreL~~k~GiqL~ardY~fd 133 (1155)
+..-....+|.+|+++++.+|+|++..++++ .++++++||++|.++|+|+.+++|.|+
T Consensus 96 ~~~~~~~~~~~~~~~~lt~~~l~~~I~~ev~~rf~y~l~~~~~~~~~~~~~~~LLR~ic~k~GiQl~~r~Y~f~ 169 (169)
T PF12807_consen 96 EKNSNSKSKSDSSWSKLTPSSLWSEIEKEVKSRFRYELPEDWFDEKYGLQKIQLLREICQKTGIQLLARDYDFT 169 (169)
T ss_pred chhccccccccchhhhcCcHHHHHHHHHHHHHhcCCcCchHHhhhhccccHHHHHHHHHHHhCeEeeeecCCCC
Confidence 0112245799999999999999999999988 899999999999999999999999885
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.88 E-value=6e-21 Score=226.89 Aligned_cols=254 Identities=24% Similarity=0.268 Sum_probs=226.7
Q ss_pred CCCCCCCchHHhHHhhchhhhhhcC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 001110 131 DMDSPSPFRKIDVVSLVPVHKQAAC-SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLA 209 (1155)
Q Consensus 131 ~fd~a~~f~~eDI~~L~pi~K~~~~-~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG 209 (1155)
.|+.+.......+..+ .+.... ....+..+..+|.+|..+++|.+|+.+|++|+.+.+.++|.+|+..+.++.+||
T Consensus 214 ~~e~A~~l~k~Al~~l---~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRIL---EKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred cHHHHHHHHHHHHHHH---HHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455555555555332 122222 233344555699999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 001110 210 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 289 (1155)
Q Consensus 210 ~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~ 289 (1155)
.+|...|+|++|..++++|+.|+++.+|..++.+...+.+++.++..++++++|+.+|++++.++...+|.+|+.++.++
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHH
Q 001110 290 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 369 (1155)
Q Consensus 290 ~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t 369 (1155)
.+||.+|+.+|+|++|.++|++|+.+.++..|..+..+...+.+||..|.+++++.+|.+.|.++..|. +..|++|+.+
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~ 449 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCch
Confidence 999999999999999999999999999999999899999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 001110 370 QDAAAWLEYFESKAFEQQE 388 (1155)
Q Consensus 370 ~~al~~La~l~qk~~e~Ae 388 (1155)
...+.+|+.++...+....
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~ 468 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEA 468 (508)
T ss_pred HHHHHHHHHHHHHcccHHH
Confidence 9999999877665444433
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-21 Score=226.74 Aligned_cols=249 Identities=18% Similarity=0.133 Sum_probs=199.3
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001110 150 HKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 229 (1155)
Q Consensus 150 ~K~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKAL 229 (1155)
.+.+........+++++|.+|...+.|++|+..|.+|+.+ .|..+.++.+||.+|+.+|+.+-|+..|++||
T Consensus 242 ~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 242 EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 3455566666778888888888888888888888888876 57778888888888888888888888888888
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHH
Q 001110 230 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 309 (1155)
Q Consensus 230 ei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~l 309 (1155)
++ .|....+|+|||..+...|+..+|..+|.+||.+ .|..+++++|||.+|.++|++++|..+|
T Consensus 314 ~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 314 EL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred hc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHHH
Confidence 86 5777888999999999999999999999999886 3455778899999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHH
Q 001110 310 HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA 389 (1155)
Q Consensus 310 ekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeA 389 (1155)
++|++.. +..+.++.|||.+|.++|++++|+.+|++|+.| .|...+++.+++......++...+
T Consensus 378 ~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 378 LKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHH
Confidence 9999876 567888899999999999999999999999877 456677777777555555544444
Q ss_pred HHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 390 ARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 390 i~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
+.....++ ...+..++.+.+||.+|...|+..+|+..|+.+|++.+..-
T Consensus 442 ~q~y~rAI------~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 442 IQCYTRAI------QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHH------hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 43322221 22356888899999999999999999999999999887754
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=3.2e-21 Score=223.08 Aligned_cols=242 Identities=19% Similarity=0.151 Sum_probs=211.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
...+-++-++|-.+..+|+...|+.+|++|+.+ +|....+|.+||.+|..++.|+.|+.+|++|+.+
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----- 281 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----- 281 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-----
Confidence 344556777888999999999999999999987 7889999999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.|..+.++.|||.+|+.+|..+.|+..|++||++ .|....+|+|||.++...|+..+|..+|.+||.+.
T Consensus 282 ---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 282 ---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred ---CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 5778899999999999999999999999999986 57778899999999999999999999999999986
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC
Q 001110 317 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 396 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~ 396 (1155)
+..+.+++|||.+|..+|.+++|..+|++|++++ +....+..+|+.+.++++...+++..+...
T Consensus 351 --------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 351 --------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred --------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 4567889999999999999999999999999874 455666778888888777777776654433
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 397 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 397 ~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
+. -.+..++.|.++|..|..+|+...|+..|.+|+++.+..-
T Consensus 415 lr------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 415 LR------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred Hh------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 32 2357889999999999999999999999999999987754
No 7
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.77 E-value=5.5e-20 Score=229.78 Aligned_cols=461 Identities=46% Similarity=0.635 Sum_probs=325.2
Q ss_pred CCccCcchhhhH--HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCcCCccCcCCC
Q 001110 1 MHTRGLQMRSLG--HVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLNKSH 78 (1155)
Q Consensus 1 mH~rGINmRYLG--~V~~l~~kl~hl~~L~~~EMIaRsaKhIlR~~l~~l~~~~~la~aIshfLNcLLG~~~~~~~~~s~ 78 (1155)
||.++..|+||| ++.++.+++||.+.+|..|||.+.++|.+...+..+ +....
T Consensus 546 ~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~---e~~~~---------------------- 600 (1236)
T KOG1839|consen 546 MHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFIVAV---ENAAE---------------------- 600 (1236)
T ss_pred HhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHHHHH---hcchh----------------------
Confidence 799999999999 999999999999999999999999999998877762 11111
Q ss_pred CccHHHHHHHHHHHHHhhchhhccccccccchHHHHHHHHHHHhHHHhhcccCCCCCCCchHHhHHhhchhhhhhcCChH
Q 001110 79 NVHPLVWRWLELFLMKRYEWDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSA 158 (1155)
Q Consensus 79 ~~~~llwk~I~~~lk~rf~y~l~~~~~~~l~kl~LLreL~~k~GiqL~ardY~fd~a~~f~~eDI~~L~pi~K~~~~~s~ 158 (1155)
+|.++...+|...|+..+.++.+...+...
T Consensus 601 --------------------------------------------------~~~~ds~~~~~~~d~~~~~~v~~l~~~is~ 630 (1236)
T KOG1839|consen 601 --------------------------------------------------DYGFDSSNPFKKSDAIGLVPVHKLVNCISA 630 (1236)
T ss_pred --------------------------------------------------hccCCccccccccchhhHHHHHHHHHhhcc
Confidence 666777777777777777777777766666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
+.+ +. ..-..++|.+++..++......++..+....-++.+ +.++...+++.+|..+-++++++.++.+|.
T Consensus 631 d~~---eS-----~~~~~~dav~~~~~al~k~~~~~~~~~fnp~~f~s~-~v~~~~t~~~~~a~~~~qk~~d~~Erll~~ 701 (1236)
T KOG1839|consen 631 DGR---ES-----SKLSLDDAVKYATKALVKLVAVCGPYGFNPAGFYSL-AVVLYHTEDFNQAAIQQQKVLDINERLLGL 701 (1236)
T ss_pred ccc---cc-----cccchHHHHHHHHHHHHHHHhhhcccccCccccccC-ceEecCccccchhhhhhHhHHHHHHHHhcc
Confidence 555 11 122345888888888887777777766554444444 899999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
++|+++..|..++.++++...+++|+.+-.+++.++...++..|+..+..|.+.+.+-...+ +-++++++.+++.+.+
T Consensus 702 ~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r 779 (1236)
T KOG1839|consen 702 DIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLR 779 (1236)
T ss_pred ccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988888888777766 8899999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCc
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 398 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~ 398 (1155)
.++.+|...+.+ +.|..++.-++. |....+..+++++.. +..+ +.+ ......++
T Consensus 780 ~l~~~~i~ta~S-H~ln~~ls~~~~---av~~~~t~~~~~ka~----~~~~-----------------~~~-~~g~~k~~ 833 (1236)
T KOG1839|consen 780 LLGADHIQTAAS-HALNCLLSVMEA---AVQKEQTTLEILKAK----DLRT-----------------QDA-AAGTPKPD 833 (1236)
T ss_pred hcchhHHHHHHH-HHHHHHhhcccc---cCCCccchHHHHhhh----hhhh-----------------hhh-ccCCCCcc
Confidence 999999988888 666666654433 444444444443322 0000 000 01445556
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhcCCCCCCCCCCcchhHhhhcccccccCCCCCCCcc
Q 001110 399 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESSDEETHAPEPESDTD 478 (1155)
Q Consensus 399 ~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~~e~~t~~~~Ia~~E~~~E~~ekek~I~el~~~~~ 478 (1155)
..+....+....+++.+|..-....+.+....+.+.++........ ++.......+.+..+.+.+-..+..
T Consensus 834 ~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~i~~~~r~~~~e~~ 904 (1236)
T KOG1839|consen 834 ASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSK---------IAVEKLEKKKRELQKPARNYDFESS 904 (1236)
T ss_pred cccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccch---------hHHHHHHHHhhhcchhhhhcccccc
Confidence 6667778888889998887665556666666667766665443322 2222222222322222222111111
Q ss_pred cccCCCCCcchhhhHHHhhhccCCCc----cccc-cccccccCCCCCccc-cccccCCCcccccccccccccchhhhhcc
Q 001110 479 VNQGSSIPFQQQELVVEESAVEKPNI----TEEI-SSAIHEEGDDGWQPV-QRLRSAGSYGRRLKQRRATIGKVHSYQKR 552 (1155)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~r~~~l~k~~~~~~~ 552 (1155)
..+..... ..-.-.-..++-... +.+. ..-++.-.++||+|+ .++++.+..+...+.++|.+++-|.++.+
T Consensus 905 -~~ks~f~~--~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~ 981 (1236)
T KOG1839|consen 905 -EPKSEFND--SDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAK 981 (1236)
T ss_pred -CCCCCCCc--ccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHH
Confidence 11111111 000000011121111 1111 112455669999996 56899999999999999999999999999
Q ss_pred cchhhccccccCCCCCCCCcccccccccCCCCCCC
Q 001110 553 NADAVIDYSSAKSSHHSSRYYLLKKRAVSHGSSAD 587 (1155)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~ry~~~~~~~~~~~~~~~ 587 (1155)
....+.|+..+++ +..++...+.|..+-.++.+
T Consensus 982 l~~~~~d~~~Ai~--~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 982 LSNRLGDNQEAIA--QQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred HHhhhcchHHHHH--hcccceeeechhccCCCHHH
Confidence 9999999987765 45578888888887655443
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=8.3e-17 Score=199.07 Aligned_cols=248 Identities=14% Similarity=0.071 Sum_probs=194.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
....+..+..+|.+++.+|++++|+.+|++++.+ +|....+|..+|.++..+|++++|+.+|++++.+
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---- 394 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL---- 394 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 3556777889999999999999999999999987 5677889999999999999999999999999886
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 236 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
.|....+++++|.+|+.+|++++|+.+|++++.+ +|....++.++|.++..+|++++|+.+|++++++
T Consensus 395 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 395 ----NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3555778999999999999999999999999986 4556778999999999999999999999999986
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HH-HHHhHHHHHHHHhc
Q 001110 316 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE-YF-ESKAFEQQEAARNG 393 (1155)
Q Consensus 316 ~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La-~l-~qk~~e~AeAi~~~ 393 (1155)
. +....++..+|.+|..+|++++|+.+|++|+.+.... ...+........... .+ ..+.++.+..+...
T Consensus 463 ~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~k 533 (615)
T TIGR00990 463 F--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEK 533 (615)
T ss_pred C--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4 3445778899999999999999999999999874321 111122211111111 11 12344444433322
Q ss_pred CCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 394 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 394 ~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
....+ +....++..+|.++..+|++++|+.+|++++++..+..
T Consensus 534 Al~l~--------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 534 ALIID--------PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHhcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 21111 22344678899999999999999999999999987644
No 9
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.72 E-value=2.1e-16 Score=177.04 Aligned_cols=295 Identities=14% Similarity=0.085 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
.+...|-++|..|+..++|++|++|...-|.+.+.+ .+....+.+..+||.++-.+|.|++|+.++.+-|.+.++.
T Consensus 53 tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL-- 128 (639)
T KOG1130|consen 53 TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL-- 128 (639)
T ss_pred HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--
Confidence 345667889999999999999999999888776654 3344567788899999999999999999999999998886
Q ss_pred CCChhhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 297 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~--------------------yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~ 297 (1155)
.|......+|+|||.+|...|+ ++.|.++|+.-|++.+.+. +......+|-+||..|+
T Consensus 129 gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyY 206 (639)
T KOG1130|consen 129 GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYY 206 (639)
T ss_pred hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceee
Confidence 4556678999999999998875 4667788888888777642 34456788999999999
Q ss_pred HCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 001110 298 GLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 377 (1155)
Q Consensus 298 ~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La 377 (1155)
-+|+|++|+.+.+.-|.|.++. .+....-.++.+||.+|..+|+|+.|+++|++++.+..++ |..... .....-|+
T Consensus 207 lLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g~r~vE-AQscYSLg 282 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-GNRTVE-AQSCYSLG 282 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-cchhHH-HHHHHHhh
Confidence 9999999999999999999776 3444556789999999999999999999999999988776 332222 22222233
Q ss_pred HHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhcCCCCCCCCCCcch
Q 001110 378 YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSK 457 (1155)
Q Consensus 378 ~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~~e~~t~~~~Ia~~ 457 (1155)
..+.-..+.++++..-..++.......+.......++.||.+|...|..++|+.+.++++++..++....+......+..
T Consensus 283 Ntytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nls 362 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLS 362 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhH
Confidence 22222233444454444444444444455567788999999999999999999999999999988876554443334444
Q ss_pred hHhhh
Q 001110 458 EVLRE 462 (1155)
Q Consensus 458 E~~~E 462 (1155)
+...+
T Consensus 363 dl~~~ 367 (639)
T KOG1130|consen 363 DLILE 367 (639)
T ss_pred HHHHH
Confidence 44443
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.70 E-value=1.8e-15 Score=187.16 Aligned_cols=243 Identities=16% Similarity=0.108 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL----------- 229 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKAL----------- 229 (1155)
..++.+|.+|+..|++++|+..|.+++++ +|....+++.+|.+|..+|++++|+..|.+++
T Consensus 161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~ 232 (615)
T TIGR00990 161 VYYSNRAACHNALGDWEKVVEDTTAALEL--------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSA 232 (615)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 45788899999999999999999999987 56778899999999999999999876543332
Q ss_pred --------------------------------------------------------------------------------
Q 001110 230 -------------------------------------------------------------------------------- 229 (1155)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (1155)
T Consensus 233 ~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~ 312 (615)
T TIGR00990 233 QAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEE 312 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHH
Confidence
Q ss_pred --HHHHHhcC--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHH
Q 001110 230 --DINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 305 (1155)
Q Consensus 230 --ei~er~lG--~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deA 305 (1155)
..+++.+. ...+....++..+|.+++.+|++++|+.+|++++.+ +|....+++++|.++..+|++++|
T Consensus 313 A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 11222211 123556677888899999999999999999998875 456677888999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HHHh
Q 001110 306 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKA 383 (1155)
Q Consensus 306 le~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l--~qk~ 383 (1155)
+.+|++++++. +....+++.+|.+|..+|++++|+.+|++++++ .+++... +..++.+ ..+.
T Consensus 385 ~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~~~---~~~la~~~~~~g~ 448 (615)
T TIGR00990 385 EEDFDKALKLN--------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFIFS---HIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCHHH---HHHHHHHHHHCCC
Confidence 99999998763 233567888999999999999999999999875 3444433 2233333 3333
Q ss_pred HHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 001110 384 FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 384 ~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
++.+......... ..+...+++..+|.++..+|++++|+.+|++++++.+..
T Consensus 449 ~~eA~~~~~~al~--------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 449 IASSMATFRRCKK--------NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 3333333221111 123446788999999999999999999999999987653
No 11
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.68 E-value=6.1e-16 Score=173.46 Aligned_cols=268 Identities=17% Similarity=0.192 Sum_probs=209.3
Q ss_pred cchHHHHHHHHHHHhHH-HhhcccCCCCCCCchHHhHHhhchhhhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001110 108 VRKFAILRGLCHKVGIE-LVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKA 186 (1155)
Q Consensus 108 l~kl~LLreL~~k~Giq-L~ardY~fd~a~~f~~eDI~~L~pi~K~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eA 186 (1155)
...+.+|..|+.++|-. +..++| .++..|...|| -+.+........+..--++|.++...|.|++|+.++.+-
T Consensus 48 TeDl~tLSAIYsQLGNAyfyL~DY--~kAl~yH~hDl----tlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rh 121 (639)
T KOG1130|consen 48 TEDLSTLSAIYSQLGNAYFYLKDY--EKALKYHTHDL----TLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRH 121 (639)
T ss_pred chHHHHHHHHHHHhcchhhhHhhH--HHHHhhhhhhH----HHHHHhcchhccccccccccchhhhhcccchHHHHHHHH
Confidence 46778888998888864 444555 45556666666 244555666677777888999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 001110 187 LAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD--------------------FNQATIYQQKALDINERELGLDHPDTMKS 246 (1155)
Q Consensus 187 Lel~e~i~G~d~p~~A~al~nLG~vy~~~Gd--------------------ydeAle~~eKALei~er~lG~D~p~~a~a 246 (1155)
|.+.+++ .+....+++|++||.+|...|+ ++.|.++|+.-|++.++. .|......+
T Consensus 122 Ld~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa 197 (639)
T KOG1130|consen 122 LDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL--GDRLAQGRA 197 (639)
T ss_pred hHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcch
Confidence 9998887 3445668899999999988775 456777777777777664 455667789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHH
Q 001110 247 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 326 (1155)
Q Consensus 247 y~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~ 326 (1155)
|.+||..|+-+|+|+.|+.+.+.-|.|.++. | +....-.++.|||.+|.-+|+|+.|+++|++++.+..++ .+...
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-G-DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel--g~r~v 273 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-G-DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL--GNRTV 273 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHh-h-hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh--cchhH
Confidence 9999999999999999999999999998874 3 344566789999999999999999999999999999877 44556
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 391 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~ 391 (1155)
-++.+|.||..|....++++|+.|+++-+.|.+++- +......+..-|+..........+++.
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 788999999999999999999999999999998763 223333444444444444444444443
No 12
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.6e-15 Score=179.67 Aligned_cols=249 Identities=11% Similarity=0.054 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------------HHHhcCCCChhhHHHHHHHHHH
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAK--------------------------LVAVCGPYHRMTAGAYSLLAVV 211 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel--------------------------~e~i~G~d~p~~A~al~nLG~v 211 (1155)
..+..+.++|+.|+..++|++|..+|+.+-++ +.+.+-..++....+|..+|.|
T Consensus 351 nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNc 430 (638)
T KOG1126|consen 351 NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNC 430 (638)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcch
Confidence 34578899999999999999999999887554 1111122356667789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001110 212 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 291 (1155)
Q Consensus 212 y~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~n 291 (1155)
|..+++++.|+.+|++|+++ ++..+.+|..+|.-+..+.+||+|..+|++||.+ ++....+|+.
T Consensus 431 fSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYG 494 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYG 494 (638)
T ss_pred hhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHh
Confidence 99999999999999999997 5778899999999999999999999999999985 5667889999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 001110 292 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD 371 (1155)
Q Consensus 292 LA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~ 371 (1155)
||.+|.++++++.|+-+|++|+++. |....++..+|.++.++|+.++|+++|++|+.+ ++.++....
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-----d~kn~l~~~ 561 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-----DPKNPLCKY 561 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-----CCCCchhHH
Confidence 9999999999999999999999985 555667778999999999999999999999954 566665544
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 372 AAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 372 al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
-...+..... .++.+....+.. ....++-+.++..+|.+|...|+.+.|+..|--|+.+.++-.
T Consensus 562 ~~~~il~~~~-~~~eal~~LEeL--------k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 562 HRASILFSLG-RYVEALQELEEL--------KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHhhc-chHHHHHHHHHH--------HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 4433332222 222221111111 111234567899999999999999999999999999888744
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=1.4e-13 Score=144.24 Aligned_cols=171 Identities=21% Similarity=0.218 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
...+..++.+|..++..|++++|+.+++++++. ++....++..+|.+|..+|++++|+.++++++.+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 94 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL----- 94 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 344778889999999999999999999999876 4566789999999999999999999999999986
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.+....++.++|.++..+|++++|+++|++++... ..+.....+.++|.++...|++++|..+|.+++...
T Consensus 95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 23445688999999999999999999999998741 234456678899999999999999999999999864
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 317 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
++ ....+..+|.++...|++++|..++++++.+
T Consensus 166 -----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 166 -----PQ---RPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred -----cC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 3456788999999999999999999988764
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.57 E-value=4.5e-13 Score=155.26 Aligned_cols=246 Identities=13% Similarity=0.041 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
.....++.+|..+...|++++|+.++++++... .........++..||.+|...|++++|+.+|++++..
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------ 136 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE------ 136 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------
Confidence 346678889999999999999999999887631 0111234567899999999999999999999999864
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.+....++..++.++...|++++|++++++++.... ..........+..+|.++...|++++|+.+|+++++..
T Consensus 137 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 210 (389)
T PRK11788 137 --GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD- 210 (389)
T ss_pred --CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-
Confidence 344567889999999999999999999999876421 11122345567889999999999999999999999864
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHHHhHHHHHHHHhcCC
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTR 395 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La--~l~qk~~e~AeAi~~~~~ 395 (1155)
+....+++.+|.+|...|++++|+.++++++.. ++.+. ......+. +...+..+.+........
T Consensus 211 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 211 -------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYL--SEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred -------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234567888999999999999999999998865 22221 12222333 223333333333222111
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 396 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 396 ~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
.. .+.. ..+..++.++..+|++++|+.+|+++++..+.
T Consensus 277 ~~--------~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 277 EE--------YPGA-DLLLALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred Hh--------CCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 10 1111 23478999999999999999999999988654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.57 E-value=2.9e-13 Score=156.81 Aligned_cols=244 Identities=11% Similarity=0.033 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+...+.+|..+...|++++|+.+|.++++. +|....++..+|.+|...|++++|+.++++++... ...
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~ 102 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLT 102 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCC
Confidence 455677788999999999999999999986 46667899999999999999999999999887631 111
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
......++..||.+|...|++++|+.+|++++.. ++....++..++.++...|++++|+.+++++++....
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~- 173 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD- 173 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-
Confidence 1233467899999999999999999999998863 3455678899999999999999999999998875311
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HHHhHHHHHHHHhcCCCC
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQEAARNGTRKP 397 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l--~qk~~e~AeAi~~~~~~~ 397 (1155)
.........+..+|.++..+|++++|+.+|++++++ .+++.. +...++.+ ..+..+.+..+.......
T Consensus 174 --~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 174 --SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-----DPQCVR---ASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred --cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-----CcCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 112234556778999999999999999999999875 233333 23333333 333344443332221111
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 398 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 398 ~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
.......++..++.+|..+|++++|+.++++++++.+
T Consensus 244 -------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 244 -------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred -------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 1113356778899999999999999999999988743
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.55 E-value=6.3e-13 Score=165.92 Aligned_cols=249 Identities=12% Similarity=0.000 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-----
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN----- 232 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~----- 232 (1155)
.....++.+|..+...|++++|+..|++++.+ .|....++..+|.++..+|++++|+..+++++...
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~ 179 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD 179 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH
Confidence 33556777788888888888888888888876 45556677778888888888888877776654321
Q ss_pred ---------------------HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001110 233 ---------------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 291 (1155)
Q Consensus 233 ---------------------er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~n 291 (1155)
++.+..+.......+..++.++..+|++++|+..|++++.+ +|....++++
T Consensus 180 a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~ 251 (656)
T PRK15174 180 MIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRS 251 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHH
Confidence 11111111111122344567777788888888888887764 3555778889
Q ss_pred HHHHHHHCCChHH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCH
Q 001110 292 VAMMEEGLGNVHV----ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL 367 (1155)
Q Consensus 292 LA~iy~~lG~~de----Ale~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~ 367 (1155)
+|.+|..+|++++ |+.+|++++++. |....++..+|.++..+|++++|+.++++++++ .++++
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~ 318 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLP 318 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH
Confidence 9999999999986 799999998864 445678899999999999999999999999875 56666
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 368 RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 368 ~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
.....+. ..+...+.++.+......... ..+.....+..+|.++...|++++|+.+|++++++.++..
T Consensus 319 ~a~~~La-~~l~~~G~~~eA~~~l~~al~--------~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 319 YVRAMYA-RALRQVGQYTAASDEFVQLAR--------EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHH-HHHHHCCCHHHHHHHHHHHHH--------hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 5433322 122233334433333221111 1122334566678899999999999999999999988765
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.51 E-value=1.7e-12 Score=147.14 Aligned_cols=228 Identities=12% Similarity=0.004 Sum_probs=162.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 001110 174 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 253 (1155)
Q Consensus 174 GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~i 253 (1155)
+..+.++..+.++|.... .+....+..|+.+|.+|...|++++|+..|++|+.+ .|+...+|+++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~ 107 (296)
T PRK11189 40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY 107 (296)
T ss_pred hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 456778888888775421 133456889999999999999999999999999996 46678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001110 254 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 333 (1155)
Q Consensus 254 y~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~n 333 (1155)
|..+|++++|+..|++++++ .|....++.++|.++...|++++|+..|++++++. ++++.. ..+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~~-- 171 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----PNDPYR-ALW-- 171 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HHH--
Confidence 99999999999999999986 45567789999999999999999999999999864 444421 111
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHH
Q 001110 334 IAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLL 413 (1155)
Q Consensus 334 LA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL 413 (1155)
..++...+++++|+..|.++.... .++.... .+..+..+....++++........... ...+...+.|
T Consensus 172 -~~l~~~~~~~~~A~~~l~~~~~~~----~~~~~~~-----~~~~~~lg~~~~~~~~~~~~~~~~~~~--~l~~~~~ea~ 239 (296)
T PRK11189 172 -LYLAESKLDPKQAKENLKQRYEKL----DKEQWGW-----NIVEFYLGKISEETLMERLKAGATDNT--ELAERLCETY 239 (296)
T ss_pred -HHHHHccCCHHHHHHHHHHHHhhC----CccccHH-----HHHHHHccCCCHHHHHHHHHhcCCCcH--HHHHHHHHHH
Confidence 223446789999999997765321 2222111 122222222222222221111111000 0112467899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 414 DYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 414 ~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
+++|.+|..+|++++|+.+|++++++..
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999998874
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.51 E-value=1.9e-12 Score=162.32 Aligned_cols=175 Identities=21% Similarity=0.205 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI------- 231 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei------- 231 (1155)
....++..|..++.+|++++|+..+.+++.+ +|....+++.+|.+|..+|++++|+.++++++..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 92 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQV 92 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhh
Confidence 4567888999999999999999999999976 5677789999999999999999999999988763
Q ss_pred --------------------HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001110 232 --------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 291 (1155)
Q Consensus 232 --------------------~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~n 291 (1155)
+.+....+.+....++..+|.+|...|++++|+.+|++++.. +|....++..
T Consensus 93 ~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~ 164 (899)
T TIGR02917 93 LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLG 164 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHH
Confidence 111112244556677888999999999999999999988874 2344567888
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 292 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 292 LA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|+..|++++..
T Consensus 165 la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 165 LAQLALAENRFDEARALIDEVLTAD--------PGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8999999999999999998887753 223456777888888888888888888888754
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.51 E-value=7.2e-13 Score=161.96 Aligned_cols=330 Identities=16% Similarity=0.102 Sum_probs=229.9
Q ss_pred HHHHHhHHHhhcccCCCCCCCchHHhHHhhch----------hh----hhhcCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q 001110 117 LCHKVGIELVSRDFDMDSPSPFRKIDVVSLVP----------VH----KQAACSSADGRQLLESSKTALDKGKLEDAVTY 182 (1155)
Q Consensus 117 L~~k~GiqL~ardY~fd~a~~f~~eDI~~L~p----------i~----K~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~ 182 (1155)
...+.|+++..+.|......|....-+.+.+- +. +........++.+|++|+.|..+|+|++|..|
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 45678888888888887776655444433221 11 22234456678899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------------------------------
Q 001110 183 GTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI------------------------------- 231 (1155)
Q Consensus 183 ~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei------------------------------- 231 (1155)
|.+++.... + .....++.||.+|...|+++.|..+|++.+..
T Consensus 330 Y~~s~k~~~-----d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 330 YMESLKADN-----D--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHHHccCC-----C--CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 999987621 1 12344556666666666666665555554332
Q ss_pred ----------------------------------------HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001110 232 ----------------------------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 271 (1155)
Q Consensus 232 ----------------------------------------~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekAL 271 (1155)
++... ++--...++|+|..++.+|++.+|..+|.+|+
T Consensus 403 l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~---~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 403 LGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKG---KQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcC---CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 21111 11123456899999999999999999999999
Q ss_pred HHHHHhcCCCC--hhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHH
Q 001110 272 YLLHLTCGPSH--PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 349 (1155)
Q Consensus 272 ei~e~l~G~dh--p~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle 349 (1155)
..+......+. .......+|||.++..+++++.|.+.|...+.. ||....+|..||.+....++..+|..
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHH
Confidence 98553322221 123567899999999999999999999988764 58889999999988889999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHH---------
Q 001110 350 HEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH--------- 420 (1155)
Q Consensus 350 ~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y--------- 420 (1155)
+++.++++ ...++..+..+..+..-.++.....+............ .-.-.+..||++|
T Consensus 552 ~lk~~l~~-----d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~-------~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 552 LLKDALNI-----DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK-------TDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HHHHHHhc-----ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC-------CchhHHHHhhHHHHHHhccccc
Confidence 99999976 56778777766655443333322222211110011100 0011222344443
Q ss_pred ---HHcCChHHHHHHHHHHHHHhhhhcCCCCCCCCCCcchhHhhhcccccccCCCCCCC
Q 001110 421 ---DTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESSDEETHAPEPESD 476 (1155)
Q Consensus 421 ---~~qGdyeeAle~yeKALeL~~kl~~e~~t~~~~Ia~~E~~~E~~ekek~I~el~~~ 476 (1155)
..++.+++|+..|.|+|+..+++....++..+.++++.-..++.+.+++|+|...+
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~ 678 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD 678 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh
Confidence 24677888999999999999999999999999999999999999999999998873
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.50 E-value=3.2e-12 Score=159.57 Aligned_cols=246 Identities=12% Similarity=0.031 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
....++.+|...+..|++++|+..|++++.+ +|....++..+|.++..+|++++|+..|++++.+
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l------- 139 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA------- 139 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 3567888888899999999999999999987 6777889999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------HHhcCCCChhHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL--------------------------HLTCGPSHPNTAATYINV 292 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~--------------------------e~l~G~dhp~~a~a~~nL 292 (1155)
.|....++..+|.++..+|++++|+..|++++... +.......+.....+..+
T Consensus 140 -~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l 218 (656)
T PRK15174 140 -FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLA 218 (656)
T ss_pred -CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 35556778888888999999999988887665421 000000000111122345
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhH----HHHHHHHHHHHHHHHcCCCCHH
Q 001110 293 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL----SVQHEQTTLQILRAKLGPDDLR 368 (1155)
Q Consensus 293 A~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyee----Ale~lkkALeI~kk~lG~dh~~ 368 (1155)
+.++...|++++|+..|++++++. +....+++++|.+|..+|++++ |+.+|++++++ .+++..
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~ 285 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARG--------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVR 285 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHH
Confidence 667777777777777777777642 3345778889999999999986 78888888865 456554
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 369 TQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 369 t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
....+..+ ++..+.++.+......... ..+....++..+|.+|..+|++++|+..|++++...+.
T Consensus 286 a~~~lg~~-l~~~g~~~eA~~~l~~al~--------l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 286 IVTLYADA-LIRTGQNEKAIPLLQQSLA--------THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHHHHH-HHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 44433322 2222333333322221111 12344567888999999999999999999999876543
No 21
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.50 E-value=1.2e-12 Score=139.57 Aligned_cols=169 Identities=20% Similarity=0.155 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
...+...+++|.-|+..|++..|...+++||++ +|....+|..+|.+|...|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 344678899999999999999999999999988 7888899999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+|....+++|.|.+++.+|+|++|..+|++|+. .+..+....++-|+|.|..+.|+++.|..+|+++|++.
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 577889999999999999999999999999997 35666778999999999999999999999999999985
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 317 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
++.......++..++..|+|..|..++++..
T Consensus 170 --------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 170 --------PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred --------cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3344567789999999999999999887544
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.49 E-value=4.8e-12 Score=167.36 Aligned_cols=254 Identities=15% Similarity=0.026 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-----------hHHHHHHHHHHHHhcCCHHHHHHHH
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-----------TAGAYSLLAVVLYHTGDFNQATIYQ 225 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~-----------~A~al~nLG~vy~~~GdydeAle~~ 225 (1155)
......++.+|.+++.+|++++|+.+|++++++.. ++.. ....+..+|.++...|++++|+.+|
T Consensus 300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p-----~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDP-----HSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34467788999999999999999999999998732 1111 1123345688999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh---------------------
Q 001110 226 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN--------------------- 284 (1155)
Q Consensus 226 eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~--------------------- 284 (1155)
++++.+ +|....++..||.+|..+|++++|+++|++++.+. +++..
T Consensus 375 ~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 375 QQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999997 35566789999999999999999999999999752 11111
Q ss_pred ------------------HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhH
Q 001110 285 ------------------TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 346 (1155)
Q Consensus 285 ------------------~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyee 346 (1155)
....+..+|.++...|++++|+.+|++++++. + ....+++.+|.+|..+|++++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P---~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----P---GSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHcCCHHH
Confidence 01234457788888999999999999999874 3 344678899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhc--------------------------------C
Q 001110 347 SVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNG--------------------------------T 394 (1155)
Q Consensus 347 Ale~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~--------------------------------~ 394 (1155)
|+..++++++. .++++.....+..+ ....+..+.+...... .
T Consensus 514 A~~~l~~al~~-----~P~~~~~~~a~al~-l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 514 ADALMRRLAQQ-----KPNDPEQVYAYGLY-LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred HHHHHHHHHHc-----CCCCHHHHHHHHHH-HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999998864 34555443322211 1111111111100000 0
Q ss_pred CCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 395 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 395 ~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
...........++.-..++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~ 635 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG 635 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 000000000112233456678888889999999999999988886543
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.9e-12 Score=148.76 Aligned_cols=247 Identities=15% Similarity=0.068 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..++.+...|..++..|++-.|.+.|..++.+ ++.....|..+|.+|....+-++....|.+|..+
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------ 389 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------ 389 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc------
Confidence 34788888999999999999999999999988 4444455889999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
+|.....|+..|.+++-+++|++|+.-|++++.+ +|..+..|..++.+++++++++++...|+.+.+.+
T Consensus 390 --dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF- 458 (606)
T KOG0547|consen 390 --DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF- 458 (606)
T ss_pred --CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 5667788999999999999999999999999986 67789999999999999999999999999998876
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGTRK 396 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~d-h~~t~~al~~La~l~qk~~e~AeAi~~~~~~ 396 (1155)
|....+|...|.++..+++|++|++.|++|+++-....+-- .+..+--...+.....+...++..+......
T Consensus 459 -------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 459 -------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred -------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence 55667888899999999999999999999998743311100 1111111111111122444445444433333
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 397 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 397 ~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
.+ +.....+..||.+..++|+.++|+++|++++.+.++-.
T Consensus 532 ~D--------pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 532 LD--------PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred cC--------chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 33 34566788999999999999999999999999987754
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.47 E-value=7.8e-12 Score=156.89 Aligned_cols=244 Identities=19% Similarity=0.177 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...+..+|.++...|++++|+.+|++++++ .+....++..+|.++...|++++|+.+|++++..
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------- 528 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSI--------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI-------- 528 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 456677788888888888888888888765 3444556777777777777777777777777654
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------------------------HhcCCCChhHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH---------------------------LTCGPSHPNTAATYINV 292 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e---------------------------~l~G~dhp~~a~a~~nL 292 (1155)
.+....++..++.++...|++++|+.++++++.... ... ..++....++..+
T Consensus 529 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l 607 (899)
T TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA-DAAPDSPEAWLML 607 (899)
T ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCHHHHHHH
Confidence 122334455555555555555555555555433200 000 0122233456666
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 001110 293 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 372 (1155)
Q Consensus 293 A~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~a 372 (1155)
|.+|...|++++|+.+|+++++.. +.....+..+|.+|...|++++|+.+|++++.+ .+++......
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~ 674 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQ--------PDSALALLLLADAYAVMKNYAKAITSLKRALEL-----KPDNTEAQIG 674 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHH
Confidence 666666666666666666666542 122345566677777777777777777666643 2343333222
Q ss_pred HHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 373 AAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 373 l~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
+..+ +...+..+.+..+..... ...+.....+..+|.++...|++++|+.+|++++...+.
T Consensus 675 l~~~-~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 675 LAQL-LLAAKRTESAKKIAKSLQ--------KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred HHHH-HHHcCCHHHHHHHHHHHH--------hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 2211 122222333322221110 111234456778899999999999999999998886543
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.47 E-value=2.8e-12 Score=169.50 Aligned_cols=240 Identities=14% Similarity=0.072 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
.+..+|..+...|++++|+.+|++++++ +|....+++.||.+|..+|++++|+..+++++.. +|
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~P 526 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------KP 526 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CC
Confidence 4556788999999999999999999987 5666778999999999999999999999999875 34
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------------HHHHHhcCCCChh
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRAL-------------------------------------YLLHLTCGPSHPN 284 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekAL-------------------------------------ei~e~l~G~dhp~ 284 (1155)
.....++.+|.++...+++++|+.+++++. .+++ .+|.
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCC
Confidence 445667777888888888888887776531 1111 1344
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCC
Q 001110 285 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 364 (1155)
Q Consensus 285 ~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~ 364 (1155)
....+..+|.+|..+|++++|+.+|++++++. |....+++++|.+|...|++++|+++|+++++. .+
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-----~p 668 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-----AN 668 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CC
Confidence 45677889999999999999999999999864 334577899999999999999999999977653 35
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001110 365 DDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 438 (1155)
Q Consensus 365 dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALe 438 (1155)
++......+.. .+...+..+.+..+.......... .......+.++..+|.++..+|++++|+.+|++|+.
T Consensus 669 ~~~~~~~~la~-~~~~~g~~~eA~~~~~~al~~~~~--~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 DSLNTQRRVAL-AWAALGDTAAAQRTFNRLIPQAKS--QPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CChHHHHHHHH-HHHhCCCHHHHHHHHHHHhhhCcc--CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55554433332 223334444444433322211100 000112356777889999999999999999999985
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.1e-12 Score=144.15 Aligned_cols=191 Identities=19% Similarity=0.210 Sum_probs=164.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 001110 166 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 245 (1155)
Q Consensus 166 lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ 245 (1155)
.|..|..+++.++|+.||++||++ +|....+|..+|.-|..+.+...|++.|++|+++ .|....
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyR 399 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYR 399 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHH
Confidence 377788889999999999999998 7888999999999999999999999999999998 466778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcH
Q 001110 246 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 325 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp 325 (1155)
+++.||..|.-++...=|+-||++|+.+ .|.....|..||.+|..+++.++|+.+|.+|+.... .
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d------t- 464 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD------T- 464 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc------c-
Confidence 9999999999999999999999999985 344467788899999999999999999999998641 1
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHH
Q 001110 326 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA 389 (1155)
Q Consensus 326 ~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeA 389 (1155)
...++..||.+|.+++++.+|..+|++.++.. ..-|...+.+..+..||+....+..+..++
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 34678899999999999999999999999876 455777788888888888665554444433
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=2e-12 Score=153.78 Aligned_cols=231 Identities=16% Similarity=0.134 Sum_probs=169.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------
Q 001110 172 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE------------------ 233 (1155)
Q Consensus 172 ~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e------------------ 233 (1155)
.+-+..+|+..|.+ + ...+..+..++..+|..|+++++|++|..+|+.+-.+..
T Consensus 331 s~y~~~~A~~~~~k-l-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 331 SQYNCREALNLFEK-L-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHHHHHh-h-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 33444556665555 2 223567778999999999999999999999988644311
Q ss_pred --------HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHH
Q 001110 234 --------RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 305 (1155)
Q Consensus 234 --------r~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deA 305 (1155)
+.+-..++....+|+.+|.||..+++++.|+++|++|+++ +|..+.+|.-+|.=+.....||.|
T Consensus 403 ~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a 474 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKA 474 (638)
T ss_pred hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhH
Confidence 1112234566778999999999999999999999999986 677788899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HHHh
Q 001110 306 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKA 383 (1155)
Q Consensus 306 le~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l--~qk~ 383 (1155)
..+|++||.+. +..-.+|+.||.+|.++++++.|+-+|++|++| .+.. ...+..++.+ ..+.
T Consensus 475 ~~~fr~Al~~~--------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-----NP~n---svi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 475 MKSFRKALGVD--------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-----NPSN---SVILCHIGRIQHQLKR 538 (638)
T ss_pred HHHHHhhhcCC--------chhhHHHHhhhhheeccchhhHHHHHHHhhhcC-----Cccc---hhHHhhhhHHHHHhhh
Confidence 99999999875 445688999999999999999999999999987 3333 3333333333 3333
Q ss_pred HHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 384 FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 384 ~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
.+.+..+.+.+...+.. -.-.-+..+.++...++|++|+..+++.-++.++
T Consensus 539 ~d~AL~~~~~A~~ld~k--------n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 539 KDKALQLYEKAIHLDPK--------NPLCKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred hhHHHHHHHHHHhcCCC--------CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 44444443333333311 1123456788889999999999999987666544
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.42 E-value=9.5e-12 Score=160.13 Aligned_cols=236 Identities=16% Similarity=0.028 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|.++.. +++++|+..|.+++... |.. .....+|.++...|++++|+.+|++++..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~------- 538 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQHRAVAYQAYQVEDYATALAAWQKISLH------- 538 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHHHHHHHHHHHCCCHHHHHHHHHHHhcc-------
Confidence 56678889988887 89999999999998762 332 23566788888999999999999997543
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
.+. ...+.++|.++...|++++|+.+|++++.+ +|.....+..++..+..+|++++|+.+|++|+++.
T Consensus 539 -~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-- 606 (987)
T PRK09782 539 -DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-- 606 (987)
T ss_pred -CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence 111 234678899999999999999999999875 24445556667777778899999999999999874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCc
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 398 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~ 398 (1155)
|. ...+.++|.++.++|++++|+.+|++++.+ .++++.... .++.+.....+.++++......
T Consensus 607 ------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~~a~~---nLG~aL~~~G~~eeAi~~l~~A-- 669 (987)
T PRK09782 607 ------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNSNYQA---ALGYALWDSGDIAQSREMLERA-- 669 (987)
T ss_pred ------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHH---HHHHHHHHCCCHHHHHHHHHHH--
Confidence 23 567899999999999999999999999976 577775443 3443333333333333221111
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 399 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 399 ~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
....+...+++..+|.++..+|++++|+.+|++++++.+...
T Consensus 670 ----L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 670 ----HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred ----HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 112234567899999999999999999999999999887544
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=2.2e-11 Score=149.42 Aligned_cols=171 Identities=15% Similarity=0.054 Sum_probs=137.4
Q ss_pred cCChHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHH
Q 001110 154 ACSSADGRQLLESSKTALD---------KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY 224 (1155)
Q Consensus 154 ~~~s~~A~~Ll~lG~~yl~---------~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~ 224 (1155)
......+..+..+|.++.. .+++++|+.++++|+++ +|....++..+|.++..+|++++|+.+
T Consensus 289 ~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~ 360 (553)
T PRK12370 289 NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLL 360 (553)
T ss_pred hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 3334445556666665543 34589999999999987 677788999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHH
Q 001110 225 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 304 (1155)
Q Consensus 225 ~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~de 304 (1155)
|++|+++ .|+...+++.+|.+|..+|++++|+.+|++++.+ . |.....+..++.++...|++++
T Consensus 361 ~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~---P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 361 FKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKL-----D---PTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C---CCChhhHHHHHHHHHhccCHHH
Confidence 9999997 4667788999999999999999999999999986 2 3333344556667788999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 305 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 305 Ale~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
|+.+++++++.. .+.....+.++|.+|..+|++++|..++++..
T Consensus 425 A~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 425 AIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 999999987653 13344567889999999999999999987754
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=3.7e-11 Score=147.41 Aligned_cols=236 Identities=12% Similarity=0.036 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhc---------CCHHHHHHHHH
Q 001110 159 DGRQLLESSKTALDK---GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---------GDFNQATIYQQ 226 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~---GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~---------GdydeAle~~e 226 (1155)
++..++..|..++.. +.+++|+.+|++|+++ +|..+.+|..||.+|..+ +++++|+.+++
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 444566667655443 4578899999999877 677788899999887643 44899999999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHH
Q 001110 227 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL 306 (1155)
Q Consensus 227 KALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAl 306 (1155)
+|+++ .|+...++..+|.++..+|++++|+.+|++|+.+ +|....+++++|.+|...|++++|+
T Consensus 329 ~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 329 KATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99987 4667788999999999999999999999999986 4556778999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHH
Q 001110 307 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ 386 (1155)
Q Consensus 307 e~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~ 386 (1155)
.+|++|+++. +.++ ..++.++.++...|++++|+.++++++.. ..++++.....+. ..+...+..+.
T Consensus 393 ~~~~~Al~l~-----P~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~----~~p~~~~~~~~la-~~l~~~G~~~e 459 (553)
T PRK12370 393 QTINECLKLD-----PTRA---AAGITKLWITYYHTGIDDAIRLGDELRSQ----HLQDNPILLSMQV-MFLSLKGKHEL 459 (553)
T ss_pred HHHHHHHhcC-----CCCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHh----ccccCHHHHHHHH-HHHHhCCCHHH
Confidence 9999999875 3332 33444566677799999999999887743 1244444322222 22223344444
Q ss_pred HHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 387 QEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 387 AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
+.......... .+.-......++..|..+|+ +|...+++.++...
T Consensus 460 A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 460 ARKLTKEISTQ--------EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHhhhc--------cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 44433221111 11233455667777777774 77777777655544
No 31
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.39 E-value=1.6e-10 Score=131.07 Aligned_cols=175 Identities=18% Similarity=0.110 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|.++...|++++|+..|++++++ +|....+|+++|.+|..+|++++|+..|++++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------ 127 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------ 127 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 44778999999999999999999999999987 5777889999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.|+...++.++|.+++..|++++|++.|++++.+ .++++.. ..+ ..++...+++++|+..|.+++....
T Consensus 128 --~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 128 --DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHHHHHHHHhhCC
Confidence 4666788999999999999999999999999985 3444421 111 1234456778888888866553210
Q ss_pred ----------HhcCCC-------------------cHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 318 ----------RLLGPD-------------------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 318 ----------k~lG~d-------------------hp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
-.+|.. .+....+|+++|.+|..+|++++|+.+|++|+++
T Consensus 197 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 197 KEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 011111 1123467999999999999999999999999965
No 32
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=3.3e-11 Score=128.78 Aligned_cols=208 Identities=17% Similarity=0.166 Sum_probs=161.2
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
...+.+...||.-|+..|++..|...+++||++ +|....++..+|.+|..+|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 355778899999999999999999999999997 6788899999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 279 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
+|..+++++|.|..++.+|++++|..+|++|+.. +.....+.++.|+|.|..++|+++.|..+|++++++
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~- 168 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL- 168 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-
Confidence 6778899999999999999999999999999974 455667789999999999999999999999999987
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001110 359 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 438 (1155)
Q Consensus 359 kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALe 438 (1155)
.++.+.....+..+.+... .+-.+..+...... .. ...++.|.....+....|+-+.|..|=.+..+
T Consensus 169 ----dp~~~~~~l~~a~~~~~~~-~y~~Ar~~~~~~~~-------~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 169 ----DPQFPPALLELARLHYKAG-DYAPARLYLERYQQ-------RG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ----CcCCChHHHHHHHHHHhcc-cchHHHHHHHHHHh-------cc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555544444443333222 22222222111100 00 12344555666777889999988888766666
Q ss_pred Hhhh
Q 001110 439 VKGN 442 (1155)
Q Consensus 439 L~~k 442 (1155)
.++.
T Consensus 236 ~fP~ 239 (250)
T COG3063 236 LFPY 239 (250)
T ss_pred hCCC
Confidence 6554
No 33
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=8e-12 Score=146.17 Aligned_cols=216 Identities=19% Similarity=0.162 Sum_probs=178.8
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001110 155 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 234 (1155)
Q Consensus 155 ~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er 234 (1155)
..+..+-.++..|..|+..|++.+|..+|.+|-.+ ++..+.+|..+|..|...|+.++|+..|..|-++...
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 34444566888899999999999999999999877 6778899999999999999999999999999887532
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001110 235 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 314 (1155)
Q Consensus 235 ~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALe 314 (1155)
.-.-+..+|.-|.++++++.|.++|.+|+.++ +.+ .-.+..+|.+.+..+.|.+|..+|++++.
T Consensus 379 --------~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-----P~D---plv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 379 --------CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-----PSD---PLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred --------CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-----CCc---chhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 22335568999999999999999999999973 334 45678899999999999999999999997
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 001110 315 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT 394 (1155)
Q Consensus 315 i~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~ 394 (1155)
..+... ...+...-.+.|||.+|.+++.+++|+.++++++.+. +.+
T Consensus 443 ~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-----~k~---------------------------- 488 (611)
T KOG1173|consen 443 VIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-----PKD---------------------------- 488 (611)
T ss_pred Hhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-----CCc----------------------------
Confidence 665553 3334556678999999999999999999999998652 222
Q ss_pred CCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 001110 395 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 395 ~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
.+++..+|-+|..+|+++.|+++|.+||.+.+..
T Consensus 489 ---------------~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 489 ---------------ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred ---------------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 2356678888999999999999999999887654
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.38 E-value=4.4e-11 Score=129.86 Aligned_cols=178 Identities=19% Similarity=0.224 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..++..|++++|+..|++++... +.++....+++.+|.+|..+|++++|+..|++++...
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~----- 100 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH----- 100 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----
Confidence 346788999999999999999999999998763 3455666789999999999999999999999999874
Q ss_pred CCChhhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------HHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRL--------QHTELALKYVKRALYLLHLTCGPSHPNTAA--------------TYINVAMM 295 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~l--------G~yeeAle~yekALei~e~l~G~dhp~~a~--------------a~~nLA~i 295 (1155)
++++....+++.+|.+++.. |++++|++.|++++... +++..... ....+|.+
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667889999999987 88999999999998752 33332222 22478999
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 296 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 296 y~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
|..+|++++|+..|+++++.. ++++....+++.+|.+|..+|++++|..+++...
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999876 5567778999999999999999999999876543
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.37 E-value=4.8e-11 Score=153.74 Aligned_cols=233 Identities=15% Similarity=-0.005 Sum_probs=178.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~ 242 (1155)
.+.+|..+...|++++|+..|++++.. .+. ...+..+|.++...|++++|+.+|++++.+ .+.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~ 574 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLG 574 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCc
Confidence 455677778999999999999987543 111 234678899999999999999999999875 244
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCC
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 322 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~ 322 (1155)
....+..++..+..+|++++|+.+|++++.+ .|. ...+.++|.++.++|++++|+.+|++++.+.
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------ 639 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE------ 639 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------
Confidence 4555666777777889999999999999986 344 6789999999999999999999999999875
Q ss_pred CcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhh
Q 001110 323 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIA 402 (1155)
Q Consensus 323 dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a 402 (1155)
|....++.++|.++...|++++|+.+|++++++ .++++.....+.++ +...+..+.+..........+
T Consensus 640 --Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~nLA~a-l~~lGd~~eA~~~l~~Al~l~---- 707 (987)
T PRK09782 640 --PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-----LPDDPALIRQLAYV-NQRLDDMAATQHYARLVIDDI---- 707 (987)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcC----
Confidence 445578999999999999999999999999976 57777654444433 233334444444333222222
Q ss_pred hcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 001110 403 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 403 ~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
+..+.+...+|.+...+.+++.|.+.|.++..+....
T Consensus 708 ----P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 708 ----DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred ----CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 3456677788888888888888888888877765543
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=4.6e-11 Score=135.52 Aligned_cols=232 Identities=15% Similarity=0.115 Sum_probs=173.9
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 164 LESSKTALDK--GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 164 l~lG~~yl~~--GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
.++..+++.+ .+|.+|.+|...|+.+ +...+.++.+.|.+.+..|++++|.++|++||.- +.
T Consensus 458 ~nl~~l~flqggk~~~~aqqyad~aln~--------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------da 521 (840)
T KOG2003|consen 458 NNLCALRFLQGGKDFADAQQYADIALNI--------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--------DA 521 (840)
T ss_pred hhhHHHHHHhcccchhHHHHHHHHHhcc--------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--------ch
Confidence 3444444443 3688899998888876 5677888999999999999999999999999863 45
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
....+++|+|..+..+|++++|+++|.+.-.++.. .+.+++.+|.+|..+.+..+|+++|-++..+.
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~il~n--------n~evl~qianiye~led~aqaie~~~q~~sli----- 588 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN--------NAEVLVQIANIYELLEDPAQAIELLMQANSLI----- 588 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----
Confidence 56789999999999999999999999998777543 47889999999999999999999999988765
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhh
Q 001110 322 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI 401 (1155)
Q Consensus 322 ~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~ 401 (1155)
++. ..++..||.+|-+.|+-.+|.+++-..+..| |-.+....||+.++..-.-..+++......
T Consensus 589 p~d---p~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayyidtqf~ekai~y~eka----- 652 (840)
T KOG2003|consen 589 PND---PAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSEKAINYFEKA----- 652 (840)
T ss_pred CCC---HHHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence 344 4667889999999999999999887766543 344556677764333222122222211111
Q ss_pred hhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 402 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 402 a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
.-..+.+......++.+++..|+|++|+..|++..+.++
T Consensus 653 -aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 653 -ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred -HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 011234555667899999999999999999987655444
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.2e-11 Score=137.42 Aligned_cols=243 Identities=13% Similarity=0.153 Sum_probs=176.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH----------HHHh----------------cCCCChhhHHHHHHHHHHHHhcCCH
Q 001110 165 ESSKTALDKGKLEDAVTYGTKALAK----------LVAV----------------CGPYHRMTAGAYSLLAVVLYHTGDF 218 (1155)
Q Consensus 165 ~lG~~yl~~GdyeeAle~~~eALel----------~e~i----------------~G~d~p~~A~al~nLG~vy~~~Gdy 218 (1155)
..|.+.+.+.+|++|+..|++..+- +..+ ...-+.....+...+|..|...++.
T Consensus 267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence 3466777888999999998887643 0000 0000112223344567777788899
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001110 219 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 298 (1155)
Q Consensus 219 deAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~ 298 (1155)
++|+.+|++||.+ .|....++..+|.-|..+.+...|++.|++|+++ +|..-++|+.||.+|.-
T Consensus 347 EKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 347 EKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEI 410 (559)
T ss_pred HHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHH
Confidence 9999999999998 5677889999999999999999999999999997 56668899999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 001110 299 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 378 (1155)
Q Consensus 299 lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~ 378 (1155)
++-..=|+-||++|+.+. |.....|..||.+|.++++.++|+.+|++|+.. |+. ...++..|+.
T Consensus 411 m~Mh~YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~dt---e~~~l~~Lak 474 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----GDT---EGSALVRLAK 474 (559)
T ss_pred hcchHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----ccc---chHHHHHHHH
Confidence 999999999999999875 445578889999999999999999999999965 332 2344555555
Q ss_pred HHHHhHHHHHHHHhcCCCCchh-hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001110 379 FESKAFEQQEAARNGTRKPDAS-IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 439 (1155)
Q Consensus 379 l~qk~~e~AeAi~~~~~~~~~~-~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL 439 (1155)
+..+..+..++........... ..+........+...|+..+.+.++|++|..|..+++.-
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 5554444433332211111111 111112234556667999999999999999988777654
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=5.8e-11 Score=124.45 Aligned_cols=167 Identities=17% Similarity=0.134 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...+..+|.++...|++++|+.+|++++++ .+....++.++|.+|..+|++++|+.++++++... .
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~ 130 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------L 130 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------c
Confidence 466778899999999999999999999987 34455789999999999999999999999998742 2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
.+.....+.++|.++...|++++|..+|.+++.. .+....++..+|.++...|++++|+.++++++++.
T Consensus 131 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 199 (234)
T TIGR02521 131 YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--------DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY--- 199 (234)
T ss_pred cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 3445667889999999999999999999999885 23335678899999999999999999999998872
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
+. ....+..++.++...|+.++|..+.+.+..
T Consensus 200 --~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 200 --NQ---TAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred --CC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 22 234456788999999999999988776543
No 39
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=4.2e-10 Score=145.11 Aligned_cols=273 Identities=13% Similarity=0.004 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+.....++..+...|++++|..+++++++.... ........++..+|.++...|++++|..++++++...+.. | +
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g-~ 526 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-D-V 526 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-c-c
Confidence 344455678888999999999999999875211 1122245677889999999999999999999999988763 2 2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
......++.++|.+++.+|++++|..++++++.+.....+...+....++..+|.++...|++++|..++.+++.+....
T Consensus 527 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 527 YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 23445678899999999999999999999999998876544445455667789999999999999999999999987643
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHH--------------------------
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAA-------------------------- 373 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al-------------------------- 373 (1155)
. ......++..+|.++...|++++|..++.++..+.... + .+.......
T Consensus 607 ~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 681 (903)
T PRK04841 607 Q---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG-R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK 681 (903)
T ss_pred C---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC
Confidence 2 22345677889999999999999999999998875442 1 111100000
Q ss_pred -------------HHHHH--HHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001110 374 -------------AWLEY--FESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 438 (1155)
Q Consensus 374 -------------~~La~--l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALe 438 (1155)
..++. ...+.++.+....... ...............++..+|.+|..+|++++|..++.+|++
T Consensus 682 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~a--l~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 682 PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEEL--NENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00111 1111111111111100 011111112224556778889999999999999999999999
Q ss_pred Hhhhhc
Q 001110 439 VKGNFY 444 (1155)
Q Consensus 439 L~~kl~ 444 (1155)
+....+
T Consensus 760 la~~~g 765 (903)
T PRK04841 760 LANRTG 765 (903)
T ss_pred HhCccc
Confidence 886654
No 40
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.27 E-value=4.7e-10 Score=121.83 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=142.6
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
....+..++.+|..++..|++++|+..|++++... ++++....+++.+|.+|+.+|++++|+..|++++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---- 99 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL---- 99 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----
Confidence 45668899999999999999999999999998863 445566678999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHC--------CChHHHHHHHHHHHHHHHHhcCCCcHHHHHH--------------HHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGL--------GNVHVALRYLHKALKCNQRLLGPDHIQTAAS--------------YHAIA 335 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~l--------G~~deAle~lekALei~ek~lG~dhp~~a~a--------------~~nLA 335 (1155)
.++++....+++.+|.++... |++++|+..|+++++.. +++.....+ ...+|
T Consensus 100 -~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 100 -HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred -CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777899999999886 88999999999998764 333322222 23567
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHH
Q 001110 336 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDY 415 (1155)
Q Consensus 336 ~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~ 415 (1155)
.+|..+|++.+|+..++++++.+ ++ .+...+++..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~-----p~----------------------------------------~~~~~~a~~~ 208 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENY-----PD----------------------------------------TPATEEALAR 208 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHC-----CC----------------------------------------CcchHHHHHH
Confidence 77777777777777777666442 11 1234567889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHH
Q 001110 416 INPSHDTKGRNVSTLKRKTYVAKV 439 (1155)
Q Consensus 416 Lg~~y~~qGdyeeAle~yeKALeL 439 (1155)
+|.+|..+|++++|..+++....-
T Consensus 209 l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 209 LVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999988766543
No 41
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=5.5e-11 Score=131.34 Aligned_cols=235 Identities=16% Similarity=0.116 Sum_probs=186.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 001110 164 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 243 (1155)
Q Consensus 164 l~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~ 243 (1155)
-++|++|+..|-+.+|...++.+|+-. ....++..|+.+|....+...|+..|.+.++. .|..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---------~~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~ 289 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFD 289 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCch
Confidence 457999999999999999999998752 23457889999999999999999999988875 4667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCC
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 323 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~d 323 (1155)
...+..+|.++..++++++|+++|+.+++. |+...++...+|.-|+.-++.+-|+.||++.|.+- ..
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~~ 356 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----AQ 356 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-----CC
Confidence 788889999999999999999999999985 56667777788999999999999999999998863 33
Q ss_pred cHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--HhHHHHHHHHhcCCCCchhh
Q 001110 324 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGTRKPDASI 401 (1155)
Q Consensus 324 hp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~q--k~~e~AeAi~~~~~~~~~~~ 401 (1155)
....+.|+|.+++..++|+-++..|++|+.... ......+.+.+|++..- +++..+........
T Consensus 357 ---speLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL------ 422 (478)
T KOG1129|consen 357 ---SPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL------ 422 (478)
T ss_pred ---ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHh------
Confidence 346789999999999999999999999997753 23344555555554322 22222222211111
Q ss_pred hhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 402 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 402 a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
.+.....+.|++||.+....|+.++|..+|..|-.+.+..+
T Consensus 423 --~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 423 --TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred --ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 12335678899999999999999999999998888776655
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.5e-09 Score=125.48 Aligned_cols=198 Identities=18% Similarity=0.129 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
.|..+|.+|.++.+-++....|.+|.++ +|....+|+..|.+++.+++|++|+.-|++|+.+ +|
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~p 425 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DP 425 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------Ch
Confidence 3788899999999999999999999988 6778889999999999999999999999999998 57
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
..+.+|..++.+.+++++++++...|+.+..- -|....+|...|.++..+++|++|++.|.+|+++-....+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 88899999999999999999999999999874 3556778889999999999999999999999998643211
Q ss_pred CCcHHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 001110 322 PDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNG 393 (1155)
Q Consensus 322 ~dhp~~a~a~~nLA~iy~-~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~ 393 (1155)
- + ..+..+.+-|.+.. -.+++..|+.++.+|+++ +|+.-.+...|+.+..+..+..+++...
T Consensus 498 ~-~-v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 498 I-I-VNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred c-c-ccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1 0 01122222232222 238999999999999865 5666667777887777777777666543
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.23 E-value=1.9e-09 Score=137.33 Aligned_cols=248 Identities=14% Similarity=0.012 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..+..+|..+...|++++|+.+|++++++ .|....++..+|.++...|++++|+.++++++..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~------- 112 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG------- 112 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 3566788899999999999999999999987 4666778889999999999999999999999986
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHH-------
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK------- 311 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lek------- 311 (1155)
.|.... +..+|.++...|++++|+..|++++.+ +|....++..+|.++...+..++|+..+++
T Consensus 113 -~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 113 -APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE 182 (765)
T ss_pred -CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence 355556 889999999999999999999999986 455566677788898888888877766653
Q ss_pred --------------------------------HHHHHHHhcC------CCcHHHHHHHHH-HHHHHHHcCChhHHHHHHH
Q 001110 312 --------------------------------ALKCNQRLLG------PDHIQTAASYHA-IAIALSLMEAYPLSVQHEQ 352 (1155)
Q Consensus 312 --------------------------------ALei~ek~lG------~dhp~~a~a~~n-LA~iy~~lGdyeeAle~lk 352 (1155)
|++.++.... ...+....++.. ++. +...|++++|+..|+
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~-Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA-LLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH-HHHhhhHHHHHHHHH
Confidence 2222222211 011222223222 343 356688888888888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHH
Q 001110 353 TTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKR 432 (1155)
Q Consensus 353 kALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~ 432 (1155)
++++. ++..+..........++..+..+.+............. ......+.+..++.++..+|++++|+.+
T Consensus 262 ~ll~~-----~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~----~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 262 RLKAE-----GQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPET----IADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred Hhhcc-----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC----CCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 76643 22223322222233455555555555443322111100 0001123455566677888999999999
Q ss_pred HHHHHHHhh
Q 001110 433 KTYVAKVKG 441 (1155)
Q Consensus 433 yeKALeL~~ 441 (1155)
++++....+
T Consensus 333 l~~~~~~~P 341 (765)
T PRK10049 333 TAHTINNSP 341 (765)
T ss_pred HHHHhhcCC
Confidence 988887654
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.4e-09 Score=133.69 Aligned_cols=251 Identities=14% Similarity=0.087 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...+..++..++..|+|..+..+...|+.... ..+..+..++++|.+|..+|+|++|..||.+++...
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~------- 337 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD------- 337 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-------
Confidence 44566778888899999999999888887642 245677889999999999999999999999998752
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC----ChHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG----NVHVALRYLHKALKC 315 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG----~~deAle~lekALei 315 (1155)
.......+..||.+|...|+++.|..+|++.+.. .|....++.-||.+|...+ ..+.|..++.++++.
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 2224567888999999999999999999988775 2334455555666666554 344555555555543
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCC
Q 001110 316 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 395 (1155)
Q Consensus 316 ~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~ 395 (1155)
. +....+|..||.+|....-+. ++.+|.+|+.++.....+--+..+.....+. +..+.+..+........
T Consensus 410 ~--------~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh-f~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 410 T--------PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLH-FRLGNIEKALEHFKSAL 479 (1018)
T ss_pred c--------cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH-HHhcChHHHHHHHHHHh
Confidence 2 334556666666665443333 3666666666666554443333332222222 22222222221111100
Q ss_pred C-----CchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 001110 396 K-----PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 396 ~-----~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
. .+.... ......+.++++.+++..++++.|-+.|...++.++..
T Consensus 480 ~~~~~~~n~de~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 480 GKLLEVANKDEG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred hhhhhhcCcccc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 0 000000 01113345566666666666666666666666555443
No 45
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=3.2e-10 Score=133.52 Aligned_cols=215 Identities=14% Similarity=0.125 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
.-|..|..+++.|++.+|.-+|+.|+.. +|..+.+|..||.++...++-..|+..+++|+++ +|
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP 350 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DP 350 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CC
Confidence 3567788999999999999999999865 7999999999999999999999999999999997 67
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HH------hcCC----C------------------Ch--hHH
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLL-----HL------TCGP----S------------------HP--NTA 286 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~-----e~------l~G~----d------------------hp--~~a 286 (1155)
....++..||..|...|.-.+|++++.+-|... .. .++. . ++ ...
T Consensus 351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP 430 (579)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence 888999999999999999999999998876531 00 0000 0 11 123
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCC
Q 001110 287 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 366 (1155)
Q Consensus 287 ~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh 366 (1155)
+++..||.+|...|+|++|+.+|+.||... |.....|..||-.+..-.+.++|+..|++|+++. |
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~--------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-----P-- 495 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVK--------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-----P-- 495 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcC--------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-----C--
Confidence 456667777777777777777777777643 5556677777777777777777777777777652 1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhcCC
Q 001110 367 LRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQD 446 (1155)
Q Consensus 367 ~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~~e 446 (1155)
....+.++||..|..+|.|++|.++|-.||.+..+..+.
T Consensus 496 -----------------------------------------~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 496 -----------------------------------------GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred -----------------------------------------CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccccc
Confidence 222346788999999999999999999999999986643
Q ss_pred CC
Q 001110 447 NN 448 (1155)
Q Consensus 447 ~~ 448 (1155)
..
T Consensus 535 ~~ 536 (579)
T KOG1125|consen 535 NK 536 (579)
T ss_pred cc
Confidence 33
No 46
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.22 E-value=6.4e-09 Score=116.60 Aligned_cols=272 Identities=14% Similarity=0.055 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~-p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
..+++++++.+....+|.+++.|.+-.+.+- |... ..-..++..||..+.-++.|++++++|++|+.++..+ .
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~ 156 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--D 156 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--C
Confidence 4567777888877788888888887777652 1111 2223566779999999999999999999999998664 3
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCC-hhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC-GPSH-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~-G~dh-p~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
|......++..||.+|..+.++++|+-+..+|+++..... +.-+ -....+++.++..|..+|.+-+|.++.++|.++.
T Consensus 157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4445568899999999999999999999999999987643 2212 2356788999999999999999999999999998
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhH-----HHHHHHH
Q 001110 317 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF-----EQQEAAR 391 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~-----e~AeAi~ 391 (1155)
... .+....+.++..+|.+|...|+.+.|..-|++|+.+.... |.. .....++...+....... .-.+++.
T Consensus 237 l~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdr-mgqv~al~g~Akc~~~~r~~~k~~~Crale 312 (518)
T KOG1941|consen 237 LQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDR-MGQVEALDGAAKCLETLRLQNKICNCRALE 312 (518)
T ss_pred HHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhh-HHHHHHHHHHHHHHHHHHHhhcccccchhH
Confidence 665 5667788999999999999999999999999999987665 222 122222222221111000 0011222
Q ss_pred hcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 392 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 392 ~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
......+....-.....+..+...++.+|+.+|.-++=...+.++-+...
T Consensus 313 ~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~ 362 (518)
T KOG1941|consen 313 FNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVE 362 (518)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 22222222222333456778899999999999998887777766555443
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.21 E-value=3.2e-09 Score=135.15 Aligned_cols=156 Identities=19% Similarity=0.135 Sum_probs=130.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 001110 164 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 243 (1155)
Q Consensus 164 l~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~ 243 (1155)
.....+....|++++|+..+.++..+ .+..+.++..+|.++...|++++|+.+|++++.+ .|..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~ 82 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQN 82 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Confidence 33445667899999999999888764 4566778999999999999999999999999987 3555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCC
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 323 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~d 323 (1155)
..++..+|.++...|++++|+.++++++.. +|.... +..+|.++...|++++|+..|++++++.
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~------- 146 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA------- 146 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------
Confidence 667889999999999999999999999885 344455 8899999999999999999999999975
Q ss_pred cHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 001110 324 HIQTAASYHAIAIALSLMEAYPLSVQHEQ 352 (1155)
Q Consensus 324 hp~~a~a~~nLA~iy~~lGdyeeAle~lk 352 (1155)
|....++..+|.++...++.++|+..++
T Consensus 147 -P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 147 -PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred -CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 3344556678888888888887776665
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=9.7e-10 Score=125.02 Aligned_cols=234 Identities=15% Similarity=0.161 Sum_probs=177.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G--dydeAle~~eKALei~er~lG~D~ 240 (1155)
-+..+..++..|+++.|++.++- +++ .++.....+.++|..+++.+| ++.+|..|...|+.+ +
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv----~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------d 486 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKV----FEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------D 486 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHH----HHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------c
Confidence 34457788999999999986542 222 234444556788888888754 788999999999886 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
...+.++.|-|.+.+..|++++|.++|++||. ++.....+++|+|..+..+|++++|+++|.+.-.+.
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il---- 554 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL---- 554 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH----
Confidence 34567888999999999999999999999986 456678899999999999999999999999988877
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchh
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 400 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~ 400 (1155)
...+.+++.+|.+|..+.+-.+|+++|-++..+ -+.+|..+. .|+.++.+.++..+++...-..
T Consensus 555 ----~nn~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~ils---kl~dlydqegdksqafq~~yds---- 618 (840)
T KOG2003|consen 555 ----LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAILS---KLADLYDQEGDKSQAFQCHYDS---- 618 (840)
T ss_pred ----HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHHH---HHHHHhhcccchhhhhhhhhhc----
Confidence 346788999999999999999999999888754 377776544 4455555555555554322111
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 401 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 401 ~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
...-+.-.++...||..|....=.++|+.||++|.-+.+
T Consensus 619 --yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 619 --YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred --ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 112234556777888888888888999999999865433
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.4e-10 Score=132.81 Aligned_cols=194 Identities=19% Similarity=0.213 Sum_probs=162.1
Q ss_pred hhhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001110 149 VHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 228 (1155)
Q Consensus 149 i~K~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKA 228 (1155)
+.|........+..++..|..+...|..++|+..|..|-++.... -.-+..+|.-|..++.+..|..+|.+|
T Consensus 335 ~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~--------hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 335 FSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC--------HLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred HHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC--------cchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 345556666678888889999999999999999999999885322 224567899999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHH
Q 001110 229 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 308 (1155)
Q Consensus 229 Lei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~ 308 (1155)
+.++ |.....+..+|.+.+..+.|.+|+.+|+.++...+... ...+.+.-++.|||.+|.+++++++|+.+
T Consensus 407 ~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 407 LAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9984 55567889999999999999999999999997766643 33446777899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 001110 309 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 372 (1155)
Q Consensus 309 lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~a 372 (1155)
|++||.+. +..+.++..+|.+|..+|+++.|+++|.+||.+ .+++......
T Consensus 478 ~q~aL~l~--------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l-----~p~n~~~~~l 528 (611)
T KOG1173|consen 478 YQKALLLS--------PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL-----KPDNIFISEL 528 (611)
T ss_pred HHHHHHcC--------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc-----CCccHHHHHH
Confidence 99999876 456788899999999999999999999999976 4565444333
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.18 E-value=3.8e-11 Score=134.22 Aligned_cols=235 Identities=20% Similarity=0.228 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~ 242 (1155)
.+.+|.+++..|++++|++.+.+.+... ..+.....|..+|.+...+++++.|+..|++.+..- +.
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~ 76 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------cc
Confidence 3466889999999999999997765442 124445678889999999999999999999998762 22
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCC
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 322 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~ 322 (1155)
....+..++.+ ...+++++|+++++++.+.. .+ ...+..+..++...++++++..+++++....
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~---~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------ 140 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERD------GD---PRYLLSALQLYYRLGDYDEAEELLEKLEELP------ 140 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T------
T ss_pred ccccccccccc-cccccccccccccccccccc------cc---cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc------
Confidence 34456677777 68999999999998876532 12 2334556678899999999999999877421
Q ss_pred CcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHH-HHHHhcCCCCchhh
Q 001110 323 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQ-EAARNGTRKPDASI 401 (1155)
Q Consensus 323 dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~A-eAi~~~~~~~~~~~ 401 (1155)
........+..+|.++.+.|+.++|+..|++|++. .|+++.....+.|+.. ..+....+ +.+.......
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~---- 210 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAA---- 210 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-----
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC----
Confidence 22345677889999999999999999999999977 5777877766665532 22222221 1221111100
Q ss_pred hhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 402 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 402 a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
... ..++..+|.+|..+|++++|+.+|+++++..+.
T Consensus 211 --~~~---~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 211 --PDD---PDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp --HTS---CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred --cCH---HHHHHHHHHHhcccccccccccccccccccccc
Confidence 111 125677899999999999999999999987664
No 51
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.17 E-value=3.2e-09 Score=121.82 Aligned_cols=171 Identities=18% Similarity=0.140 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
....+..+..++..|++++|+.+++++++. +|....++.. +..+...|++..+...+.+++.. ....
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~ 109 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPE 109 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcC
Confidence 444556788888999999999999999876 3444445544 66666666666665555555543 2345
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
++.....+..+|.++..+|++++|+..+++++.+ .|....++..+|.+|...|++++|+.++++++.....
T Consensus 110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~- 180 (355)
T cd05804 110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC- 180 (355)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-
Confidence 6777778888899999999999999999998885 2333567788899999999999999999988876521
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
........+..+|.++..+|++++|+.+|++++
T Consensus 181 ---~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 181 ---SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred ---CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 112234567788889999999999999888875
No 52
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.17 E-value=9.3e-10 Score=124.04 Aligned_cols=225 Identities=14% Similarity=0.092 Sum_probs=153.6
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 200 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 279 (1155)
Q Consensus 200 ~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G 279 (1155)
..+..|...|.+|...+++++|.+.|.+|..+..+. .+....+..|.+.+.+|... ++++|+++|++|+.++...
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-- 107 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-- 107 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--
Confidence 446667777889999999999999999999998873 44556788888988888777 9999999999999998774
Q ss_pred CCChhHHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 280 PSHPNTAATYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 280 ~dhp~~a~a~~nLA~iy~~l-G~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
......+.++.++|.+|... |++++|+++|++|+++++.. ........++..+|.++..+|+|++|++.|++.....
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 23445688999999999999 99999999999999999765 2445567889999999999999999999999877643
Q ss_pred HHHcCCCCHHHH--HHHHHHHHHHHHhHHHHHH-HHhcC-CCCchhhhhcCCCcHHHHHHHHHHHHH--HcCChHHHHHH
Q 001110 359 RAKLGPDDLRTQ--DAAAWLEYFESKAFEQQEA-ARNGT-RKPDASIASKGHLSVSDLLDYINPSHD--TKGRNVSTLKR 432 (1155)
Q Consensus 359 kk~lG~dh~~t~--~al~~La~l~qk~~e~AeA-i~~~~-~~~~~~~a~~~~~svaelL~~Lg~~y~--~qGdyeeAle~ 432 (1155)
...-. ....+. .....|.++..++...++. +.... ..+.. ....-..++..|-.++. ....+.+|+.-
T Consensus 186 l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F-----~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 186 LENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF-----ASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp CCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS-----TTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred hcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----CCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 21111 112222 2233455665555444443 33222 21211 11233445555655653 35556667766
Q ss_pred HHHHH
Q 001110 433 KTYVA 437 (1155)
Q Consensus 433 yeKAL 437 (1155)
|.+..
T Consensus 260 ~d~~~ 264 (282)
T PF14938_consen 260 YDSIS 264 (282)
T ss_dssp HTTSS
T ss_pred HcccC
Confidence 65433
No 53
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.17 E-value=1.7e-09 Score=121.97 Aligned_cols=190 Identities=16% Similarity=0.064 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..+...|..|...+++++|...|.+|.++..+. .+....+.+|...|.+|... ++++|+.+|++|+.++... ++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~ 109 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GR 109 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--Cc
Confidence 4556667888999999999999999999998874 44556778888888888776 9999999999999999763 34
Q ss_pred ChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~l-G~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
....+.++.++|.+|... |++++|+++|++|+++++.. ........++.++|.++..+|+|++|+..|++.......
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 456688999999999999 99999999999999999873 233456778899999999999999999999998775422
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
.. ......-..++..+.++...||+..|...+++....
T Consensus 188 ~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 188 NN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred cc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 11 112334456678888999999999998877766543
No 54
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=7.5e-10 Score=130.48 Aligned_cols=188 Identities=16% Similarity=0.124 Sum_probs=160.5
Q ss_pred hhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001110 151 KQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 230 (1155)
Q Consensus 151 K~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALe 230 (1155)
..+.-.+..++++..+|.+....++-..|+..+++|+++ +|....++..||..|...|.-.+|+.++.+=|.
T Consensus 310 AAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~ 381 (579)
T KOG1125|consen 310 AAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIR 381 (579)
T ss_pred HHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 344556778999999999999999999999999999988 788899999999999999999999998887654
Q ss_pred HHHH-----------hcC----------------------CCCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001110 231 INER-----------ELG----------------------LDHP--DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 275 (1155)
Q Consensus 231 i~er-----------~lG----------------------~D~p--~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e 275 (1155)
..-+ ..+ ..++ ....++..||.+|+..|+|++|+.+|+.||..
T Consensus 382 ~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-- 459 (579)
T KOG1125|consen 382 NKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-- 459 (579)
T ss_pred hCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--
Confidence 3200 000 0011 23566788999999999999999999999984
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 276 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 276 ~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
.|....+|+.||-.+..-.+.++|+..|++||++. |...++++|||..|..+|.|++|..+|..||
T Consensus 460 ------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 460 ------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 67788999999999999999999999999999986 6778999999999999999999999999999
Q ss_pred HHHHHHc
Q 001110 356 QILRAKL 362 (1155)
Q Consensus 356 eI~kk~l 362 (1155)
.+.++..
T Consensus 526 ~mq~ks~ 532 (579)
T KOG1125|consen 526 SMQRKSR 532 (579)
T ss_pred Hhhhccc
Confidence 9987743
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=8.9e-09 Score=114.80 Aligned_cols=262 Identities=16% Similarity=0.045 Sum_probs=183.7
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001110 154 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 233 (1155)
Q Consensus 154 ~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e 233 (1155)
.....++...+++|..++..|+|.+|+..|..|++. +|....+++..|.+|+.+|+-.-|+.-+.+.|++
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-- 101 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-- 101 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence 344566778899999999999999999999999976 7888889999999999999999999999999887
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------------------Hhc-CCC-----
Q 001110 234 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH--------------------------LTC-GPS----- 281 (1155)
Q Consensus 234 r~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e--------------------------~l~-G~d----- 281 (1155)
.|+...+....|.+++++|++++|..-|++.|..-- ..+ +.+
T Consensus 102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 577888888999999999999999988887665210 000 011
Q ss_pred ---------ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 001110 282 ---------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 352 (1155)
Q Consensus 282 ---------hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lk 352 (1155)
.|..+..+..-|.+|...|+...|+.-++.|-++. .+....++.++.+++..|+.+.++...+
T Consensus 176 ~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 176 EMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 12223344455666666666666666666655543 2234667889999999999999999888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHH---------HHH------hcCCC-Cc------------------
Q 001110 353 TTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE---------AAR------NGTRK-PD------------------ 398 (1155)
Q Consensus 353 kALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~Ae---------Ai~------~~~~~-~~------------------ 398 (1155)
++|.+ .++|....-.+..|..+........+ .+. ..... ..
T Consensus 248 ECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 248 ECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 88854 78887665555544433221111111 111 10000 00
Q ss_pred --hh-----hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 399 --AS-----IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 399 --~~-----~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
.. ......++-.++|+..+.+|.....|+.|+.-|++|+++..+..
T Consensus 323 ~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 00 01223455678899999999999999999999999998876643
No 56
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.14 E-value=2.1e-08 Score=129.57 Aligned_cols=193 Identities=13% Similarity=-0.029 Sum_probs=150.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~-p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
....+..++..|++++|..++.++.+.......... .....+...+|.++...|++++|..++++++..... .+..
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~ 488 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYY 488 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHH
Confidence 455677778899999999999998776433210111 224556677899999999999999999999885221 1222
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
....++..+|.++...|++++|+.++++++.+.... +. ......++.++|.++..+|++++|..++++++++.....+
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~-~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DV-YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cc-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 345677889999999999999999999999987763 32 2234567889999999999999999999999999877644
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 322 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 322 ~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
...+....++..+|.++...|++++|..++++++.+...
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 444445556778899999999999999999999988764
No 57
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.14 E-value=2e-09 Score=120.61 Aligned_cols=272 Identities=13% Similarity=0.091 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
.....+.|..++...++++|+..+.+.|....... .....|-.+..+...+|.|.+++.+.--.+..+... .|
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~-----~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~d 78 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLM-----GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--ED 78 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHH-----HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HH
Confidence 34456677788889999999999999998865542 344567788889999999999998877777766553 34
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dh-p~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
......+|.+|+..+.+..++.+++.|..-.+.+- |... ..-......+|.++..++.|++++++|++|+++...
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~ 154 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHN 154 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 55677899999999999999999999888777642 2111 122345666899999999999999999999999865
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHc-CCCCHHHHH-HHHHHHHHHHHhHHHHHHHHhcCCC
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL-GPDDLRTQD-AAAWLEYFESKAFEQQEAARNGTRK 396 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~l-G~dh~~t~~-al~~La~l~qk~~e~AeAi~~~~~~ 396 (1155)
. .|.....+++..||.+|..+.|+++|+-+..+|+++....- +..+..... ++..++......+..-.+.......
T Consensus 155 ~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 155 N--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEA 232 (518)
T ss_pred c--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4 34444567899999999999999999999999999987653 333333221 2222322222222221222211222
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 397 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 397 ~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
........+....+..+.-+|.+|+.+|+.+.|...|++|+.+...++
T Consensus 233 ~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 233 MKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG 280 (518)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence 222233344445677889999999999999999999999999888776
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=3.8e-09 Score=117.38 Aligned_cols=243 Identities=13% Similarity=0.064 Sum_probs=183.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 001110 164 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 243 (1155)
Q Consensus 164 l~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~ 243 (1155)
|..|.-++-..+-++|+++|.+.++. ++.+..+...||.+|+..|+.+.|+.+.+..+.-- +......
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr 106 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQR 106 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHH
Confidence 34466677788899999999998874 67888999999999999999999999887765520 1112234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCC
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 323 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~d 323 (1155)
..++..||.-|+..|-+|.|+..|....+. ......++-.|..+|+...+|++|++.-++...+-.+ ..
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~ 175 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TY 175 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cc
Confidence 678899999999999999999999887653 1223457788999999999999999998877766432 33
Q ss_pred cHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhh
Q 001110 324 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 403 (1155)
Q Consensus 324 hp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~ 403 (1155)
...++..|..||..+....+++.|..++++|++. ++....+-..++.+....++.+++..... ....
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e-----~v~e 242 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALE-----RVLE 242 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHH-----HHHH
Confidence 5678999999999999999999999999999975 23333333344444444444444443211 1122
Q ss_pred cCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 404 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 404 ~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
.++.-+.+++..|..+|.++|+.++.+.++.++++....
T Consensus 243 Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 243 QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 334467889999999999999999999999998876654
No 59
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=1.1e-08 Score=117.35 Aligned_cols=211 Identities=17% Similarity=0.067 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|..+...|+.++|...+.++...... +..........|.+++..|++++|+.++++++..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~------- 72 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD------- 72 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 3566778888898999999998888888776432 2334556777899999999999999999999886
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
+|....++.. +..++.+|++..+...+.+++.. ..+.++.....+..+|.++..+|++++|+..+++++++.
T Consensus 73 -~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-- 144 (355)
T cd05804 73 -YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-- 144 (355)
T ss_pred -CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 3444445444 66777777766666666666553 345678888888999999999999999999999999975
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCc
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 398 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~ 398 (1155)
++ ...++..+|.+|...|++++|+.++++++..... ++.
T Consensus 145 ---p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~------------------------------ 183 (355)
T cd05804 145 ---PD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSM------------------------------ 183 (355)
T ss_pred ---CC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----Ccc------------------------------
Confidence 22 3567888999999999999999999988764211 000
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001110 399 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 439 (1155)
Q Consensus 399 ~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL 439 (1155)
.....+..++.++..+|++++|+.+|++++..
T Consensus 184 ---------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 184 ---------LRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred ---------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 11234567788889999999999999888543
No 60
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.06 E-value=4.4e-08 Score=120.37 Aligned_cols=171 Identities=17% Similarity=0.193 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
...+.++..|...+..|++++|+.++.+++.. .|....+|+.||.+|..+|+.++|+.....|-.+
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------ 202 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------ 202 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc------
Confidence 34678899999999999999999999999987 6778889999999999999999999998888765
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.|.....|..++.....+|++++|.-||.+|+.. .|.....++.-+.+|.+.|++..|...|.+++.+.-
T Consensus 203 --~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 203 --NPKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred --CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 2333467888999999999999999999999986 345567788899999999999999999999888752
Q ss_pred HhcCCCc-HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 318 RLLGPDH-IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 318 k~lG~dh-p~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
+.. ..........+..+...++-+.|++.+..++.
T Consensus 273 ----~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 273 ----PVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred ----chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 111 12233344556777777777778887777776
No 61
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.05 E-value=8.3e-10 Score=99.72 Aligned_cols=78 Identities=37% Similarity=0.533 Sum_probs=71.5
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
||+++.+|.++|.+|..+|+|++|+.+|++++.+ ....|.+++.++.++.++|.+|..+|++++|+.+|++|+++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6788999999999999999999999999999999 66678888899999999999999999999999999999998753
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=8.7e-10 Score=122.05 Aligned_cols=198 Identities=16% Similarity=0.154 Sum_probs=156.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
....+.++.++++|....+...|+..|.+.++. .|.....+..+|++|..++++++|+++|+.+++.
T Consensus 253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~----- 319 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL----- 319 (478)
T ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-----
Confidence 344667888899999999999999999988876 4666777888999999999999999999999886
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
++....+...+|.-|+.-++.+.|+.||++.|.+ |-.. ...++|+|.+....+++|-++..|++|+...
T Consensus 320 ---~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 320 ---HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred ---CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 4555666777888899999999999999999986 4333 4568999999999999999999999999887
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh--HHHHHHHH
Q 001110 317 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA--FEQQEAAR 391 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~--~e~AeAi~ 391 (1155)
. +....+.+|+|||.+....||+..|..+|+-|+.- +.+| ..++.+|+.+..+. .+.++++.
T Consensus 389 t-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-----d~~h---~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 389 T-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-----DAQH---GEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred c-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhcc-----Ccch---HHHHHhHHHHHhhcCchHHHHHHH
Confidence 3 34567889999999999999999999988877732 3444 45556666554433 34444443
No 63
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.05 E-value=9.9e-10 Score=99.23 Aligned_cols=78 Identities=32% Similarity=0.454 Sum_probs=72.2
Q ss_pred ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 282 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 282 hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
||.++.++.++|.+|..+|+|++|+.+|++|+++ .+.+|.+++.++.++.++|.+|..+|++++|++++++|++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 7889999999999999999999999999999999 67778888899999999999999999999999999999999864
No 64
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.03 E-value=1.6e-09 Score=121.30 Aligned_cols=169 Identities=26% Similarity=0.241 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...+.....++...++++++..++.++... ...+.....|..+|.++...|+.++|+.+|++|+.+
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-------- 175 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-------- 175 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--------
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------
Confidence 344555666788899999999999987743 223456778999999999999999999999999998
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
.|+...+...++.++...|+++++.+.+....... +.++ ..+..+|.+|..+|++++|+.+|+++++..
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--- 244 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDP---DLWDALAAAYLQLGRYEEALEYLEKALKLN--- 244 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS---
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHH---HHHHHHHHHhcccccccccccccccccccc---
Confidence 35566778889999999999999888777766543 1233 346678999999999999999999998764
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
+.....+..+|.++...|++++|..++++++...
T Consensus 245 -----p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 245 -----PDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp -----TT-HHHHHHHHHHHT-------------------
T ss_pred -----cccccccccccccccccccccccccccccccccc
Confidence 3445677789999999999999999999988654
No 65
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.00 E-value=4.4e-09 Score=107.11 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Q 001110 180 VTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 259 (1155)
Q Consensus 180 le~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~ 259 (1155)
..+|++++++ +|.. +..+|.++...|++++|+.+|++++.+ .|....++.++|.++..+|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4567788776 4443 567899999999999999999999886 56778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 260 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 260 yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+++|+.+|++++.+ .|....+++++|.++..+|++++|+..|++|+++.
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999985 46668889999999999999999999999999875
No 66
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=1.1e-08 Score=128.02 Aligned_cols=162 Identities=13% Similarity=-0.006 Sum_probs=141.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 001110 168 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 247 (1155)
Q Consensus 168 ~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay 247 (1155)
.+.-..+....+...+-+++.+.+. .+....++.+||.+...+|.+++|+.+++.++++ .|+...+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~ 123 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAF 123 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHH
Confidence 3444556677777777777777654 4667889999999999999999999999999998 47778999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001110 248 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 327 (1155)
Q Consensus 248 ~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~ 327 (1155)
.++|.++.+++++++|+..+++++.. .|+.+.+++.+|.++.++|++++|+.+|++++.. ++..
T Consensus 124 ~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~ 187 (694)
T PRK15179 124 ILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEF 187 (694)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCc
Confidence 99999999999999999999999985 5777889999999999999999999999999972 3456
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 328 AASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 328 a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
..++..+|.++..+|+.++|...|++|++.+
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999874
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.98 E-value=9.7e-08 Score=113.19 Aligned_cols=247 Identities=12% Similarity=-0.030 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+...+..|...+..|+++.|.+.+.++.+. .+.....+...|.++..+|+++.|..++.++.+.. +
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p 149 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----G 149 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C
Confidence 3556677788888888888888888777654 23334456677888888888888888888886542 1
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC--- 315 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei--- 315 (1155)
+.. ..+....+.++...|++++|+..+++.++. +|....++..++.+|...|++++|++++.+.++.
T Consensus 150 ~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 150 NDN--ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred cCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 111 123344588888888888888888887764 2333456777888888888888888877766632
Q ss_pred ----H--------H----------------Hhc---CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCC
Q 001110 316 ----N--------Q----------------RLL---GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 364 (1155)
Q Consensus 316 ----~--------e----------------k~l---G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~ 364 (1155)
. . ... ..........+..+|..+...|++++|...++++++.. +
T Consensus 220 ~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----p 294 (409)
T TIGR00540 220 DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----G 294 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----C
Confidence 0 0 000 00011245667788999999999999999999998752 3
Q ss_pred CCHHHH-HHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHH--HHHHHHHHHHHHcCChHHHHHHHHH--HHHH
Q 001110 365 DDLRTQ-DAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS--DLLDYINPSHDTKGRNVSTLKRKTY--VAKV 439 (1155)
Q Consensus 365 dh~~t~-~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~sva--elL~~Lg~~y~~qGdyeeAle~yeK--ALeL 439 (1155)
++.... ..+..+..+.......+....+. ..+.++.-. .++..+|.++..+|++++|.++|++ +++.
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~--------~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEK--------QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHH--------HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 333211 11111122221111112111111 111222333 6788899999999999999999994 5544
Q ss_pred hh
Q 001110 440 KG 441 (1155)
Q Consensus 440 ~~ 441 (1155)
.+
T Consensus 367 ~p 368 (409)
T TIGR00540 367 QL 368 (409)
T ss_pred CC
Confidence 33
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.96 E-value=9.1e-08 Score=113.11 Aligned_cols=244 Identities=15% Similarity=0.029 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+...+..|...+..|+|++|++.+.++-+. .++| ...+...+.+...+|+++.|..++++|.+..
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~------ 148 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAELA------ 148 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence 4666778888888899999999766664432 1122 2223344666689999999999999997642
Q ss_pred CChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH-
Q 001110 239 DHPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN- 316 (1155)
Q Consensus 239 D~p~~-a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~- 316 (1155)
++. .......+.++...|++++|+..+++.++. .|....++..++.+|...|++++|+..+.+..+..
T Consensus 149 --~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 149 --DNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred --CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 221 122234488999999999999999988774 34445667778999999999999997776555311
Q ss_pred ------------------HHh---------------cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcC
Q 001110 317 ------------------QRL---------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 363 (1155)
Q Consensus 317 ------------------ek~---------------lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG 363 (1155)
... +....+....+...+|..+...|+.++|...++++++.
T Consensus 219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------ 292 (398)
T PRK10747 219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR------ 292 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence 000 00111223446677899999999999999999888752
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 001110 364 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 364 ~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
+.|+.....+..+ ..+..+.+....+. ..+.++.-.+++..+|.++...|++++|.++|++++++.+..
T Consensus 293 ~~~~~l~~l~~~l---~~~~~~~al~~~e~--------~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 293 QYDERLVLLIPRL---KTNNPEQLEKVLRQ--------QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred CCCHHHHHHHhhc---cCCChHHHHHHHHH--------HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 3455433333322 11222222211110 112233455678888999999999999999999988875543
No 69
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.7e-08 Score=113.63 Aligned_cols=176 Identities=19% Similarity=0.177 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
+......+..+.++...|++++|...-...+++ ++..+.+++..|.+++..++.+.|+.+|+++|.+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l----- 232 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL----- 232 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-----
Confidence 334455566678888999999999877666665 5677889999999999999999999999999987
Q ss_pred CCCChhh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHCCChHHHH
Q 001110 237 GLDHPDT---------MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-PNTAATYINVAMMEEGLGNVHVAL 306 (1155)
Q Consensus 237 G~D~p~~---------a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dh-p~~a~a~~nLA~iy~~lG~~deAl 306 (1155)
+++|... ......-|.-.++.|+|.+|.++|..||.+ .+++ ...+.+|.|.|.+...+|+..+|+
T Consensus 233 dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eai 307 (486)
T KOG0550|consen 233 DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAI 307 (486)
T ss_pred ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhh
Confidence 4444443 344456688889999999999999999987 2333 346888999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 307 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 307 e~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
.-.+.|+.|- +....+|..-|.++..+++|++|++.|++|++.-
T Consensus 308 sdc~~Al~iD--------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 308 SDCNEALKID--------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhhhhhhhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999885 5567889999999999999999999999999874
No 70
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.95 E-value=2e-07 Score=110.44 Aligned_cols=250 Identities=12% Similarity=-0.009 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~-A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
...++-.|+.+..+|+++.|..++.++.+.. +.. ..+...++.++...|++++|+..+++.++.
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--------p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~------- 182 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELA--------GNDNILVEIARTRILLAQNELHAARHGVDKLLEM------- 182 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 4456667888899999999999999987652 222 123444689999999999999999888876
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhc---------------CCCCh----h
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL---------------LHLTC---------------GPSHP----N 284 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei---------------~e~l~---------------G~dhp----~ 284 (1155)
.|+...++..++.+|...|++++|++++.+.++. ....+ -...| .
T Consensus 183 -~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~ 261 (409)
T TIGR00540 183 -APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRH 261 (409)
T ss_pred -CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhC
Confidence 3555577888999999999999988877766632 00000 00122 2
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCC
Q 001110 285 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 364 (1155)
Q Consensus 285 ~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~ 364 (1155)
....+..+|..+...|++++|+..++++++.. ++....... ......+...++...+++.++++++. .+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p 330 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN-----VD 330 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh-----CC
Confidence 45677888999999999999999999999864 333221101 11222333457788888888877754 57
Q ss_pred CCH--HHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 365 DDL--RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 365 dh~--~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
+++ ....++.|+.+ ..+.+..++...+...... ..++.. .+..+|.++.++|+.++|.++|++++...-.
T Consensus 331 ~~~~~~ll~sLg~l~~-~~~~~~~A~~~le~a~a~~------~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 331 DKPKCCINRALGQLLM-KHGEFIEAADAFKNVAACK------EQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLGLMLA 402 (409)
T ss_pred CChhHHHHHHHHHHHH-HcccHHHHHHHHHHhHHhh------cCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 788 77778888874 3444454444433101100 011222 3558999999999999999999999887655
Q ss_pred hc
Q 001110 443 FY 444 (1155)
Q Consensus 443 l~ 444 (1155)
+.
T Consensus 403 ~~ 404 (409)
T TIGR00540 403 IQ 404 (409)
T ss_pred cc
Confidence 44
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.6e-08 Score=117.04 Aligned_cols=181 Identities=19% Similarity=0.187 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+...-.+|...+...+|..|++.|..++++. .....+++.|.+|+.+|.+.+.+..+.++++.-.... .
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-a 292 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-A 292 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-H
Confidence 46677888999999999999999999999984 3345678999999999999999999999887643321 1
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hcC----------------CCChhHHHHHHHHHHHHHHCC
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL--TCG----------------PSHPNTAATYINVAMMEEGLG 300 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~--l~G----------------~dhp~~a~a~~nLA~iy~~lG 300 (1155)
+...++.++..+|..|..+++|+.|+.+|++++.-.+. ... --.|..+.-...-|..++..|
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 22335667777889999999999999999998875432 000 012333333444566666666
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 301 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 301 ~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+|..|+.+|.+|++.. |..+..|.|.|.+|..+|++..|+.-.++++++
T Consensus 373 dy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred CHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 6666666666665532 445566666666666666666666666655544
No 72
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.92 E-value=1.4e-08 Score=105.32 Aligned_cols=131 Identities=15% Similarity=0.062 Sum_probs=105.6
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
...+.+++++|.++..+|++++|+.+|++++.+. +++.....++.++|.+|..+|++++|+.+|++|+.+....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~- 105 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL- 105 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 3457889999999999999999999999999873 3455567799999999999999999999999999874221
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 377 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La 377 (1155)
+..+...+.++.++|..+..+|++++|+.++++++.++++.++.++..+.....++.
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 122334455556666666699999999999999999999999988877666666654
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=1.9e-07 Score=104.14 Aligned_cols=173 Identities=13% Similarity=0.118 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
..+++++|+-|+..|-++.|+..|....+. ....-.++..|-.+|....++++|++..++...+-.+ ..
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~ 175 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TY 175 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cc
Confidence 557889999999999999999999988764 2233468899999999999999999998887776322 23
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
...++..|+.||..+....+.+.|...+.+|++. +|..+.+-+.+|.++...|+|+.|++.++.+++.
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---- 243 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---- 243 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh----
Confidence 4578899999999999999999999999999985 5566777888999999999999999999998875
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
++..+..+.-.|..+|.++|+.++.+.++.++.+..
T Consensus 244 ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 244 ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred ---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 445677888899999999999999999999998764
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=3.4e-08 Score=123.57 Aligned_cols=137 Identities=10% Similarity=0.016 Sum_probs=126.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
+..++..++.+|.+....|.+++|+.++..++++ .|+...++.++|.++.+++++++|+..+++++..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---- 149 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---- 149 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc----
Confidence 3445788999999999999999999999999998 5888899999999999999999999999999986
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 236 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
.|+.+.+++.+|.++..+|+|++|+.+|++++. .+|+...++.++|.++...|+.++|...|++|++.
T Consensus 150 ----~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 150 ----GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred ----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577889999999999999999999999999987 25677889999999999999999999999999998
Q ss_pred H
Q 001110 316 N 316 (1155)
Q Consensus 316 ~ 316 (1155)
.
T Consensus 218 ~ 218 (694)
T PRK15179 218 I 218 (694)
T ss_pred h
Confidence 6
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.90 E-value=3.4e-07 Score=111.17 Aligned_cols=259 Identities=17% Similarity=0.087 Sum_probs=183.3
Q ss_pred hhhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001110 149 VHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 228 (1155)
Q Consensus 149 i~K~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKA 228 (1155)
+.+.......+...+|.++..|..+++.+.|.++.++++++- ....+.+|+.||.++...+++.+|+....-|
T Consensus 467 le~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 334444455556889999999999999999999999999882 2345679999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc------------------------------
Q 001110 229 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC------------------------------ 278 (1155)
Q Consensus 229 Lei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~------------------------------ 278 (1155)
++-....++. ...-..+-...++.++|+..+...|.+|+..+
T Consensus 540 l~E~~~N~~l--------~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 540 LEEFGDNHVL--------MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHhhhhhhh--------chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 8875442211 11112222335555556555555555555100
Q ss_pred -----------------------------CCCChh--HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001110 279 -----------------------------GPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 327 (1155)
Q Consensus 279 -----------------------------G~dhp~--~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~ 327 (1155)
+++++. ....+...|..+...++.++|..++.+|-.+. +..
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~ 683 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLS 683 (799)
T ss_pred hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhh
Confidence 111111 12345567888888999999999999988775 567
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHH--HHhcCCCCchhhhhcC
Q 001110 328 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA--ARNGTRKPDASIASKG 405 (1155)
Q Consensus 328 a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeA--i~~~~~~~~~~~a~~~ 405 (1155)
+..|+..|.++..+|++.+|.+.|..|+.+ +++|.....++..+..- .+....++. +.... -+-
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-----dP~hv~s~~Ala~~lle-~G~~~la~~~~~L~da--------lr~ 749 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALAL-----DPDHVPSMTALAELLLE-LGSPRLAEKRSLLSDA--------LRL 749 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHH-hCCcchHHHHHHHHHH--------Hhh
Confidence 889999999999999999999999999965 79998877666544221 111111111 21111 122
Q ss_pred CCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 406 HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 406 ~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
.+..-++|+++|.++.++|+.++|.++|.-|+++.++.-
T Consensus 750 dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 750 DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 235668999999999999999999999999999987653
No 76
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.90 E-value=2.7e-08 Score=103.30 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=96.2
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
...+.+++.+|.++..+|++++|+.+|++|+.+. .++.....++.++|.+|..+|++++|+.+|++++.+....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~- 105 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL- 105 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 3467889999999999999999999999999873 3445567799999999999999999999999999862211
Q ss_pred CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001110 279 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 327 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~ 327 (1155)
+..+..++.++.++|..+..+|+++.|+.+|.+|+.++++.++.++...
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 1112223334444444444999999999999999999999888777544
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.3e-07 Score=107.94 Aligned_cols=249 Identities=12% Similarity=0.077 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
....+..+|.+++..|++.+|+..|+++.-+ +|++...+-..|.++...|++++-..+....+.+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~----- 297 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK----- 297 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-----
Confidence 3556788899999999999999999998766 678888888888888888888877666665555421
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
.++.-++--+.+.+...+|..|+.+-++++.. ++....+|...|.++..+|+.++|.-.|+.|..+.
T Consensus 298 ---~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-- 364 (564)
T KOG1174|consen 298 ---YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-- 364 (564)
T ss_pred ---cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc--
Confidence 22334455567777888888888888888875 34445677888999999999999999999888775
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHHHHhHHHHHHHHh-----
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE-YFESKAFEQQEAARN----- 392 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La-~l~qk~~e~AeAi~~----- 392 (1155)
|....+|..|-.+|...|.+.+|......++..+.. ..+++.....+. ...-...+.++.+..
T Consensus 365 ------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-----sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174|consen 365 ------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-----SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI 433 (564)
T ss_pred ------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-----chhhhhhhcceeeccCchhHHHHHHHHHhhhcc
Confidence 556788888888888889999888888777766532 122221111000 000000011111111
Q ss_pred -----------------cCCCCc-hhhhhc--CCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 393 -----------------GTRKPD-ASIASK--GHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 393 -----------------~~~~~~-~~~a~~--~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
.....+ ...... ....-..++..||.++..++.+++|+++|..||.+.++..
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 000000 000000 0001224677899999999999999999999999887643
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.88 E-value=5.6e-08 Score=104.33 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=106.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 001110 173 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 252 (1155)
Q Consensus 173 ~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~ 252 (1155)
.++.++++..+++++.. +|.....|..||.+|..+|++++|+..|++|+.+ .|+...++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 56678888888888876 6788899999999999999999999999999997 4667888999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 253 FY-YRLQH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 253 iy-~~lG~--yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
++ ...|+ +++|.+.+++++.+ +|....+++++|.++..+|++++|+.+|++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 74 67787 59999999999986 56667899999999999999999999999999876
No 79
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.87 E-value=1.9e-08 Score=102.48 Aligned_cols=112 Identities=13% Similarity=0.005 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~ 242 (1155)
++.+|..+...|++++|+.+|++++.+ +|....++..+|.++..+|++++|+..|++++.+ .|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence 556789999999999999999999877 6778899999999999999999999999999986 467
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 298 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~ 298 (1155)
...+++++|.++..+|++++|+..|++++.+ .|.....+.++|.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHH
Confidence 7889999999999999999999999999986 34445556666655543
No 80
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.87 E-value=1.3e-06 Score=103.38 Aligned_cols=238 Identities=9% Similarity=-0.055 Sum_probs=162.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~-A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
++..+......|+++.|..+|.++.+. .+.. .......+.++...|++++|+..++++++. .|
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~--------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P 184 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAEL--------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------AP 184 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC
Confidence 445566779999999999999999865 2222 123334589999999999999999999876 35
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHHh---------------cCCCChhHHH
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL-------------------LHLT---------------CGPSHPNTAA 287 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei-------------------~e~l---------------~G~dhp~~a~ 287 (1155)
....++..++.+|...|++++|++.+.+..+. .... .....+....
T Consensus 185 ~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~ 264 (398)
T PRK10747 185 RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVA 264 (398)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHH
Confidence 55678888999999999999999777655421 0000 0011233455
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCH
Q 001110 288 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL 367 (1155)
Q Consensus 288 a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~ 367 (1155)
+...+|..+...|+.++|...++++++. ..++.....+ +. ...++.+++++.+++.++. .++++
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l~---~~--l~~~~~~~al~~~e~~lk~-----~P~~~ 328 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLLI---PR--LKTNNPEQLEKVLRQQIKQ-----HGDTP 328 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHHH---hh--ccCCChHHHHHHHHHHHhh-----CCCCH
Confidence 6677899999999999999999999873 2333322222 22 2448999998888776643 46777
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 368 RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 368 ~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
....++..+..-. +.+..++...+...... ++. ..+..++.++.++|+.++|..+|++++.+..+
T Consensus 329 ~l~l~lgrl~~~~-~~~~~A~~~le~al~~~--------P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 329 LLWSTLGQLLMKH-GEWQEASLAFRAALKQR--------PDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 6666666554433 33444433332222111 122 33568999999999999999999999987643
No 81
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=1.5e-07 Score=101.19 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=104.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001110 215 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 294 (1155)
Q Consensus 215 ~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~ 294 (1155)
.++.++++..+++++.. +|+....+..||.+|..+|++++|+.+|++++.+ .|+...++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 67788999999999886 5777889999999999999999999999999986 3556788899999
Q ss_pred HH-HHCCC--hHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 295 ME-EGLGN--VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 295 iy-~~lG~--~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
++ ...|+ +++|..+|++++++. +....+++++|.++..+|+|++|+.++++++++
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 74 67787 599999999999874 445578899999999999999999999999876
No 82
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=1e-06 Score=101.34 Aligned_cols=179 Identities=9% Similarity=0.117 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G-dydeAle~~eKALei~er~lG~D 239 (1155)
.++-.+-.++...+++++|+..+.+++.+ +|....+|+..+.++..+| ++++|+.++.+++..
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-------- 101 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-------- 101 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------
Confidence 33333334566788999999999999988 6888889999999999998 689999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~y--eeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
++....++++.+.++..+|+. ++++.++.+++.+ +|....++.+.+.++..+|++++|++++.++|++.
T Consensus 102 npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d- 172 (320)
T PLN02789 102 NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED- 172 (320)
T ss_pred CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-
Confidence 466677899999999999874 7889999999875 56778899999999999999999999999999874
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHc---CCh----hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLM---EAY----PLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~l---Gdy----eeAle~lkkALeI~kk~lG~dh~~t~~al~~L 376 (1155)
+....+++..+.++..+ |.+ ++++.+..+++.+ .+++...+..+.++
T Consensus 173 -------~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-----~P~N~SaW~Yl~~l 226 (320)
T PLN02789 173 -------VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-----NPRNESPWRYLRGL 226 (320)
T ss_pred -------CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-----CCCCcCHHHHHHHH
Confidence 33456777888877765 333 4677777777765 46665555544444
No 83
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=5.1e-08 Score=108.28 Aligned_cols=124 Identities=25% Similarity=0.313 Sum_probs=107.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
....++.+-..|.-++..++|.+|+..|.+||++ .|..+..|.+.|.+|.++|.|+.|++-++.||.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 3456888999999999999999999999999998 6888899999999999999999999999999998
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChH
Q 001110 236 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 303 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~d 303 (1155)
+|....+|..||.+|+.+|+|++|++.|++||++ +|+......+|..+-..+++..
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 6788999999999999999999999999999996 3444455556655555555443
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=2.7e-06 Score=103.43 Aligned_cols=147 Identities=18% Similarity=0.085 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCC
Q 001110 285 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 364 (1155)
Q Consensus 285 ~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~ 364 (1155)
...+++.||..|...|++++|+.+.++||+.. |.....|+..|.+|...|++.+|..+++.|-.+ +.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~ 259 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------PTLVELYMTKARILKHAGDLKEAAEAMDEAREL-----DL 259 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----Ch
Confidence 36788999999999999999999999999874 556788999999999999999999988877654 11
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHh-cCCCCchhhhhcCCCcHHH---HHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001110 365 DDLRTQDAAAWLEYFESKAFEQQEAARN-GTRKPDASIASKGHLSVSD---LLDYINPSHDTKGRNVSTLKRKTYVAKVK 440 (1155)
Q Consensus 365 dh~~t~~al~~La~l~qk~~e~AeAi~~-~~~~~~~~~a~~~~~svae---lL~~Lg~~y~~qGdyeeAle~yeKALeL~ 440 (1155)
..+.+.+...-..+..+..+.++.+.. ...... .....+.-.+ .....|.+|..+|++..|++.|....+++
T Consensus 260 -~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~---~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 260 -ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV---DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred -hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC---CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 122333333333444445555544332 222111 1111111122 23345889999999999999999999999
Q ss_pred hhhcCCCC
Q 001110 441 GNFYQDNN 448 (1155)
Q Consensus 441 ~kl~~e~~ 448 (1155)
..+....-
T Consensus 336 ~~~~~DQf 343 (517)
T PF12569_consen 336 DDFEEDQF 343 (517)
T ss_pred HHHhcccc
Confidence 98874433
No 85
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6.7e-07 Score=102.20 Aligned_cols=166 Identities=17% Similarity=0.134 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..++--+...+...+|..|+.+..++++. ++....+|...|.++..+|+.++|+..|+.|..+ .
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--------a 364 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQML--------A 364 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhc--------c
Confidence 34444566777888899999998888876 4556678888999999999999999999999887 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHH-HCCChHHHHHHHHHHHHHHHH
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA-MMEE-GLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA-~iy~-~lG~~deAle~lekALei~ek 318 (1155)
|....+|..|-.+|...|++.+|.-..+.++..+. ..+.++.-+| .++. .----++|..+|+++|.+.
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-- 434 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-- 434 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--
Confidence 66778999999999999999999988888887642 2356666665 3333 2333578999999998864
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
|....+-..+|.++...|.+..++.++++++.++
T Consensus 435 ------P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 435 ------PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred ------CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 5566777789999999999999999999999764
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.77 E-value=1.4e-07 Score=93.37 Aligned_cols=103 Identities=23% Similarity=0.221 Sum_probs=92.2
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
+|....++..+|.++...|++++|+.++++++.+ .+....++.++|.+|..+|++++|+.+|++++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 5667788999999999999999999999999886 3556788999999999999999999999999885
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+|.....++++|.+|...|++++|+.+|++++++.
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35567788999999999999999999999999875
No 87
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.77 E-value=9.2e-07 Score=95.19 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
....++..|..++..|+|.+|+..|++.+..+ +.++....+...+|.+|+..|++++|+..+++.+..+ +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 46789999999999999999999999998774 5567888999999999999999999999999999875 5
Q ss_pred CChhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHhcCCCChhH--------------HHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQ-----------HTELALKYVKRALYLLHLTCGPSHPNT--------------AATYINVA 293 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG-----------~yeeAle~yekALei~e~l~G~dhp~~--------------a~a~~nLA 293 (1155)
+++....+++.+|.+++.+. ...+|+..|+..+..+ ++.+.. +.--+.+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999887653 2346677776666542 333322 23345678
Q ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHH
Q 001110 294 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV 348 (1155)
Q Consensus 294 ~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAl 348 (1155)
..|...|.|..|+..++.+++.+ ++.+....++..|+..|..+|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999999999886 667778889999999999999988554
No 88
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.75 E-value=6.9e-07 Score=113.89 Aligned_cols=174 Identities=10% Similarity=0.063 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+...+..+.+.+++|+++.|+..|+++++. +|....+...++.++...|++++|+.++++++. .
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-------p 97 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-------S 97 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-------C
Confidence 3557788899999999999999999999987 455433333888888899999999999999982 1
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
.+.....+..+|.+|..+|+|++|+++|+++++. +|....++..++.+|...++.++|+..+++++...
T Consensus 98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-- 166 (822)
T PRK14574 98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-- 166 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--
Confidence 2333455666688999999999999999999985 34445667788999999999999999999988764
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHH
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 370 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~ 370 (1155)
+. ...+..++.++..++++.+|++.++++++. .+++....
T Consensus 167 ------p~-~~~~l~layL~~~~~~~~~AL~~~ekll~~-----~P~n~e~~ 206 (822)
T PRK14574 167 ------PT-VQNYMTLSYLNRATDRNYDALQASSEAVRL-----APTSEEVL 206 (822)
T ss_pred ------cc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh-----CCCCHHHH
Confidence 11 222344566666677777799999998876 46555543
No 89
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.74 E-value=2.7e-07 Score=96.29 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=102.4
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
.++..+.+++++|.+|...|++++|+.+|++++.+. ++++....++.++|.++..+|++++|+.+|++++.+.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 102 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-- 102 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 345677889999999999999999999999999863 2344456789999999999999999999999999874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH-------cCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 001110 319 LLGPDHIQTAASYHAIAIALSL-------MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 378 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~-------lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~ 378 (1155)
+.....+..+|.+|.. +++++.|+..+++|++++++.+..++..+..+..|+..
T Consensus 103 ------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 163 (172)
T PRK02603 103 ------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKT 163 (172)
T ss_pred ------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence 2234556666777765 45688888899999999888887777777777777654
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.4e-07 Score=107.76 Aligned_cols=197 Identities=21% Similarity=0.197 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER--- 234 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er--- 234 (1155)
.....+...+.+|+..|+|.+.+..+..+++......- +...++.++..+|..|..+++++.|+.+|++++.-.+.
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 34455667788888899999888888888876544311 22346777888999999999999999999998875432
Q ss_pred ---------hc------CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 001110 235 ---------EL------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 299 (1155)
Q Consensus 235 ---------~l------G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l 299 (1155)
.. .--.+..+.-...-|..++..|+|..|+.+|.+|+.. .|..+..|.|.|.+|..+
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKL 405 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHH
Confidence 10 0123444555567799999999999999999998874 588899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 001110 300 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 379 (1155)
Q Consensus 300 G~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l 379 (1155)
|++..|+...++++++ ++.....|..-|.++..+.+|++|++.|+++++. ++....+..++...
T Consensus 406 ~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRC 469 (539)
T ss_pred hhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHH
Confidence 9999999999999987 4667888999999999999999999999999865 34444555555433
No 91
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.72 E-value=4e-07 Score=108.43 Aligned_cols=229 Identities=15% Similarity=0.080 Sum_probs=123.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 001110 165 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 244 (1155)
Q Consensus 165 ~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a 244 (1155)
..+..+...|+...|..++.+|++. +|..-..+..--.+.....+++.|..+|.+|... ..+.
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llakar~~---------sgTe 651 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTE 651 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcc
Confidence 3345556667777777777776655 3333344444444555555666666666665442 2234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCc
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 324 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dh 324 (1155)
..|+--+.+...+++.++|+++++++|+. .|+.-..|..+|.++.++++.+.|...|...++.+
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-------- 715 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-------- 715 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--------
Confidence 45555555556666666666666666554 23344555566666666666666666665554433
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHH----------------------------------HHHHHHHcCCCCHHHH
Q 001110 325 IQTAASYHAIAIALSLMEAYPLSVQHEQTT----------------------------------LQILRAKLGPDDLRTQ 370 (1155)
Q Consensus 325 p~~a~a~~nLA~iy~~lGdyeeAle~lkkA----------------------------------LeI~kk~lG~dh~~t~ 370 (1155)
|...-.|..|+.+-...|+.-.|...|.++ |+-+ +.....+
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-----p~sg~LW 790 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC-----PSSGLLW 790 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccchhH
Confidence 222334444555555555555555555444 4332 1111111
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 371 DAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 371 ~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
....||.---+.......++..... -..++..+|..+....++++|+++|++++++.+.++
T Consensus 791 aEaI~le~~~~rkTks~DALkkce~-------------dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 791 AEAIWLEPRPQRKTKSIDALKKCEH-------------DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHhccCcccchHHHHHHHhccC-------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 1111111111111111112221111 123678899999999999999999999999988876
No 92
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=5.9e-07 Score=113.75 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=92.9
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001110 154 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 233 (1155)
Q Consensus 154 ~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e 233 (1155)
++......++..+...+...+++++|++++..+++. +|....+|+.+|.+|+..+++++|... .++.+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~ 94 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS 94 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence 445566778888999999999999999999988876 678888999999999999998777655 4444322
Q ss_pred Hhc-----------CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCh
Q 001110 234 REL-----------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV 302 (1155)
Q Consensus 234 r~l-----------G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~ 302 (1155)
... -.+.+..-.+++.||.||-.+|++++|...|+++|++ +|..+.+++++|..|... ++
T Consensus 95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hH
Confidence 100 0011222235555555555555555555555555553 244455555555555555 55
Q ss_pred HHHHHHHHHHHHH
Q 001110 303 HVALRYLHKALKC 315 (1155)
Q Consensus 303 deAle~lekALei 315 (1155)
++|+.++.+|+..
T Consensus 166 ~KA~~m~~KAV~~ 178 (906)
T PRK14720 166 EKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 93
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.5e-07 Score=107.70 Aligned_cols=260 Identities=17% Similarity=0.067 Sum_probs=178.4
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001110 154 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 233 (1155)
Q Consensus 154 ~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e 233 (1155)
.....++..+...|..++.+.+|.+|+..|..|++++ |..+..|.+.+.+|+..|+|++|+-.+++.+.+
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~-- 112 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQSVRL-- 112 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhhheec--
Confidence 3345567888899999999999999999999999983 556889999999999999999999999999886
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHHHHHhcCC--CChhHHHHHHHHHHHHHHCCChH
Q 001110 234 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRA--------LYLLHLTCGP--SHPNTAATYINVAMMEEGLGNVH 303 (1155)
Q Consensus 234 r~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekA--------Lei~e~l~G~--dhp~~a~a~~nLA~iy~~lG~~d 303 (1155)
.+.....+..++.++..+++..+|.+.|+.. +...+.+... ..|....+...-+.++..+|+++
T Consensus 113 ------kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 113 ------KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred ------CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 2344556777888888888888887766522 1111111111 12445556666789999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 001110 304 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA 383 (1155)
Q Consensus 304 eAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~ 383 (1155)
+|+..-...+++- ...+.+++.-|.+++..++.+.|+.+|++++.+ +++|.....+......+..+.
T Consensus 187 ~a~~ea~~ilkld--------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 187 EAQSEAIDILKLD--------ATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hHHHHHHHHHhcc--------cchhHHHHhcccccccccchHHHHHHHhhhhcc-----ChhhhhHHhHhhhHHHHHHHH
Confidence 9987666555543 345667777889999999999999999999965 788877666655443332221
Q ss_pred HH---------HHHHHHhcCC--CCc------------------------------hhhhhcCCCcHHHHHHHHHHHHHH
Q 001110 384 FE---------QQEAARNGTR--KPD------------------------------ASIASKGHLSVSDLLDYINPSHDT 422 (1155)
Q Consensus 384 ~e---------~AeAi~~~~~--~~~------------------------------~~~a~~~~~svaelL~~Lg~~y~~ 422 (1155)
.. ..++...+.. .++ ...+..-.......|..-|.+|..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 11 1111111111 111 001111223355666667777777
Q ss_pred cCChHHHHHHHHHHHHHhhh
Q 001110 423 KGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 423 qGdyeeAle~yeKALeL~~k 442 (1155)
++++++|.+.|+++++....
T Consensus 334 le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 88888888888888776655
No 94
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.70 E-value=8.2e-07 Score=106.28 Aligned_cols=246 Identities=11% Similarity=0.087 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..++..+.-++..++|...+...++.|.. ++....++...|..+..+|+-++|..+.+.++.. +
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------D 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--------C
Confidence 34667777788899999999999888874 4566678889999999999999999999999874 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
+....++.-+|.++....+|++|+++|+.|+.+ .++...+|..|+.+..++++|+-....-.+.|++.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---- 139 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---- 139 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----
Confidence 445568889999999999999999999999986 45567889999999999999998877776666654
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchh
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 400 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~ 400 (1155)
+..-..|..+|..+...|++..|...++.-.......+......-..+.........+....++++........ .
T Consensus 140 ----~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-~ 214 (700)
T KOG1156|consen 140 ----PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-Q 214 (700)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-H
Confidence 44556788889999999999999998776655443222222222222222222222222333333322111111 0
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 401 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 401 ~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
+ .+.......-+.++..++++++|...|...+...+...
T Consensus 215 i-----~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 215 I-----VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred H-----HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 0 11222344567778899999999999988776655543
No 95
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.70 E-value=3.8e-07 Score=93.84 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
...-+.+|.+|..++..|++++|..+|+-+..+ ++.....|++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 445677899999999999999999999988776 7888999999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 274 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~ 274 (1155)
.++....+.++|.||+..|+.+.|++.|+.|+..+
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35667899999999999999999999999999986
No 96
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.69 E-value=2.4e-06 Score=94.76 Aligned_cols=174 Identities=14% Similarity=0.137 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
....++..|..++..|+|++|+..|++++... +..+....+...||.+|+..+++++|+.++++.+... +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 36668899999999999999999999998863 4456677788999999999999999999999999985 6
Q ss_pred CChhhHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHhcCCCChh--------------HH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQ---------------H---TELALKYVKRALYLLHLTCGPSHPN--------------TA 286 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG---------------~---yeeAle~yekALei~e~l~G~dhp~--------------~a 286 (1155)
+|+....+++.+|.++..++ + ..+|+..|++.+..+ ++... ++
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 78899999999999875554 1 235566666655532 22221 23
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 001110 287 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 352 (1155)
Q Consensus 287 ~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lk 352 (1155)
.--..+|..|.+.|.|.-|+.-++.+++-+ ++.+....+++.+...|..+|..++|..+..
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334567889999999999999999999876 6667788999999999999999999987654
No 97
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.69 E-value=5.8e-07 Score=93.87 Aligned_cols=114 Identities=20% Similarity=0.229 Sum_probs=90.8
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 197 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 197 d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
..+..+.+++.+|.+|...|++++|+.+|++++.+.. +.+....++.++|.+|..+|++++|+.+|++++.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 4556788999999999999999999999999998742 33445678999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCC-------hHHHHHHHHHHHHHHHHhcCCC
Q 001110 277 TCGPSHPNTAATYINVAMMEEGLGN-------VHVALRYLHKALKCNQRLLGPD 323 (1155)
Q Consensus 277 l~G~dhp~~a~a~~nLA~iy~~lG~-------~deAle~lekALei~ek~lG~d 323 (1155)
+|.....+.++|.+|..+|+ +++|+.+|++|++++++....+
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 34456677788888877655 6677777777777766655433
No 98
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.69 E-value=3e-06 Score=110.80 Aligned_cols=169 Identities=11% Similarity=-0.020 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..+..+...|...|++++|+.+|.+.... ...|+ ..+|+.|...|...|++++|.++|.+..... .| -.
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~g-i~ 576 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAET---HP-ID 576 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---CC-CC
Confidence 34445556677778888877777766543 11222 3467777777777777777777777665421 01 11
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
|+ ..+|+.|...|.+.|++++|+++|++..+. +......+|+.+...|.+.|++++|+.+|++..+.-
T Consensus 577 PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---- 644 (1060)
T PLN03218 577 PD-HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---- 644 (1060)
T ss_pred Cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----
Confidence 22 346666777777777777777777765542 111223456666677777777777777776654321
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
-.++ ..+|..|...|.+.|++++|.+++++..
T Consensus 645 --v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 645 --VKPD-EVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred --CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1111 2345556666666666666666666544
No 99
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.67 E-value=6e-07 Score=92.45 Aligned_cols=102 Identities=15% Similarity=0.020 Sum_probs=93.5
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
++....++.+|..++..|++++|..+|+-++.+ ++.....+++||.++..+|+|++|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 567788999999999999999999999998887 5778899999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 279 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.++....+.++|.+|...|+.+.|+..|+.|+.+.
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 34556789999999999999999999999999987
No 100
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=3e-07 Score=91.01 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChH
Q 001110 224 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 303 (1155)
Q Consensus 224 ~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~d 303 (1155)
++++++.+ +|.....+..+|.++...|++++|+++|++++.+ +|....++.++|.++..+|+++
T Consensus 5 ~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 5 TLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHH
Confidence 45566554 4556678899999999999999999999998875 3556788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 304 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 304 eAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+|+.+|++++++. +.....++.+|.+|...|++++|+.++++++++
T Consensus 69 ~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 69 EAIDAYALAAALD--------PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHhcC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999998863 345677899999999999999999999999976
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.66 E-value=1.3e-05 Score=99.31 Aligned_cols=241 Identities=15% Similarity=0.127 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..+..++....++|++.+|+-+|.+|++. .|.....+...+.+|.++|++..|++.|.+++.+... .+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~----~d 275 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP----VD 275 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc----hh
Confidence 44555666667777777777777777766 4556677777888888888888888888888776430 00
Q ss_pred hh-hHHH------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHH-----------
Q 001110 241 PD-TMKS------------------------------------YGDLAVFYYRLQHTELALKYVKRALY----------- 272 (1155)
Q Consensus 241 p~-~a~a------------------------------------y~nLA~iy~~lG~yeeAle~yekALe----------- 272 (1155)
.. .... ++.++.+|....+++.|+.+...-..
T Consensus 276 ~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 276 IERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 01 1111 22334444444444444433322111
Q ss_pred -----------HH-------------HH---hcC----------------CC--ChhHHHHHHHHHHHHHHCCChHHHHH
Q 001110 273 -----------LL-------------HL---TCG----------------PS--HPNTAATYINVAMMEEGLGNVHVALR 307 (1155)
Q Consensus 273 -----------i~-------------e~---l~G----------------~d--hp~~a~a~~nLA~iy~~lG~~deAle 307 (1155)
++ +. +.+ .+ ..+....|..++.+|...|+|.+|+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~ 435 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALR 435 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 00 00 000 00 12235678899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHH
Q 001110 308 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQ 387 (1155)
Q Consensus 308 ~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~A 387 (1155)
+|-.+...- ....+.+|+.+|.+|..+|.+++|+++|.+++.. .++|... +..|+.+.++.+...
T Consensus 436 ~l~~i~~~~-------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-----~p~~~D~---Ri~Lasl~~~~g~~E 500 (895)
T KOG2076|consen 436 LLSPITNRE-------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL-----APDNLDA---RITLASLYQQLGNHE 500 (895)
T ss_pred HHHHHhcCc-------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCchhh---hhhHHHHHHhcCCHH
Confidence 998766532 2234778999999999999999999999999965 4666544 444555555555554
Q ss_pred HHHHhcCC--CCch-hhhhcCCCcHHHHHHHHHHHHHHcCChHH
Q 001110 388 EAARNGTR--KPDA-SIASKGHLSVSDLLDYINPSHDTKGRNVS 428 (1155)
Q Consensus 388 eAi~~~~~--~~~~-~~a~~~~~svaelL~~Lg~~y~~qGdyee 428 (1155)
++...... .++. ............++.....+|.+.|+.++
T Consensus 501 kalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 501 KALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 54443222 1221 11122233455677888889999999988
No 102
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.65 E-value=3e-07 Score=107.34 Aligned_cols=96 Identities=22% Similarity=0.239 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
.+...|..++..|+|++|+.+|.+|+++ .+....+|.++|.+|..+|++++|+..+++|+.+ .+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DP 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Cc
Confidence 4677889999999999999999999987 5667889999999999999999999999999997 35
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
....+|+.+|.+|+.+|+|++|+.+|++++.+
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66788999999999999999999999999986
No 103
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.64 E-value=5.3e-06 Score=108.55 Aligned_cols=240 Identities=13% Similarity=0.055 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...+..+...|...|++++|.++|.+...... .-.|+ ..+|..|...|...|++++|+++|++..+. +
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------g 609 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-------N 609 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------C
Confidence 34566677788899999999999998865311 11233 457888889999999999999999987653 2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
-.....+|+.|...|.+.|++++|+++|.+.... | -.|+ ..+|..+...|...|++++|+++|+++++.-
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G--- 679 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQG--- 679 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---
Confidence 2234568999999999999999999999987652 2 2333 4578889999999999999999999877531
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHHHhHHHHHHHHhcCCCC
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKP 397 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La--~l~qk~~e~AeAi~~~~~~~ 397 (1155)
. .....+|..|...|.+.|++++|+++|++.... -..+ +..+ +..|. +...+..+.+..+......
T Consensus 680 --~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~---g~~P-dvvt---yN~LI~gy~k~G~~eeAlelf~eM~~- 747 (1060)
T PLN03218 680 --I--KLGTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRP-TVST---MNALITALCEGNQLPKALEVLSEMKR- 747 (1060)
T ss_pred --C--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCC-CHHH---HHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 1 123457888999999999999999998875432 1112 2222 22232 2333334444333221110
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001110 398 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 439 (1155)
Q Consensus 398 ~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL 439 (1155)
....++ ..+|..+-..+.+.|++++|..++.+.++.
T Consensus 748 -----~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 748 -----LGLCPN-TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred -----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 011112 234555667889999999999999887653
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=5.1e-07 Score=98.80 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=128.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 001110 164 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 243 (1155)
Q Consensus 164 l~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~ 243 (1155)
+.++..+...|+-+.+..+..+++.. ++.....+..+|......|+|.+|+..+++|..+ .|..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d 133 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTD 133 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCC
Confidence 56667778888888888887776533 4455556666999999999999999999999886 5777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCC
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 323 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~d 323 (1155)
..+++.+|.+|.+.|++++|..-|.+++++. +....+++|||+.|.-.|+++.|..++..+...- .
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-----~- 199 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-----A- 199 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-----C-
Confidence 8999999999999999999999999999973 2234578999999999999999999999876542 2
Q ss_pred cHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 001110 324 HIQTAASYHAIAIALSLMEAYPLSVQHE 351 (1155)
Q Consensus 324 hp~~a~a~~nLA~iy~~lGdyeeAle~l 351 (1155)
.-..+..||+.+...+|++++|....
T Consensus 200 --ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 200 --ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred --CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 23467789999999999999998753
No 105
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.63 E-value=5.2e-07 Score=86.31 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCc
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 324 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dh 324 (1155)
.+++.+|..+..+|++++|+++|.+++.. .++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 56889999999999999999999999875 24455567789999999999999999999999999764 455
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 001110 325 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 372 (1155)
Q Consensus 325 p~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~a 372 (1155)
+....+++.+|.++..+|++++|+.+++++++. .+++.....+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~ 115 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLA 115 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHH
Confidence 556678999999999999999999999998876 3555544433
No 106
>PLN02789 farnesyltranstransferase
Probab=98.58 E-value=2.5e-06 Score=98.25 Aligned_cols=187 Identities=11% Similarity=0.058 Sum_probs=142.2
Q ss_pred CChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHH
Q 001110 155 CSSADGRQLLESSKTALDKG-KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF--NQATIYQQKALDI 231 (1155)
Q Consensus 155 ~~s~~A~~Ll~lG~~yl~~G-dyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gdy--deAle~~eKALei 231 (1155)
........+...+.++...| ++++|+.++.+++.. ++....+|+..+.++..+|+. ++++.++.+++.+
T Consensus 66 lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~ 137 (320)
T PLN02789 66 LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL 137 (320)
T ss_pred HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh
Confidence 34444566777788888888 689999999999977 677778899999999888874 6788899899876
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---CCh----HH
Q 001110 232 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---GNV----HV 304 (1155)
Q Consensus 232 ~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l---G~~----de 304 (1155)
++....++.+.+.++..+|+|++|++++.++|++ ++....++++.+.++... |.+ ++
T Consensus 138 --------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 138 --------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred --------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhccccccccccHHH
Confidence 5677889999999999999999999999999986 455577888888888766 333 46
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 001110 305 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE 380 (1155)
Q Consensus 305 Ale~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~----lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~ 380 (1155)
++.+..+++.+. |....+++.++.++.. +++..+|+..+.++++ ..+....++.+|+.+.
T Consensus 202 el~y~~~aI~~~--------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~ 265 (320)
T PLN02789 202 ELKYTIDAILAN--------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLL 265 (320)
T ss_pred HHHHHHHHHHhC--------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHH
Confidence 888888888764 4445678888888877 4556667777766554 1233345566666555
Q ss_pred H
Q 001110 381 S 381 (1155)
Q Consensus 381 q 381 (1155)
.
T Consensus 266 ~ 266 (320)
T PLN02789 266 C 266 (320)
T ss_pred H
Confidence 4
No 107
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.58 E-value=9.7e-07 Score=84.43 Aligned_cols=104 Identities=20% Similarity=0.162 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 203 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 203 ~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dh 282 (1155)
..++.+|..+...|++++|+.+|.+++... .+++....+++.+|.+++..|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 468899999999999999999999998752 344555778999999999999999999999999875 3455
Q ss_pred hhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 283 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 283 p~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+....++..+|.++..+|++++|+.+|+++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5667789999999999999999999999999875
No 108
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.58 E-value=3.6e-06 Score=85.53 Aligned_cols=136 Identities=22% Similarity=0.158 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+...|......+..++...+...+.+.+.-. +..+....+...+|.+++..|++++|...|++++... .
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~ 79 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----P 79 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----C
Confidence 35566666777778999999887777766542 3455667888999999999999999999999998852 3
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 313 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekAL 313 (1155)
+......+...||.++..+|+|++|+..++.. .+.+.....+..+|.+|...|++++|+..|++||
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 33444567888999999999999999998652 1234456677889999999999999999999985
No 109
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=3.9e-07 Score=101.36 Aligned_cols=121 Identities=22% Similarity=0.271 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 200 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 279 (1155)
Q Consensus 200 ~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G 279 (1155)
..+.-+-.-|.-++..++|.+|+..|.+||.+ .|..+..|.|.|.+|.++|+|+.|++-++.||.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------ 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------ 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 44566777788889999999999999999998 5777889999999999999999999999999997
Q ss_pred CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCCh
Q 001110 280 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 344 (1155)
Q Consensus 280 ~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdy 344 (1155)
+|....+|..||.+|..+|++++|++.|++||++. ++. .....+|..+-..+++-
T Consensus 145 --Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld-----P~N---e~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 145 --DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD-----PDN---ESYKSNLKIAEQKLNEP 199 (304)
T ss_pred --ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC-----CCc---HHHHHHHHHHHHHhcCC
Confidence 68889999999999999999999999999999985 332 24444555544444433
No 110
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.56 E-value=1.4e-05 Score=102.20 Aligned_cols=260 Identities=12% Similarity=0.013 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...+..+|..+..+|+|++|+++|+++++. +|....++..|+.+|...++.++|+..+++++..
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-------- 165 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER-------- 165 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--------
Confidence 455666788999999999999999999987 5666778888999999999999999999998775
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHH-------------
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL------------- 306 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAl------------- 306 (1155)
.+. ...+..++.++..++++.+|++.|+++++.. |.....+..+..++...|-...|+
T Consensus 166 dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~--------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~ 236 (822)
T PRK14574 166 DPT-VQNYMTLSYLNRATDRNYDALQASSEAVRLA--------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAE 236 (822)
T ss_pred Ccc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHH
Confidence 233 2233556677767788877999999988751 111222222222222222211111
Q ss_pred ----------------------------HHHHHHHHHHHHhcC---C---CcHH--------------------------
Q 001110 307 ----------------------------RYLHKALKCNQRLLG---P---DHIQ-------------------------- 326 (1155)
Q Consensus 307 ----------------------------e~lekALei~ek~lG---~---dhp~-------------------------- 326 (1155)
..+++||.....++. . .++.
T Consensus 237 ~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 237 HYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 122223322222211 0 0111
Q ss_pred ---------HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCC
Q 001110 327 ---------TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 397 (1155)
Q Consensus 327 ---------~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~ 397 (1155)
-..+...+|..|...++-++|+..|++++.---.................+++..+.++.++.+.......
T Consensus 317 ~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 317 AMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 12234456667777777777777776665321000000011111122344566667777776655433221
Q ss_pred ch-h------hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 398 DA-S------IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 398 ~~-~------~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
.. . .....++++.+....++.++...|++.+|.+.+++.+...+...
T Consensus 397 ~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~ 450 (822)
T PRK14574 397 TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ 450 (822)
T ss_pred CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 11 0 11234567888888899999999999999999998887766543
No 111
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=7.3e-06 Score=97.54 Aligned_cols=219 Identities=18% Similarity=0.109 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..++..-..+...|+|++|+....+.+.+. |....+++.--.++...++|++|+...++-....
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-------- 76 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-------- 76 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--------
Confidence 445555556778899999999888887762 4444566666667777888888885444322110
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH----
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN---- 316 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~---- 316 (1155)
......+.-|.|++++++.++|+..++ .+ .+.+ -.++.--|.+++++|+|++|+..|+..++-.
T Consensus 77 -~~~~~~fEKAYc~Yrlnk~Dealk~~~-~~-------~~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 77 -VINSFFFEKAYCEYRLNKLDEALKTLK-GL-------DRLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred -hcchhhHHHHHHHHHcccHHHHHHHHh-cc-------cccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 011112678899999999999998887 11 1122 2344556888999999999999998664311
Q ss_pred -------------------HHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 001110 317 -------------------QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 377 (1155)
Q Consensus 317 -------------------ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La 377 (1155)
.+.........-..+||.|.++...|+|.+|++.+++|++++++.+..++..--+..
T Consensus 145 d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie---- 220 (652)
T KOG2376|consen 145 DEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIE---- 220 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHH----
Confidence 011111112245678999999999999999999999999999887765543210000
Q ss_pred HHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001110 378 YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 440 (1155)
Q Consensus 378 ~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~ 440 (1155)
..+.-+...++-++..+|+.++|...|...++..
T Consensus 221 -----------------------------~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 221 -----------------------------EELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 0233455667778888899999888887766543
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=2.2e-06 Score=103.93 Aligned_cols=169 Identities=20% Similarity=0.240 Sum_probs=138.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 001110 167 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 246 (1155)
Q Consensus 167 G~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~a 246 (1155)
.+.|...||+-.=-.+|++|.++.... .+.+.+.+|...+..++|.+|..+++.++++ .+....+
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~ 521 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGT 521 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhH
Confidence 446666777777777888888876443 4557778888888899999999999999998 4667889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHH
Q 001110 247 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 326 (1155)
Q Consensus 247 y~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~ 326 (1155)
|+.+|.+...++++..|.++|.+++.+ .|+.+.+++|++..|...++-.+|...+++|+++. .+|+
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-----~~~w- 587 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-----YQHW- 587 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-----CCCC-
Confidence 999999999999999999999999875 57779999999999999999999999999999976 2233
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCC
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 366 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh 366 (1155)
.++-|.-.+..+.|.+++|+..|++-+.+.+...++.+
T Consensus 588 --~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~v 625 (777)
T KOG1128|consen 588 --QIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEV 625 (777)
T ss_pred --eeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchh
Confidence 44556667778999999999999999888766553333
No 113
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.52 E-value=7.9e-06 Score=103.40 Aligned_cols=128 Identities=11% Similarity=0.031 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..+..+...|...|++++|+.+|.+.... .-.++ ..+|..+..+|...|++++|.+.+..+++. | .
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-----g--~ 356 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDS------GVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----G--F 356 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh-----C--C
Confidence 34556677788888898888888876543 11222 346777777777777777777777666543 1 1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 313 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekAL 313 (1155)
.....+++.|...|.+.|++++|.+.|++..+ + ...+|+.|...|...|+.++|+++|++.+
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11233455555556666666666555554321 1 12345555555555555555555555543
No 114
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=6.3e-05 Score=89.86 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=118.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----------
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN---------- 232 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~---------- 232 (1155)
.|+.+.++++.++.++|+..++-+ ++..-.++...|.+++.+|+|++|+..|+..+.-.
T Consensus 82 ~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 82 FFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred hHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 378888999999999999888721 22234467788999999999999999998863310
Q ss_pred -------------HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHHH
Q 001110 233 -------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP-------NTAATYINV 292 (1155)
Q Consensus 233 -------------er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp-------~~a~a~~nL 292 (1155)
.+.......+....++|.|.++...|+|.+|++.+++|+.++++.+..++. ++..+...|
T Consensus 151 nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 151 NLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred HHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 011111223366788999999999999999999999999998876643322 345677889
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 001110 293 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 337 (1155)
Q Consensus 293 A~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~i 337 (1155)
+.+++.+|+.++|...|...+... ..|.+..+.+-+||-.+
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVAL 271 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhhh
Confidence 999999999999999999887653 24555555555555443
No 115
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=4.5e-05 Score=82.87 Aligned_cols=226 Identities=17% Similarity=0.055 Sum_probs=161.5
Q ss_pred CCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001110 196 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 275 (1155)
Q Consensus 196 ~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e 275 (1155)
.+....+..|..-+.+|+...+|++|...+.+|.+.++.. ..-...+.+|-..|.+...+..+.++..+|++|..++.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444456677777888999999999999999999988764 23345688899999999999999999999999999988
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 276 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 276 ~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
+.. .|+.+..-...|--....-+.++|+.+|++++.+.+.- ....+....+...+++|.....|.+|-..+++-.
T Consensus 103 E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 103 ECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred HhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 742 45555544444555566778999999999999998652 2223344667788999999999999999998877
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 001110 356 QILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 433 (1155)
Q Consensus 356 eI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~y 433 (1155)
.+..+.-.-....-......|.++...++.+++.............. ..-...+.+|=..| ..|+.+++-+.+
T Consensus 178 ~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~----sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 178 VAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK----SEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC----hHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 77766544445545556666778888888888877653222221111 12233444444444 468888765554
No 116
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.51 E-value=5.7e-06 Score=104.66 Aligned_cols=57 Identities=9% Similarity=0.054 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 288 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 288 a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
+++.|..+|.+.|++++|.+.|++..+ + ...+|..|...|.+.|+.++|+++|++..
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR-------K----NLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555555555555555544321 1 12456667777777777777777776654
No 117
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.50 E-value=1e-06 Score=102.88 Aligned_cols=96 Identities=22% Similarity=0.226 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 205 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 284 (1155)
Q Consensus 205 l~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~ 284 (1155)
+...|..++..|+|++|+.+|++||.+ .+....+|.++|.+|..+|++++|+.++++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 556788899999999999999999987 4566789999999999999999999999999986 355
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 285 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 285 ~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
...+|+++|.+|..+|+|++|+.+|++|+++.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 67789999999999999999999999999875
No 118
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.46 E-value=8.9e-06 Score=82.67 Aligned_cols=123 Identities=18% Similarity=0.093 Sum_probs=97.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001110 214 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 293 (1155)
Q Consensus 214 ~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA 293 (1155)
..++...+...+++.+.- ..+.+....+...+|.+++..|++++|...|++++.. .++......+...||
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHH
Confidence 577888877766666554 2344556788899999999999999999999999874 233444566788999
Q ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 294 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 294 ~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
.++..+|++++|+..++.. .+.......+..+|.+|..+|++++|+..|++|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999998652 2334456678889999999999999999999875
No 119
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.46 E-value=6e-06 Score=102.46 Aligned_cols=234 Identities=13% Similarity=0.011 Sum_probs=170.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 001110 173 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 252 (1155)
Q Consensus 173 ~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~ 252 (1155)
+.+...|+..|-+++++ ++..+.++..||.+|+..-|...|..+|++|.++ ++..+.+.-.++.
T Consensus 471 rK~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~ad 534 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASAD 534 (1238)
T ss_pred hhhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHH
Confidence 34567788888888876 6788999999999999999999999999999887 4566777788999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001110 253 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 332 (1155)
Q Consensus 253 iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~ 332 (1155)
.|.+..+++.|.....++-+.... ......+..+|..|...+++.+|+..|+.|++.. |....++.
T Consensus 535 tyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--------PkD~n~W~ 600 (1238)
T KOG1127|consen 535 TYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--------PKDYNLWL 600 (1238)
T ss_pred HhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcCC--------chhHHHHH
Confidence 999999999999885444332111 1122345558999999999999999999999764 66778999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCc-hhhhhcCCCcHHH
Q 001110 333 AIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD-ASIASKGHLSVSD 411 (1155)
Q Consensus 333 nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~-~~~a~~~~~svae 411 (1155)
.||.+|...|.|..|++.|.+|..+ .+++.. .....+...+..++..+++........ .........++++
T Consensus 601 gLGeAY~~sGry~~AlKvF~kAs~L-----rP~s~y---~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE 672 (1238)
T KOG1127|consen 601 GLGEAYPESGRYSHALKVFTKASLL-----RPLSKY---GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAE 672 (1238)
T ss_pred HHHHHHHhcCceehHHHhhhhhHhc-----CcHhHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9999999999999999999998754 344433 333333333333333333222111110 0111122346888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 412 LLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 412 lL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
++...+..+..+|=+.+|..+++++++.+--..
T Consensus 673 ~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 673 SVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 899999999999999999999999998876655
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=8.5e-06 Score=89.42 Aligned_cols=163 Identities=17% Similarity=0.109 Sum_probs=125.3
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
.|....+ .+++..++..|+-+.++.+..+++.. ++.....+..+|...++.|+|..|+..++++..+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence 4555566 88999999999999999888886653 3444445555899999999999999999999875
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
.|....+|+.+|.+|.+.|++++|..-|.+|+++. +....++.|||..|...|+++.|..++..+...
T Consensus 130 ----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 130 ----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 46668899999999999999999999999999987 334467899999999999999999999888742
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001110 358 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 391 (1155)
Q Consensus 358 ~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~ 391 (1155)
+..+..+...+. +..-.++....++.+.
T Consensus 198 -----~~ad~~v~~NLA-l~~~~~g~~~~A~~i~ 225 (257)
T COG5010 198 -----PAADSRVRQNLA-LVVGLQGDFREAEDIA 225 (257)
T ss_pred -----CCCchHHHHHHH-HHHhhcCChHHHHhhc
Confidence 344444433322 2223344555555543
No 121
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.43 E-value=1.9e-05 Score=88.82 Aligned_cols=209 Identities=17% Similarity=0.070 Sum_probs=143.4
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 197 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 197 d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
.++..+.-+..||.-++..|++..|+.+|..|++. +|....+++..|.+|..+|+-.-|+.-+.+.|++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence 45566677889999999999999999999999986 5788899999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHH------------HHHHHHHHHHHcCCh
Q 001110 277 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA------------SYHAIAIALSLMEAY 344 (1155)
Q Consensus 277 l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~------------a~~nLA~iy~~lGdy 344 (1155)
.|+...+...-|.++..+|++++|..-|.+.|...- ....... .+.....-+...|++
T Consensus 102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~-----s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP-----SNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC-----CcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence 578888999999999999999999999999887531 1111111 122233344456888
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcC
Q 001110 345 PLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKG 424 (1155)
Q Consensus 345 eeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qG 424 (1155)
..|+++....+++. +.+. ..+..-+..+....+...++.. .....+-..+-.+.++.++.+++..|
T Consensus 172 ~~ai~~i~~llEi~-----~Wda---~l~~~Rakc~i~~~e~k~AI~D------lk~askLs~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ-----PWDA---SLRQARAKCYIAEGEPKKAIHD------LKQASKLSQDNTEGHYKISQLLYTVG 237 (504)
T ss_pred hhHHHHHHHHHhcC-----cchh---HHHHHHHHHHHhcCcHHHHHHH------HHHHHhccccchHHHHHHHHHHHhhh
Confidence 88888888777662 2222 1111111111122222222221 11122222344566777777777777
Q ss_pred ChHHHHHHHHHHHHHh
Q 001110 425 RNVSTLKRKTYVAKVK 440 (1155)
Q Consensus 425 dyeeAle~yeKALeL~ 440 (1155)
+.+.++.-.+.+|++.
T Consensus 238 d~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 238 DAENSLKEIRECLKLD 253 (504)
T ss_pred hHHHHHHHHHHHHccC
Confidence 7777777776666654
No 122
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.42 E-value=2.9e-05 Score=93.06 Aligned_cols=225 Identities=16% Similarity=0.085 Sum_probs=156.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 001110 173 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 252 (1155)
Q Consensus 173 ~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~ 252 (1155)
.|..++-..++++|+..+ |..-..|..++..++..||...|...+.+|++. +|+.-.++..--.
T Consensus 563 hgt~Esl~Allqkav~~~--------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavK 626 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC--------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVK 626 (913)
T ss_pred cCcHHHHHHHHHHHHHhC--------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHH
Confidence 344444444444444432 233345666677788888988888888888875 3445556666667
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001110 253 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 332 (1155)
Q Consensus 253 iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~ 332 (1155)
+.+...+++.|..+|.+|... ..+..+|+.-+.+...+++.++|++++++||+.+ +.....|.
T Consensus 627 le~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~l 689 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWL 689 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHH
Confidence 778889999999999988763 2346778888999999999999999999999987 44567889
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHH
Q 001110 333 AIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDL 412 (1155)
Q Consensus 333 nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svael 412 (1155)
.+|+++.++++.+.|.+.|...+..+ +..+-.+..+..|..... ..-.+..+...... -.+....+
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~c-----P~~ipLWllLakleEk~~-~~~rAR~ildrarl--------kNPk~~~l 755 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKKC-----PNSIPLWLLLAKLEEKDG-QLVRARSILDRARL--------KNPKNALL 755 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccccC-----CCCchHHHHHHHHHHHhc-chhhHHHHHHHHHh--------cCCCcchh
Confidence 99999999999999999888777543 444444444443332221 12223333221111 12234455
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 413 LDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 413 L~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
|...-......|+.++|....-+||+-+++.+
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 65666667889999999999999999998865
No 123
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.40 E-value=2.1e-05 Score=84.75 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCC
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 322 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~ 322 (1155)
....++..|..++..|+|.+|+..|++.+..+ +.++....+.+.+|.++...|++++|+..|++-++.. +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 35678899999999999999999999988763 5678888999999999999999999999999998876 7
Q ss_pred CcHHHHHHHHHHHHHHHHcC-----------ChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001110 323 DHIQTAASYHAIAIALSLME-----------AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 391 (1155)
Q Consensus 323 dhp~~a~a~~nLA~iy~~lG-----------dyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~ 391 (1155)
.|+....+++.+|.++..+. ...+|+..|++.+..+ |+......+...+..+....
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~l-------- 140 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRL-------- 140 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHH--------
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHH--------
Confidence 78888899999999876543 2234555555444332 55666666666655544322
Q ss_pred hcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 001110 392 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 392 ~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
++--..+|..|.+.|+|..|+..++.+++-++..
T Consensus 141 ------------------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t 174 (203)
T PF13525_consen 141 ------------------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT 174 (203)
T ss_dssp ------------------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS
T ss_pred ------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC
Confidence 2223457777888888888888888777766554
No 124
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=4.9e-05 Score=82.61 Aligned_cols=190 Identities=15% Similarity=0.035 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
-+..+...+..|....+|++|...+.+|.+-++.. ..--..+.+|-..|.+...+..+.++..+|++|..++.+.
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~--- 104 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC--- 104 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---
Confidence 34555666777888899999999999999877654 2223356788889999999999999999999999999875
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
.+++.+..-..-|-=..+.-+.++|+++|++++.+++. +.........+..++.+|.+..+|++|-..+.+-..+..+
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~--~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE--DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 24555544444455556778899999999999999876 2223334567788899999999999999988887766655
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
.- ........+..+-.+|....||..|..+++...++
T Consensus 183 ~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 183 CD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred Hh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 42 12223334444455666677999999999887765
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=2.6e-05 Score=91.74 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~ 242 (1155)
.|..+..++..|++++|+..+...+.. +|.....+...+.++...++..+|++.+++++.+ .|.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~P~ 372 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------DPN 372 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCC
Confidence 344445555555555555555553322 3444445555555555555555555555555554 233
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHH
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 305 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deA 305 (1155)
......++|..|+..|++.+|+.++++.+. +.|+....|..||..|..+|+..+|
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHH
Confidence 344445555555555555555555554433 2334444555555555555554443
No 126
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.37 E-value=6.8e-05 Score=83.25 Aligned_cols=174 Identities=18% Similarity=0.164 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 280 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~ 280 (1155)
....++..|..++..|+|++|+..|++++..+ ++.+....+...||.+|+++++|++|+.+|++.+.. .+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cc
Confidence 45668889999999999999999999998864 445667778899999999999999999999999986 47
Q ss_pred CChhHHHHHHHHHHHHHHCC---------------C---hHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH----------
Q 001110 281 SHPNTAATYINVAMMEEGLG---------------N---VHVALRYLHKALKCNQRLLGPDHIQTAASYH---------- 332 (1155)
Q Consensus 281 dhp~~a~a~~nLA~iy~~lG---------------~---~deAle~lekALei~ek~lG~dhp~~a~a~~---------- 332 (1155)
+|+....+++.+|.++..++ + ..+|+..|++.++.+ +++.....+..
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 89999999999999875554 1 235666666666554 44443333333
Q ss_pred ----HHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCc
Q 001110 333 ----AIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 408 (1155)
Q Consensus 333 ----nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~s 408 (1155)
.+|..|.+.|+|..|+.-++..++- -++...
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~---------------------------------------------Yp~t~~ 210 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRD---------------------------------------------YPDTQA 210 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHH---------------------------------------------CCCCch
Confidence 3334444444444433333332221 112234
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHH
Q 001110 409 VSDLLDYINPSHDTKGRNVSTLKRKT 434 (1155)
Q Consensus 409 vaelL~~Lg~~y~~qGdyeeAle~ye 434 (1155)
..+.+..+...|..+|..++|..+..
T Consensus 211 ~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 211 TRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 66788889999999999999877664
No 127
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.37 E-value=2.4e-06 Score=74.99 Aligned_cols=96 Identities=36% Similarity=0.532 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 204 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 283 (1155)
Q Consensus 204 al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp 283 (1155)
+++.+|.++...|++++|+.++++++... +....++..+|.++...+++++|+++|++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 57889999999999999999999998862 2234678899999999999999999999998752 2
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 284 NTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 284 ~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
....++..+|.++...|++++|..++.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367889999999999999999999988764
No 128
>PLN03077 Protein ECB2; Provisional
Probab=98.35 E-value=8.1e-05 Score=96.47 Aligned_cols=27 Identities=4% Similarity=-0.054 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001110 410 SDLLDYINPSHDTKGRNVSTLKRKTYV 436 (1155)
Q Consensus 410 aelL~~Lg~~y~~qGdyeeAle~yeKA 436 (1155)
...|..|+.+|...|++++|.+..+..
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred cchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 346778899999999999998888644
No 129
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.35 E-value=0.00017 Score=86.72 Aligned_cols=213 Identities=10% Similarity=-0.017 Sum_probs=127.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001110 213 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 292 (1155)
Q Consensus 213 ~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nL 292 (1155)
+..|+..+-+..|.+|+.-..-... .-.....+..+|.+|...|+++.|...|++|...-- +.-.+++.+|++.
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~w 431 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAW 431 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHH
Confidence 3456666777777777664321111 112346778899999999999999999999987521 1234568999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHH----hcCCCcHHHH------HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHc
Q 001110 293 AMMEEGLGNVHVALRYLHKALKCNQR----LLGPDHIQTA------ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 362 (1155)
Q Consensus 293 A~iy~~lG~~deAle~lekALei~ek----~lG~dhp~~a------~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~l 362 (1155)
|.+.....+++.|+.+.++|...-.. .+...++-.+ .+|..++.+....|-++.-...|.+.+++.
T Consensus 432 aemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr---- 507 (835)
T KOG2047|consen 432 AEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR---- 507 (835)
T ss_pred HHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh----
Confidence 99999999999999999998864322 2222233222 334445555555565555555555555542
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHH---HHHcCChHHHHHHHHHHHHH
Q 001110 363 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPS---HDTKGRNVSTLKRKTYVAKV 439 (1155)
Q Consensus 363 G~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~---y~~qGdyeeAle~yeKALeL 439 (1155)
..+-....+.+.+.....-..+++..+....... ..+.+.+++...=.. -+...+.+.|..+|++||+.
T Consensus 508 ----iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF----k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 508 ----IATPQIIINYAMFLEEHKYFEESFKAYERGISLF----KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred ----cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC----CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1222333344444444444444444333332211 123455555432221 13345677899999999997
Q ss_pred hhhh
Q 001110 440 KGNF 443 (1155)
Q Consensus 440 ~~kl 443 (1155)
++-.
T Consensus 580 Cpp~ 583 (835)
T KOG2047|consen 580 CPPE 583 (835)
T ss_pred CCHH
Confidence 7643
No 130
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.34 E-value=3.6e-06 Score=73.88 Aligned_cols=96 Identities=34% Similarity=0.471 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
.++.+|..++..|++++|+.+++++++.. +....++..+|.++...+++++|+.++++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 46778999999999999999999998762 3334788999999999999999999999998863 2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
....++..+|.++..+|++++|..++.+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 23367899999999999999999999998764
No 131
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.29 E-value=1.2e-05 Score=98.34 Aligned_cols=138 Identities=15% Similarity=0.066 Sum_probs=106.8
Q ss_pred ChHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCH--------HHHHHH
Q 001110 156 SSADGRQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF--------NQATIY 224 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~Gd---yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gdy--------deAle~ 224 (1155)
....+..++..|..++..++ +..|+.+|++|+++ +|..+.+|..|+.+|.....+ ..+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34467778888888887665 78999999999988 788888999888888654332 233333
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHH
Q 001110 225 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 304 (1155)
Q Consensus 225 ~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~de 304 (1155)
.++++.+ ...+....+|..+|..+...|++++|..+|++|+++ .+. +.+|..+|.++...|++++
T Consensus 407 ~~~a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 407 LDNIVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred HHHhhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHH
Confidence 3333332 113334578888999999999999999999999996 233 6789999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001110 305 ALRYLHKALKCN 316 (1155)
Q Consensus 305 Ale~lekALei~ 316 (1155)
|+++|++|+.+.
T Consensus 472 A~~~~~~A~~L~ 483 (517)
T PRK10153 472 AADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 132
>PLN03077 Protein ECB2; Provisional
Probab=98.28 E-value=7.3e-05 Score=96.90 Aligned_cols=237 Identities=9% Similarity=-0.027 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----------
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI---------- 231 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei---------- 231 (1155)
.+..+...|...|++++|.++|++... + ...+|+.|...|.+.|++++|+.+|++....
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMET----------K-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----------C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 444555667777888888777765321 1 1335777777777788888887777754321
Q ss_pred ------------------HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001110 232 ------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 293 (1155)
Q Consensus 232 ------------------~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA 293 (1155)
.+............+++.|...|.+.|++++|++.|++... ++ ..+|+.+.
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d----~vs~~~mi 462 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-------KD----VISWTSII 462 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-------CC----eeeHHHHH
Confidence 00000001111234566677777778888877777764211 11 12344444
Q ss_pred HHHHHCCChHHHHHHHHHHHHH----------------------------------------------------------
Q 001110 294 MMEEGLGNVHVALRYLHKALKC---------------------------------------------------------- 315 (1155)
Q Consensus 294 ~iy~~lG~~deAle~lekALei---------------------------------------------------------- 315 (1155)
..|...|++++|+.+|++.+..
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 4444445555554444443310
Q ss_pred ----HHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001110 316 ----NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 391 (1155)
Q Consensus 316 ----~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~ 391 (1155)
+... .....+|..+...|...|+.++|+++|++..+. -..++.......+.. +...+..+.+..+.
T Consensus 543 A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~~T~~~ll~a--~~~~g~v~ea~~~f 612 (857)
T PLN03077 543 AWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES---GVNPDEVTFISLLCA--CSRSGMVTQGLEYF 612 (857)
T ss_pred HHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCcccHHHHHHH--HhhcChHHHHHHHH
Confidence 0000 012345777788888888888888888875532 223443332222221 22223333333322
Q ss_pred hcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001110 392 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 436 (1155)
Q Consensus 392 ~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKA 436 (1155)
..... ..... .-.+.|..+..+|.+.|++++|.+++++.
T Consensus 613 ~~M~~-----~~gi~-P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 613 HSMEE-----KYSIT-PNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHH-----HhCCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 21100 00001 12356888899999999999999999763
No 133
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=0.00016 Score=88.36 Aligned_cols=288 Identities=15% Similarity=0.087 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHHHHHhcCCCChh---------
Q 001110 176 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA----LDINERELGLDHPD--------- 242 (1155)
Q Consensus 176 yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKA----Lei~er~lG~D~p~--------- 242 (1155)
+-++...+.+|+++.+. .+....-.+|++.|.-+...+|.+.|++||+|+ .++.+-+ .. .|.
T Consensus 835 lyQs~g~w~eA~eiAE~---~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~e-~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAET---KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-KE-YPKQIEQYVRRK 909 (1416)
T ss_pred HHHhcccHHHHHHHHhh---ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-Hh-ChHHHHHHHHhc
Confidence 33333344444444432 233445678999999999999999999999986 2222111 11 111
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----cCCCC--------hhHHHHHHHHHHHHHHCCChHHHHHH
Q 001110 243 -TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT-----CGPSH--------PNTAATYINVAMMEEGLGNVHVALRY 308 (1155)
Q Consensus 243 -~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l-----~G~dh--------p~~a~a~~nLA~iy~~lG~~deAle~ 308 (1155)
.-..|.-.|..+...|+.+.|+.+|..|-+.+... .|.-+ .....+.+.||..|...|++.+|+.+
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 12455667888999999999999999988765431 12111 11134567899999999999999999
Q ss_pred HHHHHHH------HHHhcCCCcHHHH------HHHHHHHHHHHHcC-ChhHHHHHHHHH------------------HHH
Q 001110 309 LHKALKC------NQRLLGPDHIQTA------ASYHAIAIALSLME-AYPLSVQHEQTT------------------LQI 357 (1155)
Q Consensus 309 lekALei------~ek~lG~dhp~~a------~a~~nLA~iy~~lG-dyeeAle~lkkA------------------LeI 357 (1155)
|.+|-.. +++..-.+..... .-+...|.+|...| ++..|..+|.+| |++
T Consensus 990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 9876543 3221000000000 01223344555555 556666655442 333
Q ss_pred HHHHcCC-CCHHHHH-HHHHHH---------HHHHHhHHHHHHHHhc--CCCCc---------hhh-hhcCCCcHHHHHH
Q 001110 358 LRAKLGP-DDLRTQD-AAAWLE---------YFESKAFEQQEAARNG--TRKPD---------ASI-ASKGHLSVSDLLD 414 (1155)
Q Consensus 358 ~kk~lG~-dh~~t~~-al~~La---------~l~qk~~e~AeAi~~~--~~~~~---------~~~-a~~~~~svaelL~ 414 (1155)
..+-+++ .++..+. +..... .+.....+...++... ..-.- ... .........+++.
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence 3333333 2343321 111111 0111111122222211 11100 000 0111224567999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHH---hhhhcCCCCCCCCCCcchhHhhhcccccccCCCCC
Q 001110 415 YINPSHDTKGRNVSTLKRKTYVAKV---KGNFYQDNNLTSPDGSSKEVLRESSDEETHAPEPE 474 (1155)
Q Consensus 415 ~Lg~~y~~qGdyeeAle~yeKALeL---~~kl~~e~~t~~~~Ia~~E~~~E~~ekek~I~el~ 474 (1155)
.+|.++.++|.|..|-+-|.+|=.. .+.+. ++-+ .++.+.+....++++|-.+-
T Consensus 1150 qvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLL-----KSGd-t~KI~FFAn~sRqkEiYImA 1206 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFTQAGDKLSAMRALL-----KSGD-TQKIRFFANTSRQKEIYIMA 1206 (1416)
T ss_pred HHHHHHHhccchHHHHHHHhhhhhHHHHHHHHH-----hcCC-cceEEEEeeccccceeeeeh
Confidence 9999999999999999999876322 22222 0101 24445566666777776654
No 134
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.25 E-value=4.5e-06 Score=73.45 Aligned_cols=65 Identities=29% Similarity=0.543 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYL 273 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG-~yeeAle~yekALei 273 (1155)
.+.+|..+|.+++.+|+|++|+.+|.+|+++ +|....+++++|.+|..+| ++++|+++|++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999998 4777889999999999999 799999999999986
No 135
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.24 E-value=0.00031 Score=87.84 Aligned_cols=218 Identities=14% Similarity=0.074 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 204 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 283 (1155)
Q Consensus 204 al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp 283 (1155)
.|.|+|.++....+++.|...|.++..+ .|.....+...|.+....|+.-+++..|...-++.... ...
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~---gka 920 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKE---GKA 920 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc---ccc
Confidence 3444444444444444444444444333 34444555555555556665555555555543332111 111
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHH--HHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 284 NTAATYINVAMMEEGLGNVHVALRYLHKAL--KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 284 ~~a~a~~nLA~iy~~lG~~deAle~lekAL--ei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
.-...+.+--.+....|++++-+..-+++- .+....+-..+++...+|...|.....++.|.+|.+.+.+.+.+++..
T Consensus 921 ~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k 1000 (1238)
T KOG1127|consen 921 KKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELK 1000 (1238)
T ss_pred chhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233444455566666666555554432 122222334577888899999999999999999999999999999888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 362 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 362 lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
+..+...+........++..+.++.+..... .... .+.+-.........-+++|++++++|++|+.+..
T Consensus 1001 ~d~sqynvak~~~gRL~lslgefe~A~~a~~--~~~~---------evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~ 1069 (1238)
T KOG1127|consen 1001 LDESQYNVAKPDAGRLELSLGEFESAKKASW--KEWM---------EVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISN 1069 (1238)
T ss_pred HhhhhhhhhhhhhhhhhhhhcchhhHhhhhc--ccch---------hHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 7766554433333333333344443322111 1100 1111111112222568999999999999999876
Q ss_pred hh
Q 001110 442 NF 443 (1155)
Q Consensus 442 kl 443 (1155)
+.
T Consensus 1070 se 1071 (1238)
T KOG1127|consen 1070 SE 1071 (1238)
T ss_pred cc
Confidence 53
No 136
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.24 E-value=0.00059 Score=83.87 Aligned_cols=260 Identities=15% Similarity=0.099 Sum_probs=170.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 001110 165 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 244 (1155)
Q Consensus 165 ~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a 244 (1155)
.....+.-+.+.++++.+.-..+...+.. .-.+.+..|..|.......|+|..+.+.|++++... ....
T Consensus 289 li~es~i~Re~~~d~ilslm~~~~k~r~~---~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--------~~~~ 357 (799)
T KOG4162|consen 289 LIEESLIPRENIEDAILSLMLLLRKLRLK---KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--------FGEH 357 (799)
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHh---hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--------hhhH
Confidence 33445666777788877766655543322 112445678889999999999999999999998763 3345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCc
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 324 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dh 324 (1155)
..|+.++..|...|.-..|+..+++.+...+ ...+....+..-..++...+.+++++.|..+|+..+.. ...
T Consensus 358 e~w~~~als~saag~~s~Av~ll~~~~~~~~-----~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~---~~~ 429 (799)
T KOG4162|consen 358 ERWYQLALSYSAAGSDSKAVNLLRESLKKSE-----QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGG---QRS 429 (799)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhccccc-----CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh---hhh
Confidence 6788999999999999999999988876532 11223333444456677889999999999999997632 333
Q ss_pred HHHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCc
Q 001110 325 IQTAASYHAIAIALSLM----EAYPLSVQHEQTTLQILRAK--LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 398 (1155)
Q Consensus 325 p~~a~a~~nLA~iy~~l----GdyeeAle~lkkALeI~kk~--lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~ 398 (1155)
.....++..+|.+|..+ ....+-..+.+++++.+++. +++.++.. ..++++.+....+...|+........
T Consensus 430 ~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~---if~lalq~A~~R~l~sAl~~~~eaL~ 506 (799)
T KOG4162|consen 430 HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV---IFYLALQYAEQRQLTSALDYAREALA 506 (799)
T ss_pred hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH---HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44667888888888643 33334444555555555443 35555533 33333333222222222222111111
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhcCCCCCCC
Q 001110 399 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTS 451 (1155)
Q Consensus 399 ~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~~e~~t~~ 451 (1155)
. +.-.....|+.++.+...++++.+|+...+-++.-+..+++.-.++.
T Consensus 507 --l---~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 507 --L---NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred --h---cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 0 01245668999999999999999999999999999988775444443
No 137
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=1.5e-05 Score=96.90 Aligned_cols=220 Identities=12% Similarity=0.090 Sum_probs=126.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 001110 164 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 243 (1155)
Q Consensus 164 l~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~ 243 (1155)
..++..++..|-..+|+..|++. ..|.....||...|+..+|..+.++-++ .+..
T Consensus 402 ~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~le---------k~~d 456 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELE---------KDPD 456 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhc---------CCCc
Confidence 34466667777777776666553 2445566677777777777776665544 1334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCC
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 323 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~d 323 (1155)
...|..||.+....- +|++|.++.... .+.+...+|......++|.+|.++++.++++.
T Consensus 457 ~~lyc~LGDv~~d~s-------~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n------- 515 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPS-------LYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN------- 515 (777)
T ss_pred chhHHHhhhhccChH-------HHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC-------
Confidence 455555665554443 444444443221 23344555666666788888888888888765
Q ss_pred cHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhh
Q 001110 324 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 403 (1155)
Q Consensus 324 hp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~ 403 (1155)
+....+|+.+|.+..+.++++.|.++|..++.+ .++|...+..+. ..+....+..++......+....
T Consensus 516 -plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-----~Pd~~eaWnNls---~ayi~~~~k~ra~~~l~EAlKcn--- 583 (777)
T KOG1128|consen 516 -PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-----EPDNAEAWNNLS---TAYIRLKKKKRAFRKLKEALKCN--- 583 (777)
T ss_pred -ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-----CCCchhhhhhhh---HHHHHHhhhHHHHHHHHHHhhcC---
Confidence 445677788888888888888888888777754 566654443332 22222222222222111111100
Q ss_pred cCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 404 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 404 ~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
..+ -.++.+.-.+....|.+++|++.|.+.+.+...-.
T Consensus 584 ~~~---w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 584 YQH---WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred CCC---CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 001 12233344455788999999999999888776644
No 138
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.8e-05 Score=91.45 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-------RMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 230 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~-------p~~A~al~nLG~vy~~~GdydeAle~~eKALe 230 (1155)
..+...-+.|..|++.|+|..|...|.+|+..+....+-+. .....++.|||.||..+++|.+|+.++.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 34666778899999999999999999999998764322221 12345788999999999999999999999998
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 001110 231 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 299 (1155)
Q Consensus 231 i~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l 299 (1155)
+ .+....+++.-|.+|..+|+|+.|+..|++++++ .|..-.+...|..+....
T Consensus 286 ~--------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 286 L--------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKI 338 (397)
T ss_pred c--------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHH
Confidence 6 4667888999999999999999999999999986 233344444555554433
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.21 E-value=6e-06 Score=72.61 Aligned_cols=65 Identities=29% Similarity=0.492 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHH
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKALKC 315 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG-~~deAle~lekALei 315 (1155)
.+.++..+|.+++.+|+|++|+.+|.+++.+ +|....+++++|.+|..+| ++++|+.+|++|+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999997 5677889999999999999 799999999999986
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.00018 Score=78.90 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=119.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 001110 173 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 252 (1155)
Q Consensus 173 ~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~ 252 (1155)
..+-++-++++.+.+.....- ...++....|-.+..+....|+.+-|..++++...-+ |........-|.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam 94 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAM 94 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHH
Confidence 345566677777666554332 1234455677777888888999999998888765542 333344455688
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001110 253 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 332 (1155)
Q Consensus 253 iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~ 332 (1155)
.+...|+|++|+++|...++ ++|....++-.--.+...+|+.-+|++.+.+-++.+ .....+|.
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~ 158 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWH 158 (289)
T ss_pred HHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHH
Confidence 89999999999999998876 456666667666677788899899999999888876 33457899
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 333 AIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 333 nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
.|+.+|...|+|++|.-+|++.+-+
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 9999999999999999999988744
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.19 E-value=3.2e-05 Score=98.44 Aligned_cols=224 Identities=7% Similarity=-0.059 Sum_probs=160.2
Q ss_pred cCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 194 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 194 ~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
.+...+....++..|..+|...+++++|+..++.+++. +|+....|+.+|.+|+..+++.+|.-. .++.+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 34567888999999999999999999999999988875 577888999999999999999888655 55554
Q ss_pred HHHhc-----------CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 001110 274 LHLTC-----------GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 342 (1155)
Q Consensus 274 ~e~l~-----------G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lG 342 (1155)
..... -.+++..-.+++.||.||..+|++++|...|+++|++. +..+.++.++|..|...
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-
Confidence 32210 00123334688999999999999999999999999874 55678899999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHH
Q 001110 343 AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT 422 (1155)
Q Consensus 343 dyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~ 422 (1155)
++++|++++.+|+..+-..- ........+.-+.......++.-..+...... ........+++.-|-..|..
T Consensus 164 dL~KA~~m~~KAV~~~i~~k--q~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~------~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKKK--QYVGIEEIWSKLVHYNSDDFDFFLRIERKVLG------HREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred hHHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHhcCcccchHHHHHHHHHHh------hhccchhHHHHHHHHHHHhh
Confidence 99999999999998754321 11122222222222111112211111111000 00122456777788888999
Q ss_pred cCChHHHHHHHHHHHHHhhhhc
Q 001110 423 KGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 423 qGdyeeAle~yeKALeL~~kl~ 444 (1155)
.++|++++.+++.+|++.++..
T Consensus 236 ~~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 236 LEDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred hhhhhHHHHHHHHHHhcCCcch
Confidence 9999999999999999988754
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.18 E-value=9.3e-06 Score=74.71 Aligned_cols=84 Identities=26% Similarity=0.316 Sum_probs=66.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 001110 172 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 251 (1155)
Q Consensus 172 ~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA 251 (1155)
++|+|++|+.+|+++++.... .+ ....++.||.+|+.+|+|++|+.++++ +.+. +....+...+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 468999999999999988421 22 455777899999999999999999998 4432 33456677789
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 001110 252 VFYYRLQHTELALKYVKRA 270 (1155)
Q Consensus 252 ~iy~~lG~yeeAle~yekA 270 (1155)
.+++.+|+|++|+++|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 143
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.18 E-value=0.0005 Score=68.66 Aligned_cols=173 Identities=27% Similarity=0.285 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
.......+..+...+++..+...+..++.. .........+..++..+...+++..|+..+.+++.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 127 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----- 127 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----
Confidence 445566677888899999999998888764 124556778888999999999999999998888875211
Q ss_pred ChhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAV-FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 240 ~p~~a~ay~nLA~-iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
. .......+. ++...|+++.|..+|.+++.. .+........+..++..+...++++.|+..+.+++.....
T Consensus 128 -~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 128 -P--DLAEALLALGALYELGDYEEALELYEKALEL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred -c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 1 222333344 899999999999999999552 1101234566667777788899999999999999987632
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
. ....+..++..+...+++..|...+.+++...
T Consensus 200 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 200 D-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred c-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 1 45667888999999999999999988888663
No 144
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.17 E-value=0.00053 Score=79.21 Aligned_cols=244 Identities=18% Similarity=0.076 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+......|..-+..|+|.+|+.+..++-+. .+.-..+|..-+.+-..+||++.|-.|+.+|-+.. +
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~ 149 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------G 149 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------C
Confidence 556666777888899999999998886544 33344566677788899999999999999987752 1
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH----
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC---- 315 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei---- 315 (1155)
......+...+.++..+|+++.|..-..++++. ++.|+ ..+.-...+|...|+|.+.+.++.+.-+-
T Consensus 150 -~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----~pr~~---~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~ 220 (400)
T COG3071 150 -DDTLAVELTRARLLLNRRDYPAARENVDQLLEM-----TPRHP---EVLRLALRAYIRLGAWQALLAILPKLRKAGLLS 220 (400)
T ss_pred -CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----CcCCh---HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC
Confidence 234556778899999999999999999888875 34444 44555677888889888877776533221
Q ss_pred ---------------HHHhcCCC-cH--------------HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCC
Q 001110 316 ---------------NQRLLGPD-HI--------------QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 365 (1155)
Q Consensus 316 ---------------~ek~lG~d-hp--------------~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~d 365 (1155)
.++....+ .. ....+...++.-+..+|++++|.+..+++++- . .
T Consensus 221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~---~---~ 294 (400)
T COG3071 221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR---Q---W 294 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh---c---c
Confidence 01110000 00 01223344677778899999999988887753 1 2
Q ss_pred CHHHHHHHHHHHHHHHHhHH-HHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 366 DLRTQDAAAWLEYFESKAFE-QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 366 h~~t~~al~~La~l~qk~~e-~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
++. ....+..+.-+... ..+.+.. ....|+.-..++..||..|.+.+.+.+|..+|+.|++..++..
T Consensus 295 D~~---L~~~~~~l~~~d~~~l~k~~e~---------~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 295 DPR---LCRLIPRLRPGDPEPLIKAAEK---------WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred Chh---HHHHHhhcCCCCchHHHHHHHH---------HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh
Confidence 222 11112222111111 1111111 0111223336788899999999999999999998888877655
No 145
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2e-05 Score=91.15 Aligned_cols=106 Identities=23% Similarity=0.264 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001110 203 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 275 (1155)
Q Consensus 203 ~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p-------~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e 275 (1155)
.....-|..|+..|+|..|...|++|+..+....+.+.. ....++.|||.||.++++|.+|++++.++|.+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 345567899999999999999999999987654333321 23467899999999999999999999999986
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 276 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 276 ~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.+....+++.-|.+|..+|+|+.|+..|++|+++.
T Consensus 287 ------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 287 ------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred ------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 45568899999999999999999999999999985
No 146
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.16 E-value=0.0023 Score=77.63 Aligned_cols=190 Identities=17% Similarity=0.082 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTK------ALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD--- 230 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~e------ALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALe--- 230 (1155)
+..+-..|.+|-...++++|+++|++ |+++.+-.+ .......-...|.-+...|+++.|+.+|-+|-.
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 44444556677777888999988765 444443332 223334445567777788899998887755422
Q ss_pred ----------------HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHHHHH
Q 001110 231 ----------------INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR-------------------ALYLLH 275 (1155)
Q Consensus 231 ----------------i~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yek-------------------ALei~e 275 (1155)
+.+.+ .|.......|..+|.-|...|+|+.|.++|.+ |..+..
T Consensus 738 aieaai~akew~kai~ildni--qdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNI--QDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHh--hhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHH
Confidence 22211 11112223455677777788888887776643 223333
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHH------HHHHHHHHHhc---------CCCcHH-HHHHHHHHHHHHH
Q 001110 276 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL------HKALKCNQRLL---------GPDHIQ-TAASYHAIAIALS 339 (1155)
Q Consensus 276 ~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~l------ekALei~ek~l---------G~dhp~-~a~a~~nLA~iy~ 339 (1155)
+..|+ ..+...|...|.-+...|+|.+|.++| .+|+.++.+.. +..|+. .......+|.-|.
T Consensus 816 e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e 893 (1636)
T KOG3616|consen 816 ECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELE 893 (1636)
T ss_pred HhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHH
Confidence 33332 345667777888888999998888877 46666665431 112222 2345667888888
Q ss_pred HcCChhHHHHHHHHHHH
Q 001110 340 LMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 340 ~lGdyeeAle~lkkALe 356 (1155)
..|++..|..+|.+|-+
T Consensus 894 ~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 894 AEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred hccChhHHHHHHHhhhh
Confidence 88888888887766543
No 147
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.16 E-value=3.1e-05 Score=76.98 Aligned_cols=102 Identities=27% Similarity=0.235 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 203 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 203 ~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dh 282 (1155)
.+++.+|.++..+|+.++|+.+|++|+.. |.+......++..+|..|..+|++++|+..+++++.-+ +++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46789999999999999999999999884 55666778899999999999999999999999987631 333
Q ss_pred hhHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001110 283 PNTAATYINVAMMEEGLGNVHVALRYLHKALK 314 (1155)
Q Consensus 283 p~~a~a~~nLA~iy~~lG~~deAle~lekALe 314 (1155)
+........+|.++...|++++|+..+..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33556667789999999999999999988775
No 148
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.15 E-value=3.5e-05 Score=86.49 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=90.3
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCC
Q 001110 245 KSYGDLAVFY-YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 323 (1155)
Q Consensus 245 ~ay~nLA~iy-~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~d 323 (1155)
...+..|..+ +..|+|++|+..|++.+..+ ++++....+++.+|.+|+..|++++|+.+|+++++.+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4556666655 66799999999999998863 5566667899999999999999999999999999876 77
Q ss_pred cHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 324 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 324 hp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
++....+++.+|.+|..+|++++|...|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999888653
No 149
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.15 E-value=4e-05 Score=86.05 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=90.4
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 203 GAYSLLAVVL-YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 281 (1155)
Q Consensus 203 ~al~nLG~vy-~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d 281 (1155)
..++..|..+ +..|+|++|+..|++.+..+ +++.....+++.||.+|+..|+|++|+.+|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4566666655 56799999999999999875 4455667899999999999999999999999998853 67
Q ss_pred ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 282 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 282 hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
++....+++.+|.+|..+|++++|..+|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999998875
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.14 E-value=1.3e-05 Score=73.69 Aligned_cols=83 Identities=25% Similarity=0.386 Sum_probs=65.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001110 215 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 294 (1155)
Q Consensus 215 ~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~ 294 (1155)
+|+|++|+.++++++..... .+ ....+..+|.+|+.+|+|++|+.++++ +.+ .+....+.+.+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence 68999999999999997421 22 455677799999999999999999998 433 2334566677899
Q ss_pred HHHHCCChHHHHHHHHHH
Q 001110 295 MEEGLGNVHVALRYLHKA 312 (1155)
Q Consensus 295 iy~~lG~~deAle~lekA 312 (1155)
++..+|++++|+.+|++|
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
No 151
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.12 E-value=3.7e-05 Score=76.42 Aligned_cols=102 Identities=26% Similarity=0.209 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCc
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 324 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dh 324 (1155)
.+.+++|.++-.+|+.++|+.+|++++.. |.+.+....+++.+|..|..+|++++|+..+++++.-. ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 35788999999999999999999999983 55667778899999999999999999999999988643 332
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 325 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 325 p~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
.........++.++...|++++|+..+..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445556688999999999999999877663
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0019 Score=71.11 Aligned_cols=164 Identities=17% Similarity=0.122 Sum_probs=122.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~ 242 (1155)
+-......+..|+.+.|..++++..+.+ |..-+....-|..+...|.+++|+++|...|+ |+|.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--------ddpt 118 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--------DDPT 118 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--------cCcc
Confidence 3344556678899999998888765542 33445666778888889999999999887765 3455
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCC
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 322 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~ 322 (1155)
...+|-.--.+...+|+.-+|++.+..-++.+ +....+|..++.+|...|+|++|.-+|++.+-+.
T Consensus 119 ~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~------ 184 (289)
T KOG3060|consen 119 DTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ------ 184 (289)
T ss_pred hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC------
Confidence 55555555566778899889998888877764 2236789999999999999999999999988653
Q ss_pred CcHHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHH
Q 001110 323 DHIQTAASYHAIAIALSLME---AYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 323 dhp~~a~a~~nLA~iy~~lG---dyeeAle~lkkALeI~ 358 (1155)
|.....+..+|.+++-+| ++.-|..||.+|+++.
T Consensus 185 --P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 185 --PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred --CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 334455666777776554 6778999999999874
No 153
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.07 E-value=0.00016 Score=87.20 Aligned_cols=172 Identities=19% Similarity=0.201 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..++.+.-.|..+...|+-++|..+...++.. ++....||+.+|.+++...+|++|+.+|+.|+.+
T Consensus 39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~------ 104 (700)
T KOG1156|consen 39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI------ 104 (700)
T ss_pred ccchhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc------
Confidence 34667777888999999999999999988864 4555679999999999999999999999999997
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.++...++..|+.+...+++|+-....-.+.+++ .|..-..|...|..+...|++..|...++.-.....
T Consensus 105 --~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 105 --EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred --CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667889999999999999999888777776664 355566788999999999999999998887766554
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 353 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkk 353 (1155)
............+......++...|.+++|++++.+
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 222222233344555566677788888888777654
No 154
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00015 Score=80.48 Aligned_cols=162 Identities=18% Similarity=0.152 Sum_probs=117.8
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 001110 171 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 250 (1155)
Q Consensus 171 l~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nL 250 (1155)
....+|.+|++++.--.+ ..+.....+..||.||+...+|..|.++|.+...+ +|........-
T Consensus 21 I~d~ry~DaI~~l~s~~E--------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELE--------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 455678888877654433 35666778999999999999999999999987665 56666666667
Q ss_pred HHHHHHcCCHHHHHHHHHH----------HHHHHHHh-cCCC-------------ChhHHHHHHHHHHHHHHCCChHHHH
Q 001110 251 AVFYYRLQHTELALKYVKR----------ALYLLHLT-CGPS-------------HPNTAATYINVAMMEEGLGNVHVAL 306 (1155)
Q Consensus 251 A~iy~~lG~yeeAle~yek----------ALei~e~l-~G~d-------------hp~~a~a~~nLA~iy~~lG~~deAl 306 (1155)
|..++..+.+.+|+..... ++++...+ +..+ ....+...++.|.+.++.|+|+.|.
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 7777888888887765433 33322111 0000 1245778899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 307 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 307 e~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
+-|+.|++.. .-.+ ..-+++|.++++.|+++.|+++..+.++
T Consensus 165 qkFqaAlqvs-----Gyqp---llAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 165 QKFQAALQVS-----GYQP---LLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHHHHhhc-----CCCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999864 2223 3456899999999999999998776654
No 155
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00051 Score=84.12 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=105.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 001110 169 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 248 (1155)
Q Consensus 169 ~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~ 248 (1155)
+....|.+++|+.+|.++-+ |-.|-.+|..+|.+++|.+. ++. .|...+-.+|+
T Consensus 809 LAieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~ei-------AE~---~DRiHLr~Tyy 862 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEI-------AET---KDRIHLRNTYY 862 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHH-------Hhh---ccceehhhhHH
Confidence 34455556666665555432 23344556666666655543 332 34556678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----HHHHHHhcCCCChhH----------HHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001110 249 DLAVFYYRLQHTELALKYVKRA----LYLLHLTCGPSHPNT----------AATYINVAMMEEGLGNVHVALRYLHKALK 314 (1155)
Q Consensus 249 nLA~iy~~lG~yeeAle~yekA----Lei~e~l~G~dhp~~----------a~a~~nLA~iy~~lG~~deAle~lekALe 314 (1155)
+.|..+...++.+.|++||+++ .++.+.+. +.|.. -..|...|..+...|+.+.|+.+|..|-+
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~--e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK--EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH--hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 9999999999999999999985 33332221 12211 23466678899999999999999999887
Q ss_pred HHHHh-----cCCCcH--------HHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 315 CNQRL-----LGPDHI--------QTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 315 i~ek~-----lG~dhp--------~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
.+-.. .|.-.. ....+.|.||+.|...|++.+|+.+|.+|-.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 65432 121110 1123567899999999999999999887643
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.00 E-value=0.00012 Score=89.56 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH--------HHHHHHHHH
Q 001110 201 TAGAYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT--------ELALKYVKR 269 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~Gd---ydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~y--------eeAle~yek 269 (1155)
.+.-++..|.-|...++ +..|+.+|++|+++ +|+.+.+|..++.+|.....+ ..|.+..++
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34455666777766554 78999999999997 578888888888887665333 233333333
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHH
Q 001110 270 ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 349 (1155)
Q Consensus 270 ALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle 349 (1155)
++.+ ...+....++.-+|.++...|++++|..+|++|+++. + .+.+|..+|.++...|++++|++
T Consensus 410 a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 410 IVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred hhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 3322 1123335678888999999999999999999999975 2 25689999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHH
Q 001110 350 HEQTTLQILRAKLGPDDLR 368 (1155)
Q Consensus 350 ~lkkALeI~kk~lG~dh~~ 368 (1155)
+|++|+.+ .+.++.
T Consensus 475 ~~~~A~~L-----~P~~pt 488 (517)
T PRK10153 475 AYSTAFNL-----RPGENT 488 (517)
T ss_pred HHHHHHhc-----CCCCch
Confidence 99999965 676663
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=98.00 E-value=0.00023 Score=84.28 Aligned_cols=163 Identities=13% Similarity=0.044 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhc---------CCHHHHHHHHHHHH
Q 001110 162 QLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---------GDFNQATIYQQKAL 229 (1155)
Q Consensus 162 ~Ll~lG~~yl~~Gd---yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~---------GdydeAle~~eKAL 229 (1155)
.++..|...+..+. .+.|+.+|.+|+... ..+|..+.+|..+|.+|+.. .+..+|.++.++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 56777777766554 456778888888321 23788899999999998764 23456666777777
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHH
Q 001110 230 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 309 (1155)
Q Consensus 230 ei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~l 309 (1155)
++ ++..+.++..+|.++...++++.|...|++|+.+ +|..+.+++..|.+....|+.++|++++
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 65 4566889999999999999999999999999986 6788999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHHcCChhHHHHHHHH
Q 001110 310 HKALKCNQRLLGPDHIQTAASYHAIAI-ALSLMEAYPLSVQHEQT 353 (1155)
Q Consensus 310 ekALei~ek~lG~dhp~~a~a~~nLA~-iy~~lGdyeeAle~lkk 353 (1155)
++|+++. + ...+.....+.. .| .-.-.++|+.+|-+
T Consensus 396 ~~alrLs-----P--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLE-----P--RRRKAVVIKECVDMY-VPNPLKNNIKLYYK 432 (458)
T ss_pred HHHhccC-----c--hhhHHHHHHHHHHHH-cCCchhhhHHHHhh
Confidence 9999875 1 122333333444 33 34567778776643
No 158
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.97 E-value=0.00029 Score=70.33 Aligned_cols=102 Identities=24% Similarity=0.219 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
.+.+-..|..+...|+++.|++.|.+++.++ |..+.+|++.+..|..+|+.++|++-+.+|+++. |..
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 3455556778889999999999999999984 7788999999999999999999999999999985 444
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
....+.+|...|.+|..+|+.+.|..-|+.|-++
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 4566789999999999999999999999998875
No 159
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=0.00051 Score=81.11 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=110.4
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
+....+.+..|..++..|++++|+..++..+.. .|+........+.++.+.++.++|++.+++++.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----- 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL----- 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 345668899999999999999999999985543 5677777888999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 279 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
.|.......++|.+|...|++.+|+..+++.+.- .+.....|..||+.|..+|+..+|...+.+.+.
T Consensus 370 ---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 370 ---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred ---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3555667889999999999999999999887653 244567788889999988888888776655543
No 160
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.91 E-value=0.0014 Score=72.49 Aligned_cols=174 Identities=18% Similarity=0.209 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..|+..|...++.|+|++|+..|+..... .+..+..-.+...++.+++..+++++|+.+..+-+.++ +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 678999999999999999999999887643 14456667889999999999999999999999998875 66
Q ss_pred ChhhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChhH--------------HHHHHHHHHHHHHCC
Q 001110 240 HPDTMKSYGDLAVFYYRLQ-----HTELALKYVKRALYLLHLTCGPSHPNT--------------AATYINVAMMEEGLG 300 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG-----~yeeAle~yekALei~e~l~G~dhp~~--------------a~a~~nLA~iy~~lG 300 (1155)
|++...+++..|.+++..= +..-+...+...-++..+. ++.+.. +.--..+|..|.+.|
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888899999998887642 2333333333333332221 332222 222356789999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHH
Q 001110 301 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 350 (1155)
Q Consensus 301 ~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~ 350 (1155)
.+--|+..+++.++-+ .+...+-.++..|..+|..+|-.++|...
T Consensus 182 ~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 182 AYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred ChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999999999998876 34455667788899999999999998763
No 161
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.001 Score=75.52 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..-+++|.+++..|+|++|+..|.-+... +.-.+..+.+||.+++.+|.|.+|.....+| .+.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka---------~k~ 120 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNK--------DDAPAELGVNLACCKFYLGQYIEAKSIAEKA---------PKT 120 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhcc--------CCCCcccchhHHHHHHHHHHHHHHHHHHhhC---------CCC
Confidence 44566788888899999888888766542 1223567788888888888888888776665 223
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
|.....+++++. ++++-++-+ .|...|. ++..-...||.+.+..-+|++|++.|.+.|.-.
T Consensus 121 pL~~RLlfhlah---klndEk~~~-~fh~~Lq-----------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn---- 181 (557)
T KOG3785|consen 121 PLCIRLLFHLAH---KLNDEKRIL-TFHSSLQ-----------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN---- 181 (557)
T ss_pred hHHHHHHHHHHH---HhCcHHHHH-HHHHHHh-----------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 433444444443 333322222 2222221 112223445556555556666666666555422
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 352 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lk 352 (1155)
+.....-.++|.+|.++.-|+-+.+.++
T Consensus 182 ----~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 182 ----PEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred ----hhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 3333334446666666666665555443
No 162
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0019 Score=70.28 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=100.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001110 209 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 288 (1155)
Q Consensus 209 G~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a 288 (1155)
|..|....++..|-..|.+|-++..+. ....+.+.+|...+.+|.+. +..+|..+++++++|+.... . -...+.-
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~--~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~G-r-f~~aAk~ 115 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKA--GSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMG-R-FTMAAKH 115 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhh-H-HHHHHhh
Confidence 444555566777777777777766554 23345677888888877655 99999999999999987642 1 1223555
Q ss_pred HHHHHHHHHHC-CChHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 289 YINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDH-IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 289 ~~nLA~iy~~l-G~~deAle~lekALei~ek~lG~dh-p~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
+..||.+|..- .++++|+.+|++|-+.+.. ... .....++...|.+-..+++|.+|+..|++...
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889998865 8999999999999998742 222 22335677788888888999998888876543
No 163
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0013 Score=71.54 Aligned_cols=184 Identities=13% Similarity=0.015 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
++.+..-|..|....++..|=..|.+|-++..+.- ...+.+.+|...+.+|... +..+|..++++|++|+... | .
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~-G-r 108 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM-G-R 108 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhh-h-H
Confidence 34444556677777888889899999988876652 3345677888888877655 9999999999999999764 2 2
Q ss_pred ChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~l-G~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
....+..+..||.+|..- .++++|+.+|++|-+.+..- ......-.++...|..-..+++|.+|+..|++......
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~- 185 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL- 185 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 223456677899998765 99999999999999886531 11222345677778888889999999999998765431
Q ss_pred hcCCCcH-H-HHHHHHHHHHHHHHcCChhHHHHHHHH
Q 001110 319 LLGPDHI-Q-TAASYHAIAIALSLMEAYPLSVQHEQT 353 (1155)
Q Consensus 319 ~lG~dhp-~-~a~a~~nLA~iy~~lGdyeeAle~lkk 353 (1155)
+..-. . .-..++.-|.+++...|.-.+...+++
T Consensus 186 --~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALek 220 (288)
T KOG1586|consen 186 --DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEK 220 (288)
T ss_pred --cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHH
Confidence 11111 1 112244556666665665555544433
No 164
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.86 E-value=0.00081 Score=82.22 Aligned_cols=146 Identities=20% Similarity=0.072 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
......++.+|+.|...|++++|++++.+|++. .|.....|...|.+|-+.|++.+|...++.|..+-
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD---- 258 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD---- 258 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC----
Confidence 334567889999999999999999999999987 67888999999999999999999999999997762
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP---NTAATYINVAMMEEGLGNVHVALRYLHKAL 313 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp---~~a~a~~nLA~iy~~lG~~deAle~lekAL 313 (1155)
...-.+-...+..+.+.|++++|.+.+..-..-- ..+..+. .........|.+|.++|++..|+..|...+
T Consensus 259 ----~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~--~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 259 ----LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED--VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred ----hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC--CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2222344557888899999999987765432210 0000111 123344567999999999999999999999
Q ss_pred HHHHHhc
Q 001110 314 KCNQRLL 320 (1155)
Q Consensus 314 ei~ek~l 320 (1155)
+++....
T Consensus 333 k~f~~~~ 339 (517)
T PF12569_consen 333 KHFDDFE 339 (517)
T ss_pred HHHHHHh
Confidence 9997764
No 165
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.84 E-value=0.009 Score=72.69 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKR------ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yek------ALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
..|..-|.+|.+..++++|++||++ |+++.+..+. ......--..|.-+...|+++.|+.+|-+|-.+.+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 4566678888888999999999875 6666554431 223334445577888889999888887654332211
Q ss_pred ---hcCCCc-------------HHHH-HHHHHHHHHHHHcCChhHHHHHHHHH-------------------HHHHHHHc
Q 001110 319 ---LLGPDH-------------IQTA-ASYHAIAIALSLMEAYPLSVQHEQTT-------------------LQILRAKL 362 (1155)
Q Consensus 319 ---~lG~dh-------------p~~a-~a~~nLA~iy~~lGdyeeAle~lkkA-------------------LeI~kk~l 362 (1155)
..|... ..++ ..|-.+|.-|...|+|+-|.++|.++ ..+..+..
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 111111 1111 22445777888888888888777543 22333333
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCc---------------hhhhhcCCC-cHHHHHHHHHHHHHHcCCh
Q 001110 363 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD---------------ASIASKGHL-SVSDLLDYINPSHDTKGRN 426 (1155)
Q Consensus 363 G~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~---------------~~~a~~~~~-svaelL~~Lg~~y~~qGdy 426 (1155)
|++..........-..-..+.+..++.++--...++ .....+.|. .+.++...++.-|...|+.
T Consensus 819 ~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 819 GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccCh
Confidence 333222222211111112222222222111111111 111223333 3567778888889999998
Q ss_pred HHHHHHHHHHHHH
Q 001110 427 VSTLKRKTYVAKV 439 (1155)
Q Consensus 427 eeAle~yeKALeL 439 (1155)
..|...|-+|-..
T Consensus 899 kaae~~flea~d~ 911 (1636)
T KOG3616|consen 899 KAAEEHFLEAGDF 911 (1636)
T ss_pred hHHHHHHHhhhhH
Confidence 8888777665443
No 166
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.82 E-value=0.00014 Score=80.87 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..+|+.|.-++..|+|.+|...|..-++.+ +.......++++||.+++.+|+|+.|...|..++.-+ +
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P 209 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----P 209 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----C
Confidence 34558999999999999999999999988764 6678889999999999999999999999999998854 5
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
+++....+++.||.+..++|+.++|...|++++.-
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 67888899999999999999999999999998875
No 167
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.80 E-value=0.013 Score=73.86 Aligned_cols=307 Identities=12% Similarity=-0.032 Sum_probs=169.8
Q ss_pred cchHHHHHHHHHHHhHHHhhcccCCCCCCCchHHhHHhhchhhhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001110 108 VRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKAL 187 (1155)
Q Consensus 108 l~kl~LLreL~~k~GiqL~ardY~fd~a~~f~~eDI~~L~pi~K~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eAL 187 (1155)
++.+..++++..+.|.++.... .......+.+.+|..-. ....+..+..+.....+.+|++|..++.++.
T Consensus 373 A~d~~~aa~lle~~~~~L~~~~------~lsll~~~~~~lP~~~l----~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~ 442 (894)
T COG2909 373 AGDPEMAADLLEQLEWQLFNGS------ELSLLLAWLKALPAELL----ASTPRLVLLQAWLLASQHRLAEAETLIARLE 442 (894)
T ss_pred CCCHHHHHHHHHhhhhhhhccc------chHHHHHHHHhCCHHHH----hhCchHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 5566667777777766663322 11112222222221111 1123344555677788999999999998887
Q ss_pred HHHHHh-cCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001110 188 AKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKY 266 (1155)
Q Consensus 188 el~e~i-~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~ 266 (1155)
.....- .+......+......|.+....|++++|+++.+.++...-. ......+.++..+|.+..-.|++++|+.+
T Consensus 443 ~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~~r~~~~sv~~~a~~~~G~~~~Al~~ 519 (894)
T COG2909 443 HFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYRSRIVALSVLGEAAHIRGELTQALAL 519 (894)
T ss_pred HHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccchhhhhhhhhhhHHHHHhchHHHHHHH
Confidence 664331 01122234555666788889999999999999999987432 12234567889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHHHcCC
Q 001110 267 VKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI---QTAASYHAIAIALSLMEA 343 (1155)
Q Consensus 267 yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp---~~a~a~~nLA~iy~~lGd 343 (1155)
.+++.++.+..- .......+.+..+.++..+|+. |..--.++....+.......+ ....++..+...+.+
T Consensus 520 ~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~--~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r--- 592 (894)
T COG2909 520 MQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQV--ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR--- 592 (894)
T ss_pred HHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---
Confidence 999999987631 2233455666779999999943 333333333333222222222 233334333444433
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHH-HH
Q 001110 344 YPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH-DT 422 (1155)
Q Consensus 344 yeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y-~~ 422 (1155)
++.+..-..+++.+........+... .....|+.+....++.+++......-.........+..+.-..+.+.-+| ..
T Consensus 593 ~~~~~~ear~~~~~~~~~~~~~~~~~-~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~ 671 (894)
T COG2909 593 LDLAEAEARLGIEVGSVYTPQPLLSR-LALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLA 671 (894)
T ss_pred HhhhhHHhhhcchhhhhcccchhHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcc
Confidence 77777777777766433322222211 12124443333333333332211110010111112333322233333333 77
Q ss_pred cCChHHHHHHHHH
Q 001110 423 KGRNVSTLKRKTY 435 (1155)
Q Consensus 423 qGdyeeAle~yeK 435 (1155)
+|++++|..+..+
T Consensus 672 qg~~~~a~~~l~~ 684 (894)
T COG2909 672 QGDKELAAEWLLK 684 (894)
T ss_pred cCCHHHHHHHHHh
Confidence 9999999888876
No 168
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0056 Score=72.24 Aligned_cols=250 Identities=13% Similarity=-0.027 Sum_probs=156.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCC--Ch----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--CCChh
Q 001110 171 LDKGKLEDAVTYGTKALAKLVAVCGPY--HR----MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG--LDHPD 242 (1155)
Q Consensus 171 l~~GdyeeAle~~~eALel~e~i~G~d--~p----~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG--~D~p~ 242 (1155)
...|-|++|.++-.+++...++.-..+ .+ .....+-.+..+-.-.|++.+|++-...+.+.+.+.-+ .-...
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 467889999999999998876653222 01 11234556677778899999999999999999887543 12234
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCC
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 322 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~ 322 (1155)
.+.+.+.+|.....-+.|+.|...|..|....... ...+.+-.|+|..|...|+-+.- .++++.. ++
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~----y~~ld~i----~p 432 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDL----YKALDLI----GP 432 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHH----HHHHHhc----CC
Confidence 56778889999999999999999999999875432 22466677999999998875543 3344433 23
Q ss_pred C-------cHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCC
Q 001110 323 D-------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 395 (1155)
Q Consensus 323 d-------hp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~ 395 (1155)
. +...+.+++..|...+.++++.+|..++.+.+++.... .....+...+-.|..+..-.+...++..-...
T Consensus 433 ~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 433 LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 2 12345667888888899999999999999999886221 11222333333444443333332222211111
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 001110 396 KPDASIASKGHLSVSDLLDYINPSHDTKGR--NVSTLKRKTY 435 (1155)
Q Consensus 396 ~~~~~~a~~~~~svaelL~~Lg~~y~~qGd--yeeAle~yeK 435 (1155)
..+......++.-..-....+..+|.+.|+ -+.+.+.|.+
T Consensus 511 amqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 511 AMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 111111112222222233445666777787 5566666655
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.79 E-value=6.4e-05 Score=65.44 Aligned_cols=60 Identities=23% Similarity=0.475 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001110 164 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 231 (1155)
Q Consensus 164 l~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei 231 (1155)
+.+|..++..|+|++|+..|+++++. +|....+++.+|.++..+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999865 6889999999999999999999999999999986
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=97.77 E-value=0.00017 Score=74.97 Aligned_cols=102 Identities=12% Similarity=-0.023 Sum_probs=85.4
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001110 155 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 234 (1155)
Q Consensus 155 ~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er 234 (1155)
.....-+.++..|..++.+|++++|..+|+-..-+ ++.....+..||.++..+++|++|+..|-.|..+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-- 101 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-- 101 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 34455778899999999999999999999865543 45556788999999999999999999999998863
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001110 235 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 272 (1155)
Q Consensus 235 ~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALe 272 (1155)
.++ ....+..|.||+.+|+.+.|+.+|+.++.
T Consensus 102 ---~~d---p~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 ---KND---YRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ---cCC---CCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 223 34578899999999999999999999887
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.76 E-value=9.5e-05 Score=64.38 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 248 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 248 ~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+.+|..++..|+|++|+.+|++++.. +|....+++.+|.++..+|++++|+.+|++++++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999873 68889999999999999999999999999999874
No 172
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.76 E-value=0.002 Score=77.91 Aligned_cols=177 Identities=18% Similarity=0.176 Sum_probs=134.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 001110 168 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 247 (1155)
Q Consensus 168 ~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay 247 (1155)
++-+..|+..+-+..|.+|+....-.. ..-.....+..+|..|...|+.+.|...|++|+..--+ .-.+++..+
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~k--a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~----~v~dLa~vw 428 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKK--AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK----TVEDLAEVW 428 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCccc--CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc----chHHHHHHH
Confidence 455668899999999999987632111 12234567889999999999999999999999886321 123568899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCChhH------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 248 GDLAVFYYRLQHTELALKYVKRALYLLHL----TCGPSHPNT------AATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 248 ~nLA~iy~~lG~yeeAle~yekALei~e~----l~G~dhp~~------a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
++.|....+..+++.|++++++|..+=.. .+...+|.. ..+|...+.+....|-++.-...|++.+++.
T Consensus 429 ~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr- 507 (835)
T KOG2047|consen 429 CAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR- 507 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-
Confidence 99999999999999999999998865211 122233332 3456677888888899999999999998876
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
..+.++..|.|..+....-|++|.+.|++.+.+|
T Consensus 508 -------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 508 -------IATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred -------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 3355667788999988888999999999888775
No 173
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.76 E-value=0.001 Score=66.47 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 204 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 283 (1155)
Q Consensus 204 al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp 283 (1155)
.+-.-|.++...|+++.|++.|.+||.+. |..+.+|+|.|..|.-+|+.++|++-+.+|+++. |+...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr 112 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR 112 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch
Confidence 34455777788999999999999999984 6678999999999999999999999999999974 44555
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 284 NTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 284 ~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
....++..-|.+|..+|+-+.|..-|+.|-++
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 66788999999999999999999999998875
No 174
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.75 E-value=0.076 Score=61.97 Aligned_cols=238 Identities=16% Similarity=0.055 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
-.++.-++..-+.|+++.|-.|+.++-+.. . ......+..++.+...+||++.|..-..+++++ .
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~-~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~ 183 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELA------G-DDTLAVELTRARLLLNRRDYPAARENVDQLLEM--------T 183 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccC------C-CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------C
Confidence 345555667777888888888888776652 1 223446667778888888888888888777776 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------HHHHhcC------------------CCCh
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALY-------------------LLHLTCG------------------PSHP 283 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALe-------------------i~e~l~G------------------~dhp 283 (1155)
|.....+.....+|.+.|+|...+.++.+.-+ ++.+... .++|
T Consensus 184 pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p 263 (400)
T COG3071 184 PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDP 263 (400)
T ss_pred cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcCh
Confidence 33445566667777888877776655543211 0011000 1122
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcC
Q 001110 284 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 363 (1155)
Q Consensus 284 ~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG 363 (1155)
.+...++.-+...|+.++|.+..+++|+.. . ++. .+..++. ..-++...=++..++.+.. -
T Consensus 264 ---~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-----~-D~~---L~~~~~~--l~~~d~~~l~k~~e~~l~~-----h 324 (400)
T COG3071 264 ---ELVVAYAERLIRLGDHDEAQEIIEDALKRQ-----W-DPR---LCRLIPR--LRPGDPEPLIKAAEKWLKQ-----H 324 (400)
T ss_pred ---hHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----c-Chh---HHHHHhh--cCCCCchHHHHHHHHHHHh-----C
Confidence 233455778889999999999999998754 1 111 1111221 1345655555555544432 3
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 364 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 364 ~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
++++....++..|.+..+...+....++. ..... .-+..+..+|.++.++|+..+|-..+++++.+...
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~lea-Al~~~---------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEA-ALKLR---------PSASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHH-HHhcC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 55665555555555444444443333331 11111 22345788999999999999999999999966544
No 175
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.75 E-value=0.0029 Score=63.13 Aligned_cols=175 Identities=26% Similarity=0.283 Sum_probs=131.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHH
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV-VLYHTGDFNQATIYQQKALDINER 234 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~-vy~~~GdydeAle~~eKALei~er 234 (1155)
.......++..+..+...+++..|+..+.+++.... .. .......+. ++...|+++.|..++.+++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-- 160 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDP------DP--DLAEALLALGALYELGDYEEALELYEKALELD-- 160 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 334466677788888888889999999888876521 11 223334444 8999999999999999996531
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001110 235 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 314 (1155)
Q Consensus 235 ~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALe 314 (1155)
.........+..++..+...++++.|+..+.+++...... ....+..++..+...+++++|+.++.+++.
T Consensus 161 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 161 ---PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred ---CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 1012455667777777889999999999999999864321 466788999999999999999999999998
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 315 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 315 i~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
.... ....+..++..+...+.+++|...+.+++...
T Consensus 231 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 231 LDPD--------NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hCcc--------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7622 34556667777777788999999988888653
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.74 E-value=0.00052 Score=81.17 Aligned_cols=115 Identities=23% Similarity=0.196 Sum_probs=97.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 001110 169 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 248 (1155)
Q Consensus 169 ~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~ 248 (1155)
.+...++++.|+.+|++..+. +|. +...|+.++...++-.+|+.++.+++.. .|.....+.
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL~ 238 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELLN 238 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 444567899999988886543 344 4566899999999999999999999954 355578888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHH
Q 001110 249 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 310 (1155)
Q Consensus 249 nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~le 310 (1155)
..|.++...++++.|+++.++|..+ .|....+|+.||.+|..+|+++.|+..++
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 9999999999999999999999986 57778999999999999999999997765
No 177
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.73 E-value=0.005 Score=69.71 Aligned_cols=142 Identities=20% Similarity=0.144 Sum_probs=97.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH-h-cCCCCh----h
Q 001110 170 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINER-E-LGLDHP----D 242 (1155)
Q Consensus 170 yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G-dydeAle~~eKALei~er-~-lG~D~p----~ 242 (1155)
...+|+++.|..++.++-.+............+..+++.|.-....+ +++.|..++++|+++.+. . ....++ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999887642222233467888999999999999 999999999999999765 1 112222 3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
...++..|+.+|...+.++...+ ..+++...+.-++ +++.... ..+- ++...++.+.+.+.+.+++.-.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~--L~l~-il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFL--LKLE-ILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHH--HHHH-HHhccCChhHHHHHHHHHHHhc
Confidence 46778899999999998864444 4445555544433 3444322 2222 2222788888888888777653
No 178
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.71 E-value=0.0014 Score=70.43 Aligned_cols=203 Identities=13% Similarity=0.034 Sum_probs=133.6
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
+...+..++..|.+|-..|-..-|.--|.+++.+ .|..+.+++.||..+...|+|+.|.+.|.-.+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4456778888899999999999999999999988 5788899999999999999999999999998885
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--HcCChhHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS--LMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~--~lGdyeeAle~lkkAL 355 (1155)
+|..-.+..|-|..++.-|+|..|.+-+.+-... .+.+|.... ++|. ..-+-.+|...+.+-.
T Consensus 129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~L------WLYl~E~k~dP~~A~tnL~qR~ 193 (297)
T COG4785 129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSL------WLYLNEQKLDPKQAKTNLKQRA 193 (297)
T ss_pred ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHH------HHHHHHhhCCHHHHHHHHHHHH
Confidence 5666677888999999999999998776543321 133443221 2222 2234455655433222
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhH-HHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001110 356 QILRAKLGPDDLRTQDAAAWLEYFESKAF-EQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKT 434 (1155)
Q Consensus 356 eI~kk~lG~dh~~t~~al~~La~l~qk~~-e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~ye 434 (1155)
+ ..+.+...+.....+|+.+..+.. +...+. .. +..... ..+.+++++||+.|..+|+.++|...|+
T Consensus 194 ~----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~---a~--~n~~~A---e~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 194 E----KSDKEQWGWNIVEFYLGKISEETLMERLKAD---AT--DNTSLA---EHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred H----hccHhhhhHHHHHHHHhhccHHHHHHHHHhh---cc--chHHHH---HHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 1 112222223233334443332221 111111 11 111111 1467899999999999999999999999
Q ss_pred HHHHH
Q 001110 435 YVAKV 439 (1155)
Q Consensus 435 KALeL 439 (1155)
-|+..
T Consensus 262 Laian 266 (297)
T COG4785 262 LAVAN 266 (297)
T ss_pred HHHHH
Confidence 76653
No 179
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.0022 Score=75.56 Aligned_cols=199 Identities=17% Similarity=0.091 Sum_probs=147.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 001110 166 SSKTALDKGKLEDAVTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 243 (1155)
Q Consensus 166 lG~~yl~~GdyeeAle~~~eALel~e~i~G~--d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~ 243 (1155)
+..+-+-.|++.+|++-...+.+.+.+.-++ .....+..++.+|......+.|+.|..+|..|+...+.. .-.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~ 403 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQ 403 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHH
Confidence 3445567899999999999999988776432 122356778889999999999999999999999986542 224
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d-------hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+.+-.|+|..|.+.++-+. +.++++. .++. +...+.+++-.|...+.++++.+|..++.+.|++.
T Consensus 404 a~~nlnlAi~YL~~~~~ed----~y~~ld~----i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAED----LYKALDL----IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHhHHHHHHHhccHHH----HHHHHHh----cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 5667789999999877543 2344443 2333 22346677888999999999999999999999987
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 001110 317 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 381 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~q 381 (1155)
..- .....++..+..|+.+..-.|+..++....+-++++.++. +|++..+.....+..+.+
T Consensus 476 nae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~ 536 (629)
T KOG2300|consen 476 NAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQ 536 (629)
T ss_pred chh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHH
Confidence 321 2233456677889999999999999999999999998886 677766555554444433
No 180
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.68 E-value=0.00025 Score=80.87 Aligned_cols=170 Identities=14% Similarity=0.060 Sum_probs=115.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~ 242 (1155)
.+..|.+++..|++++|++++.+. ....+...+-.+|..+++++.|...++++-++ .. +
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~e---D 163 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DE---D 163 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SC---C
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC---c
Confidence 455567788889999998887653 22356666778999999999999888776443 12 2
Q ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 243 TMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG--~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
...+....|++.+..| ++.+|..+|++..+ ..+....+++.+|.++..+|+|++|...+++|+...
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~---- 231 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD---- 231 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----
Confidence 2333444555666666 58888888887432 123346778999999999999999999999987532
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPL-SVQHEQTTLQILRAKLGPDDLRTQDAAA 374 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyee-Ale~lkkALeI~kk~lG~dh~~t~~al~ 374 (1155)
+....++.|++.+...+|+-.+ +.+++.+... ..++|+.......
T Consensus 232 ----~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~-----~~p~h~~~~~~~~ 277 (290)
T PF04733_consen 232 ----PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ-----SNPNHPLVKDLAE 277 (290)
T ss_dssp ----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH-----HTTTSHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----hCCCChHHHHHHH
Confidence 3456788899999999999844 4445444322 2578886655443
No 181
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.68 E-value=0.0012 Score=85.04 Aligned_cols=215 Identities=15% Similarity=0.013 Sum_probs=155.2
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
+|..+..|..+-..+...++.++|...+++||....-.-+....+...+|.||=..|. .-+.-.+.|++|.+++.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqycd-- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQYCD-- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHhcc--
Confidence 6777778877777888999999999999999986411111233456677777766654 44566778888887642
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+ ...|..|..+|..-+++++|.++|+..++-+. +...+|..+|..++.+.+-++|...+++||..
T Consensus 1529 -----~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1529 -----A--YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred -----h--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 2 45788899999999999999999999888762 35577888999999999999999999999987
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001110 358 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 437 (1155)
Q Consensus 358 ~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKAL 437 (1155)
+.+ .+|.....-...|. |..+..+..+++..+... .++...++|.-+...-.+.|+.+.++..|++++
T Consensus 1594 lPk---~eHv~~IskfAqLE-Fk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1594 LPK---QEHVEFISKFAQLE-FKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred cch---hhhHHHHHHHHHHH-hhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 644 34655443333332 233344444455443332 234567788888888888999999999999988
Q ss_pred HHhhhhc
Q 001110 438 KVKGNFY 444 (1155)
Q Consensus 438 eL~~kl~ 444 (1155)
.+.-...
T Consensus 1662 ~l~l~~k 1668 (1710)
T KOG1070|consen 1662 ELKLSIK 1668 (1710)
T ss_pred hcCCChh
Confidence 7755443
No 182
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.64 E-value=0.00018 Score=84.94 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=64.1
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
..|+...+++|+|.+|+.+|+|++|+.+|++||++ .+++.....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35778999999999999999999999999999997 3444444467999999999999999999999999997
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.00059 Score=75.97 Aligned_cols=102 Identities=12% Similarity=0.070 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHH
Q 001110 247 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 326 (1155)
Q Consensus 247 y~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~ 326 (1155)
+++.|.-++..|+|..|...|+.-+.- .++......+++.||.+++.+|+|++|...|..+.+-+ ++++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 788999999999999999999988774 47788899999999999999999999999999998865 77888
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
...+++.||.+...+|+.++|...|++.++-+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999999887654
No 184
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.60 E-value=0.0009 Score=71.93 Aligned_cols=172 Identities=14% Similarity=0.095 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..+++.|..|-..|-..-|..-|.+++.+ .|..+.+++.||..+...|+|+.|.+.|.-.+++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------ 128 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------ 128 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc------
Confidence 34778999999999999999999999999988 6889999999999999999999999999998886
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH-------------HHHHHHHHHHHHC-----
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA-------------ATYINVAMMEEGL----- 299 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a-------------~a~~nLA~iy~~l----- 299 (1155)
+|..-.+..|.|..++.-|+|..|.+-+.+-.+. .+++|... .+..+|..-+...
T Consensus 129 --Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~W 201 (297)
T COG4785 129 --DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQW 201 (297)
T ss_pred --CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhh
Confidence 4666677888999999999999998766553321 22233221 1112222222211
Q ss_pred ---------CChHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 300 ---------GNVHVALRYLHKALKCNQRLLGPDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 300 ---------G~~deAle~lekALei~ek~lG~dhp----~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
|+..+ ..+++++.... .+.. ....+|+.||..|...|+.++|..+|+-|+.
T Consensus 202 G~~iV~~yLgkiS~-e~l~~~~~a~a-----~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 202 GWNIVEFYLGKISE-ETLMERLKADA-----TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hHHHHHHHHhhccH-HHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11110 11222222211 1222 2346789999999999999999999987664
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0016 Score=73.38 Aligned_cols=120 Identities=21% Similarity=0.138 Sum_probs=95.4
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---TELALKYVKRALYLL 274 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~---yeeAle~yekALei~ 274 (1155)
+|..+.-|..||.+|+.+|++..|...|++|+++. ++....+..+|.+++.+.+ ..+|...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 78889999999999999999999999999999983 4445667777877776543 46788999999875
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 001110 275 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 337 (1155)
Q Consensus 275 e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~i 337 (1155)
++....+++.||..++..|+|.+|...++..|+.. ..+.+....+-..++..
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIARA 274 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHH
Confidence 56668889999999999999999999999988865 34555444444334433
No 186
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.59 E-value=0.00086 Score=79.36 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=97.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001110 208 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 287 (1155)
Q Consensus 208 LG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~ 287 (1155)
|-.++...++++.|+.++++.... +|+ ....|+.++...++-.+|++++.+++.. .|..+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 344555678888888888876542 343 3455899999999999999999999953 444588
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 001110 288 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 352 (1155)
Q Consensus 288 a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lk 352 (1155)
.+...|..+...++++.|+.+.++|..+. |....+|+.||.+|..+|+|+.|+..+.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 88899999999999999999999999986 6677899999999999999999997665
No 187
>PRK11906 transcriptional regulator; Provisional
Probab=97.59 E-value=0.00089 Score=79.41 Aligned_cols=147 Identities=12% Similarity=-0.005 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q 001110 204 AYSLLAVVLYHTG---DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---------QHTELALKYVKRAL 271 (1155)
Q Consensus 204 al~nLG~vy~~~G---dydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~l---------G~yeeAle~yekAL 271 (1155)
.++..|...+..+ ..+.|+.+|.+|+... .-+|+.+.+|..+|.|++.. ....+|.++.++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 3466666665554 3567777888888332 22688899999999998865 12346667777777
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 001110 272 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 351 (1155)
Q Consensus 272 ei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~l 351 (1155)
++ ++..+.++..+|.++...++++.|+.+|++|+.+. |+.+.+++..|.++...|+.++|.+++
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 65 34557788899999999999999999999999875 678899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH
Q 001110 352 QTTLQILRAKLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 352 kkALeI~kk~lG~dh~~t~~al~~L 376 (1155)
++|+++ .|..........|+
T Consensus 396 ~~alrL-----sP~~~~~~~~~~~~ 415 (458)
T PRK11906 396 DKSLQL-----EPRRRKAVVIKECV 415 (458)
T ss_pred HHHhcc-----CchhhHHHHHHHHH
Confidence 999975 34444444444555
No 188
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.0017 Score=73.73 Aligned_cols=148 Identities=17% Similarity=0.136 Sum_probs=99.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 001110 170 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 249 (1155)
Q Consensus 170 yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~n 249 (1155)
++...+|..|+.+++-.+.+- ..+.-..-.++|.||+++|+|++|+..|.-+..- .+ ..+....+
T Consensus 32 fls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~--~~~el~vn 96 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DD--APAELGVN 96 (557)
T ss_pred HHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CC--CCcccchh
Confidence 456788999999888776542 2222345677999999999999999988776541 12 23556788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 001110 250 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 329 (1155)
Q Consensus 250 LA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~ 329 (1155)
||.+++.+|.|.+|.....+| ++.|...+.+++++.- +++-+ -+-.|+..|.- +..
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka---------~k~pL~~RLlfhlahk---lndEk-~~~~fh~~LqD-----------~~E 152 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKA---------PKTPLCIRLLFHLAHK---LNDEK-RILTFHSSLQD-----------TLE 152 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhC---------CCChHHHHHHHHHHHH---hCcHH-HHHHHHHHHhh-----------hHH
Confidence 999999999999998776664 3466667777777654 34422 23333333321 223
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 330 SYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 330 a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
-...||.+++..-.|.+|++.|++.+.
T Consensus 153 dqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 153 DQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345577777776777777777776663
No 189
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.55 E-value=0.0047 Score=79.96 Aligned_cols=171 Identities=14% Similarity=0.004 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
-.++..-..+++.++.++|.+.+++||....-.-+...-..+.+|.||=..| |.-+.-.+.|++|.+++.
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd------- 1528 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD------- 1528 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc-------
Confidence 3344444466788999999999999997641111112234455566665555 566777788999988752
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
....|..|.-+|..-+++++|.++|++.++-+. .....|...|..+..+.+-+.|...+.+||....+
T Consensus 1529 --~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-- 1596 (1710)
T KOG1070|consen 1529 --AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-- 1596 (1710)
T ss_pred --hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch--
Confidence 346788899999999999999999999887643 24667888999999999999999999999998743
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
..........|++-++.|+-+.+..+|+..+..
T Consensus 1597 ----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1597 ----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred ----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 223455667799999999999999888876643
No 190
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.52 E-value=0.00033 Score=82.83 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=63.5
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 197 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 197 d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
..|..+.+++++|.+|+.+|+|++|+..|++||++. +++.....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999982 333333367999999999999999999999999996
No 191
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.011 Score=66.00 Aligned_cols=264 Identities=13% Similarity=-0.003 Sum_probs=162.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----------
Q 001110 164 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE---------- 233 (1155)
Q Consensus 164 l~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e---------- 233 (1155)
+++|+-.....++++|+..|.+.|......-...-.+.-.+...|+.+|...|++..--+......+..+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5667777888999999999998886511100001123345678899999999887543333222221111
Q ss_pred ------HhcC-CCCh-hh--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001110 234 ------RELG-LDHP-DT--------------------MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 285 (1155)
Q Consensus 234 ------r~lG-~D~p-~~--------------------a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~ 285 (1155)
+.-+ .|+. +. ...-..+..+++..|+|.+|+....-.+.-+++. .+.+..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--DDK~~L 164 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--DDKINL 164 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--cCccce
Confidence 1101 1111 00 1122456778888899999998888877776664 355666
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCC
Q 001110 286 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 365 (1155)
Q Consensus 286 a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~d 365 (1155)
...+..-..+|....+..++..-+..|.......+-+. ...+..-..-|.+++...+|.-|..||-+|++-|.. +..
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp-qlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~--l~~ 241 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP-QLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL--LKM 241 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH-HHHHHHHHhccceeeccccchhHHHHHHHHHhcccc--ccc
Confidence 66776677888888888888887777766655443321 123344444577778889999999999999988743 466
Q ss_pred CHHHHHHHHHHH--HHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHH--HHcCChHHHHHHHHHHH
Q 001110 366 DLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYVA 437 (1155)
Q Consensus 366 h~~t~~al~~La--~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y--~~qGdyeeAle~yeKAL 437 (1155)
|......+.++. .+.....+.-.++......... ......+++..++.+| +.+.+|..|+..|..-+
T Consensus 242 d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~-----y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el 312 (421)
T COG5159 242 DVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKH-----YDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDEL 312 (421)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhh-----hhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHh
Confidence 777666666543 3444444444444433322110 0112445666777777 56778888888887644
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.0015 Score=69.61 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..+-.-|.-++..|+|++|..-|.+||+++.... ......+|.+.|.++..++.++.|+.-+.+||++
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------- 163 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------- 163 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-------
Confidence 356677789999999999999999999999975442 2455678899999999999999999999999998
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
.|....++...|.+|..+.+|++|++-|.+.+++
T Consensus 164 -~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 -NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred -CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4666778888899999999999999999999885
No 193
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.071 Score=63.16 Aligned_cols=247 Identities=14% Similarity=0.053 Sum_probs=143.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~ 242 (1155)
+...|+.-..++++..|...|++||.. + ......|...+.+-+.......|...+.+|+.+..+
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdv-------d-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-------- 139 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDV-------D-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-------- 139 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhc-------c-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch--------
Confidence 444455556667777777777777764 2 233456777788888888888888888888877433
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------HHHHhcCCCChhHHHHHHHHHHHH
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALY--------------------------LLHLTCGPSHPNTAATYINVAMME 296 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALe--------------------------i~e~l~G~dhp~~a~a~~nLA~iy 296 (1155)
.-..++..-.+-..+|+...|.+.|++-+. ++++. --.||. ...+...|..-
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerf-V~~HP~-v~~wikyarFE 217 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERF-VLVHPK-VSNWIKYARFE 217 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH-heeccc-HHHHHHHHHHH
Confidence 333444444444455555555555543222 11111 113555 45677888889
Q ss_pred HHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001110 297 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 297 ~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~L 376 (1155)
...|+..-|...|++|++.. | +.......+...|..-..+..++.|...|+-|++... .+ ++......+
T Consensus 218 ~k~g~~~~aR~VyerAie~~----~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p----k~--raeeL~k~~ 286 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFL----G-DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP----KG--RAEELYKKY 286 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHh----h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cc--cHHHHHHHH
Confidence 99999999999999999876 2 3334455666677777788888888888887776431 11 223333333
Q ss_pred HHHHHHhHHHH---HHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001110 377 EYFESKAFEQQ---EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 439 (1155)
Q Consensus 377 a~l~qk~~e~A---eAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL 439 (1155)
..+..+.++.. .++...... .....-...+.-.+.++..-.+....|+.+.-.+.|++|+.-
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~-qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKF-QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhh-HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 33433332221 111111110 011111112223344444445557779999999999998863
No 194
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.43 E-value=0.00023 Score=56.07 Aligned_cols=41 Identities=29% Similarity=0.395 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 284 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~ 284 (1155)
+.++++||.+|..+|++++|+.++++++.+.+.++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 57899999999999999999999999999999999999985
No 195
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.43 E-value=0.00058 Score=77.16 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...+-+.|..|+.+|+|++|+.+|.+++.+ .|.....+.+.|.+|+.+..|..|..-+..|+.+..
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------ 162 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------ 162 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------
Confidence 334678899999999999999999999987 566777889999999999999999999999999843
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
....+|...|..-..+|+..+|.+-|+.+|++
T Consensus 163 --~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 163 --LYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 45789999999999999999999999999986
No 196
>PRK15331 chaperone protein SicA; Provisional
Probab=97.42 E-value=0.00082 Score=70.02 Aligned_cols=102 Identities=11% Similarity=-0.036 Sum_probs=85.1
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
........+..|.-++..|++++|..+|+-...+ ++.....+..||.++..+++|++|+.+|-.|..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 4566778889999999999999999999876654 33445678999999999999999999999998763
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
.++| ...+..|.+|..+|+.+.|+.+|+.+++.
T Consensus 102 --~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 --KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred --cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 2333 23678999999999999999999998873
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.41 E-value=0.0021 Score=65.65 Aligned_cols=104 Identities=20% Similarity=0.325 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...++..|...+..|+|++|++.|+.....+ +..+....+...||.+|+..+++++|+..+++-|++. +.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence 5678999999999999999999998876552 4455667889999999999999999999999999974 77
Q ss_pred ChhhHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQH---------------TELALKYVKRALYL 273 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~---------------yeeAle~yekALei 273 (1155)
|+....+++..|.+++.+.. ..+|+..|++.+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 89999999999999999876 66677777666654
No 198
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.39 E-value=0.14 Score=64.47 Aligned_cols=156 Identities=18% Similarity=0.103 Sum_probs=112.8
Q ss_pred ChhhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 198 HRMTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~-~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
....+.++..||.+++ +..+++.|..++.|++.+.++ .+.. .....+...++.+|...+... |+.+++++++.++.
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~-d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLT-DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchH-HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 3456888999999888 889999999999999999866 1111 123455667899999988888 99999999998776
Q ss_pred hcCCCChhHHHHHHHH-HHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 277 TCGPSHPNTAATYINV-AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 277 l~G~dhp~~a~a~~nL-A~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
. .+.....++..+ ...+...+++..|++.++....+.... .+......+....+.++...+..+++++.++++.
T Consensus 132 ~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 132 Y---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred c---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 2 233333333333 333334489999999999999887543 2333344555566777778888899999999997
Q ss_pred HHHHHH
Q 001110 356 QILRAK 361 (1155)
Q Consensus 356 eI~kk~ 361 (1155)
......
T Consensus 207 ~~~~~~ 212 (608)
T PF10345_consen 207 AQARSL 212 (608)
T ss_pred HHHhhc
Confidence 776654
No 199
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.006 Score=68.24 Aligned_cols=175 Identities=14% Similarity=0.055 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHH----------HHHHH
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQ----------KALDI 231 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~e----------KALei 231 (1155)
.+-.+|.+|+...+|..|..+|.+.-.+ +|.........|..++..+.+..|+.... +++++
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqL 117 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQL 117 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3556788999999999999999887655 56666666666777777777777765432 22222
Q ss_pred HHHh-cC-C------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001110 232 NERE-LG-L------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 297 (1155)
Q Consensus 232 ~er~-lG-~------------D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~ 297 (1155)
...+ +. . -..+.+....+.|.+.++.|+|+.|++-|+.|++. +.-.|.. -+++|.+++
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpll---AYniALaHy 189 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPLL---AYNLALAHY 189 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh-----cCCCchh---HHHHHHHHH
Confidence 1111 00 0 11245677899999999999999999999999986 3334433 478999999
Q ss_pred HCCChHHHHHHHHHHHHHHHHhc----------CCCc-----------HHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 001110 298 GLGNVHVALRYLHKALKCNQRLL----------GPDH-----------IQTAASYHAIAIALSLMEAYPLSVQHEQ 352 (1155)
Q Consensus 298 ~lG~~deAle~lekALei~ek~l----------G~dh-----------p~~a~a~~nLA~iy~~lGdyeeAle~lk 352 (1155)
+.|+++.|+++..+.++.-.+.. |.+- .....++..-+.++++.|+++.|.+.+.
T Consensus 190 ~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 99999999999988877543321 1110 0123445556778889999998887553
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.36 E-value=0.021 Score=60.54 Aligned_cols=157 Identities=18% Similarity=0.076 Sum_probs=111.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 001110 171 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 250 (1155)
Q Consensus 171 l~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nL 250 (1155)
.+.=+.+.++.-..+.+++. .+..-.+.||....+.|++.+|..+|++++.- . ..+....+..+
T Consensus 67 ~q~ldP~R~~Rea~~~~~~A---------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG------~-fA~d~a~lLgl 130 (251)
T COG4700 67 QQKLDPERHLREATEELAIA---------PTVQNRYRLANALAELGRYHEAVPHYQQALSG------I-FAHDAAMLLGL 130 (251)
T ss_pred HHhcChhHHHHHHHHHHhhc---------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc------c-cCCCHHHHHHH
Confidence 33444555554444555442 22345678999999999999999999999873 1 23345667889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 001110 251 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 330 (1155)
Q Consensus 251 A~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a 330 (1155)
+...+..+++..|...+++..+.- +. -.......-+|..|..+|++.+|...|+.++..+ ++ ..+.+
T Consensus 131 A~Aqfa~~~~A~a~~tLe~l~e~~-----pa-~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg--~~ar~ 197 (251)
T COG4700 131 AQAQFAIQEFAAAQQTLEDLMEYN-----PA-FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-----PG--PQARI 197 (251)
T ss_pred HHHHHhhccHHHHHHHHHHHhhcC-----Cc-cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CC--HHHHH
Confidence 999999999999999998876642 10 1123345567999999999999999999999886 21 12333
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 331 YHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 331 ~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
+ .+..+..+|+.++|..-+....+..
T Consensus 198 ~--Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 198 Y--YAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred H--HHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3 6888889999999988766555443
No 201
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.0018 Score=68.97 Aligned_cols=100 Identities=19% Similarity=0.067 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHH
Q 001110 247 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 326 (1155)
Q Consensus 247 y~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~ 326 (1155)
+-.-|.-++..|+|++|..-|..||+++.... ......+|.|-|.++..++.++.|+.-+.+|+++. +.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pt 166 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PT 166 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------ch
Confidence 34457888999999999999999999864432 23456788999999999999999999999999986 44
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
...++..-|.+|.++.+|++|++-|++.+++
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 5567778899999999999999999988865
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0026 Score=71.70 Aligned_cols=119 Identities=17% Similarity=0.107 Sum_probs=96.5
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 001110 150 HKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG---DFNQATIYQQ 226 (1155)
Q Consensus 150 ~K~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G---dydeAle~~e 226 (1155)
..+......+++.++.+|.+|+..|+++.|...|.+|+++ .+.....+..+|.+++.+. ...++..+++
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3455667778899999999999999999999999999998 4556677888888887654 4578888999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001110 227 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 288 (1155)
Q Consensus 227 KALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a 288 (1155)
+++.. ++....+.+.||..++..|+|.+|...++..++. ...+.|....+
T Consensus 218 ~al~~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr~~i 267 (287)
T COG4235 218 QALAL--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRRSLI 267 (287)
T ss_pred HHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchHHHH
Confidence 99886 4667788999999999999999999999998875 33455544333
No 203
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.011 Score=69.93 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhc
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM--TAGAYSLLAVVLYHTGDFNQATIYQQKALD-INEREL 236 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~--~A~al~nLG~vy~~~GdydeAle~~eKALe-i~er~l 236 (1155)
+..++-.++.++..|+|.+|.+++... .+.+..-|...+. .+..+++||.+++.+|.|.-+..+|.+||. ...+..
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 456777788889999999998876543 2211111112333 344578999999999999999999999996 333321
Q ss_pred CC---------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 237 GL---------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 237 G~---------D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
.. -....+.+++|+|..|...|+.-.|.++|.++...+..
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 11 01234678899999999999999999999999998754
No 204
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.31 E-value=0.0033 Score=64.17 Aligned_cols=106 Identities=18% Similarity=0.143 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 280 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~ 280 (1155)
....++.-|...+..|+|.+|++.|+....-+ +-.+....+...||.+|+..++|++|+..+++-+++ .+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC
Confidence 35678888999999999999999988766542 334456688999999999999999999999999886 58
Q ss_pred CChhHHHHHHHHHHHHHHCCC---------------hHHHHHHHHHHHHHH
Q 001110 281 SHPNTAATYINVAMMEEGLGN---------------VHVALRYLHKALKCN 316 (1155)
Q Consensus 281 dhp~~a~a~~nLA~iy~~lG~---------------~deAle~lekALei~ 316 (1155)
.||....+++..|.++..+.. ..+|...|++.++.+
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 899999999999999998876 667777777766654
No 205
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.30 E-value=0.00039 Score=54.70 Aligned_cols=42 Identities=43% Similarity=0.566 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~ 242 (1155)
++.++++||.+|..+|++++|+.++++++.+.++.+|.+||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 367899999999999999999999999999999999999984
No 206
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.27 E-value=0.013 Score=71.18 Aligned_cols=180 Identities=13% Similarity=-0.026 Sum_probs=121.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhh---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 001110 172 DKGKLEDAVTYGTKALAKLVAVCGPYHRMT---AGAYSLLAVVLYH----TGDFNQATIYQQKALDINERELGLDHPDTM 244 (1155)
Q Consensus 172 ~~GdyeeAle~~~eALel~e~i~G~d~p~~---A~al~nLG~vy~~----~GdydeAle~~eKALei~er~lG~D~p~~a 244 (1155)
-.|+-+.+++++.++.+- ..+ ..+.. ...|+..-..+.. ..+.+.|.+.+...+.. .|+-.
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSA 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcH
Confidence 368889999998887652 111 11111 1112222221221 23445555555555543 46677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCc
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 324 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dh 324 (1155)
..+...|.++...|+.++|+++|++++...... ..-..-+++.+|.++..+.+|++|..+|.+.++.. .
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~ 336 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------K 336 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------c
Confidence 788899999999999999999999988643321 11234578899999999999999999999887743 2
Q ss_pred HHHHHHHHHHHHHHHHcCCh-------hHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 001110 325 IQTAASYHAIAIALSLMEAY-------PLSVQHEQTTLQILRAKLGPDDLRTQDAAA 374 (1155)
Q Consensus 325 p~~a~a~~nLA~iy~~lGdy-------eeAle~lkkALeI~kk~lG~dh~~t~~al~ 374 (1155)
...+...+..|.++...|+. ++|.++++++-....+..|..-|.-..+..
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~R 393 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIR 393 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHH
Confidence 34566677889999999999 788888888877777766655554433333
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.022 Score=63.15 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.....+.+..+++-.|.|.-++.++++.++. +.+........||.+.++.||.+.|..+|++.-+...+..+.
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~ 248 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL 248 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc
Confidence 3566777888888999999999999998874 234455677889999999999999999999776655443222
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
........+.+.+|...++|..|...|.+++.. ++..+.+-++.|.|+..+|+..+|++.++.++.+.
T Consensus 249 --q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~-- 316 (366)
T KOG2796|consen 249 --QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD-- 316 (366)
T ss_pred --chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--
Confidence 234567889999999999999999999888763 45567778899999999999999999999988765
Q ss_pred hcCCCcHHHHHHHHHHHHHHH
Q 001110 319 LLGPDHIQTAASYHAIAIALS 339 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~ 339 (1155)
+.+...-...++|..+|.
T Consensus 317 ---P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 317 ---PRHYLHESVLFNLTTMYE 334 (366)
T ss_pred ---CccchhhhHHHHHHHHHH
Confidence 333334445566666553
No 208
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0016 Score=70.92 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
+..+..+-+.|..|+...+|..|+..|.+|+.+ +|..+..|.+-|.+|+++.+++.+..-.++|+++
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql----- 73 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL----- 73 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-----
Confidence 345677888899999999999999999999987 7888889999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
.++.+..++.||.++.....|++|+..+++|+.+.+..
T Consensus 74 ---~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 ---DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred ---ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999999987663
No 209
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.26 Score=58.68 Aligned_cols=189 Identities=13% Similarity=0.047 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI------ 231 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei------ 231 (1155)
.....++..++.-...|+..-|...|.+|++.+.. +......+...|..-..+..++.|..+|+-||+-
T Consensus 205 P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra 279 (677)
T KOG1915|consen 205 PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA 279 (677)
T ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 44566777788888889999999999999987532 2334445555666666666777777666666542
Q ss_pred ---------HHHhcCC---------------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 232 ---------NERELGL---------------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 281 (1155)
Q Consensus 232 ---------~er~lG~---------------------D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d 281 (1155)
+++.+|. ++|....++...-.+....|+.+.-.+.|++|+.-.--.....
T Consensus 280 eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr 359 (677)
T KOG1915|consen 280 EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHH
Confidence 2222332 2344455666666677777899999999999987311000000
Q ss_pred -ChhHHHHHHHHHHH-HHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 282 -HPNTAATYINVAMM-EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 282 -hp~~a~a~~nLA~i-y~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
-...+..+.|.+.. -....+.+.+.+.|+.+|++. ...+...+.++...|.....+.+...|.+.+-.|+
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 00112334444432 335788999999999999975 34566677778777877777777777777665554
No 210
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.0012 Score=57.71 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=48.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001110 170 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 231 (1155)
Q Consensus 170 yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei 231 (1155)
++..|+|++|+.+|++++.. +|....++..||.+|...|++++|..++++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999987 6778889999999999999999999999998875
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.12 E-value=0.0023 Score=56.75 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=53.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 208 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 208 LG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
|..+|...++|++|+.++++++.+ +|.....+..+|.+|..+|++++|++.|+++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467899999999999999999997 4667888999999999999999999999999975
No 212
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.11 E-value=0.042 Score=61.10 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCC
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 323 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~d 323 (1155)
+..+++-|...+..|+|++|.++|+..... .+..|..-.+...++.++.+.+++++|+.+.++=+.+. +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 566788889999999999999999987642 23455667889999999999999999999999888776 78
Q ss_pred cHHHHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCc
Q 001110 324 HIQTAASYHAIAIALSLM-----EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 398 (1155)
Q Consensus 324 hp~~a~a~~nLA~iy~~l-----GdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~ 398 (1155)
|+....+++..|.++... .|...+...+...-++..+. |+...+.++...+..+..+..
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA-------------- 167 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALA-------------- 167 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHH--------------
Confidence 899999999999887643 23333333332222222222 555555566555554443221
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001110 399 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 439 (1155)
Q Consensus 399 ~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL 439 (1155)
..-..+|+.|.+.|.+..|+..++..++-
T Consensus 168 ------------~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 168 ------------GHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred ------------HHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 22234555556666666666666555543
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.10 E-value=0.0021 Score=57.02 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=53.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 250 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 250 LA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
|..+|...++|++|++++++++.+ +|.....+...|.+|..+|++++|+..|+++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467899999999999999999986 56678889999999999999999999999999875
No 214
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.10 E-value=0.025 Score=55.96 Aligned_cols=121 Identities=23% Similarity=0.218 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhcCC---CChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 200 MTAGAYSLLAVV--LYHTGDFNQATIYQQKALDINERELGL---DHPD-TMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 200 ~~A~al~nLG~v--y~~~GdydeAle~~eKALei~er~lG~---D~p~-~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
.++.+|..|+.. .+.-|-|++|..-+++|+++.+.+-.. ||.. .+.++..|+..+..+|+|++++....++|..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 345666666544 455688999999999999997654322 2222 4667888999999999999999999999999
Q ss_pred HHHhcCCCChh----HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 274 LHLTCGPSHPN----TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 274 ~e~l~G~dhp~----~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
+.+. |.-|.+ ++.+-++-|..+..+|+.++|+..|+.+-++..+..|
T Consensus 85 FNRR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 85 FNRR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred Hhhc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 8774 444443 4556678899999999999999999999998866544
No 215
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.09 E-value=0.0055 Score=66.99 Aligned_cols=101 Identities=20% Similarity=0.141 Sum_probs=83.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-----hhhHHH
Q 001110 172 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH-----PDTMKS 246 (1155)
Q Consensus 172 ~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~-----p~~a~a 246 (1155)
....+++|++.|.-|+-... +.+..+...|..+..+|.+|..+|+-+....++++|++.+++.+.... .+....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 35578899999998887644 334566688999999999999999999999999999999887764332 244678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 247 YGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 247 y~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
++.+|.++.+.|++++|+++|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 889999999999999999999998874
No 216
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.09 E-value=0.042 Score=69.36 Aligned_cols=191 Identities=14% Similarity=0.033 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+...--.|.+...+|++++|+++.+.++...-. ......+.++..+|.+..-.|++++|..+.+++.++.++. .
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~ 531 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--D 531 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--c
Confidence 3444444577888999999999999999976432 1233456788999999999999999999999999998774 1
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS---HPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d---hp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
.......+.+..+.++..+|+...|. ..++........... |.....++..+...+.+ ++.+..-..+.+++
T Consensus 532 ~~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~ 606 (894)
T COG2909 532 VYHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEV 606 (894)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchh
Confidence 12344566777899999999433332 222222222211122 22233344344444433 67777777777666
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 316 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 316 ~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
.... ..........++.||.++...|++++|...+.+....+..
T Consensus 607 ~~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 607 GSVY-TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred hhhc-ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 5333 2222223333468999999999999999999888777543
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.07 E-value=0.066 Score=63.00 Aligned_cols=216 Identities=13% Similarity=0.019 Sum_probs=123.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 001110 173 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 252 (1155)
Q Consensus 173 ~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~ 252 (1155)
...|..|...+.++|...++-++...........+|=..|+...+|+.-+.+.+..-.+ ...+-.....+....|.
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAF 187 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHH
Confidence 33445555666666666655544333445566777888899999999888777654433 11112334455667888
Q ss_pred HHHH---cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CChHHHHHHHHHHHHHHHHhc
Q 001110 253 FYYR---LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---------GNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 253 iy~~---lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l---------G~~deAle~lekALei~ek~l 320 (1155)
++.+ .|+.++|++.+..++.- ......+++.-+|.+|..+ ..+++|+.+|.++.++..
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~--- 257 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP--- 257 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc---
Confidence 8888 89999999999887553 2233355777788887653 224556666666555431
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchh
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 400 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~ 400 (1155)
..+.-.|++.++...|...+...-+++....+...+|.. +.....
T Consensus 258 ------~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k---------------------------g~~~~~-- 302 (374)
T PF13281_consen 258 ------DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK---------------------------GSLEKM-- 302 (374)
T ss_pred ------cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh---------------------------cccccc--
Confidence 223445677777766754433322222211111111100 000000
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 401 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 401 ~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
..-| .+-.+..+....|++++|..+++++.++.....
T Consensus 303 -----~dYW--d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 -----QDYW--DVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred -----ccHH--HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 0001 122344556778999999999999998865544
No 218
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.04 E-value=0.024 Score=67.81 Aligned_cols=127 Identities=19% Similarity=0.104 Sum_probs=101.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-------
Q 001110 169 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP------- 241 (1155)
Q Consensus 169 ~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p------- 241 (1155)
...+..+...-+++.++||++ +++++.+|..||.-. ..-..+|+++|++|++..+..++.+..
T Consensus 177 ~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHF 246 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence 445778899999999999998 578889998888632 334789999999999998887765311
Q ss_pred ----------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 001110 242 ----------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 311 (1155)
Q Consensus 242 ----------~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lek 311 (1155)
-...+...||.|..++|+.++|++.|+..++.. ...+...+..||..++..++.|.++..++.+
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 124456789999999999999999999887642 1223567899999999999999999888876
No 219
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.058 Score=60.16 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 204 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 283 (1155)
Q Consensus 204 al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp 283 (1155)
.+..-|.+|.+-|++++|+....+...+ .+...--.++.++.+++-|.+.+++..++-+.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------- 169 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------- 169 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------
Confidence 3445578899999999999887763222 22233346777888899999888888776322
Q ss_pred hHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 001110 284 NTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 359 (1155)
Q Consensus 284 ~~a~a~~nLA~iy~~----lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~k 359 (1155)
.++..||..|.. -+++.+|.-+|++-- + ..+.+...+..+|.++..+|+|++|...++.|+.-
T Consensus 170 ---~tLtQLA~awv~la~ggek~qdAfyifeE~s-------~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-- 236 (299)
T KOG3081|consen 170 ---ATLTQLAQAWVKLATGGEKIQDAFYIFEELS-------E-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-- 236 (299)
T ss_pred ---HHHHHHHHHHHHHhccchhhhhHHHHHHHHh-------c-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 234445544443 234556665555422 2 12346677888999999999999999999999864
Q ss_pred HHcCCCCHHHHHHHHHHHHHHH
Q 001110 360 AKLGPDDLRTQDAAAWLEYFES 381 (1155)
Q Consensus 360 k~lG~dh~~t~~al~~La~l~q 381 (1155)
...++.++..+..++....
T Consensus 237 ---d~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 237 ---DAKDPETLANLIVLALHLG 255 (299)
T ss_pred ---cCCCHHHHHHHHHHHHHhC
Confidence 3455665555444444433
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.96 E-value=0.025 Score=68.81 Aligned_cols=133 Identities=20% Similarity=0.031 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 001110 174 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 253 (1155)
Q Consensus 174 GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~i 253 (1155)
...+.|.+++...++. .|.-+-.+...|+++...|+.++|++.|++|+...... ..-...+++.+|++
T Consensus 247 ~~~~~a~~lL~~~~~~--------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWC 314 (468)
T ss_pred CCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHH
Confidence 4455566666655544 57777788999999999999999999999998643221 11224678999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCh-------HHHHHHHHHHHHHHHHhcCCCcH
Q 001110 254 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHKALKCNQRLLGPDHI 325 (1155)
Q Consensus 254 y~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~-------deAle~lekALei~ek~lG~dhp 325 (1155)
+..+.+|++|.++|.+.++. +.-..+...+..|.++...|+. ++|..+|.++-.+..+..|...|
T Consensus 315 ~~~~~~w~~A~~~f~~L~~~-------s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLKE-------SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHchHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 99999999999999988763 2233456667789999999999 78888888887777766564444
No 221
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.96 E-value=0.0021 Score=56.13 Aligned_cols=53 Identities=26% Similarity=0.320 Sum_probs=46.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 213 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 213 ~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
+..|++++|+.+|++++.. +|+...++..+|.+|...|++++|..++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5689999999999999987 4667888999999999999999999999998874
No 222
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.96 E-value=0.15 Score=64.06 Aligned_cols=197 Identities=18% Similarity=0.108 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 157 SADGRQLLESSKTAL-DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl-~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
..++...+.+|.+++ ...++++|..++.+++.++++ .........+.+.|+.+|...+... |+.+++++++.++..
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 345788899999888 678999999999999999765 2222234566778899999988877 999999999988652
Q ss_pred cCCCChhhHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001110 236 LGLDHPDTMKSYGDL-AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 314 (1155)
Q Consensus 236 lG~D~p~~a~ay~nL-A~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALe 314 (1155)
.+.....++.-+ ...+...+++..|++.++....+.... | +....+.+....|.++...+..+++++.++++..
T Consensus 133 ---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~-d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 133 ---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-G-DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred ---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-C-CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 222223333333 333334489999999999999887642 2 2223344455567888888989999999999988
Q ss_pred HHHHh--cCCCcHHHHHHHHHHHHH--HHHcCChhHHHHHHHHHHHHHHHH
Q 001110 315 CNQRL--LGPDHIQTAASYHAIAIA--LSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 315 i~ek~--lG~dhp~~a~a~~nLA~i--y~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
..... .+..++....++..+-.+ +...|+++.+...+++.-+.+.+.
T Consensus 208 ~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~ 258 (608)
T PF10345_consen 208 QARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI 258 (608)
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 77654 222244444455444443 346678778887776655555443
No 223
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.95 E-value=0.0082 Score=65.67 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=83.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHH
Q 001110 214 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-----HPNTAAT 288 (1155)
Q Consensus 214 ~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d-----hp~~a~a 288 (1155)
....+++|+..|.-|+-.++- .+.++...+..+..+|++|..+|+-+....++++|++.+.+.+... ..+...+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 355789999999999887654 3556667899999999999999999888889999998887765332 2245678
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 289 YINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 289 ~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
++.+|.++.+.|++++|..+|.+++...
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 8899999999999999999999988653
No 224
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.95 E-value=0.0028 Score=71.91 Aligned_cols=96 Identities=17% Similarity=0.121 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 205 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 284 (1155)
Q Consensus 205 l~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~ 284 (1155)
+-..|.-|+.+|.|++|+++|.+++.+ +|.....+.|.|..|+++.+|..|..-+..|+.+-+ .
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--------~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--------L 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--------H
Confidence 345688999999999999999999987 355667889999999999999999999999998733 3
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 285 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 285 ~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
...+|...|.+...+|+..+|.+-++.+|++-
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 57889999999999999999999999999874
No 225
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.072 Score=60.98 Aligned_cols=262 Identities=12% Similarity=0.004 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~-~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...+++|..+...|++++-..+....-..+..+ ..+..+.....|-..+. .-+.++.-+.++..+++.+.+. ..
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e--kR 123 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSV---SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE--KR 123 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH--hH
Confidence 457888999999999988777666655554433 12334444444444333 3345667777888888876542 01
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
....-..-..|..+|+..++|.+|+......+.-+++. ++.......+..=..+|+.+.+..+|...+..|.......
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 11122334568899999999999999999888877775 3445556666666788888899999988888877666554
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HHHHhHHHHHHHHhcCCCC
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY--FESKAFEQQEAARNGTRKP 397 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~--l~qk~~e~AeAi~~~~~~~ 397 (1155)
+-+. ...+..-..=|.++....||.-|..||-+|++-|... .++.....++.++.. +.....+.-.++.......
T Consensus 202 YcpP-qlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l 278 (411)
T KOG1463|consen 202 YCPP-QLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLAL 278 (411)
T ss_pred ccCH-HHHHHHHHhccceeecccccchHHHHHHHHHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHH
Confidence 4321 2234444556778888899999999999999887553 455666666666543 3332223222222111111
Q ss_pred chhhhhcCCCcHHHHHHHHHHHH--HHcCChHHHHHHHHHHHH
Q 001110 398 DASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYVAK 438 (1155)
Q Consensus 398 ~~~~a~~~~~svaelL~~Lg~~y--~~qGdyeeAle~yeKALe 438 (1155)
. ......+++..++.++ +.+.+|+.|+.-|++-|.
T Consensus 279 ~------y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 279 K------YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred h------ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 1 1112345666677776 556788888888877554
No 226
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.86 E-value=0.011 Score=67.52 Aligned_cols=138 Identities=23% Similarity=0.171 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G--dydeAle~~eKALei~er~lG~ 238 (1155)
+.+.-.-.+++..++++.|.+.++.+-++ +.+..-+....|++.+..| .+.+|.-+|++..+
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~--------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-------- 195 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI--------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD-------- 195 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC--------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------
Confidence 33444566889999999999888775433 2222223333344555555 58888888887433
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCh-HHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-HVALRYLHKALKCNQ 317 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~-deAle~lekALei~e 317 (1155)
..+.....++.+|.++..+|+|++|.+.+++|+.. ++....++.|++.+...+|+. +.+.+++.+....
T Consensus 196 ~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-- 265 (290)
T PF04733_consen 196 KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-- 265 (290)
T ss_dssp CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--
T ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--
Confidence 22345778999999999999999999999998752 355677899999999999998 5566666664443
Q ss_pred HhcCCCcHHH
Q 001110 318 RLLGPDHIQT 327 (1155)
Q Consensus 318 k~lG~dhp~~ 327 (1155)
.++|+.+
T Consensus 266 ---~p~h~~~ 272 (290)
T PF04733_consen 266 ---NPNHPLV 272 (290)
T ss_dssp ---TTTSHHH
T ss_pred ---CCCChHH
Confidence 2566654
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.41 Score=59.03 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=19.7
Q ss_pred CccHHHHHHHHHHHHHhhchhhccccc
Q 001110 79 NVHPLVWRWLELFLMKRYEWDLNGLNF 105 (1155)
Q Consensus 79 ~~~~llwk~I~~~lk~rf~y~l~~~~~ 105 (1155)
.-++-+|+.+.+.+.++..+.-++..|
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AF 715 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAF 715 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhh
Confidence 468899999988887777766555443
No 228
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.83 E-value=0.023 Score=60.21 Aligned_cols=133 Identities=15% Similarity=0.041 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
.-+.+|..+...|++.+|...|++++.- . .......+..+++..+..+++..|...+++..+... ..
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG------~-fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p------a~ 157 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSG------I-FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP------AF 157 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcc------c-cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC------cc
Confidence 4567788888999999999999999863 1 223355778899999999999999999988776521 11
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
........+|..|..+|++.+|...|+.++..+ ++ .......+.++..+|+.++|..-|....+..
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg----~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY-----PG----PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CC----HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 233455668999999999999999999999863 11 2344456889999999999988777666554
No 229
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.80 E-value=0.081 Score=52.46 Aligned_cols=116 Identities=23% Similarity=0.175 Sum_probs=87.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CC-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~---d~-p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..|...+..|-|++|..-|.+|+++.+.+-.. +| -..+-|+..|+..+..+|+|++++....+||..+.+. |.
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-GE 90 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR-GE 90 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-cc
Confidence 3445667788899999999999999998766322 12 1347788999999999999999999999999998775 33
Q ss_pred CChh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 239 DHPD----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 279 (1155)
Q Consensus 239 D~p~----~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G 279 (1155)
-+.+ .+.+.++.|..+..+|+.++|+..|+.+-++.....|
T Consensus 91 L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 91 LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 3332 3456678899999999999999999999988766444
No 230
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.80 E-value=0.14 Score=58.71 Aligned_cols=253 Identities=15% Similarity=0.099 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~-~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...+..+...+..++++++..++.++.......+...... ...+|..|..++ .+.+.+++..+.......
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq-~L~Elee~~~~~~~~~~~-------- 100 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ-QLVELEEIIELKSNLSQN-------- 100 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh-HHHHHHHHHHHHHhhccc--------
Confidence 3444555566689999999999999987765443221111 122232222222 222333333333211100
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G--~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
+..... .+-..-.++..........+..+.+...++. ......+.++..++.+....|+++.|..++.++.....
T Consensus 101 -~~~~~~--l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~ 177 (352)
T PF02259_consen 101 -PQDLKS--LLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP 177 (352)
T ss_pred -HHHHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC
Confidence 000000 0111111222222333444444444433332 12345678899999999999999999999998776431
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ-ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 396 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALe-I~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~ 396 (1155)
. .......+.+..+.++...|+..+|+..++..+. .+....+...... ...++.. .....
T Consensus 178 ~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~--~~~~~~~-------------~~~~~ 238 (352)
T PF02259_consen 178 S----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE--LKSGLLE-------------SLEVI 238 (352)
T ss_pred c----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH--Hhhcccc-------------ccccc
Confidence 1 1111445667789999999999999999888776 3322221111111 0000000 00000
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHhhhhc
Q 001110 397 PDASIASKGHLSVSDLLDYINPSHDTK------GRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 397 ~~~~~a~~~~~svaelL~~Lg~~y~~q------GdyeeAle~yeKALeL~~kl~ 444 (1155)
.............+.++..+|.....+ +++++++.+|+++.++.+...
T Consensus 239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 000001111224567788888888777 899999999999999887655
No 231
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0048 Score=67.41 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 204 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 283 (1155)
Q Consensus 204 al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp 283 (1155)
-+..-|..|+.-..|+.|+..|.+||.+ .|..+..|.|-|.+|+.+.+++.+..-.++|+++ .+
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~ 75 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DP 75 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------Ch
Confidence 3445577778888999999999999987 5778889999999999999999999999999997 57
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 284 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 284 ~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
..+...+.+|..+.....|++|+..+++|+.+.+..
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 788999999999999999999999999999988654
No 232
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.70 E-value=0.036 Score=58.86 Aligned_cols=127 Identities=19% Similarity=0.133 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCh
Q 001110 223 IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV 302 (1155)
Q Consensus 223 e~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~ 302 (1155)
+-++.-|.-++..++ ...+..++..+|..|.+.|+++.|++.|.++.+.. ...-.....+.++-.+....+++
T Consensus 17 ~~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 17 EKLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCH
Confidence 334444444444332 34667889999999999999999999999988753 22334678888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 303 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 303 deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
.....++.+|-.+... |.+..........-|..+...++|.+|...|-.+...+
T Consensus 90 ~~v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEK--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999999998865 23322333344456777778899999999887776443
No 233
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.12 Score=57.46 Aligned_cols=139 Identities=13% Similarity=0.130 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 202 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 281 (1155)
Q Consensus 202 A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d 281 (1155)
..+.+.+..++.-+|+|.-.+..+.+.++. +.+........||.+.+..|+.+.|..||++.-+...++.+
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~-- 247 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG-- 247 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--
Confidence 346778888999999999999999998873 23444556677899999999999999999987665544322
Q ss_pred ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 282 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 282 hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
-........+.+.+|...++|..|...|.+++..- +..+.+-++-|.|+...|+..+|++.++.++++
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22335567788999999999999999998877642 345566778899999999999999988887765
No 234
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.60 E-value=0.44 Score=55.69 Aligned_cols=231 Identities=13% Similarity=-0.051 Sum_probs=145.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 001110 166 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 244 (1155)
Q Consensus 166 lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~-A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a 244 (1155)
-++..+..|+|+.|.+-|+-.+.. |++ ..-+..|-.--..+|+.+.|..|.+.|.... |...
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl~d---------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~ 188 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAMLDD---------PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLP 188 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCc
Confidence 356667799999999999877643 332 1223333334457899999999999987763 4444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCC
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 322 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~--~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~ 322 (1155)
.+...+=...+..|+++.|+++.+....... .+++-.+ .+..+.--+.... .-+...|...-.+++++.
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~------ 259 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLA------ 259 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC------
Confidence 5555555566789999999999988776432 2333222 2223333333332 234677777777777764
Q ss_pred CcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HHHHhHHHHHHHHhcCCCCchh
Q 001110 323 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY--FESKAFEQQEAARNGTRKPDAS 400 (1155)
Q Consensus 323 dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~--l~qk~~e~AeAi~~~~~~~~~~ 400 (1155)
+...-.-..-+..|+..|+..++-..++.+.+. .-||.....+..... .-....+.++.+. ...
T Consensus 260 --pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~lY~~ar~gdta~dRlkRa~~L~--slk---- 325 (531)
T COG3898 260 --PDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALLYVRARSGDTALDRLKRAKKLE--SLK---- 325 (531)
T ss_pred --CccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHHHHHhcCCCcHHHHHHHHHHHH--hcC----
Confidence 333344445688999999999999999888864 668887665543321 1111122222221 111
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 401 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 401 ~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
+.-.+.....+..-..-|+|..|...-+.+..+.+.
T Consensus 326 ------~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 326 ------PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred ------ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 123345556677778889999999888888776654
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.60 E-value=0.056 Score=54.67 Aligned_cols=113 Identities=24% Similarity=0.226 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--------------ChhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY--------------HRMTAGAYSLLAVVLYHTGDFNQATIYQQ 226 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d--------------~p~~A~al~nLG~vy~~~GdydeAle~~e 226 (1155)
..+...|......|+...++..+.+++.++..-+-.+ ......++..++..+...|++++|+.+++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 4455556667778899999999999998865322111 12234566778888999999999999999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 227 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 281 (1155)
Q Consensus 227 KALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d 281 (1155)
+++.+ +|..-.+|..+-.+|..+|++.+|++.|++....+..-+|..
T Consensus 87 ~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 87 RALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 99997 577778899999999999999999999999999888766643
No 236
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.54 E-value=0.012 Score=69.41 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q 001110 200 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD--TMKSYGDLAVFYYRLQHTELALKYVKRALY-LLHL 276 (1155)
Q Consensus 200 ~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~--~a~ay~nLA~iy~~lG~yeeAle~yekALe-i~e~ 276 (1155)
....++...+..++..|+|.+|.+.+... .+.+...|...+. .+..++|||.+++++|.|..+..+|.+||. .+..
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 44567788899999999999999877543 2222221222222 355678999999999999999999999996 3333
Q ss_pred hc-C--C------CChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 001110 277 TC-G--P------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 339 (1155)
Q Consensus 277 l~-G--~------dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~ 339 (1155)
+. | + .......+++|.|..|...|+.-.|.++|.+|...+.+ ....|..||.++.
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~--------nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR--------NPRLWLRLAECCI 380 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHH
Confidence 21 1 0 01223678899999999999999999999999998843 2366788887775
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.43 E-value=0.73 Score=52.32 Aligned_cols=79 Identities=22% Similarity=0.184 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH-hc-CCCC----hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001110 157 SADGRQLLESSKTALDKG-KLEDAVTYGTKALAKLVA-VC-GPYH----RMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 229 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~G-dyeeAle~~~eALel~e~-i~-G~d~----p~~A~al~nLG~vy~~~GdydeAle~~eKAL 229 (1155)
...++.+|+.|...+..+ ++++|..++++|++++.. .- ...+ .....++..|+.+|...+.++.... ..+++
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l 110 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNAL 110 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHH
Confidence 456889999999999999 999999999999999755 11 1122 3457789999999999988764443 44555
Q ss_pred HHHHHhc
Q 001110 230 DINEREL 236 (1155)
Q Consensus 230 ei~er~l 236 (1155)
...+..+
T Consensus 111 ~~l~~e~ 117 (278)
T PF08631_consen 111 RLLESEY 117 (278)
T ss_pred HHHHHhC
Confidence 5554443
No 238
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.34 E-value=0.041 Score=61.12 Aligned_cols=226 Identities=12% Similarity=0.032 Sum_probs=137.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001110 215 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 294 (1155)
Q Consensus 215 ~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~ 294 (1155)
..+.++|+.-|++.+++- |..-..-..++-.+-.+++++++|++-++.|.+.|...+...-.++... +.+++-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHH
Confidence 347899999999999873 3333445678888999999999999999999999988766544443221 2222222
Q ss_pred HHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 001110 295 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 374 (1155)
Q Consensus 295 iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~ 374 (1155)
.-....+.+.-..+|+..|+..+... +.......-..||.+|+..++|.+-...+++..+-++.-.|.++.+-..-+.
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 22344556666677877777665431 1111223345689999999999998888888888887777777654322221
Q ss_pred HHH------HHHHHhHHHHHHHHhcCCCCchhhhhcCCCcH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhcCCC
Q 001110 375 WLE------YFESKAFEQQEAARNGTRKPDASIASKGHLSV-SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDN 447 (1155)
Q Consensus 375 ~La------~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~sv-aelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~~e~ 447 (1155)
-+. |..++....-++++....+...++ + |+.+ ..+-..=|..+...|++++|-.-|=.|.+-++..++..
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI--P-HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspR 268 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAI--P-HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR 268 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC--C-chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcc
Confidence 111 223333333334443333322111 1 2222 22222334555677888888777777777776666555
Q ss_pred CCCC
Q 001110 448 NLTS 451 (1155)
Q Consensus 448 ~t~~ 451 (1155)
.++.
T Consensus 269 RttC 272 (440)
T KOG1464|consen 269 RTTC 272 (440)
T ss_pred hhHH
Confidence 5544
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.33 E-value=0.095 Score=53.00 Aligned_cols=109 Identities=22% Similarity=0.180 Sum_probs=78.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC--C------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001110 207 LLAVVLYHTGDFNQATIYQQKALDINERELGLD--H------------PDTMKSYGDLAVFYYRLQHTELALKYVKRALY 272 (1155)
Q Consensus 207 nLG~vy~~~GdydeAle~~eKALei~er~lG~D--~------------p~~a~ay~nLA~iy~~lG~yeeAle~yekALe 272 (1155)
..|......++...++..+++++.++.--+-.+ . .....++..++..+...|++++|+.++++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 335555566788888888888888765321111 1 12345667788899999999999999999998
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCC
Q 001110 273 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 323 (1155)
Q Consensus 273 i~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~d 323 (1155)
+ +|..-.++..+-.+|...|+..+|+..|++..+...+-+|..
T Consensus 91 ~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 91 L--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp H--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred c--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 6 677778899999999999999999999999999888776654
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.078 Score=60.56 Aligned_cols=167 Identities=14% Similarity=0.007 Sum_probs=127.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 001110 165 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 244 (1155)
Q Consensus 165 ~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a 244 (1155)
..+.+.+..|++.+|-....+.|+- +|....++..--.+|+.+|+...-...++|.+... ..|-|...
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~s 175 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYS 175 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHH
Confidence 3344566788988888888887764 45555566666678888899888888888877642 34556667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCc
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 324 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dh 324 (1155)
.....++..+.+.|-|++|++..++++++ ++....+...++.++...|++.++.++..+.-+..+. ..
T Consensus 176 Yv~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~ 243 (491)
T KOG2610|consen 176 YVHGMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SW 243 (491)
T ss_pred HHHHHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hh
Confidence 77778899999999999999999999987 3344666778899999999999999998887666532 12
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 325 IQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 325 p~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
......|...|.+|..-+.|+.|++.|.+-+
T Consensus 244 mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 244 MLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 2334556778888888899999999998643
No 241
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=1.2 Score=50.03 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=109.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~ 242 (1155)
+..-|.+|...|++++|+...+....+ .+...--.++.++.+++-|...+++..++.+.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided-------- 169 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED-------- 169 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------
Confidence 344577889999999999988773332 22333345667778889998888888876432
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCC
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 322 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~ 322 (1155)
.++..||..+...- .+-+-++.|..+++.+.++. +-+..+++.+|.+...+|+|++|...++.||.-.
T Consensus 170 --~tLtQLA~awv~la---~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd------ 237 (299)
T KOG3081|consen 170 --ATLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD------ 237 (299)
T ss_pred --HHHHHHHHHHHHHh---ccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc------
Confidence 23444555544321 11112445555555554433 3456778899999999999999999999999754
Q ss_pred CcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 001110 323 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 372 (1155)
Q Consensus 323 dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~a 372 (1155)
.....++.|+-.+-...|.-.++..-+-.-+. ...+.|+.+...
T Consensus 238 --~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk----~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 238 --AKDPETLANLIVLALHLGKDAEVTERNLSQLK----LSHPEHPFVKHL 281 (299)
T ss_pred --CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----hcCCcchHHHHH
Confidence 22356677777777778888776654432221 235677655433
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.26 E-value=0.07 Score=63.98 Aligned_cols=130 Identities=18% Similarity=0.138 Sum_probs=99.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----
Q 001110 208 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP---- 283 (1155)
Q Consensus 208 LG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp---- 283 (1155)
+-.-.++..+...-+++.++||++. ++.+.+|..||.- ...-..+|+++|++|++..+..++.+..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~ 243 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHH 243 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence 3344456778899999999999984 6667888777752 2344789999999999988877665310
Q ss_pred -------------hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHH
Q 001110 284 -------------NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 350 (1155)
Q Consensus 284 -------------~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~ 350 (1155)
-...+-..||++..++|+.++|++.++..++... ......++.+|..++..++.|.++...
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 0134557899999999999999999998876541 123556889999999999999999887
Q ss_pred HHH
Q 001110 351 EQT 353 (1155)
Q Consensus 351 lkk 353 (1155)
+.+
T Consensus 318 L~k 320 (539)
T PF04184_consen 318 LAK 320 (539)
T ss_pred HHH
Confidence 765
No 243
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.053 Score=59.70 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---h-------hhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH---R-------MTAGAYSLLAVVLYHTGDFNQATIYQQKAL 229 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~---p-------~~A~al~nLG~vy~~~GdydeAle~~eKAL 229 (1155)
...+.+.|.-++..|+|.+|...|++|+...+.+.-... + .....+.|++.|+...|+|-+++++....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345778899999999999999999999988776543322 2 234457899999999999999999998888
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 230 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 230 ei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
.. ++....+|+..|..+...-+.++|..-|.++|++
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 75 6788999999999999999999999999999985
No 244
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.17 E-value=0.051 Score=57.76 Aligned_cols=117 Identities=15% Similarity=0.061 Sum_probs=90.1
Q ss_pred hhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001110 151 KQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 230 (1155)
Q Consensus 151 K~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALe 230 (1155)
+...........+..+|..|+..|++++|++.|.++.+.+.. .......+.++-.+....+++.....+..+|-.
T Consensus 27 ~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 27 KSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334445555778999999999999999999999998876422 245567888889999999999999999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001110 231 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 274 (1155)
Q Consensus 231 i~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~ 274 (1155)
+.+. |.|-.........-|..+...++|.+|.+.|..++..+
T Consensus 102 ~~~~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 102 LIEK--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHhc--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 8776 33322233344456777788999999999998876543
No 245
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.09 E-value=0.95 Score=50.72 Aligned_cols=207 Identities=10% Similarity=0.027 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
.++-++-.+++.+|+|++-.+.|.+.|.........++.+ .+.+.+-..-....+.+--.++|+..|+..+.. .+.
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNe 141 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYISTSKNMDLLQEFYETTLDALKDA--KNE 141 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcc
Confidence 4566778889999999999999999998876654443322 122222221122334444555666666655443 122
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP----NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp----~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.....+-..||.+|+..++|.+-.+.+++.-.-++.--|.++. ....+|..--.+|..+++-.+-..+|++||.+.
T Consensus 142 RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 142 RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 2334455678999999999988777777766555544444432 345566666678888988888889999999886
Q ss_pred HHhcCCCcHHHH-HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 001110 317 QRLLGPDHIQTA-ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 377 (1155)
Q Consensus 317 ek~lG~dhp~~a-~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La 377 (1155)
..+ .||.+. .+.-.=|..+.+.|+|++|..-|=+|+.-+.+ ...++...++.+|.
T Consensus 222 SAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE---sGspRRttCLKYLV 277 (440)
T KOG1464|consen 222 SAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE---SGSPRRTTCLKYLV 277 (440)
T ss_pred ccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc---cCCcchhHHHHHHH
Confidence 443 345443 33334467788889999998877666654433 34555556666554
No 246
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.046 Score=62.45 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.|..+-+.|..|+...+|..|+..|.+.|..- + .+....+.+|.|.|.+.+..|+|..|+.-+.+|+.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---c-~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------- 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK---C-ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------- 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc---C-CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 57888899999999999999999999998762 1 233456788999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 274 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~ 274 (1155)
.|....+|+.=|.|++.+.++++|..+++..+.+.
T Consensus 149 -~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 -KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred -CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 56778899999999999999999999999987764
No 247
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.82 E-value=0.13 Score=48.79 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=62.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001110 254 YYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 332 (1155)
Q Consensus 254 y~~lG~yeeAle~yekALei~e~l~G~d-hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~ 332 (1155)
..+.|+|..|++.+.+..+......... ......++.++|.++...|++++|+..+++|+++.++. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4578999999999999999876643222 12356678899999999999999999999999999876 44444555554
Q ss_pred HHHHH
Q 001110 333 AIAIA 337 (1155)
Q Consensus 333 nLA~i 337 (1155)
.++.+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 44444
No 248
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.80 E-value=0.13 Score=63.97 Aligned_cols=149 Identities=18% Similarity=0.144 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 001110 176 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----GDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 250 (1155)
Q Consensus 176 yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~-----GdydeAle~~eKALei~er~lG~D~p~~a~ay~nL 250 (1155)
..+|..+++.+... ....+...+|.+|..- .|.+.|+.+|+.|..-+.+.. +.....+.+.|
T Consensus 228 ~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~l 294 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGL 294 (552)
T ss_pred hhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccHH
Confidence 56778888777655 3345677788888754 689999999999988322110 11133467889
Q ss_pred HHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHHHHHhcCC
Q 001110 251 AVFYYRLQ-----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG---NVHVALRYLHKALKCNQRLLGP 322 (1155)
Q Consensus 251 A~iy~~lG-----~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG---~~deAle~lekALei~ek~lG~ 322 (1155)
|.+|.... +++.|+.+|.++-.. | + ..+.+.||.+|.... ++..|.+||..|...-
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~-----g--~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G------ 358 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAEL-----G--N---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG------ 358 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhc-----C--C---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC------
Confidence 99998853 678899999998764 2 2 346778888888765 5678999998887632
Q ss_pred CcHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHH
Q 001110 323 DHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 323 dhp~~a~a~~nLA~iy~~----lGdyeeAle~lkkALeI 357 (1155)
...+++++|.+|.. .-+...|..+++++.+.
T Consensus 359 ----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 359 ----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred ----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 23566778888763 34778899999988754
No 249
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.089 Score=57.99 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh----------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001110 202 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP----------DTMKSYGDLAVFYYRLQHTELALKYVKRAL 271 (1155)
Q Consensus 202 A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p----------~~a~ay~nLA~iy~~lG~yeeAle~yekAL 271 (1155)
..++..-|+-++.+|+|.+|...|+.|+...+...-...| .....+.|++.|+...|+|-++++.....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999887765332222 123568899999999999999999998887
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 272 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 272 ei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.. +|....+|+.-|.+....-+.++|..-|.++|++-
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 64 78889999999999999999999999999999863
No 250
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.76 E-value=0.11 Score=49.24 Aligned_cols=83 Identities=17% Similarity=0.072 Sum_probs=63.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 001110 169 TALDKGKLEDAVTYGTKALAKLVAVCGPY-HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 247 (1155)
Q Consensus 169 ~yl~~GdyeeAle~~~eALel~e~i~G~d-~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay 247 (1155)
..+..|+|.+|++.+.+.++......... ......++.++|.++...|++++|+..+++|+.+.++. .|......++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al 84 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYAL 84 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHH
Confidence 34678999999999999999876653222 12356678899999999999999999999999999885 4444555555
Q ss_pred HHHHHH
Q 001110 248 GDLAVF 253 (1155)
Q Consensus 248 ~nLA~i 253 (1155)
..+..+
T Consensus 85 ~~~~~l 90 (94)
T PF12862_consen 85 SWLANL 90 (94)
T ss_pred HHHHHH
Confidence 555443
No 251
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.72 E-value=0.98 Score=50.98 Aligned_cols=144 Identities=19% Similarity=0.120 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q 001110 161 RQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDIN 232 (1155)
Q Consensus 161 ~~Ll~lG~~yl~----~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~----~GdydeAle~~eKALei~ 232 (1155)
...+.++..|.. ..+..+|+.+|..+.+. ....+.+.||.+|.. ..|+.+|..+|++|...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~- 142 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL- 142 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-
Confidence 445555555543 34578888888855432 345678889999987 45999999999999875
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCC
Q 001110 233 ERELGLDHPDTMKSYGDLAVFYYRLQ-------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGN 301 (1155)
Q Consensus 233 er~lG~D~p~~a~ay~nLA~iy~~lG-------~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~----lG~ 301 (1155)
| +..-..+...||.+|..-. +...|+.+|.++-... ...+.++||.+|.. ..+
T Consensus 143 ----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----------~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 143 ----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----------NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred ----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----------CHHHHHHHHHHHHcCCCCCcC
Confidence 1 2211445778888887642 2236777777776541 35677889988865 347
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 001110 302 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 342 (1155)
Q Consensus 302 ~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lG 342 (1155)
+.+|..+|.+|-+.- + ...++.++ ++...|
T Consensus 207 ~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcC
Confidence 899999999988742 2 46667788 555555
No 252
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.72 E-value=0.25 Score=56.69 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=97.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHH
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD-INER 234 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALe-i~er 234 (1155)
....+..++..+..+...|+++.|..++.++...... .......+....+.+++..|+..+|+..++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 5566788999999999999999999999987765211 1122455677789999999999999999988887 3222
Q ss_pred hc-------------------------CCCChhhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 235 EL-------------------------GLDHPDTMKSYGDLAVFYYRL------QHTELALKYVKRALYLLHLTCGPSHP 283 (1155)
Q Consensus 235 ~l-------------------------G~D~p~~a~ay~nLA~iy~~l------G~yeeAle~yekALei~e~l~G~dhp 283 (1155)
.. .......+.++..+|.....+ +.+++++.+|++|+.+ ++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~ 289 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DP 289 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------Ch
Confidence 10 111234567888888888888 8889999999999886 45
Q ss_pred hHHHHHHHHHHHHHHC
Q 001110 284 NTAATYINVAMMEEGL 299 (1155)
Q Consensus 284 ~~a~a~~nLA~iy~~l 299 (1155)
....+++.+|..+...
T Consensus 290 ~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKL 305 (352)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5566777777766544
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.69 Score=53.19 Aligned_cols=132 Identities=17% Similarity=0.013 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001110 206 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 285 (1155)
Q Consensus 206 ~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~ 285 (1155)
..-+.+.+..|++.+|-....|.|+- +|....+..---.+++.+|+.+.-...+++.+..+ ..+-|-.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~ 174 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCY 174 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHH
Confidence 33455667789999998888888763 56666666666678888999988888888887653 3455655
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 286 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 286 a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
....-.+|..+...|-|++|.+..++|+++. +...-+.+.++.++...|++.++.++..+.-+.
T Consensus 175 sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~ 238 (491)
T KOG2610|consen 175 SYVHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD 238 (491)
T ss_pred HHHHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc
Confidence 6666677888999999999999999999885 234566778899999999999999988765443
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.53 Score=53.52 Aligned_cols=215 Identities=14% Similarity=0.126 Sum_probs=125.0
Q ss_pred HhhchhhccccccccchHHHHHHHHHHHhHHHhhcccCCCCCCCc-------hHHhHHhhchhhhhhcCChHHHHHHHHH
Q 001110 94 KRYEWDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPF-------RKIDVVSLVPVHKQAACSSADGRQLLES 166 (1155)
Q Consensus 94 ~rf~y~l~~~~~~~l~kl~LLreL~~k~GiqL~ardY~fd~a~~f-------~~eDI~~L~pi~K~~~~~s~~A~~Ll~l 166 (1155)
.+++|.+..-+.+.- ..+..++|++-...-|-|....+. -++.|..++..+-.. .....+..
T Consensus 72 ~~G~f~LakvN~D~~------p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~-----~~e~~~~~ 140 (304)
T COG3118 72 YKGKFKLAKVNCDAE------PMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA-----EEEEALAE 140 (304)
T ss_pred hCCceEEEEecCCcc------hhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh-----HHHHHHHH
Confidence 355676666555421 466778999887777776544321 122333333222111 34456677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 001110 167 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 246 (1155)
Q Consensus 167 G~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~a 246 (1155)
+......|++.+|...|..++.. .+....+...|+.+|...|+.+.|...+...=.- ........
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-------~~~~~~~~ 205 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-------AQDKAAHG 205 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-------chhhHHHH
Confidence 78889999999999999999987 3555778899999999999999998877542110 00111111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHH
Q 001110 247 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 326 (1155)
Q Consensus 247 y~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~ 326 (1155)
+..--.++.+.....+...+-++ +. .+|+...+-+.+|..|...|+++.|++.+-..++.. .|....
T Consensus 206 l~a~i~ll~qaa~~~~~~~l~~~-~a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d---~~~~d~- 272 (304)
T COG3118 206 LQAQIELLEQAAATPEIQDLQRR-LA--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD---RGFEDG- 272 (304)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHH-HH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---ccccCc-
Confidence 11111222222222222222111 11 246566777889999999999999988886655542 222222
Q ss_pred HHHHHHHHHHHHHHcCChhHHHH
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQ 349 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle 349 (1155)
.....|-.++...|.-+.+..
T Consensus 273 --~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 273 --EARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred --HHHHHHHHHHHhcCCCCHHHH
Confidence 233344555555665444433
No 255
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.45 Score=51.21 Aligned_cols=99 Identities=14% Similarity=-0.020 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCc
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 324 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dh 324 (1155)
.+...+|..+...+++++|+..++.++..- .|......+-.+||.+...+|++++|+..+...- ++
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~ 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EE 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cc
Confidence 445678889999999999999999998642 2233345566789999999999999988876532 23
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 325 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 325 p~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
...+......|.++..+|+-++|+..|++|++.
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 345555667899999999999999999999976
No 256
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=5.3 Score=51.77 Aligned_cols=189 Identities=14% Similarity=0.052 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 280 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~ 280 (1155)
....|..||.+....|...+|++-|-|| |+ ...|...-.+..+.|.|++-++|+..|..-.++.+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika----------dD---ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i- 1168 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA----------DD---PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI- 1168 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc----------CC---cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc-
Confidence 3457899999999999999999888765 22 245677777778888898888888877664332110
Q ss_pred CChhHHHHH---------------------HHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 001110 281 SHPNTAATY---------------------INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 339 (1155)
Q Consensus 281 dhp~~a~a~---------------------~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~ 339 (1155)
+.....+| -.+|.-++..|.|+.|.-+|. ....+..||..+.
T Consensus 1169 -d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~----------------~vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1169 -DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS----------------NVSNFAKLASTLV 1231 (1666)
T ss_pred -hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH----------------HhhhHHHHHHHHH
Confidence 00111111 122333333333333322222 1223456777788
Q ss_pred HcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHH
Q 001110 340 LMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPS 419 (1155)
Q Consensus 340 ~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~ 419 (1155)
.+|+|..|....++|-.+ +++..-. .+....+.+..++.. ....- -.++-+..+-..
T Consensus 1232 ~LgeyQ~AVD~aRKAns~----------ktWK~Vc-faCvd~~EFrlAQiC---GL~ii---------vhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKANST----------KTWKEVC-FACVDKEEFRLAQIC---GLNII---------VHADELEELIEY 1288 (1666)
T ss_pred HHHHHHHHHHHhhhccch----------hHHHHHH-HHHhchhhhhHHHhc---CceEE---------EehHhHHHHHHH
Confidence 888888888877766432 2221111 111222222222211 11111 123345566778
Q ss_pred HHHcCChHHHHHHHHHHHHHhhhh
Q 001110 420 HDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 420 y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
|...|-+++-+.+++.+|-+.+.-
T Consensus 1289 Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred HHhcCcHHHHHHHHHhhhchhHHH
Confidence 899999999999998888765543
No 257
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.55 E-value=0.77 Score=54.29 Aligned_cols=152 Identities=16% Similarity=0.064 Sum_probs=107.2
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---------------------CChhhHHHHHHHHHHHH
Q 001110 197 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---------------------DHPDTMKSYGDLAVFYY 255 (1155)
Q Consensus 197 d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~---------------------D~p~~a~ay~nLA~iy~ 255 (1155)
.+|....++..++.++..+|++..|.+++++||-.+++.+.. +......++......+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 378889999999999999999999999999999988854211 12233456666777888
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001110 256 RLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 334 (1155)
Q Consensus 256 ~lG~yeeAle~yekALei~e~l~G~d-hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nL 334 (1155)
+.|-+..|+++++-.+.+ .+. +| ..+++.+-....+.++|+--+++++.......+ ..........+.+
T Consensus 115 ~RG~~rTAlE~~KlLlsL-----dp~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~---~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSL-----DPDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYR---NWLSLLPNFAFSI 184 (360)
T ss_pred hcCcHHHHHHHHHHHHhc-----CCCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh---hhhhhCccHHHHH
Confidence 899999999998877765 333 44 334555666666778887777777655442110 0000122455667
Q ss_pred HHHHHHcCCh---------------hHHHHHHHHHHHHH
Q 001110 335 AIALSLMEAY---------------PLSVQHEQTTLQIL 358 (1155)
Q Consensus 335 A~iy~~lGdy---------------eeAle~lkkALeI~ 358 (1155)
|.++...++- +.|...+++|+..+
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 8888888887 89999999998764
No 258
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.46 E-value=0.074 Score=56.41 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 001110 176 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF---NQATIYQQKALDINERELGLDHPDTMKSYGDLAV 252 (1155)
Q Consensus 176 yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gdy---deAle~~eKALei~er~lG~D~p~~a~ay~nLA~ 252 (1155)
|+.|.+.++..+.. +|..+..+++-|.++..+.++ .++..+++.|+.-++..+.. +|+...+++++|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHH
Confidence 45555555555544 577788899999888877655 44666666666665554332 4777889999999
Q ss_pred HHHHcCC----HHHHHHHHHHHHHHHHH
Q 001110 253 FYYRLQH----TELALKYVKRALYLLHL 276 (1155)
Q Consensus 253 iy~~lG~----yeeAle~yekALei~e~ 276 (1155)
+|..++. ..+|..+|++|...+++
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 9988765 35677777777776654
No 259
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.065 Score=61.25 Aligned_cols=106 Identities=24% Similarity=0.213 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
...+..|-.-|.-|+...+|..|..+|.++|..- + .+.-..+..|.|-|.+...+|+|..|+.-..+|+.+-
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---c-~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~---- 149 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK---C-ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK---- 149 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc---C-CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 3467778888999999999999999999998742 1 2333457789999999999999999999999998864
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
|....+++.=|.++..+..+++|..+++..+++.
T Consensus 150 ----P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 150 ----PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ----cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5567888999999999999999999999887764
No 260
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.46 E-value=0.51 Score=50.84 Aligned_cols=102 Identities=18% Similarity=0.029 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 280 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~ 280 (1155)
-..+...+|..+...+++++|+..++.++... .|......+-.+||.+...+|++|+|+..+...-.
T Consensus 88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-------- 154 (207)
T COG2976 88 AVLAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE-------- 154 (207)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--------
Confidence 34456678899999999999999999998652 23334456677899999999999999987764321
Q ss_pred CChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 281 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 281 dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+-.........|.++...|+-++|+..|++|+...
T Consensus 155 -~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 155 -ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred -ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 22334445567999999999999999999999874
No 261
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.30 E-value=3.4 Score=46.21 Aligned_cols=185 Identities=13% Similarity=0.067 Sum_probs=112.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---C-------hhhHHHHHHHHHHHHhcC--------------CH
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY---H-------RMTAGAYSLLAVVLYHTG--------------DF 218 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d---~-------p~~A~al~nLG~vy~~~G--------------dy 218 (1155)
.+.+.+.++..|+..+|+.-++.=+..+....+.. . ...+.-|..+|.+..... -|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 34556788999999999999999998888776551 1 112233444555443322 12
Q ss_pred HHHHHHHHHHHHHHHHhcC-CC-------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 219 NQATIYQQKALDINERELG-LD-------------------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 219 deAle~~eKALei~er~lG-~D-------------------~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
..|-.+...--..++.... ++ .+.....+..+.........-...++++.+|+..++...
T Consensus 93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~ 172 (247)
T PF11817_consen 93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG 172 (247)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc
Confidence 3333333222222333210 00 000011111111111122334567888899988887642
Q ss_pred CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 001110 279 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 351 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~l 351 (1155)
.......+...+|..|...|+|++|+.+|+.+...+++- ........++..+..++...|+.+..+.+.
T Consensus 173 --~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 173 --QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred --cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 234456667789999999999999999999998777542 344556678888999999999988776654
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.27 E-value=0.037 Score=43.11 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 246 SYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
+|.+||.+|..+|+|++|+++|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999977654
No 263
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.24 E-value=2.1 Score=54.80 Aligned_cols=109 Identities=21% Similarity=0.095 Sum_probs=80.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 001110 171 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 250 (1155)
Q Consensus 171 l~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nL 250 (1155)
+..++|.+|+..+.+.++. ||....+...-|..+.++|++++|..+++ ++... +.+ .-.++..+
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~----~~~---D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGL----KGT---DDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccC----CCC---chHHHHHH
Confidence 4567888888888887765 67777777788999999999999995443 43321 222 34566778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHH
Q 001110 251 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 304 (1155)
Q Consensus 251 A~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~de 304 (1155)
-.||.+++++++|..+|++++.. .|. -..+..+-++|.+.+.|.+
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999874 333 4455566667777776654
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.18 E-value=0.041 Score=42.84 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 288 TYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 288 a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
+|.+||.+|..+|+|++|+.+|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999977644
No 265
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.18 E-value=0.038 Score=41.85 Aligned_cols=33 Identities=6% Similarity=-0.005 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 410 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 410 aelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
++++..+|.+|..+|++++|+.+|++++++.++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 367899999999999999999999999999865
No 266
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.14 E-value=0.72 Score=52.08 Aligned_cols=152 Identities=16% Similarity=0.061 Sum_probs=105.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 001110 169 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHPDTM 244 (1155)
Q Consensus 169 ~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~----GdydeAle~~eKALei~er~lG~D~p~~a 244 (1155)
.....+++..|..++.++-.. ....+...++.+|..- .+..+|+.+|+++.. ....
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~ 109 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLA 109 (292)
T ss_pred cccccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccH
Confidence 334567788888888877652 1125677788877653 467888888885544 2345
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-------ChHHHHHHHHHHH
Q 001110 245 KSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-------NVHVALRYLHKAL 313 (1155)
Q Consensus 245 ~ay~nLA~iy~~----lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG-------~~deAle~lekAL 313 (1155)
.+.++||.+|.. ..++.+|..+|++|... | ++.-..+.+++|.+|..-. +...|+.+|.+|-
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa 182 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA 182 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence 677889999987 45899999999999874 2 2222445777888887642 2236777777766
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHH
Q 001110 314 KCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 314 ei~ek~lG~dhp~~a~a~~nLA~iy~~----lGdyeeAle~lkkALeI 357 (1155)
... ...+.+.||.+|.. ..++.+|..+|++|-+.
T Consensus 183 ~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 183 ELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred Hhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 543 34677888988864 34889999999988753
No 267
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.56 Score=52.88 Aligned_cols=220 Identities=10% Similarity=-0.023 Sum_probs=126.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH----HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 207 LLAVVLYHTGDFNQATIYQQKALDI----NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 207 nLG~vy~~~GdydeAle~~eKALei----~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dh 282 (1155)
.+|+-.....++++|+..|.+.+.- -++. ..+.-.+..+|+.+|...|++..--+......+.+.... .
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---K 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---c
Confidence 3455556667788888777776653 1111 122345778999999999999887777777777766543 3
Q ss_pred hhHHHHHHHHHHH-HHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 283 PNTAATYINVAMM-EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 283 p~~a~a~~nLA~i-y~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
|....+...|-.. -.....++.-+..+...++...+- .........-..+..+|++.|+|.+|+......+.-+++.
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 4444443333332 334456778888888887766442 1111222334567888999999999999998888877776
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhHHHHH-------HHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001110 362 LGPDDLRTQDAAAWLEYFESKAFEQQE-------AARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKT 434 (1155)
Q Consensus 362 lG~dh~~t~~al~~La~l~qk~~e~Ae-------Ai~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~ye 434 (1155)
.+.-...+...+.--.+..-+.....+ ........+.. ..+++-..-|..+....+|.-|..||-
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpq--------lqa~lDL~sGIlhcdd~dyktA~SYF~ 230 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQ--------LQAQLDLLSGILHCDDRDYKTASSYFI 230 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHH--------HHHHHHHhccceeeccccchhHHHHHH
Confidence 443332222222222222222221111 11111111110 122222223444467788999999998
Q ss_pred HHHHHhhhh
Q 001110 435 YVAKVKGNF 443 (1155)
Q Consensus 435 KALeL~~kl 443 (1155)
+|++-+..+
T Consensus 231 Ea~Egft~l 239 (421)
T COG5159 231 EALEGFTLL 239 (421)
T ss_pred HHHhccccc
Confidence 888765544
No 268
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.02 E-value=0.045 Score=41.48 Aligned_cols=30 Identities=37% Similarity=0.613 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001110 202 AGAYSLLAVVLYHTGDFNQATIYQQKALDI 231 (1155)
Q Consensus 202 A~al~nLG~vy~~~GdydeAle~~eKALei 231 (1155)
+.+|+++|.+|..+|++++|+.+|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 468999999999999999999999999997
No 269
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.98 E-value=0.047 Score=40.99 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 410 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 410 aelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
++++..+|.+|..+|++++|+++|++++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 367899999999999999999999999998764
No 270
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.93 E-value=4 Score=48.13 Aligned_cols=229 Identities=14% Similarity=0.053 Sum_probs=134.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 001110 171 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 250 (1155)
Q Consensus 171 l~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nL 250 (1155)
...|+++-|+.|..+|.... |....+....-...+..||++.|+++.+...... +.+.+-.+...+-..-
T Consensus 165 qr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLt 234 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLT 234 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHH
Confidence 46799999999999988773 3344444444445667899999999988766542 2223322222222222
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 001110 251 AVFYY-RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 329 (1155)
Q Consensus 251 A~iy~-~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~ 329 (1155)
+.... -.-+...|...-.+++++ .|+.+-.-..-+..|+..|+..++-..++.+.+. .-||.++.
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~ 300 (531)
T COG3898 235 AKAMSLLDADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIAL 300 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHH
Confidence 22211 123466777777777765 3555555666789999999999999999988765 45776544
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcH
Q 001110 330 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSV 409 (1155)
Q Consensus 330 a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~sv 409 (1155)
. |....--+.++.-++++-.+. .+.+++.....+...- .+..+.+..+.+..+...... ..
T Consensus 301 l-------Y~~ar~gdta~dRlkRa~~L~--slk~nnaes~~~va~a-Alda~e~~~ARa~Aeaa~r~~---------pr 361 (531)
T COG3898 301 L-------YVRARSGDTALDRLKRAKKLE--SLKPNNAESSLAVAEA-ALDAGEFSAARAKAEAAAREA---------PR 361 (531)
T ss_pred H-------HHHhcCCCcHHHHHHHHHHHH--hcCccchHHHHHHHHH-HHhccchHHHHHHHHHHhhhC---------ch
Confidence 4 444444445666677665542 2344544332222111 122222222222111111111 22
Q ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhh
Q 001110 410 SDLLDYINPSHDTK-GRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 410 aelL~~Lg~~y~~q-GdyeeAle~yeKALeL~~k 442 (1155)
..++..|+.+.... ||-.++..++-++++-=+.
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 34677788888665 9999999999999875443
No 271
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.83 E-value=0.22 Score=56.60 Aligned_cols=134 Identities=15% Similarity=0.124 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 204 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 204 al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~-lG~yeeAle~yekALei~e~l~G~dh 282 (1155)
+|..+.....+.+..+.|...|.+|+. +......+|...|.+.+. .++.+.|...|++++..+. .+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CC
Confidence 445555666666668888888888863 123345678888999777 5666669999999998642 23
Q ss_pred hhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 283 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 283 p~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
...+......+...++.+.|..+|++++... ........+|......-...|+++.....++++.+.+
T Consensus 70 ---~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 70 ---PDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3344445577788999999999999998753 1112133456666666677788888887777776654
No 272
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.59 E-value=2.8 Score=50.52 Aligned_cols=186 Identities=13% Similarity=-0.034 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCh-------HHHHHHHHHHHHHHH
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHKALKCNQ 317 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~-------deAle~lekALei~e 317 (1155)
.....||.+++.+++|+.|..+|+.+..-+.. .......+.++-..|.++...+.. ++...+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~--Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN--DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh--chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 34567999999999999999999988876532 111233456666667777666643 477888999888887
Q ss_pred HhcC---CCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHhHHHHHHHH
Q 001110 318 RLLG---PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR---TQDAAAWLEYFESKAFEQQEAAR 391 (1155)
Q Consensus 318 k~lG---~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~---t~~al~~La~l~qk~~e~AeAi~ 391 (1155)
+.-. ........+....+.++...+.+.+|...+-+.... .+ ..+.. ....+..+++.. +.
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~---~l-~~~l~~~~~alllE~~a~~~--------~~- 353 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE---IL-ESDLRPFGSALLLEQAAYCY--------AS- 353 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH---HH-hhhhhhHhhHHHHHHHHHhh--------cc-
Confidence 6211 112245567777888899999998888876655533 11 11111 112222222211 00
Q ss_pred hcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhcCCC
Q 001110 392 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDN 447 (1155)
Q Consensus 392 ~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~~e~ 447 (1155)
.....+. .........+--+..-|..|.+.|+...|+.+|.+|+.++....+..
T Consensus 354 ~~~~~~~--~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~~W~~ 407 (414)
T PF12739_consen 354 LRSNRPS--PGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGKGWSL 407 (414)
T ss_pred cccCCCC--ccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 0000000 00000112233344557788999999999999999999999765443
No 273
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.57 E-value=4 Score=48.44 Aligned_cols=174 Identities=17% Similarity=0.127 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH---TGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~---~GdydeAle~~eKALei~er~lG~D 239 (1155)
...+=..|....+|+.-+.+.+..-.+- ..+-......-..+|.++.+ .|+.++|+..+..++.- +
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p----~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-------~ 212 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALP----TCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-------D 212 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccC----ccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-------c
Confidence 3344445677777877776665443330 01122334456677888887 89999999998887553 2
Q ss_pred ChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRL---------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 310 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~l---------G~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~le 310 (1155)
......+|..+|.+|..+ ..+++|+.+|.++.++- + ....-.|++.++...|+-.+...-++
T Consensus 213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~-~~Y~GIN~AtLL~~~g~~~~~~~el~ 283 (374)
T PF13281_consen 213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------P-DYYSGINAATLLMLAGHDFETSEELR 283 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------c-cccchHHHHHHHHHcCCcccchHHHH
Confidence 334556788888888653 23566777777776652 1 12334677888888887444443333
Q ss_pred HHH-HHHHHhcCCC----cHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 311 KAL-KCNQRLLGPD----HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 311 kAL-ei~ek~lG~d----hp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+.. .+. ..+|.. ....-..+-.++.+....|++++|.+++++++..
T Consensus 284 ~i~~~l~-~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 284 KIGVKLS-SLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHH-HHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 333 222 222211 1112223344566777889999999999988865
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.56 E-value=0.069 Score=40.08 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001110 202 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 232 (1155)
Q Consensus 202 A~al~nLG~vy~~~GdydeAle~~eKALei~ 232 (1155)
+.+++.+|.+|+.+|++++|+.+|++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4678999999999999999999999999873
No 275
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.50 E-value=0.048 Score=65.00 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..+-..+..++...+|+.|+.+|.+|+++ ++..+..+.+.+.++...++|..|+.-+.+|+++
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-------- 67 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL-------- 67 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------
Confidence 344556677788899999999999999998 7888889999999999999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
+|....+|..-|.++..++++.+|+..|+....+
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 4888899999999999999999999888887664
No 276
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.50 E-value=4.3 Score=45.30 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~-~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
.+..+|+++.+.|+|++.+.+.++++... ......=.+.|+.+|-. .|....+...+.....- +. +...
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~-~~--~~~~ 72 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK-EE--NKGN 72 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--TTTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh-hc--ccch
Confidence 46778999999999999999999998772 12223334455555422 22222222222211111 11 1111
Q ss_pred hhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCC--Chh-HHHHHHHHHHHHHHC-----C-----ChHHHH
Q 001110 241 PDTMKSYGDLAVFYYRLQHT-ELALKYVKRALYLLHLTCGPS--HPN-TAATYINVAMMEEGL-----G-----NVHVAL 306 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~y-eeAle~yekALei~e~l~G~d--hp~-~a~a~~nLA~iy~~l-----G-----~~deAl 306 (1155)
... ..+.. ....+. ++=..++..++.+....+-+. .+. .+..+-..|..|..+ | -.++|.
T Consensus 73 ~~~----~~~i~--~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 73 EKQ----VKLIK--DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp HHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence 111 11111 111111 233445556666655533221 121 122222345444422 1 136899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHHcC
Q 001110 307 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLG 363 (1155)
Q Consensus 307 e~lekALei~ek~lG~dhp~~a~a~~nLA~iy~-~lGdyeeAle~lkkALeI~kk~lG 363 (1155)
..|++|+++....+.+.||.......|.+..|+ .+|+.++|.+..++|++-....++
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 999999999999889999998888888888775 589999999999999987766544
No 277
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=94.36 E-value=2.6 Score=57.35 Aligned_cols=157 Identities=20% Similarity=0.095 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhc---C-C---------------
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---G-D--------------- 217 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~---G-d--------------- 217 (1155)
...++....+|..|+..|.+.+|+..|.+|+.+++.. .|+...+.++-.++.+.... | +
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~ 316 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS 316 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence 3457888889999999999999999999999998875 67777888887776554321 1 1
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHHHhcC---CCChh--hHHHHHHHHHHHH
Q 001110 218 -------------------------------------FNQATIYQQKALDINERELG---LDHPD--TMKSYGDLAVFYY 255 (1155)
Q Consensus 218 -------------------------------------ydeAle~~eKALei~er~lG---~D~p~--~a~ay~nLA~iy~ 255 (1155)
...-.+.+++++.+|.+... ...|. .+.+...++.++.
T Consensus 317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence 11122356677777666531 11222 3455666777777
Q ss_pred HcC--------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 256 RLQ--------------------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 256 ~lG--------------------~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
.+. .-.++.++..+++.+....+ ...+.+.+|..+|.+|..+|-..++--+++.++-.
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 776 67788889999988754322 35567889999999999999998888888887776
Q ss_pred HH
Q 001110 316 NQ 317 (1155)
Q Consensus 316 ~e 317 (1155)
..
T Consensus 475 ~~ 476 (1185)
T PF08626_consen 475 LV 476 (1185)
T ss_pred hc
Confidence 63
No 278
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.35 E-value=0.23 Score=52.79 Aligned_cols=104 Identities=12% Similarity=0.053 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCh---HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 001110 260 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV---HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 336 (1155)
Q Consensus 260 yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~---deAle~lekALei~ek~lG~dhp~~a~a~~nLA~ 336 (1155)
|+.|.+.++..... +|..+..+++-|.++..+.++ .++..++++|+.-+++.+.- +|....+++++|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHH
Confidence 34455555544432 566688888888888877555 34666666666555444321 2556688899999
Q ss_pred HHHHcC----ChhHHHHHHHHHHHHHHHHc--CCCCHHHHHH
Q 001110 337 ALSLME----AYPLSVQHEQTTLQILRAKL--GPDDLRTQDA 372 (1155)
Q Consensus 337 iy~~lG----dyeeAle~lkkALeI~kk~l--G~dh~~t~~a 372 (1155)
+|..++ +..+|..+|++|.+.|++.. .|.+..+..+
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 998654 55677788888887777643 3444444333
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.25 E-value=0.094 Score=39.57 Aligned_cols=31 Identities=6% Similarity=-0.005 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 411 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 411 elL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
+++..+|.+|..+|++++|+++|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999986
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.17 E-value=1.2 Score=55.50 Aligned_cols=132 Identities=20% Similarity=0.147 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHH
Q 001110 161 RQLLESSKTALD-----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-----DFNQATIYQQKALD 230 (1155)
Q Consensus 161 ~~Ll~lG~~yl~-----~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G-----dydeAle~~eKALe 230 (1155)
...+.+|.+++. ..+.+.|+.+|+.+..-+...- +.....+.+.||.+|.... ++..|+.+|.+|-.
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 344455555543 3689999999999987211110 1113347888999998743 67889999998876
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC----CChH
Q 001110 231 INERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL----GNVH 303 (1155)
Q Consensus 231 i~er~lG~D~p~~a~ay~nLA~iy~~lG---~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l----G~~d 303 (1155)
. ....+.+.||.+|..-. ++.+|.+||..|... | | ..+++++|.+|..- .+..
T Consensus 322 ~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-----G--~---~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 322 L----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-----G--H---ILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred c----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-----C--C---hHHHHHHHHHHHhCCCcCCCHH
Confidence 4 23457788999988766 568899999988763 2 2 56778888888753 4678
Q ss_pred HHHHHHHHHHHH
Q 001110 304 VALRYLHKALKC 315 (1155)
Q Consensus 304 eAle~lekALei 315 (1155)
.|..+|.+|-+.
T Consensus 382 ~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 382 LAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHHc
Confidence 999999998775
No 281
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.15 E-value=0.55 Score=53.41 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=88.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 001110 165 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHPDT 243 (1155)
Q Consensus 165 ~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~-~GdydeAle~~eKALei~er~lG~D~p~~ 243 (1155)
...+.....+..+.|..+|.+|+.. ......+|...|.+.+. .++.+.|...|+.++..+. .+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~-- 70 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDP-- 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-H--
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCH--
Confidence 3344555556689999999999632 23344677888888666 5677779999999998752 233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
..+.....++...++.+.|..+|++++..+ . .....-.+|..........|+++....+++++.+++
T Consensus 71 -~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l----~-~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 71 -DFWLEYLDFLIKLNDINNARALFERAISSL----P-KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHHCCTS----S-CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----C-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 344444577889999999999999998741 1 111134566667777778888888888888877765
No 282
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.14 E-value=0.11 Score=42.24 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 001110 203 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 252 (1155)
Q Consensus 203 ~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~ 252 (1155)
.++..||.+|..+|++++|+..|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46889999999999999999999999997 4666667777664
No 283
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.10 E-value=2.9 Score=51.69 Aligned_cols=164 Identities=15% Similarity=0.044 Sum_probs=90.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHH------
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAK---------LVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK------ 227 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel---------~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eK------ 227 (1155)
+-.+|...+..-+++-|.+.|.+.-++ .+.......|. -..+|.++..+|+|.+|..+|.+
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~----~iLlA~~~Ay~gKF~EAAklFk~~G~enR 663 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN----DLLLADVFAYQGKFHEAAKLFKRSGHENR 663 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch----HHHHHHHHHhhhhHHHHHHHHHHcCchhh
Confidence 444555666666777777776655322 11110011121 23578888889999999988865
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHH
Q 001110 228 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 307 (1155)
Q Consensus 228 ALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle 307 (1155)
|++++.. .-.+.++.-|...|.-++-..+.++--+..... +.|.. -|.++...|+.++|+.
T Consensus 664 AlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---kePka------AAEmLiSaGe~~KAi~ 724 (1081)
T KOG1538|consen 664 ALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---KEPKA------AAEMLISAGEHVKAIE 724 (1081)
T ss_pred HHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---CCcHH------HHHHhhcccchhhhhh
Confidence 4444322 123455666666666666555555443333222 22322 3667778888888876
Q ss_pred H------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 001110 308 Y------LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 353 (1155)
Q Consensus 308 ~------lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkk 353 (1155)
. .+-++++.+++. ......+..++..+..+..+..|.+.|++
T Consensus 725 i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 725 ICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred hhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 4 345566655441 11223445556666666666666655544
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.07 E-value=0.048 Score=42.20 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001110 224 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 265 (1155)
Q Consensus 224 ~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle 265 (1155)
+|++||++ +|+...+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37888887 68889999999999999999999963
No 285
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.00 E-value=0.13 Score=41.80 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV 210 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~ 210 (1155)
..++.+|..|...|++++|+++|+++++. +|....++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35788999999999999999999999987 5777778888875
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.72 E-value=0.13 Score=38.87 Aligned_cols=31 Identities=39% Similarity=0.573 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001110 202 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 232 (1155)
Q Consensus 202 A~al~nLG~vy~~~GdydeAle~~eKALei~ 232 (1155)
+.+|+.+|.+|..+|++++|+.+|++++++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4679999999999999999999999999985
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.69 E-value=0.061 Score=41.61 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHH
Q 001110 182 YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 222 (1155)
Q Consensus 182 ~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAl 222 (1155)
+|++|+++ +|....+|++||.+|...|++++|+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 36788877 7899999999999999999999986
No 288
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=93.56 E-value=0.95 Score=48.26 Aligned_cols=158 Identities=13% Similarity=0.129 Sum_probs=99.9
Q ss_pred cCCHHHHHH-HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 001110 173 KGKLEDAVT-YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY-----HTGDFNQATIYQQKALDINERELGLDHPDTMKS 246 (1155)
Q Consensus 173 ~GdyeeAle-~~~eALel~e~i~G~d~p~~A~al~nLG~vy~-----~~GdydeAle~~eKALei~er~lG~D~p~~a~a 246 (1155)
.|+|-++++ -|++|..++...+.. ...+...+.+|..++ ..+++..|++++..|... ....+
T Consensus 40 LgdYlEgi~knF~~A~kv~K~nCde--n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~a 107 (248)
T KOG4014|consen 40 LGDYLEGIQKNFQAAVKVFKKNCDE--NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQA 107 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc--cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHH
Confidence 345555543 566666666665433 233456666666554 245788899998888763 34567
Q ss_pred HHHHHHHHHHc-----CC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---------------------
Q 001110 247 YGDLAVFYYRL-----QH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG--------------------- 298 (1155)
Q Consensus 247 y~nLA~iy~~l-----G~--yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~--------------------- 298 (1155)
..++|.++..- ++ ..+|++|+.+|-++- ...+.++|..+|..
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~ 177 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAEL 177 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhh
Confidence 77888877643 23 678999998887641 13344444444443
Q ss_pred ---CCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHc
Q 001110 299 ---LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKL 362 (1155)
Q Consensus 299 ---lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~----lGdyeeAle~lkkALeI~kk~l 362 (1155)
..+.++|.++-.+|-++. ...+..|+.+.|.. -.+.++|..+-++|.++.+++-
T Consensus 178 ~~~~kDMdka~qfa~kACel~----------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACELD----------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhcC----------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 345667777766666542 34567778888763 2467889999999998877653
No 289
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.45 E-value=2.5 Score=50.10 Aligned_cols=155 Identities=12% Similarity=0.004 Sum_probs=97.3
Q ss_pred CChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCC---------------------CcHHHHHHHHHHHHHHH
Q 001110 281 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP---------------------DHIQTAASYHAIAIALS 339 (1155)
Q Consensus 281 dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~---------------------dhp~~a~a~~nLA~iy~ 339 (1155)
.+|..+.++..++.++..+|++..|.+++++||-.+++.+.. ++...-.+++.....+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 378889999999999999999999999999999877643211 11233455667777888
Q ss_pred HcCChhHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcC-CCcHHHHHHHHH
Q 001110 340 LMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKG-HLSVSDLLDYIN 417 (1155)
Q Consensus 340 ~lGdyeeAle~lkkALeI~kk~lG~d-h~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~-~~svaelL~~Lg 417 (1155)
++|-+..|+++.+-.+.+ ++. +|.......-...+..+.++.-..+........ ... ...+..+.+.++
T Consensus 115 ~RG~~rTAlE~~KlLlsL-----dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~----~~~~~~~lPn~a~S~a 185 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSL-----DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKC----YRNWLSLLPNFAFSIA 185 (360)
T ss_pred hcCcHHHHHHHHHHHHhc-----CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhh----hhhhhhhCccHHHHHH
Confidence 999999999988766543 554 554332222112222233332222211100000 000 001223456667
Q ss_pred HHHHHcCCh---------------HHHHHHHHHHHHHhhhhc
Q 001110 418 PSHDTKGRN---------------VSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 418 ~~y~~qGdy---------------eeAle~yeKALeL~~kl~ 444 (1155)
.++...++. ++|...+++|+..++.+.
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 777777777 899999999999888765
No 290
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=7 Score=46.69 Aligned_cols=162 Identities=15% Similarity=0.008 Sum_probs=105.4
Q ss_pred cCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 194 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 194 ~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
.|.+-..-....+..|.++....++.+|...+.++.-...+ +........++..++.++.+-+.--.++.+..+++..
T Consensus 265 ~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~ 342 (482)
T KOG4322|consen 265 FGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFK 342 (482)
T ss_pred hcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 34445555667777899999999999999988887665432 2222345566777788887777777888888887776
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH------HcCChhHH
Q 001110 274 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS------LMEAYPLS 347 (1155)
Q Consensus 274 ~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~------~lGdyeeA 347 (1155)
.... . .+...+.+-.++|..+..+|..+.|+..++.|+....-..|-+. .+.+++-.++++. ...+++.+
T Consensus 343 ~sey-~-ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~d--rara~fvfanC~lA~a~s~~~e~ld~~ 418 (482)
T KOG4322|consen 343 RSEY-S-LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDD--RARAIFVFANCTLAFALSCANESLDGF 418 (482)
T ss_pred HHHh-c-cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhh--cceeEEEEEeeeecchhhhhhhhHHhh
Confidence 6553 1 22334555678899999999999999999999987643322211 1222222222221 44566666
Q ss_pred HHHHHHHHHHHHHH
Q 001110 348 VQHEQTTLQILRAK 361 (1155)
Q Consensus 348 le~lkkALeI~kk~ 361 (1155)
..++++|-+++.+.
T Consensus 419 ~~~L~~A~~~f~kL 432 (482)
T KOG4322|consen 419 PRYLDLAQSIFYKL 432 (482)
T ss_pred HHHHHHHHHHHHHc
Confidence 66666666666554
No 291
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=3 Score=49.59 Aligned_cols=188 Identities=14% Similarity=-0.029 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
.+.++..+.++....++..|..++++++-.+.. +........++..++.++..-+.--.++-+.-.++....+. ..
T Consensus 273 vE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey-~l- 348 (482)
T KOG4322|consen 273 VENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY-SL- 348 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh-cc-
Confidence 455677788888888888888888877654432 23445667778888888887777777777777776655442 22
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH------HHCCChHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME------EGLGNVHVALRYLHKAL 313 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy------~~lG~~deAle~lekAL 313 (1155)
+...+..-.++|..+..+|..++|+..+..++....-..|-++ .+.+++-.+.++ ....+++.+.+++++|-
T Consensus 349 dyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~d--rara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~ 426 (482)
T KOG4322|consen 349 DYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDD--RARAIFVFANCTLAFALSCANESLDGFPRYLDLAQ 426 (482)
T ss_pred chhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhh--cceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHH
Confidence 2334556678899999999999999999999987654333221 122221111111 14566788899999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhH---HHHHHHHHH
Q 001110 314 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL---SVQHEQTTL 355 (1155)
Q Consensus 314 ei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyee---Ale~lkkAL 355 (1155)
.++.+. .-|..+..+++-+|..|-..|+.++ +.-.|++++
T Consensus 427 ~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~ 469 (482)
T KOG4322|consen 427 SIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAW 469 (482)
T ss_pred HHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 888776 5577788899999999999998764 333444444
No 292
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.14 E-value=0.096 Score=60.20 Aligned_cols=96 Identities=24% Similarity=0.145 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
..-..+...+..|.++.|++.|..|+.+ ++..+..|...|.+++.+++...|+.-|..|+.+ .+
T Consensus 116 e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~ 179 (377)
T KOG1308|consen 116 DKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NP 179 (377)
T ss_pred HHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Cc
Confidence 3444455667778888888888888876 6777778888888888888888888888888876 45
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
+.+.-|---|.....+|++++|..++..++++
T Consensus 180 Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 180 DSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred ccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 56666777777778888888888888887764
No 293
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=4.7 Score=46.81 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=86.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001110 206 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 285 (1155)
Q Consensus 206 ~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~ 285 (1155)
..|..+|+..++|.+|+.+....+.-.++. .|...+...+..=...|+.+.+..+|...+.-|......++- .|..
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc--pPql 207 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC--PPQL 207 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc--CHHH
Confidence 467889999999999999999988887775 555666777777788999999999999888888776665553 2333
Q ss_pred -HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 286 -AATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 286 -a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
+..-..-|.++..-.+|..|..||-+|++-+...
T Consensus 208 Qa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~ 242 (411)
T KOG1463|consen 208 QATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL 242 (411)
T ss_pred HHHHHHhccceeecccccchHHHHHHHHHcccccc
Confidence 3344455778888899999999999999877543
No 294
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=7.5 Score=48.34 Aligned_cols=106 Identities=13% Similarity=0.088 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...+++.|...+...+|..|+++|...+.....- ..+...+....+|+.||..+.+++.|.+++++|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 4567888889999999999999999998764321 234456889999999999999999999999998765
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 275 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e 275 (1155)
++........+-.+...-+.-++|+.+.........
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 233344444556666677888999998887776543
No 295
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=7.4 Score=47.71 Aligned_cols=183 Identities=13% Similarity=0.036 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+--++..++.+...|+.+.|+.+++.++....+ .....+++.+|.++..+.+|..|-.++....+...-
T Consensus 267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW----- 335 (546)
T KOG3783|consen 267 ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW----- 335 (546)
T ss_pred ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh-----
Confidence 444566677777888888899999988873222 234557888899998888999988888776665321
Q ss_pred ChhhHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHHHHHH----------------------------------
Q 001110 240 HPDTMKSYGDLA-VFYY--------RLQHTELALKYVKRALYLLHL---------------------------------- 276 (1155)
Q Consensus 240 ~p~~a~ay~nLA-~iy~--------~lG~yeeAle~yekALei~e~---------------------------------- 276 (1155)
..+ .|..++ .||+ ..|+-++|-.+++....+...
T Consensus 336 --S~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~ 412 (546)
T KOG3783|consen 336 --SHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPY 412 (546)
T ss_pred --hHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchH
Confidence 011 111111 1111 112222222222221111111
Q ss_pred ---------hc-----------------C-CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 001110 277 ---------TC-----------------G-PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 329 (1155)
Q Consensus 277 ---------l~-----------------G-~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~ 329 (1155)
.- . .+.-+..--+.-+|.++..+|+-..|..+|..+++-. .....++.....
T Consensus 413 ~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~Pf 491 (546)
T KOG3783|consen 413 YELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVPF 491 (546)
T ss_pred HHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhccccccccH
Confidence 00 0 0111122335567999999999999999999988653 233456667788
Q ss_pred HHHHHHHHHHHcCC-hhHHHHHHHHHHHH
Q 001110 330 SYHAIAIALSLMEA-YPLSVQHEQTTLQI 357 (1155)
Q Consensus 330 a~~nLA~iy~~lGd-yeeAle~lkkALeI 357 (1155)
+++.||.+|..+|. +.+|..++.+|-+.
T Consensus 492 A~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 492 ALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 99999999999998 99999999988765
No 296
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.86 E-value=15 Score=47.44 Aligned_cols=163 Identities=19% Similarity=0.155 Sum_probs=91.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 001110 166 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 245 (1155)
Q Consensus 166 lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ 245 (1155)
.|..++++|++++|..++ +++... +.. .-.++..+-.+|..++++++|..+|++++..+ |. -.
T Consensus 49 kaLsl~r~gk~~ea~~~L-e~~~~~----~~~---D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-ee 111 (932)
T KOG2053|consen 49 KALSLFRLGKGDEALKLL-EALYGL----KGT---DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EE 111 (932)
T ss_pred HHHHHHHhcCchhHHHHH-hhhccC----CCC---chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HH
Confidence 456778899999999544 344331 122 34567788899999999999999999998863 33 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHH--HHHHHHHHHHHhcCCC
Q 001110 246 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR--YLHKALKCNQRLLGPD 323 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle--~lekALei~ek~lG~d 323 (1155)
.+..+-.+|.+-+.|.+=.+ -|+++++. ++. .+. ..|.-+..+++.+...+.+.. ++--|-+...+.+...
T Consensus 112 ll~~lFmayvR~~~yk~qQk---aa~~LyK~-~pk-~~y--yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~ 184 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSYKKQQK---AALQLYKN-FPK-RAY--YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK 184 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHh-CCc-ccc--hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC
Confidence 55556667777777754222 23344332 222 222 234445555555555555444 1111111222222111
Q ss_pred -cHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 001110 324 -HIQTAASYHAIAIALSLMEAYPLSVQHEQ 352 (1155)
Q Consensus 324 -hp~~a~a~~nLA~iy~~lGdyeeAle~lk 352 (1155)
......=....-.++..+|++++|.+.+.
T Consensus 185 gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 185 GKIESEAEIILYLLILELQGKYQEALEFLA 214 (932)
T ss_pred CccchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11111112223345667899999998874
No 297
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.84 E-value=0.14 Score=61.10 Aligned_cols=95 Identities=21% Similarity=0.201 Sum_probs=83.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001110 206 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 285 (1155)
Q Consensus 206 ~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~ 285 (1155)
-+-|.-++.-++|+.|+.+|-|||++ +++.+..+.+-+..+.+.++|..|+.-+.+|+++ +|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34456667788999999999999997 6778888899999999999999999999999985 5888
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 286 AATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 286 a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+.+|+.-|.+...++.+.+|+..|++...+.
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999998877765
No 298
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=22 Score=42.42 Aligned_cols=142 Identities=17% Similarity=0.127 Sum_probs=102.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 001110 169 TALDKGKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 247 (1155)
Q Consensus 169 ~yl~~GdyeeAle~~~eALel~e~i-~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay 247 (1155)
.++.+.+|.+|..+-...+.-.... .-..+-..+.+|+.+..+|...|+...-..++..-+... .++.|....+...
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLi 212 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLI 212 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHH
Confidence 3455688888888777665432111 000123457788999999999999777666666666553 3455666677778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 248 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 248 ~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+.|=..|...+.|+.|..+..++..-- ...+...++.++.+|.+..-+++|..|.+++.+|+...
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 888889999999999988776654210 11234678889999999999999999999999999876
No 299
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=92.77 E-value=5.9 Score=47.78 Aligned_cols=177 Identities=14% Similarity=-0.061 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHH
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF-------NQATIYQQKALDINE 233 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gdy-------deAle~~eKALei~e 233 (1155)
..+-.+|..++..|+|+-|...|+.+.+-+..- ..-...+.++...|.+++..+.. +....+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 345667889999999999999999888765321 12234566677777777766643 367778888888887
Q ss_pred HhcC---CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHH--HHCCChHHH
Q 001110 234 RELG---LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN---TAATYINVAMME--EGLGNVHVA 305 (1155)
Q Consensus 234 r~lG---~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~---~a~a~~nLA~iy--~~lG~~deA 305 (1155)
+... ........+....+.++...+.+.+|...+-+.....- ..+.. .+-.+-.+|.+| ......
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~~--- 359 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNRP--- 359 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCCC---
Confidence 6311 11224556777788888899999888777766655421 01111 344444555555 111000
Q ss_pred HHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 001110 306 LRYLHKALKCNQRLLGPD-HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 359 (1155)
Q Consensus 306 le~lekALei~ek~lG~d-hp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~k 359 (1155)
..+.. ....+.-+..-|.-|...|+...|+.+|.+|+.++.
T Consensus 360 -------------~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 360 -------------SPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred -------------CccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 00000 112223334456778899999999999999999875
No 300
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.34 E-value=4.5 Score=50.10 Aligned_cols=51 Identities=10% Similarity=-0.059 Sum_probs=33.2
Q ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 294 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 294 ~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
.++...++|++|..+.++-= .....+|+-.|+.+....+|++|.+.|.+|=
T Consensus 781 qlHve~~~W~eAFalAe~hP-----------e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHP-----------EFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hheeecccchHhHhhhhhCc-----------cccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 34455667776655443211 1233567778888889999999988887654
No 301
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.25 E-value=41 Score=42.59 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKA 186 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eA 186 (1155)
.-.++.++|..+.....+++|.+||.+.
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666677777777777777777654
No 302
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.18 E-value=13 Score=43.16 Aligned_cols=153 Identities=15% Similarity=0.042 Sum_probs=90.0
Q ss_pred CChhhHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001110 197 YHRMTAGAYSLLAVVLYHTGD-----FNQATIYQQKALDINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKR 269 (1155)
Q Consensus 197 d~p~~A~al~nLG~vy~~~Gd-----ydeAle~~eKALei~er~lG--~D~p~~a~ay~nLA~iy~~lG~yeeAle~yek 269 (1155)
.+|....+|..+....-..-. -.......++-|.++++.+. .++..+...|..+ +.+..+-++..+-+++
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~---~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEE---GEKVWDSEKLAKKWEE 90 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHhCCHHHHHHHHHH
Confidence 366666777666655443322 22223333344444443332 2333344444433 3455566666667777
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHHH
Q 001110 270 ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD----------HIQTAASYHAIAIALS 339 (1155)
Q Consensus 270 ALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~d----------hp~~a~a~~nLA~iy~ 339 (1155)
++.. .++.+.+-..|...-........++.....|.++|.......... ......++..++..+.
T Consensus 91 ~l~~-----~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 91 LLFK-----NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHH-----CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 6663 223334433443333333445578899999999998876654332 2345677788888889
Q ss_pred HcCChhHHHHHHHHHHHH
Q 001110 340 LMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 340 ~lGdyeeAle~lkkALeI 357 (1155)
+.|..+.|+..++-.+++
T Consensus 166 ~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEF 183 (321)
T ss_pred HCCchHHHHHHHHHHHHH
Confidence 999999999998877765
No 303
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=5.7 Score=47.09 Aligned_cols=140 Identities=13% Similarity=0.065 Sum_probs=91.5
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 001110 296 EEGLGNVHVALRYLHKALKCNQRLLG--PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAA 373 (1155)
Q Consensus 296 y~~lG~~deAle~lekALei~ek~lG--~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al 373 (1155)
+..++++.+|..+-...+.-.. ... .-+...+.+|+.+..+|...|+...-..++..-+... .++.+........
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLi 212 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLI 212 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHH
Confidence 4455777777776665543211 100 1123356778899999999999777666665544442 3454444444444
Q ss_pred HHHH--HHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 374 AWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 374 ~~La--~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
.+|. ++..+.++++..+......+... ....++..++++|.+..-+++|..|.+++-+|+...+.
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~----snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAA----SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCcccc----ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 5544 55666677776665544444322 22378999999999999999999999999999987765
No 304
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=91.84 E-value=6.2 Score=53.84 Aligned_cols=227 Identities=14% Similarity=0.023 Sum_probs=137.4
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC--------------------
Q 001110 200 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH-------------------- 259 (1155)
Q Consensus 200 ~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~-------------------- 259 (1155)
..++..-.+|.+|+..|.+.+|+.+|..|+.+++.. .|+...+.++-.++.+..-++.
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 345667789999999999999999999999998874 5666666666555543322110
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhc---CCCChh--HHHHHHHHHHHHHH
Q 001110 260 ------------------------------------TELALKYVKRALYLLHLTC---GPSHPN--TAATYINVAMMEEG 298 (1155)
Q Consensus 260 ------------------------------------yeeAle~yekALei~e~l~---G~dhp~--~a~a~~nLA~iy~~ 298 (1155)
.+.=.+.+++++.++.+.. ....|. ..++...++.++..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 1111234445555444432 111232 35667777777777
Q ss_pred CC--------------------ChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 299 LG--------------------NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 299 lG--------------------~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
.. .-.++..++.+|+.+....+ ...+....|..+|.+|..+|-..++.-+++.++..+
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 77 77889999999998765432 345667889999999999999999888888887665
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchh-hh-h---c--CCCcHHHHHHHHHHHHHHcCChHHHHH
Q 001110 359 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS-IA-S---K--GHLSVSDLLDYINPSHDTKGRNVSTLK 431 (1155)
Q Consensus 359 kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~-~a-~---~--~~~svaelL~~Lg~~y~~qGdyeeAle 431 (1155)
-..+...+......+..+...+. ........ .. . . -..-..+++..+-.+.++.+|+..+++
T Consensus 476 ~~~l~~~~~s~~~lL~~~~~~Yg-----------i~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~ 544 (1185)
T PF08626_consen 476 VPGLIHWHQSYRSLLEELCKGYG-----------ISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLR 544 (1185)
T ss_pred ccccCCcchHHHHHHHHHhccCc-----------ccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 43331112111111111111000 00000000 00 0 0 011134566667777799999999999
Q ss_pred HHHHHHHHhh
Q 001110 432 RKTYVAKVKG 441 (1155)
Q Consensus 432 ~yeKALeL~~ 441 (1155)
+.-..|+-..
T Consensus 545 ~~~~LL~~~~ 554 (1185)
T PF08626_consen 545 FSSLLLRTYS 554 (1185)
T ss_pred HHHHHHHHHh
Confidence 8876666543
No 305
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=91.79 E-value=3.7 Score=43.95 Aligned_cols=141 Identities=18% Similarity=0.161 Sum_probs=89.8
Q ss_pred hhhhcCChHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhc-----CC--
Q 001110 150 HKQAACSSADGRQLLESSKTAL-----DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----GD-- 217 (1155)
Q Consensus 150 ~K~~~~~s~~A~~Ll~lG~~yl-----~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~-----Gd-- 217 (1155)
.|..-.....+...|..|..++ ..+++..|++++..+.+. ....+..++|.+++.- ++
T Consensus 58 ~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~~~r~~dpd 127 (248)
T KOG4014|consen 58 FKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGEKDRKADPD 127 (248)
T ss_pred HHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCcCCccCCCC
Confidence 3333333444556666665554 345778888888887653 3445777888887643 23
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHHH
Q 001110 218 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL------------------------QHTELALKYVKRALYL 273 (1155)
Q Consensus 218 ydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~l------------------------G~yeeAle~yekALei 273 (1155)
..+|++++.+|.++ ....+.++|...|+.- .+.++|+++-.+|-++
T Consensus 128 ~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel 197 (248)
T KOG4014|consen 128 SEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL 197 (248)
T ss_pred cHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc
Confidence 67888888888764 1233445555544432 4556666666666553
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHC----CChHHHHHHHHHHHHHHHHhc
Q 001110 274 LHLTCGPSHPNTAATYINVAMMEEGL----GNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 274 ~e~l~G~dhp~~a~a~~nLA~iy~~l----G~~deAle~lekALei~ek~l 320 (1155)
++ ..+..|+..+|..- ++-++|..|-.+|+++.+...
T Consensus 198 -------~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 198 -------DI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred -------CC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 33 45667888887642 457899999999999987653
No 306
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.71 E-value=4.7 Score=48.02 Aligned_cols=117 Identities=16% Similarity=0.049 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh----cC-CCChhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHH
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE----LG-LDHPDTMKSYGDLAVFYYRLQHT---ELALKYVKRALY 272 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~----lG-~D~p~~a~ay~nLA~iy~~lG~y---eeAle~yekALe 272 (1155)
++..++..|.+.+....|++|+.++..|=+.+-.. +. .| +.+..-..+-+||+.+.+. .+|..-+.+|-.
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VD--NyallnLDIVWCYfrLknitcL~DAe~RL~ra~k 239 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVD--NYALLNLDIVWCYFRLKNITCLPDAEVRLVRARK 239 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc--chhhhhcchhheehhhcccccCChHHHHHHHHHH
Confidence 34456667778888888888888877776654332 10 11 2333445678899988764 567666666666
Q ss_pred HHHHhcCCC-----------ChhH---HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 273 LLHLTCGPS-----------HPNT---AATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 273 i~e~l~G~d-----------hp~~---a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
-+...+|.+ .|.. ...+.-.|.+.+.+|+-++|.++|+.|...+.++
T Consensus 240 gf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 240 GFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 666655544 4443 3445667999999999999999999998877655
No 307
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=91.62 E-value=5.2 Score=47.71 Aligned_cols=142 Identities=16% Similarity=0.050 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL--AVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nL--G~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
.+...+..+..++..++|..|.+++...+.. +- .. .. ...+..| |..++..-++.+|.+++++.+......
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~-~~-~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l- 202 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRR---LP-GR-EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL- 202 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC-ch-hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-
Confidence 4566777888899999999999999998764 21 11 11 3445554 555678899999999999877642110
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
......+..+..+ -+++..+.............-.......++..|.--...|+|+.|...+-+++++.
T Consensus 203 ----~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 203 ----NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred ----HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0001111112211 12222222222221110000022334444455666667899999999999999987
Q ss_pred HH
Q 001110 317 QR 318 (1155)
Q Consensus 317 ek 318 (1155)
-+
T Consensus 272 ~Q 273 (379)
T PF09670_consen 272 AQ 273 (379)
T ss_pred HH
Confidence 44
No 308
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.55 E-value=27 Score=39.09 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---C-------hhhHHHHHHHHHHHHHcC--------------CH
Q 001110 205 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLD---H-------PDTMKSYGDLAVFYYRLQ--------------HT 260 (1155)
Q Consensus 205 l~nLG~vy~~~GdydeAle~~eKALei~er~lG~D---~-------p~~a~ay~nLA~iy~~lG--------------~y 260 (1155)
.+.+..+|+..|+..+|+..+++=+..+....+.. . .-.+.-|..+|.++.... -|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 34567888999999999999999888887776541 1 112333445566555433 12
Q ss_pred HHHHHHHHHHHHHHHHhcC-CC-------------------ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 261 ELALKYVKRALYLLHLTCG-PS-------------------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 261 eeAle~yekALei~e~l~G-~d-------------------hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
..|-.+...-...++.+.. ++ .+.....+..+........+-...++++.+|++.+...
T Consensus 93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~- 171 (247)
T PF11817_consen 93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY- 171 (247)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh-
Confidence 3343343333333333320 00 00001111111111112234456789999999988765
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 359 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~k 359 (1155)
........+...+|..|...|+|++|+.+|+.+...++
T Consensus 172 -~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr 209 (247)
T PF11817_consen 172 -GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYR 209 (247)
T ss_pred -ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 23455667788999999999999999999999866654
No 309
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.32 E-value=14 Score=46.19 Aligned_cols=107 Identities=8% Similarity=0.001 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCC
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 323 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~d 323 (1155)
-..+.+-|.-+++..+|..|+++|...+...-. ...+...+....+|+.+|..+.+.|.|.+++++|-+.-+
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~------ 425 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR------ 425 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc------
Confidence 345667788889999999999999999875422 112345588889999999999999999999999987542
Q ss_pred cHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 324 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 324 hp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
....+...+-.+....|.-++|+....+...++..
T Consensus 426 --~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 426 --QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred --ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 22333444556666778889999988777666543
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.28 E-value=2 Score=56.35 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=30.6
Q ss_pred HHCCChHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 297 EGLGNVHVALRYLHKALKCNQRLL--GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 297 ~~lG~~deAle~lekALei~ek~l--G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
.+.|.|.+|+.+|.--.+..+..+ -.+|.....-+..-|.+|...|+.++|+..|+.+.
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhc
Confidence 455667777766653333322211 01122222223445666777777777777766543
No 311
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.22 E-value=31 Score=39.11 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=84.7
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 001110 172 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 251 (1155)
Q Consensus 172 ~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA 251 (1155)
.+++|++|++++.+...+ +.+.|++.-|.++..-.++.+++. . .+.......+|+
T Consensus 2 ~~kky~eAidLL~~Ga~~----------------------ll~~~Q~~sg~DL~~lliev~~~~--~-~~~~~~~~~rl~ 56 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALI----------------------LLKHGQYGSGADLALLLIEVYEKS--E-DPVDEESIARLI 56 (260)
T ss_dssp HTT-HHHHHHHHHHHHHH----------------------HHHTT-HHHHHHHHHHHHHHHHHT--T----SHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH----------------------HHHCCCcchHHHHHHHHHHHHHHc--C-CCCCHHHHHHHH
Confidence 456778777776655443 344555666666655556665552 1 112222345666
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHH-----HHH---HHH--hc
Q 001110 252 VFYYRLQHTE-LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA-----LKC---NQR--LL 320 (1155)
Q Consensus 252 ~iy~~lG~ye-eAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekA-----Lei---~ek--~l 320 (1155)
.++.....-+ +-.++..+|+... + .+.........+..+|..|.+.|++.+|..+|-.+ ... ... ..
T Consensus 57 ~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~ 134 (260)
T PF04190_consen 57 ELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK 134 (260)
T ss_dssp HHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 6666665433 3445667777655 2 33333345677888999999999999999988421 111 111 11
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
|..+ .........-.-|...++...|...+..-.+.+
T Consensus 135 ~~~~-e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~ 171 (260)
T PF04190_consen 135 GYPS-EADLFIARAVLQYLCLGNLRDANELFDTFTSKL 171 (260)
T ss_dssp TSS---HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred cCCc-chhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2211 122222233345567799999988777666543
No 312
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.02 E-value=1.7 Score=40.32 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
.++...+.|..++.+.+.++|+..++++|+... +.+....++..|..+|...|+|.+++.+..+=+++++..
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466778888888999999999999999998743 345677888899999999999999999999888887764
No 313
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.02 E-value=1 Score=52.37 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 225 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~ 225 (1155)
.....++..|+.++..++|+.|...|.+|..++..++|..|..+..+++.+|..++..++++.++-.+
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34677889999999999999999999999999999999999999999999999999998887766443
No 314
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.01 E-value=5.3 Score=55.97 Aligned_cols=175 Identities=21% Similarity=0.099 Sum_probs=109.1
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001110 154 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 233 (1155)
Q Consensus 154 ~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e 233 (1155)
......++.+++.|++....|+++.|..++-.|.+. ....++...|..++.+|+-..|+..+++.+..+.
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 556778999999999999999999999999888765 2456888999999999999999999999997653
Q ss_pred HhcCC---------CChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-----HHHHH
Q 001110 234 RELGL---------DHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINV-----AMMEE 297 (1155)
Q Consensus 234 r~lG~---------D~p~~a~ay~nLA~iy~~lG~y--eeAle~yekALei~e~l~G~dhp~~a~a~~nL-----A~iy~ 297 (1155)
.-+-. +......+...++......+++ ++-+++|+.+.++..+.. ..|-..+..|-.+ +..+.
T Consensus 1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe-~~hy~l~~yy~kll~~~~~~~~E 1812 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE-DKHYHLGKYYDKLLEDYKSNKME 1812 (2382)
T ss_pred ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc-CceeeHHHHHHHHhhhhhccccc
Confidence 32111 1111123455566666666665 456788888888865422 1233333222111 12222
Q ss_pred HCCChHH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 001110 298 GLGNVHV---ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 339 (1155)
Q Consensus 298 ~lG~~de---Ale~lekALei~ek~lG~dhp~~a~a~~nLA~iy~ 339 (1155)
..|++.. |+.+|.+|+..-.+..-..-|.....|..+|..+.
T Consensus 1813 ~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~ 1857 (2382)
T KOG0890|consen 1813 KSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHIS 1857 (2382)
T ss_pred ccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhc
Confidence 3455555 55566666654322222223444455555554444
No 315
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.99 E-value=7.2 Score=47.75 Aligned_cols=175 Identities=19% Similarity=0.086 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhc
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG---DFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G---dydeAle~~eKALei~er~l 236 (1155)
+..+...+.++...|+..+|-.+-.++..+++.............|+.++..--..- .++....++++++.+.
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~---- 361 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE---- 361 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh----
Confidence 344445566666666665555554444444433211111122222232222211111 1334444555555442
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHCCChHHHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-EEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~i-y~~lG~~deAle~lekALei 315 (1155)
+.+...+|.++-.+-.+..-...|...|.+|.+.-. +..| +|..-|.+ |...++..-|.+.|+-.|+.
T Consensus 362 ---~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r---~~hh-----VfVa~A~mEy~cskD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 362 ---DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR---TRHH-----VFVAAALMEYYCSKDKETAFRIFELGLKK 430 (656)
T ss_pred ---ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC---Ccch-----hhHHHHHHHHHhcCChhHHHHHHHHHHHh
Confidence 333344555555555566667777778877765321 1222 22223333 66788899999999887776
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 316 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 316 ~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+ .+.+.....| ...+..+++-..|..+|++++.-
T Consensus 431 f-----~d~p~yv~~Y---ldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 431 F-----GDSPEYVLKY---LDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred c-----CCChHHHHHH---HHHHHHhCcchhHHHHHHHHHhc
Confidence 5 4445444443 45566778888888888887753
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.79 E-value=4.7 Score=43.87 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 001110 178 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL 257 (1155)
Q Consensus 178 eAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~l 257 (1155)
.+++-|.++++++..+-...++..- . .+++.-+...+..-.+.+.+.+..+|.+. ..+..+
T Consensus 59 ~~le~Y~kCielAa~Iq~i~~~e~k-~-----------~R~~a~~~s~~~l~~L~~~tk~S~dP~ll-------Yy~Wsr 119 (203)
T PF11207_consen 59 EALEKYSKCIELAAQIQHIKQKERK-T-----------DRFRALLHSYQELERLQEETKNSQDPYLL-------YYHWSR 119 (203)
T ss_pred HHHHHHHHHHHHHhcCeeechHhHH-H-----------HHHHHHHHHHHHHHHHHHHHccCCCccHH-------HHHhhc
Confidence 3566688888887665322222211 0 11111111222222333444455666432 223333
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 001110 258 QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 337 (1155)
Q Consensus 258 G~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~i 337 (1155)
-.-++|++-|.++ -|......+...+.||..|. ..+.++|+.+|.++|++.. .++.....++..||.+
T Consensus 120 ~~d~~A~~~fL~~-------E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~ 187 (203)
T PF11207_consen 120 FGDQEALRRFLQL-------EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASI 187 (203)
T ss_pred cCcHHHHHHHHHH-------cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHH
Confidence 3335666555443 23444566788888888887 5678999999999999873 3323345778889999
Q ss_pred HHHcCChhHHHHH
Q 001110 338 LSLMEAYPLSVQH 350 (1155)
Q Consensus 338 y~~lGdyeeAle~ 350 (1155)
|..+|+++.|.-+
T Consensus 188 ~~~~~~~e~AYiw 200 (203)
T PF11207_consen 188 YQKLKNYEQAYIW 200 (203)
T ss_pred HHHhcchhhhhhh
Confidence 9999999988643
No 317
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.66 E-value=0.13 Score=59.30 Aligned_cols=89 Identities=24% Similarity=0.307 Sum_probs=78.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001110 211 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 290 (1155)
Q Consensus 211 vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~ 290 (1155)
-.+..|.+++|+++|..||.+ .|..+..|...|.++..+++...|++-|..|+.+ +++.+.-|-
T Consensus 123 eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk 186 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK 186 (377)
T ss_pred HHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence 344578899999999999987 5778899999999999999999999999999986 567788888
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 291 NVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 291 nLA~iy~~lG~~deAle~lekALei 315 (1155)
.-|.....+|+|++|..+|..|+++
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhc
Confidence 8899999999999999999988765
No 318
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.52 E-value=5.9 Score=50.09 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=14.3
Q ss_pred cCCCCCccccccccCCCcccccccccc
Q 001110 515 EGDDGWQPVQRLRSAGSYGRRLKQRRA 541 (1155)
Q Consensus 515 ~~~~g~~~~~~~~~~~~~~~~~~~r~~ 541 (1155)
+.++|-.+.++.-+++.++..+||-|.
T Consensus 1118 tk~~~~sk~sr~ttkN~rr~erkRarg 1144 (1243)
T COG5290 1118 TKDECMSKTSRSTTKNMRRGERKRARG 1144 (1243)
T ss_pred hcccccchhhhhhhhhcccchhhhhcC
Confidence 367777666555555544433444443
No 319
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=8.3 Score=44.25 Aligned_cols=134 Identities=18% Similarity=0.120 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001110 206 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 285 (1155)
Q Consensus 206 ~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~ 285 (1155)
..-+.-....|++.+|...|..++... +....+...|+.+|...|+.+.|...+...=.- ..-..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-------~~~~~ 202 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-------AQDKA 202 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-------chhhH
Confidence 344556678899999999999999873 344677888999999999999998877652110 00011
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCC
Q 001110 286 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 365 (1155)
Q Consensus 286 a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~d 365 (1155)
...+...-.++.+.....+...+ ++.+. ..|......+.||..|...|+.++|++++- .++++-.|..
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~l-~~~~a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll---~~l~~d~~~~ 270 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQDL-QRRLA--------ADPDDVEAALALADQLHLVGRNEAALEHLL---ALLRRDRGFE 270 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHH-HHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHhccccc
Confidence 11111101122222222221111 11111 124445667889999999999999999874 4444444443
Q ss_pred C
Q 001110 366 D 366 (1155)
Q Consensus 366 h 366 (1155)
+
T Consensus 271 d 271 (304)
T COG3118 271 D 271 (304)
T ss_pred C
Confidence 3
No 320
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.27 E-value=40 Score=44.34 Aligned_cols=168 Identities=15% Similarity=0.092 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER-- 234 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er-- 234 (1155)
......+-++|...++.|...+|++-|-+|- +| ..|...-.+....|.|++-+.|+.-|..-.+.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyikad----------Dp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~ 1167 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKAD----------DP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY 1167 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhcC----------Cc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc
Confidence 3344567788999999999999999887652 22 24555556666777777777776665443221
Q ss_pred ---------------------hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001110 235 ---------------------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 293 (1155)
Q Consensus 235 ---------------------~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA 293 (1155)
+.|.++.+ ....|.-++..+.|+.|.-+|.. ..-|..||
T Consensus 1168 id~eLi~AyAkt~rl~elE~fi~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La 1227 (1666)
T KOG0985|consen 1168 IDSELIFAYAKTNRLTELEEFIAGPNVAN----IQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLA 1227 (1666)
T ss_pred chHHHHHHHHHhchHHHHHHHhcCCCchh----HHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHH
Confidence 11222111 12344444555555554433332 22345567
Q ss_pred HHHHHCCChHHHHHHHHHHHHH--HHH---------------hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 294 MMEEGLGNVHVALRYLHKALKC--NQR---------------LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 294 ~iy~~lG~~deAle~lekALei--~ek---------------~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
..+..+|+|+.|....++|-.+ +++ ..|-+-.-.+.-+-.|-..|...|-|++-+.+++.++-
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 7777778888777777665432 111 11111111223344566677777777777776666554
Q ss_pred H
Q 001110 357 I 357 (1155)
Q Consensus 357 I 357 (1155)
+
T Consensus 1308 L 1308 (1666)
T KOG0985|consen 1308 L 1308 (1666)
T ss_pred h
Confidence 3
No 321
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.84 E-value=19 Score=41.96 Aligned_cols=128 Identities=12% Similarity=0.012 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 001110 176 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 255 (1155)
Q Consensus 176 yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~ 255 (1155)
.+.-+.+|++||+. +|.....+..+-.++....+-++....+++++... ...+.+-..|.+.-...+
T Consensus 47 ~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-----~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 47 AERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-----PGSPELWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHh
Confidence 34556667777665 33434444444444455667777777788887752 234445555555444445
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 256 RLQHTELALKYVKRALYLLHLTCGPS----------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 256 ~lG~yeeAle~yekALei~e~l~G~d----------hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
..-.++.....|.++|..+....... ......++..+...+.+.|..+.|+..++-.+++.
T Consensus 114 ~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 55678899999999999877654332 23456778888999999999999999999999876
No 322
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.69 E-value=2.8 Score=39.01 Aligned_cols=70 Identities=16% Similarity=0.020 Sum_probs=55.3
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcC
Q 001110 289 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 363 (1155)
Q Consensus 289 ~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG 363 (1155)
...-|.-++...+.++|+..+++||+.. .+.+....++-.|..+|...|+|.+++.+..+=+++.+++-.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3444555667888899999999999876 344566777888999999999999999998888887766533
No 323
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.56 E-value=2.2 Score=42.16 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=61.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 166 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 166 lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~----GdydeAle~~eKALei~er~lG~D~p 241 (1155)
++..++.+|++-+|+++.+..+... | .+...+..+..-|.+++.+ .+.+-=..|+.-+++-+.+.... +|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h----~-~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH----G-EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc----c-CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 4667889999999999999988763 2 2233335566667777544 34444444555555555443222 45
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALY 272 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALe 272 (1155)
..+..++.||.-+-....|+++..-.+++|.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5566677777655544455555555555554
No 324
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=89.37 E-value=42 Score=37.81 Aligned_cols=189 Identities=15% Similarity=0.064 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~-~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
.+..+|++.-+.++|++.+.+.++++++... ......=.+.|..+|-. .|....+...+.. ++..+...|.
T Consensus 3 ~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~-----~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~-- 74 (244)
T smart00101 3 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDS-----EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN-- 74 (244)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-----ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCc--
Confidence 3556788888899999999999988764210 01223344555555532 3555555554443 2222111111
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--h-hHHHHHHHHHHHHHHC-----CC-----hHHHHH
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH--P-NTAATYINVAMMEEGL-----GN-----VHVALR 307 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dh--p-~~a~a~~nLA~iy~~l-----G~-----~deAle 307 (1155)
.. ...+..-|. ..=-++=..++...+.+....+-+.. + ..+..+-..|..|..+ |+ .++|..
T Consensus 75 ~~----~~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 75 ED----HVASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred hH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 11 011111111 11123344567777777665543321 1 1222222334444332 21 458999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHHcC
Q 001110 308 YLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLG 363 (1155)
Q Consensus 308 ~lekALei~ek~lG~dhp~~a~a~~nLA~iy~-~lGdyeeAle~lkkALeI~kk~lG 363 (1155)
.|++|+++....+.+.||.......|.+..|+ -+++.++|....++|++-....+.
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld 206 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELD 206 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887788889988888888887766 469999999888888876654433
No 325
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=25 Score=46.65 Aligned_cols=197 Identities=16% Similarity=0.059 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH------HHcCCH----HHHHHHHHHHHHH
Q 001110 204 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY------YRLQHT----ELALKYVKRALYL 273 (1155)
Q Consensus 204 al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy------~~lG~y----eeAle~yekALei 273 (1155)
..+.+|.+|...|+..+|+.+|.+|..-. |.+. ++..+.... ...|+. ..|+.||.+++.+
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~----ge~~-----aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rl 992 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGF----GEGN-----ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRL 992 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhcc----ccHH-----HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHH
Confidence 45678999999999999999999997742 1111 222221110 023332 3367777777776
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 001110 274 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 353 (1155)
Q Consensus 274 ~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkk 353 (1155)
++.. +..+.+.++..+|++-. +.+.+..+..+..+=.-+.++|.+-+|...+-+
T Consensus 993 le~h----------------------n~~E~vcQlA~~AIe~l----~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~ 1046 (1480)
T KOG4521|consen 993 LEEH----------------------NHAEEVCQLAVKAIENL----PDDNPSVALISTTVFNHHLDLGHWFQAYKAILR 1046 (1480)
T ss_pred HHHh----------------------ccHHHHHHHHHHHHHhC----CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc
Confidence 6542 22344444445555432 455666666666666666677776666543211
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHh--cCCCC------chhhhhcCCCcHHHHHHHHHHHHHHcCC
Q 001110 354 TLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN--GTRKP------DASIASKGHLSVSDLLDYINPSHDTKGR 425 (1155)
Q Consensus 354 ALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~--~~~~~------~~~~a~~~~~svaelL~~Lg~~y~~qGd 425 (1155)
.++.....+++..|.-...+..+...-... ..... ...............|..|-..+..+++
T Consensus 1047 ---------npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN 1117 (1480)
T KOG4521|consen 1047 ---------NPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHN 1117 (1480)
T ss_pred ---------CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcc
Confidence 233333344444333221111111100000 00000 0000001111223345566666788999
Q ss_pred hHHH-HHHHHHHHHHhhhhc
Q 001110 426 NVST-LKRKTYVAKVKGNFY 444 (1155)
Q Consensus 426 yeeA-le~yeKALeL~~kl~ 444 (1155)
|.+| --.|+.++.+.....
T Consensus 1118 ~RkaatvMYEyamrl~se~~ 1137 (1480)
T KOG4521|consen 1118 FRKAATVMYEYAMRLESETC 1137 (1480)
T ss_pred hhHHHHHHHHHHHHhccccc
Confidence 9984 566888888766543
No 326
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.48 E-value=4.7 Score=47.80 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH---HH
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN---QR 318 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~---ek 318 (1155)
.+-.++..+|..|...|+++.|+++|-++.+.+.. ...++..+.|+-.+-..+|+|..-..+-.+|.... ..
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 35678899999999999999999999998887644 34567888888888899999998888888877652 10
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 354 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkA 354 (1155)
. ...-+....++ -|.+...+++|..|..++-.+
T Consensus 223 ~-~q~v~~kl~C~--agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 223 L-AQEVPAKLKCA--AGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred H-HHhcCcchHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 0 01111223444 444555566899888887654
No 327
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.42 E-value=50 Score=37.43 Aligned_cols=148 Identities=13% Similarity=0.029 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN-QATIYQQKALDINERELGL 238 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gdyd-eAle~~eKALei~er~lG~ 238 (1155)
.+.++.-+..+++.|++..|.++..-.++.+.+... +.......+|+.++...+.-+ +-..+..+|+... + .+.
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~---~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~ 84 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSED---PVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-K-FGS 84 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCC
Confidence 455666778899999999999999888888877422 222334467777777665433 4566888888887 3 344
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhcCCCChhHHHHHHHHH-HHHHHCCChHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRA-----------LYLLHLTCGPSHPNTAATYINVA-MMEEGLGNVHVAL 306 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekA-----------Lei~e~l~G~dhp~~a~a~~nLA-~iy~~lG~~deAl 306 (1155)
........+..+|..|++.+++.+|..+|-.+ +..+... + .+.....+...| ..|...++...|.
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~--~~~e~dlfi~RaVL~yL~l~n~~~A~ 161 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-G--YPSEADLFIARAVLQYLCLGNLRDAN 161 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-T--SS--HHHHHHHHHHHHHHTTBHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-c--CCcchhHHHHHHHHHHHHhcCHHHHH
Confidence 55566788899999999999999999888421 1112221 1 222234444334 3477789999998
Q ss_pred HHHHHHHHH
Q 001110 307 RYLHKALKC 315 (1155)
Q Consensus 307 e~lekALei 315 (1155)
..+..-++.
T Consensus 162 ~~~~~f~~~ 170 (260)
T PF04190_consen 162 ELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766655
No 328
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.34 E-value=7.2 Score=46.58 Aligned_cols=118 Identities=15% Similarity=0.060 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHH
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP--Y-HRMTAGAYSLLAVVLYHTGD---FNQATIYQQKALDINE 233 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~--d-~p~~A~al~nLG~vy~~~Gd---ydeAle~~eKALei~e 233 (1155)
+-.+++.|+.++....|++|+.++..|-+.+...... + --..+..-..+-+||+.+.+ +..|..-+..|-.-++
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 5567888999999999999999988887765432110 0 00112222234456666554 3455555555554444
Q ss_pred HhcC-----------CCChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 234 RELG-----------LDHPDT---MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 234 r~lG-----------~D~p~~---a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
+.+| ...|.. ...+..-|.+.+.+|+-++|.++++.|...+...
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 4444 344543 3456677999999999999999999998877654
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.11 E-value=0.7 Score=34.21 Aligned_cols=32 Identities=13% Similarity=-0.016 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 411 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 411 elL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
++++.+|.+|..+|++++|+.+|++.++.++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 46789999999999999999999999987654
No 330
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.84 E-value=71 Score=39.62 Aligned_cols=83 Identities=14% Similarity=-0.094 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Q 001110 181 TYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 260 (1155)
Q Consensus 181 e~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~y 260 (1155)
+.+.+++...... .|..+..+..-|.++...|+.+.|+.++..++....+ .-...+++.+|+++..+.+|
T Consensus 250 ~~~~~~Ll~~~~~----~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~ 319 (546)
T KOG3783|consen 250 EECEKALKKYRKR----YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQY 319 (546)
T ss_pred HHHHHHhHHHHHh----CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433 4555666777888888899988899999998883222 12346788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 001110 261 ELALKYVKRALYL 273 (1155)
Q Consensus 261 eeAle~yekALei 273 (1155)
..|..++.....+
T Consensus 320 ~~aad~~~~L~de 332 (546)
T KOG3783|consen 320 SRAADSFDLLRDE 332 (546)
T ss_pred HHHhhHHHHHHhh
Confidence 9999988876664
No 331
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.69 E-value=0.64 Score=56.62 Aligned_cols=109 Identities=14% Similarity=0.201 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001110 248 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 327 (1155)
Q Consensus 248 ~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~ 327 (1155)
+.-|..+..+|+...|..++++|+-.. .......+.+||.++..-|-.-+|-.++.++|.+.- . .
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-----s---e 675 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-----S---E 675 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-----c---C
Confidence 334555566899999999999998642 112234567899999999988999999999999861 1 2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001110 328 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 328 a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~L 376 (1155)
...++.+|.+|..+.+.+.|+++|++|++. .+..+.....+..+
T Consensus 676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~-----~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 676 PLTFLSLGNAYLALKNISGALEAFRQALKL-----TTKCPECENSLKLI 719 (886)
T ss_pred chHHHhcchhHHHHhhhHHHHHHHHHHHhc-----CCCChhhHHHHHHH
Confidence 245678899999999999999999999975 45555554444433
No 332
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.01 E-value=6.5 Score=46.80 Aligned_cols=108 Identities=14% Similarity=0.073 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC------hhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH------RMT----AGAYSLLAVVLYHTGDFNQATIYQQKALD 230 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~------p~~----A~al~nLG~vy~~~GdydeAle~~eKALe 230 (1155)
+..+.-|..++.+++|..|.--|..||+++.+..-... .+. ......|..||+.+++.+.|+.+..+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 34555677788899999999999999999876421111 111 12345788999999999999999999988
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 231 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 231 i~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
+ .|....-+..-|.|+..+.+|.+|.+-+.-|..++-.
T Consensus 257 l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl 294 (569)
T PF15015_consen 257 L--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWL 294 (569)
T ss_pred c--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 4556666777899999999999999888877776654
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.47 E-value=1 Score=33.32 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 246 SYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
+++++|.+|..+|++++|+++|++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6789999999999999999999998874
No 334
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=86.45 E-value=15 Score=42.76 Aligned_cols=129 Identities=15% Similarity=0.078 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 001110 177 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 256 (1155)
Q Consensus 177 eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~ 256 (1155)
++-++-+.++++-.++.+|. .+...++.+.|..|.+.||-+.|++.+++..+-.-.. +...+...+...||.+|..
T Consensus 81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhcc
Confidence 34455566677766666553 4677899999999999999999999888766532221 2334666777788888876
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 257 LQHTELALKYVKRALYLLHLTCGPSHP--NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 257 lG~yeeAle~yekALei~e~l~G~dhp--~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
..-..+ ..++|-.+.++ |.+.. ....+| -|.......+|.+|-.+|-.++..+
T Consensus 157 ~~lV~~---~iekak~liE~--GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 157 HDLVTE---SIEKAKSLIEE--GGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHH---HHHHHHHHHHh--CCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHcccc
Confidence 544333 34444445444 33322 233444 4666666778888888888877655
No 335
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.94 E-value=19 Score=41.23 Aligned_cols=133 Identities=11% Similarity=0.010 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 001110 176 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 255 (1155)
Q Consensus 176 yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~ 255 (1155)
-++-++-+.++++-.+...| ..+.+.++.++|..|.+.+|.+.+.+.+.+.+.-.-.+ .-..+...+...||.+|.
T Consensus 91 neeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y~ 166 (412)
T COG5187 91 NEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIYG 166 (412)
T ss_pred hHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhhc
Confidence 35556667777766655432 34678899999999999999999999988877654332 223456667778888887
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 256 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 256 ~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.+.-.++.++...-.+ ++ |.+....-..-...|.......+|.+|-.++-.++..+.
T Consensus 167 d~~vV~e~lE~~~~~i---Ek--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 167 DRKVVEESLEVADDII---EK--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred cHHHHHHHHHHHHHHH---Hh--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 6655555554444433 33 333222222223346666677788888888887776553
No 336
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=85.90 E-value=1e+02 Score=38.38 Aligned_cols=127 Identities=18% Similarity=0.066 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC---hHHHHHHHHHHHH
Q 001110 245 KSYGDLAVFYYRLQHTE-------LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN---VHVALRYLHKALK 314 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~ye-------eAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~---~deAle~lekALe 314 (1155)
..+...+.++.+.|+.. +|..+|+++++.... .....|+.++..-...-+ ++..-.++++++.
T Consensus 287 ~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~-------~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~ 359 (656)
T KOG1914|consen 287 MYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK-------ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLK 359 (656)
T ss_pred HHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHh
Confidence 33445666677777654 455555555553221 123344444443333222 5555666666665
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHH
Q 001110 315 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAA 390 (1155)
Q Consensus 315 i~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi 390 (1155)
+. +.+...+|.++-..-.+..-...|...|.+|-+. ..+..| +.-+.+.+.+.-.++...+-.+
T Consensus 360 ~~-------~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~---~r~~hh--VfVa~A~mEy~cskD~~~AfrI 423 (656)
T KOG1914|consen 360 IE-------DIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED---KRTRHH--VFVAAALMEYYCSKDKETAFRI 423 (656)
T ss_pred hh-------ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc---cCCcch--hhHHHHHHHHHhcCChhHHHHH
Confidence 54 2223333444444444555566677777766543 112222 2223344555555554444433
No 337
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.63 E-value=1.1 Score=30.99 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
.++.++|.+|..++++++|..+|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999875
No 338
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=85.63 E-value=5.4 Score=39.46 Aligned_cols=100 Identities=11% Similarity=0.165 Sum_probs=59.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 208 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL----QHTELALKYVKRALYLLHLTCGPSHP 283 (1155)
Q Consensus 208 LG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~l----G~yeeAle~yekALei~e~l~G~dhp 283 (1155)
+|.-++..|++-+|+++.++.+.... . +......+..-|.+++.+ .+.+-=..|+.-+++.+.+... -.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~----~-~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG----E-DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc----C-CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 46778899999999999999887632 2 222234555566666554 3444444556666665554322 256
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 001110 284 NTAATYINVAMMEEGLGNVHVALRYLHKAL 313 (1155)
Q Consensus 284 ~~a~a~~nLA~iy~~lG~~deAle~lekAL 313 (1155)
..+..++.||.-+....-|+++..-.+++|
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 667777777766544433444444444443
No 339
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.45 E-value=1.7 Score=34.88 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 287 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 287 ~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
.+|..||.+-...++|++|+.-|++||++.++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46888999999999999999999999999987754
No 340
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=85.40 E-value=25 Score=40.92 Aligned_cols=107 Identities=20% Similarity=0.065 Sum_probs=72.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
..+..+.-+++-+......+-.+-++...+||++ +++.+.+|..||.--. --..+|..++++||+..+..
T Consensus 180 d~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~ 249 (556)
T KOG3807|consen 180 DTDFLRPEDEIMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETI 249 (556)
T ss_pred cccccChHHHHHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHH
Confidence 3333444455555566677777888888888887 6888889888886432 34678888888888765533
Q ss_pred cC-----------------CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001110 236 LG-----------------LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 272 (1155)
Q Consensus 236 lG-----------------~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALe 272 (1155)
+. .|..-...+...||.|..++|+..+|.+.++....
T Consensus 250 yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 250 YRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 21 11122334456788899999999999888876544
No 341
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.39 E-value=9.6 Score=38.46 Aligned_cols=74 Identities=23% Similarity=0.222 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh---h----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 205 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP---D----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 205 l~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p---~----~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
+.++|...+..+++-.|+-+|++|+.+.++....+.. + ......|||.++..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999886322111 1 13456799999999999999999999888766554
Q ss_pred c
Q 001110 278 C 278 (1155)
Q Consensus 278 ~ 278 (1155)
.
T Consensus 84 i 84 (140)
T PF10952_consen 84 I 84 (140)
T ss_pred c
Confidence 3
No 342
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.25 E-value=1.7 Score=34.90 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCC
Q 001110 329 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 364 (1155)
Q Consensus 329 ~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~ 364 (1155)
.+|..||.+-...++|++|+.-|++|+++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 567889999999999999999999999999887654
No 343
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=85.07 E-value=1.2 Score=53.20 Aligned_cols=137 Identities=22% Similarity=0.259 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHh----cCCCChhhHHHHH------HHHHHHHHcCCHHHHHHHHHH
Q 001110 201 TAGAYSLLAVVLYHT-GDFNQATIYQQKALDINERE----LGLDHPDTMKSYG------DLAVFYYRLQHTELALKYVKR 269 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~-GdydeAle~~eKALei~er~----lG~D~p~~a~ay~------nLA~iy~~lG~yeeAle~yek 269 (1155)
...++-.||..|... .|.-.|+.++++|++....- ..........+|. +...+..-.++.+ ++-.+
T Consensus 244 riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~Rmq 320 (615)
T KOG0508|consen 244 RIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQ 320 (615)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHH
Confidence 356677777776543 46778999999999876541 0011111111121 1111111122222 23356
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 001110 270 ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 340 (1155)
Q Consensus 270 ALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~ 340 (1155)
+|-+.++++|+.|+++.......|-+|...|+++.-++++.-||++.++.+.+-.+.++..+...+.++..
T Consensus 321 aLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 321 ALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 78888899999999988777778999999999999999999999999999988899999999888887764
No 344
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=84.96 E-value=5.8 Score=47.69 Aligned_cols=136 Identities=21% Similarity=0.105 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhc---CCCChhhHHHHHHHHH-------HHHhcCCHHHHHHHHHHH
Q 001110 160 GRQLLESSKTALD-KGKLEDAVTYGTKALAKLVAVC---GPYHRMTAGAYSLLAV-------VLYHTGDFNQATIYQQKA 228 (1155)
Q Consensus 160 A~~Ll~lG~~yl~-~GdyeeAle~~~eALel~e~i~---G~d~p~~A~al~nLG~-------vy~~~GdydeAle~~eKA 228 (1155)
.+++--+|..|.. +.+.-.|+.++.++++....-. -+.++.....-+..+. +-...+|.+ .+-.+|
T Consensus 245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~Rmqa 321 (615)
T KOG0508|consen 245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQA 321 (615)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHHH
Confidence 3344445555543 3467789999999998865510 0111111111111111 111112222 234578
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001110 229 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 298 (1155)
Q Consensus 229 Lei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~ 298 (1155)
|-+.++++|..|+++.......|-+|..+|+++..++++.-||++.++.+.+-.|.++..+...|.++..
T Consensus 322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 8889999999999988777778999999999999999999999999998888889888888887776643
No 345
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.73 E-value=1.2e+02 Score=38.13 Aligned_cols=172 Identities=14% Similarity=-0.024 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
-..+..........|+++...-+|++++--+. ..-..|...+......|+.+-|-..++.+.++..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~------ 362 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIHV------ 362 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC------
Confidence 33444444556678999999999999886643 2235677778877888999999999999988853
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
+....+...-|.+....|+++.|...|++...- .|....+-..-+.+..++|+.+.+-. +...+....
T Consensus 363 -k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~-- 430 (577)
T KOG1258|consen 363 -KKTPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYSSIY-- 430 (577)
T ss_pred -CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhc--
Confidence 334455556677888899999999999987653 25555555556677788899888875 333332221
Q ss_pred cCCCcH-HHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHH
Q 001110 320 LGPDHI-QTAASYHAIAIALS-LMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 320 lG~dhp-~~a~a~~nLA~iy~-~lGdyeeAle~lkkALeI 357 (1155)
-|..+. .....+...+.... -.++-+.|...+.+++++
T Consensus 431 ~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 431 EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 123332 23445566666554 457888899888888876
No 346
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.35 E-value=5.1 Score=47.49 Aligned_cols=114 Identities=20% Similarity=0.153 Sum_probs=81.2
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001110 150 HKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 229 (1155)
Q Consensus 150 ~K~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKAL 229 (1155)
+|.-..+...-+.+..+|..|..-|+++.|++.|-++-+.+... ...+..+.++-.+-..+|+|..-..+..+|.
T Consensus 140 yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 140 YKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 34444445556778889999999999999999999987776442 4567788888899999999999998888887
Q ss_pred HHH---HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001110 230 DIN---ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 271 (1155)
Q Consensus 230 ei~---er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekAL 271 (1155)
... +.. ...-+ ..+.+.-|.+.+.+++|..|.++|-.+.
T Consensus 215 st~~~~~~~-~q~v~--~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 215 STPDANENL-AQEVP--AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hCchhhhhH-HHhcC--cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 652 110 00111 2334445555566669999998887654
No 347
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.32 E-value=1.3 Score=30.62 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 411 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 411 elL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
.++..+|.++..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4578899999999999999999999988654
No 348
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.29 E-value=10 Score=39.92 Aligned_cols=92 Identities=22% Similarity=0.166 Sum_probs=71.5
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001110 154 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 233 (1155)
Q Consensus 154 ~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e 233 (1155)
.+.......+++.....+..++.+++..++. |+..+ .|.....-..-|.++...|++.+|+.+++....
T Consensus 4 ~C~~~iv~gLie~~~~al~~~~~~D~e~lL~-ALrvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--- 72 (160)
T PF09613_consen 4 QCSDEIVGGLIEVLSVALRLGDPDDAEALLD-ALRVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--- 72 (160)
T ss_pred cCcHHHHHHHHHHHHHHHccCChHHHHHHHH-HHHHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc---
Confidence 3455567778888888899999999888775 44443 577778888899999999999999999998643
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHH
Q 001110 234 RELGLDHPDTMKSYGDLAVFYYRLQHTE 261 (1155)
Q Consensus 234 r~lG~D~p~~a~ay~nLA~iy~~lG~ye 261 (1155)
+.+....+--.++.|++.+|+.+
T Consensus 73 -----~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 -----RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -----cCCCChHHHHHHHHHHHHcCChH
Confidence 34555666667899998888764
No 349
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=83.87 E-value=48 Score=38.12 Aligned_cols=133 Identities=11% Similarity=0.097 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001110 218 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 297 (1155)
Q Consensus 218 ydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~ 297 (1155)
-++-++-+.++++-.+...| ......+..|+|..|...++.+.+.+++.+.+.-.-.. | -..+..-+-..||.+|.
T Consensus 91 neeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st-g-~KiDv~l~kiRlg~~y~ 166 (412)
T COG5187 91 NEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST-G-LKIDVFLCKIRLGLIYG 166 (412)
T ss_pred hHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc-c-cchhhHHHHHHHHHhhc
Confidence 34455556666665554322 24567899999999999999999999999887754432 2 23344555667777776
Q ss_pred HCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 001110 298 GLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 359 (1155)
Q Consensus 298 ~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~k 359 (1155)
.+.-.++.++ .+-.+.++ |.+-...-......|...+...+|.+|-.++-.++..|.
T Consensus 167 d~~vV~e~lE---~~~~~iEk--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 167 DRKVVEESLE---VADDIIEK--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred cHHHHHHHHH---HHHHHHHh--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 6544444443 33344433 233222223333457777777888888888877776554
No 350
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.40 E-value=29 Score=43.15 Aligned_cols=176 Identities=14% Similarity=0.027 Sum_probs=99.9
Q ss_pred cCCHHHHHHHHHHHHHHHHH----hcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCC---------
Q 001110 257 LQHTELALKYVKRALYLLHL----TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD--------- 323 (1155)
Q Consensus 257 lG~yeeAle~yekALei~e~----l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~d--------- 323 (1155)
...|++|...|.-|.....- ..-..+|..+..+..+|.++..+|+.+-|..+.+++|-.+.+.+-+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34577888888777665321 00124788899999999999999999999999999998777654221
Q ss_pred ----cH---HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhHHHHHHHHhcC-
Q 001110 324 ----HI---QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGT- 394 (1155)
Q Consensus 324 ----hp---~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~d-h~~t~~al~~La~l~qk~~e~AeAi~~~~- 394 (1155)
++ ....+++..-.-+.+.|-+..|.++++-.+.+ ++. +|..+..+.-+..+..+.|+.-..+.+..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-----dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-----DPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 11222333333445778888888887755543 444 66544333333333333333322222111
Q ss_pred CCCchhhhhcCCCcHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhhh
Q 001110 395 RKPDASIASKGHLSVSDLLDYINPSHDTKGR---NVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 395 ~~~~~~~a~~~~~svaelL~~Lg~~y~~qGd---yeeAle~yeKALeL~~k 442 (1155)
..........-.-++ .|+..|..+.. -+.|+..+.+|+.+++.
T Consensus 406 ~~n~l~~~PN~~yS~-----AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 406 NMNKLSQLPNFGYSL-----ALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhccHhhcCCchHHH-----HHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 111111100100122 23444444444 56799999999999883
No 351
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=83.13 E-value=5.5 Score=50.22 Aligned_cols=102 Identities=21% Similarity=0.324 Sum_probs=47.4
Q ss_pred ccccceeeccCCCCCCCcccccccCcccccCCCCcccCCCCCCCCCCCCCCCC------CCCCCCCCCccCCccCCCCCC
Q 001110 858 RASAVAINMTLPPGPGAVTAVAPWPVNMTLHPRPATVLPTVNPMCSSPHQPYP------SPPSTPNMMQPLPFMYPPYTQ 931 (1155)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 931 (1155)
.++|+.=+-+.||-|++.|+++--|- -=|+-.+||.-|++|.| +|||+|-+|-||-=+-|=|-.
T Consensus 546 ppPPlpggag~PPPPpplPg~aG~PP----------pPppppg~~gppPPPpp~g~~Gg~ppPP~~gm~pmaPvlP~gLk 615 (1102)
T KOG1924|consen 546 PPPPLPGGAGPPPPPPPLPGIAGGPP----------PPPPPPGGGGPPPPPPPGGFLGGPPPPPPPGMFPMAPVLPFGLK 615 (1102)
T ss_pred CCCCCCCCCCCCccCCCCCcccCCCC----------ccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCcccccccCCCCCC
Confidence 34555555566777777776654331 11233345544444431 244444455553333333332
Q ss_pred CCCCCCCCCCcccCCCCCCCccccccCCCCCCCccCCCCCCCCccccc
Q 001110 932 PQGVPTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLPGYHPMEF 979 (1155)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1155)
|--++--.-||- .|.|-- -+--|.-=-.+|-+|.-=-|
T Consensus 616 pKK~~k~e~~Mr-------r~nW~k---I~p~d~s~~cFWvkv~Edk~ 653 (1102)
T KOG1924|consen 616 PKKVYKPEVPMR-------RFNWSK---IVPRDLSENCFWVKVNEDKL 653 (1102)
T ss_pred ccccCCCCCccc-------cCCccc---cCccccCccceeeecchhhc
Confidence 333443333332 355842 11112222478999975444
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.80 E-value=8.5 Score=47.44 Aligned_cols=98 Identities=19% Similarity=0.155 Sum_probs=71.7
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 204 AYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 204 al~nLG~vy~-~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dh 282 (1155)
.+++++..|+ .+|+..+|+.++..|+.+... |.. -.++..||.++.+.|...+|--.+..|+.- -
T Consensus 214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~-----h~k-di~lLSlaTiL~RaG~sadA~iILhAA~~d--------A 279 (886)
T KOG4507|consen 214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSR-----HNK-DIALLSLATVLHRAGFSADAAVILHAALDD--------A 279 (886)
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCc-----ccc-cchhhhHHHHHHHcccccchhheeehhccC--------C
Confidence 4455665554 579999999999999987532 222 246778999999999999988777666543 2
Q ss_pred hhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 283 PNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 283 p~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
+....-++.+|.+|..++.|.....+|..|++.
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 333344777888888888888888888877654
No 353
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.24 E-value=29 Score=37.31 Aligned_cols=133 Identities=13% Similarity=0.023 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~ 242 (1155)
.|..+..+...++-++|+..|...-+. -+| . +-..+....|.+....|+...|+.+|..+-... ..|.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lekt---g~g-~--YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~ 128 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKT---GYG-S--YPVLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQ 128 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhc---CCC-c--chHHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcc
Confidence 344444556678889999887764432 111 2 234467788999999999999999998765421 1222
Q ss_pred hH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001110 243 TM--KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 314 (1155)
Q Consensus 243 ~a--~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALe 314 (1155)
.. .+...-|.++...|-|++-..- .+.+.++.+|....+.--||..-++.|++.+|..+|.+...
T Consensus 129 ~~rd~ARlraa~lLvD~gsy~dV~sr-------vepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 129 IGRDLARLRAAYLLVDNGSYDDVSSR-------VEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHH-------hhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 22 2344557778888888765433 33345677888888889999999999999999999987655
No 354
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.90 E-value=10 Score=49.85 Aligned_cols=14 Identities=57% Similarity=0.935 Sum_probs=9.3
Q ss_pred ccccCCCCCCCccc
Q 001110 843 LSASAVPFNPSPAV 856 (1155)
Q Consensus 843 ~~~~~~~~~~~~~~ 856 (1155)
.+|...|.||||++
T Consensus 777 t~~~g~p~~p~p~p 790 (1049)
T KOG0307|consen 777 TSANGFPYNPSPAP 790 (1049)
T ss_pred ccccCCCCCCCCCC
Confidence 34555688888873
No 355
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.60 E-value=7.3 Score=42.44 Aligned_cols=79 Identities=20% Similarity=0.165 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001110 218 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 297 (1155)
Q Consensus 218 ydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~ 297 (1155)
-++|...|.++ -|....+.+.....||.+|. ..+.++|+.+|.++|++.. +++.-...++..||.+|.
T Consensus 122 d~~A~~~fL~~-------E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 122 DQEALRRFLQL-------EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQ 189 (203)
T ss_pred cHHHHHHHHHH-------cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHH
Confidence 35566555433 23444566788888998887 6788999999999999853 333334677889999999
Q ss_pred HCCChHHHHHH
Q 001110 298 GLGNVHVALRY 308 (1155)
Q Consensus 298 ~lG~~deAle~ 308 (1155)
.+|+++.|.-+
T Consensus 190 ~~~~~e~AYiw 200 (203)
T PF11207_consen 190 KLKNYEQAYIW 200 (203)
T ss_pred Hhcchhhhhhh
Confidence 99999998543
No 356
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.41 E-value=25 Score=45.27 Aligned_cols=49 Identities=18% Similarity=0.068 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001110 183 GTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 232 (1155)
Q Consensus 183 ~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~ 232 (1155)
|.-|+.+++.. +.+....+.++...|.-++..|++++|...|-+++...
T Consensus 350 y~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 33444444332 23344567888999999999999999999999988763
No 357
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=80.97 E-value=47 Score=39.79 Aligned_cols=138 Identities=17% Similarity=0.057 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 205 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL--AVFYYRLQHTELALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 205 l~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nL--A~iy~~lG~yeeAle~yekALei~e~l~G~dh 282 (1155)
....+.-.+..++|..|...+...+.- + ... .. ...+..| |..+...-++.+|.++++..+......
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~~-~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l----- 202 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR---L-PGR-EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL----- 202 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cch-hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-----
Confidence 344556667889999999999887763 1 111 11 3455555 445556778899999999877642210
Q ss_pred hhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 283 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 283 p~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
......+..+..+. ++...+...+.........-.......++.-|.=-...|+|+.|+..+-++++++-+
T Consensus 203 ~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 NQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred HhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 00011111111111 222222222222211100001222233333344444689999999999889887654
No 358
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.84 E-value=7.5 Score=33.45 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001110 329 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 329 ~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~L 376 (1155)
.+++.||..+.++|+|++|..+.+.++++ .|++.........+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHHHH
Confidence 36788999999999999999999999987 57777665554443
No 359
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=80.73 E-value=9.6 Score=50.39 Aligned_cols=105 Identities=16% Similarity=0.108 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 001110 219 NQATIYQQKALDINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 296 (1155)
Q Consensus 219 deAle~~eKALei~er~lG--~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy 296 (1155)
=-|...|.+|+..++++.. +....-..+.+.+|..+..+-.-..--+.|.+||..++.+.+. +...--|...|.+|
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 562 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKALVY 562 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHHHHH
Confidence 3444555555555544311 1122334566777777766543333336788888888776542 33334577788999
Q ss_pred HHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 001110 297 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 330 (1155)
Q Consensus 297 ~~lG~~deAle~lekALei~ek~lG~dhp~~a~a 330 (1155)
+++|+|++-+++|.-|++.+ +.||.....
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 591 (932)
T PRK13184 563 QRLGEYNEEIKSLLLALKRY-----SQHPEISRL 591 (932)
T ss_pred HHhhhHHHHHHHHHHHHHhc-----CCCCccHHH
Confidence 99999999999999999887 566665544
No 360
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=80.38 E-value=5.3 Score=50.40 Aligned_cols=6 Identities=33% Similarity=0.606 Sum_probs=2.8
Q ss_pred CCCCCC
Q 001110 582 HGSSAD 587 (1155)
Q Consensus 582 ~~~~~~ 587 (1155)
|.++.|
T Consensus 438 Hr~~~D 443 (1102)
T KOG1924|consen 438 HRTGMD 443 (1102)
T ss_pred hcCCCC
Confidence 444444
No 361
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=80.20 E-value=22 Score=42.53 Aligned_cols=103 Identities=20% Similarity=0.163 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-----h-h----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 207 LLAVVLYHTGDFNQATIYQQKALDINERELGLDH-----P-D----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 207 nLG~vy~~~GdydeAle~~eKALei~er~lG~D~-----p-~----~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
.=|..++++++|..|.--|+.||+++.+...... . + ...+...|..||.++++.+.|+....+++.+
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l--- 257 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL--- 257 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc---
Confidence 3355667788899998889999888776322111 1 1 1234567999999999999999999998875
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 277 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 277 l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
+|....-+...|.++..+.+|.+|.+-+--|.-++.
T Consensus 258 -----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymyw 293 (569)
T PF15015_consen 258 -----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYW 293 (569)
T ss_pred -----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667788899999999999888777666653
No 362
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.19 E-value=91 Score=44.79 Aligned_cols=111 Identities=14% Similarity=0.029 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
....+.+|..+|++.+..|.++.|..+.-+|.+. ....++...|..+...|+-..|+.++++.+.....-
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 5678999999999999999999999999888764 246788999999999999999999999999765332
Q ss_pred cC---------CCChhHHHHHHHHHHHHHHCCChH--HHHHHHHHHHHHHHH
Q 001110 278 CG---------PSHPNTAATYINVAMMEEGLGNVH--VALRYLHKALKCNQR 318 (1155)
Q Consensus 278 ~G---------~dhp~~a~a~~nLA~iy~~lG~~d--eAle~lekALei~ek 318 (1155)
+. .+......+...++......++++ +-+.+|++|.++..+
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 11 111112234555566666666643 567888888888743
No 363
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=80.11 E-value=1.1e+02 Score=36.17 Aligned_cols=95 Identities=11% Similarity=0.152 Sum_probs=66.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001110 253 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 332 (1155)
Q Consensus 253 iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~ 332 (1155)
+....++.++|++++++..+-....-.+ .........+|.++...|+..++.+.+...-.......+-.. .+-..|+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~-~Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTS-NVHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCCh-hhhhhHH
Confidence 3445678999999999998876653211 245667778899999999999999999988887766644332 2334445
Q ss_pred HHH-HHHHHcCChhHHHHH
Q 001110 333 AIA-IALSLMEAYPLSVQH 350 (1155)
Q Consensus 333 nLA-~iy~~lGdyeeAle~ 350 (1155)
.++ .+|...|+|..+..+
T Consensus 161 ~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 555 455567888765444
No 364
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.86 E-value=13 Score=44.74 Aligned_cols=72 Identities=19% Similarity=0.155 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 205 YSLLAVVLYHTGDFNQATIYQQKALDINE-RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 205 l~nLG~vy~~~GdydeAle~~eKALei~e-r~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
+..|.+++..+|||..|++.++.. ++.+ ..+.........+++.+|.+|+.+++|.+|++.|...|-...+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678889999999999876432 2211 11222234456788999999999999999999999998776553
No 365
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.74 E-value=55 Score=35.28 Aligned_cols=148 Identities=11% Similarity=-0.015 Sum_probs=98.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 001110 167 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 246 (1155)
Q Consensus 167 G~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~a 246 (1155)
|..|++.+.-+.+-+.|..||++.. .+..++|+.-|... ++..-...| ..+
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~-----------------------~~k~d~Alaaf~~l----ektg~g~Yp--vLA 96 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQ-----------------------ENKTDDALAAFTDL----EKTGYGSYP--VLA 96 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHH-----------------------cCCchHHHHHHHHH----HhcCCCcch--HHH
Confidence 4456666666777777777777643 24455666554432 222111122 446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCc
Q 001110 247 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA--ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 324 (1155)
Q Consensus 247 y~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a--~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dh 324 (1155)
.+..|.+....|+...|..+|..+-.. ...|... .+...-|.++...|-|++-.... +.+-+...
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n 163 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGN 163 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHHHHHHhccccHHHHHHHh-------hhccCCCC
Confidence 678899999999999999999986542 1233332 23445577788888877654433 34446777
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 325 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 325 p~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
+....+.-.||..-++.|+|.+|..+|++...
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888889999999999999999999986553
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=79.45 E-value=53 Score=40.17 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=21.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHH
Q 001110 168 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY 224 (1155)
Q Consensus 168 ~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~ 224 (1155)
+.....++++++..+.... ++...+ | ..-...++..+..+|-.+.|+.+
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i-----~--~~~~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNI-----P--KDQGQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG---------HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccC-----C--hhHHHHHHHHHHHCCCHHHHHhh
Confidence 3556789999977766311 111111 1 12245566666777777777654
No 367
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.31 E-value=96 Score=38.83 Aligned_cols=175 Identities=14% Similarity=0.037 Sum_probs=100.9
Q ss_pred cCCHHHHHHHHHHHHHHHHH----hcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---------
Q 001110 173 KGKLEDAVTYGTKALAKLVA----VCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD--------- 239 (1155)
Q Consensus 173 ~GdyeeAle~~~eALel~e~----i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D--------- 239 (1155)
...|++|...|.-|.....- ++-..+|+....+..+|.++..+||.+.|..+.+++|-.+++.+...
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45577888877777665321 11135688889999999999999999999999999998888764321
Q ss_pred ----Chhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 001110 240 ----HPDT---MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHK 311 (1155)
Q Consensus 240 ----~p~~---a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d-hp~~a~a~~nLA~iy~~lG~~deAle~lek 311 (1155)
++.. ..+++..-..+...|-+..|+++++-.+.+ .+. +|.- +++.+-....+..+|+=-+++++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-----dp~eDPl~--~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-----DPSEDPLG--ILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCcCCchh--HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1221 122222233445678888888888877664 233 4432 223333333444455544555444
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHH
Q 001110 312 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEA---YPLSVQHEQTTLQIL 358 (1155)
Q Consensus 312 ALei~ek~lG~dhp~~a~a~~nLA~iy~~lGd---yeeAle~lkkALeI~ 358 (1155)
.-... ++ ..-|..+.. ..||..|..... .+.|+..+.+|+..+
T Consensus 404 ~e~~n-~l--~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 404 PENMN-KL--SQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHhhc-cH--hhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 32211 11 001111111 234555554443 566777788877653
No 368
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.12 E-value=1.2e+02 Score=35.11 Aligned_cols=135 Identities=16% Similarity=0.079 Sum_probs=81.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 001110 171 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 250 (1155)
Q Consensus 171 l~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nL 250 (1155)
...|+|=+|.+.|+..+-..... ..+.......+.-+.+++..++..-|..+.-..++.+++. +..+.....-++
T Consensus 17 ~~~~d~Yeahqm~RTl~fR~~~~--K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka---~~ad~~~~~anl 91 (312)
T KOG3024|consen 17 IELGDYYEAHQMYRTLVFRYTRQ--KAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKA---EVADSLLKVANL 91 (312)
T ss_pred cccccHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH---HhhHhHHHHHHH
Confidence 34567777777776665444333 2344445555666677777777777777766666666552 111112223466
Q ss_pred HHHHHHcCCHHHHHH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 001110 251 AVFYYRLQHTELALK-YVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 311 (1155)
Q Consensus 251 A~iy~~lG~yeeAle-~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lek 311 (1155)
+.+....+.-+..+. +.+++++. ...+|.........+..||..+...+++.+|..+|-.
T Consensus 92 ~~ll~e~~~~eper~~~v~raikW-S~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 92 AELLGEADPSEPERKTFVRRAIKW-SKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHHhhcCCCccHHHHHHHHHHHH-HhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 666666665555554 44555554 4433333233345677889999999999999999864
No 369
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=77.13 E-value=1.6e+02 Score=39.71 Aligned_cols=100 Identities=13% Similarity=-0.018 Sum_probs=52.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH------HHHhcCCCcHH
Q 001110 255 YRLQHTELALKYVKRALYLLHLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC------NQRLLGPDHIQ 326 (1155)
Q Consensus 255 ~~lG~yeeAle~yekALei~e~l~G--~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei------~ek~lG~dhp~ 326 (1155)
.+.+.|.+|+.+|.--.+..+..+. -+|-....-+..-|.+|...|+.++|+..|+.+... ..+.... ...
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~-~de 997 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEG-KDE 997 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCC-HHH
Confidence 3556677777666433332222110 011111122345577888889999998888765543 3222111 112
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
....-..|+.-+..++++-+|-+.+++.+
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 22222456666777787777777665544
No 370
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.12 E-value=53 Score=38.26 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
...+.+...||.+|...++|..|-..+. ++..-.-....+.......+..+|.+|.+.++..+|..|..++--+....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-
Confidence 3567778899999999999988776542 11110000001223346678899999999999999999999886554432
Q ss_pred CCCChh-HHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 001110 279 GPSHPN-TAATYINVAMMEEGLGNVHVALRYLHKAL 313 (1155)
Q Consensus 279 G~dhp~-~a~a~~nLA~iy~~lG~~deAle~lekAL 313 (1155)
.++. ....-...|.++-..++|-+|-..|.+..
T Consensus 178 --~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 178 --SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2232 23333455777878888877766665433
No 371
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=76.37 E-value=23 Score=35.89 Aligned_cols=73 Identities=18% Similarity=0.086 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh---h----HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 247 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP---N----TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 247 y~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp---~----~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
+..+|...+..+++-.|+-+|++|+.+.+++...+.. + ......|||..+..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999998886322211 1 23456899999999999999999999887765443
No 372
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=76.27 E-value=37 Score=37.73 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 001110 179 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 256 (1155)
Q Consensus 179 Ale~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~ 256 (1155)
|+.+|.+|+.+ .|..+..|+.||.++...|+.-.|+-+|-+++.. ..|- ..+..||..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 78899999998 5888999999999999999999999999999854 2333 5677888888777
No 373
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=75.93 E-value=37 Score=42.20 Aligned_cols=96 Identities=15% Similarity=-0.022 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001110 218 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL--QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 295 (1155)
Q Consensus 218 ydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~l--G~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~i 295 (1155)
-.+-..+.++.|.++-.. ..-.....++.+||.+..-. ..-..++++|.+|+...+..++..| ..-|..+|-.
T Consensus 253 ~~e~~~lqq~lLw~lyd~--ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~ 327 (618)
T PF05053_consen 253 SVELAQLQQDLLWLLYDM--GHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGY 327 (618)
T ss_dssp EHHHHHHHHHHHHHHHHT--TTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhc--CchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhH
Confidence 344455566666654432 22234567888888876643 2346789999999999999887554 3456778999
Q ss_pred HHHCCChHHHHHHHHHHHHHHHH
Q 001110 296 EEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 296 y~~lG~~deAle~lekALei~ek 318 (1155)
|++.++|.+|+.++-+|-+..++
T Consensus 328 ~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 328 YYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888776543
No 374
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.87 E-value=5 Score=34.52 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 411 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 411 elL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
+.+++++..+.+.|+|++|+.+.+.+|++.+.+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 5788999999999999999999999999988765
No 375
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.85 E-value=2.4e+02 Score=36.11 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=14.7
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 001110 167 SKTALDKGKLEDAVTYGTK 185 (1155)
Q Consensus 167 G~~yl~~GdyeeAle~~~e 185 (1155)
..+++..|+|+.|++++.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh
Confidence 3466778999999999877
No 376
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.28 E-value=33 Score=44.32 Aligned_cols=49 Identities=10% Similarity=0.107 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 224 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 224 ~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
+|.-|+.+++.. +.+...+..+....|..++..|++++|..+|-+++..
T Consensus 349 ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 349 LYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 445566665543 3344456778888999999999999999999998865
No 377
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=75.06 E-value=70 Score=36.11 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHH
Q 001110 260 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 260 yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~-lG~~deAle~lekALei~ 316 (1155)
.++|.+.|++|+++....+.+.||.......|.+..|+. +++.++|..+.++|++-.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 468999999999998877788999988888888887665 589999998888887755
No 378
>PRK10941 hypothetical protein; Provisional
Probab=75.01 E-value=22 Score=40.54 Aligned_cols=78 Identities=22% Similarity=0.211 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCC
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 323 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~d 323 (1155)
...+.||-.+|.+.++++.|+.+.+..+.+ .+++|. -+...|.+|.++|.+..|..-|+.-++.+ ++
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~dp~---e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P~ 247 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQF-----DPEDPY---EIRDRGLIYAQLDCEHVALSDLSYFVEQC-----PE 247 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----CC
Confidence 456788899999999999999999999885 455554 34567999999999999999999888776 55
Q ss_pred cHHHHHHHHHH
Q 001110 324 HIQTAASYHAI 334 (1155)
Q Consensus 324 hp~~a~a~~nL 334 (1155)
.+....+...+
T Consensus 248 dp~a~~ik~ql 258 (269)
T PRK10941 248 DPISEMIRAQI 258 (269)
T ss_pred chhHHHHHHHH
Confidence 55544444333
No 379
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=74.86 E-value=22 Score=39.61 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001110 221 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 298 (1155)
Q Consensus 221 Ale~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~ 298 (1155)
|+.+|.+|+.+ .|.....|+.||.++...|+.=.|+-+|-+++.. .+|. ..+..||..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 78899999998 4788999999999999999999999999999853 2443 5567788877777
No 380
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=74.85 E-value=33 Score=42.57 Aligned_cols=72 Identities=19% Similarity=0.114 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001110 201 TAGAYSLLAVVLYH--TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 275 (1155)
Q Consensus 201 ~A~al~nLG~vy~~--~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e 275 (1155)
...++.+||.+--. ..+-..++.+|.+|+...+..++..| ..-|..+|-+|++.++|.+|+.++-+|-...+
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~ 349 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIR 349 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788876543 23356789999999999999887554 34577799999999999999999888866543
No 381
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=74.85 E-value=58 Score=38.74 Aligned_cols=33 Identities=9% Similarity=-0.107 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 359 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~k 359 (1155)
.+.+++..|..+...+++-+++.+|+.|...++
T Consensus 251 ~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~ 283 (361)
T cd09239 251 ASIAHLHMGKQSEEQQKMGERVAYYQLANDKLE 283 (361)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666667788888888888776543
No 382
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.41 E-value=1.1e+02 Score=40.99 Aligned_cols=132 Identities=19% Similarity=0.129 Sum_probs=73.2
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH------hcCC----HHHHHH
Q 001110 154 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY------HTGD----FNQATI 223 (1155)
Q Consensus 154 ~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~------~~Gd----ydeAle 223 (1155)
.+.....-.-+.+|..|+..|+..+|+.+|.+|..-. |.. .++..+-.-.. ..|+ -..|+.
T Consensus 914 wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~----ge~-----~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lh 984 (1480)
T KOG4521|consen 914 WCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSGF----GEG-----NALRKLVYFLLPKRFSVADGKTPSEELTALH 984 (1480)
T ss_pred hhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhcc----ccH-----HHHHHHHHHhcCCCCchhcCCCCCchHHHHH
Confidence 3344444556677888999999999999999997642 111 12221111100 1121 122445
Q ss_pred HHHHHHHHHHHh----------------cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001110 224 YQQKALDINERE----------------LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 287 (1155)
Q Consensus 224 ~~eKALei~er~----------------lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~ 287 (1155)
||.++++++++. ++.+.+..+.++.++-..+..+|.+-+|.+..-+ .++....-.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---------npdserrrd 1055 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---------NPDSERRRD 1055 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---------CCcHHHHHH
Confidence 555555554432 3556666777777777777777777776654432 122223344
Q ss_pred HHHHHHHHHHHCCChH
Q 001110 288 TYINVAMMEEGLGNVH 303 (1155)
Q Consensus 288 a~~nLA~iy~~lG~~d 303 (1155)
++..+-.++.+.|+++
T Consensus 1056 cLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1056 CLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHHhccchH
Confidence 5556666666666654
No 383
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.22 E-value=90 Score=36.78 Aligned_cols=70 Identities=13% Similarity=-0.060 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-------------------------cCCCChhhHHHHHHHHHHHHHcCCH
Q 001110 206 SLLAVVLYHTGDFNQATIYQQKALDINERE-------------------------LGLDHPDTMKSYGDLAVFYYRLQHT 260 (1155)
Q Consensus 206 ~nLG~vy~~~GdydeAle~~eKALei~er~-------------------------lG~D~p~~a~ay~nLA~iy~~lG~y 260 (1155)
.+-|.+++..++|.+....+..|-.-+++. +++...+.......+|.-|++..++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 345888888899888877766554433321 2222334455556678888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 001110 261 ELALKYVKRALYLLH 275 (1155)
Q Consensus 261 eeAle~yekALei~e 275 (1155)
+.|+--|+++....+
T Consensus 142 ~~ArVEfnRan~rQ~ 156 (449)
T COG3014 142 AKARVEFNRANERQR 156 (449)
T ss_pred hhhHHHHHHHHHHHH
Confidence 888888877776543
No 384
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.78 E-value=22 Score=37.58 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
.....+..+..+-...++.+++...+.- +..+ .|........-|.++...|+|.+|+.+|+...+.
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~A-LrvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------ 73 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDA-LRVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER------ 73 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHH-HHHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------
Confidence 4556677777888888899998876654 4332 4666677778899999999999999999986432
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChh
Q 001110 322 PDHIQTAASYHAIAIALSLMEAYP 345 (1155)
Q Consensus 322 ~dhp~~a~a~~nLA~iy~~lGdye 345 (1155)
.+....+.-.++.|+..+||.+
T Consensus 74 --~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 --APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --CCCChHHHHHHHHHHHHcCChH
Confidence 2334455555888888888765
No 385
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=73.66 E-value=1.6e+02 Score=34.84 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHc
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 362 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~l 362 (1155)
.+.+++.+|......+++-+|+.+++.|...+++..
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 456677788888888999999999999998766554
No 386
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=73.08 E-value=7.8 Score=44.48 Aligned_cols=66 Identities=23% Similarity=0.161 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 231 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei 231 (1155)
..+...+..+.-....|+.++|..+|..|+.+ .|....++..+|.......+.-+|-.+|-+||.+
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 34566677777788899999999999999988 4666778999999998889999999999999887
No 387
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.20 E-value=1.7e+02 Score=34.32 Aligned_cols=109 Identities=13% Similarity=-0.035 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
..+.+...||.+|.+.++|..|-..+.- +..-.-...-+.......+..+|.+|...++..+|..|..++--+.-..
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-- 177 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-- 177 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--
Confidence 4577888999999999999998765532 1110000001123346778899999999999999999998875443221
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 001110 322 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 353 (1155)
Q Consensus 322 ~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkk 353 (1155)
.+...........|+++-..++|-+|.+.|-+
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12111222223346666677777776665543
No 388
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.10 E-value=31 Score=36.12 Aligned_cols=92 Identities=20% Similarity=0.088 Sum_probs=67.8
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001110 154 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 233 (1155)
Q Consensus 154 ~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e 233 (1155)
.+.......+.+.....+..++.+++..++. ++..+ .|.....-..-|.++...|++.+|+..++...+-
T Consensus 4 qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLd-ALrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-- 73 (153)
T TIGR02561 4 QCSNRLLGGLIEVLMYALRSADPYDAQAMLD-ALRVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS-- 73 (153)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--
Confidence 4555566677777777788999999887665 44443 5677777888899999999999999999876542
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHH
Q 001110 234 RELGLDHPDTMKSYGDLAVFYYRLQHTE 261 (1155)
Q Consensus 234 r~lG~D~p~~a~ay~nLA~iy~~lG~ye 261 (1155)
.+....+...++.|++.+|+.+
T Consensus 74 ------~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 74 ------AGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred ------CCCchHHHHHHHHHHHhcCChH
Confidence 2333445556788888888753
No 389
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=72.05 E-value=18 Score=47.94 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=71.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 001110 168 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 247 (1155)
Q Consensus 168 ~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay 247 (1155)
..++....|++|+..|++.-.-+ +...+-..+.+.+|.....+-.-..--+.|.+||..+++..+ .+....-|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 555 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPLEY 555 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCchHH
Confidence 34455555666666665543321 112233467788888877654333333677788887777643 34555678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001110 248 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 288 (1155)
Q Consensus 248 ~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a 288 (1155)
..-|.+|.++|+|++-+++|.-|+..+ +.||.+...
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 591 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRL 591 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHH
Confidence 889999999999999999999998864 457765443
No 390
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.45 E-value=49 Score=38.19 Aligned_cols=74 Identities=24% Similarity=0.284 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..+...+..|...|.+.+|++++++++.+ +|..-..+..|-.++..+||--.|..+|++--+..++-+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 34555678899999999999999999987 6777788888999999999999999999998888888877654
Q ss_pred hh
Q 001110 241 PD 242 (1155)
Q Consensus 241 p~ 242 (1155)
.+
T Consensus 352 dd 353 (361)
T COG3947 352 DD 353 (361)
T ss_pred ch
Confidence 43
No 391
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=71.34 E-value=55 Score=38.26 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
.+.+++.+|..+...+++.+|+.+++.|...++.
T Consensus 250 ~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~ 283 (345)
T cd09034 250 KALAYYYHGLKLDEANKIGEAIARLQAALELLKE 283 (345)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 4445566666666667777777777777665543
No 392
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=71.25 E-value=13 Score=44.73 Aligned_cols=74 Identities=20% Similarity=0.001 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 246 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
++..|..++.-+|+|..|++.++..---.+.++....+....+++.+|-+|..+++|.+|++.|...|-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788899999999998876431111112223344567789999999999999999999999998766554
No 393
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.16 E-value=24 Score=33.49 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=25.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 231 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei 231 (1155)
+|....+.+.+|..+...|++++|++.+..++..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5666778888888888888888888877766653
No 394
>PRK10941 hypothetical protein; Provisional
Probab=71.06 E-value=37 Score=38.79 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 280 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~ 280 (1155)
..+.+.+|-.+|...++++.|+.+.+..+.+ .|+...-+...|.+|.++|.+..|..-++..++.+ +
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence 4567889999999999999999999999987 34445567789999999999999999888887752 4
Q ss_pred CChhHHHHHHHHH
Q 001110 281 SHPNTAATYINVA 293 (1155)
Q Consensus 281 dhp~~a~a~~nLA 293 (1155)
+.|....+...+.
T Consensus 247 ~dp~a~~ik~ql~ 259 (269)
T PRK10941 247 EDPISEMIRAQIH 259 (269)
T ss_pred CchhHHHHHHHHH
Confidence 5565544443333
No 395
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=70.92 E-value=1.3e+02 Score=32.27 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=71.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001110 208 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 287 (1155)
Q Consensus 208 LG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~ 287 (1155)
+-..-...|.|.+|.+++.+.++.- ...+...+|..+++|.....+-..-.+--.+..+.+.-...+..|.++.
T Consensus 99 qva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWat 172 (220)
T PF10858_consen 99 QVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWAT 172 (220)
T ss_pred HHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHH
Confidence 3334556789999999999998863 3456788999999998877543322222233333333334566787877
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 288 TYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 288 a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
+-...|..-...|.-.+|+++++..+..
T Consensus 173 AtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 173 ATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 7777788888899999999999877654
No 396
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=70.77 E-value=77 Score=38.04 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH--HHHHhcCCHHHHHHHHH
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLA--VVLYHTGDFNQATIYQQ 226 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG--~vy~~~GdydeAle~~e 226 (1155)
.+..-...++.++..++|..|...|.+++... ...........+..|+ ..++..-++++|.++++
T Consensus 129 ~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 129 EGNTEQGYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 34455556778999999999999999988652 1112223344455554 45567889999999998
No 397
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=70.74 E-value=1e+02 Score=36.95 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhh-----HHHHHHHHHHHHH-------cCC--------------------HHHH
Q 001110 216 GDFNQATIYQQKALDINERELGLDHPDT-----MKSYGDLAVFYYR-------LQH--------------------TELA 263 (1155)
Q Consensus 216 GdydeAle~~eKALei~er~lG~D~p~~-----a~ay~nLA~iy~~-------lG~--------------------yeeA 263 (1155)
.+.+.-..++++-+++.+.++..-.+.. -..++.||.+|.. ..+ ...|
T Consensus 189 ~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~a 268 (371)
T PF12309_consen 189 EDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKA 268 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHH
Confidence 6777777888888777776654333321 1233444544432 222 2346
Q ss_pred HHHHHHHHHHHHHhc-CC--------CChhHHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHH
Q 001110 264 LKYVKRALYLLHLTC-GP--------SHPNTAATYINVAMMEEGL--GNVHVALRYLHKALKCN 316 (1155)
Q Consensus 264 le~yekALei~e~l~-G~--------dhp~~a~a~~nLA~iy~~l--G~~deAle~lekALei~ 316 (1155)
+.+|+.-+..+...- +. .-.....+++.+|.+|.+. ++..+=++.+.++|..+
T Consensus 269 i~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y 332 (371)
T PF12309_consen 269 IKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYY 332 (371)
T ss_pred HHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHH
Confidence 667776666655311 00 0122467889999999876 44444455555555544
No 398
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.63 E-value=36 Score=32.31 Aligned_cols=72 Identities=18% Similarity=0.079 Sum_probs=41.7
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
+|....+.+.+|..+...|++++|++.+..++..-.. . +-+.|.+.+-..+++.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~--------~---------------~~~~ar~~ll~~f~~l--- 71 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD--------Y---------------EDDAARKRLLDIFELL--- 71 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT--------C---------------CCCHHHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--------c---------------cccHHHHHHHHHHHHc---
Confidence 4666778888888888888888888877776653111 0 1133444444444433
Q ss_pred cCCCcHHHHHHHHHHHHHH
Q 001110 320 LGPDHIQTAASYHAIAIAL 338 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy 338 (1155)
|..||.+......|+.++
T Consensus 72 -g~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 72 -GPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp --TT-HHHHHHHHHHHHHH
T ss_pred -CCCChHHHHHHHHHHHHh
Confidence 666776666666666554
No 399
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=69.83 E-value=16 Score=44.66 Aligned_cols=96 Identities=18% Similarity=0.041 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHh
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---GDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~---GdydeAle~~eKALei~er~ 235 (1155)
.++..+..|.-.+..+....|+..|.+++.. .+....+|.+.|.+++.. |+.-.|+.-+..|+.+
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl---- 440 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL---- 440 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC----
Confidence 3444555555555566677888888888765 356667788888888764 4666677767777665
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001110 236 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRA 270 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekA 270 (1155)
++....+++.|+.++..++++.+|+++...+
T Consensus 441 ----n~s~~kah~~la~aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 441 ----NPSIQKAHFRLARALNELTRYLEALSCHWAL 471 (758)
T ss_pred ----ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 4677889999999999999999999876544
No 400
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=69.36 E-value=99 Score=35.66 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 200 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 279 (1155)
Q Consensus 200 ~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G 279 (1155)
....++..++..+...|+++.++..+++.+.+ +|..-..|..|-..|+..|+...|+..|++.-.....-.|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 45678999999999999999999999998876 5666778888999999999999999999998886555555
Q ss_pred CCC
Q 001110 280 PSH 282 (1155)
Q Consensus 280 ~dh 282 (1155)
-+.
T Consensus 223 i~P 225 (280)
T COG3629 223 IDP 225 (280)
T ss_pred CCc
Confidence 443
No 401
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=68.94 E-value=98 Score=36.68 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 326 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 326 ~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
..+.+++..|......+++-+++.+++.|+..+++.
T Consensus 235 f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a 270 (355)
T cd09241 235 FKAAAHYRMALVALEKSKYGEEVARLRVALAACKEA 270 (355)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 355667777877778888999999999888866543
No 402
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=68.42 E-value=3.1 Score=28.11 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=10.3
Q ss_pred cCCCCCCCccCCC
Q 001110 957 NGNSNVPEFIPGP 969 (1155)
Q Consensus 957 ~~~~~~~~~~~~~ 969 (1155)
.+||+..||+|+.
T Consensus 5 ~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 5 KLNPNAPEFVPSS 17 (18)
T ss_dssp SSSTTSSSS-TTT
T ss_pred ccCCCCccccCCC
Confidence 4899999999974
No 403
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=67.13 E-value=70 Score=36.83 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001110 218 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 297 (1155)
Q Consensus 218 ydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~ 297 (1155)
|..-+...+++++- ....++..++..+...|+++.+.+.+++.+.+ +|..-..|..+-..|.
T Consensus 137 f~~WV~~~R~~l~e----------~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~ 198 (280)
T COG3629 137 FDEWVLEQRRALEE----------LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYL 198 (280)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHH
Confidence 55555555555542 34678889999999999999999999988774 6777778888999999
Q ss_pred HCCChHHHHHHHHHHHHHHHHhcCCCcH
Q 001110 298 GLGNVHVALRYLHKALKCNQRLLGPDHI 325 (1155)
Q Consensus 298 ~lG~~deAle~lekALei~ek~lG~dhp 325 (1155)
..|+...|+..|++.-.....-+|.+..
T Consensus 199 ~~g~~~~ai~~y~~l~~~~~edlgi~P~ 226 (280)
T COG3629 199 VNGRQSAAIRAYRQLKKTLAEELGIDPA 226 (280)
T ss_pred HcCCchHHHHHHHHHHHHhhhhcCCCcc
Confidence 9999999999999988876665665543
No 404
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=66.88 E-value=2.2e+02 Score=31.89 Aligned_cols=59 Identities=22% Similarity=0.144 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHH
Q 001110 176 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINER 234 (1155)
Q Consensus 176 yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~-~~GdydeAle~~eKALei~er 234 (1155)
.+.|...|++|+.++...+.+.||.......+.+..|+ .+|+.++|+.+.++|++-+..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 47899999999999999888999988888888887765 489999999999999887644
No 405
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.64 E-value=88 Score=38.34 Aligned_cols=112 Identities=20% Similarity=0.154 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 001110 165 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 244 (1155)
Q Consensus 165 ~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a 244 (1155)
..+..+..+|..+.|+.+.+.- ...+.|| .+.|+++.|.+..++ .+..
T Consensus 300 ~i~~fL~~~G~~e~AL~~~~D~----------------~~rFeLA---l~lg~L~~A~~~a~~-------------~~~~ 347 (443)
T PF04053_consen 300 SIARFLEKKGYPELALQFVTDP----------------DHRFELA---LQLGNLDIALEIAKE-------------LDDP 347 (443)
T ss_dssp HHHHHHHHTT-HHHHHHHSS-H----------------HHHHHHH---HHCT-HHHHHHHCCC-------------CSTH
T ss_pred HHHHHHHHCCCHHHHHhhcCCh----------------HHHhHHH---HhcCCHHHHHHHHHh-------------cCcH
Confidence 3455666777777766653321 1222222 345666665544321 1223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHH
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 308 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~ 308 (1155)
..|..||.....+|+++.|+++|+++-+.-...+=-.......-+..|+.+....|++.-|...
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~ 411 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQA 411 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 4667777777777777777777776544322110000000123445555666666665555443
No 406
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=66.24 E-value=12 Score=43.10 Aligned_cols=58 Identities=17% Similarity=0.116 Sum_probs=48.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 208 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 208 LG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
.|.-....|+.++|..+|+.|+.+ .|....++..+|.+....++.-+|-.||-+||.+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 333445689999999999999998 3556678889999999999999999999999986
No 407
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=66.22 E-value=6.4 Score=28.46 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 001110 203 GAYSLLAVVLYHTGDFNQATIYQQ 226 (1155)
Q Consensus 203 ~al~nLG~vy~~~GdydeAle~~e 226 (1155)
.++..||.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467899999999999999998876
No 408
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=66.17 E-value=47 Score=34.33 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHCCChH---HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 285 TAATYINVAMMEEGLGNVH---VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 285 ~a~a~~nLA~iy~~lG~~d---eAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
...+.+++|.++....+.+ +.+.+|+..++ . ......-.+.+.||..+++.++|+.|+.|.+..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~-----~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---- 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-S-----AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET---- 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-h-----cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh----
Confidence 4667888999988776543 45555555544 1 222334567788999999999999999999888765
Q ss_pred cCCCCHHHHHHHHH
Q 001110 362 LGPDDLRTQDAAAW 375 (1155)
Q Consensus 362 lG~dh~~t~~al~~ 375 (1155)
.+++.+.......
T Consensus 101 -e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 101 -EPNNRQALELKET 113 (149)
T ss_pred -CCCcHHHHHHHHH
Confidence 4555555444433
No 409
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=66.16 E-value=3.5e+02 Score=35.49 Aligned_cols=189 Identities=9% Similarity=-0.052 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~-~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
.+..+-.+++..|++++-...-.++.+++ +..+.+..-|. ...+++ ..++-.++...|++||.-+..+ ..-
T Consensus 115 ~~v~Li~llrk~~dl~kl~~ar~~~~~~~-----pl~~~lWl~Wl-~d~~~mt~s~~~~~v~~~~ekal~dy~~v--~iw 186 (881)
T KOG0128|consen 115 QMVQLIGLLRKLGDLEKLRQARLEMSEIA-----PLPPHLWLEWL-KDELSMTQSEERKEVEELFEKALGDYNSV--PIW 186 (881)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc-----CCChHHHHHHH-HHHHhhccCcchhHHHHHHHHHhcccccc--hHH
Confidence 34455556677788776554444443332 22233222221 122222 2367778888888887643211 000
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
...+......+..+...++|+.-...|.+||...-.... .-......|.-+-..|...-..++-+.++...+.+-
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~---- 261 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP---- 261 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc----
Confidence 112223333344456667888899999999886543221 122344455555555555555566677777666543
Q ss_pred CCCcHHHHHHHHHHH--HHH-HHcCChhHHHHHHHHHHHHHHHHcCC
Q 001110 321 GPDHIQTAASYHAIA--IAL-SLMEAYPLSVQHEQTTLQILRAKLGP 364 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA--~iy-~~lGdyeeAle~lkkALeI~kk~lG~ 364 (1155)
-++......|.... .++ ....+++.|..-+.+.+..+.+....
T Consensus 262 -~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~ 307 (881)
T KOG0128|consen 262 -LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK 307 (881)
T ss_pred -chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh
Confidence 22222233333333 222 24456666666666665555554433
No 410
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.75 E-value=2.8e+02 Score=32.76 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
.+...+++...|..|.+-|+-+.|++.+.+..+..... ....+..-+...||..|. |.+--.+..++|-.+.++
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~---D~~lV~~~iekak~liE~- 173 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYL---DHDLVTESIEKAKSLIEE- 173 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHh-
Confidence 34556788999999999999999999999887765443 222344445566777665 445555666777777776
Q ss_pred cCCC--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001110 236 LGLD--HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 275 (1155)
Q Consensus 236 lG~D--~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e 275 (1155)
|.| ..+...+| -|...+...+|.+|-.+|..++..+.
T Consensus 174 -GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 174 -GGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred -CCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHccccc
Confidence 444 33444444 46677778889999888888877543
No 411
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=65.59 E-value=3.7e+02 Score=34.04 Aligned_cols=128 Identities=14% Similarity=-0.037 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
......|..........|+++....+|++++.-+- ..-..+...+......|+.+-|-..+.++.++..
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~--- 362 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIHV--- 362 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC---
Confidence 34455666666777788999999999999887542 2345677778888888999999988888888742
Q ss_pred CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHH
Q 001110 279 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 349 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle 349 (1155)
+....+...-|.+....|+++.|...|++...-+ +....+-..-+.....+|+.+.+..
T Consensus 363 ----k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 363 ----KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred ----CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH
Confidence 3334445556788888999999999999876543 3333333344555667788887774
No 412
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=64.87 E-value=88 Score=36.97 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
.+.+++..|..+...+++-+|+..|+.|...++.
T Consensus 254 ~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~ 287 (346)
T cd09240 254 HALAEYHQSLVAKAQKKFGEEIARLQHALELIKT 287 (346)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 4555666777777778888888888888765544
No 413
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=64.82 E-value=80 Score=36.89 Aligned_cols=18 Identities=39% Similarity=0.217 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 001110 217 DFNQATIYQQKALDINER 234 (1155)
Q Consensus 217 dydeAle~~eKALei~er 234 (1155)
....|..+|++|.-+++-
T Consensus 136 ~~k~A~~~fq~AAG~F~~ 153 (345)
T cd09034 136 DLKQAIKSLQKAAGYFEY 153 (345)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466677777777665543
No 414
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=64.74 E-value=2.6e+02 Score=35.13 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=55.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 289 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLG----PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 289 ~~nLA~iy~~lG~~deAle~lekALei~ek~lG----~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
.++++.-+...|.-+++++++.-+....+.... ..-+.....|..+..+|.+.|.+.+|..+.++++.-..+
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~e 229 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKIDE 229 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 457788888999999999999887666554321 112456678889999999999999999999999865543
No 415
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.12 E-value=1.5e+02 Score=38.88 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 207 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 207 nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
..=.+|...|+|++|+++.+..-+ ..-..+..-|.+|+..++|..|.++|-+.+.-++.
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~-----------~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPD-----------ALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 345688899999988887654411 12346777899999999999999999887665443
No 416
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=64.00 E-value=7.7 Score=28.02 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKR 269 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yek 269 (1155)
.++.+||.++..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3578899999999999999988763
No 417
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.89 E-value=3.2e+02 Score=32.46 Aligned_cols=27 Identities=7% Similarity=-0.135 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001110 248 GDLAVFYYRLQHTELALKYVKRALYLL 274 (1155)
Q Consensus 248 ~nLA~iy~~lG~yeeAle~yekALei~ 274 (1155)
.+-|.+++..++|.+....+..+-..+
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~ 88 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRF 88 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHH
Confidence 345777777888877776665554443
No 418
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.79 E-value=4.1e+02 Score=33.26 Aligned_cols=33 Identities=15% Similarity=-0.027 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 412 LLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 412 lL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
..++|+..|..+++|.+|+.+|.+|........
T Consensus 424 RC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~ 456 (593)
T KOG2460|consen 424 RCFYIAVSYQAKKKYSEALALYVRAYSYLQEVN 456 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999988776654
No 419
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.31 E-value=1.6e+02 Score=34.56 Aligned_cols=124 Identities=17% Similarity=0.087 Sum_probs=74.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-------
Q 001110 207 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG------- 279 (1155)
Q Consensus 207 nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G------- 279 (1155)
.+-...++..+..+-+.....||++ .+..+.+|..||.- +.--..+|.+++++||...+..+.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh 258 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQH 258 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 3334444555666667777778877 36667777777653 233456788888888876544321
Q ss_pred --CC--------ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhH
Q 001110 280 --PS--------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 346 (1155)
Q Consensus 280 --~d--------hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyee 346 (1155)
.. ......+-..||++..++|+..+|.+.++...+-.- -.....+.-||-..+..+..|.+
T Consensus 259 ~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p------l~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 259 QSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP------LLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111233445789999999999999999886554220 11233444555555555544443
No 420
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=59.92 E-value=4.2e+02 Score=32.76 Aligned_cols=257 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCcCCccCcCCCCccHHHHHH
Q 001110 8 MRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLNKSHNVHPLVWRW 87 (1155)
Q Consensus 8 mRYLG~V~~l~~kl~hl~~L~~~EMIaRsaKhIlR~~l~~l~~~~~la~aIshfLNcLLG~~~~~~~~~s~~~~~llwk~ 87 (1155)
|.-.-.+..+|+.+...+--+..|-+.-.+-.+|..-+++ .....+...++ .|.--..+......--..+...+.
T Consensus 272 ~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~-~~T~~a~q~l~----lL~~ldp~~svs~Kllls~~~lq~ 346 (549)
T PF07079_consen 272 MSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ-VQTEEAKQYLA----LLKILDPRISVSEKLLLSPKVLQD 346 (549)
T ss_pred hcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH----HHHhcCCcchhhhhhhcCHHHHHH
Q ss_pred HHHHHHHhhchhhccccccccchHHHHHHHHHHHhHHHhhcccCCCCCCCchHHhHHhhchhhhhhcCChHHHHHHHHHH
Q 001110 88 LELFLMKRYEWDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQLLESS 167 (1155)
Q Consensus 88 I~~~lk~rf~y~l~~~~~~~l~kl~LLreL~~k~GiqL~ardY~fd~a~~f~~eDI~~L~pi~K~~~~~s~~A~~Ll~lG 167 (1155)
|- ...+..+..++++-.|=+......+ .+...+..++.-|
T Consensus 347 Iv---------~~DD~~~Tklr~yL~lwe~~qs~Di-------------------------------DrqQLvh~L~~~A 386 (549)
T PF07079_consen 347 IV---------CEDDESYTKLRDYLNLWEEIQSYDI-------------------------------DRQQLVHYLVFGA 386 (549)
T ss_pred HH---------hcchHHHHHHHHHHHHHHHHHhhcc-------------------------------cHHHHHHHHHHHH
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---Chhh
Q 001110 168 KTALDKGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD---HPDT 243 (1155)
Q Consensus 168 ~~yl~~Gd-yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D---~p~~ 243 (1155)
.-+...|. -++|+++++.+++. ...+...-..-..+-.-.+.+---..++..+-+.-.......-.. ....
T Consensus 387 k~lW~~g~~dekalnLLk~il~f-----t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e 461 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQF-----TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE 461 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHH--------------
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL-------------- 309 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~l-------------- 309 (1155)
..-...=|..++.+|+|.++.-|-.-..++ .| ...+|.-+|.++....+|++|..++
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskv 532 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKV 532 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHH
Q ss_pred HHHHHHHHHhcCCC
Q 001110 310 HKALKCNQRLLGPD 323 (1155)
Q Consensus 310 ekALei~ek~lG~d 323 (1155)
++|+.++.+....+
T Consensus 533 qKAl~lCqKh~~kd 546 (549)
T PF07079_consen 533 QKALALCQKHLPKD 546 (549)
T ss_pred HHHHHHHHHhhhhh
No 421
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=59.77 E-value=66 Score=38.42 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=13.3
Q ss_pred cCCCCCCCccCCCC---CCCCc
Q 001110 957 NGNSNVPEFIPGPF---LPGYH 975 (1155)
Q Consensus 957 ~~~~~~~~~~~~~~---~~~~~ 975 (1155)
|.-.-+--|||.++ |.|--
T Consensus 425 N~kaElT~~VPa~lRVRRE~~~ 446 (487)
T KOG4672|consen 425 NLKAELTRLVPAQLRVRREGDN 446 (487)
T ss_pred ccchHHHhhcchheeeeccCCC
Confidence 45566778888887 77643
No 422
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.29 E-value=63 Score=37.38 Aligned_cols=72 Identities=22% Similarity=0.237 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCc
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 324 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dh 324 (1155)
..++..+..|...|.+.+|+++.++++.+ ||..-..+..|-.+|..+|+--.|...|++--+..++-+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 34455678889999999999999999986 5666777888888999999999999999988777777766554
No 423
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=59.29 E-value=1.5e+02 Score=35.33 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 001110 326 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 359 (1155)
Q Consensus 326 ~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~k 359 (1155)
..+.+++..|..+...+++-+|+..++.|.+.++
T Consensus 246 f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k 279 (353)
T cd09243 246 YLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYN 279 (353)
T ss_pred HHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHH
Confidence 3456667777777777778888888877776543
No 424
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.23 E-value=23 Score=41.73 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHH
Q 001110 286 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 350 (1155)
Q Consensus 286 a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~ 350 (1155)
+.-+...|...+.+++++.|...|..|..+....+|..|.....+++..|..++..++++.++-.
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44567789999999999999999999999999999999999999999999999998888776543
No 425
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=58.42 E-value=41 Score=34.79 Aligned_cols=69 Identities=29% Similarity=0.249 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p-~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
...+.+++|.++....+.+. .++-+.+++.++...++ ..-.+.+.||.-++++++|++|++|.+..|+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 45677888888877655432 23444444444432233 44567788999999999999999999988874
No 426
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=57.95 E-value=6.5e+02 Score=34.42 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=14.1
Q ss_pred HHHHHCCChHHHHHHHHHHHHHH
Q 001110 294 MMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 294 ~iy~~lG~~deAle~lekALei~ 316 (1155)
.++...++...|..+..+|.+..
T Consensus 1533 IL~~T~~di~ra~~L~s~A~~a~ 1555 (1758)
T KOG0994|consen 1533 ILSRTKGDIARAENLQSEAERAR 1555 (1758)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHH
Confidence 34555667777777766665544
No 427
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=56.77 E-value=1.8e+02 Score=34.97 Aligned_cols=108 Identities=18% Similarity=0.048 Sum_probs=63.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH--HHcCCHHHHHHHHHHHH--------------
Q 001110 208 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY--YRLQHTELALKYVKRAL-------------- 271 (1155)
Q Consensus 208 LG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy--~~lG~yeeAle~yekAL-------------- 271 (1155)
++..++..++|..|...|.+++.- .+..+.......|..|..+| +..-++++|.+++++.+
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r---~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~ 212 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRR---LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDE 212 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc---ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhH
Confidence 455678889999999999988764 22122233345555555554 55677899999998211
Q ss_pred -----HHHHHhcC------------CCChh--HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 272 -----YLLHLTCG------------PSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 272 -----ei~e~l~G------------~dhp~--~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
.....+.+ ..++. ...-+..-|..-..+|+|+.|+..+-+++++..+
T Consensus 213 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q 278 (380)
T TIGR02710 213 LEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQ 278 (380)
T ss_pred HHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 00000000 01111 1112222244455789999999999888887644
No 428
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=56.18 E-value=1.3e+02 Score=32.09 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 001110 164 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 243 (1155)
Q Consensus 164 l~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~ 243 (1155)
+++-..-...|.|.+|.+++.+.++.- ...+...+|..++.|.+...|-..-+.--.+..+..--......|-.
T Consensus 97 leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFW 170 (220)
T PF10858_consen 97 LEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFW 170 (220)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchH
Confidence 333344567799999999999998873 34567788999999888776543333333333333222223344555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALY 272 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALe 272 (1155)
+.+-...|..-.+.|.-.+|+++++..+.
T Consensus 171 atAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 171 ATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 55555566777788999999999887765
No 429
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.85 E-value=29 Score=41.86 Aligned_cols=87 Identities=21% Similarity=0.348 Sum_probs=37.1
Q ss_pred ccccccceeeccCCCCCCCcccccccCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCcc---CCccCCCCCCC
Q 001110 856 VARASAVAINMTLPPGPGAVTAVAPWPVNMTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNMMQP---LPFMYPPYTQP 932 (1155)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 932 (1155)
-.+.+|+..-+++-| + -.-++||-+|---.-|. . +.-||- -||++|+-||.-=--+-| ||.|| ||+||
T Consensus 390 ~~q~pP~~~q~~~~p--~--~~~~s~p~pq~qNyppp--~-p~f~m~-~~hP~~~~p~~~~g~~~P~~~mpp~~-P~~~~ 460 (483)
T KOG2236|consen 390 HGQKPPQSAQNSFHP--S--SSDNSGPSPQQQNYPPP--S-PSFPMF-QPHPPESNPPANFGQANPFNQMPPAY-PHQQS 460 (483)
T ss_pred cCCCCCcccccccCc--c--ccCCCCCCcccCCCCCC--C-CCCCcc-CCCCCCCCCcccccccCccccCCCCC-ccccC
Confidence 344555555544422 2 22346666654332221 1 222332 344555444432112222 45556 44655
Q ss_pred CCCCCCCCCcccCCCCCCCc
Q 001110 933 QGVPTSTFPVTTSAFHHNHF 952 (1155)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~ 952 (1155)
...|.--+| -.+.||-+|+
T Consensus 461 pppP~~pp~-p~~~~~q~q~ 479 (483)
T KOG2236|consen 461 PPPPPPPPP-PNSPMNQMQN 479 (483)
T ss_pred CCCCCCCCC-CCChhhcccC
Confidence 554422222 2456666655
No 430
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=55.37 E-value=1.9e+02 Score=36.52 Aligned_cols=109 Identities=18% Similarity=0.129 Sum_probs=75.6
Q ss_pred cCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Q 001110 194 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR-ALY 272 (1155)
Q Consensus 194 ~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yek-ALe 272 (1155)
+++.++....+.. +...+...++...+.-.+..++.. .+..+.++.+||......|....++..+.+ +..
T Consensus 60 ~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~ 130 (620)
T COG3914 60 INDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEW 130 (620)
T ss_pred cCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3456677666666 888888889888887777777765 567788999999988887776666554443 433
Q ss_pred HHHHhcCCCChh---HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 273 LLHLTCGPSHPN---TAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 273 i~e~l~G~dhp~---~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+. ++... ....++.++..+..+|+..++..+++++.++.
T Consensus 131 ~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 131 LS-----PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred cC-----cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 21 11111 11223347888899999999999999988876
No 431
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=55.33 E-value=4.2e+02 Score=31.43 Aligned_cols=34 Identities=15% Similarity=0.002 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 001110 326 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 359 (1155)
Q Consensus 326 ~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~k 359 (1155)
..+.+++..|..+...+++-+|+..++.|...+.
T Consensus 245 f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~ 278 (353)
T cd09246 245 FRAEALYRAAKDLHEKEDIGEEIARLRAASDALA 278 (353)
T ss_pred HHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHH
Confidence 4566677788888888999999999998876543
No 432
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=54.77 E-value=43 Score=41.32 Aligned_cols=82 Identities=20% Similarity=0.144 Sum_probs=59.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001110 215 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVKRALYLLHLTCGPSHPNTAATYIN 291 (1155)
Q Consensus 215 ~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG---~yeeAle~yekALei~e~l~G~dhp~~a~a~~n 291 (1155)
.+....|+..|.+++.. .+.....|.+.|.++++.+ +.-.|+.-+..|+.+ ++....+++.
T Consensus 387 ~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~ 450 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHH
Confidence 34566777777777765 3556677888888887653 444555555555553 6778889999
Q ss_pred HHHHHHHCCChHHHHHHHHHH
Q 001110 292 VAMMEEGLGNVHVALRYLHKA 312 (1155)
Q Consensus 292 LA~iy~~lG~~deAle~lekA 312 (1155)
|+.++..++++.+|+.+...+
T Consensus 451 la~aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWAL 471 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHH
Confidence 999999999999999887644
No 433
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.59 E-value=1.9e+02 Score=33.49 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=37.4
Q ss_pred HHHHHHHHCCChHHH-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 001110 291 NVAMMEEGLGNVHVA-LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 352 (1155)
Q Consensus 291 nLA~iy~~lG~~deA-le~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lk 352 (1155)
|++.+....+.-+.. ..+.++|++...+. |.........+..||..+..-+++.+|..+|-
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~~-~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFl 151 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKEF-GEGKYGHPELHALLADKLWTEDNVEEARRHFL 151 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcccHHHHHhHhh
Confidence 444444444443333 34555666665543 22223345677888999999999999988874
No 434
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=53.86 E-value=1.1e+02 Score=37.52 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=19.9
Q ss_pred cccccCCCCC--CCccccccccceeeccCCCCCCCccccc
Q 001110 842 KLSASAVPFN--PSPAVARASAVAINMTLPPGPGAVTAVA 879 (1155)
Q Consensus 842 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1155)
-+|+.|.|-+ |..+.++..+.. |+..|.|+.+|+..
T Consensus 344 s~~~~a~p~~~~pp~~~~~~~~~~--~~~~PsP~~~p~~s 381 (554)
T KOG0119|consen 344 SLSGTARPAGHPPPYSGSSSQPSG--STSGPSPTLLPGSS 381 (554)
T ss_pred CCCCCCCcCCCCCCCCCccccccc--CcCCCCCCCCCccc
Confidence 4555665522 233445555655 45555588888765
No 435
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=53.81 E-value=61 Score=43.43 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=25.4
Q ss_pred CCCCccccccc-cceeeccCCCCCCCcccccccCcccccCCCCcccCCCCCC
Q 001110 850 FNPSPAVARAS-AVAINMTLPPGPGAVTAVAPWPVNMTLHPRPATVLPTVNP 900 (1155)
Q Consensus 850 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1155)
|+|+-..-+.+ |++=. .++|-+|-+| -||-- --+||.++.+++.|
T Consensus 88 ~d~~~~~~~~p~Pi~ss-s~~pq~~F~p---~~p~~--s~sgp~~~~~~~~~ 133 (1639)
T KOG0905|consen 88 FDPSYNEPRGPIPIPSS-SIYPQNYFQP---QWPKA--SLSGPSLYPAPGSP 133 (1639)
T ss_pred ccccccCCCCCCCCccc-ccCCccCCCC---CCCCC--CCCCCcCCCCCCCC
Confidence 66555444444 55544 6666667666 46643 23666666665443
No 436
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.54 E-value=66 Score=33.75 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCC
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 322 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~ 322 (1155)
....+..+...-...++.+++...+.. +.++ .|........-|.++...|+|++|+..|+...+-.
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdA-LrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~------ 74 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDA-LRVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA------ 74 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC------
Confidence 344555555666668888888766543 4432 45666667778999999999999999998765432
Q ss_pred CcHHHHHHHHHHHHHHHHcCChh
Q 001110 323 DHIQTAASYHAIAIALSLMEAYP 345 (1155)
Q Consensus 323 dhp~~a~a~~nLA~iy~~lGdye 345 (1155)
.....+.-.++.|+..+||.+
T Consensus 75 --~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 --GAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred --CCchHHHHHHHHHHHhcCChH
Confidence 122344445788888888764
No 437
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=53.30 E-value=77 Score=40.90 Aligned_cols=99 Identities=30% Similarity=0.438 Sum_probs=52.9
Q ss_pred ccCCCCCCCcccccc---ccceeeccCCCCCCCcccccccCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 001110 845 ASAVPFNPSPAVARA---SAVAINMTLPPGPGAVTAVAPWPVNMTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNMMQP 921 (1155)
Q Consensus 845 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (1155)
-++.+|=|--++++. +|+... -+++ ||+||...|- |.+-|+.+.|+| +|.+||. |-.|-||-+
T Consensus 544 ~s~~~~~P~~ap~s~~~~tp~q~~-~~~~-~~~~~~~~P~---~g~~p~~~~~~P--------~~~~~pt-~~~~pmm~~ 609 (756)
T KOG2375|consen 544 SSPSIFLPRVAPASPMAMTPFQNS-QHNP-PGPVPGYNPQ---MGNPPTGTSVAP--------SPNGSPT-PGSPPMMSP 609 (756)
T ss_pred ccCCCCCCCcCccccCCCCCCccc-cCCC-CCCCCCCCcc---cCCCCCcceecC--------CCCCCCC-CCCCccccc
Confidence 456666665443332 344443 3333 4566665554 555566555555 3445666 555666655
Q ss_pred CC-----ccCCCCCCCCCCCCCCCCcccCCCCCCCccccccCCCCCCCccCCCCCC
Q 001110 922 LP-----FMYPPYTQPQGVPTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLP 972 (1155)
Q Consensus 922 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1155)
+- ---|||.|+|--|..+=+ ++-++-.=|+||.+=+
T Consensus 610 ~~~~s~~~~~pp~pq~~~~p~~~gr---------------~~~~~~t~~~~~~~~~ 650 (756)
T KOG2375|consen 610 QQPGSPPQFMPPYPQPQFSPSGNGR---------------MASVPGTYFVPGKGGN 650 (756)
T ss_pred cccccccccCCCCCCcccCCCcCCC---------------CCCCcccccccccCCc
Confidence 42 223677777765553221 2345556677777655
No 438
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.02 E-value=20 Score=39.93 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=50.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001110 168 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 231 (1155)
Q Consensus 168 ~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei 231 (1155)
+.....++.+.|.++|.+|+.+ -|.++..|+.+|......|+++.|...|++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3456789999999999999988 4788899999999999999999999999999887
No 439
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.71 E-value=1.2e+02 Score=30.62 Aligned_cols=86 Identities=12% Similarity=0.015 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 001110 258 QHTELALKYVKRALYLLHLT-CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 336 (1155)
Q Consensus 258 G~yeeAle~yekALei~e~l-~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~ 336 (1155)
+.-..-..++++++..+... .-.+++....++...|.... .+.+.|...... -.|. ..+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~---~IG~---~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK---GIGT---KLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH---TTST---TBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc---CccH---HHHHHHHHHHH
Confidence 34455567788888776431 11345556666655554322 777777754432 2343 35677888899
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 001110 337 ALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 337 iy~~lGdyeeAle~lkkAL 355 (1155)
.+...|++++|.+.|++++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 440
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=52.47 E-value=3.2e+02 Score=32.40 Aligned_cols=37 Identities=11% Similarity=-0.017 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q 001110 156 SSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVA 192 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~G---------dyeeAle~~~eALel~e~ 192 (1155)
....+..+|++|-++.+.+ .+.+|..+|++|-.++.-
T Consensus 102 ~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~ 147 (355)
T cd09241 102 KFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEY 147 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 3455667777776664432 367788888888776543
No 441
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.74 E-value=82 Score=39.60 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 246 SYGDLAVFYYRLQHTELALKYV-------KRALYLLHLTCGP---SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~y-------ekALei~e~l~G~---dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
....++.++..+|-.++|++.. +-||++-+..... ...+...-|-.||.+....+++..|.++|.+|.++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 3456677777777777776432 2222210000000 00111234678999999999999999999999875
Q ss_pred H
Q 001110 316 N 316 (1155)
Q Consensus 316 ~ 316 (1155)
.
T Consensus 696 ~ 696 (794)
T KOG0276|consen 696 G 696 (794)
T ss_pred h
Confidence 4
No 442
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=51.38 E-value=1e+02 Score=37.88 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=11.0
Q ss_pred CCCCCCCc---cccccccceeeccCC
Q 001110 847 AVPFNPSP---AVARASAVAINMTLP 869 (1155)
Q Consensus 847 ~~~~~~~~---~~~~~~~~~~~~~~~ 869 (1155)
.||=+|.| +-.-++..++|+.-+
T Consensus 386 ~ap~~P~P~aqPg~~~p~~p~n~~p~ 411 (554)
T KOG0119|consen 386 HAPNGPPPVAQPGTPIPRPPQNSAPS 411 (554)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 44434555 434445555665433
No 443
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.81 E-value=87 Score=29.06 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVA 192 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~ 192 (1155)
.|..+...|..+-..|+|++|+.+|.++++.+..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3566777788888999999999999999998765
No 444
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=50.40 E-value=4.8e+02 Score=31.15 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHhhhcC
Q 001110 50 NTQRMAVSIAAALNLMLGV 68 (1155)
Q Consensus 50 ~~~~la~aIshfLNcLLG~ 68 (1155)
....+..++..+|-.|+|-
T Consensus 50 ~~~~~~~a~~~Yl~ll~g~ 68 (353)
T cd09243 50 DVDTVKTAFNAYLSLLQGF 68 (353)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888883
No 445
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.39 E-value=91 Score=41.51 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHcCC
Q 001110 409 VSDLLDYINPSHDTKGR 425 (1155)
Q Consensus 409 vaelL~~Lg~~y~~qGd 425 (1155)
+.+++..||..+...|+
T Consensus 586 ~~elc~~Lg~rl~~~g~ 602 (1049)
T KOG0307|consen 586 FSELCDMLGDRLENAGD 602 (1049)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 44555555555555554
No 446
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.37 E-value=1.3e+02 Score=27.88 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=30.5
Q ss_pred HcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHHHhHHHHHHHH
Q 001110 340 LMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA-AAWLEYFESKAFEQQEAAR 391 (1155)
Q Consensus 340 ~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~a-l~~La~l~qk~~e~AeAi~ 391 (1155)
..|+|++|+.+|..|++.|.. ..++..... ...+..+..+..+.++.+.
T Consensus 18 ~~gny~eA~~lY~~ale~~~~---ekn~~~k~~i~~K~~~~a~~yl~RAE~Lk 67 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCIN---TSNETMDQALQTKLKQLARQALDRAEALK 67 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHHH---hcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998876 233433332 2344444445555555443
No 447
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.23 E-value=2.4e+02 Score=37.09 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 234 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er 234 (1155)
.....++|++.|+|+.|+++....-+. .-.++...|..|+..++|..|.++|-+.+.-++.
T Consensus 361 ~R~vWk~yLd~g~y~kAL~~ar~~p~~-----------le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 361 ARDVWKTYLDKGEFDKALEIARTRPDA-----------LETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred hHHHHHHHHhcchHHHHHHhccCCHHH-----------HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 334567999999999999887654222 2236777888999999999999998887665544
No 448
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=49.75 E-value=4.3e+02 Score=31.26 Aligned_cols=37 Identities=11% Similarity=-0.071 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHH
Q 001110 156 SSADGRQLLESSKTALDKGK---------LEDAVTYGTKALAKLVA 192 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~Gd---------yeeAle~~~eALel~e~ 192 (1155)
....+..+|++|-.+.+.+. +.+|..+|++|-.+++-
T Consensus 115 ~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~ 160 (346)
T cd09240 115 GYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNH 160 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 34456667777665543321 56788888888766543
No 449
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=49.54 E-value=89 Score=40.16 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 001110 926 YPPYTQPQGVPTSTFP 941 (1155)
Q Consensus 926 ~~~~~~~~~~~~~~~~ 941 (1155)
.||+++|..+++-.|+
T Consensus 653 ~pp~~pppp~~p~~~~ 668 (894)
T KOG0132|consen 653 IPPQTPPPPMFPQGFN 668 (894)
T ss_pred CCCCCCCCCCCccCCC
Confidence 3444544444444443
No 450
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=49.34 E-value=59 Score=37.55 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=12.9
Q ss_pred cccceeeccCCCCCCCccccccc
Q 001110 859 ASAVAINMTLPPGPGAVTAVAPW 881 (1155)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~ 881 (1155)
.++..=||.++++|- +|-||.|
T Consensus 68 ~pampqnfQl~sm~l-~PqvG~~ 89 (407)
T PF04625_consen 68 GPAMPQNFQLPSMQL-GPQVGQN 89 (407)
T ss_pred cccchhhccCCCCCC-Ccccchh
Confidence 344455667777654 5666554
No 451
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=49.03 E-value=91 Score=28.88 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 194 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~ 194 (1155)
..+..+...|..+-..|+|++|+.+|.++++.+...+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888899999999999999999987654
No 452
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=48.48 E-value=3.2e+02 Score=32.33 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 285 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 285 ~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
.+.+++.+|......+++-+|+.+|+.|....+.
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 285 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKK 285 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3556677777777778888888888888776543
No 453
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=48.08 E-value=32 Score=40.45 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC------C-----ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 247 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP------S-----HPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 247 y~nLA~iy~~lG~yeeAle~yekALei~e~l~G~------d-----hp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
.-+.+.-.+..++|+.|..-|.+++......-.. + .......+.+++.+-...+.+..|+..-..+++
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~- 303 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR- 303 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc-
Confidence 3456777888999999999999988876531100 0 112244567788888889999988887776665
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001110 316 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 316 ~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~L 376 (1155)
.......+++..++.+..+.++++|++.++.+... .+++......+...
T Consensus 304 -------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~-----~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 304 -------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK-----APNDKAIEEELENV 352 (372)
T ss_pred -------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc-----CcchHHHHHHHHHh
Confidence 23445677899999999999999999999988754 35555544444433
No 454
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=47.69 E-value=19 Score=40.09 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=49.8
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 293 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 293 A~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+.+....++.+.|.++|.+|+++. +..+..|+.+|....+.|+++.|.+.|++.+++
T Consensus 2 a~~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345667889999999999999986 567788999999999999999999999998876
No 455
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=47.31 E-value=99 Score=28.20 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 194 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~ 194 (1155)
.+..++..|...-..|+|++|+.+|.++++.+....
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 456677778888899999999999999999987653
No 456
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.19 E-value=38 Score=28.12 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 001110 164 LESSKTALDKGKLEDAVTYGTKALA 188 (1155)
Q Consensus 164 l~lG~~yl~~GdyeeAle~~~eALe 188 (1155)
+.+|+.|+..|+++.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788999999999999999999885
No 457
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=46.94 E-value=6.9e+02 Score=31.42 Aligned_cols=81 Identities=16% Similarity=0.062 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 001110 175 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 254 (1155)
Q Consensus 175 dyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy 254 (1155)
+..--..++.+.|.+. +.-.+|+.++.+|... .-++-...+++.+++. .+....-..|+..|
T Consensus 81 k~~~veh~c~~~l~~~---------e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--------fnDvv~~ReLa~~y 142 (711)
T COG1747 81 KNQIVEHLCTRVLEYG---------ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--------FNDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--------chhHHHHHHHHHHH
Confidence 3444556677777663 2335788999999887 4455666666666652 23344456678777
Q ss_pred HHcCCHHHHHHHHHHHHHHH
Q 001110 255 YRLQHTELALKYVKRALYLL 274 (1155)
Q Consensus 255 ~~lG~yeeAle~yekALei~ 274 (1155)
.. ++..+|..+|.+|+..+
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRF 161 (711)
T ss_pred HH-hchhhHHHHHHHHHHHh
Confidence 66 88899999999998864
No 458
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=46.82 E-value=5.7e+02 Score=30.46 Aligned_cols=98 Identities=13% Similarity=0.165 Sum_probs=66.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001110 211 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 290 (1155)
Q Consensus 211 vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~ 290 (1155)
+....+|.++|++++++.++-....- .......+...+|.++...|+..++.+.+...-.......+- .+..-..|+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~--e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYK--EPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHH
Confidence 34456699999999999988765531 112456667789999999999999999998888776665432 333444555
Q ss_pred HHHHH-HHHCCChHHHHHHHHHHHH
Q 001110 291 NVAMM-EEGLGNVHVALRYLHKALK 314 (1155)
Q Consensus 291 nLA~i-y~~lG~~deAle~lekALe 314 (1155)
.++.- |...|++.. ||..||.
T Consensus 161 ~lssqYyk~~~d~a~---yYr~~L~ 182 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFAS---YYRHALL 182 (380)
T ss_pred HHHHHHHHHHHhHHH---HHHHHHH
Confidence 56554 556677764 4444444
No 459
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.72 E-value=4.6e+02 Score=32.81 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHc
Q 001110 331 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 362 (1155)
Q Consensus 331 ~~nLA~iy~~lGdyeeAle~lkkALeI~kk~l 362 (1155)
++.+|..|...++|.+|+.+|.+|+..+++..
T Consensus 425 C~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~ 456 (593)
T KOG2460|consen 425 CFYIAVSYQAKKKYSEALALYVRAYSYLQEVN 456 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999999988776653
No 460
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.40 E-value=1.5e+03 Score=35.10 Aligned_cols=37 Identities=5% Similarity=0.027 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 408 SVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 408 svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
..++.+..-|....+.|++++|-+.|..|+++...+.
T Consensus 2810 q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~ 2846 (3550)
T KOG0889|consen 2810 QKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLG 2846 (3550)
T ss_pred HHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhH
Confidence 4677888889999999999999999999999987664
No 461
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=46.38 E-value=77 Score=28.20 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 193 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i 193 (1155)
.|..+...|..+-..|+|++|+.+|.++++.+...
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 45667788888889999999999999999987654
No 462
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=46.21 E-value=6e+02 Score=30.53 Aligned_cols=178 Identities=10% Similarity=-0.042 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhc---C--CCChhHHHHHHHHHHHHHHC----CChHHHHHHHHHHHHHHHHhcCCCcHH--
Q 001110 258 QHTELALKYVKRALYLLHLTC---G--PSHPNTAATYINVAMMEEGL----GNVHVALRYLHKALKCNQRLLGPDHIQ-- 326 (1155)
Q Consensus 258 G~yeeAle~yekALei~e~l~---G--~dhp~~a~a~~nLA~iy~~l----G~~deAle~lekALei~ek~lG~dhp~-- 326 (1155)
-+|++|...|..++..+.+.. . ..-.+.+.+...++.+|..+ .+.+.-+.+.++-+++.+.++..-.+.
T Consensus 138 ~~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y 217 (371)
T PF12309_consen 138 LDFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYY 217 (371)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 467888877777766654421 1 11122345555556555543 566777778887777776654332222
Q ss_pred ---HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhc-C-CCCc
Q 001110 327 ---TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA---KLGPDDLRTQDAAAWLEYFESKAFEQQEAARNG-T-RKPD 398 (1155)
Q Consensus 327 ---~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk---~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~-~-~~~~ 398 (1155)
.-.+++.||.+|..+=+.. ++.... ......+....-...+.....+.++.-...... . ....
T Consensus 218 ~~~~rql~fElae~~~~i~dlk---------~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~ 288 (371)
T PF12309_consen 218 LNLCRQLWFELAEIYSEIMDLK---------LEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLP 288 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Confidence 1234555555554332221 111110 111122222212222222222222221111111 1 1111
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHhhhhc
Q 001110 399 ASIASKGHLSVSDLLDYINPSHDTK---------GRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 399 ~~~a~~~~~svaelL~~Lg~~y~~q---------GdyeeAle~yeKALeL~~kl~ 444 (1155)
.............+++.+|++|.+. +...+++.+|+..+....+..
T Consensus 289 ~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~ 343 (371)
T PF12309_consen 289 EKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHP 343 (371)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 1122233345677888999988554 556667777777777766644
No 463
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.80 E-value=3.7e+02 Score=35.86 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALA 188 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALe 188 (1155)
...+..++..|...|++++|++++.+..+
T Consensus 504 ~~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 504 SKKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 34577788899999999999999988876
No 464
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=45.43 E-value=1.3e+02 Score=26.68 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcC
Q 001110 331 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 363 (1155)
Q Consensus 331 ~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG 363 (1155)
+...|.-+-..|++++|+.+|.+|++.+...+.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 334555566789999999999999998877654
No 465
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=45.21 E-value=1.6e+02 Score=35.45 Aligned_cols=10 Identities=0% Similarity=-0.180 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q 001110 431 KRKTYVAKVK 440 (1155)
Q Consensus 431 e~yeKALeL~ 440 (1155)
++|++.++++
T Consensus 88 Etfer~~rly 97 (487)
T KOG4672|consen 88 ETFERGKRLY 97 (487)
T ss_pred HHHHHHHHhh
Confidence 3444444443
No 466
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=45.06 E-value=5.2e+02 Score=30.57 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
.+.+++..|..+...+++-+|+.+++.|...++.
T Consensus 243 ~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 276 (348)
T cd09242 243 KSLAAYYHALALEAAGKYGEAIAYLTQAESILKE 276 (348)
T ss_pred HHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHH
Confidence 4455666777777778888888888888776544
No 467
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.20 E-value=3.1e+02 Score=36.64 Aligned_cols=155 Identities=11% Similarity=-0.019 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-HHH
Q 001110 284 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG--PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI-LRA 360 (1155)
Q Consensus 284 ~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG--~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI-~kk 360 (1155)
....++.+.++++...|.+-++..++++....+-.... -++.....++.++|.+|...|...++.-+.+-.+-- +..
T Consensus 437 ~~~~iv~~~~r~L~~i~~s~k~~~F~r~~~~kyl~l~n~~m~~r~q~qi~s~~a~myre~g~~rkqaf~~rlsv~~~L~~ 516 (1235)
T KOG1953|consen 437 ERCRIVGAMARMLGSIGFSRKRVKFLRELVSKYLSLTNVLMETRRQNQIKSTMAGMYREVGASRKQAFFKRLSVCNILPL 516 (1235)
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34667888899999999988887777665532211100 112334567778888888887666655443322211 100
Q ss_pred HcC--CCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001110 361 KLG--PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 438 (1155)
Q Consensus 361 ~lG--~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALe 438 (1155)
.-+ ..+.........|.-+..+.+-.+ +....+...... ......+|+.+-.+..+.|+|+.|+.+.-..+.
T Consensus 517 T~~~~~~~~dyKt~~~~l~~lLe~~g~e~-----~~~~d~~sq~~w-~~LQ~kvL~eii~~a~ragd~~aa~~~~s~Ll~ 590 (1235)
T KOG1953|consen 517 TSEICQEYGDYKTDGSLLNPLLEKWGSEA-----KINVDDPSQSTW-SNLQFKVLNEIISLADRAGDYRAALLLISLLLL 590 (1235)
T ss_pred ccchhccCccccccHHHHHHHHHhccccc-----cCCcCccccccc-hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 000 011111111111111111111000 001111111001 113456777787888999999999888766666
Q ss_pred Hhhhhc
Q 001110 439 VKGNFY 444 (1155)
Q Consensus 439 L~~kl~ 444 (1155)
.+..+.
T Consensus 591 ~yypll 596 (1235)
T KOG1953|consen 591 TYYPLL 596 (1235)
T ss_pred Hhhhcc
Confidence 555554
No 468
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=44.20 E-value=1.1e+02 Score=28.41 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 194 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~ 194 (1155)
..|..+...|..+-..|++.+|+.+|+++++.+.++.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3466778888889999999999999999999987764
No 469
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=44.12 E-value=6.1e+02 Score=30.02 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=25.4
Q ss_pred hcCChHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q 001110 153 AACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVA 192 (1155)
Q Consensus 153 ~~~~s~~A~~Ll~lG~~yl~~G---------dyeeAle~~~eALel~e~ 192 (1155)
.......+..+|++|-++.+.+ .+.+|..+|++|-.+++-
T Consensus 100 ~sl~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~ 148 (348)
T cd09242 100 HSLAFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQY 148 (348)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777776665433 356788888888766543
No 470
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=43.95 E-value=72 Score=37.73 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHc
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 362 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~l 362 (1155)
.+.+++..|..+...+++.+|+.+++.|...++...
T Consensus 238 ~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~ 273 (377)
T PF03097_consen 238 RALAHYHQALAAEEAKKYGEAIARLRRAEEALKEAS 273 (377)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 455667777777888888889988888887776543
No 471
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=43.48 E-value=2.2e+02 Score=25.66 Aligned_cols=29 Identities=24% Similarity=0.040 Sum_probs=22.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 250 LAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 250 LA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
.|.-+-..|++++|+.+|.++++.+....
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34445568999999999999999887654
No 472
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.00 E-value=95 Score=39.85 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=62.1
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH---HHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM---KSYGDLAVFYYR---LQHTELALKYVKRAL 271 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a---~ay~nLA~iy~~---lG~yeeAle~yekAL 271 (1155)
+...+.+..+|-..|+...+|+.-+++.+..-.+ +|..+.+ ...+..|.++.+ -|+-++|+.....++
T Consensus 197 ~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i------P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lv 270 (1226)
T KOG4279|consen 197 DVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI------PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLV 270 (1226)
T ss_pred cccCHHHHHHHHhhhccccchHHHHHHHHHHHhC------cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHH
Confidence 4455677788888999999999887766554333 1111111 111222333333 366778877776666
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHH---------HCCChHHHHHHHHHHHHHH
Q 001110 272 YLLHLTCGPSHPNTAATYINVAMMEE---------GLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 272 ei~e~l~G~dhp~~a~a~~nLA~iy~---------~lG~~deAle~lekALei~ 316 (1155)
+. -|...|+ .|+..|.+|. ..+..+.|++||++|.+..
T Consensus 271 e~----eg~vapD---m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve 317 (1226)
T KOG4279|consen 271 EK----EGPVAPD---MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE 317 (1226)
T ss_pred Hh----cCCCCCc---eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC
Confidence 53 2333343 3444455554 4566778999999998753
No 473
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=42.96 E-value=1.9e+02 Score=26.89 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcC
Q 001110 328 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 363 (1155)
Q Consensus 328 a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG 363 (1155)
+..+...|.-+-..|++.+|+.+|++|++.+.+.+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667889999999999999999887654
No 474
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=42.15 E-value=68 Score=39.14 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCCCCCCCccCCccCCCCCCCCCCCCCCCCcccCCCC-----CCCccccccCCCCCCCccCCCCCCCCccc
Q 001110 903 SSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQGVPTSTFPVTTSAFH-----HNHFSWQCNGNSNVPEFIPGPFLPGYHPM 977 (1155)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1155)
+-|||-.||+|.||--.+-..-- |++ ++.+.| |+|-+ -|++-=|-.||+
T Consensus 420 ~~~~~~~ps~p~tPSs~~ads~n----------~a~----~s~a~h~l~~kp~~h~------------tP~~~~q~~~p~ 473 (661)
T KOG2070|consen 420 SVPSHTLPSHPVTPSSKHADSKN----------PAP----LSPAYHTLPHKPSHHG------------TPHTTIQNWGPL 473 (661)
T ss_pred cccccCCCCCCCCcccccccCCC----------CCC----CCcccCcCCCCCCCCC------------CCCCCccccCCC
Confidence 55999999999998653322110 111 122333 33333 488877888999
Q ss_pred ccCCCCCccccCCCcccccccccCCC
Q 001110 978 EFSVPPPVVEPILDPIMQPKAQSGDL 1003 (1155)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1155)
+=|-. .-|-+++.+-|..-|...
T Consensus 474 ~ppk~---~kp~s~S~~~pNmKfa~p 496 (661)
T KOG2070|consen 474 EPPKT---PKPWSLSCLRPNMKFAPP 496 (661)
T ss_pred CCCCC---CCCcchhhcCCCcccCCC
Confidence 85444 489999999997766553
No 475
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=42.15 E-value=1.6e+02 Score=33.03 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=62.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCC---CCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001110 211 VLYHTGDFNQATIYQQKALDINERELGL---DHP-DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 286 (1155)
Q Consensus 211 vy~~~GdydeAle~~eKALei~er~lG~---D~p-~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a 286 (1155)
..+..|+|+.|+++...||+.-...-.. +-+ -++.-...-+......|+.-+. .+++....+. ....-.+...+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~dmpd~vrA 169 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEWDMPDEVRA 169 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcCCCChHHHH
Confidence 4567899999999999999863221100 111 1233344455555666653221 1233333332 22222344456
Q ss_pred HHHHHHHHHHH---------HCCChHHHHHHHHHHHHHHHH
Q 001110 287 ATYINVAMMEE---------GLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 287 ~a~~nLA~iy~---------~lG~~deAle~lekALei~ek 318 (1155)
..|-.+|..+. ..++...|+.+|++|+.+..+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 77777888773 456888999999999998644
No 476
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=41.64 E-value=88 Score=29.29 Aligned_cols=36 Identities=17% Similarity=-0.067 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 279 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G 279 (1155)
+..+.+.|..+-..|+.++|+.+|++++..+.+.+.
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 444555666666778999999999999998877543
No 477
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=41.42 E-value=3.4e+02 Score=35.74 Aligned_cols=115 Identities=14% Similarity=0.101 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH-HHHH-HHHHHHHHHHHhcCC
Q 001110 203 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE-LALK-YVKRALYLLHLTCGP 280 (1155)
Q Consensus 203 ~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~ye-eAle-~yekALei~e~l~G~ 280 (1155)
+.+..-|.+.-..+--+-|.++|.+|+.++|... .|+.....+...+...+.+...+. +-.+ +..++.....+++
T Consensus 593 kL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~I-sDSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yasKLL-- 669 (762)
T PF03635_consen 593 KLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEI-SDSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYASKLL-- 669 (762)
T ss_dssp HHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHC-S--
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHhc--
Confidence 3444445555555544558899999999999754 355555566666666555544442 2211 1122222222222
Q ss_pred CChhHHHHHHHHHHHHHHCC----------ChHHHHHHHHHHHHHHHHhc
Q 001110 281 SHPNTAATYINVAMMEEGLG----------NVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 281 dhp~~a~a~~nLA~iy~~lG----------~~deAle~lekALei~ek~l 320 (1155)
..++-.++.+..|.+++... +-...+++++||++++....
T Consensus 670 KK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~m 719 (762)
T PF03635_consen 670 KKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCM 719 (762)
T ss_dssp SHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSS
T ss_pred CcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHh
Confidence 24666777777777777554 45678999999999987653
No 478
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.78 E-value=1.5e+02 Score=29.91 Aligned_cols=86 Identities=10% Similarity=0.014 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 001110 174 GKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 252 (1155)
Q Consensus 174 GdyeeAle~~~eALel~e~i-~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~ 252 (1155)
+.-..-..++++++..+... .-.+++.....|..+|.... .+.+.|..... +-.| ...+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~---~~IG---~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYS---KGIG---TKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHH---HTTS---TTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHH---cCcc---HHHHHHHHHHHH
Confidence 34444456677777766432 11234555555555554322 67777765443 2233 345778889999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 001110 253 FYYRLQHTELALKYVKRAL 271 (1155)
Q Consensus 253 iy~~lG~yeeAle~yekAL 271 (1155)
++...|++++|.+.|++++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999999875
No 479
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.70 E-value=2.8e+02 Score=25.79 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 332 HAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 332 ~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
...|.-+-..|+|++|+.+|++|++.+..
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 33455555789999999999999999987
No 480
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=40.24 E-value=1.6e+02 Score=26.68 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 194 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~ 194 (1155)
.+..+...|...-..|+|++|+.+|.+|++.+....
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 345566677777788999999999999999987654
No 481
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=39.70 E-value=1e+02 Score=28.89 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 286 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 286 a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
+..+.+.|..+...|+.++|+.+|++++....+...
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 344555666667778999999999999998876543
No 482
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=39.56 E-value=7.3e+02 Score=29.62 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHH
Q 001110 155 CSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLV 191 (1155)
Q Consensus 155 ~~s~~A~~Ll~lG~~yl~~G---------dyeeAle~~~eALel~e 191 (1155)
.....+..+|++|-+|.+.| .+.+|..+|++|--.+.
T Consensus 101 l~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~ 146 (350)
T cd09244 101 VAFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFN 146 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 34456777788777664433 25678888888766654
No 483
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=39.39 E-value=1.7e+02 Score=27.00 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 194 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~ 194 (1155)
.+..+...|...-..|+|++|+.+|.++++.+...+
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~ 40 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPAL 40 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 455677777778889999999999999999987654
No 484
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.21 E-value=45 Score=27.70 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=23.0
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHH
Q 001110 290 INVAMMEEGLGNVHVALRYLHKALK 314 (1155)
Q Consensus 290 ~nLA~iy~~lG~~deAle~lekALe 314 (1155)
++||.+|..+|+++.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5799999999999999999999884
No 485
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=38.89 E-value=1.4e+02 Score=36.56 Aligned_cols=125 Identities=18% Similarity=0.089 Sum_probs=67.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 001110 168 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 247 (1155)
Q Consensus 168 ~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay 247 (1155)
...+..|++-.|-+-+..+|... +..|. .....+.++.++|+|+.|...+-.+-.+ +|..+ .+.
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~-----~~~p~---~i~l~~~i~~~lg~ye~~~~~~s~~~~~----~~s~~----~~~ 360 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQ-----QQDPV---LIQLRSVIFSHLGYYEQAYQDISDVEKI----IGTTD----STL 360 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhC-----CCCch---hhHHHHHHHHHhhhHHHHHHHhhchhhh----hcCCc----hHH
Confidence 34566788888877777776552 12233 3445688889999999998776554333 22221 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 248 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 248 ~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
..+-.-.+.+|++++|+....-.|.- + -..++.. .--|.....+|-+++|+.++++.+.+.
T Consensus 361 ~~~~r~~~~l~r~~~a~s~a~~~l~~--e---ie~~ei~---~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 361 RCRLRSLHGLARWREALSTAEMMLSN--E---IEDEEVL---TVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHhcc--c---cCChhhe---eeecccHHHHhHHHHHHHHHHHHhccC
Confidence 23334456677777776554433220 0 0122222 112233344555666666666665543
No 486
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=38.85 E-value=3e+02 Score=25.41 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=31.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 256 RLQHTELALKYVKRALYLLHLTC-GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 256 ~lG~yeeAle~yekALei~e~l~-G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
..|+|++|+.+|..+++.+.... +..++..-.+. -.+..+|+.+|-++...
T Consensus 18 ~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~i------------r~K~~eYl~RAE~i~~~ 69 (75)
T cd02677 18 EEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAV------------KRKIAEYLKRAEEILRL 69 (75)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 44899999999999999887643 22233322222 13455666676666543
No 487
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.55 E-value=2.9e+02 Score=36.75 Aligned_cols=109 Identities=13% Similarity=0.123 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHH----h
Q 001110 204 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHL----T 277 (1155)
Q Consensus 204 al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~y--eeAle~yekALei~e~----l 277 (1155)
-|..|+.+|...|+.++|++++++...-... .+......+-.+-..+..++.- +..++|-.-.+.-... +
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~----~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~I 581 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSD----TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQI 581 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccc----cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheee
Confidence 4778999999999999999999988773310 1122223333344444444443 4444444333321100 0
Q ss_pred cCCCChhHHHHHHHHH-HHHHHCCChHHHHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVA-MMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA-~iy~~lG~~deAle~lekALei~ 316 (1155)
+-.++...+.....-. .-|......+-++.|++.++...
T Consensus 582 ft~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~ 621 (877)
T KOG2063|consen 582 FTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN 621 (877)
T ss_pred eeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc
Confidence 0011111111111111 12345667778889999888765
No 488
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=37.76 E-value=48 Score=38.30 Aligned_cols=114 Identities=21% Similarity=0.288 Sum_probs=61.5
Q ss_pred ccccCCCCcccCCCCCCCCCCC-CCCCCCCCCCCCCCccCCccCCCCCCCCCCCCCCCCcccCCCCC-CC-ccccccCCC
Q 001110 884 NMTLHPRPATVLPTVNPMCSSP-HQPYPSPPSTPNMMQPLPFMYPPYTQPQGVPTSTFPVTTSAFHH-NH-FSWQCNGNS 960 (1155)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 960 (1155)
+||+|||-+. .|.-.=| +.|-|-|+.-|-.-||.|.|=+.|+.--..--|.||.|.=.--- .+ -+| .
T Consensus 6 dmt~~pgas~-----spF~aLPf~pp~pgP~~qp~wep~pP~~~~~fppg~PLvLsafP~tpLVagdgg~gpsg-----A 75 (328)
T PF12881_consen 6 DMTMNPGASM-----SPFTALPFPPPAPGPPHQPPWEPPPPLMTAAFPPGNPLVLSAFPRTPLVAGDGGPGPSG-----A 75 (328)
T ss_pred CcccCCCCCC-----CccccCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccccccCCCCccccCCCCCCCCC-----C
Confidence 7999999532 1111112 33445555555566666888777775555556888876421110 00 022 1
Q ss_pred CCCCccCCCCCCCCcccccCCCCCcccc-CCCcccccccccCCCCCCCC
Q 001110 961 NVPEFIPGPFLPGYHPMEFSVPPPVVEP-ILDPIMQPKAQSGDLDSSCS 1008 (1155)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 1008 (1155)
-... |--.||.+=+|+|.+..--+|=. .+=...-|-++|++.+.+.+
T Consensus 76 g~~n-VivqVrteg~pvep~qtQ~~VLtQ~pLnw~apga~~gg~~~P~P 123 (328)
T PF12881_consen 76 GPGN-VIVQVRTEGRPVEPPQTQNFVLTQAPLNWNAPGALCGGVECPAP 123 (328)
T ss_pred ccce-EEEEeecCCccCCCCccceeEeecccccccCCcCccCCCCCCCC
Confidence 1111 23356888889988877655532 22223446677777666533
No 489
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.55 E-value=6e+02 Score=28.03 Aligned_cols=105 Identities=22% Similarity=0.110 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 205 YSLLAVVLYHTGDFNQATIYQQKALDINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 205 l~nLG~vy~~~GdydeAle~~eKALei~er~lG--~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dh 282 (1155)
+...+....+.|++++|...+++|.+..++... ..+|+ .+.-|.+-..+..|-+|.-+|.-.-.- ....
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe----l~~ag~~~~a~QEyvEA~~l~~~l~~~-----~~ps 102 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE----LYFAGFVTTALQEYVEATLLYSILKDG-----RLPS 102 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHhhcchHHHHHHHHHHHHHHhcC-----CCCC
Confidence 445566667889999999999999887665410 11222 222344545566666776554322111 0111
Q ss_pred hh-----HHHHHHHHH----------HHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 283 PN-----TAATYINVA----------MMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 283 p~-----~a~a~~nLA----------~iy~~lG~~deAle~lekALei~ek 318 (1155)
+. .......+| ......|++++|..+|+-.-.++..
T Consensus 103 ~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~ 153 (204)
T COG2178 103 PEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEE 153 (204)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 11 111222222 3344678888888877655555443
No 490
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=37.39 E-value=46 Score=39.29 Aligned_cols=103 Identities=16% Similarity=0.031 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-------C-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001110 205 YSLLAVVLYHTGDFNQATIYQQKALDINERELGL-------D-----HPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 272 (1155)
Q Consensus 205 l~nLG~vy~~~GdydeAle~~eKALei~er~lG~-------D-----~p~~a~ay~nLA~iy~~lG~yeeAle~yekALe 272 (1155)
....|...+..++|+.|..-|.+++..... ... + .......+.+++.+-+..+.+..|+.....++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcc-cccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 344566778889999999999999887653 111 1 112345677899999999999999877766665
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 273 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 273 i~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
..+....+++..+..+..+.++++|++.++.|....
T Consensus 304 --------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~ 339 (372)
T KOG0546|consen 304 --------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKA 339 (372)
T ss_pred --------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccC
Confidence 355667889999999999999999999999987654
No 491
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=37.09 E-value=1.1e+03 Score=31.10 Aligned_cols=25 Identities=28% Similarity=0.070 Sum_probs=14.5
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHH
Q 001110 290 INVAMMEEGLGNVHVALRYLHKALK 314 (1155)
Q Consensus 290 ~nLA~iy~~lG~~deAle~lekALe 314 (1155)
..-|.+|...|++.+|...|+.|+.
T Consensus 939 ~~aa~aye~~gK~~Ea~gay~sA~m 963 (1243)
T COG5290 939 ISAAKAYEVEGKYIEAHGAYDSALM 963 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666655553
No 492
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=36.51 E-value=2.7e+02 Score=33.22 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001110 260 TELALKYVKRALYLLHL 276 (1155)
Q Consensus 260 yeeAle~yekALei~e~ 276 (1155)
+.+|..+|++|--++..
T Consensus 131 lK~A~~~Fq~AAG~F~~ 147 (350)
T cd09244 131 IEAAVDAFQRAAGAFNY 147 (350)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888887665543
No 493
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.13 E-value=51 Score=42.10 Aligned_cols=184 Identities=14% Similarity=0.102 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH---HHHHHHHHH---HCCChHHHHHHHHHHHHH
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT---YINVAMMEE---GLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a---~~nLA~iy~---~lG~~deAle~lekALei 315 (1155)
....+..+|-..|....+|+.-+++.+..-.+ ++.-..+.. .+..|.++. +-|+-++|+...-.+++.
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i------P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI------PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK 272 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHHHhC------cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh
Confidence 34567788888899999999877766543332 111111111 111233333 346677777776666653
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHH---------HcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHH
Q 001110 316 NQRLLGPDHIQTAASYHAIAIALS---------LMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ 386 (1155)
Q Consensus 316 ~ek~lG~dhp~~a~a~~nLA~iy~---------~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~ 386 (1155)
. |.-.+ ..|..-|++|. ..+..+.|+.||++|++.--..+..-+. ..|.....+.++.
T Consensus 273 e----g~vap---Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~------atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 273 E----GPVAP---DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINL------ATLLRAAGEHFEN 339 (1226)
T ss_pred c----CCCCC---ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccH------HHHHHHhhhhccc
Confidence 2 32222 33444566664 3456677888888888753222111111 1222222222222
Q ss_pred HHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHhhhhc
Q 001110 387 QEAARNGTRKPDASIASKGHLSVSDLLDYINPSH---DTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 387 AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y---~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
...++.....+...+..++......-|+..|..+ ...++|.+|+..-++..++..-..
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 2222111111111222233333333344444333 446889999888888777766543
No 494
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=35.85 E-value=3.4e+02 Score=25.17 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=27.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHcC-CCCHHHHH
Q 001110 333 AIAIALSLMEAYPLSVQHEQTTLQILRAKLG-PDDLRTQD 371 (1155)
Q Consensus 333 nLA~iy~~lGdyeeAle~lkkALeI~kk~lG-~dh~~t~~ 371 (1155)
..|.-+-..|+|++|+.+|.++++.+...+. ..++....
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~ 50 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKK 50 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Confidence 3445555779999999999999999887552 33444433
No 495
>PRK14707 hypothetical protein; Provisional
Probab=35.85 E-value=5.4e+02 Score=37.52 Aligned_cols=187 Identities=14% Similarity=0.025 Sum_probs=104.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 001110 169 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGA--YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 246 (1155)
Q Consensus 169 ~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~a--l~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~a 246 (1155)
++-..+++-++..+-.-+..+...+- .++....+ -..++.++-.++++.+...+-.-|+.+..++. +++.....
T Consensus 840 aLNALSKWPd~~~Cr~AA~aLA~RLa--~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~--~d~~Lrqa 915 (2710)
T PRK14707 840 VLNAMSKWPDNAVCAAAAGAMAERLA--DEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA--DEPELRKA 915 (2710)
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHh--cChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh--cCHHHHhh
Confidence 33344444444444444444443331 12222222 23456666667777777777777777777763 23333333
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCC
Q 001110 247 --YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT--YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 322 (1155)
Q Consensus 247 --y~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a--~~nLA~iy~~lG~~deAle~lekALei~ek~lG~ 322 (1155)
-..++.++..+.+|.++-.+-.-+..+...+.. .+..... -..++.++..+++|-+.-.+-.-|..+...+...
T Consensus 916 l~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~--d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~ 993 (2710)
T PRK14707 916 LSAHRVATALNALSKWPDIPVCATAASALAERLSD--DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDE 993 (2710)
T ss_pred ccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc--ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhcc
Confidence 356888888888888776666666666655532 2333232 3457788888888888777777776666554211
Q ss_pred CcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 323 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 323 dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
.....+..-..++.++..+.+|.++-.+-+-+..+...+
T Consensus 994 ~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rL 1032 (2710)
T PRK14707 994 PALRNALDPIGMANALNALSKWLQMPVCAATVEALAARL 1032 (2710)
T ss_pred HHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHh
Confidence 111112223456777777777766555555555555443
No 496
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.51 E-value=2.2e+02 Score=32.03 Aligned_cols=106 Identities=18% Similarity=0.101 Sum_probs=62.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCCh-hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcH
Q 001110 250 LAVFYYRLQHTELALKYVKRALYLLHLTCG---PSHP-NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 325 (1155)
Q Consensus 250 LA~iy~~lG~yeeAle~yekALei~e~l~G---~dhp-~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp 325 (1155)
+-...+..|+|+.|+++..-||+.-..+-. .+-+ .+++....-+......|+.-+. .++.....+. ....-...
T Consensus 89 ~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~dmpd~ 166 (230)
T PHA02537 89 VMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEWDMPDE 166 (230)
T ss_pred eeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcCCCChH
Confidence 334567889999999999999985222110 0111 1234444555566666663222 2233333333 22222234
Q ss_pred HHHHHHHHHHHHHH---------HcCChhHHHHHHHHHHHH
Q 001110 326 QTAASYHAIAIALS---------LMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 326 ~~a~a~~nLA~iy~---------~lGdyeeAle~lkkALeI 357 (1155)
..+..|-.+|..+. ..++...|+.+|++|+++
T Consensus 167 vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 167 VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 45666777777773 456788999999999987
No 497
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=35.32 E-value=2e+02 Score=25.92 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 194 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~ 194 (1155)
.+..+...|..+-..|++++|+.+|.++++.+....
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 355667777788889999999999999999987654
No 498
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=34.29 E-value=8.1e+02 Score=28.60 Aligned_cols=144 Identities=14% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-----
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL----- 236 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l----- 236 (1155)
.....-+..+.++++.+.++.+++.+.. .+......+..+.++..+| ++.+.+..+..+..+-..+
T Consensus 101 d~~~~~~~~~~~~~~~~Ll~~~E~sl~~--------~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~ 171 (301)
T TIGR03362 101 DRVADYQELLAQADWAALLQRVEQSLSL--------APFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLE 171 (301)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhh
Q ss_pred ----CCCChhhHHHHHHH------------------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 237 ----GLDHPDTMKSYGDL------------------------------AVFYYRLQHTELALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 237 ----G~D~p~~a~ay~nL------------------------------A~iy~~lG~yeeAle~yekALei~e~l~G~dh 282 (1155)
+....-...+..-| +..+...+.++.|+..++..+.- ....
T Consensus 172 L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~-----~~s~ 246 (301)
T TIGR03362 172 LKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQ-----AREP 246 (301)
T ss_pred cccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhccc-----CCCh
Q ss_pred hhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 283 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 283 p~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
.+.......++.++...|.++-|..+|++..+..++.
T Consensus 247 R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~ 283 (301)
T TIGR03362 247 RERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQL 283 (301)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
No 499
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=33.98 E-value=73 Score=33.39 Aligned_cols=110 Identities=19% Similarity=-0.017 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC----------------------------C---ChhhHHHHHHHHHH
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP----------------------------Y---HRMTAGAYSLLAVV 211 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~----------------------------d---~p~~A~al~nLG~v 211 (1155)
....++..+..|+.++|+..+.+|...+...... + ...........+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 4566788899999999999999998886532100 0 11234456667778
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001110 212 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 272 (1155)
Q Consensus 212 y~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALe 272 (1155)
++..|+...|.+.++-+-.-..-..-.-...........|..+...|+|.+|...+..++.
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8889999988877665421000000000112334556788899999999999999998875
No 500
>PRK14707 hypothetical protein; Provisional
Probab=33.73 E-value=2.9e+02 Score=39.87 Aligned_cols=162 Identities=12% Similarity=-0.043 Sum_probs=88.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001110 206 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 285 (1155)
Q Consensus 206 ~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~ 285 (1155)
..++.++..+.++.+.-.+-.-+..+..++........+..-..++.++..+-+|.+.-.+-+-++.+...+....++..
T Consensus 1045 Q~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~ 1124 (2710)
T PRK14707 1045 QGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRH 1124 (2710)
T ss_pred HHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhc
Confidence 34555666666666555555555555555422111112233346778888888888877788888888877655445444
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCC
Q 001110 286 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 365 (1155)
Q Consensus 286 a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~d 365 (1155)
......++.++..+.+|-....+=.-+..+..++........+..-..+|..+..+.++-+.-.+-+-++.+........
T Consensus 1125 ~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~ 1204 (2710)
T PRK14707 1125 VFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAE 1204 (2710)
T ss_pred cCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCC
Confidence 44445566666666666544444444444444443332222333344566666666666655555554455544443333
Q ss_pred CH
Q 001110 366 DL 367 (1155)
Q Consensus 366 h~ 367 (1155)
++
T Consensus 1205 ~P 1206 (2710)
T PRK14707 1205 LP 1206 (2710)
T ss_pred CC
Confidence 33
Done!