Query 001110
Match_columns 1155
No_of_seqs 692 out of 3848
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 11:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nf1_A KLC 1, kinesin light ch 99.9 3E-23 1E-27 223.8 33.1 287 156-442 23-310 (311)
2 3edt_B KLC 2, kinesin light ch 99.9 1.3E-23 4.3E-28 222.7 24.8 268 171-440 12-282 (283)
3 3ulq_A Response regulator aspa 99.9 1.8E-21 6.1E-26 221.0 31.3 266 161-445 104-374 (383)
4 4a1s_A PINS, partner of inscut 99.9 4.5E-21 1.5E-25 217.3 30.0 276 159-444 85-377 (411)
5 3sf4_A G-protein-signaling mod 99.9 1.2E-20 4.2E-25 211.2 29.8 276 159-444 46-341 (406)
6 3ro2_A PINS homolog, G-protein 99.9 1.4E-20 4.7E-25 203.1 29.0 276 159-444 42-337 (338)
7 3q15_A PSP28, response regulat 99.9 1.1E-20 3.6E-25 214.9 28.3 266 160-445 101-371 (378)
8 4a1s_A PINS, partner of inscut 99.9 2.7E-20 9.1E-25 210.9 30.0 276 157-444 45-337 (411)
9 3ro2_A PINS homolog, G-protein 99.9 1E-19 3.5E-24 196.3 30.5 272 159-444 4-297 (338)
10 3sf4_A G-protein-signaling mod 99.9 6.4E-20 2.2E-24 205.4 29.2 273 160-444 9-301 (406)
11 3edt_B KLC 2, kinesin light ch 99.8 2.6E-19 8.9E-24 189.5 27.8 201 157-357 40-281 (283)
12 3nf1_A KLC 1, kinesin light ch 99.8 4.5E-18 1.6E-22 183.3 29.4 203 156-358 65-308 (311)
13 3uq3_A Heat shock protein STI1 99.8 3.1E-17 1.1E-21 171.8 28.6 239 158-444 3-241 (258)
14 2pl2_A Hypothetical conserved 99.8 2.7E-18 9.2E-23 181.3 20.0 197 160-437 5-212 (217)
15 4eqf_A PEX5-related protein; a 99.8 5.2E-18 1.8E-22 189.6 22.8 250 160-445 65-316 (365)
16 1w3b_A UDP-N-acetylglucosamine 99.8 6.1E-17 2.1E-21 182.8 31.3 238 159-442 134-371 (388)
17 3u4t_A TPR repeat-containing p 99.8 8.4E-19 2.9E-23 186.8 14.8 244 161-443 4-254 (272)
18 1w3b_A UDP-N-acetylglucosamine 99.8 2.2E-17 7.4E-22 186.5 25.6 237 159-441 66-302 (388)
19 1fch_A Peroxisomal targeting s 99.8 1.9E-17 6.5E-22 183.9 21.0 254 160-444 64-364 (368)
20 3hym_B Cell division cycle pro 99.7 1.5E-17 5E-22 180.9 18.0 241 162-442 58-302 (330)
21 3vtx_A MAMA; tetratricopeptide 99.7 7.3E-17 2.5E-21 163.2 21.9 166 160-357 5-170 (184)
22 4g1t_A Interferon-induced prot 99.7 8.4E-17 2.9E-21 185.9 25.4 261 160-441 51-365 (472)
23 2h6f_A Protein farnesyltransfe 99.7 5.2E-17 1.8E-21 188.1 23.2 243 153-441 90-350 (382)
24 3hym_B Cell division cycle pro 99.7 5.1E-17 1.7E-21 176.6 21.4 245 160-442 22-268 (330)
25 3n71_A Histone lysine methyltr 99.7 3.6E-17 1.2E-21 195.5 21.3 157 160-316 309-465 (490)
26 1hz4_A MALT regulatory protein 99.7 7.9E-16 2.7E-20 173.1 31.2 271 159-443 13-286 (373)
27 1qqe_A Vesicular transport pro 99.7 9.1E-17 3.1E-21 177.2 22.9 191 161-358 38-229 (292)
28 3ieg_A DNAJ homolog subfamily 99.7 1.8E-16 6.2E-21 173.5 24.4 241 160-441 37-303 (359)
29 3fp2_A TPR repeat-containing p 99.7 2.2E-16 7.4E-21 184.6 26.1 245 159-444 242-496 (537)
30 2q7f_A YRRB protein; TPR, prot 99.7 7E-17 2.4E-21 168.3 19.5 206 158-443 21-226 (243)
31 4gyw_A UDP-N-acetylglucosamine 99.7 5.7E-17 2E-21 202.2 22.3 174 156-361 5-178 (723)
32 2ho1_A Type 4 fimbrial biogene 99.7 2.9E-16 9.9E-21 165.6 24.4 205 160-442 37-241 (252)
33 2ifu_A Gamma-SNAP; membrane fu 99.7 1.3E-16 4.4E-21 177.3 22.1 221 172-442 3-226 (307)
34 3ieg_A DNAJ homolog subfamily 99.7 6.9E-16 2.4E-20 168.9 27.4 246 159-442 2-266 (359)
35 2y4t_A DNAJ homolog subfamily 99.7 2.8E-16 9.4E-21 179.8 25.2 251 157-440 23-325 (450)
36 3n71_A Histone lysine methyltr 99.7 9.7E-17 3.3E-21 191.8 22.0 154 205-358 312-465 (490)
37 3ulq_A Response regulator aspa 99.7 1.7E-15 5.7E-20 171.9 30.9 218 154-385 137-354 (383)
38 4eqf_A PEX5-related protein; a 99.7 3.1E-17 1E-21 183.4 15.6 258 159-444 98-361 (365)
39 3q15_A PSP28, response regulat 99.7 6.1E-16 2.1E-20 175.7 26.5 204 154-363 135-371 (378)
40 2vq2_A PILW, putative fimbrial 99.7 1.6E-15 5.3E-20 155.5 26.6 208 157-442 5-214 (225)
41 1hz4_A MALT regulatory protein 99.7 8.4E-16 2.9E-20 172.9 26.5 274 159-444 52-327 (373)
42 3vtx_A MAMA; tetratricopeptide 99.7 4.4E-16 1.5E-20 157.5 21.5 171 201-443 4-174 (184)
43 3cv0_A Peroxisome targeting si 99.7 3.1E-16 1.1E-20 170.1 21.0 238 160-443 21-273 (327)
44 2y4t_A DNAJ homolog subfamily 99.7 1.1E-15 3.7E-20 174.9 26.0 247 159-442 93-361 (450)
45 3qky_A Outer membrane assembly 99.7 2.2E-15 7.4E-20 161.8 25.3 204 158-386 13-248 (261)
46 3u3w_A Transcriptional activat 99.7 1E-15 3.5E-20 168.2 22.4 194 158-361 73-270 (293)
47 4gyw_A UDP-N-acetylglucosamine 99.7 3.6E-16 1.2E-20 195.0 21.2 176 197-444 4-179 (723)
48 3cv0_A Peroxisome targeting si 99.7 2.6E-16 8.8E-21 170.8 17.1 248 159-444 54-320 (327)
49 4g1t_A Interferon-induced prot 99.7 5.6E-16 1.9E-20 179.1 20.9 246 174-442 25-279 (472)
50 1qqe_A Vesicular transport pro 99.7 1.6E-15 5.6E-20 167.1 23.6 190 208-444 43-233 (292)
51 4i17_A Hypothetical protein; T 99.7 1.6E-15 5.6E-20 158.9 22.3 181 160-374 7-221 (228)
52 1ouv_A Conserved hypothetical 99.7 2.6E-15 9E-20 161.7 24.2 224 159-442 5-254 (273)
53 2xpi_A Anaphase-promoting comp 99.7 1.5E-15 5E-20 180.6 24.1 251 158-442 303-582 (597)
54 2ifu_A Gamma-SNAP; membrane fu 99.7 2.2E-15 7.6E-20 167.3 23.3 186 162-357 38-223 (307)
55 3gw4_A Uncharacterized protein 99.7 6.2E-15 2.1E-19 149.9 24.5 179 170-361 2-180 (203)
56 3fp2_A TPR repeat-containing p 99.7 3.3E-15 1.1E-19 174.6 24.9 175 158-357 23-305 (537)
57 2qfc_A PLCR protein; TPR, HTH, 99.7 1.9E-15 6.6E-20 166.0 21.6 195 159-361 74-270 (293)
58 2xpi_A Anaphase-promoting comp 99.7 3.7E-15 1.3E-19 177.1 25.0 246 162-441 274-547 (597)
59 2gw1_A Mitochondrial precursor 99.7 6.8E-16 2.3E-20 178.7 17.9 245 157-444 234-483 (514)
60 4abn_A Tetratricopeptide repea 99.7 4.1E-16 1.4E-20 184.6 16.0 170 158-357 100-287 (474)
61 2gw1_A Mitochondrial precursor 99.7 8.4E-15 2.9E-19 169.5 26.4 251 158-442 4-336 (514)
62 2pl2_A Hypothetical conserved 99.7 1E-15 3.4E-20 161.6 16.5 168 155-355 34-212 (217)
63 1fch_A Peroxisomal targeting s 99.6 1.8E-15 6.2E-20 168.0 17.8 241 169-444 34-319 (368)
64 1xnf_A Lipoprotein NLPI; TPR, 99.6 7.9E-15 2.7E-19 155.7 21.5 232 171-442 16-247 (275)
65 3uq3_A Heat shock protein STI1 99.6 2.9E-14 9.8E-19 149.2 24.9 184 160-361 38-240 (258)
66 2q7f_A YRRB protein; TPR, prot 99.6 1.7E-14 5.8E-19 150.2 22.1 180 160-376 57-236 (243)
67 3as5_A MAMA; tetratricopeptide 99.6 1.5E-14 5.3E-19 142.9 19.0 169 158-358 6-174 (186)
68 4abn_A Tetratricopeptide repea 99.6 1.1E-14 3.9E-19 172.2 20.6 194 178-442 79-290 (474)
69 3ro3_A PINS homolog, G-protein 99.6 4.7E-14 1.6E-18 135.8 20.9 157 198-360 5-161 (164)
70 4i17_A Hypothetical protein; T 99.6 1E-13 3.5E-18 145.2 24.5 199 202-443 7-213 (228)
71 3qww_A SET and MYND domain-con 99.6 1.2E-14 4E-19 171.3 18.7 134 160-293 298-431 (433)
72 2h6f_A Protein farnesyltransfe 99.6 4.4E-14 1.5E-18 163.7 21.4 184 155-376 126-318 (382)
73 3gw4_A Uncharacterized protein 99.6 1.1E-13 3.7E-18 140.7 21.8 173 158-337 24-196 (203)
74 3u4t_A TPR repeat-containing p 99.6 2.9E-14 9.9E-19 151.7 18.3 187 160-375 74-263 (272)
75 3qww_A SET and MYND domain-con 99.6 2.6E-14 9E-19 168.3 19.5 124 212-335 308-431 (433)
76 3urz_A Uncharacterized protein 99.6 6.4E-14 2.2E-18 146.7 20.3 165 160-357 4-186 (208)
77 4b4t_Q 26S proteasome regulato 99.6 9.3E-14 3.2E-18 158.6 23.1 236 162-444 6-250 (434)
78 2qfc_A PLCR protein; TPR, HTH, 99.6 5.8E-14 2E-18 154.2 20.6 198 200-444 73-271 (293)
79 3u3w_A Transcriptional activat 99.6 1.8E-13 6.2E-18 150.2 24.5 193 202-444 75-271 (293)
80 3ro3_A PINS homolog, G-protein 99.6 1.5E-13 5.2E-18 132.3 21.0 155 158-318 7-161 (164)
81 3qwp_A SET and MYND domain-con 99.6 1.9E-14 6.5E-19 169.3 17.0 140 160-299 287-426 (429)
82 3qky_A Outer membrane assembly 99.6 1.2E-13 4E-18 148.3 21.7 186 198-443 11-228 (261)
83 2ho1_A Type 4 fimbrial biogene 99.6 2.2E-13 7.5E-18 143.5 22.5 175 160-369 71-245 (252)
84 2yhc_A BAMD, UPF0169 lipoprote 99.6 3.4E-13 1.2E-17 142.5 23.7 177 160-356 4-212 (225)
85 3qwp_A SET and MYND domain-con 99.6 3.6E-14 1.2E-18 166.9 17.3 132 210-341 295-426 (429)
86 2vq2_A PILW, putative fimbrial 99.5 9.5E-13 3.3E-17 134.7 23.6 177 160-371 42-220 (225)
87 3as5_A MAMA; tetratricopeptide 99.5 2.4E-13 8.3E-18 134.3 18.0 173 199-443 5-177 (186)
88 4b4t_Q 26S proteasome regulato 99.5 1.5E-12 5.1E-17 148.6 26.5 202 160-368 55-256 (434)
89 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.7E-12 9.2E-17 136.1 25.8 176 157-357 40-244 (275)
90 4ga2_A E3 SUMO-protein ligase 99.5 2.6E-14 8.9E-19 142.6 9.1 146 166-343 3-149 (150)
91 3mkr_A Coatomer subunit epsilo 99.5 1.2E-12 4.2E-17 145.1 22.9 204 159-443 64-268 (291)
92 2pzi_A Probable serine/threoni 99.5 1.2E-13 4.1E-18 170.9 13.4 162 171-357 402-563 (681)
93 2yhc_A BAMD, UPF0169 lipoprote 99.4 6.4E-12 2.2E-16 132.7 22.9 180 202-441 4-215 (225)
94 1ouv_A Conserved hypothetical 99.4 3.1E-12 1.1E-16 137.6 20.6 192 199-440 3-216 (273)
95 4ga2_A E3 SUMO-protein ligase 99.4 2.7E-13 9.2E-18 135.2 10.8 141 207-376 2-143 (150)
96 2xm6_A Protein corresponding t 99.4 1.4E-11 4.8E-16 145.0 26.9 157 160-356 39-215 (490)
97 3qou_A Protein YBBN; thioredox 99.4 2.4E-12 8.3E-17 141.9 16.9 170 158-357 115-284 (287)
98 3mkr_A Coatomer subunit epsilo 99.4 1.3E-11 4.6E-16 136.7 22.9 174 159-374 100-276 (291)
99 2vsy_A XCC0866; transferase, g 99.4 1.8E-12 6.1E-17 155.8 16.2 153 173-357 2-157 (568)
100 2ond_A Cleavage stimulation fa 99.4 8.6E-12 2.9E-16 138.1 20.4 210 160-444 50-275 (308)
101 2pzi_A Probable serine/threoni 99.4 9.4E-13 3.2E-17 163.0 14.1 172 157-361 430-602 (681)
102 2xm6_A Protein corresponding t 99.4 6.5E-11 2.2E-15 139.4 28.7 158 159-356 74-251 (490)
103 4gco_A Protein STI-1; structur 99.4 3.6E-12 1.2E-16 123.7 14.5 118 197-338 8-125 (126)
104 3urz_A Uncharacterized protein 99.4 2E-11 6.9E-16 127.7 21.2 171 244-443 4-190 (208)
105 4gco_A Protein STI-1; structur 99.4 7E-12 2.4E-16 121.7 16.4 118 155-296 8-125 (126)
106 2r5s_A Uncharacterized protein 99.4 2.1E-12 7.1E-17 131.0 13.1 166 161-357 7-173 (176)
107 3rjv_A Putative SEL1 repeat pr 99.4 1.3E-11 4.3E-16 130.0 17.7 163 159-357 17-197 (212)
108 1p5q_A FKBP52, FK506-binding p 99.3 1.3E-12 4.5E-17 147.8 10.1 162 173-358 126-295 (336)
109 3rjv_A Putative SEL1 repeat pr 99.3 1.8E-11 6.2E-16 128.8 17.3 178 177-440 3-198 (212)
110 4gcn_A Protein STI-1; structur 99.3 2.2E-11 7.5E-16 118.1 15.8 109 199-316 5-113 (127)
111 2fo7_A Synthetic consensus TPR 99.3 4.6E-11 1.6E-15 111.1 17.2 132 161-316 2-133 (136)
112 4gcn_A Protein STI-1; structur 99.3 5.4E-11 1.9E-15 115.3 17.9 108 241-357 5-112 (127)
113 2fo7_A Synthetic consensus TPR 99.3 3.6E-11 1.2E-15 111.8 15.9 131 203-357 2-132 (136)
114 1a17_A Serine/threonine protei 99.3 6.8E-11 2.3E-15 115.7 18.1 139 158-318 11-149 (166)
115 1a17_A Serine/threonine protei 99.3 1E-10 3.6E-15 114.4 18.7 139 200-360 11-149 (166)
116 3gyz_A Chaperone protein IPGC; 99.3 8.6E-12 2.9E-16 126.0 10.5 104 197-316 31-134 (151)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.3 4.1E-11 1.4E-15 123.3 15.4 140 158-316 4-151 (213)
118 2ond_A Cleavage stimulation fa 99.3 5.6E-11 1.9E-15 131.5 17.2 184 177-439 33-232 (308)
119 2vsy_A XCC0866; transferase, g 99.2 4.3E-11 1.5E-15 143.7 15.9 157 215-443 2-161 (568)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.2 4.6E-11 1.6E-15 122.9 13.9 137 202-357 6-150 (213)
121 3qou_A Protein YBBN; thioredox 99.2 5.7E-11 2E-15 130.9 15.5 171 199-439 114-284 (287)
122 2vgx_A Chaperone SYCD; alterna 99.2 5.8E-11 2E-15 118.3 13.9 103 198-316 17-119 (148)
123 1p5q_A FKBP52, FK506-binding p 99.2 1.1E-10 3.9E-15 131.9 18.0 145 156-316 143-295 (336)
124 3upv_A Heat shock protein STI1 99.2 2.8E-10 9.5E-15 108.1 17.0 122 200-339 2-123 (126)
125 3upv_A Heat shock protein STI1 99.2 3.5E-10 1.2E-14 107.4 17.1 123 158-298 2-124 (126)
126 3gyz_A Chaperone protein IPGC; 99.2 3.2E-10 1.1E-14 114.4 17.7 107 151-273 27-133 (151)
127 3dra_A Protein farnesyltransfe 99.2 1.6E-09 5.4E-14 122.1 24.5 240 158-439 30-287 (306)
128 2vyi_A SGTA protein; chaperone 99.2 3.8E-10 1.3E-14 104.9 15.2 125 197-345 7-131 (131)
129 2r5s_A Uncharacterized protein 99.2 4.1E-11 1.4E-15 121.5 9.0 166 203-439 7-173 (176)
130 2lni_A Stress-induced-phosphop 99.2 2.3E-10 7.9E-15 107.5 13.3 123 197-343 11-133 (133)
131 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 2.1E-11 7.2E-16 143.8 7.6 154 173-350 247-407 (457)
132 1wao_1 Serine/threonine protei 99.2 1.1E-11 3.7E-16 147.3 5.0 178 159-360 5-200 (477)
133 2vyi_A SGTA protein; chaperone 99.2 6.5E-10 2.2E-14 103.3 16.1 122 157-302 9-130 (131)
134 2lni_A Stress-induced-phosphop 99.2 4.6E-10 1.6E-14 105.4 14.7 122 156-301 12-133 (133)
135 4f3v_A ESX-1 secretion system 99.1 2.4E-10 8.3E-15 127.2 14.5 214 160-442 7-240 (282)
136 2fbn_A 70 kDa peptidylprolyl i 99.1 4.8E-11 1.6E-15 122.9 8.2 153 170-348 14-176 (198)
137 2e2e_A Formate-dependent nitri 99.1 1.6E-10 5.3E-15 116.3 11.4 123 170-316 20-145 (177)
138 3sz7_A HSC70 cochaperone (SGT) 99.1 4.2E-10 1.4E-14 112.3 14.5 104 197-316 6-109 (164)
139 1xi4_A Clathrin heavy chain; a 99.1 7.9E-09 2.7E-13 133.6 29.5 224 166-442 1055-1312(1630)
140 2vgx_A Chaperone SYCD; alterna 99.1 1.6E-09 5.3E-14 107.9 17.6 105 154-274 15-119 (148)
141 3sz7_A HSC70 cochaperone (SGT) 99.1 5.9E-10 2E-14 111.2 14.6 103 156-274 7-109 (164)
142 3rkv_A Putative peptidylprolyl 99.1 7E-10 2.4E-14 110.4 15.0 108 158-273 9-126 (162)
143 2xcb_A PCRH, regulatory protei 99.1 3.3E-10 1.1E-14 110.9 12.1 103 198-316 14-116 (142)
144 3rkv_A Putative peptidylprolyl 99.1 5.4E-10 1.8E-14 111.3 13.8 110 199-316 8-127 (162)
145 2ooe_A Cleavage stimulation fa 99.1 1.7E-09 5.8E-14 128.6 19.7 211 160-444 272-497 (530)
146 2fbn_A 70 kDa peptidylprolyl i 99.1 6.3E-10 2.2E-14 114.5 13.9 131 158-306 36-176 (198)
147 2c2l_A CHIP, carboxy terminus 99.1 2.6E-10 9E-15 125.4 11.6 101 160-276 4-104 (281)
148 3e4b_A ALGK; tetratricopeptide 99.1 1E-09 3.5E-14 129.0 16.6 222 160-439 141-387 (452)
149 1na0_A Designed protein CTPR3; 99.1 2.1E-09 7.3E-14 98.9 15.1 118 201-342 8-125 (125)
150 3q49_B STIP1 homology and U bo 99.1 1.8E-09 6E-14 103.0 14.9 105 198-318 5-109 (137)
151 3e4b_A ALGK; tetratricopeptide 99.1 1.6E-10 5.4E-15 135.9 9.1 28 288-315 178-208 (452)
152 2hr2_A Hypothetical protein; a 99.1 1.7E-09 5.8E-14 110.7 15.2 117 201-318 10-134 (159)
153 2e2e_A Formate-dependent nitri 99.1 4.5E-10 1.5E-14 112.9 10.7 122 212-357 20-144 (177)
154 2xcb_A PCRH, regulatory protei 99.1 3.2E-09 1.1E-13 103.8 16.3 105 154-274 12-116 (142)
155 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 1.1E-09 3.6E-14 129.3 15.3 136 157-308 265-407 (457)
156 1na0_A Designed protein CTPR3; 99.0 5.1E-09 1.7E-13 96.4 16.6 117 160-300 9-125 (125)
157 2hr2_A Hypothetical protein; a 99.0 2.7E-09 9.4E-14 109.1 15.8 117 159-276 10-134 (159)
158 1elr_A TPR2A-domain of HOP; HO 99.0 3.6E-09 1.2E-13 98.5 15.1 124 200-341 2-125 (131)
159 3q49_B STIP1 homology and U bo 99.0 3.4E-09 1.2E-13 101.1 14.3 102 159-276 8-109 (137)
160 2c2l_A CHIP, carboxy terminus 99.0 1E-09 3.5E-14 120.6 12.1 102 201-318 3-104 (281)
161 2xev_A YBGF; tetratricopeptide 99.0 7.6E-09 2.6E-13 97.6 16.5 103 204-316 4-106 (129)
162 1wao_1 Serine/threonine protei 99.0 3E-11 1E-15 143.5 -0.3 130 199-352 3-134 (477)
163 2xev_A YBGF; tetratricopeptide 99.0 5.7E-09 2E-13 98.4 15.5 119 246-379 4-122 (129)
164 1xi4_A Clathrin heavy chain; a 99.0 1.5E-08 5.3E-13 131.0 24.1 239 158-435 1103-1380(1630)
165 1ihg_A Cyclophilin 40; ppiase 99.0 2.9E-09 9.9E-14 122.5 15.8 136 157-308 220-363 (370)
166 1elw_A TPR1-domain of HOP; HOP 99.0 8.2E-09 2.8E-13 94.2 15.4 114 159-296 3-116 (118)
167 1ihg_A Cyclophilin 40; ppiase 99.0 2.3E-09 7.8E-14 123.4 14.3 133 201-349 222-362 (370)
168 1elr_A TPR2A-domain of HOP; HO 99.0 7.5E-09 2.6E-13 96.3 15.2 106 159-273 3-108 (131)
169 1elw_A TPR1-domain of HOP; HOP 99.0 6.6E-09 2.3E-13 94.8 13.8 114 201-338 3-116 (118)
170 2if4_A ATFKBP42; FKBP-like, al 98.9 1.3E-09 4.5E-14 123.4 9.3 142 200-357 177-328 (338)
171 2ooe_A Cleavage stimulation fa 98.9 2.4E-08 8.3E-13 118.6 20.5 186 177-440 255-455 (530)
172 3q7a_A Farnesyltransferase alp 98.9 4.1E-08 1.4E-12 112.4 21.5 244 162-442 55-334 (349)
173 2if4_A ATFKBP42; FKBP-like, al 98.9 1.5E-09 5E-14 122.9 9.4 144 157-316 176-329 (338)
174 1hxi_A PEX5, peroxisome target 98.9 5.8E-09 2E-13 100.2 11.8 95 163-273 20-114 (121)
175 2dba_A Smooth muscle cell asso 98.9 1E-08 3.5E-13 98.1 13.3 103 158-273 26-128 (148)
176 2dba_A Smooth muscle cell asso 98.9 7.3E-09 2.5E-13 99.2 12.2 106 198-316 24-129 (148)
177 1hxi_A PEX5, peroxisome target 98.9 7.3E-09 2.5E-13 99.5 10.9 98 203-316 18-115 (121)
178 1b89_A Protein (clathrin heavy 98.9 1.4E-09 4.7E-14 127.8 6.4 207 161-442 33-239 (449)
179 2kck_A TPR repeat; tetratricop 98.8 5.1E-09 1.7E-13 94.9 8.2 101 199-315 3-106 (112)
180 4f3v_A ESX-1 secretion system 98.8 1.1E-08 3.8E-13 113.8 10.2 182 154-357 34-237 (282)
181 3k9i_A BH0479 protein; putativ 98.7 1.8E-08 6.1E-13 95.1 8.4 90 214-316 2-91 (117)
182 3k9i_A BH0479 protein; putativ 98.7 1.8E-08 6.2E-13 95.1 8.2 89 172-273 2-90 (117)
183 2kck_A TPR repeat; tetratricop 98.7 2.9E-08 9.8E-13 89.9 8.9 97 161-273 7-106 (112)
184 1dce_A Protein (RAB geranylger 98.7 1.8E-07 6.1E-12 113.8 17.6 173 167-376 35-235 (567)
185 3dss_A Geranylgeranyl transfer 98.6 3.5E-06 1.2E-10 95.9 25.3 173 168-377 37-237 (331)
186 3mv2_B Coatomer subunit epsilo 98.6 1.3E-06 4.3E-11 98.5 19.9 187 162-374 102-294 (310)
187 2l6j_A TPR repeat-containing p 98.6 3.1E-08 1.1E-12 90.6 4.6 97 201-310 3-102 (111)
188 1b89_A Protein (clathrin heavy 98.6 1.6E-07 5.5E-12 110.3 11.0 223 162-436 63-308 (449)
189 2l6j_A TPR repeat-containing p 98.5 4.9E-08 1.7E-12 89.3 4.7 101 159-269 3-103 (111)
190 1na3_A Designed protein CTPR2; 98.5 6.4E-07 2.2E-11 78.9 11.5 86 199-300 6-91 (91)
191 3dra_A Protein farnesyltransfe 98.5 1.1E-06 3.8E-11 98.9 16.0 167 157-355 64-248 (306)
192 1dce_A Protein (RAB geranylger 98.5 7E-07 2.4E-11 108.5 14.1 158 157-346 60-244 (567)
193 1zu2_A Mitochondrial import re 98.5 2.6E-07 8.7E-12 94.4 8.5 86 172-273 14-120 (158)
194 3dss_A Geranylgeranyl transfer 98.5 1E-05 3.5E-10 92.0 22.5 150 176-357 90-267 (331)
195 1na3_A Designed protein CTPR2; 98.4 2.3E-06 7.7E-11 75.3 12.5 85 158-258 7-91 (91)
196 1klx_A Cysteine rich protein B 98.4 1.5E-06 5.2E-11 85.4 12.6 110 174-315 9-126 (138)
197 2kat_A Uncharacterized protein 98.4 1.4E-06 4.6E-11 81.4 11.5 83 178-276 3-85 (115)
198 1zu2_A Mitochondrial import re 98.4 6.1E-07 2.1E-11 91.7 9.2 98 255-373 13-131 (158)
199 2kat_A Uncharacterized protein 98.4 1.5E-06 5.2E-11 81.0 11.0 83 220-318 3-85 (115)
200 1klx_A Cysteine rich protein B 98.3 2.6E-06 8.8E-11 83.8 11.6 110 216-357 9-126 (138)
201 3ma5_A Tetratricopeptide repea 98.3 4.7E-06 1.6E-10 76.8 11.2 71 198-276 3-73 (100)
202 3ma5_A Tetratricopeptide repea 98.3 3.8E-06 1.3E-10 77.4 10.2 71 240-318 3-73 (100)
203 3mv2_B Coatomer subunit epsilo 98.2 9.7E-06 3.3E-10 91.4 15.4 132 203-357 101-240 (310)
204 4e6h_A MRNA 3'-END-processing 98.1 0.00018 6.1E-09 89.3 24.0 232 177-442 326-573 (679)
205 2kc7_A BFR218_protein; tetratr 98.1 5.8E-06 2E-10 74.6 8.0 87 163-273 3-90 (99)
206 2kc7_A BFR218_protein; tetratr 98.1 6.3E-06 2.2E-10 74.4 7.5 87 206-316 4-91 (99)
207 3ly7_A Transcriptional activat 98.0 6.4E-05 2.2E-09 86.4 15.1 140 158-316 194-340 (372)
208 3q7a_A Farnesyltransferase alp 97.9 8.7E-05 3E-09 85.0 15.1 154 159-344 87-258 (349)
209 3txn_A 26S proteasome regulato 97.8 0.0028 9.7E-08 73.6 25.5 203 161-376 20-226 (394)
210 2v5f_A Prolyl 4-hydroxylase su 97.8 0.00017 5.9E-09 67.3 12.4 83 160-251 5-87 (104)
211 4e6h_A MRNA 3'-END-processing 97.8 0.00029 9.8E-09 87.5 18.0 175 160-357 343-533 (679)
212 2v5f_A Prolyl 4-hydroxylase su 97.8 0.00035 1.2E-08 65.2 13.5 85 286-376 5-89 (104)
213 3ly7_A Transcriptional activat 97.6 0.00056 1.9E-08 78.7 14.2 135 204-357 198-339 (372)
214 3u64_A Protein TP_0956; tetrat 97.4 0.0017 5.8E-08 72.3 15.3 107 196-316 146-270 (301)
215 4g26_A Pentatricopeptide repea 97.4 0.0063 2.2E-07 72.7 20.5 161 167-355 33-202 (501)
216 3txn_A 26S proteasome regulato 97.4 0.016 5.3E-07 67.4 23.1 156 203-369 20-178 (394)
217 3bee_A Putative YFRE protein; 97.2 0.0018 6E-08 59.9 10.5 83 199-294 3-88 (93)
218 3u64_A Protein TP_0956; tetrat 97.2 0.008 2.8E-07 67.0 17.2 103 240-357 148-269 (301)
219 3ffl_A Anaphase-promoting comp 97.2 0.0048 1.6E-07 63.2 14.1 109 161-269 21-147 (167)
220 3bee_A Putative YFRE protein; 97.0 0.0024 8.1E-08 59.0 9.2 68 241-316 3-73 (93)
221 1pc2_A Mitochondria fission pr 96.9 0.014 4.7E-07 59.1 14.5 82 177-273 15-100 (152)
222 1pc2_A Mitochondria fission pr 96.9 0.012 4.2E-07 59.5 13.7 96 261-376 15-114 (152)
223 3ffl_A Anaphase-promoting comp 96.8 0.013 4.4E-07 60.1 13.1 110 243-352 19-146 (167)
224 4b4t_P 26S proteasome regulato 96.5 0.24 8.4E-06 58.2 23.4 115 243-361 136-251 (445)
225 4g26_A Pentatricopeptide repea 96.4 0.1 3.4E-06 62.3 19.8 131 204-355 28-167 (501)
226 2uy1_A Cleavage stimulation fa 95.4 0.78 2.7E-05 54.4 21.5 214 177-441 196-415 (493)
227 4b4t_R RPN7, 26S proteasome re 95.4 0.43 1.5E-05 55.7 18.6 126 223-357 111-237 (429)
228 4b4t_R RPN7, 26S proteasome re 95.2 0.26 9E-06 57.5 16.1 111 199-316 128-238 (429)
229 3lpz_A GET4 (YOR164C homolog); 95.1 6 0.0002 44.9 27.8 187 166-358 18-217 (336)
230 2uy1_A Cleavage stimulation fa 95.0 0.51 1.7E-05 56.0 18.1 162 160-354 213-380 (493)
231 1nzn_A CGI-135 protein, fissio 94.6 0.95 3.2E-05 44.3 15.7 86 176-273 17-103 (126)
232 4b4t_P 26S proteasome regulato 94.4 0.86 2.9E-05 53.5 17.7 114 158-276 135-250 (445)
233 1nzn_A CGI-135 protein, fissio 94.1 0.91 3.1E-05 44.5 14.2 100 260-376 17-117 (126)
234 4h7y_A Dual specificity protei 93.9 0.32 1.1E-05 49.2 10.7 106 202-316 13-124 (161)
235 3mkq_A Coatomer beta'-subunit; 93.7 0.66 2.2E-05 56.9 15.7 27 202-228 681-707 (814)
236 2ff4_A Probable regulatory pro 93.6 0.95 3.2E-05 52.1 15.7 115 159-281 114-242 (388)
237 2wpv_A GET4, UPF0363 protein Y 93.5 12 0.0004 42.0 23.9 185 168-358 21-218 (312)
238 3mkq_A Coatomer beta'-subunit; 93.3 0.53 1.8E-05 57.7 13.8 28 244-271 681-708 (814)
239 4h7y_A Dual specificity protei 92.1 0.53 1.8E-05 47.6 9.2 104 245-357 14-123 (161)
240 4gns_B Protein CSD3, chitin bi 91.6 1.6 5.5E-05 54.6 15.0 123 173-312 261-397 (754)
241 1o9d_A 14-3-3-like protein C; 91.6 5.8 0.0002 43.4 17.6 56 261-316 152-208 (260)
242 4fhn_B Nucleoporin NUP120; pro 91.1 6.1 0.00021 51.8 20.5 103 204-310 844-962 (1139)
243 3kae_A CDC27, possible protein 91.0 3.1 0.00011 42.8 13.5 99 205-316 36-144 (242)
244 1ya0_A SMG-7 transcript varian 90.9 0.74 2.5E-05 55.0 10.5 64 202-273 152-215 (497)
245 3ubw_A 14-3-3E, 14-3-3 protein 90.8 7.2 0.00024 42.6 17.2 156 160-316 31-229 (261)
246 3lpz_A GET4 (YOR164C homolog); 90.8 26 0.00088 39.7 24.9 153 160-316 55-217 (336)
247 4gns_B Protein CSD3, chitin bi 90.6 1.5 5.1E-05 54.9 13.3 121 215-352 261-395 (754)
248 4b4t_S RPN3, 26S proteasome re 90.5 0.27 9.3E-06 58.8 6.3 145 169-316 145-300 (523)
249 1y8m_A FIS1; mitochondria, unk 90.4 1.6 5.6E-05 43.6 10.7 89 136-231 15-106 (144)
250 2npm_A 14-3-3 domain containin 90.2 7.7 0.00026 42.4 16.9 56 261-317 173-229 (260)
251 2ff4_A Probable regulatory pro 90.1 1.9 6.5E-05 49.6 12.8 72 245-324 172-243 (388)
252 3uzd_A 14-3-3 protein gamma; s 89.9 25 0.00084 38.2 21.8 185 161-361 5-207 (248)
253 3o48_A Mitochondria fission 1 89.9 2.4 8.2E-05 41.9 11.3 80 285-376 39-121 (134)
254 3kae_A CDC27, possible protein 89.7 3.3 0.00011 42.6 12.4 98 247-357 36-143 (242)
255 3o48_A Mitochondria fission 1 89.6 1.7 5.9E-05 42.9 10.1 91 134-231 14-107 (134)
256 1ya0_A SMG-7 transcript varian 88.9 1.1 3.9E-05 53.4 10.0 63 245-315 153-215 (497)
257 1y8m_A FIS1; mitochondria, unk 88.5 2.6 8.9E-05 42.1 10.6 81 284-376 37-120 (144)
258 2wpv_A GET4, UPF0363 protein Y 87.4 25 0.00086 39.4 19.1 153 160-316 53-218 (312)
259 4b4t_O 26S proteasome regulato 87.0 16 0.00055 42.0 17.8 108 209-316 83-199 (393)
260 3mkq_B Coatomer subunit alpha; 86.5 4.6 0.00016 41.7 11.4 102 169-312 14-115 (177)
261 4b4t_S RPN3, 26S proteasome re 85.9 1.1 3.9E-05 53.5 7.5 140 212-357 146-299 (523)
262 2br9_A 14-3-3E, 14-3-3 protein 85.9 41 0.0014 36.1 23.0 187 161-363 6-208 (234)
263 3spa_A Mtrpol, DNA-directed RN 85.3 5.3 0.00018 51.5 13.4 106 198-314 123-229 (1134)
264 3spa_A Mtrpol, DNA-directed RN 85.0 5.2 0.00018 51.6 13.1 106 240-356 123-229 (1134)
265 1o9d_A 14-3-3-like protein C; 84.1 8.9 0.00031 41.9 12.9 58 303-360 152-210 (260)
266 3ubw_A 14-3-3E, 14-3-3 protein 83.2 22 0.00076 38.8 15.5 59 303-361 173-232 (261)
267 4b4t_O 26S proteasome regulato 82.8 6.9 0.00024 45.1 12.2 133 220-357 57-198 (393)
268 2o8p_A 14-3-3 domain containin 82.1 58 0.002 34.9 22.1 179 165-358 11-198 (227)
269 3iqu_A 14-3-3 protein sigma; s 81.8 61 0.0021 34.9 24.5 187 161-363 9-211 (236)
270 3mkq_B Coatomer subunit alpha; 81.6 8.7 0.0003 39.7 11.0 100 213-354 16-115 (177)
271 4fhn_B Nucleoporin NUP120; pro 81.4 11 0.00038 49.3 14.8 102 163-268 845-962 (1139)
272 2npm_A 14-3-3 domain containin 81.3 23 0.00078 38.7 14.8 58 303-361 173-231 (260)
273 2o8p_A 14-3-3 domain containin 77.2 18 0.00062 38.7 12.1 69 204-274 129-198 (227)
274 3uzd_A 14-3-3 protein gamma; s 76.7 25 0.00087 38.1 13.2 56 261-316 148-204 (248)
275 2br9_A 14-3-3E, 14-3-3 protein 76.4 21 0.00073 38.3 12.5 59 260-318 146-205 (234)
276 3re2_A Predicted protein; meni 74.6 34 0.0012 39.0 13.7 95 220-319 233-329 (472)
277 2r17_C Vacuolar protein sortin 73.9 1.2E+02 0.004 33.8 18.3 148 208-360 105-270 (298)
278 3re2_A Predicted protein; meni 72.4 30 0.001 39.4 12.6 73 201-276 254-328 (472)
279 3u84_A Menin; MLL, JUND, ledgf 70.6 44 0.0015 38.7 13.6 93 222-319 257-351 (550)
280 3iqu_A 14-3-3 protein sigma; s 70.2 90 0.0031 33.6 15.4 57 260-316 149-206 (236)
281 4gq4_A Menin; tumor suppressor 69.3 60 0.0021 37.7 14.3 97 218-319 238-336 (489)
282 3u84_A Menin; MLL, JUND, ledgf 69.1 37 0.0013 39.3 12.5 73 201-276 276-350 (550)
283 4gq4_A Menin; tumor suppressor 67.6 58 0.002 37.8 13.8 73 201-276 261-335 (489)
284 1zb1_A BRO1 protein; AIP1, BRO 63.5 42 0.0014 38.5 12.2 58 304-361 217-290 (392)
285 1jgn_B PAIP2, polyadenylate-bi 63.5 2.9 0.0001 28.8 1.4 16 956-971 4-19 (26)
286 3rau_A Tyrosine-protein phosph 61.5 2.2E+02 0.0074 32.3 18.6 36 326-361 250-285 (363)
287 1zbp_A Hypothetical protein VP 61.2 52 0.0018 36.2 11.6 129 296-445 7-135 (273)
288 3t5v_B Nuclear mRNA export pro 60.9 2.5E+02 0.0087 32.9 18.8 70 205-275 179-252 (455)
289 3efz_A 14-3-3 protein; 14-3-3, 60.8 45 0.0015 36.5 11.0 56 260-315 168-226 (268)
290 3efz_A 14-3-3 protein; 14-3-3, 60.0 41 0.0014 36.8 10.5 94 180-273 118-226 (268)
291 4ady_A RPN2, 26S proteasome re 59.7 2E+02 0.0069 36.9 18.2 150 199-355 67-257 (963)
292 4a5x_A MITD1, MIT domain-conta 55.1 40 0.0014 30.5 8.0 43 152-194 8-50 (86)
293 3r9m_A BRO1 domain-containing 52.3 2.1E+02 0.0073 32.4 15.5 33 327-359 252-284 (376)
294 4ady_A RPN2, 26S proteasome re 51.8 2E+02 0.0069 36.9 16.3 175 157-355 410-587 (963)
295 4gq2_M Nucleoporin NUP120; bet 51.6 49 0.0017 42.4 11.1 71 203-273 841-926 (950)
296 1zbp_A Hypothetical protein VP 51.2 1.4E+02 0.0048 32.8 12.9 120 169-316 6-130 (273)
297 3esl_A Checkpoint serine/threo 50.0 2.5E+02 0.0085 29.5 14.4 86 265-357 58-144 (202)
298 1qsa_A Protein (soluble lytic 48.4 1.8E+02 0.0063 35.4 14.9 132 162-314 216-347 (618)
299 3c3r_A Programmed cell death 6 47.8 1.5E+02 0.005 33.9 13.2 33 327-359 274-306 (380)
300 2qx5_A Nucleoporin NIC96; mRNA 46.2 3.7E+02 0.013 33.0 17.1 214 168-435 302-563 (661)
301 2cpt_A SKD1 protein, vacuolar 45.9 64 0.0022 30.9 8.3 36 159-194 17-52 (117)
302 1zb1_A BRO1 protein; AIP1, BRO 41.1 1.7E+02 0.0058 33.4 12.4 30 288-317 259-288 (392)
303 2xs1_A Programmed cell death 6 40.8 1.2E+02 0.004 37.7 11.7 34 327-360 259-292 (704)
304 2w2u_A Hypothetical P60 katani 39.5 47 0.0016 29.9 5.8 35 159-193 18-52 (83)
305 4gq2_M Nucleoporin NUP120; bet 38.6 1.6E+02 0.0056 37.6 12.9 71 246-316 842-927 (950)
306 2v6y_A AAA family ATPase, P60 38.5 50 0.0017 29.6 5.8 35 159-193 10-44 (83)
307 2vkj_A TM1634; membrane protei 38.4 1E+02 0.0035 28.3 7.6 48 158-211 51-99 (106)
308 2r17_C Vacuolar protein sortin 36.6 4.8E+02 0.016 28.9 17.8 153 161-318 100-270 (298)
309 1qsa_A Protein (soluble lytic 35.6 1.9E+02 0.0066 35.2 12.3 128 207-355 219-346 (618)
310 2crb_A Nuclear receptor bindin 34.8 2.6E+02 0.009 25.9 9.8 49 325-373 12-61 (97)
311 2cpt_A SKD1 protein, vacuolar 34.7 2.5E+02 0.0084 26.8 10.4 35 337-371 27-63 (117)
312 3rau_A Tyrosine-protein phosph 33.9 4E+02 0.014 30.1 13.9 40 153-192 110-158 (363)
313 3r9m_A BRO1 domain-containing 33.2 5.8E+02 0.02 28.8 15.6 34 34-67 38-72 (376)
314 1wfd_A Hypothetical protein 15 33.0 1.9E+02 0.0066 26.3 9.0 32 289-320 18-49 (93)
315 2wb7_A PT26-6P; extra chromoso 32.9 2E+02 0.0069 34.1 11.0 49 261-315 449-497 (526)
316 2crb_A Nuclear receptor bindin 31.5 73 0.0025 29.5 5.6 36 242-277 13-48 (97)
317 1wfd_A Hypothetical protein 15 30.8 1.4E+02 0.0048 27.2 7.7 36 159-194 14-49 (93)
318 2wb7_A PT26-6P; extra chromoso 30.6 2.4E+02 0.0083 33.4 11.2 69 219-316 449-517 (526)
319 4a5x_A MITD1, MIT domain-conta 30.1 3E+02 0.01 24.7 10.1 40 331-370 19-59 (86)
320 2w2u_A Hypothetical P60 katani 30.0 80 0.0027 28.4 5.7 30 290-319 23-52 (83)
321 2v6x_A Vacuolar protein sortin 29.7 1.2E+02 0.0042 26.9 7.0 36 158-193 11-46 (85)
322 2v6y_A AAA family ATPase, P60 28.8 86 0.0029 28.1 5.7 29 291-319 16-44 (83)
323 4aez_C MAD3, mitotic spindle c 28.7 1.9E+02 0.0064 30.8 9.2 82 264-357 97-179 (223)
324 2rpa_A Katanin P60 ATPase-cont 28.7 68 0.0023 28.7 4.9 34 160-193 12-45 (78)
325 3t5v_B Nuclear mRNA export pro 28.1 1.3E+02 0.0046 35.3 8.7 72 245-317 177-252 (455)
326 2wm9_A Dedicator of cytokinesi 27.4 3.2E+02 0.011 31.6 11.8 30 244-273 11-40 (428)
327 2rpa_A Katanin P60 ATPase-cont 27.2 1.5E+02 0.0052 26.4 6.9 34 331-364 15-48 (78)
328 3esl_A Checkpoint serine/threo 26.8 5.7E+02 0.019 26.7 14.4 86 181-273 58-144 (202)
329 3c3r_A Programmed cell death 6 26.7 5.8E+02 0.02 28.8 13.7 37 155-191 137-182 (380)
330 1rmg_A Rgase A, rhamnogalactur 25.6 40 0.0014 39.2 3.7 55 903-977 363-417 (422)
331 2v6x_A Vacuolar protein sortin 25.5 3.2E+02 0.011 24.1 9.0 31 289-319 16-46 (85)
332 3myv_A SUSD superfamily protei 24.6 85 0.0029 36.5 6.3 34 198-231 186-219 (454)
333 4aez_C MAD3, mitotic spindle c 24.3 4.9E+02 0.017 27.6 11.4 35 408-442 148-182 (223)
334 3t5x_A PCI domain-containing p 23.7 1.1E+02 0.0038 31.8 6.3 61 156-219 10-70 (203)
335 3kez_A Putative sugar binding 22.4 94 0.0032 36.2 6.1 34 198-231 192-225 (461)
336 2xs1_A Programmed cell death 6 21.5 4.9E+02 0.017 32.1 12.5 32 286-317 260-291 (704)
337 2wm9_A Dedicator of cytokinesi 20.9 3.7E+02 0.013 31.1 10.6 30 202-231 11-40 (428)
338 2wvi_A Mitotic checkpoint seri 20.6 1.8E+02 0.006 29.5 6.8 81 264-356 43-124 (164)
339 1olg_A Tumor suppressor P53 (o 20.4 38 0.0013 26.9 1.4 14 1090-1104 6-19 (42)
No 1
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=3e-23 Score=223.79 Aligned_cols=287 Identities=22% Similarity=0.223 Sum_probs=230.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
....+..++.+|..++..|++++|+.+|++++++.....+.+++..+.++..+|.+|...|++++|+.++++++.+.++.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 45668889999999999999999999999999999988777889999999999999999999999999999999999998
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 236 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
.+.+++....++.++|.+|..+|++++|+.+|++++.+.+...+.+++....++.++|.+|...|++++|+.+|++++++
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 001110 316 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK-LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT 394 (1155)
Q Consensus 316 ~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~-lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~ 394 (1155)
.++..+.+++....++..+|.+|..+|++++|+.++++++++.... ++..+.........+..+...............
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 9988888889999999999999999999999999999999886552 122222211111111111111111100000000
Q ss_pred CCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 395 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 395 ~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
...........++....++..+|.+|..+|++++|+.+|++++++.++
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 000111112234567889999999999999999999999999998754
No 2
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.92 E-value=1.3e-23 Score=222.67 Aligned_cols=268 Identities=21% Similarity=0.195 Sum_probs=218.8
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 001110 171 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 250 (1155)
Q Consensus 171 l~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nL 250 (1155)
...|++++|+.+|++|++++.+..+.+++..+.++..+|.+|..+|++++|+.+|++++.+.++..|.+++....++.++
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45799999999999999999999888889999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 001110 251 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 330 (1155)
Q Consensus 251 A~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a 330 (1155)
|.+|..+|++++|+.+|++++.+.+...+.+++....++.++|.+|..+|++++|+.+|++++++.+...+.+++....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHh--HHHHHHHHhcCCCCchhhhhcCCC
Q 001110 331 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKL-GPDDLRTQDAAAWLEYFESKA--FEQQEAARNGTRKPDASIASKGHL 407 (1155)
Q Consensus 331 ~~nLA~iy~~lGdyeeAle~lkkALeI~kk~l-G~dh~~t~~al~~La~l~qk~--~e~AeAi~~~~~~~~~~~a~~~~~ 407 (1155)
+.++|.+|..+|++++|+.++++++.+..... +..+.........+....... ......+... ..........++
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY--GSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH--HHHHHhcCCCCH
Confidence 99999999999999999999999999876532 222222111222121111100 0000000000 000011122345
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001110 408 SVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 440 (1155)
Q Consensus 408 svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~ 440 (1155)
....++..+|.+|..+|++++|+.+|++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 677899999999999999999999999999864
No 3
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.89 E-value=1.8e-21 Score=221.01 Aligned_cols=266 Identities=11% Similarity=0.025 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..++.+|..++..|+|++|+.+|++|+.+.... .+.+..+.+++.+|.+|..+|++++|+.++++|+.++++. +...
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~ 180 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYN 180 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccch
Confidence 345668999999999999999999999987665 4556788999999999999999999999999999998874 2235
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
+..+.++.++|.+|..+|++++|+++|++|+.+.... .+.+..+.++.++|.+|..+|++++|+.+|++|+++.+..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~- 257 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES- 257 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-
Confidence 6788999999999999999999999999999998875 4567788899999999999999999999999999998765
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-----HHHHHHHHhcCC
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA-----FEQQEAARNGTR 395 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~-----~e~AeAi~~~~~ 395 (1155)
.+.+..+.++.++|.+|..+|++++|+.++++++++..+... +........++.+.... .+.+..+....
T Consensus 258 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~- 332 (383)
T 3ulq_A 258 -NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD---VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK- 332 (383)
T ss_dssp -TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-
T ss_pred -ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-
Confidence 233667899999999999999999999999999999877532 22222233344333222 22222222211
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhcC
Q 001110 396 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 445 (1155)
Q Consensus 396 ~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~~ 445 (1155)
.......+++..+|.+|..+|++++|+.+|++++++..++..
T Consensus 333 --------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 333 --------MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred --------cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 122356778999999999999999999999999999999874
No 4
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=4.5e-21 Score=217.27 Aligned_cols=276 Identities=13% Similarity=0.084 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|.+++..|++++|+.+|++++++.... .+++..+.++..+|.+|..+|++++|+.+|++++.+..+. .
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 160 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--G 160 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--h
Confidence 35778899999999999999999999999998776 4567889999999999999999999999999999998875 4
Q ss_pred CChhhHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 001110 239 DHPDTMKSYGDLAVFYYRLQH-----------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 301 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~-----------------yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~ 301 (1155)
+.+....++.++|.+|..+|+ +++|+++|++++.+.... .+++..+.++.++|.+|..+|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCC
Confidence 567888999999999999999 999999999999998775 3457788899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 001110 302 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 381 (1155)
Q Consensus 302 ~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~q 381 (1155)
+++|+.+|++++++.... .+....+.++.++|.+|..+|++++|+.+|++++.+.... .++.....++..++.+..
T Consensus 239 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHH
Confidence 999999999999998775 3556677899999999999999999999999999998765 333444555555655444
Q ss_pred HhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 382 KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 382 k~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
...+..++......................++..+|.+|..+|++++|+.+|++++++..++.
T Consensus 315 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 433333333222221111111222335677899999999999999999999999999998877
No 5
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=1.2e-20 Score=211.23 Aligned_cols=276 Identities=13% Similarity=0.088 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|.+++..|++++|+.+|++++.+.... .+.+..+.++..+|.+|..+|++++|+.++++++.+.... .
T Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~ 121 (406)
T 3sf4_A 46 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--N 121 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--c
Confidence 36788999999999999999999999999998776 4567788999999999999999999999999999998875 3
Q ss_pred CChhhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 298 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~--------------------yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~ 298 (1155)
+....+.++.++|.+|..+|+ +++|+.+|++++.+.... .+++..+.++.++|.+|..
T Consensus 122 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHH
Confidence 456678899999999999999 999999999999998875 3567788999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 001110 299 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 378 (1155)
Q Consensus 299 lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~ 378 (1155)
+|++++|+.+|++++++.... .+....+.++.++|.+|..+|++++|+.++++++.+.... .++.....++..++.
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 275 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGN 275 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHH
Confidence 999999999999999998774 4556677899999999999999999999999999998764 334444555566665
Q ss_pred HHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 379 FESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 379 l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
+.....+..++......................++..+|.+|..+|++++|+.+|++++++.....
T Consensus 276 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 341 (406)
T 3sf4_A 276 TYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 341 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 544433333333222211111111222334577899999999999999999999999999988764
No 6
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=1.4e-20 Score=203.13 Aligned_cols=276 Identities=13% Similarity=0.085 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|.+++..|++++|+.++++++.+.... .+.+..+.++..+|.+|..+|++++|+.++++++.+..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 117 (338)
T 3ro2_A 42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--N 117 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--c
Confidence 36778899999999999999999999999998776 4567778999999999999999999999999999998774 3
Q ss_pred CChhhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 298 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~--------------------yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~ 298 (1155)
+......++.++|.+|..+|+ +++|+.++++++.+.... .+.+..+.++.++|.+|..
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999 999999999999988775 3457778899999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 001110 299 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 378 (1155)
Q Consensus 299 lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~ 378 (1155)
+|++++|+.+|++++++.... .+....+.++.++|.+|..+|++++|+.++++++.+.... .+......++..++.
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 271 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGN 271 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHH
Confidence 999999999999999998775 4556677899999999999999999999999999988764 334444555555554
Q ss_pred HHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 379 FESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 379 l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
+.....+..++......................++..+|.+|..+|++++|+.+|++++++.+++.
T Consensus 272 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 272 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 444333333333222111111111222334677899999999999999999999999999987754
No 7
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=1.1e-20 Score=214.92 Aligned_cols=266 Identities=16% Similarity=0.059 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...++.+|..++..|++++|+.+|++|+.+.... .+.+..+.++++||.+|..+|++++|+.++++|+.++.+.. ..
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~ 177 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LY 177 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-TC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-Cc
Confidence 4467788999999999999999999999987665 45677899999999999999999999999999999987641 12
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
....+.+++++|.+|..+|++++|+++|++|+.+.+.. .+....+.++.++|.+|..+|++++|+.+|++|+++.+..
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 34678999999999999999999999999999998774 3445678899999999999999999999999999998765
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-----HHHHHHHHhcC
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA-----FEQQEAARNGT 394 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~-----~e~AeAi~~~~ 394 (1155)
.++..+.+++++|.+|..+|++++|+.++++++++..+...+.... ....+..+.... ...+.......
T Consensus 256 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~l~~ly~~~~~~~~~~~al~~~~~~ 329 (378)
T 3q15_A 256 ---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE---LFLFLQAVYKETVDERKIHDLLSYFEKK 329 (378)
T ss_dssp ---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH---HHHHHHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred ---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHhCCCcHHHHHHHHHHHHhC
Confidence 3455588999999999999999999999999999875543322222 223333332221 22222221111
Q ss_pred CCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhcC
Q 001110 395 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 445 (1155)
Q Consensus 395 ~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~~ 445 (1155)
.......+++..+|.+|..+|++++|+.+|++++++..++..
T Consensus 330 ---------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 330 ---------NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 112356678899999999999999999999999999988873
No 8
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=2.7e-20 Score=210.93 Aligned_cols=276 Identities=16% Similarity=0.130 Sum_probs=222.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
...+..++.+|..++..|++++|+.+|++++++. ..+....+.++..+|.+|..+|++++|+.+|++++.+.++.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM- 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence 4567788899999999999999999999999872 12233356789999999999999999999999999998775
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC---------------
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN--------------- 301 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~--------------- 301 (1155)
.+.+....++.++|.+|..+|++++|+.+|++++.+.... .+++..+.++.++|.+|..+|+
T Consensus 120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 4567889999999999999999999999999999998775 3567889999999999999999
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 001110 302 --VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 379 (1155)
Q Consensus 302 --~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l 379 (1155)
+++|+.+|++++++.... .+.+..+.++.++|.+|..+|++++|+.++++++++.... .+......++..++.+
T Consensus 197 ~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~ 272 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNS 272 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHH
Confidence 999999999999998776 4567788899999999999999999999999999998774 2334444455555544
Q ss_pred HHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 380 ESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 380 ~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
.....+..++......................++..+|.+|..+|++++|+.+|++++++.....
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 44333333332222111111111122234578899999999999999999999999999988764
No 9
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=1e-19 Score=196.31 Aligned_cols=272 Identities=14% Similarity=0.085 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++..|..++..|++++|+.+|++++++. ..+....+.++..+|.+|...|++++|+.++++++.+.+.. .
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 77 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 77 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence 35567888999999999999999999999872 12233347889999999999999999999999999998775 4
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-----------------
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN----------------- 301 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~----------------- 301 (1155)
+.+....++..+|.+|..+|++++|+.+|++++.+.... .+....+.++.++|.+|..+|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 567778999999999999999999999999999998774 3455678899999999999999
Q ss_pred ---hHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 001110 302 ---VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 378 (1155)
Q Consensus 302 ---~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~ 378 (1155)
+++|+.+|++++.+.... .+.+..+.++.++|.+|..+|++++|+.++++++++.... .+......++..++.
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGN 231 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHH
Confidence 999999999999988776 4567778899999999999999999999999999998775 233444445555554
Q ss_pred HH--HHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 379 FE--SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 379 l~--qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
+. .+.++.+....... ...............++..+|.+|..+|++++|+.+|++++++.....
T Consensus 232 ~~~~~g~~~~A~~~~~~a--l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKT--LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHTCHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHH--HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 43 33333333322211 111111122234577899999999999999999999999999987764
No 10
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=6.4e-20 Score=205.44 Aligned_cols=273 Identities=13% Similarity=0.075 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..++.+|..++..|++++|+.+|++++++. ..+....+.++..+|.+|...|++++|+.++++++.+.+.. .+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cc
Confidence 5568889999999999999999999999872 12233357899999999999999999999999999998775 45
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC------------------
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN------------------ 301 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~------------------ 301 (1155)
.+..+.++.++|.+|..+|++++|+.+|++++.+..... +....+.++.++|.+|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 677889999999999999999999999999999987752 446678899999999999999
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 001110 302 --VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 379 (1155)
Q Consensus 302 --~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l 379 (1155)
+++|+.+|++++++.... .+.+..+.++.++|.+|..+|++++|+.++++++++.... .+......++..++.+
T Consensus 161 ~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHH
Confidence 999999999999998775 4567788899999999999999999999999999998774 3334444555555544
Q ss_pred HHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 380 ESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 380 ~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
.....+..++......................++..+|.+|..+|++++|+.+|++++++.....
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 43333333332221111111111122334578899999999999999999999999999987754
No 11
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.85 E-value=2.6e-19 Score=189.47 Aligned_cols=201 Identities=22% Similarity=0.206 Sum_probs=187.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
...+..++.+|.+++..|++++|+.+|++++++....++.+++..+.++..+|.+|..+|++++|+.+|++++.+.++..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 55688899999999999999999999999999999998888999999999999999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+.+++....++.++|.+|..+|++++|+.+|++++.+++...+.+++....++.++|.+|..+|++++|+.+|++++++.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999998888899999999999999999999999999999999985
Q ss_pred HHh-----------------------------------------cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 317 QRL-----------------------------------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 317 ek~-----------------------------------------lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
... .+.+++....++..+|.+|..+|++++|+.+|++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432 123567888999999999999999999999999998
Q ss_pred HH
Q 001110 356 QI 357 (1155)
Q Consensus 356 eI 357 (1155)
++
T Consensus 280 ~~ 281 (283)
T 3edt_B 280 RN 281 (283)
T ss_dssp TT
T ss_pred Hh
Confidence 65
No 12
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=4.5e-18 Score=183.27 Aligned_cols=203 Identities=23% Similarity=0.241 Sum_probs=186.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
....+..++.+|.++...|++++|+.+|++++.+.....+.+++..+.++..+|.+|..+|++++|+.++++++.+.++.
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 34557788999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 236 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
.+.+++....++.++|.+|..+|++++|+++|++++.+.....+.+++....++.++|.+|..+|++++|+.+|++++++
T Consensus 145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999888889999999999999999999999999999999987
Q ss_pred HHHh-----------------------------------------cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 001110 316 NQRL-----------------------------------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 354 (1155)
Q Consensus 316 ~ek~-----------------------------------------lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkA 354 (1155)
.... ....++....++..+|.+|..+|++++|+.+|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 225 AHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5432 11246778899999999999999999999999999
Q ss_pred HHHH
Q 001110 355 LQIL 358 (1155)
Q Consensus 355 LeI~ 358 (1155)
+++.
T Consensus 305 l~l~ 308 (311)
T 3nf1_A 305 MRSR 308 (311)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 13
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.1e-17 Score=171.79 Aligned_cols=239 Identities=13% Similarity=0.079 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..++..|++++|+.+|++++++. ....++..+|.+|..+|++++|+.++++++.+.... +
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 72 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R 72 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence 457889999999999999999999999999872 335689999999999999999999999999987553 2
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.+.+....++..+|.+|..+|++++|+.+|++++.+. +. +.++..+|++++|+.++++++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~-----------~~~~~~~~~~~~a~~~~~~~~~~-- 134 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-----RT-----------ADILTKLRNAEKELKKAEAEAYV-- 134 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CC-----------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----ch-----------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence 2344457899999999999999999999999999852 11 23444455556666666665543
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCC
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 397 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~ 397 (1155)
.+....++..+|.++...|++++|+.+|++++.+ .+.+......+..+ ++..+.++.+.........
T Consensus 135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~- 201 (258)
T 3uq3_A 135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAA-LAKLMSFPEAIADCNKAIE- 201 (258)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH-
T ss_pred ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcccHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH-
Confidence 2344555566666666666666666666666543 23333222211111 1222222222221111100
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 398 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 398 ~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
..+....++..+|.+|..+|++++|+.+|++++++.++..
T Consensus 202 -------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 241 (258)
T 3uq3_A 202 -------KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241 (258)
T ss_dssp -------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc
Confidence 0112346788999999999999999999999999996654
No 14
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=2.7e-18 Score=181.27 Aligned_cols=197 Identities=21% Similarity=0.167 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..++.+|..++..|++++|+.+|++++++ +|....++.++|.++..+|++++|+.+|++++.+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 68 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------- 68 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 456788999999999999999999999976 6788899999999999999999999999999997
Q ss_pred ChhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRL-----------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 308 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~l-----------G~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~ 308 (1155)
.|....++.++|.+|..+ |++++|+.+|++++++ .|....++.++|.+|..+|++++|+.+
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHHHH
Confidence 467788999999999999 9999999999999986 456678899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHH
Q 001110 309 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE 388 (1155)
Q Consensus 309 lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~Ae 388 (1155)
|++|+++. ....+++++|.+|..+|++++|+.+|++++++ .++++
T Consensus 141 ~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~P~~~--------------------- 185 (217)
T 2pl2_A 141 LKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-----APKDL--------------------- 185 (217)
T ss_dssp HHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCH---------------------
T ss_pred HHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh---------------------
Confidence 99999873 23567889999999999999999999999865 23332
Q ss_pred HHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001110 389 AARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 437 (1155)
Q Consensus 389 Ai~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKAL 437 (1155)
.++..+|.++..+|++++|+.+|+++-
T Consensus 186 ----------------------~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 186 ----------------------DLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ----------------------HHHHHHHHHHTC---------------
T ss_pred ----------------------HHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 346677888888999999999998754
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=5.2e-18 Score=189.64 Aligned_cols=250 Identities=12% Similarity=0.065 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..++.+|..++..|++++|+.+|++++.+ .|....+++.+|.+|..+|++++|+.+|++++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 128 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-------- 128 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 345788899999999999999999999987 4667889999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP--NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp--~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.|....++.++|.+|..+|++++|+.+|++++.+.......... .....+..+|.+|...|++++|+.+|++++++.
T Consensus 129 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 207 (365)
T 4eqf_A 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN- 207 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-
T ss_pred CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-
Confidence 35667899999999999999999999999999874332110000 124455667999999999999999999999874
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCC
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 397 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~ 397 (1155)
++. ....+++++|.+|..+|++++|+.+|++++++ .+++......+..+ +...+.++.+.........
T Consensus 208 ----p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~- 275 (365)
T 4eqf_A 208 ----GDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGAT-LANGDRSEEAVEAYTRALE- 275 (365)
T ss_dssp ----CSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH-
T ss_pred ----cCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh-
Confidence 221 13567889999999999999999999999976 45555544333222 2233344444333221111
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhcC
Q 001110 398 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 445 (1155)
Q Consensus 398 ~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~~ 445 (1155)
..+....++..+|.+|..+|++++|+.+|++++++.+...+
T Consensus 276 -------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 276 -------IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp -------HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred -------cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence 12234678999999999999999999999999999988664
No 16
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.78 E-value=6.1e-17 Score=182.82 Aligned_cols=238 Identities=18% Similarity=0.139 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
....+..+|.++...|++++|+.+|.+++.. +|....++.++|.+|...|++++|+.+|++++.+
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------- 198 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------- 198 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence 3456778899999999999999999999986 5677889999999999999999999999999986
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
.|....++.++|.++...|++++|+..|++++.+ +|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 199 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 267 (388)
T 1w3b_A 199 -DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-- 267 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 4666789999999999999999999999999986 35557788999999999999999999999999863
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCc
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 398 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~ 398 (1155)
+....++.++|.+|...|++++|+.+|++++++ .+++......+..+ +...+..+.+..........
T Consensus 268 ------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~- 334 (388)
T 1w3b_A 268 ------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-----CPTHADSLNNLANI-KREQGNIEEAVRLYRKALEV- 334 (388)
T ss_dssp ------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHTTTCHHHHHHHHHHHTTS-
T ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc-
Confidence 333467899999999999999999999999976 46666554433322 22233344443333322221
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 399 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 399 ~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
.+....++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 335 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 335 -------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp -------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 2344678999999999999999999999999987554
No 17
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=8.4e-19 Score=186.85 Aligned_cols=244 Identities=11% Similarity=0.042 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..++..|..++..|++++|+.+|++++++ .|....++..+|.+|..+|++++|+.++++++.. ..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~ 70 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT 70 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence 45788899999999999999999999976 3445568999999999999999999999999873 1233
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
.....++.++|.+|..+|++++|+++|++++.+ +|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---- 138 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---- 138 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS----
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC----
Confidence 334778999999999999999999999999986 34445789999999999999999999999998762
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH------hH-HHHHHHHhc
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK------AF-EQQEAARNG 393 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk------~~-e~AeAi~~~ 393 (1155)
+....+++++|..+...+++++|+.+|++++++ .+++......+..+...... .. ...+++...
T Consensus 139 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 139 ----TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL-----KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp ----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 344678899994444556999999999999976 45555443333332222211 00 111122111
Q ss_pred CCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 001110 394 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 394 ~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
...+.. . ...+.+++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 210 ~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 210 APGGAK----Y-KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp GGGGGG----G-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hccccc----c-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 111110 0 12356889999999999999999999999999988764
No 18
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.77 E-value=2.2e-17 Score=186.51 Aligned_cols=237 Identities=17% Similarity=0.175 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|..+...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+..|++++.+
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------- 130 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY------- 130 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 4677889999999999999999999999987 5677788999999999999999999999999886
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
.|+...++.++|.++..+|++++|+++|++++.. +|....++.++|.+|...|++++|+.+|++++++.
T Consensus 131 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 199 (388)
T 1w3b_A 131 -NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-- 199 (388)
T ss_dssp -CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--
T ss_pred -CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 4566778889999999999999999999999875 45567788999999999999999999999998863
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCc
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 398 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~ 398 (1155)
+....++.++|.++...|++++|+..|++++.+ .+++......+..+ +...+..+.+.........
T Consensus 200 ------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~-- 265 (388)
T 1w3b_A 200 ------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-----SPNHAVVHGNLACV-YYEQGLIDLAIDTYRRAIE-- 265 (388)
T ss_dssp ------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH--
T ss_pred ------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh--
Confidence 334567888999999999999999999988875 45665544333222 2233333333332221111
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 399 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 399 ~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
..+...+++..+|.+|..+|++++|+.+|++++++.+
T Consensus 266 ------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 302 (388)
T 1w3b_A 266 ------LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302 (388)
T ss_dssp ------TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred ------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 1123456788888889889999999999998888754
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=1.9e-17 Score=183.89 Aligned_cols=254 Identities=13% Similarity=0.086 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..++.+|..++..|++++|+.+|++++++ +|....++..+|.+|..+|++++|+.+|++++.+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 127 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-------- 127 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------
Confidence 345678899999999999999999999976 4667789999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------------------------------h
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL------------------------------------------T 277 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~------------------------------------------l 277 (1155)
.+....++..+|.+|..+|++++|+.+|++++.+... .
T Consensus 128 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 207 (368)
T 1fch_A 128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 207 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3556788999999999999999999999988764211 0
Q ss_pred cCCCChh--HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 278 CGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 278 ~G~dhp~--~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
.. ..|. ...++.++|.+|...|++++|+.+|++++++. +....+++++|.+|...|++++|+.+|++++
T Consensus 208 ~~-~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 278 (368)
T 1fch_A 208 VR-LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PNDYLLWNKLGATLANGNQSEEAVAAYRRAL 278 (368)
T ss_dssp HH-HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH-hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 0122 46678889999999999999999999988863 2335678889999999999999999999888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhh---hhcCCCcHHHHHHHHHHHHHHcCChHHHHHH
Q 001110 356 QILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI---ASKGHLSVSDLLDYINPSHDTKGRNVSTLKR 432 (1155)
Q Consensus 356 eI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~---a~~~~~svaelL~~Lg~~y~~qGdyeeAle~ 432 (1155)
.+ .+++......+..+ +...+.++.+.............. ....+.....++..+|.+|..+|++++|...
T Consensus 279 ~~-----~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 279 EL-----QPGYIRSRYNLGIS-CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HH-----CTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred Hh-----CCCcHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 75 35555443332222 233333333333222111110000 0111233467888899999999999999999
Q ss_pred HHHHHHHhhhhc
Q 001110 433 KTYVAKVKGNFY 444 (1155)
Q Consensus 433 yeKALeL~~kl~ 444 (1155)
++++++.+.+.+
T Consensus 353 ~~~~l~~~~~~~ 364 (368)
T 1fch_A 353 DARDLSTLLTMF 364 (368)
T ss_dssp HTTCHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 998888877665
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=180.86 Aligned_cols=241 Identities=10% Similarity=0.015 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G-dydeAle~~eKALei~er~lG~D~ 240 (1155)
.+..++.+++..|++++|+.++.++++. ++....++..+|.++...| ++++|+.+|++++.+ .
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~ 121 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDL--------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------E 121 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------C
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------C
Confidence 4555677888999999999999999986 4566779999999999999 999999999999875 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
+....++..+|.+|..+|++++|+.+|++++.+. |....++..+|.+|...|++++|+.+|++++++.
T Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---- 189 (330)
T 3hym_B 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---- 189 (330)
T ss_dssp TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----
Confidence 5556789999999999999999999999999862 3334567789999999999999999999998764
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH--HHHHhHHHHHHHHhcCCCC
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD-LRTQDAAAWLEY--FESKAFEQQEAARNGTRKP 397 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh-~~t~~al~~La~--l~qk~~e~AeAi~~~~~~~ 397 (1155)
+....++..+|.+|..+|++++|+.++++++.+.....+... +....++..++. ...+.++.+..........
T Consensus 190 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 190 ----PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 334578899999999999999999999999998755433221 111223333333 3333344433332211110
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 398 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 398 ~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
.+....++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 266 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 266 --------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp --------STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred --------CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 1123467899999999999999999999999887654
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.75 E-value=7.3e-17 Score=163.24 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..++.+|.++..+|+|++|+.+|++++++ +|....++..+|.+|..+|++++|+..+++++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------- 68 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------- 68 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 567889999999999999999999999988 6778889999999999999999999999999886
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
.+....++..+|.++...++++.|+.++.+++.+ +|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--- 137 (184)
T 3vtx_A 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--- 137 (184)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---
Confidence 3556788999999999999999999999999986 34556788999999999999999999999999874
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
|....+++++|.+|..+|++++|+.+|++|+++
T Consensus 138 -----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 -----PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 445678999999999999999999999999976
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=8.4e-17 Score=185.92 Aligned_cols=261 Identities=12% Similarity=0.018 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~-d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
+..+..+|.++..+|++++|+++|++|+++.....+. .++..+.+|.+||.+|..+|++++|+.++++++.+.+...+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 5567778999999999999999999999998776443 467788999999999999999999999999999999988777
Q ss_pred CChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---HHHCCChHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM---EEGLGNVHVALRYLHKAL 313 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG--~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~i---y~~lG~~deAle~lekAL 313 (1155)
.+...+.++.++|.++...| +|++|+++|++|+.+ .++++. ++.++|.+ +...+++++|+..|++|+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~---~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPE---FTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 77788889999998887654 699999999999986 233333 33333333 334455555666665555
Q ss_pred HHHHH-------------hcCC-----------------CcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcC
Q 001110 314 KCNQR-------------LLGP-----------------DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 363 (1155)
Q Consensus 314 ei~ek-------------~lG~-----------------dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG 363 (1155)
++... ..+. .++....++.++|.+|...|++++|+.+|++++++ .
T Consensus 203 ~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~ 277 (472)
T 4g1t_A 203 RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-----I 277 (472)
T ss_dssp HHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S
T ss_pred hcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----C
Confidence 43100 0000 01233456788999999999999999999999876 3
Q ss_pred CCCHHHHHHHHHHHHHH------------------HHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCC
Q 001110 364 PDDLRTQDAAAWLEYFE------------------SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGR 425 (1155)
Q Consensus 364 ~dh~~t~~al~~La~l~------------------qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGd 425 (1155)
+++......+..+.... ....+.+...... .....+....++..+|.+|..+|+
T Consensus 278 p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--------a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 278 PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK--------ADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH--------HHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH--------HhhcCCchhhhhhhHHHHHHHhcc
Confidence 55554433222111000 0001111111000 001112233457889999999999
Q ss_pred hHHHHHHHHHHHHHhh
Q 001110 426 NVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 426 yeeAle~yeKALeL~~ 441 (1155)
+++|+.+|++++++..
T Consensus 350 ~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999998653
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=5.2e-17 Score=188.14 Aligned_cols=243 Identities=9% Similarity=0.049 Sum_probs=194.9
Q ss_pred hcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Q 001110 153 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD-FNQATIYQQKALDI 231 (1155)
Q Consensus 153 ~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gd-ydeAle~~eKALei 231 (1155)
..........+..+|.++...|++++|+.+|++++.+ +|....+|+++|.+|..+|+ +++|+.+|++|+.+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l 161 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 161 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999999999988 68888999999999999997 99999999999997
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 001110 232 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 311 (1155)
Q Consensus 232 ~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lek 311 (1155)
.|....+|+++|.+|..+|++++|+.+|++++.+ +|....+|+++|.++..+|++++|+.+|++
T Consensus 162 --------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 162 --------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp --------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5777899999999999999999999999999986 566688999999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChhHH-----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-hH
Q 001110 312 ALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLS-----VQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK-AF 384 (1155)
Q Consensus 312 ALei~ek~lG~dhp~~a~a~~nLA~iy~~-lGdyeeA-----le~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk-~~ 384 (1155)
+|++. +....+|+++|.+|.. .|.+++| +.+|++|+.+ .+++...+..+.++...... .+
T Consensus 226 al~l~--------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 226 LLKED--------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp HHHHC--------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHTTTCGGGC
T ss_pred HHHhC--------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHccCccch
Confidence 99974 4456889999999999 5555888 5888888875 57777665554444322110 12
Q ss_pred HHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HHHhh
Q 001110 385 EQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKG--------R-NVSTLKRKTYV-AKVKG 441 (1155)
Q Consensus 385 e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qG--------d-yeeAle~yeKA-LeL~~ 441 (1155)
+.+....... ...+....++..+|.+|..+| + +++|+.+|+++ +++.+
T Consensus 293 ~~a~~~~~~~---------~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 293 PNLLNQLLDL---------QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHH---------TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHh---------ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc
Confidence 2222211111 122344567889999998874 3 58899999988 66654
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=5.1e-17 Score=176.56 Aligned_cols=245 Identities=12% Similarity=0.090 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...++.+|..++..|+|++|+.+|++++.. +|....++..++.++...|++++|+.++++++..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------- 85 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL-------- 85 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------
Confidence 345778889999999999999999999976 4555667888999999999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG-~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
.+....++..+|.++...| ++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++++.
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-- 155 (330)
T 3hym_B 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-- 155 (330)
T ss_dssp CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--
T ss_pred CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--
Confidence 3555678999999999999 999999999999874 34456779999999999999999999999999875
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCc
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 398 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~ 398 (1155)
++ ....+..+|.+|...|++++|+.++++++++ .+++......+..+ +...+.++.+...........
T Consensus 156 ---~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 156 ---KG---CHLPMLYIGLEYGLTNNSKLAERFFSQALSI-----APEDPFVMHEVGVV-AFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp ---TT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHH
T ss_pred ---cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CCCChHHHHHHHHH-HHHcccHHHHHHHHHHHHHHh
Confidence 22 2355777999999999999999999999865 45555444333322 223333333332221111000
Q ss_pred hhhh-hcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 399 ASIA-SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 399 ~~~a-~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
.... .........++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 0000 0111234568999999999999999999999999998654
No 25
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.74 E-value=3.6e-17 Score=195.50 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..+++.+..+..+|+|++|+.+|+++|++.++++|.+|+.++.++++||.+|..+|+|++|+.+++++|++.++.+|.+
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 45566667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
||.++.++++||.+|..+|+|++|+.+|++|+++.+..+|++||.++.++.+|+.++..++.|++|+..|++|.+.+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997654
No 26
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.74 E-value=7.9e-16 Score=173.06 Aligned_cols=271 Identities=10% Similarity=-0.019 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..+..+|.+++..|++++|+.++++++.... ..+....+.++..+|.+|...|++++|+.++++++.+..+. .
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 87 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--D 87 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--C
Confidence 356777889999999999999999999998641 11223356688999999999999999999999999998773 3
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
+......++.++|.++..+|++++|+.+|++++.+.....+..++....++.++|.+|..+|++++|+.++++++++...
T Consensus 88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 33455778899999999999999999999999999988665556778889999999999999999999999999998754
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHH-HHHHHHH--HHHHHhHHHHHHHHhcCC
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ-DAAAWLE--YFESKAFEQQEAARNGTR 395 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~-~al~~La--~l~qk~~e~AeAi~~~~~ 395 (1155)
. + ......++..+|.++...|++++|..++++++.+.... + .+.... .....+. ++..+..+.+........
T Consensus 168 ~-~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 168 Y-Q--PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-K-YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp S-C--GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-C-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred c-C--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 3 2 22355788899999999999999999999999875432 1 122111 1111222 334445555554444333
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 001110 396 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 396 ~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
..... ........+..++.++..+|++++|+.++++++.+....
T Consensus 243 ~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 286 (373)
T 1hz4_A 243 KPEFA----NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 286 (373)
T ss_dssp CCCCT----TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCC----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 22211 001122356788999999999999999999999887763
No 27
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.74 E-value=9.1e-17 Score=177.19 Aligned_cols=191 Identities=10% Similarity=-0.076 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..+...|.+|...|+|++|+.+|.+|+++.... .+....+.+|.++|.+|..+|++++|+.+|++|+.+.... .+.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~ 113 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQF 113 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCH
Confidence 344455778889999999999999999998765 3445668899999999999999999999999999998764 334
Q ss_pred hhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 241 PDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~l-G~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
...+.++.++|.+|..+ |++++|+.+|++|+.+.... .+......++.++|.+|..+|++++|+.+|++++++....
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 45678999999999996 99999999999999997652 1223446789999999999999999999999999875221
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
+........+++++|.+|..+|++++|+.+|++++++.
T Consensus 192 -~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 192 -RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp -TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred -CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 01112345678999999999999999999999998753
No 28
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=1.8e-16 Score=173.54 Aligned_cols=241 Identities=15% Similarity=0.081 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...++.+|.+++..|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------- 100 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-------- 100 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence 567889999999999999999999999987 4566789999999999999999999999999875
Q ss_pred Ch---hhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHH
Q 001110 240 HP---DTMKSYGDL------------AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 304 (1155)
Q Consensus 240 ~p---~~a~ay~nL------------A~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~de 304 (1155)
.+ ....++..+ |.++...|++++|+++|++++.. .|....++..+|.++...|++++
T Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3ieg_A 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEGEPRK 172 (359)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHH
Confidence 23 344444444 89999999999999999999986 34446789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH--------
Q 001110 305 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL-------- 376 (1155)
Q Consensus 305 Ale~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~L-------- 376 (1155)
|+.+|++++++. +....+++.+|.+|...|++++|+.++++++++ .+++......+..+
T Consensus 173 A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 173 AISDLKAASKLK--------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHHHHHTTC--------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHHHHHH
Confidence 999999998753 334578899999999999999999999999975 46666554333221
Q ss_pred -H--HHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 377 -E--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 377 -a--~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
+ ++..+.++.+.......... ..........++..+|.+|..+|++++|+.+|++++++.+
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT----EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 1 22333333333222211100 0011112345677889999999999999999999988754
No 29
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.73 E-value=2.2e-16 Score=184.62 Aligned_cols=245 Identities=13% Similarity=0.047 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|..+...|++++|+.+|++++.+ .+. ..++..+|.+|...|++++|+.+|++++.+
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 305 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL------- 305 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc-------
Confidence 4667899999999999999999999999987 344 778999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
.+....++..+|.+|..+|++++|+.+|++++.+ .|....++.++|.+|...|++++|+.+|++++++.
T Consensus 306 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 374 (537)
T 3fp2_A 306 -NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-- 374 (537)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 3556778999999999999999999999999986 23345778999999999999999999999999874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----------HhHHHHH
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES----------KAFEQQE 388 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~q----------k~~e~Ae 388 (1155)
+....++..+|.+|...|++++|+.+|++++++....................+... +.++.+.
T Consensus 375 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 375 ------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp ------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred ------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 233467888999999999999999999999998755422221111111111112222 3344443
Q ss_pred HHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 389 AARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 389 Ai~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
......... .+....++..+|.+|..+|++++|+.+|++++++.+...
T Consensus 449 ~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 449 KLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 332211110 123347889999999999999999999999999987654
No 30
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=7e-17 Score=168.31 Aligned_cols=206 Identities=15% Similarity=0.141 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..++..|++++|+.+|+++++. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------ 86 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------ 86 (243)
T ss_dssp ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence 34677889999999999999999999999874 4566789999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.+....++..+|.+|..+|++++|+++|++++.+. +....++..+|.+|...|++++|+.+|++++++.
T Consensus 87 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 155 (243)
T 2q7f_A 87 --DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN- 155 (243)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred --CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 34567889999999999999999999999999862 2335678999999999999999999999999874
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCC
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 397 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~ 397 (1155)
+....++..+|.+|...|++++|+.++++++.. .+++
T Consensus 156 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~------------------------------- 192 (243)
T 2q7f_A 156 -------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-----DPGH------------------------------- 192 (243)
T ss_dssp -------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----CTTC-------------------------------
T ss_pred -------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc-------------------------------
Confidence 223467889999999999999999999988754 1111
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 001110 398 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 398 ~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
..++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 193 ------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 193 ------------ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp ------------HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred ------------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 2357789999999999999999999999986553
No 31
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.73 E-value=5.7e-17 Score=202.21 Aligned_cols=174 Identities=23% Similarity=0.289 Sum_probs=159.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
....+..+..+|.++..+|++++|+.+|++|+++ +|..+.++++||.+|..+|++++|+.+|++|+++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---- 72 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---- 72 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 3456889999999999999999999999999998 6788899999999999999999999999999997
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 236 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
.|+...+|++||.+|..+|++++|+++|++|+++ +|..+.+++++|.+|..+|++++|+.+|++|+++
T Consensus 73 ----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 73 ----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5777899999999999999999999999999987 4666889999999999999999999999999997
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 316 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 316 ~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
. +....++.+||.+|..+|++++|++.+++++++....
T Consensus 141 ~--------P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 141 K--------PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp C--------SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred C--------CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 4 3456789999999999999999999999999886543
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=2.9e-16 Score=165.61 Aligned_cols=205 Identities=18% Similarity=0.100 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..++.+|..++..|++++|+.+|++++++ .+....++..+|.+|...|++++|+.++++++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------- 100 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-------- 100 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 788999999999999999999999999987 4556789999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
.+....++..+|.+|..+|++++|+++|++++. .+..+....++.++|.+|...|++++|+.+|++++++.
T Consensus 101 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 171 (252)
T 2ho1_A 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--- 171 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 344577899999999999999999999999886 22467778899999999999999999999999999864
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCch
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 399 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~ 399 (1155)
+. ...++..+|.+|..+|++++|+.+++++++. .+.+
T Consensus 172 --~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~--------------------------------- 208 (252)
T 2ho1_A 172 --RN---QPSVALEMADLLYKEREYVPARQYYDLFAQG-----GGQN--------------------------------- 208 (252)
T ss_dssp --SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCCC---------------------------------
T ss_pred --cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCc---------------------------------
Confidence 22 3567889999999999999999999887642 1221
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 400 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 400 ~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
...+..++.++..+|++++|+.++++++++.+.
T Consensus 209 ----------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 209 ----------ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 234667888889999999999999999988654
No 33
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.73 E-value=1.3e-16 Score=177.27 Aligned_cols=221 Identities=13% Similarity=0.039 Sum_probs=176.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHH-hc--CCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 001110 172 DKGKLEDAVTYGTKALAKLVA-VC--GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 248 (1155)
Q Consensus 172 ~~GdyeeAle~~~eALel~e~-i~--G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~ 248 (1155)
..|++++|.+++++|.+.... .+ +.+....+..|...|.+|..+|++++|+.+|++++.+..+. .+....+.+|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 357888999999999887653 22 23445556678888999999999999999999999998775 34556788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 001110 249 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 328 (1155)
Q Consensus 249 nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a 328 (1155)
++|.+|..+|++++|+.+|++|+.++... | +....+.++.++|.+|.. |++++|+.+|++|+++.... .+....+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~ 155 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVEN-G-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAA 155 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHH
Confidence 99999999999999999999999998753 2 334567899999999999 99999999999999998763 2344567
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCc
Q 001110 329 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 408 (1155)
Q Consensus 329 ~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~s 408 (1155)
.++.++|.+|..+|+|++|+.+|++++.+..+.. ... .
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~----------------------------------------~ 193 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYP----------------------------------------T 193 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHH----------------------------------------H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--Chh----------------------------------------H
Confidence 8999999999999999999999999998865431 111 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 409 VSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 409 vaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
....+..+|.++..+|++++|+.+|++++ +.+.
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 22345566777777788888888888777 5544
No 34
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.73 E-value=6.9e-16 Score=168.94 Aligned_cols=246 Identities=16% Similarity=0.083 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|..++..|++++|+.+|++++.. .|....++..+|.+|..+|++++|+.++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL------- 66 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 3567899999999999999999999999986 4666789999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh---hHHHHHHHH------------HHHHHHCCChH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP---NTAATYINV------------AMMEEGLGNVH 303 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp---~~a~a~~nL------------A~iy~~lG~~d 303 (1155)
.|....++..+|.+|..+|++++|+.+|++++.+ .| ....++..+ |.++...|+++
T Consensus 67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 3555688999999999999999999999999874 23 344444444 89999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 001110 304 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA 383 (1155)
Q Consensus 304 eAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~ 383 (1155)
+|+.+|+++++.. +....++..+|.+|...|++++|+.++++++.+ .+.+......+..+ +...+.
T Consensus 138 ~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~-~~~~~~ 203 (359)
T 3ieg_A 138 AAITFLDKILEVC--------VWDAELRELRAECFIKEGEPRKAISDLKAASKL-----KSDNTEAFYKISTL-YYQLGD 203 (359)
T ss_dssp HHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CSCCHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHhC--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHcCC
Confidence 9999999999874 233577899999999999999999999999865 46666544333322 233334
Q ss_pred HHHHHHHHhcCC--CCchhhhhc--CCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 384 FEQQEAARNGTR--KPDASIASK--GHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 384 ~e~AeAi~~~~~--~~~~~~a~~--~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
++.+........ .+....... ...........+|.++..+|++++|+.+|++++++.+.
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 444333222111 111000000 00001112345588899999999999999999987654
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.73 E-value=2.8e-16 Score=179.80 Aligned_cols=251 Identities=16% Similarity=0.068 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
...+..++.+|..++..|++++|+.+|+++++. +|....+++.+|.+|..+|++++|+.+|++++.+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 89 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL----- 89 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 344555566666666666666666666666554 2334555566666666666666666666665554
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------h------------------cC---------
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL----------T------------------CG--------- 279 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~----------l------------------~G--------- 279 (1155)
.+....++..+|.+|..+|++++|+.+|++++.+... + .|
T Consensus 90 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 90 ---KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2333445555555555555555555555554431000 0 00
Q ss_pred ----CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 280 ----PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 280 ----~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
...|....++..+|.+|...|++++|+.+|++++++. +....++..+|.+|...|++++|+.+|++++
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0023334566777777777777777777777777664 2234678888999999999999999998888
Q ss_pred HHHHHHcCCCCHHHHHHHHHH---------H--HHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcC
Q 001110 356 QILRAKLGPDDLRTQDAAAWL---------E--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKG 424 (1155)
Q Consensus 356 eI~kk~lG~dh~~t~~al~~L---------a--~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qG 424 (1155)
.+ .+++......+..+ + ++..+.++.+........... .........++..+|.++...|
T Consensus 239 ~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 239 KL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHTTT
T ss_pred Hh-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHCC
Confidence 54 45665544333111 1 222333333322221110000 0000012345666666666666
Q ss_pred ChHHHHHHHHHHHHHh
Q 001110 425 RNVSTLKRKTYVAKVK 440 (1155)
Q Consensus 425 dyeeAle~yeKALeL~ 440 (1155)
++++|+.+|++++++.
T Consensus 310 ~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQME 325 (450)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666666653
No 36
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.73 E-value=9.7e-17 Score=191.75 Aligned_cols=154 Identities=11% Similarity=-0.000 Sum_probs=146.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 205 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 284 (1155)
Q Consensus 205 l~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~ 284 (1155)
....+..+..+|+|++|+.+|+++|++.++++|.+|+.++.++++||.+|..+|+|++|+.+|+++|++.++.+|++||.
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 33445567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 285 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 285 ~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
++.+++|||.+|..+|+|++|+.+|++|+++.+..+|++|+.++.++.+|+.++..++.|++|...|+++.+.+
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886543
No 37
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.72 E-value=1.7e-15 Score=171.89 Aligned_cols=218 Identities=15% Similarity=0.109 Sum_probs=178.3
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001110 154 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 233 (1155)
Q Consensus 154 ~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e 233 (1155)
......+..++.+|.++...|++++|+.++.+|++++... +...+..+.++.+||.+|..+|++++|+.+|++|+.+.+
T Consensus 137 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 215 (383)
T 3ulq_A 137 KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3345578899999999999999999999999999998775 223567889999999999999999999999999999988
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 001110 234 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 313 (1155)
Q Consensus 234 r~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekAL 313 (1155)
+. .+.+..+.++.+||.+|..+|++++|+.+|++|+.+.+... +.+..+.++.++|.+|..+|++++|+.+|++|+
T Consensus 216 ~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 216 AE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hc--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 75 45677888999999999999999999999999999987742 227789999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHH
Q 001110 314 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFE 385 (1155)
Q Consensus 314 ei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e 385 (1155)
++.... . .+.....+..+|.+|...|++ ..+++|+.++++. ...+....+...++.+.....+
T Consensus 292 ~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~ 354 (383)
T 3ulq_A 292 AYSQKA--G-DVIYLSEFEFLKSLYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKN 354 (383)
T ss_dssp HHHHHH--T-CHHHHHHHHHHHHHHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHc--C-CHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCC
Confidence 998765 2 233334477899999999996 4566666666665 3445555566666655444333
No 38
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=3.1e-17 Score=183.42 Aligned_cols=258 Identities=10% Similarity=-0.031 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|.++...|++++|+.+|++++++ +|....++..+|.+|..+|++++|+.+|++++.+.......
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 169 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHH
Confidence 3677899999999999999999999999987 46678899999999999999999999999999975432111
Q ss_pred CCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 239 DHP--DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 239 D~p--~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
... .....+..+|.+|..+|++++|+.+|++++.+ .++. ....++.++|.+|..+|++++|+.+|++++++.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ-----NGDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHH-----SCSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-----CcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 100 12445667799999999999999999999986 2221 046688999999999999999999999999874
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC
Q 001110 317 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 396 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~ 396 (1155)
+....++.++|.+|..+|++++|+.+|++++++ .+++......+..+ +...+.++.+.........
T Consensus 244 --------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 244 --------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-----QPGFIRSRYNLGIS-CINLGAYREAVSNFLTALS 309 (365)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHHTCCHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHH-HHHCCCHHHHHHHHHHHHH
Confidence 334568999999999999999999999999976 45555443333322 2233333333322221111
Q ss_pred Cchhhhh----cCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 397 PDASIAS----KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 397 ~~~~~a~----~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
....... ........++..++.++..+|+.+.|...+++.+..+.+.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~ 361 (365)
T 4eqf_A 310 LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAF 361 (365)
T ss_dssp HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTT
T ss_pred hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhc
Confidence 1100000 00112357899999999999999999999888777666544
No 39
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.72 E-value=6.1e-16 Score=175.69 Aligned_cols=204 Identities=11% Similarity=0.010 Sum_probs=170.4
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001110 154 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 233 (1155)
Q Consensus 154 ~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e 233 (1155)
......+..++.+|.++...|++++|+.++.+|++++.... ......+.++.+||.+|..+|++++|+.+|++|+.+.+
T Consensus 135 ~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 213 (378)
T 3q15_A 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213 (378)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33456788999999999999999999999999999987642 22346789999999999999999999999999999987
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 001110 234 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 313 (1155)
Q Consensus 234 r~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekAL 313 (1155)
+. .+....+.++.+||.+|..+|++++|+++|++++.+.+.. .++....++.++|.+|..+|++++|+.+|++|+
T Consensus 214 ~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 214 DI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 75 3455678899999999999999999999999999998775 356668999999999999999999999999999
Q ss_pred HHHHHhc------------------CC---------------CcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 314 KCNQRLL------------------GP---------------DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 314 ei~ek~l------------------G~---------------dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
++..... +. ..+.....+..+|.+|..+|++++|..+|++++++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 289 DHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 8753321 10 22344556677888888888888888888888888766
Q ss_pred HcC
Q 001110 361 KLG 363 (1155)
Q Consensus 361 ~lG 363 (1155)
...
T Consensus 369 ~~~ 371 (378)
T 3q15_A 369 ILK 371 (378)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=1.6e-15 Score=155.51 Aligned_cols=208 Identities=14% Similarity=0.094 Sum_probs=174.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
...+..++.+|..++..|++++|+.+|++++++ .+....++..+|.+|...|++++|+.++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----- 71 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----- 71 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----
Confidence 455778899999999999999999999999987 4556779999999999999999999999999986
Q ss_pred CCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~l-G~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
.+....++..+|.+|... |++++|+.+|++++. .+..+....++.++|.++...|++++|+.+|+++++.
T Consensus 72 ---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 72 ---KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp ---CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345567899999999999 999999999999987 1345677889999999999999999999999999986
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 001110 316 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP-DDLRTQDAAAWLEYFESKAFEQQEAARNGT 394 (1155)
Q Consensus 316 ~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~-dh~~t~~al~~La~l~qk~~e~AeAi~~~~ 394 (1155)
. + ....++..+|.++..+|++++|+.++++++.+. + .+.
T Consensus 143 ~-----~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~--------------------------- 182 (225)
T 2vq2_A 143 Q-----P---QFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-----EVLQA--------------------------- 182 (225)
T ss_dssp S-----T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSCCH---------------------------
T ss_pred C-----C---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCH---------------------------
Confidence 4 2 235678899999999999999999999888642 2 222
Q ss_pred CCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 395 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 395 ~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
..+..++.++...|++++|..++++++++.+.
T Consensus 183 ----------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 183 ----------------DDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp ----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ----------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 12345666778889999999999888776543
No 41
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.71 E-value=8.4e-16 Score=172.88 Aligned_cols=274 Identities=10% Similarity=-0.049 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..+..+|..+...|++++|+.++.+++.+.... .+....+.++.++|.+|..+|++++|+.++++++.+.++..+.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 129 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 129 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 45677889999999999999999999999998764 2334556778999999999999999999999999999876555
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
+++....++.++|.+|..+|++++|+.++++++.+.... + ++....++.++|.++...|++++|+.++++++.+...
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-Q--PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-C--GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc-C--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 557788899999999999999999999999999986542 1 2335678999999999999999999999999988643
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HHHhHHHHHHHHhcCCC
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQEAARNGTRK 396 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l--~qk~~e~AeAi~~~~~~ 396 (1155)
. +............++.++...|++++|..++++++... .+..+.. ......++.+ ..+..+.+.......
T Consensus 207 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~l~~a-- 279 (373)
T 1hz4_A 207 G-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE---FANNHFL-QGQWRNIARAQILLGEFEPAEIVLEEL-- 279 (373)
T ss_dssp S-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC---CTTCGGG-HHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred c-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC---CCcchhh-HHHHHHHHHHHHHcCCHHHHHHHHHHH--
Confidence 2 11111122222345667889999999999999887532 1111111 1122223322 223333332222111
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 397 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 397 ~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
..............+++..++.++..+|++++|+.+|++++.+....+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g 327 (373)
T 1hz4_A 280 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 327 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc
Confidence 010011111123456888999999999999999999999999987644
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=4.4e-16 Score=157.47 Aligned_cols=171 Identities=18% Similarity=0.194 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 280 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~ 280 (1155)
.+.+|++||.+|..+|++++|+.+|++|+++ +|....++.++|.+|..+|++++|+.++.+++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL------- 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 4678999999999999999999999999997 4677889999999999999999999999999875
Q ss_pred CChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 281 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 281 dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
.+....++..+|.++...++++.|+.++.+++.+. +....++..+|.+|..+|++++|+.+|++++++
T Consensus 69 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 69 -DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred -CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 34456788999999999999999999999999874 334567889999999999999999999998865
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001110 361 KLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 440 (1155)
Q Consensus 361 ~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~ 440 (1155)
.+++ ..++..+|.+|..+|++++|+.+|++|+++.
T Consensus 137 --~p~~-------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 137 --KPGF-------------------------------------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp --CTTC-------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --cchh-------------------------------------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 2222 3457889999999999999999999999987
Q ss_pred hhh
Q 001110 441 GNF 443 (1155)
Q Consensus 441 ~kl 443 (1155)
++.
T Consensus 172 p~~ 174 (184)
T 3vtx_A 172 EKK 174 (184)
T ss_dssp HHH
T ss_pred ccC
Confidence 763
No 43
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=3.1e-16 Score=170.11 Aligned_cols=238 Identities=13% Similarity=0.044 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...++.+|..++..|++++|+.+|+++++. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------- 84 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARML-------- 84 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------
Confidence 345778899999999999999999999986 4567789999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--------------HH-HHHHCCChHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV--------------AM-MEEGLGNVHV 304 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nL--------------A~-iy~~lG~~de 304 (1155)
.+....++..+|.+|..+|++++|+.+|++++... +.+ ...+..+ +. ++...|++++
T Consensus 85 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 85 DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-----PQY---EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TTT---TTC--------------------CCTTSHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----Ccc---HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence 35567889999999999999999999999998752 222 1222222 44 5888899999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhH
Q 001110 305 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF 384 (1155)
Q Consensus 305 Ale~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~ 384 (1155)
|+.+|+++++.. +....++..+|.+|...|++++|+.++++++++ .+++......+..+ +...+.+
T Consensus 157 A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~-~~~~~~~ 222 (327)
T 3cv0_A 157 CRTLLHAALEMN--------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-----RPDDAQLWNKLGAT-LANGNRP 222 (327)
T ss_dssp HHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCH
T ss_pred HHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHH-HHHcCCH
Confidence 999999999864 224578899999999999999999999999876 45555443333322 2233334
Q ss_pred HHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 001110 385 EQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 385 e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
+.+......... ..+....++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 223 ~~A~~~~~~a~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 223 QEALDAYNRALD--------INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 443332221110 012335678899999999999999999999999998764
No 44
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.70 E-value=1.1e-15 Score=174.86 Aligned_cols=247 Identities=17% Similarity=0.114 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH------------HHHHHHHHHhcCCHHHHHHHHH
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGA------------YSLLAVVLYHTGDFNQATIYQQ 226 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~a------------l~nLG~vy~~~GdydeAle~~e 226 (1155)
....++.+|.++...|++++|+.+|++++++. +.+.....+ +..+|.+|...|++++|+.+|+
T Consensus 93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36778899999999999999999999998751 122200033 4455888999999999999999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHH
Q 001110 227 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL 306 (1155)
Q Consensus 227 KALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAl 306 (1155)
+++.+ .+....++..+|.+|...|++++|+.+|++++.+. |....++.++|.+|...|++++|+
T Consensus 168 ~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 168 KILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99986 35567889999999999999999999999999862 334678999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH---------HHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHHH
Q 001110 307 RYLHKALKCNQRLLGPDHIQTAASY---------HAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT-QDAAAWL 376 (1155)
Q Consensus 307 e~lekALei~ek~lG~dhp~~a~a~---------~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t-~~al~~L 376 (1155)
.+|++++.+. +++......+ ..+|.++...|++++|+.+|++++.+ .++++.. ...+..+
T Consensus 232 ~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 232 SEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERI 301 (450)
T ss_dssp HHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHH
Confidence 9999999763 3443332222 44599999999999999999999975 4555543 2344445
Q ss_pred HHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 377 EYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 377 a~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
+.+.....+..+++........ ..+....++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQ------MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHCCCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 4444433333333222111100 01234578999999999999999999999999997654
No 45
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.70 E-value=2.2e-15 Score=161.81 Aligned_cols=204 Identities=18% Similarity=0.152 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..++..|+|++|+.+|++++... +.++....+++.+|.+|+.+|++++|+.+|++++.+.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----- 82 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY----- 82 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----
Confidence 346789999999999999999999999998762 4455558899999999999999999999999999973
Q ss_pred CCChhhHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH--------------HHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYR--------LQHTELALKYVKRALYLLHLTCGPSHPNTAATY--------------INVAMM 295 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~--------lG~yeeAle~yekALei~e~l~G~dhp~~a~a~--------------~nLA~i 295 (1155)
++++....+++.+|.+|+. +|++++|+.+|++++.. .++++....++ +++|.+
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 157 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----YPNHELVDDATQKIRELRAKLARKQYEAARL 157 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----CcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999 99999999999999986 34555555555 899999
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHHHHHHcCCC
Q 001110 296 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----------EAYPLSVQHEQTTLQILRAKLGPD 365 (1155)
Q Consensus 296 y~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~l----------GdyeeAle~lkkALeI~kk~lG~d 365 (1155)
|..+|++++|+.+|+++++.. ++++....+++.+|.+|..+ |++++|+.+|+++++. .++
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~ 227 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-----FPD 227 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-----CTT
T ss_pred HHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-----CCC
Confidence 999999999999999999875 55566778999999999977 8999999999999876 477
Q ss_pred CHHHHHHHHHHHHHHHHhHHH
Q 001110 366 DLRTQDAAAWLEYFESKAFEQ 386 (1155)
Q Consensus 366 h~~t~~al~~La~l~qk~~e~ 386 (1155)
++....+...+..+.......
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHh
Confidence 887777777776665544433
No 46
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.69 E-value=1e-15 Score=168.22 Aligned_cols=194 Identities=12% Similarity=0.032 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM---TAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 234 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~---~A~al~nLG~vy~~~GdydeAle~~eKALei~er 234 (1155)
.....+...+..++..|+|++|+.++++++... ...+. .+..+..+|.+|...+++++|+.+|++|+.+...
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence 334556667788899999999999999998742 12222 2445667999999999999999999999996432
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001110 235 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 314 (1155)
Q Consensus 235 ~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALe 314 (1155)
..+....+.++++||.+|..+|+|++|+.+|++++.+++.. ..+.+..+.+++++|.+|..+|+|++|+.++++|++
T Consensus 148 --~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 148 --GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp --CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 12334457789999999999999999999999999988774 236677888999999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHH
Q 001110 315 CNQRLLGPDHIQTAASYHAIAIALSLMEA-YPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 315 i~ek~lG~dhp~~a~a~~nLA~iy~~lGd-yeeAle~lkkALeI~kk~ 361 (1155)
+.... .+....+.+++++|.+|..+|+ +++|+.+|++|+.+++..
T Consensus 225 ~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 225 ISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 98765 4455678999999999999995 699999999999998764
No 47
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.69 E-value=3.6e-16 Score=195.00 Aligned_cols=176 Identities=19% Similarity=0.182 Sum_probs=157.6
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 197 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 197 d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
..|..+.+|++||.+|..+|++++|+.+|++|+++ +|+...++++||.+|..+|++++|+.+|++|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 36888999999999999999999999999999998 5777899999999999999999999999999987
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 277 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 277 l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
+|..+.+|++||.+|..+|++++|+.+|++|+++. +..+.++++||.+|..+|++++|+.+|++|++
T Consensus 73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--------PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999874 44578899999999999999999999999987
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001110 357 ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 436 (1155)
Q Consensus 357 I~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKA 436 (1155)
+ .+++ .+++.++|.+|..+|++++|.++|+++
T Consensus 140 l-----~P~~-------------------------------------------~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 140 L-----KPDF-------------------------------------------PDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp H-----CSCC-------------------------------------------HHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred h-----CCCC-------------------------------------------hHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 5 3333 345778999999999999999999999
Q ss_pred HHHhhhhc
Q 001110 437 AKVKGNFY 444 (1155)
Q Consensus 437 LeL~~kl~ 444 (1155)
+++.....
T Consensus 172 l~l~~~~~ 179 (723)
T 4gyw_A 172 VSIVADQL 179 (723)
T ss_dssp HHHHHHHH
T ss_pred HHhChhHH
Confidence 99987754
No 48
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=2.6e-16 Score=170.78 Aligned_cols=248 Identities=12% Similarity=0.010 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
....++.+|.++...|++++|+.+|++++++ .+....++..+|.+|...|++++|+.++++++....
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----- 120 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP----- 120 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----
Confidence 3566788999999999999999999999987 456678999999999999999999999999997632
Q ss_pred CChhhHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChH
Q 001110 239 DHPDTMKSYGDL--------------AV-FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 303 (1155)
Q Consensus 239 D~p~~a~ay~nL--------------A~-iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~d 303 (1155)
.....+..+ +. ++...|++++|+.+|++++.. .|....++..+|.+|...|+++
T Consensus 121 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~ 189 (327)
T 3cv0_A 121 ---QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--------NPNDAQLHASLGVLYNLSNNYD 189 (327)
T ss_dssp ---TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHH
T ss_pred ---ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHH
Confidence 112222222 55 588899999999999999986 2345678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 001110 304 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA 383 (1155)
Q Consensus 304 eAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~ 383 (1155)
+|+.+|++++++. +....++..+|.+|...|++++|+.++++++++ .+++......+..+ ++..+.
T Consensus 190 ~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~-~~~~g~ 255 (327)
T 3cv0_A 190 SAAANLRRAVELR--------PDDAQLWNKLGATLANGNRPQEALDAYNRALDI-----NPGYVRVMYNMAVS-YSNMSQ 255 (327)
T ss_dssp HHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHH-HHHhcc
Confidence 9999999999874 233567899999999999999999999999876 45555544333322 233333
Q ss_pred HHHHHHHHhcCCCCchhhhhcC----CCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 384 FEQQEAARNGTRKPDASIASKG----HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 384 ~e~AeAi~~~~~~~~~~~a~~~----~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
++.+.................. ......++..++.++..+|++++|...+++++++.++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 3333322221110000000000 111577899999999999999999999999999887765
No 49
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=5.6e-16 Score=179.05 Aligned_cols=246 Identities=15% Similarity=0.089 Sum_probs=179.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHH
Q 001110 174 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-DHPDTMKSYGDLAV 252 (1155)
Q Consensus 174 GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~-D~p~~a~ay~nLA~ 252 (1155)
++++.++..+++.+...... .++...+.+|+.||.+|..+|++++|+++|++|+++.+...+. .++..+.+|.|+|.
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~--~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEF--QNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTS--CC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 44555666666666554333 2445567889999999999999999999999999998776443 36778899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 001110 253 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL--GNVHVALRYLHKALKCNQRLLGPDHIQTAAS 330 (1155)
Q Consensus 253 iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l--G~~deAle~lekALei~ek~lG~dhp~~a~a 330 (1155)
+|..+|++++|+.+|++++.+.....+..++..+.++.++|.++... ++|++|+.+|++|+++. ++++ .+
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-----p~~~---~~ 174 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----PKNP---EF 174 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----TTCH---HH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-----CCCH---HH
Confidence 99999999999999999999999887777778888999998877664 57999999999999874 4444 44
Q ss_pred HHHHHHH---HHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHH--HHHhHHHHHHHHhcCCCCchhhhhc
Q 001110 331 YHAIAIA---LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL-EYF--ESKAFEQQEAARNGTRKPDASIASK 404 (1155)
Q Consensus 331 ~~nLA~i---y~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~L-a~l--~qk~~e~AeAi~~~~~~~~~~~a~~ 404 (1155)
+..+|.+ +...+++++|++.|++|+++ .+++......+... ..+ ..+..+.+....... ..
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l-----~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a--------l~ 241 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRL-----NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA--------LE 241 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHH-----CSSCHHHHHHHHHHHHHCC------CHHHHHHHHH--------HH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhc-----CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--------HH
Confidence 5555555 44668889999999999976 56666544333211 111 111222222221111 11
Q ss_pred CCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 405 GHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 405 ~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
..+....++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 242 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 12345678899999999999999999999999998765
No 50
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.69 E-value=1.6e-15 Score=167.13 Aligned_cols=190 Identities=11% Similarity=0.002 Sum_probs=152.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001110 208 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 287 (1155)
Q Consensus 208 LG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~ 287 (1155)
.|.+|..+|++++|+.+|++|+.+..+. .+....+.+|.++|.+|..+|++++|+.+|++|+.+.... .+....+.
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~ 118 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGAN 118 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHH
Confidence 3667888999999999999999998774 3445678999999999999999999999999999998764 23345678
Q ss_pred HHHHHHHHHHHC-CChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCC
Q 001110 288 TYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 366 (1155)
Q Consensus 288 a~~nLA~iy~~l-G~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh 366 (1155)
++.++|.+|... |++++|+.+|++|+++.... .+....+.++.++|.+|..+|++++|+.+|++++++. +++
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~ 191 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS-----MGN 191 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----SSC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----hcC
Confidence 999999999996 99999999999999998643 2233456789999999999999999999999988652 111
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 367 LRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 367 ~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
... ......++..+|.+|..+|++++|+.+|++++++.+...
T Consensus 192 ~~~------------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 192 RLS------------------------------------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp TTT------------------------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred Ccc------------------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 100 012345678899999999999999999999999888765
No 51
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.69 E-value=1.6e-15 Score=158.88 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p-~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
...++.+|..++..|+|++|+.+|++++++. + ....+++++|.+|..+|++++|+.+|++++.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------
Confidence 3678999999999999999999999999882 2 34467888999999999999999999999975
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP----NTAATYINVAMMEEGLGNVHVALRYLHKALK 314 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp----~~a~a~~nLA~iy~~lG~~deAle~lekALe 314 (1155)
.|....++.++|.+|..+|++++|+.+|++++.+ .++++ ..+.++.++|.++..+|++++|+.+|++|++
T Consensus 72 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 72 -NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA-----VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp -TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred -CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 4667889999999999999999999999999986 23333 2347899999999999999999999999997
Q ss_pred HHHHhcCCCcHH--HHHHHHHHHHHHHHcCCh---------------------------hHHHHHHHHHHHHHHHHcCCC
Q 001110 315 CNQRLLGPDHIQ--TAASYHAIAIALSLMEAY---------------------------PLSVQHEQTTLQILRAKLGPD 365 (1155)
Q Consensus 315 i~ek~lG~dhp~--~a~a~~nLA~iy~~lGdy---------------------------eeAle~lkkALeI~kk~lG~d 365 (1155)
+. +. ...+++++|.+|..+|+. ++|+.+|++++++ .++
T Consensus 146 ~~--------p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~ 212 (228)
T 4i17_A 146 VT--------SKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-----SPN 212 (228)
T ss_dssp SS--------CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTT
T ss_pred cC--------CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCC
Confidence 53 55 678899999999988887 7777777777765 566
Q ss_pred CHHHHHHHH
Q 001110 366 DLRTQDAAA 374 (1155)
Q Consensus 366 h~~t~~al~ 374 (1155)
+......+.
T Consensus 213 ~~~~~~~l~ 221 (228)
T 4i17_A 213 RTEIKQMQD 221 (228)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 766554443
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=2.6e-15 Score=161.67 Aligned_cols=224 Identities=15% Similarity=0.142 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDINER 234 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~----~GdydeAle~~eKALei~er 234 (1155)
.+..++.+|..++..|++++|+.+|+++++. ....+++.||.+|.. .+++++|+.+|++|+++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence 4667899999999999999999999999872 234689999999999 99999999999999875
Q ss_pred hcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCChHHHH
Q 001110 235 ELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVAL 306 (1155)
Q Consensus 235 ~lG~D~p~~a~ay~nLA~iy~~----lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~----lG~~deAl 306 (1155)
....++.+||.+|.. .+++++|+.+|++++.. + ...+++++|.+|.. .+++++|+
T Consensus 72 -------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 72 -------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp -------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred -------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 146789999999999 99999999999999874 1 35789999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-
Q 001110 307 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES- 381 (1155)
Q Consensus 307 e~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~----lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~q- 381 (1155)
.+|++|++.. ...+++++|.+|.. .+++++|+.+|+++++. .++. +...++.+..
T Consensus 135 ~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~---a~~~lg~~~~~ 194 (273)
T 1ouv_A 135 EYFTKACDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KDSP---GCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCHH---HHHHHHHHHHH
T ss_pred HHHHHHHhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CCHH---HHHHHHHHHHc
Confidence 9999999742 24678899999998 99999999999999864 2333 3334443333
Q ss_pred -----HhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhhh
Q 001110 382 -----KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 382 -----k~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~----qGdyeeAle~yeKALeL~~k 442 (1155)
+..+.+.......... .....+..+|.+|.. .+++++|+.+|++++++.+.
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACEL----------ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCCccHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 3333333332211111 115678899999999 99999999999999988654
No 53
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.68 E-value=1.5e-15 Score=180.65 Aligned_cols=251 Identities=15% Similarity=0.096 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------------------------hcCCCChhhHHHHHHHHH
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVA---------------------------VCGPYHRMTAGAYSLLAV 210 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~---------------------------i~G~d~p~~A~al~nLG~ 210 (1155)
.....++.++..+...|++++|+.+|+++++.... .. ...+....++..+|.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV-DRHPEKAVTWLAVGI 381 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhCcccHHHHHHHHH
Confidence 44677888899999999999999999988764210 00 012445678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001110 211 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 290 (1155)
Q Consensus 211 vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~ 290 (1155)
+|...|++++|+.+|++++.+ .+....++..+|.+|...|++++|+++|++++.+ .|....++.
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~ 445 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--------FQGTHLPYL 445 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--------TTTCSHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHH
Confidence 999999999999999999876 3455678889999999999999999999998864 233456788
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHH
Q 001110 291 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 370 (1155)
Q Consensus 291 nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~ 370 (1155)
.+|.+|...|++++|+.+|++++++. +. ...++..+|.+|...|++++|+.+|++++++..+. +.+.....
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~p~~~~ 516 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF-----QY---DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWA 516 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-----CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCSGGGH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-ccchhhHH
Confidence 89999999999999999999998763 23 34668899999999999999999999999886543 21211112
Q ss_pred HHHHHHHHH--HHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 371 DAAAWLEYF--ESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 371 ~al~~La~l--~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
.++..++.. ..+.++.+.......... .+....++..++.+|...|++++|+.+|++++++.+.
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 333344333 333344433332211100 1234578999999999999999999999999998765
No 54
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.68 E-value=2.2e-15 Score=167.25 Aligned_cols=186 Identities=10% Similarity=-0.019 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
.+...|.+|...|+|++|+.+|.+++++..+. .+....+.+|.++|.+|..+|++++|+.+|++|+.++... .+..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~ 113 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPD 113 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHH
Confidence 34455788999999999999999999998765 3445678899999999999999999999999999998763 3334
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
..+.++.++|.+|.. |++++|+.+|++|+.+.... .+....+.++.++|.+|..+|+|++|+.+|++++++....
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-- 188 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM-- 188 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--
Confidence 567899999999999 99999999999999998763 2234567899999999999999999999999999998764
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 322 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 322 ~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
........++.++|.++..+|++++|+.+|++++ +
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 2344566789999999999999999999999988 5
No 55
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.68 E-value=6.2e-15 Score=149.91 Aligned_cols=179 Identities=16% Similarity=0.102 Sum_probs=150.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 001110 170 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 249 (1155)
Q Consensus 170 yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~n 249 (1155)
++..|+|++|+.+++... .+....+.++..+|.+|..+|++++|+.++++++.+++.. .+.+..+.++.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~ 71 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQ 71 (203)
T ss_dssp -----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHH
Confidence 356899999999554331 1234678899999999999999999999999999998764 456778899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 001110 250 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 329 (1155)
Q Consensus 250 LA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~ 329 (1155)
+|.+|..+|++++|+.+|++++.+.+.. +.+....+.++.++|.++..+|++++|+.+|++++++.+.. .+....+.
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~ 148 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIAC 148 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHH
Confidence 9999999999999999999999998853 33333778899999999999999999999999999998664 34455678
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 330 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 330 a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
++.++|.++..+|++++|+.+++++++++++.
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999998775
No 56
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.67 E-value=3.3e-15 Score=174.62 Aligned_cols=175 Identities=19% Similarity=0.175 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..++..|+|++|+.+|++++.+ +|....++..+|.+|..+|++++|+.+|++++.+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 88 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEI------ 88 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 35788999999999999999999999999987 5667889999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHH-------------------------------------------------
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVK------------------------------------------------- 268 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~ye------------------------------------------------- 268 (1155)
+|....++..+|.+|..+|++++|+.+|+
T Consensus 89 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 166 (537)
T 3fp2_A 89 --KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS 166 (537)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH
T ss_pred --CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH
Confidence 46667899999999999999999988763
Q ss_pred -----------------------------------------------------HHHHHHHHhcC--CCChh----HHHHH
Q 001110 269 -----------------------------------------------------RALYLLHLTCG--PSHPN----TAATY 289 (1155)
Q Consensus 269 -----------------------------------------------------kALei~e~l~G--~dhp~----~a~a~ 289 (1155)
+|+.+++.... ++++. .+.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 246 (537)
T 3fp2_A 167 LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALAL 246 (537)
T ss_dssp HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHH
Confidence 22222222221 22222 35678
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 290 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 290 ~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
..+|.++...|++++|+.+|++++++. + . ..++..+|.+|...|++++|+.+|++++.+
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~~-----~---~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 305 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINLH-----P---T-PNSYIFLALTLADKENSQEFFKFFQKAVDL 305 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----C---C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-----C---C-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 889999999999999999999988763 1 1 345556666666666666666666666543
No 57
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.67 E-value=1.9e-15 Score=166.00 Aligned_cols=195 Identities=11% Similarity=0.011 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
....+...+..++..|+|++|+.++.++++..... .........++.+|.+|...|++++|+.++++|+.+.... .
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~ 149 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--I 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--S
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--C
Confidence 34567778889999999999999999998863210 1112345667889999999999999999999999875432 2
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT-AATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~-a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
+....+.+++++|.+|..+|+|++|+.+|++|+.+.+... +.... +.+++++|.+|..+|+|++|+.+|++|+++..
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444678999999999999999999999999999887642 33333 37999999999999999999999999999985
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHHHHH
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLS-VQHEQTTLQILRAK 361 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeA-le~lkkALeI~kk~ 361 (1155)
.. .+....+.+++++|.+|..+|++++| ..++++|+.+++..
T Consensus 228 ~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 228 RI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 43 44455788999999999999999999 88899999998764
No 58
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.67 E-value=3.7e-15 Score=177.13 Aligned_cols=246 Identities=11% Similarity=0.066 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER------- 234 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er------- 234 (1155)
.+..++..|...|++++|+.+|.++++. +....++..+|.+|...|++++|+.+|++++.....
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 344 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL---------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG---------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC---------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHH
Confidence 3444567777889999999999887754 344678888999999999999999999988764210
Q ss_pred --------------------hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001110 235 --------------------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 294 (1155)
Q Consensus 235 --------------------~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~ 294 (1155)
.. ...+....++..+|.+|...|++++|+++|++++.+ .|....+++.+|.
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~ 415 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLV-DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAH 415 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH-HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH-hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 00 012344667788888888888888888888888875 3444667888888
Q ss_pred HHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 001110 295 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 374 (1155)
Q Consensus 295 iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~ 374 (1155)
+|...|++++|+.+|++++++. + ....++..+|.+|...|++++|+.+|++++++ .+.++.....+.
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~ 482 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARLF-----Q---GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQYDPLLLNELG 482 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT-----T---TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCCCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-----c---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHH
Confidence 8888999999999888887653 2 23466778899999999999999999888865 455665443333
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCc-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 375 WLEYFESKAFEQQEAARNGTRKPDASIASKGHLS-VSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 375 ~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~s-vaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
.+ +...+.++.+..+....... .......+. ...++..++.+|...|++++|+.+|++++++.+
T Consensus 483 ~~-~~~~g~~~~A~~~~~~~~~~--~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 483 VV-AFNKSDMQTAINHFQNALLL--VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HH-HHHTTCHHHHHHHHHHHHHH--HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HH-HHHhCCHHHHHHHHHHHHHh--hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 22 22333333333332211100 000011222 467899999999999999999999999998754
No 59
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.66 E-value=6.8e-16 Score=178.69 Aligned_cols=245 Identities=12% Similarity=0.033 Sum_probs=190.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
...+..++.+|..+...|++++|+.+|++++.. .+. ..++..+|.+|...|++++|+.++++++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 299 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL----- 299 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-----
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-----
Confidence 556788999999999999999999999999987 344 889999999999999999999999999875
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.+....++..+|.+|...|++++|+.+|++++.+ .|....++.++|.+|...|++++|+.+|+++++..
T Consensus 300 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 300 ---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred ---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 3445678999999999999999999999999985 23345688999999999999999999999999864
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-----HHhHHHHHHHH
Q 001110 317 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE-----SKAFEQQEAAR 391 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~-----qk~~e~AeAi~ 391 (1155)
+ ....++..+|.+|...|++++|+.++++++.+..... .......++..++.+. .+.++.+....
T Consensus 369 -----~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 369 -----P---EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD--GIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp -----T---TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS--SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred -----c---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 2 2346788999999999999999999999998754321 1000011223333332 33333333322
Q ss_pred hcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 392 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 392 ~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
...... .+....++..+|.+|..+|++++|+.+|++++++.+...
T Consensus 439 ~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 439 EKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 211110 123356789999999999999999999999999877643
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.66 E-value=4.1e-16 Score=184.58 Aligned_cols=170 Identities=16% Similarity=0.108 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 158 ADGRQLLESSKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~Gdy-eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
..+..++.+|.+++..|+| ++|+.+|++++++ +|....+|+.||.+|+.+|++++|+.+|++|+.+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----- 166 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----- 166 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 4577899999999999999 9999999999988 5677889999999999999999999999999986
Q ss_pred CCCChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--------
Q 001110 237 GLDHPDTMKSYGDLAVFYYRL---------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL-------- 299 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~l---------G~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l-------- 299 (1155)
.|. ..++.++|.+|..+ |++++|+.+|++++.+ +|....+++++|.+|..+
T Consensus 167 ---~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 167 ---CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp ---CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred ---CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 244 58999999999999 9999999999999986 455578899999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 300 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 300 G~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
|++++|+.+|++|+++. +.......+++++|.+|..+|++++|+.+|++++++
T Consensus 235 g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999974 211256788999999999999999999999999875
No 61
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.66 E-value=8.4e-15 Score=169.50 Aligned_cols=251 Identities=14% Similarity=0.020 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..++..|+|++|+.+|++++.. +| ...++..+|.+|..+|++++|+.++++++.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 68 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALEL--------KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALEL------ 68 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc------
Confidence 35788999999999999999999999999987 23 3678999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------------------hc----------------
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL-----------------------TC---------------- 278 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~-----------------------l~---------------- 278 (1155)
.|....++..+|.+|..+|++++|+.+|++++.+... .+
T Consensus 69 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 69 --KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp --CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred --ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 4666789999999999999999999999998764210 00
Q ss_pred --------C------------------------CCChhHHHHHHHHHHHHHH---CCChHHHHHHHHHHHHHHHHhc--C
Q 001110 279 --------G------------------------PSHPNTAATYINVAMMEEG---LGNVHVALRYLHKALKCNQRLL--G 321 (1155)
Q Consensus 279 --------G------------------------~dhp~~a~a~~nLA~iy~~---lG~~deAle~lekALei~ek~l--G 321 (1155)
. -..+.....+..+|.++.. .|++++|+.+|+++++...... .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 0 0012336777888888886 8999999999999999654443 2
Q ss_pred CCc----HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--hHHHHHHHHhcCC
Q 001110 322 PDH----IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK--AFEQQEAARNGTR 395 (1155)
Q Consensus 322 ~dh----p~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk--~~e~AeAi~~~~~ 395 (1155)
+++ +....+++.+|.++...|++++|+.++++++.. .+. ..++..++.+... .++.+.......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~- 296 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----FPR----VNSYIYMALIMADRNDSTEYYNYFDKA- 296 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-----CCC----HHHHHHHHHHHHTSSCCTTGGGHHHHH-
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----Ccc----HHHHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 232 667889999999999999999999999999875 344 2333333333222 111111111110
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 396 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 396 ~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
....+....++..+|.+|...|++++|+.+|++++++.+.
T Consensus 297 -------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 297 -------LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336 (514)
T ss_dssp -------HTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred -------hhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence 0111223457788888999999999999999988876543
No 62
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1e-15 Score=161.57 Aligned_cols=168 Identities=21% Similarity=0.149 Sum_probs=137.0
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhc-----------CCHHHHHH
Q 001110 155 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----------GDFNQATI 223 (1155)
Q Consensus 155 ~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~-----------GdydeAle 223 (1155)
..+.....++.+|.++...|++++|+.+|++++++ .|....++.++|.+|..+ |++++|+.
T Consensus 34 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~ 105 (217)
T 2pl2_A 34 ENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105 (217)
T ss_dssp TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHH
Confidence 34445778899999999999999999999999988 577888999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChH
Q 001110 224 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 303 (1155)
Q Consensus 224 ~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~d 303 (1155)
.|++++++ .|....++.++|.+|..+|++++|+.+|++++.+. ....+++++|.+|..+|+++
T Consensus 106 ~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 106 VLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---------DTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---------cchHHHHHHHHHHHHcCCHH
Confidence 99999997 46677899999999999999999999999999972 23667899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 304 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 304 eAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
+|+.+|++++++. |....++.++|.++..+|++++|+.+|+++.
T Consensus 169 ~A~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 169 EALAQYAKALEQA--------PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHS--------TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999874 4445788999999999999999999988764
No 63
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.65 E-value=1.8e-15 Score=167.96 Aligned_cols=241 Identities=12% Similarity=0.057 Sum_probs=170.6
Q ss_pred HHHHcCCHHHHHH-HHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 001110 169 TALDKGKLEDAVT-YGTKALAKLVAVCGPYHRM-TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 246 (1155)
Q Consensus 169 ~yl~~GdyeeAle-~~~eALel~e~i~G~d~p~-~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~a 246 (1155)
.+...|+|++|+. .|.+++.+. +.++. .+..++.+|.+|...|++++|+.+|++++.+ .|....+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 100 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEA 100 (368)
T ss_dssp ------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 4556789999999 999888652 22222 3567889999999999999999999999985 4566789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCC----
Q 001110 247 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP---- 322 (1155)
Q Consensus 247 y~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~---- 322 (1155)
+..+|.+|..+|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++.+.......
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 172 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 172 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 999999999999999999999999986 34457789999999999999999999999888643211000
Q ss_pred -------------------------------------CcHH--HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcC
Q 001110 323 -------------------------------------DHIQ--TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 363 (1155)
Q Consensus 323 -------------------------------------dhp~--~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG 363 (1155)
..+. ...++..+|.+|...|++++|+.+|++++.+ .
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~ 247 (368)
T 1fch_A 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----R 247 (368)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred HHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Confidence 0111 3577889999999999999999999999976 4
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 001110 364 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 364 ~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
+++......+..+ +...+.++.+.......... .+....++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 248 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 248 PNDYLLWNKLGAT-LANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp TTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5555443332222 22333333333322211110 12345788999999999999999999999999998876
Q ss_pred c
Q 001110 444 Y 444 (1155)
Q Consensus 444 ~ 444 (1155)
.
T Consensus 319 ~ 319 (368)
T 1fch_A 319 R 319 (368)
T ss_dssp -
T ss_pred C
Confidence 4
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=7.9e-15 Score=155.68 Aligned_cols=232 Identities=12% Similarity=-0.011 Sum_probs=167.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 001110 171 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 250 (1155)
Q Consensus 171 l~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nL 250 (1155)
...|++++|+.+|.++++.. ....+..+.++..+|.+|...|++++|+.+|++++.+ .+....++.++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l 83 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYL 83 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHH
Confidence 34578999999999998752 1234678899999999999999999999999999997 35567889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 001110 251 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 330 (1155)
Q Consensus 251 A~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a 330 (1155)
|.+|..+|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++. +++. ..
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~---~~ 147 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDP---FR 147 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HH
T ss_pred HHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCh---HH
Confidence 99999999999999999999986 23446789999999999999999999999999864 3333 22
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHH
Q 001110 331 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS 410 (1155)
Q Consensus 331 ~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~sva 410 (1155)
+..++ ++...|++++|+.++++++... +.+..... ...+ ++.....+.+.............. .+...
T Consensus 148 ~~~~~-~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~-~~~~-~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 215 (275)
T 1xnf_A 148 SLWLY-LAEQKLDEKQAKEVLKQHFEKS-----DKEQWGWN-IVEF-YLGNISEQTLMERLKADATDNTSL----AEHLS 215 (275)
T ss_dssp HHHHH-HHHHHHCHHHHHHHHHHHHHHS-----CCCSTHHH-HHHH-HTTSSCHHHHHHHHHHHCCSHHHH----HHHHH
T ss_pred HHHHH-HHHHhcCHHHHHHHHHHHHhcC-----CcchHHHH-HHHH-HHHhcCHHHHHHHHHHHhcccccc----ccccc
Confidence 22233 3366799999999999888652 22222111 1111 111111122222211111111110 11236
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 411 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 411 elL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
.++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 78999999999999999999999999988653
No 65
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.9e-14 Score=149.21 Aligned_cols=184 Identities=17% Similarity=0.139 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN------- 232 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~------- 232 (1155)
...++.+|.++...|++++|+.+|.+++++.... ..+.+..+.++..+|.+|..+|++++|+.+|++++.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 116 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence 4678899999999999999999999999986543 22334447899999999999999999999999999841
Q ss_pred ------------HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 001110 233 ------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 300 (1155)
Q Consensus 233 ------------er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG 300 (1155)
++.. ...+....++..+|.++...|++++|+.+|++++.+ +|....++.++|.+|..+|
T Consensus 117 ~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~ 187 (258)
T 3uq3_A 117 KLRNAEKELKKAEAEA-YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLM 187 (258)
T ss_dssp HHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhC
Confidence 1111 135777889999999999999999999999999986 2344678999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 301 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 301 ~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
++++|+.+|++++++. +....++..+|.+|..+|++++|+.+|++++++..+.
T Consensus 188 ~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 188 SFPEAIADCNKAIEKD--------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240 (258)
T ss_dssp CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence 9999999999999874 3345778999999999999999999999999987554
No 66
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=1.7e-14 Score=150.23 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...++.+|.++...|++++|+.+|++++++ .+....++..+|.+|..+|++++|+.++++++.+.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------- 121 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------- 121 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------
Confidence 677888999999999999999999999987 45567899999999999999999999999999872
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
+....++..+|.+|..+|++++|+.+|++++.+ .+....++..+|.+|...|++++|+.+|+++++..
T Consensus 122 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 189 (243)
T 2q7f_A 122 -MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD--- 189 (243)
T ss_dssp -CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC---
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 344678999999999999999999999999986 23346688999999999999999999999998864
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~L 376 (1155)
+....++..+|.+|..+|++++|+.++++++++ .+++......+..+
T Consensus 190 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 190 -----PGHADAFYNAGVTYAYKENREKALEMLDKAIDI-----QPDHMLALHAKKLL 236 (243)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHTC-
T ss_pred -----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CcchHHHHHHHHHH
Confidence 223567899999999999999999999999976 56777665554443
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.62 E-value=1.5e-14 Score=142.90 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..+...|++++|+.+|++++.. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------ 71 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD------ 71 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 34677889999999999999999999998764 4556789999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.+....++..+|.+|...|++++|+++|++++.+ +|....++..+|.++...|++++|+.+|+++++..
T Consensus 72 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 140 (186)
T 3as5_A 72 --APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR- 140 (186)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-
Confidence 3455778999999999999999999999999986 23446788999999999999999999999999874
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
+ ....++..+|.++..+|++++|+.++++++++.
T Consensus 141 ----~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 141 ----P---NEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp ----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----c---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2 235788999999999999999999999998764
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=1.1e-14 Score=172.21 Aligned_cols=194 Identities=18% Similarity=0.169 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 001110 178 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF-NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 256 (1155)
Q Consensus 178 eAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gdy-deAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~ 256 (1155)
.....+.+++..+.... ...+..+.+++.+|.+|..+|++ ++|+.+|++|+.+ .|....++++||.+|..
T Consensus 79 ~~~~~~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~ 149 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWK 149 (474)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Confidence 34444555555554433 23567789999999999999999 9999999999997 46667899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CChHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001110 257 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---------GNVHVALRYLHKALKCNQRLLGPDHIQT 327 (1155)
Q Consensus 257 lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l---------G~~deAle~lekALei~ek~lG~dhp~~ 327 (1155)
+|++++|+++|++++.+ .|. ..++.++|.+|..+ |++++|+.+|++|+++. +..
T Consensus 150 ~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~ 212 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------VLD 212 (474)
T ss_dssp HTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTC
T ss_pred cCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------CCC
Confidence 99999999999999985 244 58899999999999 99999999999999974 344
Q ss_pred HHHHHHHHHHHHHc--------CChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCch
Q 001110 328 AASYHAIAIALSLM--------EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 399 (1155)
Q Consensus 328 a~a~~nLA~iy~~l--------GdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~ 399 (1155)
..+++++|.+|..+ |++++|+.+|++++++ .+.
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~---------------------------------- 253 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-----DRK---------------------------------- 253 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----CGG----------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-----CCC----------------------------------
Confidence 67899999999999 9999999999999876 120
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 400 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 400 ~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
......++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 254 ------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 254 ------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp ------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 0012345677777788888888888888888777654
No 69
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.61 E-value=4.7e-14 Score=135.82 Aligned_cols=157 Identities=22% Similarity=0.244 Sum_probs=138.8
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
....+.++..+|.+|...|++++|+.++++++.+.... .+....+.++.++|.+|..+|++++|+.+|++++.+....
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 45667899999999999999999999999999998774 3445667899999999999999999999999999998764
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
.+.+..+.++.++|.++..+|++++|+.++++++++.... .+....+.++..+|.+|..+|++++|+.++++++++
T Consensus 83 --~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 83 --KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455668899999999999999999999999999998765 355677889999999999999999999999999988
Q ss_pred HHH
Q 001110 358 LRA 360 (1155)
Q Consensus 358 ~kk 360 (1155)
.++
T Consensus 159 ~~~ 161 (164)
T 3ro3_A 159 SRE 161 (164)
T ss_dssp HTT
T ss_pred HHH
Confidence 653
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.60 E-value=1e-13 Score=145.16 Aligned_cols=199 Identities=11% Similarity=0.036 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 202 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 281 (1155)
Q Consensus 202 A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d 281 (1155)
..+++.+|.+|+..|++++|+.+|++++.+.. +....++.++|.+|..+|++++|+.+|++++.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 37899999999999999999999999999731 133467788999999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 282 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 282 hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp----~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+|....++.++|.+|..+|++++|+.+|++++++. ++++ ..+.++.++|.++..+|++++|+.+|++++++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 56678899999999999999999999999999875 3333 23467999999999999999999999999865
Q ss_pred HHHHcCCCCHH--HHHHHHHHHHHHHHhHHH--HHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 001110 358 LRAKLGPDDLR--TQDAAAWLEYFESKAFEQ--QEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 433 (1155)
Q Consensus 358 ~kk~lG~dh~~--t~~al~~La~l~qk~~e~--AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~y 433 (1155)
++. ...++..++.+....... .++...... . ...+.+......+.|++|+.+|
T Consensus 147 --------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~------------~---~~~~~~~~~~~~~~~~~A~~~~ 203 (228)
T 4i17_A 147 --------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASS------------N---KEKYASEKAKADAAFKKAVDYL 203 (228)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT------------C---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccC------------C---HHHHHHHHHHHHHHHHHHHHHH
Confidence 233 344555555444333322 111111100 0 1223444556778899999999
Q ss_pred HHHHHHhhhh
Q 001110 434 TYVAKVKGNF 443 (1155)
Q Consensus 434 eKALeL~~kl 443 (1155)
++++++.+..
T Consensus 204 ~~a~~l~p~~ 213 (228)
T 4i17_A 204 GEAVTLSPNR 213 (228)
T ss_dssp HHHHHHCTTC
T ss_pred HHHhhcCCCC
Confidence 9999997654
No 71
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.60 E-value=1.2e-14 Score=171.31 Aligned_cols=134 Identities=15% Similarity=0.166 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+...++..+.....|+|++|+.+|+++|++.++++|++|+.++.++++||.+|..+|+|++|+.+++++|.+.++.+|.+
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 377 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY 377 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444555555567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 293 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA 293 (1155)
||+++..|++||.+|..+|+|++|+.+|++|+++++..+|++||.+..++.+|.
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999888765
No 72
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=4.4e-14 Score=163.66 Aligned_cols=184 Identities=11% Similarity=0.054 Sum_probs=155.9
Q ss_pred CChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001110 155 CSSADGRQLLESSKTALDKGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 233 (1155)
Q Consensus 155 ~~s~~A~~Ll~lG~~yl~~Gd-yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e 233 (1155)
........++.+|.++...|+ +++|+.+|++++.+ +|....+|+++|.+|..+|++++|+.+|++||.+
T Consensus 126 l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-- 195 (382)
T 2h6f_A 126 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-- 195 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--
T ss_pred hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 334457788999999999997 99999999999998 6788899999999999999999999999999997
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCChHHH-----HH
Q 001110 234 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVA-----LR 307 (1155)
Q Consensus 234 r~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~-lG~~deA-----le 307 (1155)
+|....+|+++|.++..+|++++|+.+|++++.+ +|....+|+++|.+|.. .|.+++| +.
T Consensus 196 ------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~ 261 (382)
T 2h6f_A 196 ------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 261 (382)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred ------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 5777899999999999999999999999999997 56678899999999999 5555888 58
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001110 308 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME--AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 308 ~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lG--dyeeAle~lkkALeI~kk~lG~dh~~t~~al~~L 376 (1155)
+|++|+++. +....+|+++|.+|..+| ++++|+++++++ ...+++......+..+
T Consensus 262 ~~~~Al~l~--------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~------~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 262 YTLEMIKLV--------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL------QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHHHHS--------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH------TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHC--------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh------ccCCCCHHHHHHHHHH
Confidence 999999874 444578999999999988 689998877654 2356666555554443
No 73
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.58 E-value=1.1e-13 Score=140.69 Aligned_cols=173 Identities=9% Similarity=-0.019 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..+..+|.++...|++++|+.+|++++.++... .+.+..+.++.++|.+|..+|++++|+.++++++.+.++. +
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~ 100 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-P 100 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C
Confidence 357788999999999999999999999999998765 4567788999999999999999999999999999998853 3
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.+......++.++|.++..+|++++|+.++++++.+.... .+....+.++.++|.++..+|++++|+.+|++|+++.+
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 2333778899999999999999999999999999987763 23445677889999999999999999999999999997
Q ss_pred HhcCCCcHHHHHHHHHHHHH
Q 001110 318 RLLGPDHIQTAASYHAIAIA 337 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~i 337 (1155)
+. .+....+.++..++.+
T Consensus 179 ~~--~~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 179 EL--EDSEAVNELMTRLNGL 196 (203)
T ss_dssp HT--TCHHHHHHHHHHHHTT
T ss_pred Hc--CCHHHHHHHHhcccch
Confidence 75 3444455555555544
No 74
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=2.9e-14 Score=151.69 Aligned_cols=187 Identities=17% Similarity=0.146 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..++.+|.++...|++++|+.+|++++++ ++....++..+|.+|..+|++++|+.+|++++.+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------- 137 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------- 137 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--------
Confidence 566889999999999999999999999987 4556679999999999999999999999999875
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN---VHVALRYLHKALKCN 316 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~---~deAle~lekALei~ 316 (1155)
.+....++.++|...+..+++++|+.+|++++.+ .|....++..+|.++..+|+ +++|+.+|++++++.
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 138 TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 4566788999995555567999999999999986 34446788999999999999 999999999999998
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 001110 317 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 375 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~ 375 (1155)
.............++..+|.+|..+|++++|+.+|++++++ .++++.....+..
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL-----DPTNKKAIDGLKM 263 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHC-
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CccHHHHHHHhhh
Confidence 55422212335678999999999999999999999999976 5777766555443
No 75
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.58 E-value=2.6e-14 Score=168.31 Aligned_cols=124 Identities=15% Similarity=0.057 Sum_probs=119.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001110 212 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 291 (1155)
Q Consensus 212 y~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~n 291 (1155)
....|+|++|+.+|+++|++.++.+|.+|+.++.++++||.+|..+|+|++|+.+|+++|++.++.+|++||+++..|+|
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001110 292 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 335 (1155)
Q Consensus 292 LA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA 335 (1155)
||.+|..+|+|++|+.+|++|+++.+..+|++|+.+..++.+|.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999998887764
No 76
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.58 E-value=6.4e-14 Score=146.75 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH----------------HHHHHHhcCCHHHHHH
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSL----------------LAVVLYHTGDFNQATI 223 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~n----------------LG~vy~~~GdydeAle 223 (1155)
+..++..|..++..|++++|+.+|++++++ +|....+++. +|.+|..+|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 466888999999999999999999999988 6777788888 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCh-
Q 001110 224 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV- 302 (1155)
Q Consensus 224 ~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~- 302 (1155)
+|++++.+ +|....++.++|.+|..+|++++|+.+|++++.+ +|....+++++|.+|..+|+.
T Consensus 76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence 99999997 4667889999999999999999999999999996 466678999999999876643
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 303 -HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 303 -deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+.+...|.+++. .. .....++++|.++..+|+|++|+.+|++|+++
T Consensus 140 ~~~~~~~~~~~~~-------~~--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 140 KKKLETDYKKLSS-------PT--KMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHC---C-------CC--HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhC-------CC--chhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344555554432 22 23346778899999999999999999999976
No 77
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.58 E-value=9.3e-14 Score=158.64 Aligned_cols=236 Identities=8% Similarity=-0.028 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 232 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~---------d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~ 232 (1155)
..++.|+.+...|+|++|++.|.++++........ .......++..||.+|..+|++++|++++++++.+.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999864332100 012345678999999999999999999999999987
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 001110 233 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 312 (1155)
Q Consensus 233 er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekA 312 (1155)
... .+......++.+++.++...|++++|+.++++++.+.... .+....+.++.+||.+|..+|+|++|+.+++++
T Consensus 86 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 86 MQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 653 2223445678889999999999999999999999998774 346678899999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 001110 313 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN 392 (1155)
Q Consensus 313 Lei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~ 392 (1155)
+...... .+....+.++..+|.+|..+|+|++|..++++++.+......+ +.
T Consensus 162 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~------------------------ 213 (434)
T 4b4t_Q 162 LREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP--TQ------------------------ 213 (434)
T ss_dssp HHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HH------------------------
T ss_pred HHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc--hH------------------------
Confidence 9887654 4567788999999999999999999999999999876543211 10
Q ss_pred cCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 393 GTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 393 ~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
....++..+|.++...|+|.+|..+|.++++......
T Consensus 214 ---------------~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 214 ---------------TVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLT 250 (434)
T ss_dssp ---------------HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 1334677788889999999999999999999887765
No 78
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=5.8e-14 Score=154.17 Aligned_cols=198 Identities=10% Similarity=-0.022 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 200 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 279 (1155)
Q Consensus 200 ~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G 279 (1155)
.....+...+..+...|+|++|+.++++++...... .+.......+..+|.++...|++++|+.+|++++.+....
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-- 148 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-- 148 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--
Confidence 344566778889999999999999999998863210 0112345567789999999999999999999999864331
Q ss_pred CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 001110 280 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 359 (1155)
Q Consensus 280 ~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~k 359 (1155)
.+....+.+++++|.+|..+|++++|+.+|++|+++.+... .+......+++++|.+|..+|+|++|+.++++++++..
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC-ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 23344678999999999999999999999999999887652 22222347899999999999999999999999998753
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 001110 360 AKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVST-LKRKTYVAK 438 (1155)
Q Consensus 360 k~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeA-le~yeKALe 438 (1155)
.. ........++..+|.+|..+|++++| ..+|++|+.
T Consensus 228 ~~------------------------------------------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 228 RI------------------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HT------------------------------------------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hc------------------------------------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 21 11224567899999999999999999 888999999
Q ss_pred Hhhhhc
Q 001110 439 VKGNFY 444 (1155)
Q Consensus 439 L~~kl~ 444 (1155)
+.....
T Consensus 266 ~~~~~~ 271 (293)
T 2qfc_A 266 FFDILE 271 (293)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 998766
No 79
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.57 E-value=1.8e-13 Score=150.22 Aligned_cols=193 Identities=11% Similarity=0.009 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 202 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT---MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 202 A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~---a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
...+...+..+...|+|++|+.++++++... ...+.. ...+..+|.++...+++++|+.+|++|+.+...
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-- 147 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-- 147 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc--
Confidence 3445556778889999999999999998742 222332 445667999999999999999999999985322
Q ss_pred CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 279 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
..+....+.+++++|.+|..+|++++|+.+|++|+++.+.. ..+....+.+++++|.+|..+|+|++|+.++++|+++.
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 12333457789999999999999999999999999988765 34667788899999999999999999999999999876
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 001110 359 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGR-NVSTLKRKTYVA 437 (1155)
Q Consensus 359 kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGd-yeeAle~yeKAL 437 (1155)
.+. .....++.++..+|.+|..+|+ +++|+.+|++|+
T Consensus 227 ~~~------------------------------------------~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 227 CRI------------------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHT------------------------------------------TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHc------------------------------------------CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 432 1122457789999999999995 699999999999
Q ss_pred HHhhhhc
Q 001110 438 KVKGNFY 444 (1155)
Q Consensus 438 eL~~kl~ 444 (1155)
.+.....
T Consensus 265 ~i~~~~~ 271 (293)
T 3u3w_A 265 FFFDILE 271 (293)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9999876
No 80
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.57 E-value=1.5e-13 Score=132.25 Aligned_cols=155 Identities=23% Similarity=0.217 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..++..|++++|+.++.+++++.... .+....+.++..+|.+|..+|++++|+.++++++.+....
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-- 82 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-- 82 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--
Confidence 457789999999999999999999999999998775 3445667899999999999999999999999999998774
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.+......++.++|.++..+|++++|+.++++++.+.... .+.+....++.++|.+|..+|++++|+.++++++++.+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3455668899999999999999999999999999998764 24567788999999999999999999999999999875
Q ss_pred H
Q 001110 318 R 318 (1155)
Q Consensus 318 k 318 (1155)
+
T Consensus 161 ~ 161 (164)
T 3ro3_A 161 E 161 (164)
T ss_dssp T
T ss_pred H
Confidence 3
No 81
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.57 E-value=1.9e-14 Score=169.32 Aligned_cols=140 Identities=10% Similarity=0.052 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..++.....+..+|+|++|+.+|+++|++.++++|.+|+.++.++.+||.+|..+|+|++|+.+++++|.++++.+|.+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 34555556667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 299 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l 299 (1155)
||.++..+++||.+|..+|+|++|+.+|++|+++++..+|++||.+..++.+|+.+...+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887654
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.57 E-value=1.2e-13 Score=148.30 Aligned_cols=186 Identities=15% Similarity=0.084 Sum_probs=152.7
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
.+..+..++.+|..++..|+|++|+.+|++++... ++++....+++.+|.+|+.+|+|++|+.+|++++.+
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---- 81 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI---- 81 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----
Confidence 45667899999999999999999999999998862 445556889999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHH--------CCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--------------HHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEG--------LGNVHVALRYLHKALKCNQRLLGPDHIQTAASY--------------HAIA 335 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~--------lG~~deAle~lekALei~ek~lG~dhp~~a~a~--------------~nLA 335 (1155)
.++++....+++.+|.+|.. +|++++|+.+|+++++.. +++.....++ +.+|
T Consensus 82 -~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 82 -YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp -CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999999 999999999999999875 4444444444 8999
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHH
Q 001110 336 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDY 415 (1155)
Q Consensus 336 ~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~ 415 (1155)
.+|..+|++++|+.+|+++++.. ++++. ..+++..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~----------------------------------------~~~a~~~ 190 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAY-----PDTPW----------------------------------------ADDALVG 190 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TTSTT----------------------------------------HHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHC-----CCCch----------------------------------------HHHHHHH
Confidence 99999999999999999988652 33222 2234455
Q ss_pred HHHHHHHc----------CChHHHHHHHHHHHHHhhhh
Q 001110 416 INPSHDTK----------GRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 416 Lg~~y~~q----------GdyeeAle~yeKALeL~~kl 443 (1155)
+|.+|..+ |++++|+.+|+++++..+..
T Consensus 191 l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 191 AMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 55555544 89999999999999887653
No 83
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=2.2e-13 Score=143.48 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...++.+|.++...|++++|+.+|++++++ .+....++..+|.+|..+|++++|+.++++++. ...
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~ 136 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTL 136 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------Ccc
Confidence 567888999999999999999999999987 355678899999999999999999999999987 124
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
.+....++..+|.+|..+|++++|+.+|++++.+ .|....++..+|.+|..+|++++|+.+|+++++..
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 205 (252)
T 2ho1_A 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG--- 205 (252)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 5677889999999999999999999999999986 23346788999999999999999999999988743
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHH
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 369 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t 369 (1155)
+ ....++..++.++...|++++|..++++++++ .++++..
T Consensus 206 --~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~ 245 (252)
T 2ho1_A 206 --G---QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL-----YPGSLEY 245 (252)
T ss_dssp --C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSHHH
T ss_pred --c---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCHHH
Confidence 2 23466888999999999999999999999875 4666544
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.56 E-value=3.4e-13 Score=142.54 Aligned_cols=177 Identities=14% Similarity=0.107 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..++.+|..++..|+|++|+..|++++... +..+....+++.+|.+|+.+|++++|+..|++++... ++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cC
Confidence 4578899999999999999999999999862 3455667899999999999999999999999999873 45
Q ss_pred ChhhHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------
Q 001110 240 HPDTMKSYGDLAVFYYR------------------LQHTELALKYVKRALYLLHLTCGPSHPNTAA-------------- 287 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~------------------lG~yeeAle~yekALei~e~l~G~dhp~~a~-------------- 287 (1155)
++....+++.+|.+|.. +|++++|+.+|++++.. .++++....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHH
Confidence 66666788999999886 57899999999998875 234443322
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 288 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 288 a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
....+|.+|..+|++++|+..|+++++.. ++.+....+++.+|.+|..+|++++|+.+++++..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 23678999999999999999999999886 56677778999999999999999999999886653
No 85
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.55 E-value=3.6e-14 Score=166.92 Aligned_cols=132 Identities=17% Similarity=0.064 Sum_probs=126.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 001110 210 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 289 (1155)
Q Consensus 210 ~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~ 289 (1155)
.-+..+|+|++|+.++++++++.++.+|.+|+.++.++.+||.+|..+|+|++|+.+++++|.+++..+|++||.++..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc
Q 001110 290 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 341 (1155)
Q Consensus 290 ~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~l 341 (1155)
++||.+|..+|++++|+.+|++|+++.+..+|++|+.+..++.+|+.+...+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988654
No 86
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=9.5e-13 Score=134.70 Aligned_cols=177 Identities=15% Similarity=0.011 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-GDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~-GdydeAle~~eKALei~er~lG~ 238 (1155)
...++.+|.++...|++++|+.+|.+++.+ .+....++..+|.+|... |++++|+.++++++. ..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~ 107 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSI--------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DP 107 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------ST
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------Cc
Confidence 457788999999999999999999999987 455677899999999999 999999999999987 13
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
..+....++.++|.+|...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++++.
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 177 (225)
T 2vq2_A 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-- 177 (225)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 45667889999999999999999999999999886 23346788999999999999999999999999875
Q ss_pred hcCC-CcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 001110 319 LLGP-DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD 371 (1155)
Q Consensus 319 ~lG~-dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~ 371 (1155)
+ .. ...+..++.++...|++++|..+++.+... .++++....
T Consensus 178 ---~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~ 220 (225)
T 2vq2_A 178 ---EVLQ---ADDLLLGWKIAKALGNAQAAYEYEAQLQAN-----FPYSEELQT 220 (225)
T ss_dssp ---CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred ---CCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 2 32 345677889999999999999998877654 466665543
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=2.4e-13 Score=134.26 Aligned_cols=173 Identities=13% Similarity=0.163 Sum_probs=146.7
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
...+.++..+|.++...|++++|+.++++++.. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD----- 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 345678999999999999999999999998764 3445788999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 279 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
.|....++.++|.++...|++++|+.+|++++.+. +....++..+|.++...|++++|+.++++++...
T Consensus 72 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 72 ---APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 34446788999999999999999999999999874 2235678899999999999999999999887541
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001110 359 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 438 (1155)
Q Consensus 359 kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALe 438 (1155)
+++ ..++..+|.++..+|++++|+.+|+++++
T Consensus 141 -----~~~-------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 141 -----PNE-------------------------------------------GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp -----TTC-------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----ccc-------------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 23567889999999999999999999999
Q ss_pred Hhhhh
Q 001110 439 VKGNF 443 (1155)
Q Consensus 439 L~~kl 443 (1155)
+.+..
T Consensus 173 ~~~~~ 177 (186)
T 3as5_A 173 LDEGA 177 (186)
T ss_dssp HHHCC
T ss_pred cCCCc
Confidence 87653
No 88
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.5e-12 Score=148.63 Aligned_cols=202 Identities=10% Similarity=0.030 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
...+..+|.+|...|++++|++++.+++.+.... ........++..+|.++...|++++|+.++++++.+.... .+
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 130 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KR 130 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--Cc
Confidence 4567899999999999999999999999987654 2233445677889999999999999999999999998775 45
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
....+.++.+||.+|..+|+|++|+.++++++...... .+++..+.++.++|.+|..+|++++|..+|++++.+....
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 56778999999999999999999999999999876553 4577889999999999999999999999999999988665
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHH
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 368 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~ 368 (1155)
+..+...+..+..+|.++...++|.+|..+|.++++.+.......+..
T Consensus 209 -~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~ 256 (434)
T 4b4t_Q 209 -YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYE 256 (434)
T ss_dssp -CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHH
T ss_pred -CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 333455678899999999999999999999999999988876655544
No 89
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=2.7e-12 Score=136.11 Aligned_cols=176 Identities=13% Similarity=0.035 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
...+..++.+|.+++..|++++|+.+|++++.+ ++....++..+|.+|...|++++|+.+|++++.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 106 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 106 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----
Confidence 356788999999999999999999999999987 4566789999999999999999999999999997
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC- 315 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei- 315 (1155)
.+....++.++|.+|..+|++++|+.+|++++.+ .++++ ..+..++ ++...|++++|+.+|++++..
T Consensus 107 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~---~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 107 ---DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDP---FRSLWLY-LAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHH-HHHHHHCHHHHHHHHHHHHHHS
T ss_pred ---CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCh---HHHHHHH-HHHHhcCHHHHHHHHHHHHhcC
Confidence 3445678999999999999999999999999986 23333 2222233 335568888888888766543
Q ss_pred -------------------------HHHhcCCC---cHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 316 -------------------------NQRLLGPD---HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 316 -------------------------~ek~lG~d---hp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+.+.+... .+....+++.+|.+|..+|++++|+.+|++++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 22221111 0122577888888888889999998888888864
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.50 E-value=2.6e-14 Score=142.59 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=123.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 001110 166 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 245 (1155)
Q Consensus 166 lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ 245 (1155)
+|.++..+|++++|+..+++++.. .|....+++.||.+|+.+|+|++|+.+|++++.+ +|....
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~ 66 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK 66 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 577788889999999999998764 5677788999999999999999999999999998 567788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHH-HHHHHHHHHHhcCCCc
Q 001110 246 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY-LHKALKCNQRLLGPDH 324 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~-lekALei~ek~lG~dh 324 (1155)
++.++|.+|..+|++++|+.+|++++++ +|....+++++|.+|..+|++++|... +++|+++. +++
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-----P~~ 133 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-----PGS 133 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-----TTC
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-----cCC
Confidence 9999999999999999999999999987 455678899999999999999887665 68999875 444
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 001110 325 IQTAASYHAIAIALSLMEA 343 (1155)
Q Consensus 325 p~~a~a~~nLA~iy~~lGd 343 (1155)
..++..++.++..+|+
T Consensus 134 ---~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 ---PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp ---HHHHHHHHHHHHTCCC
T ss_pred ---HHHHHHHHHHHHHhCc
Confidence 4567778888888775
No 91
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.50 E-value=1.2e-12 Score=145.07 Aligned_cols=204 Identities=9% Similarity=0.013 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
....+..++..+...+++++|+..+++++.. ..+|....++..+|.+|...|++++|+.++++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----------- 126 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----------- 126 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----------
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----------
Confidence 4556666777777777888888877776643 12455666778888888888888888877765
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
+....++..+|.+|..+|++++|+++|++++.+ .+++.. ......+..++...|++++|+.+|+++++..
T Consensus 127 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~-~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-- 196 (291)
T 3mkr_A 127 --GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDATL-TQLATAWVSLAAGGEKLQDAYYIFQEMADKC-- 196 (291)
T ss_dssp --CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--
Confidence 233457777888888888888888888887765 222211 1111111123334577888888888877753
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCc
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 398 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~ 398 (1155)
+....+++++|.+|..+|++++|+.+|++++.+ .++++
T Consensus 197 ------p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~------------------------------- 234 (291)
T 3mkr_A 197 ------SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHP------------------------------- 234 (291)
T ss_dssp ------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------------------------------
T ss_pred ------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------------------------------
Confidence 234567777888888888888888888877754 34443
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHhhhh
Q 001110 399 ASIASKGHLSVSDLLDYINPSHDTKGRNVS-TLKRKTYVAKVKGNF 443 (1155)
Q Consensus 399 ~~~a~~~~~svaelL~~Lg~~y~~qGdyee-Ale~yeKALeL~~kl 443 (1155)
+++.++|.++..+|++.+ |..++++++++.+..
T Consensus 235 ------------~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 235 ------------ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp ------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred ------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 345667777777787765 457777777776653
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.47 E-value=1.2e-13 Score=170.95 Aligned_cols=162 Identities=14% Similarity=-0.027 Sum_probs=138.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 001110 171 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 250 (1155)
Q Consensus 171 l~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nL 250 (1155)
+..|++++|++.|+++++......+..++..+.++..+|.+|..+|++++|+..|++++++. |+...+++++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--------GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------cchHHHHHHH
Confidence 67899999999999998322222223467788899999999999999999999999999973 5567899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 001110 251 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 330 (1155)
Q Consensus 251 A~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a 330 (1155)
|.+|..+|++++|+.+|++|+++ +|....+++++|.+|..+|++++ +.+|++|+++. +....+
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--------P~~~~a 536 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--------DGVISA 536 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--------TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--------CchHHH
Confidence 99999999999999999999997 35557789999999999999999 99999999874 445578
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 331 YHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 331 ~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
++++|.+|..+|++++|+.+|++++++
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 999999999999999999999988754
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.45 E-value=6.4e-12 Score=132.74 Aligned_cols=180 Identities=18% Similarity=0.146 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 202 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 281 (1155)
Q Consensus 202 A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d 281 (1155)
+..++.+|..++..|++++|+..|++++... ++++....+++.+|.+|+.+|++++|+..|++++.. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence 4678999999999999999999999999863 445556789999999999999999999999999986 456
Q ss_pred ChhHHHHHHHHHHHHHH------------------CCChHHHHHHHHHHHHHHHHhcCCCcHHHH--------------H
Q 001110 282 HPNTAATYINVAMMEEG------------------LGNVHVALRYLHKALKCNQRLLGPDHIQTA--------------A 329 (1155)
Q Consensus 282 hp~~a~a~~nLA~iy~~------------------lG~~deAle~lekALei~ek~lG~dhp~~a--------------~ 329 (1155)
++....+++.+|.++.. +|++++|+..|+++++.. +++.... .
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 67777788999999876 678999999999998764 3333222 2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcH
Q 001110 330 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSV 409 (1155)
Q Consensus 330 a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~sv 409 (1155)
..+.+|.+|..+|++++|+..|+++++.+ ++++ ..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~----------------------------------------~~ 183 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQ----------------------------------------AT 183 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSH----------------------------------------HH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCC----------------------------------------cc
Confidence 23578888999999999999998888652 2222 12
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 410 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 410 aelL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
.+++..+|.+|..+|++++|+.+++++....+
T Consensus 184 ~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 184 RDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 35678899999999999999999987765433
No 94
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=3.1e-12 Score=137.63 Aligned_cols=192 Identities=17% Similarity=0.119 Sum_probs=149.8
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLL 274 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~----lG~yeeAle~yekALei~ 274 (1155)
+..+.+++.+|.+|...|++++|+.+|+++++. ....++.+||.+|.. .+++++|+.+|++++++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~- 71 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL- 71 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-
Confidence 345678999999999999999999999999871 234688999999999 99999999999999875
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChhH
Q 001110 275 HLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPL 346 (1155)
Q Consensus 275 e~l~G~dhp~~a~a~~nLA~iy~~----lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~----lGdyee 346 (1155)
+ ...+++++|.+|.. .+++++|+.+|++|++.. ...++++||.+|.. .+++++
T Consensus 72 ----~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 72 ----N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----------YAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp ----T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ----C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----------CccHHHHHHHHHHcCCCcccCHHH
Confidence 1 36788999999999 999999999999998741 34678999999999 999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH------HhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHH
Q 001110 347 SVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES------KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH 420 (1155)
Q Consensus 347 Ale~lkkALeI~kk~lG~dh~~t~~al~~La~l~q------k~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y 420 (1155)
|+.+|+++++. + +.. +...++.+.. +..+.+.......... .....+..+|.+|
T Consensus 133 A~~~~~~a~~~-----~--~~~---a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~ 192 (273)
T 1ouv_A 133 AVEYFTKACDL-----N--DGD---GCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMY 192 (273)
T ss_dssp HHHHHHHHHHT-----T--CHH---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----C--cHH---HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHH
Confidence 99999999864 2 333 2333333332 2333333322211110 1246788999999
Q ss_pred HH----cCChHHHHHHHHHHHHHh
Q 001110 421 DT----KGRNVSTLKRKTYVAKVK 440 (1155)
Q Consensus 421 ~~----qGdyeeAle~yeKALeL~ 440 (1155)
.. .+++++|+.+|++++++.
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCccHHHHHHHHHHHHhCC
Confidence 99 999999999999999763
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.44 E-value=2.7e-13 Score=135.20 Aligned_cols=141 Identities=13% Similarity=0.054 Sum_probs=116.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001110 207 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 286 (1155)
Q Consensus 207 nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a 286 (1155)
.||.++..+|++++|+..+++++.. .+.....+++||.+|+.+|+|++|+++|++++.+ +|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 5899999999999999999999875 3566778899999999999999999999999987 45667
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHH-HHHHHHHHHHHcCCC
Q 001110 287 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH-EQTTLQILRAKLGPD 365 (1155)
Q Consensus 287 ~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~-lkkALeI~kk~lG~d 365 (1155)
.+++++|.+|..+|++++|+.+|++|+++. |....+++++|.+|..+|++++|... +++|+++ .|+
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~ 132 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPG 132 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STT
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcC
Confidence 899999999999999999999999999874 44567899999999999999876654 6899976 688
Q ss_pred CHHHHHHHHHH
Q 001110 366 DLRTQDAAAWL 376 (1155)
Q Consensus 366 h~~t~~al~~L 376 (1155)
++........|
T Consensus 133 ~~~~~~l~~~l 143 (150)
T 4ga2_A 133 SPAVYKLKEQL 143 (150)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88765554433
No 96
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.43 E-value=1.4e-11 Score=145.01 Aligned_cols=157 Identities=17% Similarity=0.122 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 001110 160 GRQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDI 231 (1155)
Q Consensus 160 A~~Ll~lG~~yl~----~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~----~GdydeAle~~eKALei 231 (1155)
+..++.+|..|+. .+++++|+.+|+++++. ..+.+++.||.+|.. .+++++|+.+|++|++.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5677788888887 78888888888888753 234678888888888 88888888888888753
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCChH
Q 001110 232 NERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVH 303 (1155)
Q Consensus 232 ~er~lG~D~p~~a~ay~nLA~iy~~----lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~----lG~~d 303 (1155)
....++++||.+|.. .+++++|+.+|+++.+. + ...++++||.+|.. .++++
T Consensus 109 ----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 109 ----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------G---RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp ----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred ----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 234667788888888 78888888888887653 1 24567788888887 77888
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHHH
Q 001110 304 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 304 eAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~----lGdyeeAle~lkkALe 356 (1155)
+|+.+|++|++. + ...++++||.+|.. .+++++|+.+|+++.+
T Consensus 169 ~A~~~~~~a~~~-----~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 169 MAREWYSKAAEQ-----G-----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-----C-----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 888888887763 1 24567778888877 7788888888877764
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.41 E-value=2.4e-12 Score=141.93 Aligned_cols=170 Identities=12% Similarity=0.030 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
.....++.+|..++..|++++|+.+|++++++ +|....+++.||.+|..+|++++|+.++++++..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~------ 180 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ------ 180 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh------
Confidence 34567899999999999999999999999988 6777889999999999999999999999998765
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.|+.......++..+...++.++|+..|++++.. +|+...+++++|.+|...|++++|+..|+++++..
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~- 249 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD- 249 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-
Confidence 2344566777888888999999999999999986 56667899999999999999999999999999874
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+++ ....++.+|+.+|..+|+.++|...|++++..
T Consensus 250 ----p~~-~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 250 ----LTA-ADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp ----TTG-GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ----ccc-ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 221 22577899999999999999999999999865
No 98
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.41 E-value=1.3e-11 Score=136.70 Aligned_cols=174 Identities=11% Similarity=-0.024 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
....++.+|.++...|++++|+.+|++ +....++..+|.+|..+|++++|+..|++++.+. +
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p 161 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-----E 161 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----c
Confidence 356688999999999999999999876 2445689999999999999999999999999872 2
Q ss_pred CChhhHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLA--VFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 239 D~p~~a~ay~nLA--~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
++ .......+ .++...|++++|+.+|++++.. +|....+++++|.++..+|++++|+.+|++|+++.
T Consensus 162 ~~---~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 162 DA---TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp TC---HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Cc---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22 21221122 3333458999999999999985 34457789999999999999999999999999874
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 001110 317 QRLLGPDHIQTAASYHAIAIALSLMEAYPL-SVQHEQTTLQILRAKLGPDDLRTQDAAA 374 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~~lGdyee-Ale~lkkALeI~kk~lG~dh~~t~~al~ 374 (1155)
|....++.++|.++..+|++.+ +..++++++++ .|+|+...+...
T Consensus 231 --------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~-----~P~~~~~~d~~~ 276 (291)
T 3mkr_A 231 --------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA-----HRSHPFIKEYRA 276 (291)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----CCCChHHHHHHH
Confidence 3445679999999999999976 56888888876 789998766544
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.40 E-value=1.8e-12 Score=155.76 Aligned_cols=153 Identities=13% Similarity=0.066 Sum_probs=121.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 001110 173 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 252 (1155)
Q Consensus 173 ~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~ 252 (1155)
.|++++|+.+|++++++ ++....++..+|.+|..+|++++|+.+|++++++ .+....++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 57899999999999876 5667789999999999999999999999999986 4566789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001110 253 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 332 (1155)
Q Consensus 253 iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~ 332 (1155)
+|..+|++++|+++|++++++ +|....+++++|.+|..+|++++|+.+|++++++. +....++.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~ 129 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYITA 129 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence 999999999999999999986 34557789999999999999999999999999874 33457889
Q ss_pred HHHHHHHHc---CChhHHHHHHHHHHHH
Q 001110 333 AIAIALSLM---EAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 333 nLA~iy~~l---GdyeeAle~lkkALeI 357 (1155)
++|.+|..+ |++++|+.+|+++++.
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999999999 9999999999999876
No 100
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=8.6e-12 Score=138.05 Aligned_cols=210 Identities=16% Similarity=0.076 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 001110 160 GRQLLESSKTAL-------DKGKL-------EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 225 (1155)
Q Consensus 160 A~~Ll~lG~~yl-------~~Gdy-------eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~ 225 (1155)
...++.+|..+. ..|++ ++|+..|++|+..+ .|....+|..+|.++...|++++|...|
T Consensus 50 ~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 122 (308)
T 2ond_A 50 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------LKKNMLLYFAYADYEESRMKYEKVHSIY 122 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-------TTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344455555444 46885 89999999998721 4667789999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCChH
Q 001110 226 QKALDINERELGLDHPDTMK-SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVH 303 (1155)
Q Consensus 226 eKALei~er~lG~D~p~~a~-ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~-lG~~d 303 (1155)
++++.+ .|.... ++.++|.++.++|++++|+.+|++|+.+ .+ ....++...|.+... .|+++
T Consensus 123 ~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~p---~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 123 NRLLAI--------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----AR---TRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHHTS--------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TT---CCTHHHHHHHHHHHHTSCCHH
T ss_pred HHHHhc--------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CC---CCHHHHHHHHHHHHHHcCCHH
Confidence 999985 233233 8999999999999999999999999874 22 224456556655443 79999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 001110 304 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA 383 (1155)
Q Consensus 304 eAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~ 383 (1155)
+|+.+|++++++. +....++..+|.++..+|++++|+.+|++++... .+.++
T Consensus 187 ~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~l~p~------------------ 238 (308)
T 2ond_A 187 VAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLPPE------------------ 238 (308)
T ss_dssp HHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--SSCGG------------------
T ss_pred HHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--CCCHH------------------
Confidence 9999999999986 2345778999999999999999999999887530 00000
Q ss_pred HHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 384 FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 384 ~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
....++..++..+...|++++|...+++++++.+...
T Consensus 239 ------------------------~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 239 ------------------------KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp ------------------------GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 1234566677777889999999999999999988644
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.40 E-value=9.4e-13 Score=162.97 Aligned_cols=172 Identities=16% Similarity=0.072 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
...+..++.+|..++..|++++|+..|++++++ +|....+++++|.+|..+|++++|+.+|++|+.+
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----- 496 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT----- 496 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 445677899999999999999999999999987 4677889999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.|+...+++++|.+|..+|++++ +++|++|+++ +|....+++++|.+|..+|++++|+.+|++|+++.
T Consensus 497 ---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 497 ---FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS 564 (681)
T ss_dssp ---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS
T ss_pred ---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC
Confidence 46667889999999999999999 9999999986 45667799999999999999999999999998763
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHHHHH
Q 001110 317 QRLLGPDHIQTAASYHAIAIALSLMEAYPLS-VQHEQTTLQILRAK 361 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeA-le~lkkALeI~kk~ 361 (1155)
+....+++++|.+|...++.++| ...+++|++.+...
T Consensus 565 --------P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 565 --------RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp --------TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred --------cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 56678899999999887876666 67777788777655
No 102
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.39 E-value=6.5e-11 Score=139.36 Aligned_cols=158 Identities=12% Similarity=0.043 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 001110 159 DGRQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALD 230 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~----~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~----~GdydeAle~~eKALe 230 (1155)
.+..++.+|..|.. .+++++|+.+|+++.+. ....+++.||.+|.. .+++++|+.+|++|++
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE 143 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 35678889999998 89999999999998763 235678889999988 8899999999999876
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCh
Q 001110 231 INERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNV 302 (1155)
Q Consensus 231 i~er~lG~D~p~~a~ay~nLA~iy~~----lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~----lG~~ 302 (1155)
. ....++.+||.+|.. .+++++|+++|+++++. .+ ..++++||.+|.. .+++
T Consensus 144 ~----------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 144 Q----------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCH
T ss_pred C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCH
Confidence 3 235678889999988 88999999999998763 12 5678889999988 8899
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHHH
Q 001110 303 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 303 deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~----lGdyeeAle~lkkALe 356 (1155)
++|+.+|+++++. . ...+++.||.+|.. .+++++|+.+|+++++
T Consensus 204 ~~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 204 AISAQWYRKSATS-------G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999988763 1 23567778888886 7788888888887764
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.38 E-value=3.6e-12 Score=123.74 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=103.9
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 197 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 197 d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
-+|..+.++.++|..|+..|+|++|+.+|++|+.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 37899999999999999999999999999999987 4667889999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 001110 277 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 338 (1155)
Q Consensus 277 l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy 338 (1155)
+|....+|+++|.+|..+|++++|+.+|++|+++. + ....++.+|+.++
T Consensus 77 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-----P---~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 -----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD-----P---SNEEAREGVRNCL 125 (126)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHC
T ss_pred -----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----c---CCHHHHHHHHHhc
Confidence 45567889999999999999999999999999974 3 3345666666653
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.38 E-value=2e-11 Score=127.68 Aligned_cols=171 Identities=11% Similarity=-0.003 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHHCCChHHHHH
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN----------------VAMMEEGLGNVHVALR 307 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~n----------------LA~iy~~lG~~deAle 307 (1155)
...+...|..++..|++++|+.+|++++.+ +|....+++. +|.+|..+|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456778899999999999999999999986 5667777888 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHH
Q 001110 308 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQ 387 (1155)
Q Consensus 308 ~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~A 387 (1155)
+|++++++. |....+++++|.+|..+|++++|+.+|++++++ .+++......+..+.+.. ...+.+
T Consensus 76 ~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~-~~~~~~ 141 (208)
T 3urz_A 76 FYKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNLAANIFLGNYYYLT-AEQEKK 141 (208)
T ss_dssp HHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHH-hHHHHH
Confidence 999999874 445678999999999999999999999999986 677776655554433222 222222
Q ss_pred HHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhh
Q 001110 388 EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 388 eAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl 443 (1155)
.+......... .......++.+|.++..+|+|++|+.+|++++++.+..
T Consensus 142 ~~~~~~~~~~~-------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 142 KLETDYKKLSS-------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHC---C-------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHhC-------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 22222221111 11223356778999999999999999999999998753
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.38 E-value=7e-12 Score=121.73 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=105.0
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001110 155 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 234 (1155)
Q Consensus 155 ~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er 234 (1155)
..+..+..+.++|..++.+|+|++|+.+|++++++ +|....+|.++|.+|..+|++++|+..|++|+.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 45677899999999999999999999999999988 5777889999999999999999999999999997
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 001110 235 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 296 (1155)
Q Consensus 235 ~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy 296 (1155)
++....+|.++|.+|..+|++++|+++|++++++ +|....++.+|+.++
T Consensus 77 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 -----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred -----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 4667889999999999999999999999999997 455566777777653
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.38 E-value=2.1e-12 Score=131.04 Aligned_cols=166 Identities=17% Similarity=0.072 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..++.+|..++..|++++|+.+|++++++ +|....++..+|.+|..+|++++|+.++++++... + +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p-~ 72 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-----Q-D 72 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-----C-C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-----C-C
Confidence 34678899999999999999999999987 57788899999999999999999999999987652 2 2
Q ss_pred hhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 241 PDTMKSYGDLAVFY-YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 241 p~~a~ay~nLA~iy-~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
+ ..+..++.+. ...++..+|+.+|++++.+ +|....+++++|.++...|++++|+.+|++++++.
T Consensus 73 ~---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--- 138 (176)
T 2r5s_A 73 N---SYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVN--- 138 (176)
T ss_dssp H---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred h---HHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---
Confidence 2 3333344332 2333445689999999986 45567889999999999999999999999998753
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
++. ....++.++|.++..+|++++|+.+|++++..
T Consensus 139 --p~~-~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 139 --LGA-QDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp --TTT-TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred --ccc-ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 111 12457889999999999999999999998853
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.36 E-value=1.3e-11 Score=129.97 Aligned_cols=163 Identities=15% Similarity=0.089 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHH
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG----DFNQATIYQQKALDINER 234 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G----dydeAle~~eKALei~er 234 (1155)
.+..++.+|.+|...+++++|+.+|+++++. ....++++||.+|.. + ++++|+.+|++|++.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--- 82 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--- 82 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---
Confidence 4678899999999999999999999999864 245789999999998 7 999999999999652
Q ss_pred hcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCChHHHH
Q 001110 235 ELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVAL 306 (1155)
Q Consensus 235 ~lG~D~p~~a~ay~nLA~iy~~----lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~----lG~~deAl 306 (1155)
....++++||.+|.. .+++++|+++|+++++. + .......++++||.+|.. .+++++|+
T Consensus 83 -------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~-~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 83 -------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----S-ESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp -------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----T-TSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred -------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----C-CCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 346789999999998 89999999999999863 1 111457889999999999 89999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHHH
Q 001110 307 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM-E-----AYPLSVQHEQTTLQI 357 (1155)
Q Consensus 307 e~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~l-G-----dyeeAle~lkkALeI 357 (1155)
.+|++|+++. . ...++++||.+|... | ++++|+.+|++|.+.
T Consensus 150 ~~~~~A~~~~------~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 150 EYFKGSSSLS------R---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHTS------C---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC------C---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 9999998751 1 124688999999864 3 899999999999865
No 108
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.35 E-value=1.3e-12 Score=147.76 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=132.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-------CChhhHH
Q 001110 173 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-------DHPDTMK 245 (1155)
Q Consensus 173 ~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~-------D~p~~a~ 245 (1155)
.+++++|+.+|.+++.. .+..+.++..+|.+|+.+|+|++|+.+|++|+.+....... ..+....
T Consensus 126 L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 45677788888877765 46778899999999999999999999999999984221000 0112268
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcH
Q 001110 246 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 325 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp 325 (1155)
+|.++|.+|..+|+|++|+.+|++++.+ +|....+++++|.+|..+|++++|+.+|++|+++. +
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P 261 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--------P 261 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------S
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------C
Confidence 9999999999999999999999999997 45567899999999999999999999999999874 3
Q ss_pred HHHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHH
Q 001110 326 QTAASYHAIAIALSLMEAYPLS-VQHEQTTLQIL 358 (1155)
Q Consensus 326 ~~a~a~~nLA~iy~~lGdyeeA-le~lkkALeI~ 358 (1155)
....++.+++.++..+|++++| ...|++.+..+
T Consensus 262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456889999999999999998 45666666544
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.33 E-value=1.8e-11 Score=128.76 Aligned_cols=178 Identities=12% Similarity=0.027 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 001110 177 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 256 (1155)
Q Consensus 177 eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~ 256 (1155)
.+|+.+|+++.+. ..+.+++.||.+|...+++++|+.+|++|++. ....++++||.+|..
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Confidence 3577888888754 34678999999999999999999999999873 236789999999998
Q ss_pred cC----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 001110 257 LQ----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTA 328 (1155)
Q Consensus 257 lG----~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~----lG~~deAle~lekALei~ek~lG~dhp~~a 328 (1155)
+ ++++|+++|+++++. ....++++||.+|.. .+++++|+.+|++|++.- ......
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~~ 125 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAAV 125 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcchH
Confidence 7 999999999999652 235688999999998 899999999999998642 111357
Q ss_pred HHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhc
Q 001110 329 ASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASK 404 (1155)
Q Consensus 329 ~a~~nLA~iy~~----lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~ 404 (1155)
.++++||.+|.. .+++++|+.+|++|.+. +.++
T Consensus 126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~------------------------------------- 162 (212)
T 3rjv_A 126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRTG------------------------------------- 162 (212)
T ss_dssp HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCTT-------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCCH-------------------------------------
Confidence 889999999999 88999999999998743 1111
Q ss_pred CCCcHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHHh
Q 001110 405 GHLSVSDLLDYINPSHDTK-G-----RNVSTLKRKTYVAKVK 440 (1155)
Q Consensus 405 ~~~svaelL~~Lg~~y~~q-G-----dyeeAle~yeKALeL~ 440 (1155)
..+..||.+|... | ++++|+.+|+++.+.-
T Consensus 163 ------~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 163 ------YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp ------HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 1355677777643 3 8999999999998763
No 110
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.32 E-value=2.2e-11 Score=118.07 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
.+.+.++.+||.+++.+|+|++|+.+|++|+++ +|....+|.++|.+|..+|+|++|+++|++++.+....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 456788999999999999999999999999997 46678899999999999999999999999999987653
Q ss_pred CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 279 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
...+...+.+|.++|.+|..+|++++|+.+|+++|...
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34556778899999999999999999999999999863
No 111
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=4.6e-11 Score=111.07 Aligned_cols=132 Identities=27% Similarity=0.459 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..++.+|..+...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 35678899999999999999999999876 3455678999999999999999999999999886 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+....++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+|++++++.
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 444678899999999999999999999999885 23335678899999999999999999999998753
No 112
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.31 E-value=5.4e-11 Score=115.26 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
.+.+.++.+||..++.+|+|++|+++|++|+++ +|....+|+++|.+|..+|+|++|+.+|++|+++....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 456788999999999999999999999999987 45667899999999999999999999999999987654
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
...+...+.+++++|.+|..+|++++|+.+|++++.+
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455677889999999999999999999999999875
No 113
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.31 E-value=3.6e-11 Score=111.76 Aligned_cols=131 Identities=27% Similarity=0.460 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 203 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 203 ~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dh 282 (1155)
.+++.+|.+|...|++++|+.++++++.. .+....++..+|.++...|++++|+.+|++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 46889999999999999999999999876 2445678899999999999999999999999875 2
Q ss_pred hhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 283 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 283 p~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+....++.++|.++...|++++|+.+|++++... + ....++..+|.++...|++++|+.++++++.+
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----P---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----C---CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 3345678899999999999999999999999864 2 23467888999999999999999999998865
No 114
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.30 E-value=6.8e-11 Score=115.75 Aligned_cols=139 Identities=13% Similarity=0.080 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..++..|++++|+.+|.+++.+ .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 35778999999999999999999999999987 4566789999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
.+....++.++|.+|..+|++++|+.+|++++.+ .+.++. +..+..++..+...|++++|+.++.++..+..
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 3556788999999999999999999999999986 233332 23345566668899999999999999988775
Q ss_pred H
Q 001110 318 R 318 (1155)
Q Consensus 318 k 318 (1155)
.
T Consensus 149 ~ 149 (166)
T 1a17_A 149 S 149 (166)
T ss_dssp H
T ss_pred c
Confidence 4
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.29 E-value=1e-10 Score=114.40 Aligned_cols=139 Identities=19% Similarity=0.266 Sum_probs=118.0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 200 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 279 (1155)
Q Consensus 200 ~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G 279 (1155)
..+..+..+|.+++..|++++|+.+|++++.+ .+....++.++|.++..+|++++|+.+|++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 45678999999999999999999999999987 3455788999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 001110 280 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 359 (1155)
Q Consensus 280 ~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~k 359 (1155)
+|....+++++|.+|..+|++++|+.+|++++++. +.+. .+..+..++..+...|++++|+.+++++..++.
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 34456789999999999999999999999999874 3333 233445666668899999999999999888765
Q ss_pred H
Q 001110 360 A 360 (1155)
Q Consensus 360 k 360 (1155)
.
T Consensus 149 ~ 149 (166)
T 1a17_A 149 S 149 (166)
T ss_dssp H
T ss_pred c
Confidence 4
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.28 E-value=8.6e-12 Score=125.97 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=95.8
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 197 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 197 d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
.+|....+++.+|.+++.+|++++|+.+|++++.+ +|....++.++|.+|..+|+|++|+.+|++++.+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--- 99 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--- 99 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence 36888999999999999999999999999999997 5777889999999999999999999999999997
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 277 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 277 l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+|....+++++|.+|..+|++++|+.+|++|+++.
T Consensus 100 -----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 100 -----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp -----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34456789999999999999999999999999975
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.27 E-value=4.1e-11 Score=123.29 Aligned_cols=140 Identities=16% Similarity=0.097 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..++..|++++|+.+|++++. + ...+++++|.+|..+|++++|+.+|++++.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 66 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR------ 66 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 3456788999999999999999999998841 1 3569999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHCCChHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC--------GPSHPNTAATYINVAMMEEGLGNVHVALRYL 309 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~--------G~dhp~~a~a~~nLA~iy~~lG~~deAle~l 309 (1155)
.+....+++++|.+|..+|++++|+.+|++++.+..... ....+....+++++|.+|..+|++++|+.+|
T Consensus 67 --~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 67 --DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 355678999999999999999999999999998632100 0023456789999999999999999999999
Q ss_pred HHHHHHH
Q 001110 310 HKALKCN 316 (1155)
Q Consensus 310 ekALei~ 316 (1155)
++++++.
T Consensus 145 ~~al~~~ 151 (213)
T 1hh8_A 145 ALATSMK 151 (213)
T ss_dssp HHHHTTC
T ss_pred HHHHHcC
Confidence 9999864
No 118
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=5.6e-11 Score=131.52 Aligned_cols=184 Identities=13% Similarity=0.038 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHH-HHHHhcCCCCh
Q 001110 177 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-------TGDF-------NQATIYQQKALD-INERELGLDHP 241 (1155)
Q Consensus 177 eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~-------~Gdy-------deAle~~eKALe-i~er~lG~D~p 241 (1155)
++|+..|++++.. +|....+|+.+|.++.. .|++ ++|+..|++|+. + .|
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LK 96 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TT
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------Cc
Confidence 6888999999987 46778899999998864 5886 888888888887 3 45
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
....++.++|.++..+|++++|...|++++.+ .+.++. .++.++|.++...|++++|+.+|++|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----- 164 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDA----- 164 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTST-----
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----
Confidence 66788999999999999999999999999974 233332 278999999999999999999999998753
Q ss_pred CCcHHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchh
Q 001110 322 PDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 400 (1155)
Q Consensus 322 ~dhp~~a~a~~nLA~iy~-~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~ 400 (1155)
+.. ..++...+.+.. ..|++++|+..|++++++. +++
T Consensus 165 p~~---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----p~~---------------------------------- 202 (308)
T 2ond_A 165 RTR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDI---------------------------------- 202 (308)
T ss_dssp TCC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----TTC----------------------------------
T ss_pred CCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc----------------------------------
Confidence 222 344555555543 3799999999999998763 222
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001110 401 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 439 (1155)
Q Consensus 401 ~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL 439 (1155)
.+++..++..+..+|++++|+.+|++++..
T Consensus 203 ---------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 203 ---------PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp ---------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred ---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 234566777788899999999999999985
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.25 E-value=4.3e-11 Score=143.73 Aligned_cols=157 Identities=13% Similarity=-0.002 Sum_probs=118.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001110 215 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 294 (1155)
Q Consensus 215 ~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~ 294 (1155)
.|++++|+.+|++++.+ .+....++.++|.+|..+|++++|+++|++++++ +|....++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 47899999999999886 3556789999999999999999999999999985 4555788999999
Q ss_pred HHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 001110 295 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 374 (1155)
Q Consensus 295 iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~ 374 (1155)
+|..+|++++|+.+|++++++. +....+++++|.+|..+|++++|+.+|++++++ .+++
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~-------- 124 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-----LPEE-------- 124 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC--------
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC--------
Confidence 9999999999999999999874 334678899999999999999999999998865 2222
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHhhhh
Q 001110 375 WLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTK---GRNVSTLKRKTYVAKVKGNF 443 (1155)
Q Consensus 375 ~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~q---GdyeeAle~yeKALeL~~kl 443 (1155)
..++..++.+|..+ |++++|+.+|++++++.+..
T Consensus 125 -----------------------------------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 125 -----------------------------------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred -----------------------------------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 23466788888889 99999999999999887653
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.24 E-value=4.6e-11 Score=122.90 Aligned_cols=137 Identities=15% Similarity=0.054 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 202 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 281 (1155)
Q Consensus 202 A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d 281 (1155)
+..++.+|.++...|++++|+.+|++++. . ...++.++|.+|..+|++++|+.+|++++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 45678999999999999999999998841 1 3568999999999999999999999999986
Q ss_pred ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 001110 282 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL--------GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 353 (1155)
Q Consensus 282 hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l--------G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkk 353 (1155)
+|....+++++|.+|..+|++++|+.+|++++++..... ....+....+++++|.+|..+|++++|+.+|++
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 345578899999999999999999999999998652210 002345678899999999999999999999999
Q ss_pred HHHH
Q 001110 354 TLQI 357 (1155)
Q Consensus 354 ALeI 357 (1155)
++++
T Consensus 147 al~~ 150 (213)
T 1hh8_A 147 ATSM 150 (213)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 9865
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.24 E-value=5.7e-11 Score=130.91 Aligned_cols=171 Identities=11% Similarity=-0.033 Sum_probs=144.1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
|.....+..+|..+...|++++|+..|++++.+ .|+...++.+||.+|..+|++++|+.+|++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----- 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----- 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence 455678899999999999999999999999997 4666789999999999999999999999998764
Q ss_pred CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 279 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
+|.........+..+...++.++|+..|+++++.. |....+++++|.+|...|++++|+..|+++++.
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~- 248 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------PEDAALATQLALQLHQVGRNEEALELLFGHLRX- 248 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-
Confidence 23445666777888889999999999999999874 445678999999999999999999999998865
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001110 359 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 438 (1155)
Q Consensus 359 kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALe 438 (1155)
.+++ ....++..++.++..+|+.++|...|++++.
T Consensus 249 ----~p~~-----------------------------------------~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 ----DLTA-----------------------------------------ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ----CTTG-----------------------------------------GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----cccc-----------------------------------------ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 2221 0124567889999999999999999999886
Q ss_pred H
Q 001110 439 V 439 (1155)
Q Consensus 439 L 439 (1155)
.
T Consensus 284 ~ 284 (287)
T 3qou_A 284 A 284 (287)
T ss_dssp H
T ss_pred H
Confidence 4
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.24 E-value=5.8e-11 Score=118.28 Aligned_cols=103 Identities=15% Similarity=0.036 Sum_probs=94.2
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
+|....+++.+|.+++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 84 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---- 84 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 6788899999999999999999999999999987 4666788999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 85 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 ----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp ----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445788999999999999999999999999987
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.24 E-value=1.1e-10 Score=131.87 Aligned_cols=145 Identities=16% Similarity=0.119 Sum_probs=121.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-------CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 228 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~-------d~p~~A~al~nLG~vy~~~GdydeAle~~eKA 228 (1155)
....+..++.+|..++..|+|++|+.+|++|+.+....... ..+..+.++.+||.+|..+|++++|+.+|++|
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567889999999999999999999999999984221000 01223689999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHH-HH
Q 001110 229 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA-LR 307 (1155)
Q Consensus 229 Lei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deA-le 307 (1155)
+.+ .|....+++++|.+|..+|++++|+.+|++++.+ +|....++.++|.++..+|++++| ..
T Consensus 223 l~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 223 LEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997 4667889999999999999999999999999987 345567899999999999999999 55
Q ss_pred HHHHHHHHH
Q 001110 308 YLHKALKCN 316 (1155)
Q Consensus 308 ~lekALei~ 316 (1155)
+|++++...
T Consensus 287 ~~~~~~~~~ 295 (336)
T 1p5q_A 287 LYANMFERL 295 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.22 E-value=2.8e-10 Score=108.14 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 200 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 279 (1155)
Q Consensus 200 ~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G 279 (1155)
..+..+..+|..++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 45678999999999999999999999999997 4566789999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 001110 280 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 339 (1155)
Q Consensus 280 ~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~ 339 (1155)
+|....+++++|.+|..+|++++|+.+|++++++..... ..+....++..++.+..
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQ 123 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHH
Confidence 355578899999999999999999999999999874431 22334455555555544
No 125
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.21 E-value=3.5e-10 Score=107.44 Aligned_cols=123 Identities=16% Similarity=0.064 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..++..|+|++|+.+|.+++++ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 35678899999999999999999999999988 5667889999999999999999999999999997
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 298 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~ 298 (1155)
.|....++.++|.+|..+|++++|+.+|++++.+..... +.|....++..++.+...
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence 456678999999999999999999999999999853321 235555666666666543
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.21 E-value=3.2e-10 Score=114.40 Aligned_cols=107 Identities=13% Similarity=0.030 Sum_probs=97.9
Q ss_pred hhhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001110 151 KQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 230 (1155)
Q Consensus 151 K~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALe 230 (1155)
+.....+.....++.+|..++..|+|++|+.+|++++.+ +|....+|++||.+|..+|+|++|+.+|++|+.
T Consensus 27 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 444556777889999999999999999999999999988 678888999999999999999999999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 231 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 231 i~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
+ .|+...+++++|.+|..+|++++|+.+|++++.+
T Consensus 99 l--------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 99 L--------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp H--------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8 4566778999999999999999999999999997
No 127
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=1.6e-09 Score=122.12 Aligned_cols=240 Identities=7% Similarity=0.010 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHH
Q 001110 158 ADGRQLLESSKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINER 234 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~Gdy-eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G--dydeAle~~eKALei~er 234 (1155)
..-..++...+..+..|.+ ++|+.++.++|.+ +|....+++..+.++..++ ++++++.++.++|.+
T Consensus 30 ~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--- 98 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--- 98 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---
Confidence 3345555666666777777 5899999999998 7888999999999999999 999999999999987
Q ss_pred hcCCCChhhHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChH--HH
Q 001110 235 ELGLDHPDTMKSYGDLAVFY----YRL---QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH--VA 305 (1155)
Q Consensus 235 ~lG~D~p~~a~ay~nLA~iy----~~l---G~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~d--eA 305 (1155)
+|....+++..+.++ ... +++++++.++.+++.. +|....+++..+.++..+|.++ ++
T Consensus 99 -----nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~E 165 (306)
T 3dra_A 99 -----NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKE 165 (306)
T ss_dssp -----CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHH
T ss_pred -----CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHH
Confidence 566678888888888 777 8999999999999985 5667889999999999999998 99
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC------hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 001110 306 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA------YPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 379 (1155)
Q Consensus 306 le~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGd------yeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l 379 (1155)
++++.++++.. +....++++.+.++...+. ++++++++++++.+ .+.+...+..+.++...
T Consensus 166 L~~~~~~i~~d--------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-----~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 166 LSFVDKVIDTD--------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK-----CPQNPSTWNYLLGIHER 232 (306)
T ss_dssp HHHHHHHHHHC--------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh-----CCCCccHHHHHHHHHHh
Confidence 99999999763 4455788889999998887 89999999988875 67777776666555433
Q ss_pred HHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001110 380 ESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 439 (1155)
Q Consensus 380 ~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL 439 (1155)
..........+........ ........++..++.+|.++|++++|+++|+.+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 233 FDRSITQLEEFSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp TTCCGGGGHHHHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCChHHHHHHHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 2221221221211111111 011234567889999999999999999999998753
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.18 E-value=3.8e-10 Score=104.89 Aligned_cols=125 Identities=19% Similarity=0.258 Sum_probs=107.8
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 197 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 197 d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
..+..+.++..+|.++...|++++|+.+|++++.+ .+....++..+|.++..+|++++|+.+|++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 34667789999999999999999999999999986 3445778999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChh
Q 001110 277 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 345 (1155)
Q Consensus 277 l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdye 345 (1155)
.|....+++.+|.++...|++++|+.+|++++++. + ....++..+|.++..+|+++
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p---~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-----P---DNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----T---TCHHHHHHHHHHHHHHTTCC
T ss_pred -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----c---cchHHHHHHHHHHHHHhcCC
Confidence 23446789999999999999999999999999874 2 23467888999999988863
No 129
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=4.1e-11 Score=121.45 Aligned_cols=166 Identities=11% Similarity=-0.018 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 203 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 203 ~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dh 282 (1155)
..+..+|..+...|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++.. .+ +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~ 72 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-D 72 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-C
Confidence 35778999999999999999999999987 3667889999999999999999999999998764 22 3
Q ss_pred hhHHHHHHHHHHHH-HHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 283 PNTAATYINVAMME-EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 283 p~~a~a~~nLA~iy-~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
+. .+..++.+. ...+...+|+.+|++++++. |....+++++|.+|...|++++|+.+|++++++
T Consensus 73 ~~---~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---- 137 (176)
T 2r5s_A 73 NS---YKSLIAKLELHQQAAESPELKRLEQELAAN--------PDNFELACELAVQYNQVGRDEEALELLWNILKV---- 137 (176)
T ss_dssp HH---HHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----
T ss_pred hH---HHHHHHHHHHHhhcccchHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----
Confidence 32 233334332 23334456899999999864 444678899999999999999999999988753
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001110 362 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 439 (1155)
Q Consensus 362 lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL 439 (1155)
.+++ ....++..++.++..+|++++|+..|++++..
T Consensus 138 -~p~~-----------------------------------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 138 -NLGA-----------------------------------------QDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp -CTTT-----------------------------------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred -Cccc-----------------------------------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 1211 01135678899999999999999999998764
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.17 E-value=2.3e-10 Score=107.45 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=106.6
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 197 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 197 d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
..+....++..+|.++...|++++|+.+|++++.+ .+....++.++|.+|..+|++++|+.+|++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--- 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 45677889999999999999999999999999875 3455788999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC
Q 001110 277 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA 343 (1155)
Q Consensus 277 l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGd 343 (1155)
.|....+++++|.+|..+|++++|+.+|++++++. +....++..++.++..+|+
T Consensus 80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGTHHHHHHHHHHHHHTC
T ss_pred -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhcC
Confidence 34456789999999999999999999999999874 3345678888998887764
No 131
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.16 E-value=2.1e-11 Score=143.83 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=124.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-------CChhhHH
Q 001110 173 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-------DHPDTMK 245 (1155)
Q Consensus 173 ~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~-------D~p~~a~ 245 (1155)
.++|++|+.+|.++++. .+..+.++..+|.+|+.+|+|++|+.+|++|+.+....... ..+....
T Consensus 247 l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 45666777777777765 46778899999999999999999999999999985321000 0112368
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcH
Q 001110 246 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 325 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp 325 (1155)
+|+++|.+|+.+|+|++|+.+|++++.+ +|....+|+++|.+|..+|++++|+.+|++|+++. +
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--------P 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--------P 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------C
Confidence 9999999999999999999999999996 35567899999999999999999999999999864 4
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHH
Q 001110 326 QTAASYHAIAIALSLMEAYPLSVQH 350 (1155)
Q Consensus 326 ~~a~a~~nLA~iy~~lGdyeeAle~ 350 (1155)
....++.+++.++..++++++|...
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999887753
No 132
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.16 E-value=1.1e-11 Score=147.33 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|..++.+|+|++|+.+|++|+++ ++..+.++.++|.+|..+|++++|+.+|++|+++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------- 69 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------- 69 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3455667788888999999999999999998 5777899999999999999999999999999986
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHCCChHHHHHHHH------
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM--EEGLGNVHVALRYLH------ 310 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~i--y~~lG~~deAle~le------ 310 (1155)
++....+++++|.+|..+|++++|+++|++++++ +|....++.+++.+ +..+|++++|+.+++
T Consensus 70 -~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~ 140 (477)
T 1wao_1 70 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 140 (477)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTT
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 4667889999999999999999999999999986 23334466777777 888999999999999
Q ss_pred -----HHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHcCChhH--HHHHHHHHHHHHHH
Q 001110 311 -----KALKCNQRLLGPDHIQ---TAASYHAIAIALSLMEAYPL--SVQHEQTTLQILRA 360 (1155)
Q Consensus 311 -----kALei~ek~lG~dhp~---~a~a~~nLA~iy~~lGdyee--Ale~lkkALeI~kk 360 (1155)
+++++.....+..+.. ....+..+...+...+.+.+ +..++.++.+++.+
T Consensus 141 ~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 141 DSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp TCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 6666655544554443 23334444555555555543 44477777777654
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.16 E-value=6.5e-10 Score=103.29 Aligned_cols=122 Identities=24% Similarity=0.304 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
...+..++.+|..++..|++++|+.+|++++.+ .+....++..+|.+|...|++++|+.++++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 75 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----
Confidence 445778899999999999999999999999987 4556789999999999999999999999999986
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCh
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV 302 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~ 302 (1155)
.+....++..+|.+|..+|++++|+.+|++++.+ .|....++..+|.++..+|++
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ---DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred ---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 3455778999999999999999999999999986 233456788999999988875
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.15 E-value=4.6e-10 Score=105.36 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=106.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
.......++.+|..++..|++++|+.+|++++++ .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---- 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence 3445788999999999999999999999999875 4556789999999999999999999999999987
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 001110 236 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 301 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~ 301 (1155)
.+....++.++|.+|..+|++++|+.+|++++.+ .|....++..++.++..+|+
T Consensus 80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 3456788999999999999999999999999986 35556788889999887764
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.15 E-value=2.4e-10 Score=127.17 Aligned_cols=214 Identities=11% Similarity=0.026 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHHH
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL-------AVVLYHTGDFNQATIYQQKALDIN 232 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nL-------G~vy~~~GdydeAle~~eKALei~ 232 (1155)
...+|..|.-+ ..+++.+|+++|.+++++ +|..+.+|..+ +.++..++++.+++..+++++.+.
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~ 77 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS 77 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45677777776 589999999999999998 78999999999 899999999999999999998865
Q ss_pred HHhcCCCCh-------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 001110 233 ERELGLDHP-------------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 299 (1155)
Q Consensus 233 er~lG~D~p-------------~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l 299 (1155)
-..++.... ..-.++..+|.++...|+|++|.+.|..++. ..|... .++.+|.++...
T Consensus 78 p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~l~~~~ 148 (282)
T 4f3v_A 78 MSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAVVYGAA 148 (282)
T ss_dssp GGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHHHHHHT
T ss_pred hhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHHHHHHc
Confidence 443332111 1245667789999999999999999987764 245556 889999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 001110 300 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 379 (1155)
Q Consensus 300 G~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l 379 (1155)
++|++|+.+|++++.. .+......++++||.++..+|++++|+.+|++++. ++..+.
T Consensus 149 ~r~~dA~~~l~~a~~~------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~----------- 205 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKW------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEA----------- 205 (282)
T ss_dssp TCHHHHHHHHTTGGGC------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTT-----------
T ss_pred CCHHHHHHHHHHhhcc------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCcc-----------
Confidence 9999999999866442 12222356899999999999999999999998752 121110
Q ss_pred HHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 380 ESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 380 ~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
...+.++.+|.++..+|+.++|...|++++...+.
T Consensus 206 ----------------------------~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 206 ----------------------------CARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp ----------------------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred ----------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 14456788999999999999999999999988664
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.14 E-value=4.8e-11 Score=122.92 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=116.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-------
Q 001110 170 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD------- 242 (1155)
Q Consensus 170 yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~------- 242 (1155)
....|+|++|.+.+...... .+..+..+..+|.+++..|+|++|+.+|++++.+.... .+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~ 83 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKK 83 (198)
T ss_dssp --------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHHH
Confidence 34567777777777655443 34567889999999999999999999999999874321 11000
Q ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 243 ---TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 243 ---~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
...++.++|.+|..+|++++|+.+|++++.+ +|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 152 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--- 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---
Confidence 1478999999999999999999999999986 34557889999999999999999999999999874
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChhHHH
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAYPLSV 348 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdyeeAl 348 (1155)
+....++..++.++..++++.++.
T Consensus 153 -----p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 153 -----PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334567888999998888887776
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.14 E-value=1.6e-10 Score=116.29 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=104.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 001110 170 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 249 (1155)
Q Consensus 170 yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~n 249 (1155)
+...|++++|+.+|++++.. +|....++..+|.+|...|++++|+.+|++++.+. +....++.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 34678999999999999987 46677899999999999999999999999999974 344678999
Q ss_pred HHHH-HHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 250 LAVF-YYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 250 LA~i-y~~lG~y--eeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+|.+ |...|++ ++|+.+|++++.+ +|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999 8899999 9999999999986 34456789999999999999999999999999874
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.14 E-value=4.2e-10 Score=112.29 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=95.0
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 197 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 197 d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
..+..+..+..+|.+|+..|+|++|+.+|++++.+ .+....++.++|.+|+.+|++++|+.+|++++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 35567889999999999999999999999999997 3556789999999999999999999999999987
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 277 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 277 l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 35557889999999999999999999999999986
No 139
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.14 E-value=7.9e-09 Score=133.57 Aligned_cols=224 Identities=16% Similarity=0.076 Sum_probs=152.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH------hcCC--------CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001110 166 SSKTALDKGKLEDAVTYGTKALAKLVA------VCGP--------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 231 (1155)
Q Consensus 166 lG~~yl~~GdyeeAle~~~eALel~e~------i~G~--------d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei 231 (1155)
.|.++...|.|++|..+|+++-..... ..+. .......+|+.+|.++...|++++|+..|.+|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 388888899999998888776322111 0011 11234678999999999999999999999776
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------cCC--------CChhHHHHHHH
Q 001110 232 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT------------CGP--------SHPNTAATYIN 291 (1155)
Q Consensus 232 ~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l------------~G~--------dhp~~a~a~~n 291 (1155)
+....|.++|.++..+|+|++|+++|+.|+...... .+. ..+.. ..+.+
T Consensus 1132 ----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~ 1200 (1630)
T 1xi4_A 1132 ----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQ 1200 (1630)
T ss_pred ----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHH
Confidence 235678899999999999999999998877543110 000 01111 24557
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 001110 292 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD 371 (1155)
Q Consensus 292 LA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~ 371 (1155)
+|..+...|+|++|..+|.+| ..|..+|.+|.++|++++|++.+++|.. ..++.
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n----------~~aWk 1254 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANS----------TRTWK 1254 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC----------HHHHH
Confidence 888888888888888888875 2467788888888998888888887732 22222
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 372 AAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 372 al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
.. ..+.+..+.+..|...... .. ..++.+..++..|..+|.|++|+.+++++|.+.+.
T Consensus 1255 ev-~~acve~~Ef~LA~~cgl~---Ii---------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera 1312 (1630)
T 1xi4_A 1255 EV-CFACVDGKEFRLAQMCGLH---IV---------VHADELEELINYYQDRGYFEELITMLEAALGLERA 1312 (1630)
T ss_pred HH-HHHHhhhhHHHHHHHHHHh---hh---------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh
Confidence 11 1223333344444332221 10 12345668889999999999999999999876543
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.12 E-value=1.6e-09 Score=107.90 Aligned_cols=105 Identities=14% Similarity=-0.046 Sum_probs=95.0
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001110 154 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 233 (1155)
Q Consensus 154 ~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e 233 (1155)
.........++.+|..++..|+|++|+.+|++++.+ +|....+++.+|.+|..+|++++|+.+|++++.+
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 345667888999999999999999999999999987 5677889999999999999999999999999997
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001110 234 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 274 (1155)
Q Consensus 234 r~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~ 274 (1155)
.|....+++++|.+|..+|++++|+.+|++++.+.
T Consensus 85 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 ------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp ------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35556789999999999999999999999999874
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.12 E-value=5.9e-10 Score=111.21 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=94.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 235 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~ 235 (1155)
....+..++.+|..++..|+|++|+.+|++++++ .+....+++++|.+|..+|++++|+.+|++++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---- 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 4456888999999999999999999999999988 5667889999999999999999999999999998
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001110 236 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 274 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~ 274 (1155)
.+....+++++|.+|..+|++++|+.+|++++.+.
T Consensus 75 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 ----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45668899999999999999999999999999974
No 142
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.12 E-value=7e-10 Score=110.41 Aligned_cols=108 Identities=15% Similarity=0.063 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY----------HRMTAGAYSLLAVVLYHTGDFNQATIYQQK 227 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d----------~p~~A~al~nLG~vy~~~GdydeAle~~eK 227 (1155)
..+..+..+|..++..|+|++|+.+|.+|+.++....... .+..+.+|.++|.+|..+|+|++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4578899999999999999999999999999865432111 456678999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 228 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 228 ALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
|+.+ .|....+|+.+|.+|..+|++++|+.+|++++.+
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9998 4667889999999999999999999999999997
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.11 E-value=3.3e-10 Score=110.91 Aligned_cols=103 Identities=17% Similarity=0.061 Sum_probs=93.8
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
+|....+++.+|.+++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 6778889999999999999999999999999987 4666788999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34445678999999999999999999999999987
No 144
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.11 E-value=5.4e-10 Score=111.27 Aligned_cols=110 Identities=13% Similarity=0.071 Sum_probs=96.2
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD----------HPDTMKSYGDLAVFYYRLQHTELALKYVK 268 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D----------~p~~a~ay~nLA~iy~~lG~yeeAle~ye 268 (1155)
...+..+..+|..++..|+|++|+.+|++|+.+.......+ .+....+|.++|.+|..+|+|++|+.+|+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 35678899999999999999999999999999865532211 34567899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 269 RALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 269 kALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+++.+ +|....+|+++|.+|..+|++++|+.+|++|+++.
T Consensus 88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 99997 45667899999999999999999999999999984
No 145
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.10 E-value=1.7e-09 Score=128.55 Aligned_cols=211 Identities=15% Similarity=0.048 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 001110 160 GRQLLESSKTALD-------KGKLE-------DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 225 (1155)
Q Consensus 160 A~~Ll~lG~~yl~-------~Gdye-------eAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~ 225 (1155)
...++..|..+.. .|+++ +|+..|++|++. ..|....++..+|.++...|++++|...|
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-------TCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4566777777775 79987 777777777751 14667889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHCCChHH
Q 001110 226 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-EEGLGNVHV 304 (1155)
Q Consensus 226 eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~i-y~~lG~~de 304 (1155)
++++.+. .++ ...+|.++|.++.++|++++|+.+|++|+.. .+.....+...|.+ +...|++++
T Consensus 345 ~~al~~~-----p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 345 NRLLAIE-----DID--PTLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HHHHHSS-----SSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhCcc-----ccC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhH
Confidence 9999851 222 2358999999999999999999999999874 12223344445544 446999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhH
Q 001110 305 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF 384 (1155)
Q Consensus 305 Ale~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~ 384 (1155)
|..+|+++++.. ++ ...++..++.++...|++++|..+|++|+.. .+.++.
T Consensus 410 A~~~~e~al~~~-----p~---~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~-----~~~~~~---------------- 460 (530)
T 2ooe_A 410 AFKIFELGLKKY-----GD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPPE---------------- 460 (530)
T ss_dssp HHHHHHHHHHHH-----TT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS-----CCSCGG----------------
T ss_pred HHHHHHHHHHHC-----CC---CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc-----cCCCHH----------------
Confidence 999999999976 33 3467888999999999999999999998753 122211
Q ss_pred HHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhc
Q 001110 385 EQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 444 (1155)
Q Consensus 385 e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~ 444 (1155)
....++..........|+.+.|..+++++++.++...
T Consensus 461 -----------------------~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 461 -----------------------KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp -----------------------GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 1123455555566778999999999999999998644
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.09 E-value=6.3e-10 Score=114.46 Aligned_cols=131 Identities=17% Similarity=0.144 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----------hhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR----------MTAGAYSLLAVVLYHTGDFNQATIYQQK 227 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p----------~~A~al~nLG~vy~~~GdydeAle~~eK 227 (1155)
..+..++.+|..++..|+|++|+.+|.+++.+.... .+.. ....++.++|.+|..+|++++|+.++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 346788999999999999999999999999874221 0000 0147899999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHH
Q 001110 228 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL 306 (1155)
Q Consensus 228 ALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAl 306 (1155)
++.+ .+....+++++|.+|..+|++++|+.+|++++.+ +|....++..++.++..+++..++.
T Consensus 114 al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 114 VLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 3566789999999999999999999999999986 3445677888999998888777766
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.09 E-value=2.6e-10 Score=125.36 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..++.+|..++..|+|++|+.+|.+++.+ +|....+++++|.+|..+|++++|+.++++|+.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 567889999999999999999999999987 5667889999999999999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
+|....+++++|.+|..+|++++|+.+|++++.+...
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4667789999999999999999999999999998643
No 148
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.08 E-value=1e-09 Score=129.01 Aligned_cols=222 Identities=9% Similarity=0.047 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhc
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG---DFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G---dydeAle~~eKALei~er~l 236 (1155)
...++.+|.+|...+.+++++........... ..++. ++++||.+|...| ++++|+.+|+++++.
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----- 208 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR----- 208 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----
Confidence 45678889999999977776665433333221 12333 8999999999999 999999999999875
Q ss_pred CCCChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-H--HHCCChHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRL----QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-E--EGLGNVHVALRYL 309 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~l----G~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~i-y--~~lG~~deAle~l 309 (1155)
.+..+..+++||.+|... +++++|+.+|+++. +....++++||.+ | ...+++++|+.+|
T Consensus 209 ---g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 209 ---GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp ---TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 234466678999999766 79999999999986 1235678999998 4 5789999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--
Q 001110 310 HKALKCNQRLLGPDHIQTAASYHAIAIALSLME-----AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK-- 382 (1155)
Q Consensus 310 ekALei~ek~lG~dhp~~a~a~~nLA~iy~~lG-----dyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk-- 382 (1155)
++|.+. ....++++||.+|. .| ++++|+.+|++|. +.++... ..|+.+...
T Consensus 275 ~~Aa~~----------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~~~A~---~~Lg~~y~~G~ 332 (452)
T 3e4b_A 275 DNGRAA----------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GREVAAD---YYLGQIYRRGY 332 (452)
T ss_dssp HHHHHT----------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTCHHHH---HHHHHHHHTTT
T ss_pred HHHHHC----------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCCHHHH---HHHHHHHHCCC
Confidence 999853 13578899999998 56 9999999998876 3455433 334433322
Q ss_pred ----hHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 001110 383 ----AFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAKV 439 (1155)
Q Consensus 383 ----~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~----qGdyeeAle~yeKALeL 439 (1155)
+.+.+......... . ...+..+.||.+|.. ..++.+|+.+|++|.+.
T Consensus 333 g~~~d~~~A~~~~~~Aa~-------~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAAR-------N---GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TSSCCHHHHHHHHHHHHT-------T---TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHh-------h---ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 33333333221111 1 123467889999974 56999999999998764
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.07 E-value=2.1e-09 Score=98.95 Aligned_cols=118 Identities=28% Similarity=0.443 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 280 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~ 280 (1155)
.+.+++.+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+|++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 3678999999999999999999999999986 2445678999999999999999999999999875
Q ss_pred CChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 001110 281 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 342 (1155)
Q Consensus 281 dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lG 342 (1155)
.+....++.++|.+|...|++++|+.+|++++++. +....++..+|.++...|
T Consensus 73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHC
T ss_pred -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHhcc
Confidence 23345678999999999999999999999999864 233456778888876654
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.07 E-value=1.8e-09 Score=103.04 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=94.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
.+..+..+..+|.+++..|++++|+.+|++++.+ .+....++.++|.+|..+|++++|+.+|++++.+
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---- 72 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---- 72 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----
Confidence 3456789999999999999999999999999997 3556789999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
+|....+++++|.+|..+|++++|+.+|++++++...
T Consensus 73 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 ----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3455778999999999999999999999999998754
No 151
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.07 E-value=1.6e-10 Score=135.94 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCC---ChHHHHHHHHHHHHH
Q 001110 288 TYINVAMMEEGLG---NVHVALRYLHKALKC 315 (1155)
Q Consensus 288 a~~nLA~iy~~lG---~~deAle~lekALei 315 (1155)
++++||.+|...| ++++|+.+|++|.+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 7789999999999 999999999988764
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.06 E-value=1.7e-09 Score=110.67 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---C-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---D-HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~---D-~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
.+..+.++|..++..|+|++|+..|++||.+....... + .+....+|.|+|.++..+|+|++|+.+|.+||+++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 46678899999999999999999999999986331000 0 1124559999999999999999999999999998766
Q ss_pred hcCCCChhHHHHH----HHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 277 TCGPSHPNTAATY----INVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 277 l~G~dhp~~a~a~----~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
. ++-+|+...+| +++|.++..+|++++|+.+|++|+++.-.
T Consensus 90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5 45678888888 99999999999999999999999999744
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.06 E-value=4.5e-10 Score=112.92 Aligned_cols=122 Identities=14% Similarity=0.141 Sum_probs=102.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001110 212 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 291 (1155)
Q Consensus 212 y~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~n 291 (1155)
+...|++++|+.++++++.. .+....++..+|.+|...|++++|+.+|++++.+. |....++.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 35678999999999999986 35567889999999999999999999999999873 233668899
Q ss_pred HHHH-HHHCCCh--HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 292 VAMM-EEGLGNV--HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 292 LA~i-y~~lG~~--deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+|.+ |...|++ ++|+.+|++++++. +....+++.+|.+|..+|++++|+.+|++++.+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999 8899999 99999999999874 333577899999999999999999999999876
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.05 E-value=3.2e-09 Score=103.82 Aligned_cols=105 Identities=16% Similarity=-0.036 Sum_probs=94.6
Q ss_pred cCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001110 154 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 233 (1155)
Q Consensus 154 ~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~e 233 (1155)
.........++.+|..++..|+|++|+.+|++++.+ +|....+|..+|.+|..+|++++|+.+|++++.+
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 81 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-- 81 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 345566788999999999999999999999999987 5777889999999999999999999999999997
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001110 234 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 274 (1155)
Q Consensus 234 r~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~ 274 (1155)
.|....+++++|.+|..+|++++|+.+|++++.+.
T Consensus 82 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 ------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 35556789999999999999999999999999875
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.05 E-value=1.1e-09 Score=129.26 Aligned_cols=136 Identities=17% Similarity=0.129 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-------CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 229 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~-------d~p~~A~al~nLG~vy~~~GdydeAle~~eKAL 229 (1155)
...+..++.+|..++.+|+|++|+.+|.+|+++....... ..+..+.+|+++|.+|+.+|+|++|+.+|++||
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4567889999999999999999999999999985321000 012337899999999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHH
Q 001110 230 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 308 (1155)
Q Consensus 230 ei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~ 308 (1155)
.+ .+....+|+++|.+|..+|+|++|+.+|++|+.+ +|....++.+++.++..++++++|...
T Consensus 345 ~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 345 GL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 4566889999999999999999999999999985 456677899999999999998887643
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.05 E-value=5.1e-09 Score=96.36 Aligned_cols=117 Identities=27% Similarity=0.456 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..++.+|..+...|++++|+.+|.+++.. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 567888999999999999999999999987 3455678999999999999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 300 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG 300 (1155)
.+....++.++|.+|...|++++|+.+|++++.+ +|....++.++|.++..+|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 2445678899999999999999999999999986 3444567788888877654
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.04 E-value=2.7e-09 Score=109.11 Aligned_cols=117 Identities=19% Similarity=0.111 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCG----PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 234 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G----~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er 234 (1155)
.+..++..|..++..|+|++|+..|++||++...... ...+..+.+|.++|.++..+|+|++|+..|.+||+++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5778999999999999999999999999998543100 001224559999999999999999999999999999766
Q ss_pred hcCCCChhhHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 235 ELGLDHPDTMKSY----GDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 235 ~lG~D~p~~a~ay----~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
. +.-.|+...+| +++|.++..+|++++|+.+|++++++.-.
T Consensus 90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5 34457788888 99999999999999999999999998644
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.04 E-value=3.6e-09 Score=98.47 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 200 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 279 (1155)
Q Consensus 200 ~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G 279 (1155)
..+.++..+|.++...|++++|+.+|++++.+ .+....++.++|.+|..+|++++|+.+|++++.+.... .
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-R 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-c
Confidence 35678999999999999999999999999987 24457889999999999999999999999999986542 2
Q ss_pred CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc
Q 001110 280 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 341 (1155)
Q Consensus 280 ~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~l 341 (1155)
.+++....+++++|.+|...|++++|+.+|++++++. + . ...+..++.++..+
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~-~---~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH-----R-T---PDVLKKCQQAEKIL 125 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----C-C---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----C-C---HHHHHHHHHHHHHH
Confidence 3344458899999999999999999999999999863 2 2 24445555555443
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.01 E-value=3.4e-09 Score=101.07 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|..++..|+|++|+.+|.+++.+ .+....++.++|.+|..+|++++|+.++++++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3677899999999999999999999999987 4666789999999999999999999999999997
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
.+....++.++|.+|..+|++++|+.+|++++.+...
T Consensus 73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3556789999999999999999999999999998654
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.01 E-value=1e-09 Score=120.63 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 280 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~ 280 (1155)
.+..+..+|.+++..|+|++|+.+|++|+.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 4678999999999999999999999999997 4566789999999999999999999999999874
Q ss_pred CChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 281 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 281 dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
+|....+++++|.+|..+|++++|+.+|++++++...
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4556788999999999999999999999999998743
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.01 E-value=7.6e-09 Score=97.56 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 204 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 283 (1155)
Q Consensus 204 al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp 283 (1155)
+++.+|.+++..|++++|+.+|++++... ++++....++..+|.+|+.+|++++|+.+|++++.. .++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 57889999999999999999999999863 445556689999999999999999999999999986 35566
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 284 NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 284 ~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
....+++++|.+|..+|++++|+.+|+++++..
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 668899999999999999999999999999875
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.01 E-value=3e-11 Score=143.55 Aligned_cols=130 Identities=19% Similarity=0.282 Sum_probs=108.7
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
+..+.++..+|.+|+.+|++++|+.+|++|+++ ++....++.++|.+|..+|++++|+++|++|+++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----- 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 445667888999999999999999999999997 4667899999999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--HHHcCChhHHHHHHH
Q 001110 279 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA--LSLMEAYPLSVQHEQ 352 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~i--y~~lGdyeeAle~lk 352 (1155)
+|....+++++|.+|..+|++++|+.+|++|+++. +++ ..++.+++.+ +..+|++++|+.+++
T Consensus 70 ---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 70 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHD---KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTC---TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45667899999999999999999999999999874 222 3456667777 888899999999988
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.01 E-value=5.7e-09 Score=98.40 Aligned_cols=119 Identities=13% Similarity=-0.007 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcH
Q 001110 246 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 325 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp 325 (1155)
+++.+|.+++..|+|++|+.+|++++.. .++++....+++.+|.+|..+|++++|+.+|+++++.. +++.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCc
Confidence 4678999999999999999999999885 35666667899999999999999999999999999874 5555
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 001110 326 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 379 (1155)
Q Consensus 326 ~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l 379 (1155)
....+++.+|.+|..+|++++|+.+|++++.. .++++....+...+..+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ-----YPGSDAARVAQERLQSI 122 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHH
Confidence 56788999999999999999999999999876 36777776666665544
No 164
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.00 E-value=1.5e-08 Score=130.95 Aligned_cols=239 Identities=14% Similarity=0.077 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE-- 235 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~-- 235 (1155)
.....++.+|+.+...|++++|+..|.+| .....|..+|.++...|+|++|+++|+.|+......
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I 1169 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV 1169 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc
Confidence 34667889999999999999999999775 234578889999999999999999998877543110
Q ss_pred ----------cCC--------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001110 236 ----------LGL--------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 297 (1155)
Q Consensus 236 ----------lG~--------D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~ 297 (1155)
.+. ..+.. ..+.++|..++..|+|++|..+|.+| ..|..+|.+|.
T Consensus 1170 dt~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLv 1232 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLV 1232 (1630)
T ss_pred cHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHH
Confidence 000 11122 34567999999999999999999885 25788999999
Q ss_pred HCCChHHHHHHHHHHHHHHH--H----h-----------cCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 298 GLGNVHVALRYLHKALKCNQ--R----L-----------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 298 ~lG~~deAle~lekALei~e--k----~-----------lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
.+|++++|++.+++|..... + . .|......+..+..++..|..+|.|++|+.++++++.+
T Consensus 1233 kLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--- 1309 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--- 1309 (1630)
T ss_pred HhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---
Confidence 99999999999998865421 0 0 01111112334567888999999999999999998854
Q ss_pred HcCCCCHHHHHHHHHHH--HHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001110 361 KLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTY 435 (1155)
Q Consensus 361 ~lG~dh~~t~~al~~La--~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeK 435 (1155)
.+.|.....-+..+. +--.+..+..+.+......+....+ -..+.+|..+.-+|.+-|+|+.|+....+
T Consensus 1310 --eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~----~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1310 --ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA----AEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred --ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHH----HHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 334444433333222 1122233333333322222211111 12456788888999999999999954433
No 165
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.00 E-value=2.9e-09 Score=122.48 Aligned_cols=136 Identities=16% Similarity=0.102 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC--------GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 228 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~--------G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKA 228 (1155)
...+..+..+|..++..|+|++|+.+|++|+++..... ....+..+.+|.++|.+|+.+|++++|+.++++|
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34567789999999999999999999999999754420 0125677899999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHH
Q 001110 229 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 308 (1155)
Q Consensus 229 Lei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~ 308 (1155)
+.+ .+....+++++|.+|..+|++++|+.+|++|+.+ .|....++..++.++..++++++|...
T Consensus 300 l~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 300 LEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 986 4667889999999999999999999999999986 344466788889999888887777543
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.99 E-value=8.2e-09 Score=94.21 Aligned_cols=114 Identities=24% Similarity=0.230 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------- 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------
Confidence 3567889999999999999999999999987 4556779999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 296 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy 296 (1155)
.+....++.++|.+|..+|++++|+.+|++++.+ .|....++..++.+.
T Consensus 68 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 3455778999999999999999999999999874 233345566666654
No 167
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.99 E-value=2.3e-09 Score=123.37 Aligned_cols=133 Identities=15% Similarity=0.116 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL--------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 272 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l--------G~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALe 272 (1155)
.+..+..+|.+|+..|+|++|+.+|++|+.+..... ....+....+|.++|.+|+.+|+|++|+.+|++|+.
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 456788999999999999999999999999765420 012466788999999999999999999999999998
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHH
Q 001110 273 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 349 (1155)
Q Consensus 273 i~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle 349 (1155)
+ +|....+++++|.+|..+|++++|+.+|++|+++. + ....++..|+.++..++++++|..
T Consensus 302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-----P---~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-----P---EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 45668899999999999999999999999999874 2 234677888999988888887765
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.99 E-value=7.5e-09 Score=96.29 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|..++..|++++|+.+|.+++.+ .+....++..+|.+|..+|++++|+.++++++.+.... ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 4677899999999999999999999999987 35567889999999999999999999999999986542 22
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
+......++.++|.+|..+|++++|+++|++++.+
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33344789999999999999999999999999985
No 169
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.97 E-value=6.6e-09 Score=94.85 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 280 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~ 280 (1155)
.+..+..+|.++...|++++|+.+|++++.. .+....++.++|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------- 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------
Confidence 4568899999999999999999999999986 3445778999999999999999999999999986
Q ss_pred CChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 001110 281 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 338 (1155)
Q Consensus 281 dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy 338 (1155)
.|....++.++|.++..+|++++|+.+|++++++. ++ ...++..++.+.
T Consensus 68 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-----AN---NPQLKEGLQNME 116 (118)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TT---CHHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CC---CHHHHHHHHHhh
Confidence 34446789999999999999999999999998753 22 334555566553
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.93 E-value=1.3e-09 Score=123.36 Aligned_cols=142 Identities=11% Similarity=0.044 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001110 200 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH---------PDTMKSYGDLAVFYYRLQHTELALKYVKRA 270 (1155)
Q Consensus 200 ~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~---------p~~a~ay~nLA~iy~~lG~yeeAle~yekA 270 (1155)
..+..+..+|.+++..|+|++|+.+|++|+.+......... .....+|+++|.+|..+|+|++|+.+|+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667889999999999999999999999987322100000 000138899999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChhHHHH
Q 001110 271 LYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQ 349 (1155)
Q Consensus 271 Lei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~-~lGdyeeAle 349 (1155)
+.+ +|....+|+++|.+|..+|++++|+.+|++|+++. +....++..|+.+.. ..+..+++..
T Consensus 257 l~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 257 LTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 986 35557889999999999999999999999998875 334566777887744 5567777888
Q ss_pred HHHHHHHH
Q 001110 350 HEQTTLQI 357 (1155)
Q Consensus 350 ~lkkALeI 357 (1155)
.|++++..
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 88877754
No 171
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.93 E-value=2.4e-08 Score=118.62 Aligned_cols=186 Identities=13% Similarity=0.023 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHHHHHhcCCCChh
Q 001110 177 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-------TGDFN-------QATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 177 eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~-------~Gdyd-------eAle~~eKALei~er~lG~D~p~ 242 (1155)
..|+..|++|+.. .|....+|..+|.++.. .|+++ +|+..|++|+. ...|.
T Consensus 255 ~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~-------~~~p~ 319 (530)
T 2ooe_A 255 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS-------TLLKK 319 (530)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT-------TTCSS
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH-------HhCcc
Confidence 4788899999987 35667899999999886 79988 66666666654 12466
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCC
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 322 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~ 322 (1155)
...++..+|.++..+|++++|...|++++.+ .+.++ ..+|.++|.++...|++++|+.+|++|++.. +
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-----~ 387 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDA-----R 387 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-----T
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-----C
Confidence 6788999999999999999999999999984 22222 3588999999999999999999999998752 2
Q ss_pred CcHHHHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhh
Q 001110 323 DHIQTAASYHAIAIA-LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI 401 (1155)
Q Consensus 323 dhp~~a~a~~nLA~i-y~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~ 401 (1155)
. ....+...+.+ +...|++++|..+|+++++.. ++++
T Consensus 388 ~---~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-----p~~~---------------------------------- 425 (530)
T 2ooe_A 388 T---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIP---------------------------------- 425 (530)
T ss_dssp C---CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-----TTCH----------------------------------
T ss_pred C---chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-----CCCH----------------------------------
Confidence 2 12334444444 346899999999999998753 3332
Q ss_pred hhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001110 402 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 440 (1155)
Q Consensus 402 a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~ 440 (1155)
+++..++..+..+|++++|+.+|++++...
T Consensus 426 ---------~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 426 ---------EYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp ---------HHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred ---------HHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 234555666677899999999999998863
No 172
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.93 E-value=4.1e-08 Score=112.41 Aligned_cols=244 Identities=9% Similarity=0.071 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCC
Q 001110 162 QLLESSKTALDK-GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 162 ~Ll~lG~~yl~~-GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G-dydeAle~~eKALei~er~lG~D 239 (1155)
.++..-+..+.. +..++|+.++.++|.+ +|....+++..+.++..+| ++++++.++.++|..
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-------- 118 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-------- 118 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------
Confidence 333333344444 4557899999999988 7888899999999999999 599999999999875
Q ss_pred ChhhHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChH--------HHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRL-Q-HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH--------VALRYL 309 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~l-G-~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~d--------eAle~l 309 (1155)
+|....+++..+.++..+ + +++++++++.+++.+ +|....+++..+.++...|.++ ++++++
T Consensus 119 nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 577788999999999998 8 899999999998863 5666788999999999888887 899999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 001110 310 HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA-------YPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK 382 (1155)
Q Consensus 310 ekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGd-------yeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk 382 (1155)
.++++.. +....++++.+.++..+++ ++++++++++++.+ .+++...+..+.++......
T Consensus 191 ~k~I~~d--------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-----~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 191 NEMLRVD--------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-----IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHC--------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhC--------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCC
Confidence 9888863 4455788899999998887 67888888888865 57777776665555432211
Q ss_pred h-H----------------HHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 383 A-F----------------EQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 383 ~-~----------------e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
. . ..........................-++..|+.+|..+|+.++|+++|+...+-.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 258 PLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp CSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred CcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 1 0 0000000011111100000112345568899999999999999999999876544443
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.93 E-value=1.5e-09 Score=122.94 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--CCC-------ChhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC--GPY-------HRMTAGAYSLLAVVLYHTGDFNQATIYQQK 227 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~--G~d-------~p~~A~al~nLG~vy~~~GdydeAle~~eK 227 (1155)
...+..++.+|..++..|+|++|+.+|++|+.+..... ... ......+|+++|.+|+.+|+|++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44678899999999999999999999999998732110 000 000114899999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHCCChHHHH
Q 001110 228 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-EEGLGNVHVAL 306 (1155)
Q Consensus 228 ALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~i-y~~lG~~deAl 306 (1155)
||.+ ++....+|+++|.+|..+|+|++|+.+|++++.+ .|....++.+|+.+ ....+..+++.
T Consensus 256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 4566889999999999999999999999999876 34456677888888 44556778888
Q ss_pred HHHHHHHHHH
Q 001110 307 RYLHKALKCN 316 (1155)
Q Consensus 307 e~lekALei~ 316 (1155)
.+|.+++...
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8998888764
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.92 E-value=5.8e-09 Score=100.18 Aligned_cols=95 Identities=18% Similarity=0.097 Sum_probs=87.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~ 242 (1155)
++.+|..++..|++++|+..|++++++ +|....+++.||.++..+|++++|+.+|++|+.+ .|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~ 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 577889999999999999999999987 6778899999999999999999999999999998 466
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
...++.+||.+|..+|++++|+.+|++++.+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999875
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1e-08 Score=98.14 Aligned_cols=103 Identities=17% Similarity=0.104 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..++..|+|++|+.+|++++++. ++++....++.++|.+|..+|++++|+.++++++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------ 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------
Confidence 347788999999999999999999999998751 233334889999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
.+....++.++|.+|..+|++++|+.+|++++.+
T Consensus 95 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 95 --DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp --TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3445788999999999999999999999999986
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=7.3e-09 Score=99.19 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=92.3
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
.+..+..++.+|..++..|++++|+.+|++++.+. .++.....++.++|.+|..+|++++|+.+|++++.+
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 94 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---- 94 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 35678899999999999999999999999998752 233334789999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 95 ----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 95 ----DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp ----TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ----CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 23347789999999999999999999999999874
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.88 E-value=7.3e-09 Score=99.49 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 203 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 203 ~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dh 282 (1155)
..++.+|.++...|++++|+..|++++.+ .|....++..+|.++..+|++++|+.+|++++.+ .
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 81 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------D 81 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 35788999999999999999999999997 4667889999999999999999999999999997 4
Q ss_pred hhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 283 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 283 p~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5556789999999999999999999999999764
No 178
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.86 E-value=1.4e-09 Score=127.82 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..+..+|..++..|++++|++.|.++- ....|..++..+...|+|++|+.+++.+++..
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~-------------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~-------- 91 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKAD-------------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA-------- 91 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC-------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------
Confidence 477789999999999999999997642 12367888889999999999999999887741
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 241 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
++ ..+...|+.+|.++|+++++.++++. |.. .++.++|..+...|+|++|..+|.++
T Consensus 92 ~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 92 RE-SYVETELIFALAKTNRLAELEEFING-------------PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp ------------------CHHHHTTTTTC-------------C-----------------CTTTHHHHHHHT--------
T ss_pred cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 11 45677899999999999999887752 222 38999999999999999999999965
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchh
Q 001110 321 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 400 (1155)
Q Consensus 321 G~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~ 400 (1155)
..|..||.++.++|+|++|++.+++|. ++.++.... .+....+.++.++... . ...
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~~~~Wk~v~-~aCv~~~ef~lA~~~~--l-~L~-- 204 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKAN----------STRTWKEVC-FACVDGKEFRLAQMCG--L-HIV-- 204 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------CHHHHHHHH-HHHHHTTCHHHHHHTT--T-TTT--
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHcC----------CchhHHHHH-HHHHHcCcHHHHHHHH--H-HHH--
Confidence 246789999999999999999998882 444443322 1233334444443221 1 111
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 401 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 401 ~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
..++-+..+...|.+.|++++|+.++++++.+.+.
T Consensus 205 -------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 205 -------VHADELEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp -------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred -------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 11122445788899999999999999999876543
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.85 E-value=5.1e-09 Score=94.94 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
|..+.++..+|.++...|++++|+.+|++++.+ .+....++.++|.+|..+|++++|+.+|++++.+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----- 69 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV----- 69 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 344567889999999999999999999999987 2445678999999999999999999999999985
Q ss_pred CCCChh--HHHHHHHHHHHHHHC-CChHHHHHHHHHHHHH
Q 001110 279 GPSHPN--TAATYINVAMMEEGL-GNVHVALRYLHKALKC 315 (1155)
Q Consensus 279 G~dhp~--~a~a~~nLA~iy~~l-G~~deAle~lekALei 315 (1155)
.|. ...++.++|.++..+ |++++|+.+|++++..
T Consensus 70 ---~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 70 ---IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp ---SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred ---CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 233 467899999999999 9999999999998764
No 180
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.1e-08 Score=113.82 Aligned_cols=182 Identities=12% Similarity=-0.049 Sum_probs=140.2
Q ss_pred cCChHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-------------hhHHHHHHHHHHHH
Q 001110 154 ACSSADGRQLLES-------SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-------------MTAGAYSLLAVVLY 213 (1155)
Q Consensus 154 ~~~s~~A~~Ll~l-------G~~yl~~GdyeeAle~~~eALel~e~i~G~d~p-------------~~A~al~nLG~vy~ 213 (1155)
......++.++.+ +.++...+++.+++..+++++.+.-..++.... ..-.+...+|.++.
T Consensus 34 ~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~ 113 (282)
T 4f3v_A 34 NYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEA 113 (282)
T ss_dssp HHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHH
T ss_pred HhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHH
Confidence 3344456667777 677777778888888888888764333222111 12455667899999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHH
Q 001110 214 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT-AATYINV 292 (1155)
Q Consensus 214 ~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~-a~a~~nL 292 (1155)
..|+|++|.+.|..++.. .|... .++.+|.+++..++|++|+.+|++++.. .++.. ..+++++
T Consensus 114 ~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~L 177 (282)
T 4f3v_A 114 AQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-------PDKFLAGAAGVAH 177 (282)
T ss_dssp HHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-------CCcccHHHHHHHH
Confidence 999999999999877652 35555 8899999999999999999999866442 23433 5689999
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 293 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ-TAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 293 A~iy~~lG~~deAle~lekALei~ek~lG~dhp~-~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
|.++..+|++++|+.+|++++. |...|. ...+++++|.++..+|+.++|...|++++..
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999873 232133 6678899999999999999999999999976
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.74 E-value=1.8e-08 Score=95.14 Aligned_cols=90 Identities=24% Similarity=0.221 Sum_probs=76.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001110 214 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 293 (1155)
Q Consensus 214 ~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA 293 (1155)
.+|++++|+.+|++++.+ +.++|....++.+||.+|..+|++++|+.+|++++.+ +|....+++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999985 2235778899999999999999999999999999986 344578899999
Q ss_pred HHHHHCCChHHHHHHHHHHHHHH
Q 001110 294 MMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 294 ~iy~~lG~~deAle~lekALei~ 316 (1155)
.+|..+|++++|+.+|+++++..
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999876
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.73 E-value=1.8e-08 Score=95.08 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=75.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 001110 172 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 251 (1155)
Q Consensus 172 ~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA 251 (1155)
..|++++|+.+|++++++ +..+|....++.+||.+|..+|++++|+.+|++++.+ .|....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 368999999999999975 1235788899999999999999999999999999987 455678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 001110 252 VFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 252 ~iy~~lG~yeeAle~yekALei 273 (1155)
.+|..+|++++|+.+|++++..
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=2.9e-08 Score=89.91 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 240 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~ 240 (1155)
..++.+|..++..|++++|+.+|++++++ .+....++..+|.+|..+|++++|+.++++++.+ .
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~ 70 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------I 70 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------S
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence 44567888999999999999999999987 3556778999999999999999999999999986 2
Q ss_pred hh--hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 001110 241 PD--TMKSYGDLAVFYYRL-QHTELALKYVKRALYL 273 (1155)
Q Consensus 241 p~--~a~ay~nLA~iy~~l-G~yeeAle~yekALei 273 (1155)
+. ...++.++|.+|..+ |++++|++++++++..
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 34 578899999999999 9999999999998864
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.70 E-value=1.8e-07 Score=113.76 Aligned_cols=173 Identities=14% Similarity=0.161 Sum_probs=143.6
Q ss_pred HHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHh
Q 001110 167 SKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD----------FNQATIYQQKALDINERE 235 (1155)
Q Consensus 167 G~~yl~~Gdy-eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gd----------ydeAle~~eKALei~er~ 235 (1155)
.......|++ ++|++++.+++.+ +|....+|+..+.++..+|+ +++|+.++.+++..
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---- 102 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---- 102 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh----
Confidence 3344556665 5789999999988 78888999999999999988 99999999999986
Q ss_pred cCCCChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-ChHHHHHHHHHH
Q 001110 236 LGLDHPDTMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKA 312 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~lG--~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG-~~deAle~lekA 312 (1155)
+|....++++.+.++..++ ++++|++++.+++++ ++....+|++.+.++...| .++++++++.++
T Consensus 103 ----~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~ 170 (567)
T 1dce_A 103 ----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 170 (567)
T ss_dssp ----CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred ----CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 5778899999999999999 779999999999996 5666889999999999999 899999999998
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001110 313 LKCNQRLLGPDHIQTAASYHAIAIALSLM--------------EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 313 Lei~ek~lG~dhp~~a~a~~nLA~iy~~l--------------GdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~L 376 (1155)
++.. +....+|++.+.++..+ +.+++|++++++|+.+ .+++...+..+.++
T Consensus 171 I~~~--------p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-----~P~~~saW~y~~~l 235 (567)
T 1dce_A 171 ITRN--------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWL 235 (567)
T ss_dssp TTTT--------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-----CSSCSHHHHHHHHH
T ss_pred HHHC--------CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-----CCCCccHHHHHHHH
Confidence 8653 44557888889888875 5678899999988865 57776665555444
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.65 E-value=3.5e-06 Score=95.88 Aligned_cols=173 Identities=14% Similarity=0.151 Sum_probs=140.0
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHhc
Q 001110 168 KTALDKGKLE-DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD----------FNQATIYQQKALDINEREL 236 (1155)
Q Consensus 168 ~~yl~~Gdye-eAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gd----------ydeAle~~eKALei~er~l 236 (1155)
......|.++ +|+.++.+++.+ +|....+|+..+.++..++. +++++.++.+++..
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~----- 103 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----- 103 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-----
Confidence 3445677776 789999998876 78888899999999887765 56777777777765
Q ss_pred CCCChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-hHHHHHHHHHHH
Q 001110 237 GLDHPDTMKSYGDLAVFYYRLQH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN-VHVALRYLHKAL 313 (1155)
Q Consensus 237 G~D~p~~a~ay~nLA~iy~~lG~--yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~-~deAle~lekAL 313 (1155)
+|....+++..+.++..+++ +++++.++.+++++ +|....++++.+.++...|. ++++++++.+++
T Consensus 104 ---~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 104 ---NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp ---CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 57778899999999999994 89999999999986 56678899999999999999 599999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 001110 314 KCNQRLLGPDHIQTAASYHAIAIALSLM--------------EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 377 (1155)
Q Consensus 314 ei~ek~lG~dhp~~a~a~~nLA~iy~~l--------------GdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La 377 (1155)
+.. +....++++.+.++... +.++++++++++++.+ .+++...+..+.++.
T Consensus 173 ~~~--------p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 173 TRN--------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHC--------SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHH
T ss_pred HHC--------CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Confidence 763 44557788888888776 4578889998888865 688888776665553
No 186
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.61 E-value=1.3e-06 Score=98.54 Aligned_cols=187 Identities=9% Similarity=0.008 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
.++.+|.++...|++++|+.++.+.+.. ........++..++.+|..+|+.+.|...+++..++..... -..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~------~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~--~~~ 173 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDN------DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV--SGD 173 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTS------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH--HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc--ccc
Confidence 3468899999999999999999998653 11136778999999999999999999999999876521000 001
Q ss_pred hhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 242 DTMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG--~yeeAle~yekALei~e~l~G~dhp~--~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
+...++..-|++.+..| ++.+|..+|+++... .|. ....+++ ++..+|++++|...++.+++..-
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEELSQT--------FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHH
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcc
Confidence 23333444466677777 999999999996542 333 2334444 89999999999999997776542
Q ss_pred HhcCCC--cHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 001110 318 RLLGPD--HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 374 (1155)
Q Consensus 318 k~lG~d--hp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~ 374 (1155)
..-..+ .+..+.++.|+..+...+|+ +|.+++.++.+. .++|+...+...
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~-----~P~hp~i~d~~~ 294 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL-----DHEHAFIKHHQE 294 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-----TCCCHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-----CCCChHHHHHHH
Confidence 110000 13456778888888888897 788888877754 689997766544
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.1e-08 Score=90.55 Aligned_cols=97 Identities=11% Similarity=0.192 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 201 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 280 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~ 280 (1155)
.+.++..+|.+++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+ .+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-----TS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CC
Confidence 3568899999999999999999999999997 3556788999999999999999999999999975 22
Q ss_pred CC---hhHHHHHHHHHHHHHHCCChHHHHHHHH
Q 001110 281 SH---PNTAATYINVAMMEEGLGNVHVALRYLH 310 (1155)
Q Consensus 281 dh---p~~a~a~~nLA~iy~~lG~~deAle~le 310 (1155)
++ .....+++++|.++..+|++++|+..|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 70 TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 22 1137788999999999998887766554
No 188
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.55 E-value=1.6e-07 Score=110.34 Aligned_cols=223 Identities=14% Similarity=0.062 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
.+...+..+...|+|++|+.+++.+.+... . ..+...|+.+|.++|++.++.++++. |
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~~--------~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------p 120 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKKAR--------E-SYVETELIFALAKTNRLAELEEFING-------------P 120 (449)
T ss_dssp -------------------------------------------------------CHHHHTTTTTC-------------C
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCc--------c-chhHHHHHHHHHHhCCHHHHHHHHcC-------------C
Confidence 444455556667777777777776665310 1 22334444455555555544444321 1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH--HHh
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN--QRL 319 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~--ek~ 319 (1155)
.. .++.++|..|+..|+|++|..+|.++ ..|..||.++..+|+|++|++.|++|.... ...
T Consensus 121 n~-~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v 183 (449)
T 1b89_A 121 NN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 183 (449)
T ss_dssp -----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred cH-HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHH
Confidence 11 14444444444444444444444433 123444444444444444444444442210 000
Q ss_pred ---------------cC---CCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 001110 320 ---------------LG---PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 381 (1155)
Q Consensus 320 ---------------lG---~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~q 381 (1155)
.+ ..++.. +..+..+|.+.|++++|+.++++++.+ .+.|.....-+..+ +.+-
T Consensus 184 ~~aCv~~~ef~lA~~~~l~L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l-----e~ah~~~ftel~il-~~ky 254 (449)
T 1b89_A 184 CFACVDGKEFRLAQMCGLHIVVHADE---LEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAIL-YSKF 254 (449)
T ss_dssp HHHHHHTTCHHHHHHTTTTTTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS-----TTCCHHHHHHHHHH-HHTT
T ss_pred HHHHHHcCcHHHHHHHHHHHHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC-----cHHHHHHHHHHHHH-HHhc
Confidence 00 022222 335778899999999999999998854 45565554444322 2222
Q ss_pred HhHHHHHHHHhcCCCCchhh---hhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001110 382 KAFEQQEAARNGTRKPDASI---ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 436 (1155)
Q Consensus 382 k~~e~AeAi~~~~~~~~~~~---a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKA 436 (1155)
+-....+.+.......+... ... ...+|..+.-+|...++|+.|+....+.
T Consensus 255 ~p~k~~ehl~~~~~~ini~k~~~~~~----~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 255 KPQKMREHLELFWSRVNIPKVLRAAE----QAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp CHHHHHHHHHHHSTTSCHHHHHHHHH----TTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhcCcHHHHHHH----HHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 22222222222222222111 001 1235677778889999999998876543
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=4.9e-08 Score=89.27 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 238 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~ 238 (1155)
.+..++.+|..++..|+|++|+.+|++++++ .|....++.++|.+|..+|++++|+.+|++++.+.... .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~ 72 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA--E 72 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST--T
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--c
Confidence 3567889999999999999999999999987 46667899999999999999999999999999862110 0
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKR 269 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yek 269 (1155)
+......++..+|.++..+|+++.|+..+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 0111377889999999999988887765543
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.52 E-value=6.4e-07 Score=78.86 Aligned_cols=86 Identities=30% Similarity=0.507 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
+..+.+++.+|.+|...|++++|+.+|++++.+ .+....++.++|.+|..+|++++|+.+|++++.+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----- 72 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----- 72 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 456788999999999999999999999999987 3455778999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCC
Q 001110 279 GPSHPNTAATYINVAMMEEGLG 300 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG 300 (1155)
+|....++.++|.++..+|
T Consensus 73 ---~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ---DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---CTTCHHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHhcC
Confidence 3445678889999887654
No 191
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.51 E-value=1.1e-06 Score=98.93 Aligned_cols=167 Identities=6% Similarity=0.031 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH----Hhc---CCHHHHHHHHHH
Q 001110 157 SADGRQLLESSKTALDKG--KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL----YHT---GDFNQATIYQQK 227 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~G--dyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy----~~~---GdydeAle~~eK 227 (1155)
+....++...+.++...| ++++++.++.+++.+ +|....+|+..+.++ ... +++++++.++.+
T Consensus 64 P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~ 135 (306)
T 3dra_A 64 ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEA 135 (306)
T ss_dssp TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 334566777888888888 999999999999987 677788999999988 666 789999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC----
Q 001110 228 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE--LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN---- 301 (1155)
Q Consensus 228 ALei~er~lG~D~p~~a~ay~nLA~iy~~lG~ye--eAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~---- 301 (1155)
++.. +|....+++..+.++..+|.++ ++++++.++++. ++....++++.+.++...+.
T Consensus 136 ~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 136 MLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchh
Confidence 9986 5777899999999999999998 999999999985 56668899999999999987
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHH-HHHHHHH
Q 001110 302 --VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV-QHEQTTL 355 (1155)
Q Consensus 302 --~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAl-e~lkkAL 355 (1155)
++++++++.+++.+. +....+++.++.++...|+..+++ .++.+++
T Consensus 200 ~~~~eEl~~~~~aI~~~--------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC--------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred hhHHHHHHHHHHHHHhC--------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 899999999999864 444577888999999988865544 4554444
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.47 E-value=7e-07 Score=108.53 Aligned_cols=158 Identities=6% Similarity=0.021 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC--CHHHHHHH
Q 001110 157 SADGRQLLESSKTALDKGK----------LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIY 224 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~Gd----------yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G--dydeAle~ 224 (1155)
.....++...+.++...|+ +++|+.++.+++.. +|....+|+..+.++..++ ++++|+.+
T Consensus 60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~y~aW~hR~w~l~~l~~~~~~~el~~ 131 (567)
T 1dce_A 60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELEL 131 (567)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccccHHHHHHH
Confidence 3345567777777777777 99999999999987 7888899999999999999 77999999
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC----
Q 001110 225 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---- 299 (1155)
Q Consensus 225 ~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG-~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l---- 299 (1155)
+.+++++ ++....++++.+.++..+| .+++|++++.++++. +|....+|++.+.++..+
T Consensus 132 ~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--------~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 132 CARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------CCCCccHHHHHHHHHHhhcccc
Confidence 9999997 5677889999999999999 899999999998864 566788999999998885
Q ss_pred ----------CChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhH
Q 001110 300 ----------GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 346 (1155)
Q Consensus 300 ----------G~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyee 346 (1155)
+.+++|++++.+|+.+. |....+|+.++.++...+++++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~--------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC--------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC--------CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999999874 3334678889999988888655
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.47 E-value=2.6e-07 Score=94.45 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=76.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCCh
Q 001110 172 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF----------NQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 172 ~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gdy----------deAle~~eKALei~er~lG~D~p 241 (1155)
+.+.|++|+..|++++++ +|..+.+|.++|.++..++++ ++|+..|++||.+ .|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 346789999999999998 688899999999999998875 5899999999988 57
Q ss_pred hhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Q 001110 242 DTMKSYGDLAVFYYRLQ-----------HTELALKYVKRALYL 273 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG-----------~yeeAle~yekALei 273 (1155)
....+|++||.+|..+| ++++|+++|++|+++
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 78899999999999885 899999999999997
No 194
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.46 E-value=1e-05 Score=92.04 Aligned_cols=150 Identities=6% Similarity=0.049 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 001110 176 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 253 (1155)
Q Consensus 176 yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G--dydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~i 253 (1155)
+++++.++.+++.. +|....+|+..+.++...+ ++++++.++.+++++ ++....+++..+.+
T Consensus 90 l~~EL~~~~~~L~~--------~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~v 153 (331)
T 3dss_A 90 VKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFV 153 (331)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 67778888777765 6888899999999999999 499999999999987 57778899999999
Q ss_pred HHHcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--------------CChHHHHHHHHHHHHHHHH
Q 001110 254 YYRLQH-TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL--------------GNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 254 y~~lG~-yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l--------------G~~deAle~lekALei~ek 318 (1155)
+...|. ++++++++.+++.. +|....++++.+.++..+ +.++++++++.+++.+.
T Consensus 154 l~~l~~~~~eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-- 223 (331)
T 3dss_A 154 AAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-- 223 (331)
T ss_dssp HHHTTCCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhCcCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--
Confidence 999999 69999999999985 566788899999988877 45889999999999874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHH
Q 001110 319 LLGPDHIQTAASYHAIAIALSLM-----------EAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~l-----------GdyeeAle~lkkALeI 357 (1155)
|....+++.+..++... +.++++++++++++++
T Consensus 224 ------P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 224 ------PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 33345555455555443 3456677766666655
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.43 E-value=2.3e-06 Score=75.30 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 237 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG 237 (1155)
..+..++.+|..++..|++++|+.+|++++++ .+....++..+|.+|..+|++++|+.+|++++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------ 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 34677889999999999999999999999987 4556788999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcC
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQ 258 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG 258 (1155)
.|....++.++|.++..+|
T Consensus 73 --~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 --DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --CTTCHHHHHHHHHHHHHHC
T ss_pred --CCCCHHHHHHHHHHHHhcC
Confidence 3556778899999988765
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.42 E-value=1.5e-06 Score=85.43 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 001110 174 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 253 (1155)
Q Consensus 174 GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~i 253 (1155)
+++++|+.+|+++.+. .++. +. ||.+|...+.+++|+.+|++|.+. ....++++||.+
T Consensus 9 ~d~~~A~~~~~~aa~~-------g~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-------NEMF---GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT-------TCTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-------CCHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 4688999999999875 1222 33 999999999999999999999874 346789999999
Q ss_pred HHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHH
Q 001110 254 YYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKC 315 (1155)
Q Consensus 254 y~~----lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~----lG~~deAle~lekALei 315 (1155)
|.. .+++++|+++|++|.+. . ...++++||.+|.. .+++++|+.+|++|.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~-------g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL-------N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC-------C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999 89999999999999873 1 25688999999999 99999999999999875
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.42 E-value=1.4e-06 Score=81.41 Aligned_cols=83 Identities=14% Similarity=-0.035 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 001110 178 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL 257 (1155)
Q Consensus 178 eAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~l 257 (1155)
+|+.+|+++++. .|....+++.+|.+|...|++++|+.+|++++.+ .+....++.++|.+|..+
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 577788888765 4667789999999999999999999999999987 356678899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 001110 258 QHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 258 G~yeeAle~yekALei~e~ 276 (1155)
|++++|+.+|++++.+...
T Consensus 67 g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccc
Confidence 9999999999999997543
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.40 E-value=6.1e-07 Score=91.67 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=81.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHHHHHhcCCCc
Q 001110 255 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV----------HVALRYLHKALKCNQRLLGPDH 324 (1155)
Q Consensus 255 ~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~----------deAle~lekALei~ek~lG~dh 324 (1155)
.+.++|++|++.|++++++ +|..+.+|+++|.++..++++ ++|+..|++||++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------- 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------
Confidence 3566789999999999986 567788999999999999875 59999999999885
Q ss_pred HHHHHHHHHHHHHHHHcC-----------ChhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 001110 325 IQTAASYHAIAIALSLME-----------AYPLSVQHEQTTLQILRAKLGPDDLRTQDAA 373 (1155)
Q Consensus 325 p~~a~a~~nLA~iy~~lG-----------dyeeAle~lkkALeI~kk~lG~dh~~t~~al 373 (1155)
|....+|+++|.+|..+| ++++|+.+|++|+++ .+++.....++
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-----~P~~~~y~~al 131 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE-----QPDNTHYLKSL 131 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence 556788999999999875 899999999999987 67776554443
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.38 E-value=1.5e-06 Score=81.05 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 001110 220 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 299 (1155)
Q Consensus 220 eAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l 299 (1155)
+|+.+|++++.. .|....+++++|.+|..+|++++|+.+|++++.+ +|....+++++|.+|..+
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 467778888764 3556789999999999999999999999999986 345577899999999999
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 001110 300 GNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 300 G~~deAle~lekALei~ek 318 (1155)
|++++|+.+|++++++...
T Consensus 67 g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccc
Confidence 9999999999999998743
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.33 E-value=2.6e-06 Score=83.83 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001110 216 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 295 (1155)
Q Consensus 216 GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~i 295 (1155)
+++++|+.+|++|.+. | ++. ++ ||.+|...+.+++|+++|++|.+. . ...++++||.+
T Consensus 9 ~d~~~A~~~~~~aa~~-----g--~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g---~~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-----N--EMF---GC--LSLVSNSQINKQKLFQYLSKACEL-------N---SGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT-----T--CTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT-------T---CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-----C--CHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC-------C---CHHHHHHHHHH
Confidence 4788999999999874 1 222 22 999999999999999999999874 1 25788999999
Q ss_pred HHH----CCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHH
Q 001110 296 EEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 296 y~~----lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~----lGdyeeAle~lkkALeI 357 (1155)
|.. .+++++|+.+|++|.+.- ...++++||.+|.. .+++++|+.+|++|.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~g----------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGLN----------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999 899999999999998641 35778999999999 89999999999999864
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.27 E-value=4.7e-06 Score=76.75 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=63.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
+|....+++.+|.+|+.+|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+++|++++.+...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4667789999999999999999999999999997 3556679999999999999999999999999998654
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.25 E-value=3.8e-06 Score=77.39 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=62.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
.|....+++++|.+|+.+|++++|+.+|++++.+ +|....+++++|.+|..+|++++|+.+|++++++...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3566788999999999999999999999999986 3445668999999999999999999999999998754
No 203
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.25 E-value=9.7e-06 Score=91.37 Aligned_cols=132 Identities=10% Similarity=-0.056 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001110 203 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 203 ~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dh 282 (1155)
.++..+|.+|...|++++|+.++.+.+.. ........++..++.+|..+|+.+.|.+.+++.... +
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~------~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~ 166 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDN------DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--------I 166 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTS------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------C
Confidence 44579999999999999999999998653 112467888999999999999999999999988765 2
Q ss_pred h------hHHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 001110 283 P------NTAATYINVAMMEEGLG--NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 354 (1155)
Q Consensus 283 p------~~a~a~~nLA~iy~~lG--~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkA 354 (1155)
+ +...++..-|.+....| ++.+|..+|+++.+.. ++ ......+++ ++..+|++++|...+++.
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-----p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-----PT-WKTQLGLLN---LHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-----CS-HHHHHHHHH---HHHHHTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-----CC-cccHHHHHH---HHHHcCCHHHHHHHHHHH
Confidence 3 22223333344455556 9999999999965432 11 112334444 899999999999998866
Q ss_pred HHH
Q 001110 355 LQI 357 (1155)
Q Consensus 355 LeI 357 (1155)
++.
T Consensus 238 ~~~ 240 (310)
T 3mv2_B 238 LSD 240 (310)
T ss_dssp HSH
T ss_pred HHh
Confidence 554
No 204
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.11 E-value=0.00018 Score=89.34 Aligned_cols=232 Identities=8% Similarity=-0.054 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 001110 177 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT-IYQQKALDINERELGLDHPDTMKSYGDLAVFYY 255 (1155)
Q Consensus 177 eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAl-e~~eKALei~er~lG~D~p~~a~ay~nLA~iy~ 255 (1155)
......|++||.. .+.....|...|..+...|+.++|. ..|++|+.. .|.....+..++.++.
T Consensus 326 ~Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~ee 389 (679)
T 4e6h_A 326 ARMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLSEQYE 389 (679)
T ss_dssp HHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence 3456678888876 3566788999999999999999997 999999875 2445667888999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhc------CCC--------ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 256 RLQHTELALKYVKRALYLLHLTC------GPS--------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 256 ~lG~yeeAle~yekALei~e~l~------G~d--------hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
..|++++|.+.|++++......+ .+. +.....+|...+.+..+.|+.+.|...|.+|++...
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~---- 465 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK---- 465 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG----
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----
Confidence 99999999999999998642111 011 012455788888888889999999999999987521
Q ss_pred CCcHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchh
Q 001110 322 PDHIQTAASYHAIAIALSLME-AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 400 (1155)
Q Consensus 322 ~dhp~~a~a~~nLA~iy~~lG-dyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~ 400 (1155)
.. ...+|...|.+....+ +++.|...|+++++.+ ++.+..+..+..+. ...+..+.+.++..........
T Consensus 466 ~~---~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-----p~~~~~w~~y~~fe-~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 466 LV---TPDIYLENAYIEYHISKDTKTACKVLELGLKYF-----ATDGEYINKYLDFL-IYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp GS---CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHTTTSSS
T ss_pred CC---ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCchHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhcCC
Confidence 11 1234555666666654 5999999999999874 34455442222221 1233455566655533322110
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 401 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 401 ~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
......++..........|+.+.+.+.++++++.+++
T Consensus 537 -----~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 537 -----SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp -----TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 1135567888888888999999999999999998876
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.11 E-value=5.8e-06 Score=74.65 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAG-AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~-al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
.+.+|..++..|++++|+.+|++++++ +|.... +++++|.+|..+|++++|+.+|++++.+. |
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p 66 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--------P 66 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------C
Confidence 356788899999999999999999987 466677 99999999999999999999999999872 3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
....++.+ +.+.+|+.+|++++..
T Consensus 67 ~~~~~~~~--------~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 67 DSPALQAR--------KMVMDILNFYNKDMYN 90 (99)
T ss_dssp TSTHHHHH--------HHHHHHHHHHCCTTHH
T ss_pred CcHHHHHH--------HHHHHHHHHHHHHhcc
Confidence 33333322 5567778888777665
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.07 E-value=6.3e-06 Score=74.38 Aligned_cols=87 Identities=21% Similarity=0.186 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 206 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK-SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 284 (1155)
Q Consensus 206 ~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~-ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~ 284 (1155)
..+|.++...|++++|+.+|++++.+ .|.... ++.++|.+|..+|++++|+++|++++.+ .+++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~-- 68 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDS-- 68 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTS--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCc--
Confidence 56788999999999999999999986 355566 8999999999999999999999999986 2333
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 285 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 285 ~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
..++.+ +.+.+|+.+|++++...
T Consensus 69 -~~~~~~--------~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 69 -PALQAR--------KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp -THHHHH--------HHHHHHHHHHCCTTHHH
T ss_pred -HHHHHH--------HHHHHHHHHHHHHhccC
Confidence 233322 45667777777766554
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.97 E-value=6.4e-05 Score=86.45 Aligned_cols=140 Identities=13% Similarity=-0.046 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCH----HHHHHHHHHHHH
Q 001110 158 ADGRQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF----NQATIYQQKALD 230 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~Gd---yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gdy----deAle~~eKALe 230 (1155)
..+..++..|+.++..++ +.+|+.+|++|+++ +|..+.++..++.+|.....+ .....-+.+++.
T Consensus 194 ~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp GGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 345667777888877655 57899999999998 788888888888888632111 122233334444
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHH
Q 001110 231 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 310 (1155)
Q Consensus 231 i~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~le 310 (1155)
..... ...+....+|..+|..+...|++++|+.++++|+.+. +. ..+|..+|.++...|++++|++.|.
T Consensus 266 a~~a~--~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 266 NIVTL--PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHHTC--GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhc--ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22111 2235667888889999999999999999999999971 22 4577889999999999999999999
Q ss_pred HHHHHH
Q 001110 311 KALKCN 316 (1155)
Q Consensus 311 kALei~ 316 (1155)
+|+.+.
T Consensus 335 ~AlrL~ 340 (372)
T 3ly7_A 335 TAFNLR 340 (372)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 999984
No 208
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.93 E-value=8.7e-05 Score=84.98 Aligned_cols=154 Identities=10% Similarity=0.058 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHh
Q 001110 159 DGRQLLESSKTALDKG-KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-G-DFNQATIYQQKALDINERE 235 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~G-dyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~-G-dydeAle~~eKALei~er~ 235 (1155)
....+...+.++...| .+++++.++.+++.. +|....+|+..+.++..+ + ++++++.++.+++.+
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~---- 154 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP---- 154 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS----
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh----
Confidence 3556777788888888 599999999999876 688889999999999988 7 889999999888864
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC------
Q 001110 236 LGLDHPDTMKSYGDLAVFYYRLQHTE--------LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN------ 301 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~lG~ye--------eAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~------ 301 (1155)
++....+++..+.++..++.++ ++++++.++++. ++....++++.+.++..+++
T Consensus 155 ----dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 155 ----DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred ----CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchH
Confidence 5777889999999999998888 999999999885 56678899999999999987
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCCh
Q 001110 302 -VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 344 (1155)
Q Consensus 302 -~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdy 344 (1155)
++++++++++++.+. +....+++.+..++...|+-
T Consensus 223 ~~~eELe~~~~aI~~~--------P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI--------PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCC
Confidence 689999999998864 44456777778888776654
No 209
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.82 E-value=0.0028 Score=73.62 Aligned_cols=203 Identities=10% Similarity=0.043 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~-~GdydeAle~~eKALei~er~lG~D 239 (1155)
..++.+|..|...|++++-.+++......+..+ .....+.....|-..+.. -+..+.-++.+.++++.+...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---- 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence 568899999999999999988887766554332 123445555555555543 355677778888888877641
Q ss_pred ChhhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 240 HPDTMK--SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 240 ~p~~a~--ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
...... .-..||.+|+..|+|.+|++.+.+.+.-++.. .+......++.....+|..++++.++..+|.+|..+..
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 222223 34489999999999999999999999887653 34567788899999999999999999999999998876
Q ss_pred HhcCCCcHHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001110 318 RLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~-~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~L 376 (1155)
..+ .+....+.....-|.++. ..++|..|..+|-+++.-+.. .+.+....++.++
T Consensus 171 ai~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~---~~~~~~~~~lkYl 226 (394)
T 3txn_A 171 AIY-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS---VDSVKALTSLKYM 226 (394)
T ss_dssp HSC-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc---cccHHHHHHHHHH
Confidence 543 222345666777888999 899999999999988765532 2334444444443
No 210
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.81 E-value=0.00017 Score=67.31 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D 239 (1155)
+..++.+|..++..|+|..|+.+|++|++...... ........++..||.+|+.+|+++.|+.++++|+.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-------- 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 56688999999999999999999999998864321 112456789999999999999999999999999987
Q ss_pred ChhhHHHHHHHH
Q 001110 240 HPDTMKSYGDLA 251 (1155)
Q Consensus 240 ~p~~a~ay~nLA 251 (1155)
.|....+..|++
T Consensus 76 ~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 DPEHQRANGNLK 87 (104)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHhhHH
Confidence 344455667766
No 211
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.81 E-value=0.00029 Score=87.49 Aligned_cols=175 Identities=13% Similarity=0.004 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC-
Q 001110 160 GRQLLESSKTALDKGKLEDAV-TYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG- 237 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAl-e~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG- 237 (1155)
...++..+..+...|+.++|+ ..|.+|+.. .|.....+..++.++...|+++.|...|++++........
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 445666677778889999997 999999875 3445567888899999999999999999999986421100
Q ss_pred --CCCh-----------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-hH
Q 001110 238 --LDHP-----------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN-VH 303 (1155)
Q Consensus 238 --~D~p-----------~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~-~d 303 (1155)
.+.| ....++...+.+..+.|..+.|...|.+|+... + .....+|...|.+....++ ++
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~----~---~~~~~lyi~~A~lE~~~~~d~e 487 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK----K---LVTPDIYLENAYIEYHISKDTK 487 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----G---GSCTHHHHHHHHHHHTTTSCCH
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----C---CCChHHHHHHHHHHHHhCCCHH
Confidence 0001 245578888888889999999999999998741 1 1123455666777777654 99
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 304 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 304 eAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
.|...|+++++.+ ++.+ ..+...+......|+.+.|..+|++|+..
T Consensus 488 ~Ar~ife~~Lk~~-----p~~~---~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 488 TACKVLELGLKYF-----ATDG---EYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHHHHH-----TTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHC-----CCch---HHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999986 3333 33455677778889999999999999864
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.75 E-value=0.00035 Score=65.20 Aligned_cols=85 Identities=9% Similarity=0.100 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCC
Q 001110 286 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 365 (1155)
Q Consensus 286 a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~d 365 (1155)
+.-++.||..++..|+|..|+.+|++|++....... .......++.+||.+|.++|++++|+.++++++.+ .++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC
Confidence 455789999999999999999999999998743211 12346788999999999999999999999999975 688
Q ss_pred CHHHHHHHHHH
Q 001110 366 DLRTQDAAAWL 376 (1155)
Q Consensus 366 h~~t~~al~~L 376 (1155)
|......+.++
T Consensus 79 ~~~~~~n~~~~ 89 (104)
T 2v5f_A 79 HQRANGNLKYF 89 (104)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHhhHHHH
Confidence 87765444433
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.56 E-value=0.00056 Score=78.65 Aligned_cols=135 Identities=11% Similarity=0.059 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHH
Q 001110 204 AYSLLAVVLYHTG---DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT----ELALKYVKRALYLLHL 276 (1155)
Q Consensus 204 al~nLG~vy~~~G---dydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~y----eeAle~yekALei~e~ 276 (1155)
-++..|..++..+ ++.+|+.+|++|+++ +|+.+.++..++.+|.....+ .....-+.+++.....
T Consensus 198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 3444555555544 358899999999997 688888888888877632111 2222333444442221
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001110 277 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 356 (1155)
Q Consensus 277 l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALe 356 (1155)
-...+..+.++..+|.++...|++++|+.++++|+.+. + ....|..+|.++...|++++|+++|.+|+.
T Consensus 270 --~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~----s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 270 --LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M----SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp --CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 12235556778888888888899999999999999984 2 245678899999999999999999999997
Q ss_pred H
Q 001110 357 I 357 (1155)
Q Consensus 357 I 357 (1155)
+
T Consensus 339 L 339 (372)
T 3ly7_A 339 L 339 (372)
T ss_dssp H
T ss_pred c
Confidence 6
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.43 E-value=0.0017 Score=72.33 Aligned_cols=107 Identities=16% Similarity=0.043 Sum_probs=82.5
Q ss_pred CCChhhHHHHHHHHHHHHh-----cC------CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-----CC
Q 001110 196 PYHRMTAGAYSLLAVVLYH-----TG------DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL-----QH 259 (1155)
Q Consensus 196 ~d~p~~A~al~nLG~vy~~-----~G------dydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~l-----G~ 259 (1155)
..++..+..+++.|.+... .| ...+|...+++|+++- .......+|..||.+|... |+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD------P~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW------PSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC------CCcccCHHHHHHHHHHHhCCCccCCC
Confidence 3456777788888776633 23 2467777888888871 1223567999999999996 99
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHH-CCChHHHHHHHHHHHHHH
Q 001110 260 TELALKYVKRALYLLHLTCGPSHPNT-AATYINVAMMEEG-LGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 260 yeeAle~yekALei~e~l~G~dhp~~-a~a~~nLA~iy~~-lG~~deAle~lekALei~ 316 (1155)
.++|.++|++||++ .|.. +.+++..|..+.. +|++++|..++++|+..-
T Consensus 220 ~ekA~~~ferAL~L--------nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 220 MEKAHTAFEHLTRY--------CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHHH--------CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHh--------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 99999999999998 3432 6677888999888 599999999999999864
No 215
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.36 E-value=0.0063 Score=72.75 Aligned_cols=161 Identities=12% Similarity=0.021 Sum_probs=116.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHHHhcC
Q 001110 167 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD---------FNQATIYQQKALDINERELG 237 (1155)
Q Consensus 167 G~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gd---------ydeAle~~eKALei~er~lG 237 (1155)
-..|.+.|++++|+++|.+..+. .-.|. ..+|+.|-.+|...+. +++|.++|++.... |
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~------Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-----G 100 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRN------GVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-----K 100 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHH------TCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-----T
T ss_pred HHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-----C
Confidence 34667899999999999998764 11233 3456666666654443 66777777665432 2
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
-.| ...+|+.|-..|.+.|++++|+++|++.... | -.|+ ..+|+.|-..|...|++++|.++|++..+.
T Consensus 101 -~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g-~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-- 169 (501)
T 4g26_A 101 -VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF-----G-IQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVES-- 169 (501)
T ss_dssp -CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T-CCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 223 3567899999999999999999999987542 2 1232 567888889999999999999999987642
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
|- .| ...+|..|-.+|.+.|++++|.++|++.-
T Consensus 170 ---G~-~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 170 ---EV-VP-EEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp ---TC-CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CC-CC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 11 12 33567888899999999999999887654
No 216
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.36 E-value=0.016 Score=67.42 Aligned_cols=156 Identities=8% Similarity=-0.039 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 203 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPS 281 (1155)
Q Consensus 203 ~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~l-G~yeeAle~yekALei~e~l~G~d 281 (1155)
.+...||.+|...|++++-.+++......+... ....++....+|-..+... +..+.-++.+..+++..+. +
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~----~ 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ----E 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH----H
Confidence 467889999999999999988887765554321 1233455555555555443 4456666777777776553 2
Q ss_pred ChhHHH--HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 001110 282 HPNTAA--TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 359 (1155)
Q Consensus 282 hp~~a~--a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~k 359 (1155)
...... +-..||.+|...|+|.+|+.++.+.++-+++. .+......++.....+|..++++.++..+|.+|..+..
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 233333 34589999999999999999999999887664 34567788899999999999999999999999988865
Q ss_pred HHcCCCCHHH
Q 001110 360 AKLGPDDLRT 369 (1155)
Q Consensus 360 k~lG~dh~~t 369 (1155)
.. ..||..
T Consensus 171 ai--~~~p~i 178 (394)
T 3txn_A 171 AI--YCPPKV 178 (394)
T ss_dssp HS--CCCHHH
T ss_pred cC--CCCHHH
Confidence 44 245543
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.21 E-value=0.0018 Score=59.86 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001110 199 RMTAGAYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 275 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~Gd---ydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e 275 (1155)
+..+..+..+|.+++..++ .++|..++++||.+ +|....++..+|..++..|+|++|+.+++++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~-- 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS-- 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 4556788999999987666 79999999999997 6778899999999999999999999999999874
Q ss_pred HhcCCCChhHHHHHHHHHH
Q 001110 276 LTCGPSHPNTAATYINVAM 294 (1155)
Q Consensus 276 ~l~G~dhp~~a~a~~nLA~ 294 (1155)
.+..+....+...+..
T Consensus 73 ---~p~~~~~~~i~~~I~~ 88 (93)
T 3bee_A 73 ---NDPNLDRVTIIESINK 88 (93)
T ss_dssp ---CCTTCCHHHHHHHHHH
T ss_pred ---CCCCccHHHHHHHHHH
Confidence 2334444444444433
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.19 E-value=0.008 Score=66.95 Aligned_cols=103 Identities=15% Similarity=0.072 Sum_probs=77.5
Q ss_pred ChhhHHHHHHHHHHHHH-----cCC------HHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHC-----CC
Q 001110 240 HPDTMKSYGDLAVFYYR-----LQH------TELALKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGL-----GN 301 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~-----lG~------yeeAle~yekALei~e~l~G~dhp~--~a~a~~nLA~iy~~l-----G~ 301 (1155)
.+..+..++-.|..... .|. ..+|...+++|+++ +|. ...+|..||.+|... |+
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 34445555655555533 122 46788888888887 344 567999999999996 99
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHH
Q 001110 302 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 302 ~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~-lGdyeeAle~lkkALeI 357 (1155)
.++|..+|++||++. ++. ...+++..|..++. +|++++|..++++|+++
T Consensus 220 ~ekA~~~ferAL~Ln-----P~~--~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 220 MEKAHTAFEHLTRYC-----SAH--DPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHHC-----CTT--CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-----CCC--CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 999999999999986 222 14566778998887 59999999999999975
No 219
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.18 E-value=0.0048 Score=63.20 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL- 238 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~-d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~- 238 (1155)
..+++..+.++..|.|+.|+-+...++.+....... .....+.++..+|.+++..++|..|+.+|++||.+.+.+...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 357777888899999999999999999886542111 122457789999999999999999999999999987643211
Q ss_pred ----------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001110 239 ----------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKR 269 (1155)
Q Consensus 239 ----------------D~p~~a~ay~nLA~iy~~lG~yeeAle~yek 269 (1155)
+........+.+|.||..++++++|+..++.
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1122346778899999999999999988764
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.00 E-value=0.0024 Score=58.98 Aligned_cols=68 Identities=21% Similarity=0.083 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 241 PDTMKSYGDLAVFYYRLQH---TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 241 p~~a~ay~nLA~iy~~lG~---yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+.....+..+|.+++..++ .++|..+++++|.+ +|....+++.+|.+++..|+|++|+.+|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456778889999987766 79999999999996 56778899999999999999999999999998754
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.90 E-value=0.014 Score=59.13 Aligned_cols=82 Identities=22% Similarity=0.124 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHH
Q 001110 177 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG---DFNQATIYQQKALDINERELGLDHP-DTMKSYGDLAV 252 (1155)
Q Consensus 177 eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~G---dydeAle~~eKALei~er~lG~D~p-~~a~ay~nLA~ 252 (1155)
..+.+.|.+.+.. .+....+.+++|+++.+.. ++++++.++++.+.. +.| ....++++||.
T Consensus 15 ~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 15 LKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAV 79 (152)
T ss_dssp HHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHH
Confidence 3455555555432 2346678999999999988 677899999888874 224 56789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHH
Q 001110 253 FYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 253 iy~~lG~yeeAle~yekALei 273 (1155)
.|+++|+|++|++|++++|++
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhc
Confidence 999999999999999999997
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.85 E-value=0.012 Score=59.49 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHH
Q 001110 261 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG---NVHVALRYLHKALKCNQRLLGPDHI-QTAASYHAIAI 336 (1155)
Q Consensus 261 eeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG---~~deAle~lekALei~ek~lG~dhp-~~a~a~~nLA~ 336 (1155)
..+.+.|.+.+.. + +....+.+++|.++.... ++++++.+|++.++.. .+ ....++|+||.
T Consensus 15 ~~~~~~y~~e~~~-----~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-----G---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAV 79 (152)
T ss_dssp HHHHHHHHHHHHT-----T---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-----C---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHH
Confidence 4455555555431 2 235678899999999988 6679999999888742 23 56789999999
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001110 337 ALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 337 iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~L 376 (1155)
.|+++|+|++|+.++++++++ .|++.........+
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~i-----eP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQT-----EPQNNQAKELERLI 114 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHH
Confidence 999999999999999999987 68887766555444
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.77 E-value=0.013 Score=60.06 Aligned_cols=110 Identities=9% Similarity=-0.139 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP-NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp-~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
...++..-...++..+.|+.|+-....++.+...--..-.| ..+.++..+|..++..++|..|+.+|++||.+.+.+..
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777778889999999999999988886542111122 35778999999999999999999999999998864321
Q ss_pred CC-----------------cHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 001110 322 PD-----------------HIQTAASYHAIAIALSLMEAYPLSVQHEQ 352 (1155)
Q Consensus 322 ~d-----------------hp~~a~a~~nLA~iy~~lGdyeeAle~lk 352 (1155)
.. ......+.+.+|.||..++++++|+..++
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 11 11223678999999999999999998765
No 224
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.24 Score=58.19 Aligned_cols=115 Identities=14% Similarity=-0.034 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcC
Q 001110 243 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 321 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d-hp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG 321 (1155)
.+.....||.+|...|++.+|...+..... ..++.. .......+.....+|...+++.+|..++.++........
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~- 211 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQV---ETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP- 211 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-
Confidence 456678899999999999999999988653 334433 344677888899999999999999999999865443331
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 322 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 322 ~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
......+..+...|.++...++|.+|..+|.++++.+...
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 2223456677889999999999999999999998876543
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.41 E-value=0.1 Score=62.34 Aligned_cols=131 Identities=14% Similarity=0.071 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHH
Q 001110 204 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---------TELALKYVKRALYLL 274 (1155)
Q Consensus 204 al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~---------yeeAle~yekALei~ 274 (1155)
.++.+-..|.+.|++++|+.+|++.... | -.|+ ..+|+.|-.+|...+. +++|.++|++....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----G-v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----G-VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----T-CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence 3455557788999999999999988653 2 2233 4466666666655443 57777777765431
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 001110 275 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 354 (1155)
Q Consensus 275 e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkA 354 (1155)
| -.|+ ..+|+.|-..|...|++++|+.+|++..+. |- .| ...+|..|-..|.+.|++++|.+.|++.
T Consensus 100 ----G-~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~-~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 100 ----K-VVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GI-QP-RLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp ----T-CCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC-CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-ccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 1233 457888999999999999999999886542 11 12 2456778888899999999999887754
Q ss_pred H
Q 001110 355 L 355 (1155)
Q Consensus 355 L 355 (1155)
.
T Consensus 167 ~ 167 (501)
T 4g26_A 167 V 167 (501)
T ss_dssp H
T ss_pred H
Confidence 3
No 226
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.43 E-value=0.78 Score=54.44 Aligned_cols=214 Identities=8% Similarity=-0.074 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 001110 177 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 256 (1155)
Q Consensus 177 eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~ 256 (1155)
+.....|++++..+ |.....|...+..+...|+.+.|...|++|+.. +.... .+...+.+
T Consensus 196 ~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~------P~~~~---l~~~y~~~--- 255 (493)
T 2uy1_A 196 SRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM------SDGMF---LSLYYGLV--- 255 (493)
T ss_dssp HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSH---HHHHHHHH---
T ss_pred HHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcHH---HHHHHHhh---
Confidence 34567788887652 445778999999999999999999999999986 12221 22222221
Q ss_pred cCCHHHHHHHHHHHHHHH---HHhcC--CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 001110 257 LQHTELALKYVKRALYLL---HLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 331 (1155)
Q Consensus 257 lG~yeeAle~yekALei~---e~l~G--~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~ 331 (1155)
.+.++. +++....+ ....+ ..+.....+|...+..+.+.+..+.|...|++| .. +. .....+
T Consensus 256 -~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~--~~~~v~ 322 (493)
T 2uy1_A 256 -MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------EG--VGPHVF 322 (493)
T ss_dssp -TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------SC--CCHHHH
T ss_pred -cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------CC--CChHHH
Confidence 111111 22222211 00000 012233466777788887888899999999998 21 11 123455
Q ss_pred HHHHHHHHHcC-ChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHH
Q 001110 332 HAIAIALSLME-AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS 410 (1155)
Q Consensus 332 ~nLA~iy~~lG-dyeeAle~lkkALeI~kk~lG~dh~~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~sva 410 (1155)
...|.+....+ +.+.|...|+++++.+ ++.+..+..+..+ ....+..+.+.++..... ...
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~~~~~~yid~-e~~~~~~~~aR~l~er~~------------k~~ 384 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH-----PDSTLLKEEFFLF-LLRIGDEENARALFKRLE------------KTS 384 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHH-HHHHTCHHHHHHHHHHSC------------CBH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHH------------HHH
Confidence 55666666555 6999999999998753 3445432221111 112223344444443331 113
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001110 411 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 441 (1155)
Q Consensus 411 elL~~Lg~~y~~qGdyeeAle~yeKALeL~~ 441 (1155)
.++..........|+.+.+.+.+++++....
T Consensus 385 ~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 385 RMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 4565666666777999999999999987554
No 227
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.43 Score=55.73 Aligned_cols=126 Identities=10% Similarity=0.066 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHH-hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 001110 223 IYQQKALDINER-ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 301 (1155)
Q Consensus 223 e~~eKALei~er-~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~ 301 (1155)
+-+...+..+++ ..+ ......++..+|.+|++.|++++|.++|.++..... +. ......+..+..++...++
T Consensus 111 ~~l~~~~~~~~~~~~~--e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~--~~kid~~l~~irl~l~~~d 183 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEG--ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI---ST--GAKIDVMLTIARLGFFYND 183 (429)
T ss_dssp HHHHHHHHHHHHCCSC--CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---CC--CSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhccc--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---Ch--HHHHHHHHHHHHHHHHhcc
Confidence 344455554443 222 223456788999999999999999999999877542 22 3457888889999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 302 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 302 ~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+..+..++.+|..+... +.+...........|.++...++|.+|..+|..++..
T Consensus 184 ~~~~~~~~~ka~~~~~~--~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 184 QLYVKEKLEAVNSMIEK--GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHHHHHHHTT--CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhc--CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 99999999999877644 2333344455666788888999999999999877654
No 228
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.26 Score=57.53 Aligned_cols=111 Identities=13% Similarity=0.041 Sum_probs=88.6
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 278 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~ 278 (1155)
.....++..||..|+..|++++|.+.|.++.... .+. ......+..+..++...+++..+..++.++..+...
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-- 200 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA---IST--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-- 200 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH---TCC--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCh--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--
Confidence 3456688999999999999999999999987754 222 345778888999999999999999999999877654
Q ss_pred CCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 279 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 279 G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
+.+...........|.++...++|.+|..+|..++..+
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 23333345566677888899999999999998887654
No 229
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.09 E-value=6 Score=44.86 Aligned_cols=187 Identities=13% Similarity=0.043 Sum_probs=114.0
Q ss_pred HHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001110 166 SSKTALDKGKL---EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 242 (1155)
Q Consensus 166 lG~~yl~~Gdy---eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~ 242 (1155)
.-+..+..|+| =||.+.|+-....+.+. ..+.+....++.=|..+...|++..|.++..-.++++++.--. -
T Consensus 18 rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~--k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~---~ 92 (336)
T 3lpz_A 18 RLQRRIAEGQPEEQYEAAQETRLVAARYSKQ--GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR---V 92 (336)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC---C
T ss_pred HHHHHHhCCCCccccHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC---C
Confidence 33455677888 77777777666554432 3445566677777888888899999988888888887764211 1
Q ss_pred hHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHH-------HH-H
Q 001110 243 TMKSYGDLAVFYYRLQHTE-LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH-------KA-L 313 (1155)
Q Consensus 243 ~a~ay~nLA~iy~~lG~ye-eAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~le-------kA-L 313 (1155)
.......|..++.....-+ .=..+.++|+....+ .|.........+..+|.+|...+++.+|..+|- +. .
T Consensus 93 ~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a 171 (336)
T 3lpz_A 93 DGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLA 171 (336)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHH
Confidence 2245556666666555322 224567777776555 343222234556778999999999999998873 11 1
Q ss_pred HHHHHhcCCCcHHHHHHHH-HHHHHHHHcCChhHHHHHHHHHHHHH
Q 001110 314 KCNQRLLGPDHIQTAASYH-AIAIALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 314 ei~ek~lG~dhp~~a~a~~-nLA~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
++..+......+.....+. ..-..|...++...|...+..-.+.+
T Consensus 172 ~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 172 RMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2222222122222333333 33345567899999988777666554
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.99 E-value=0.51 Score=56.02 Aligned_cols=162 Identities=10% Similarity=-0.039 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---HHHhc
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI---NEREL 236 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei---~er~l 236 (1155)
...++..+..+...|+.++|...|.+|+.. +.... .+...+.. ...+ +. +++.... .+...
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~------P~~~~---l~~~y~~~-~e~~---~~---~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM------SDGMF---LSLYYGLV-MDEE---AV---YGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSH---HHHHHHHH-TTCT---HH---HHHHHHHTC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcHH---HHHHHHhh-cchh---HH---HHHHHHHHHhhccch
Confidence 556777788888999999999999999986 11221 22222222 1111 11 2222211 11000
Q ss_pred C--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-ChHHHHHHHHHHH
Q 001110 237 G--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKAL 313 (1155)
Q Consensus 237 G--~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG-~~deAle~lekAL 313 (1155)
+ .........+...+.++.+.+..+.|...|.+| .. +. .....|...|.+....+ +.+.|...|+.++
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------EG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------SC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------CC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 011233466777888888888999999999998 21 11 12445666677766666 5999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 001110 314 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 354 (1155)
Q Consensus 314 ei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkA 354 (1155)
+.+ ++.+. .+...+......|+.+.|...|+++
T Consensus 348 ~~~-----~~~~~---~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 348 LKH-----PDSTL---LKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHC-----TTCHH---HHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHC-----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 864 33343 2344566777889999999888876
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.63 E-value=0.95 Score=44.33 Aligned_cols=86 Identities=24% Similarity=0.099 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHH
Q 001110 176 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-DTMKSYGDLAVFY 254 (1155)
Q Consensus 176 yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p-~~a~ay~nLA~iy 254 (1155)
+..+...|.+++.. ......+.+++|+++....+... .++.|.+++.++..+.| ..-.+++.||..+
T Consensus 17 l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 44555556655543 22456788999999998776554 34555566555555545 6778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 001110 255 YRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 255 ~~lG~yeeAle~yekALei 273 (1155)
+++|+|++|+++++..|++
T Consensus 85 yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999986
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.86 Score=53.55 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 236 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~-d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~l 236 (1155)
..++....++.++...|+|.+|..++.+...- .++. +.......+....++|...+++.+|..+++++.......
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~E---t~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~- 210 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVE---TYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN- 210 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc-
Confidence 45777788999999999999999999887533 3333 334567788889999999999999999999986543332
Q ss_pred CCCChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 237 GLDHPD-TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 237 G~D~p~-~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
..++. ....+..+|.++...++|.+|-.+|..++.....
T Consensus 211 -~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 211 -PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 23343 4567788899999999999999999999886544
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.09 E-value=0.91 Score=44.47 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHH
Q 001110 260 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI-QTAASYHAIAIAL 338 (1155)
Q Consensus 260 yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp-~~a~a~~nLA~iy 338 (1155)
...+.+.|.+++.. |. ....+.+++|+++....+..+ .++.+.+.+.++..+.+ ..-.+++.||..+
T Consensus 17 l~~~~~~y~~e~~~-----~~---~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-----GS---VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHH-----SC---CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-----CC---CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34455556555442 21 346788999999998877665 22334444444434434 5678899999999
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001110 339 SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 339 ~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~L 376 (1155)
+++|+|++|..+++..|++ .|++.........+
T Consensus 85 yklg~Y~~A~~~~~~lL~~-----eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT-----EPQNNQAKELERLI 117 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence 9999999999999999977 67777665554443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.93 E-value=0.32 Score=49.23 Aligned_cols=106 Identities=18% Similarity=0.072 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001110 202 AGAYSLLAVVLYHTGDF------NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 275 (1155)
Q Consensus 202 A~al~nLG~vy~~~Gdy------deAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e 275 (1155)
...|..........|+. ++-++.|++|+..........-...+..+...|.+ ...++.++|.+.|+.++.+
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~-- 89 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN-- 89 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH--
Confidence 33444445555555776 67777888887754221112233456666777765 5779999999999999986
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 276 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 276 ~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
|...+.++...|....++|+...|...+.+|+.+.
T Consensus 90 ------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 ------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp ------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 22238889999999999999999999999999854
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.73 E-value=0.66 Score=56.92 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001110 202 AGAYSLLAVVLYHTGDFNQATIYQQKA 228 (1155)
Q Consensus 202 A~al~nLG~vy~~~GdydeAle~~eKA 228 (1155)
...|..||..+...++++.|+.+|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 457899999999999999999999886
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.58 E-value=0.95 Score=52.10 Aligned_cols=115 Identities=17% Similarity=-0.003 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CC-----------hhhHHHHHHHHHHHHhcCCHHHHHHH
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YH-----------RMTAGAYSLLAVVLYHTGDFNQATIY 224 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~---d~-----------p~~A~al~nLG~vy~~~GdydeAle~ 224 (1155)
..+.+...|......|+.+.|...+.+|+.++.--+-. .. .....++..++..+...|++.+|+..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34556666666777899999999999999885321111 01 11234455677888899999999999
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 225 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 281 (1155)
Q Consensus 225 ~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~d 281 (1155)
+++++.. +|..-.++..|-.+|+..|+..+|++.|+++...+..-+|-+
T Consensus 194 l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 194 LEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp HHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 9998876 566667888899999999999999999999998877666643
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.51 E-value=12 Score=42.03 Aligned_cols=185 Identities=10% Similarity=-0.053 Sum_probs=113.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 001110 168 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 247 (1155)
Q Consensus 168 ~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay 247 (1155)
+..+..|+|=||.+.|+-....+.+. ..+.+....++.-+..+...|++..|.++..-.++.+++.. .+......
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~~~~ 95 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE---VKVDDISV 95 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCSHHHH
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHH
Confidence 44567788888888887776665443 34455666777778888888999999998888888887742 22233455
Q ss_pred HHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHH-----H---HHHHH
Q 001110 248 GDLAVFYYRLQHTE-LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA-----L---KCNQR 318 (1155)
Q Consensus 248 ~nLA~iy~~lG~ye-eAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekA-----L---ei~ek 318 (1155)
..|..++.....-+ .=.++.++|+....+. |.........+..+|..|...|++.+|..+|-.. - ++..+
T Consensus 96 ~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 96 ARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 56666665543222 2246777777766553 3322223456788899999999999999988421 1 11111
Q ss_pred hcCC---CcHHHHHHHHHHH-HHHHHcCChhHHHHHHHHHHHHH
Q 001110 319 LLGP---DHIQTAASYHAIA-IALSLMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 319 ~lG~---dhp~~a~a~~nLA-~iy~~lGdyeeAle~lkkALeI~ 358 (1155)
.... ..+.....+..-| ..|...|+...|...++.-...+
T Consensus 175 w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 175 WLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 1111 2233333333222 34456788888887776555443
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.27 E-value=0.53 Score=57.74 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRAL 271 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekAL 271 (1155)
...+..||..+...++++.|+++|.++-
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 4578899999999999999999999863
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.08 E-value=0.53 Score=47.63 Aligned_cols=104 Identities=13% Similarity=-0.049 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 001110 245 KSYGDLAVFYYRLQHT------ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~y------eeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek 318 (1155)
..+.+........|+. ++-++.|++|+...--.........+..+...|.. ...++.++|.+.|+.|+.+.
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h-- 90 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC-- 90 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh--
Confidence 3344444455555777 77778888888753221112334567777788866 56699999999999999862
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 319 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 319 ~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
...+.++...|..-.++|+...|...+.+|+..
T Consensus 91 ------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 91 ------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp ------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 112788888899999999999999999999974
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.61 E-value=1.6 Score=54.64 Aligned_cols=123 Identities=14% Similarity=0.020 Sum_probs=81.0
Q ss_pred cCC-HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHhcC---CCC-----
Q 001110 173 KGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL---YHTGDFNQATIYQQKALDINERELG---LDH----- 240 (1155)
Q Consensus 173 ~Gd-yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy---~~~GdydeAle~~eKALei~er~lG---~D~----- 240 (1155)
.++ ++.|+.++++.... +|... .++..+.+. ....+--+|+....++++-....+. ..+
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344 57788888876554 34332 222222222 2223445677777777754322111 111
Q ss_pred --hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 001110 241 --PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 312 (1155)
Q Consensus 241 --p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekA 312 (1155)
+.....+..-+.++...|+|+.|+++.++|..+ .|....+|+.||.+|..+|+|+.|+-.+.-+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122335566688889999999999999999986 4666889999999999999999999877654
No 241
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=91.60 E-value=5.8 Score=43.39 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHH
Q 001110 261 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 261 eeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~-lG~~deAle~lekALei~ 316 (1155)
+.|+..|++|+++....+.+.||.......|.+..|+. +++.++|..+.++|++-.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 57899999999999877889999998888888888776 699999998888877654
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.15 E-value=6.1 Score=51.76 Aligned_cols=103 Identities=13% Similarity=-0.057 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------------HHhc--CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001110 204 AYSLLAVVLYHTGDFNQATIYQQKALDIN-------------EREL--GLDHPDTMKSYGDLAVFYYRLQHTELALKYVK 268 (1155)
Q Consensus 204 al~nLG~vy~~~GdydeAle~~eKALei~-------------er~l--G~D~p~~a~ay~nLA~iy~~lG~yeeAle~ye 268 (1155)
..+.+|.+|...|++++|..+|++|-.-. .... ..........|..+..++...+.++.++++.+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45889999999999999999999873211 0000 00112234567888889999999999999999
Q ss_pred HHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCChHHHHHHHH
Q 001110 269 RALYLLHLTCGPSHPN-TAATYINVAMMEEGLGNVHVALRYLH 310 (1155)
Q Consensus 269 kALei~e~l~G~dhp~-~a~a~~nLA~iy~~lG~~deAle~le 310 (1155)
.|++. .+.+.+. ....|.++-..+...|+|++|...+.
T Consensus 924 lAi~~----~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 924 LADAS----KETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHH----CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHh----ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99875 2334443 34467888888899999999877664
No 243
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.04 E-value=3.1 Score=42.82 Aligned_cols=99 Identities=13% Similarity=0.043 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------H
Q 001110 205 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL----------L 274 (1155)
Q Consensus 205 l~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei----------~ 274 (1155)
-..++.+++..|+|..|+-++. ..+++.+.+.-+.||..+.+|.+|+..++..++- .
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~-------------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLH-------------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-------------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HhhhhhhhhhcchHhHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 4567888899999988876653 2456777788899999999999999999998831 1
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 275 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 275 e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
-..+--+..+.-..+..+|.++.+.|+.++|+.+|.....+.
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 111111223334567788999999999999999999877653
No 244
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.87 E-value=0.74 Score=55.01 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 202 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 202 A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
..++..||.+.+....+..|..+|.+|+.+ .|.....|+.||.++...|+.-+|+-+|.+++..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 457788999999999999999999999998 5888999999999999999999999999999863
No 245
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=90.85 E-value=7.2 Score=42.62 Aligned_cols=156 Identities=16% Similarity=0.138 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hh-----------HHHHHHHHHHHHh---cCCHH--HHH
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-MT-----------AGAYSLLAVVLYH---TGDFN--QAT 222 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p-~~-----------A~al~nLG~vy~~---~Gdyd--eAl 222 (1155)
-..+..+|++.-+.++|++.+.+.+++......+ ..... .. -.+|..+..+-.. .|.-. ..+
T Consensus 31 re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eL-t~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i 109 (261)
T 3ubw_A 31 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVEL-TVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 109 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC-CHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHH
Confidence 3467778888899999999999888876541100 00000 01 1122223222222 23211 111
Q ss_pred H------------HHHHHHHHHHHhcC--CCChhh-HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHh
Q 001110 223 I------------YQQKALDINERELG--LDHPDT-MKSYGDLAVFYYRLQH----------TELALKYVKRALYLLHLT 277 (1155)
Q Consensus 223 e------------~~eKALei~er~lG--~D~p~~-a~ay~nLA~iy~~lG~----------yeeAle~yekALei~e~l 277 (1155)
. ++...|.+....+- ...+.. ...+-..|..|..+-. .+.|++.|++|+++....
T Consensus 110 ~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~ 189 (261)
T 3ubw_A 110 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 189 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 22333444333211 111222 2223345666554322 367899999999999888
Q ss_pred cCCCChhHHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~-lG~~deAle~lekALei~ 316 (1155)
+.+.||.......|.+..|+. +++.++|..+.++|++-.
T Consensus 190 L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 190 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 889999998888888888776 699999999988887755
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.78 E-value=26 Score=39.71 Aligned_cols=153 Identities=13% Similarity=-0.022 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN-QATIYQQKALDINERELGL 238 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gdyd-eAle~~eKALei~er~lG~ 238 (1155)
.+.++.-+..++..|++..|.++..-.++.+.+.--+. .......|..++.....-+ .=..+.++|+....+ .|.
T Consensus 55 idLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~---~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~ 130 (336)
T 3lpz_A 55 VDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRV---DGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGD 130 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCC
Confidence 45567777888999999999999988888877752221 2346667777777665422 234578888888776 344
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-------H-HHHHHHhcCCCChhHHHHHHHHHH-HHHHCCChHHHHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKR-------A-LYLLHLTCGPSHPNTAATYINVAM-MEEGLGNVHVALRYL 309 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yek-------A-Lei~e~l~G~dhp~~a~a~~nLA~-iy~~lG~~deAle~l 309 (1155)
........+..+|..|++.++|.+|..+|-. . ..+.-.......+.....+...|. .|...++...|..++
T Consensus 131 ~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~ 210 (336)
T 3lpz_A 131 YPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAY 210 (336)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3445567788899999999999999888731 1 122122222223444555554454 477889999998877
Q ss_pred HHHHHHH
Q 001110 310 HKALKCN 316 (1155)
Q Consensus 310 ekALei~ 316 (1155)
..-++..
T Consensus 211 ~~f~~~l 217 (336)
T 3lpz_A 211 RIFTSAL 217 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666544
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.60 E-value=1.5 Score=54.92 Aligned_cols=121 Identities=12% Similarity=0.036 Sum_probs=78.5
Q ss_pred cCC-HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHHHHHhc---CCCC-----
Q 001110 215 TGD-FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY--RL-QHTELALKYVKRALYLLHLTC---GPSH----- 282 (1155)
Q Consensus 215 ~Gd-ydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~--~l-G~yeeAle~yekALei~e~l~---G~dh----- 282 (1155)
.++ ++.|+.++++.... .|... .+...+.+.. .. .+=-+|+..+.++++-..... ...+
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444 57788888775543 23322 2222222222 11 223457777877775432211 1111
Q ss_pred --hhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 001110 283 --PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 352 (1155)
Q Consensus 283 --p~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lk 352 (1155)
+.....+...+..+...|+|+-|+.+.++|+.+. |....+|+.|+.+|..+|+|+.|+-.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------PseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--------LDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 2234466677888899999999999999999886 4556889999999999999999997554
No 248
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.50 E-value=0.27 Score=58.76 Aligned_cols=145 Identities=11% Similarity=0.070 Sum_probs=62.2
Q ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHhc-CCCChhhHHHHHHHHHHHHhcCCHHHHHHHH------HH-HHHHHHH-hcC
Q 001110 169 TALDKGKLEDAVTYGTKAL--AKLVAVC-GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ------QK-ALDINER-ELG 237 (1155)
Q Consensus 169 ~yl~~GdyeeAle~~~eAL--el~e~i~-G~d~p~~A~al~nLG~vy~~~GdydeAle~~------eK-ALei~er-~lG 237 (1155)
.+++.++|++|..+....+ +...... -.-+...+.+|+.++.+|...|+........ +. .+..++. .+-
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 4567888999988877665 2222110 0124556788888888888888776643221 11 1122221 223
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 238 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 238 ~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.|....+..++.|-..|...+.|+.|..+..++.-.. ........+..++.+|.++..+++|.+|.++|..|+..+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~---~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPH---TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCT---TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCc---ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3555667788889999999999999999998874110 001234567888999999999999999999999988643
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.37 E-value=1.6 Score=43.57 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=58.4
Q ss_pred CCchHHhHHhhchhhhhhcCChHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 001110 136 SPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLE---DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL 212 (1155)
Q Consensus 136 ~~f~~eDI~~L~pi~K~~~~~s~~A~~Ll~lG~~yl~~Gdye---eAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy 212 (1155)
.++..+++..+...+..-..........|+.|+.+....+-. +++.+++..+.. .....-.+++.||..+
T Consensus 15 ~~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ 87 (144)
T 1y8m_A 15 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGC 87 (144)
T ss_dssp CCCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHH
Confidence 344445554443333222111233566778888887766544 566666665542 1225678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHH
Q 001110 213 YHTGDFNQATIYQQKALDI 231 (1155)
Q Consensus 213 ~~~GdydeAle~~eKALei 231 (1155)
+++|+|++|..+.+..|++
T Consensus 88 ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 88 YKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HTTTCHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHHHHHHHHHhc
Confidence 9999999999999999986
No 250
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=90.24 E-value=7.7 Score=42.39 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHH
Q 001110 261 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 261 eeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~-lG~~deAle~lekALei~e 317 (1155)
+.|++.|++|+++. ..+.+.||.......|.+..|+. +++.++|..+.++|++-..
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai 229 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAI 229 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 57899999999999 77889999998888888888776 7999999999998887553
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.10 E-value=1.9 Score=49.58 Aligned_cols=72 Identities=11% Similarity=-0.024 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCc
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 324 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dh 324 (1155)
.+...++..+...|++++|+..+.+++.. +|..-.++..+-.+|...|+..+|+..|+++.+.+..-+|-+.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45566788899999999999999988765 5655667888899999999999999999999988877666553
No 252
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=89.95 E-value=25 Score=38.20 Aligned_cols=185 Identities=12% Similarity=0.065 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~-~GdydeAle~~eKALei~er~lG~D 239 (1155)
..+..++++.-+.++|++...+.+++... + ......=.+.|..+|-. .|....+...+. .++..+...|.+
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~-----~--~eLt~EERnLLSvAYKNvig~rR~swRiis-sieqke~~~~~~ 76 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTEL-----N--EPLSNEERNLLSVAYKNVVGARRSSWRVIS-SIEQKTSADGNE 76 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----C--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC---CC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----C--CcCCHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHhhccCCH
Confidence 34667788889999999999988887653 1 12233334455555422 121222222211 111111101111
Q ss_pred -ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCh---hHHHHHHHHHHHHHHCCC----------hH
Q 001110 240 -HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP--SHP---NTAATYINVAMMEEGLGN----------VH 303 (1155)
Q Consensus 240 -~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~--dhp---~~a~a~~nLA~iy~~lG~----------~d 303 (1155)
+...+.-|.. .+ -.+=..++...|.+....+-+ ..+ ..+..+-..|..|..+-. .+
T Consensus 77 ~~~~~i~~yr~--ki------e~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~ 148 (248)
T 3uzd_A 77 KKIEMVRAYRE--KI------EKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVE 148 (248)
T ss_dssp C-HHHHHHHHH--HH------HHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HH------HHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHH
Confidence 1111111110 00 012233445555554443211 111 222223334555543321 36
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHH
Q 001110 304 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 304 eAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~-lGdyeeAle~lkkALeI~kk~ 361 (1155)
.|...|++|+++....+.+.||.......|.+..|+. +++.++|....++|++-....
T Consensus 149 ~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~e 207 (248)
T 3uzd_A 149 SSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAE 207 (248)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 7899999999999888899999888888888877765 799999999999888766543
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.88 E-value=2.4 Score=41.88 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHCCChH---HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 285 TAATYINVAMMEEGLGNVH---VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 285 ~a~a~~nLA~iy~~lG~~d---eAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
...+.+++|.++....+.+ +++.+++..++. +....-.+++.||..+.++|+|++|..+.+..+++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---- 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---- 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh----
Confidence 3578889999999887653 566666655542 22346788999999999999999999999988865
Q ss_pred cCCCCHHHHHHHHHH
Q 001110 362 LGPDDLRTQDAAAWL 376 (1155)
Q Consensus 362 lG~dh~~t~~al~~L 376 (1155)
.|++.........+
T Consensus 108 -eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 108 -ERNNKQVGALKSMV 121 (134)
T ss_dssp -CTTCHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHH
Confidence 57777665555444
No 254
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=89.74 E-value=3.3 Score=42.63 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHH----------HH
Q 001110 247 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK----------CN 316 (1155)
Q Consensus 247 y~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALe----------i~ 316 (1155)
...++..++-.|+|..|+-++.. ..++.+.+.-+.+|..+++|..|+..++..++ ..
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 34578888889999888755432 23466667789999999999999999999882 11
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 317 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
.+.+--+..+.-..+..+|.++.+.|+.++|+.++...+.+
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 12222233344556778999999999999999999987654
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.63 E-value=1.7 Score=42.88 Aligned_cols=91 Identities=11% Similarity=0.085 Sum_probs=59.7
Q ss_pred CCCCchHHhHHhhchhhhhhcCChHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 001110 134 SPSPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKL---EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV 210 (1155)
Q Consensus 134 ~a~~f~~eDI~~L~pi~K~~~~~s~~A~~Ll~lG~~yl~~Gdy---eeAle~~~eALel~e~i~G~d~p~~A~al~nLG~ 210 (1155)
...++..+++..+...+..-..........|+.|+.+....+- .+++.++...+.. .....-.+++.||.
T Consensus 14 ~~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAv 86 (134)
T 3o48_A 14 AYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTI 86 (134)
T ss_dssp GGCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHH
Confidence 3345555555544443322111222346677778777776654 3566666665543 22256789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q 001110 211 VLYHTGDFNQATIYQQKALDI 231 (1155)
Q Consensus 211 vy~~~GdydeAle~~eKALei 231 (1155)
.++++|+|++|..+.+..|++
T Consensus 87 g~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 87 GCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHhhhHHHHHHHHHHHHhh
Confidence 999999999999999999886
No 256
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=88.89 E-value=1.1 Score=53.38 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
.++..||.+......++.|..||.+|+.+ .|.....|+.||.+....|+.-+|+-+|.+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 46778999999999999999999999997 5778899999999999999999999999998853
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.48 E-value=2.6 Score=42.11 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHCCChH---HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 284 NTAATYINVAMMEEGLGNVH---VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 284 ~~a~a~~nLA~iy~~lG~~d---eAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
....+.+++|+++....+.+ +++.+++..++. .....-.+++.||..++++|+|++|..+.+..|++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--- 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--- 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---
Confidence 35678899999999887755 566666665542 12245678999999999999999999999988876
Q ss_pred HcCCCCHHHHHHHHHH
Q 001110 361 KLGPDDLRTQDAAAWL 376 (1155)
Q Consensus 361 ~lG~dh~~t~~al~~L 376 (1155)
.|++.+.......+
T Consensus 107 --eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 107 --ERNNKQVGALKSMV 120 (144)
T ss_dssp --CCCCHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHH
Confidence 67777665554433
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.43 E-value=25 Score=39.38 Aligned_cols=153 Identities=7% Similarity=-0.124 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCC
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN-QATIYQQKALDINERELGL 238 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gdyd-eAle~~eKALei~er~lG~ 238 (1155)
.+.++.-+..++..|++..|-++..-.++.+.+..- +........|..++.....-+ .=..+.++|+....+. |.
T Consensus 53 idlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~---~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~ 128 (312)
T 2wpv_A 53 IELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV---KVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SE 128 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CC
Confidence 455666777888999999999998888888777522 223445666777776644322 2356788888887765 33
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhcCCCChhHHHHHHHHHH-HHHHCCChHHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRA-----------LYLLHLTCGPSHPNTAATYINVAM-MEEGLGNVHVAL 306 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekA-----------Lei~e~l~G~dhp~~a~a~~nLA~-iy~~lG~~deAl 306 (1155)
........+..+|..|...+++.+|..+|-.+ +.-|......+.+.....+...|. .|..+++...|.
T Consensus 129 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~ 208 (312)
T 2wpv_A 129 YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAH 208 (312)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHH
Confidence 33455677888999999999999999887421 111111111134555565555554 467889999998
Q ss_pred HHHHHHHHHH
Q 001110 307 RYLHKALKCN 316 (1155)
Q Consensus 307 e~lekALei~ 316 (1155)
.+|..-.+..
T Consensus 209 ~~~~~f~~~~ 218 (312)
T 2wpv_A 209 ESKDIFLERF 218 (312)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887765544
No 259
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.98 E-value=16 Score=42.03 Aligned_cols=108 Identities=10% Similarity=-0.073 Sum_probs=78.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001110 209 AVVLYHTGDFNQATIYQQKALDINERELGL---------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 279 (1155)
Q Consensus 209 G~vy~~~GdydeAle~~eKALei~er~lG~---------D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G 279 (1155)
..+.....+.++|++++.+......+.... .......+...++.+|...++.++|..+++++-.......+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 445566789999999988765443322111 11234566778899999999999999999999988877544
Q ss_pred CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 280 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 280 ~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.+....+..|...+..|...++|..+..++-.++...
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 4444567777778888999999998877777777655
No 260
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.45 E-value=4.6 Score=41.74 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=65.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 001110 169 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 248 (1155)
Q Consensus 169 ~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~ 248 (1155)
..+..|+++.|.++.++. .....|..||......|+++-|+.+|+++-++ .
T Consensus 14 LAL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~ 64 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------------D 64 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------H
T ss_pred HHHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------H
Confidence 346789999988876542 22457899999999999999999999886332 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 001110 249 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 312 (1155)
Q Consensus 249 nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekA 312 (1155)
.|..+|.-.|+.++-.+..+.|.. -| + ++....++..+|++++++++|.+.
T Consensus 65 ~L~~Ly~~tg~~e~L~kla~iA~~-----~g--~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 65 KLSFLYLVTGDVNKLSKMQNIAQT-----RE--D------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH-----TT--C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH-----Cc--c------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 345566667776544333332221 01 1 122234566788888888877653
No 261
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.88 E-value=1.1 Score=53.46 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=61.0
Q ss_pred HHhcCCHHHHHHHHHHHHH--H----HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHh-
Q 001110 212 LYHTGDFNQATIYQQKALD--I----NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYV-------KRALYLLHLT- 277 (1155)
Q Consensus 212 y~~~GdydeAle~~eKALe--i----~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~y-------ekALei~e~l- 277 (1155)
++..+++++|..+....+. . .++.+ +.-.+.+|+.++.++...|+....+... ...+..++..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtl---D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSL---NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhH---HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3457788888887766551 1 12221 2345677787888888888776543211 1222222322
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
+..+....+..++.|-..|...+.|++|..+..++.-. .. .....+.+..++.+|.++..+++|.+|.+++..|+..
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 22344456777788889999999999999999887411 00 0123456778889999999999999999999988853
No 262
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=85.86 E-value=41 Score=36.11 Aligned_cols=187 Identities=14% Similarity=0.034 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCC
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLD 239 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~-~GdydeAle~~eKALei~er~lG~D 239 (1155)
..+..++++.-+.++|++.+.+.+++.... ......=.+.|..+|-. .|....+...+.. ++..+...|.
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~-------~eLt~EERnLLsvayKnvig~rR~swRiiss-ieqk~~~k~~- 76 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMD-------VELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEENKGG- 76 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhccc-------CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHhhccCc-
Confidence 446677888888999999999988887641 12233334445555432 1111122222111 1111110111
Q ss_pred ChhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHHHHCC----------ChHHH
Q 001110 240 HPDTMKSYGDLAVFYYRLQHT-ELALKYVKRALYLLHLTCGP--SHPN-TAATYINVAMMEEGLG----------NVHVA 305 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~y-eeAle~yekALei~e~l~G~--dhp~-~a~a~~nLA~iy~~lG----------~~deA 305 (1155)
. ....+..-|. .+. ++=..++...+.+....+-+ ..+. .+..+-..|..|..+- -.+.|
T Consensus 77 -~----~~~~~i~~yr--~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a 149 (234)
T 2br9_A 77 -E----DKLKMIREYR--QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENS 149 (234)
T ss_dssp -H----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred -h----HHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHH
Confidence 0 0111111111 111 22233455555555443211 1111 1222223344444322 23578
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHHcC
Q 001110 306 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKLG 363 (1155)
Q Consensus 306 le~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~-lGdyeeAle~lkkALeI~kk~lG 363 (1155)
...|++|+++....+.+.||.......|.+..|+. +++.++|....++|++-.-..++
T Consensus 150 ~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~eld 208 (234)
T 2br9_A 150 LVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELD 208 (234)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999888899999888888888877775 79999999999998876655443
No 263
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=85.25 E-value=5.3 Score=51.51 Aligned_cols=106 Identities=9% Similarity=-0.038 Sum_probs=79.8
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
......+|+.|-..|...|+.++|..+|.+...+..+-. .| ...+|+.|-..|.+.|++++|+++|++....
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---- 194 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA---- 194 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Confidence 345566799999999999999999999987655433321 23 3568999999999999999999999987652
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCh-HHHHHHHHHHHH
Q 001110 278 CGPSHPNTAATYINVAMMEEGLGNV-HVALRYLHKALK 314 (1155)
Q Consensus 278 ~G~dhp~~a~a~~nLA~iy~~lG~~-deAle~lekALe 314 (1155)
| -.|+ ..+|+.|-..+.+.|+. ++|.++|++..+
T Consensus 195 -G-~~PD-vvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 195 -G-LTPD-LLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp -T-CCCC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred -C-CCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 2 2333 45677777788888885 788888876554
No 264
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=85.00 E-value=5.2 Score=51.62 Aligned_cols=106 Identities=10% Similarity=-0.091 Sum_probs=78.2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 240 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 240 ~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
......+|+.|-..|.+.|+.++|.++|.+.......-+.+ + ..+|+.|-..|...|++++|+++|++..+.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P---d-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---- 194 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL---T-LDMYNAVMLGWARQGAFKELVYVLFMVKDA---- 194 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC---C-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC---C-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Confidence 34556789999999999999999999998765543332222 2 568899999999999999999999986542
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q 001110 320 LGPDHIQTAASYHAIAIALSLMEAY-PLSVQHEQTTLQ 356 (1155)
Q Consensus 320 lG~dhp~~a~a~~nLA~iy~~lGdy-eeAle~lkkALe 356 (1155)
| -.| ...+|..|-.++.+.|+. ++|..+|++..+
T Consensus 195 -G-~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 195 -G-LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp -T-CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred -C-CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 2 122 235566666788888885 678888876543
No 265
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=84.07 E-value=8.9 Score=41.90 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHH
Q 001110 303 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 303 deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~-lGdyeeAle~lkkALeI~kk 360 (1155)
+.|...|++|+++....+.+.||.......|.+..|+. +++.++|..+.++|++-.-.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~ 210 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 210 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 57899999999999888899999888888888887775 79999999988888765433
No 266
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=83.23 E-value=22 Score=38.80 Aligned_cols=59 Identities=10% Similarity=-0.007 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHH
Q 001110 303 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 303 deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~-lGdyeeAle~lkkALeI~kk~ 361 (1155)
+.|...|++|+++....+.+.||.......|.+..|+. +++.++|....++|++-.-..
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~e 232 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAE 232 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999888899999888888888877765 799999999999888765543
No 267
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.84 E-value=6.9 Score=45.08 Aligned_cols=133 Identities=9% Similarity=-0.076 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------CChhHHHHHH
Q 001110 220 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP---------SHPNTAATYI 290 (1155)
Q Consensus 220 eAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~---------dhp~~a~a~~ 290 (1155)
..+.+|...+.-++..+ +....+. -+..+.....+.++|++++++........... .......+..
T Consensus 57 ~~~~ly~~fi~~f~~ki--n~L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~ 131 (393)
T 4b4t_O 57 LRLRLYDNFVSKFYDKI--NQLSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDS 131 (393)
T ss_dssp CCHHHHHHHHHHHHHHS--CSHHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CHHHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHH
Confidence 33456666665554321 1111111 13345566788999999988765443322211 1123456677
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001110 291 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 357 (1155)
Q Consensus 291 nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI 357 (1155)
.++.+|...|+.++|..+++++-.......+.+....+..|...+..|...++|..+..++-.++..
T Consensus 132 ~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 132 EIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 8899999999999999999999988877655555566777778888888999998877766555544
No 268
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=82.12 E-value=58 Score=34.85 Aligned_cols=179 Identities=8% Similarity=-0.057 Sum_probs=103.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---HHHhcCCCCh
Q 001110 165 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI---NERELGLDHP 241 (1155)
Q Consensus 165 ~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei---~er~lG~D~p 241 (1155)
.++++.-+.++|++...+.+++...+... +. .....-.+.|..+|-. .+...+.+..+ .++-. ....
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~-~~--eLt~EERnLLSvAYKN------vig~rR~swRiissiEqke-k~~~ 80 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFE-NS--EFDDEERHLLTLCIKH------KISDYRTMTSQVLQEQTKQ-LNND 80 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TC--CCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHS-CSCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhcc-CC--CCCHHHHHHHHHHHHH------hhcccHHHHHHHHHHHHHH-cCCH
Confidence 67888889999999999999988732111 11 1233334455555432 12222222222 12211 0111
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HCCChHHHHHHHHHHHHHH
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE-----GLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~-----~lG~~deAle~lekALei~ 316 (1155)
-...+..-|... --.+=...+...+.+....+-+........+-..|..|. ..|+.+.|...|+.|+++.
T Consensus 81 ----~~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA 155 (227)
T 2o8p_A 81 ----ELVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLL 155 (227)
T ss_dssp ----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 111122222111 112233466677777666554433112222233454444 3566889999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHH
Q 001110 317 QRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQIL 358 (1155)
Q Consensus 317 ek~lG~dhp~~a~a~~nLA~iy~-~lGdyeeAle~lkkALeI~ 358 (1155)
...+.+.||.......|.+..|+ -+++.++|..+.++|+++.
T Consensus 156 ~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 156 CEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 88788888877777777777665 6789999999999998865
No 269
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=81.80 E-value=61 Score=34.88 Aligned_cols=187 Identities=14% Similarity=0.112 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCC-
Q 001110 161 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGL- 238 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~-~GdydeAle~~eKALei~er~lG~- 238 (1155)
..+..+|++.-+.++|++...+.+++.... ......=.+.|..+|-. .|....+...+. +++.-+...|.
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~-------~eLs~EERnLLSvaYKNvig~rR~swRiis-sieqke~~~~~~ 80 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKG-------EELSCEERNLLSVAYKNVVGGQRAAWRVLS-SIEQKSNEEGSE 80 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTSTTCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------CcCCHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHHhhcCCH
Confidence 456777888899999999999988887641 12233344555555532 122222222221 11111111121
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHHHH-----CCC-----hHHH
Q 001110 239 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP--SHPN-TAATYINVAMMEEG-----LGN-----VHVA 305 (1155)
Q Consensus 239 D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~--dhp~-~a~a~~nLA~iy~~-----lG~-----~deA 305 (1155)
++...+.-|... + -.+=...+...+.+....+-+ ..+. .+..+-..|..|.. .|+ .+.|
T Consensus 81 ~~~~~i~~yr~k--i------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a 152 (236)
T 3iqu_A 81 EKGPEVREYREK--V------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSA 152 (236)
T ss_dssp CCCSHHHHHHHH--H------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence 122222222111 0 012233445555554432211 1111 12222234555443 233 4678
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHHcC
Q 001110 306 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLG 363 (1155)
Q Consensus 306 le~lekALei~ek~lG~dhp~~a~a~~nLA~iy~-~lGdyeeAle~lkkALeI~kk~lG 363 (1155)
...|++|+++....+.+.||.......|.+..|+ -+++.++|....++|++-....++
T Consensus 153 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~eld 211 (236)
T 3iqu_A 153 RSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLH 211 (236)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988889999988888888887776 569999999999998876655444
No 270
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=81.55 E-value=8.7 Score=39.67 Aligned_cols=100 Identities=9% Similarity=-0.002 Sum_probs=59.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001110 213 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 292 (1155)
Q Consensus 213 ~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nL 292 (1155)
...|+++.|.++.++. +....+..||......|+++-|+++|+++-.+ ..+
T Consensus 16 L~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~~L 66 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------------DKL 66 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------HHH
T ss_pred HhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------HHH
Confidence 4578888887765432 22456888999999999999999999886432 223
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 001110 293 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 354 (1155)
Q Consensus 293 A~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkA 354 (1155)
..+|.-.|+.+.-...-+.|.. .... ...-.++..+|+++++++.|.++
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~-------~g~~------n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQT-------REDF------GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-------TTCH------HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHH-------CccH------HHHHHHHHHcCCHHHHHHHHHHC
Confidence 4445556665443322222211 1111 11233455678888888776543
No 271
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.40 E-value=11 Score=49.29 Aligned_cols=102 Identities=12% Similarity=0.004 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------HHhc--CCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001110 163 LLESSKTALDKGKLEDAVTYGTKALAKL-------------VAVC--GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK 227 (1155)
Q Consensus 163 Ll~lG~~yl~~GdyeeAle~~~eALel~-------------e~i~--G~d~p~~A~al~nLG~vy~~~GdydeAle~~eK 227 (1155)
.|-+|++++..|++++|..+|++|-.-. .... ..........|..+..++...+.++.++++.+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4778999999999999999998873210 0000 011122345677888899999999999999999
Q ss_pred HHHHHHHhcCCCChh-hHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001110 228 ALDINERELGLDHPD-TMKSYGDLAVFYYRLQHTELALKYVK 268 (1155)
Q Consensus 228 ALei~er~lG~D~p~-~a~ay~nLA~iy~~lG~yeeAle~ye 268 (1155)
|++.. +.+.+. ....|.++-..+..+|+|++|...+.
T Consensus 925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99863 233443 33467888888999999999976664
No 272
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=81.32 E-value=23 Score=38.69 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHH
Q 001110 303 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 303 deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~-lGdyeeAle~lkkALeI~kk~ 361 (1155)
+.|...|++|+++. ..+.+.||.......|.+..|+. +++.++|....++|++-.-..
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~e 231 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQ 231 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 57899999999999 77889999888888888887775 799999999999888765443
No 273
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=77.25 E-value=18 Score=38.69 Aligned_cols=69 Identities=7% Similarity=-0.011 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 001110 204 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLL 274 (1155)
Q Consensus 204 al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~-lG~yeeAle~yekALei~ 274 (1155)
.|..++. +..|+.+.|...|++|.+++...+.+.||-......|.+.+|+. +++.++|..+.++|+.+.
T Consensus 129 YyRYlAE--~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 129 ISRYKLE--FGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHHHH--TTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3444444 24567899999999999999887778888777777788877775 688999999999998864
No 274
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=76.72 E-value=25 Score=38.07 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHH
Q 001110 261 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 261 eeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~-lG~~deAle~lekALei~ 316 (1155)
+.|++.|++|+++....+.+.||.......|.+..|+. +++.++|..+.++|++-.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 67899999999999888889999998888888888776 789999999988887755
No 275
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=76.38 E-value=21 Score=38.35 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHH
Q 001110 260 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCNQR 318 (1155)
Q Consensus 260 yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~-lG~~deAle~lekALei~ek 318 (1155)
.+.|++.|++|+++....+.+.||.......|.+..|+. +++.++|..+.++|++-...
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 367899999999999877889999988888888888776 79999999998888875533
No 276
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=74.56 E-value=34 Score=38.97 Aligned_cols=95 Identities=13% Similarity=-0.080 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001110 220 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 297 (1155)
Q Consensus 220 eAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~y--eeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~ 297 (1155)
+-..+.++.|-++-.. ..-.....++.|||.+....--. ..++.+|.+|+...+..++..|. .-|..+|-.++
T Consensus 233 El~~LQq~LLWLLyD~--GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~y 307 (472)
T 3re2_A 233 QLSQLQQELLWLLYDM--GHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYY 307 (472)
T ss_dssp HHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhh
Confidence 3334445555544332 22334567788888876654333 33899999999999998887664 45677899999
Q ss_pred HCCChHHHHHHHHHHHHHHHHh
Q 001110 298 GLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 298 ~lG~~deAle~lekALei~ek~ 319 (1155)
+.+++.+|+.++-+|-+..+..
T Consensus 308 R~~~~reAl~~WA~Aa~Vi~~Y 329 (472)
T 3re2_A 308 RKKKYYEAIASWVDAGYVAGKY 329 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTS
T ss_pred hcchHHHHHHHHHHHHHHHHHc
Confidence 9999999999999988877543
No 277
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=73.90 E-value=1.2e+02 Score=33.83 Aligned_cols=148 Identities=14% Similarity=0.056 Sum_probs=85.6
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHhcCCCC
Q 001110 208 LAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTEL--ALKYVKRALYLLHLTCGPSH 282 (1155)
Q Consensus 208 LG~vy~~~Gd---ydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yee--Ale~yekALei~e~l~G~dh 282 (1155)
-|.+.-..|- -+-|.++|.+|+.+++... .|+.....+...+...+.+...+.+ -..+-.++-....+++ ..
T Consensus 105 ~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~I-sdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~askLL--KK 181 (298)
T 2r17_C 105 GALAAGEIGFENHETVAYEFMSQAFSLYEDEI-SDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLL--KK 181 (298)
T ss_dssp HHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHTCS--SH
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHhcc--Cc
Confidence 3444444444 5678899999999999854 3445555666666666666665421 1122222222223333 24
Q ss_pred hhHHHHHHHHHHHHHH----------CCChHHHHHHHHHHHHHHHHhcCCCcHHHHHH---HHHHHHHHHHcCChhHHHH
Q 001110 283 PNTAATYINVAMMEEG----------LGNVHVALRYLHKALKCNQRLLGPDHIQTAAS---YHAIAIALSLMEAYPLSVQ 349 (1155)
Q Consensus 283 p~~a~a~~nLA~iy~~----------lG~~deAle~lekALei~ek~lG~dhp~~a~a---~~nLA~iy~~lGdyeeAle 349 (1155)
|+-..+.+..+.+++. ..+-+..++++++||++...... ....... ..+.-..|+..|+-.-..+
T Consensus 182 ~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d--~~~~v~LfveILn~ylyff~~g~~~Vt~~ 259 (298)
T 2r17_C 182 PDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD--PSLQVQLFIEILNRYIYFYEKENDAVTIQ 259 (298)
T ss_dssp HHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCC--HHHHHHHHHHHHHHHHHHHTTTCTTSCHH
T ss_pred HHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHhhhhCCCCcccHH
Confidence 6777887778888874 24677999999999999877532 1111111 2334445555665444445
Q ss_pred HHHHHHHHHHH
Q 001110 350 HEQTTLQILRA 360 (1155)
Q Consensus 350 ~lkkALeI~kk 360 (1155)
++...+++.++
T Consensus 260 ~in~LI~lI~~ 270 (298)
T 2r17_C 260 VLNQLIQKIRE 270 (298)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 278
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=72.43 E-value=30 Score=39.36 Aligned_cols=73 Identities=21% Similarity=0.121 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 201 TAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~G--dydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
...++.+||.+-...- ....++.+|.+|+...+..++..|. .-|..+|-+|++.+++.+|++++-.|-...+.
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 4557777777654332 2234899999999999998877663 45777899999999999999999888776543
No 279
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=70.65 E-value=44 Score=38.70 Aligned_cols=93 Identities=17% Similarity=-0.007 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 001110 222 TIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 299 (1155)
Q Consensus 222 le~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~y--eeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~l 299 (1155)
..+.++.|-++-.. ..-.....++.|||.+....--. ..++.+|.+|+...+..++..|. .-|..+|-.|++.
T Consensus 257 ~~LQq~LLWlLyd~--GhL~rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~ 331 (550)
T 3u84_A 257 LQLQQKLLWLLYDL--GHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRN 331 (550)
T ss_dssp HHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc--cchhhCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhc
Confidence 34445555544332 22334567788888776643322 24899999999999998877664 4567789999999
Q ss_pred CChHHHHHHHHHHHHHHHHh
Q 001110 300 GNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 300 G~~deAle~lekALei~ek~ 319 (1155)
+++.+|+.++-+|-+..+.+
T Consensus 332 ~~~reAl~~WA~Aa~Vi~~Y 351 (550)
T 3u84_A 332 RNVREALQAWADTATVIQDY 351 (550)
T ss_dssp TCHHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHHHHHc
Confidence 99999999999888776543
No 280
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=70.16 E-value=90 Score=33.58 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHH
Q 001110 260 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 260 yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~-lG~~deAle~lekALei~ 316 (1155)
.+.|++.|++|+++....+.+.||.......|.+..|+. +++.++|..+.++|++-.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367899999999999888889999998888888888775 589999999988887754
No 281
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=69.25 E-value=60 Score=37.69 Aligned_cols=97 Identities=16% Similarity=-0.019 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001110 218 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 295 (1155)
Q Consensus 218 ydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~y--eeAle~yekALei~e~l~G~dhp~~a~a~~nLA~i 295 (1155)
-.+-..+.++.|-++-.. ..-.....++.+||.+....-.. ..++.+|++|+...+..+...| ..-|..+|-.
T Consensus 238 s~el~~lQq~LLWlLyd~--Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~ 312 (489)
T 4gq4_A 238 SLELLQLQQKLLWLLYDL--GHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGY 312 (489)
T ss_dssp CHHHHHHHHHHHHHHHHH--TTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--cchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchH
Confidence 344445555565554432 22234567888888877644332 3488999999999999887766 4467778999
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHh
Q 001110 296 EEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 296 y~~lG~~deAle~lekALei~ek~ 319 (1155)
+++.++|.+|++++-+|-+.....
T Consensus 313 ~~R~~~~~eAl~~wa~aa~Vi~~Y 336 (489)
T 4gq4_A 313 HCRNRNVREALQAWADTATVIQDY 336 (489)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHhhhHHHHHHHhhhhhhhhhhc
Confidence 999999999999999988776543
No 282
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=69.12 E-value=37 Score=39.32 Aligned_cols=73 Identities=15% Similarity=-0.009 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 201 TAGAYSLLAVVLYHTGDF--NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~Gdy--deAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
...++.+||.+--..--. ..++.+|.+|+...+..++..|. .-|..+|-+|++.+++.+|+.++-.|-...+.
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~ 350 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQD 350 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 345677777665432221 25889999999999998877663 45777899999999999999999888776543
No 283
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=67.60 E-value=58 Score=37.82 Aligned_cols=73 Identities=15% Similarity=0.018 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001110 201 TAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 276 (1155)
Q Consensus 201 ~A~al~nLG~vy~~~G--dydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~ 276 (1155)
...++.+||.+--..- ....++.+|++|+...++.++..| ...|..+|-++++.++|.+|++++-.|-.....
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 3557777777664322 224578999999999999887666 456778999999999999999999998776544
No 284
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=63.51 E-value=42 Score=38.50 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhcCC--C--------------cHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 304 VALRYLHKALKCNQRLLGP--D--------------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 304 eAle~lekALei~ek~lG~--d--------------hp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
++-.+|++|.+........ + +...+.+++..|..+...+++-+|+.+++.|.+.+++.
T Consensus 217 ~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 290 (392)
T 1zb1_A 217 ATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISS 290 (392)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 3456777777766543110 0 01233445556666667778888888887777665543
No 285
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=63.49 E-value=2.9 Score=28.82 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.6
Q ss_pred ccCCCCCCCccCCCCC
Q 001110 956 CNGNSNVPEFIPGPFL 971 (1155)
Q Consensus 956 ~~~~~~~~~~~~~~~~ 971 (1155)
.|+||+.-||+||--+
T Consensus 4 s~lnp~akef~pgvky 19 (26)
T 1jgn_B 4 SNLNPNAKEFVPGVKY 19 (26)
T ss_dssp CSSCTTCCCCCTTSCT
T ss_pred ccCCcchhhcCCCcee
Confidence 4799999999999654
No 286
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=61.45 E-value=2.2e+02 Score=32.28 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 001110 326 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 361 (1155)
Q Consensus 326 ~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~ 361 (1155)
..+.+++..|......+++-+|+.+++.|.+.+++.
T Consensus 250 ~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 285 (363)
T 3rau_A 250 FAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEA 285 (363)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 455667777888888899999999999998877654
No 287
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.21 E-value=52 Score=36.16 Aligned_cols=129 Identities=10% Similarity=0.025 Sum_probs=81.1
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 001110 296 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 375 (1155)
Q Consensus 296 y~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~~t~~al~~ 375 (1155)
+.+.|++++|+..+...++- .|..+.....|-++++-.|+++.|...++.+.++ .++.......+..
T Consensus 7 ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l-----~p~~~~~a~~yr~ 73 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQLRH 73 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CchhhHHHHHHHH
Confidence 45678999999998887764 3556677778899999999999999988877654 3444433333332
Q ss_pred HHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhcC
Q 001110 376 LEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 445 (1155)
Q Consensus 376 La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~kl~~ 445 (1155)
+...+ ...+....+...+.... ....+.+.+. -+......|+.++|...-.+|++..+...+
T Consensus 74 lI~aE----~~R~~vfaG~~~P~~~g---~~~~w~~~ll-~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 74 LVKAA----QARKDFAQGAATAKVLG---ENEELTKSLV-SFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHH----HHHHHHTTSCCCEECCC---SCHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHH----HHHHHHHcCCCCCCCCC---CCHHHHHHHH-HHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 22211 11222333443333111 1223433332 233446679999999999999998877653
No 288
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=60.87 E-value=2.5e+02 Score=32.88 Aligned_cols=70 Identities=9% Similarity=0.036 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--cC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH
Q 001110 205 YSLLAVVLYHTGDFNQATIYQQKALDINERE--LG-LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL-LH 275 (1155)
Q Consensus 205 l~nLG~vy~~~GdydeAle~~eKALei~er~--lG-~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei-~e 275 (1155)
.++|-.+|+++++...+...++ +++-..-. +. ......+..++.+|.+++..++|.+|.+++..|+.. +-
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k-~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFK-NFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHH-THHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 3456689999999999888874 44432100 00 011256778889999999999999999999999987 54
No 289
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=60.77 E-value=45 Score=36.52 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHH-HCCChHHHHHHHHHHHHH
Q 001110 260 TELALKYVKRALYLLHLTC--GPSHPNTAATYINVAMMEE-GLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 260 yeeAle~yekALei~e~l~--G~dhp~~a~a~~nLA~iy~-~lG~~deAle~lekALei 315 (1155)
.+.|++.|++|+++....+ .+.||.......|.+..|+ -+++.++|..+.++|++-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3678999999999998777 8889998888888888877 479999999999999876
No 290
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=59.97 E-value=41 Score=36.85 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHhc--CCCChhhHH
Q 001110 180 VTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGD----------FNQATIYQQKALDINEREL--GLDHPDTMK 245 (1155)
Q Consensus 180 le~~~eALel~e~i~G~--d~p~~A~al~nLG~vy~~~Gd----------ydeAle~~eKALei~er~l--G~D~p~~a~ 245 (1155)
...+...+.+....+-+ ..+...-.+-..|..|+.+-. .+.|...|++|++++...+ .+.||-...
T Consensus 118 ~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLG 197 (268)
T 3efz_A 118 LLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLA 197 (268)
T ss_dssp HHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 34556666665554322 112112223334666654322 4678899999999998877 788888888
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 001110 246 SYGDLAVFYYR-LQHTELALKYVKRALYL 273 (1155)
Q Consensus 246 ay~nLA~iy~~-lG~yeeAle~yekALei 273 (1155)
...|.+.+|+. +++.++|..+.++|++-
T Consensus 198 LaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 198 TILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888885 79999999999998875
No 291
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.71 E-value=2e+02 Score=36.92 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------------HHHHHHhc-------C------CCChhhHH
Q 001110 199 RMTAGAYSLLAVVLYHTGDFNQATIYQQKA--------------------LDINEREL-------G------LDHPDTMK 245 (1155)
Q Consensus 199 p~~A~al~nLG~vy~~~GdydeAle~~eKA--------------------Lei~er~l-------G------~D~p~~a~ 245 (1155)
+..-.+......+|+.+|+|++|+.|...| ++.+.+.. + .-++.+..
T Consensus 67 ~~r~laalvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~ 146 (963)
T 4ady_A 67 SDREMAALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTS 146 (963)
T ss_dssp TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHH
T ss_pred chHHHHHHHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHH
Confidence 344445666788999999999999875443 33321110 0 12345555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHhcCC----CC-hhHHHHHHHHHHHHHHCCChHH-HHHHHHHHHHHHH
Q 001110 246 SYGDLAVFYYRLQHTELALKYVKRA--LYLLHLTCGP----SH-PNTAATYINVAMMEEGLGNVHV-ALRYLHKALKCNQ 317 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~yekA--Lei~e~l~G~----dh-p~~a~a~~nLA~iy~~lG~~de-Ale~lekALei~e 317 (1155)
....+-..++..+.+.+|+.+.-++ |++.++.... +. ....+++..+-.+-...-..++ =..+|+-+++++.
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~ 226 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLM 226 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Confidence 5666777777888898888777665 3333333211 11 1222333222223222333333 2467777888876
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 318 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 318 k~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
+...+ -|..+..++.++++.+.+.+.|.+..
T Consensus 227 k~~~~-------dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 227 NMPNC-------DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HSSSC-------CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCch-------hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64211 24456677778888888888777654
No 292
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=55.10 E-value=40 Score=30.50 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=34.0
Q ss_pred hhcCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 152 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 194 (1155)
Q Consensus 152 ~~~~~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~ 194 (1155)
+....+..+..+...|..+-..|+|++|+.+|.++++.+....
T Consensus 8 ~~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 8 HMDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3344556677888889889999999999999999999876654
No 293
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=52.25 E-value=2.1e+02 Score=32.45 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 359 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~k 359 (1155)
.+.+++..|..+...+++.+|+.+|+.|.+.++
T Consensus 252 ~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~ 284 (376)
T 3r9m_A 252 TAYAYCYHGETLLASDKCGEAIRSLQEAEKLYA 284 (376)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 455666677777777788888887777766543
No 294
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=51.78 E-value=2e+02 Score=36.95 Aligned_cols=175 Identities=12% Similarity=0.065 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001110 157 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 234 (1155)
Q Consensus 157 s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~--d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er 234 (1155)
...+.+++.+|.++...+ .+++.++...+.-...+-|. .......+...||.+|.-.++ +++.+.+...+.
T Consensus 410 ~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~---- 482 (963)
T 4ady_A 410 FIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLY---- 482 (963)
T ss_dssp HHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh----
Confidence 345677888888776555 46777777766542211111 012233456688888877776 445555555543
Q ss_pred hcCCCChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 001110 235 ELGLDHPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 313 (1155)
Q Consensus 235 ~lG~D~p~~-a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekAL 313 (1155)
.++... ..+-..||.++...|+-+....++..+.+ ..+..+.+ ...+|..+...|+.+.+..+.+...
T Consensus 483 ---dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-------~~~e~vrR-~aalgLGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 483 ---NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-------TQHGNITR-GLAVGLALINYGRQELADDLITKML 551 (963)
T ss_dssp ---TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-------CSCHHHHH-HHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-------cCcHHHHH-HHHHHHHhhhCCChHHHHHHHHHHH
Confidence 222222 24556788888888887655555444432 12333222 2344555556677666655544332
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 314 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 314 ei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
.. .+......+.+.+|.+|...|+-..-..++..+.
T Consensus 552 ~~------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 552 AS------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HC------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hC------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 21 2222233345678888999999643333444433
No 295
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.60 E-value=49 Score=42.43 Aligned_cols=71 Identities=13% Similarity=-0.104 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-------------HhcC--CCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 001110 203 GAYSLLAVVLYHTGDFNQATIYQQKALDINE-------------RELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYV 267 (1155)
Q Consensus 203 ~al~nLG~vy~~~GdydeAle~~eKALei~e-------------r~lG--~D~p~~a~ay~nLA~iy~~lG~yeeAle~y 267 (1155)
..-+.+|++|...|++++|..+|++|-.-.. ..+. .........|..+..++...+-++-++++.
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3457899999999999999999998742110 0000 001112346667777777777777777777
Q ss_pred HHHHHH
Q 001110 268 KRALYL 273 (1155)
Q Consensus 268 ekALei 273 (1155)
+.|+..
T Consensus 921 ~lAI~~ 926 (950)
T 4gq2_M 921 LLADAS 926 (950)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 777764
No 296
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=51.21 E-value=1.4e+02 Score=32.79 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=76.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH---
Q 001110 169 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK--- 245 (1155)
Q Consensus 169 ~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~--- 245 (1155)
.++..|++++|+..+...++. +|..+.....|-.+++..|+++.|...++-+.++ +|....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--------~p~~~~~a~ 69 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGAS 69 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhhHHHH
Confidence 456789999999999888765 6888888889999999999999999999888876 233222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 001110 246 SYGDLAVFYYRLQHTELALKYVKRALYLLH--LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~yekALei~e--~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ 316 (1155)
.|.++-. |+..=.+.+.--. .++| ..+... ....-+......|+.++|..+-.+|++..
T Consensus 70 ~yr~lI~----------aE~~R~~vfaG~~~P~~~g-~~~~w~-~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 70 QLRHLVK----------AAQARKDFAQGAATAKVLG-ENEELT-KSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp HHHHHHH----------HHHHHHHHTTSCCCEECCC-SCHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHH----------HHHHHHHHHcCCCCCCCCC-CCHHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 2221111 1111111111000 0111 122322 23344666777899999999999998875
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.98 E-value=2.5e+02 Score=29.46 Aligned_cols=86 Identities=10% Similarity=0.024 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC
Q 001110 265 KYVKRALYLLHLT-CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA 343 (1155)
Q Consensus 265 e~yekALei~e~l-~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGd 343 (1155)
.++++++..+... .-.+++....+|...+..+ ..+...++...|.-.... -.|. ..+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~---~IG~---~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK---GIGT---KLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH---TSST---TBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC---CCcH---HHHHHHHHHHHHHHHcCC
Confidence 4677777665431 1135777888888777765 233366788888765432 2233 356778889999999999
Q ss_pred hhHHHHHHHHHHHH
Q 001110 344 YPLSVQHEQTTLQI 357 (1155)
Q Consensus 344 yeeAle~lkkALeI 357 (1155)
+.+|...|+.+++-
T Consensus 131 ~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 131 FLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998863
No 298
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=48.36 E-value=1.8e+02 Score=35.39 Aligned_cols=132 Identities=9% Similarity=-0.009 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001110 162 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 241 (1155)
Q Consensus 162 ~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p 241 (1155)
.++..+...+...+.+.|..++....... . -...........+|.-+...+...++...+.++... ..+.
T Consensus 216 ~~~~~~~~rlar~d~~~A~~~~~~~~~~~--~--~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~------~~~~ 285 (618)
T 1qsa_A 216 QMAAVAFASVARQDAENARLMIPSLAQAQ--Q--LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQST 285 (618)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHT--T--CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhhhcc--C--CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc------CCCh
Confidence 34444555555668888888887654421 1 122334445556666666666455666666654321 2222
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 314 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALe 314 (1155)
.... ...+. ..+.|+++.|..+|.+.-. .........+.+|..+..+|+.++|..+|+++..
T Consensus 286 ~~~e--~~~r~-Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 286 SLIE--RRVRM-ALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHH--HHHHH-HHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHH--HHHHH-HHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3322 23333 4467999999998865322 2234567789999999999999999999998764
No 299
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=47.82 E-value=1.5e+02 Score=33.87 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 359 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~k 359 (1155)
.+.+++..|..+...+++-+|+.+++.|.+.++
T Consensus 274 ~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~ 306 (380)
T 3c3r_A 274 QANAEYHQSILAKQQKKFGEEIARLQHAAELIK 306 (380)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 344556667777777888888888887776554
No 300
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=46.17 E-value=3.7e+02 Score=33.04 Aligned_cols=214 Identities=14% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH---------------------------HhcCCHHH
Q 001110 168 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL---------------------------YHTGDFNQ 220 (1155)
Q Consensus 168 ~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy---------------------------~~~Gdyde 220 (1155)
.+++-.|+|+.|+.++.+. .....+ ..|.+++.+|.+- +...+..+
T Consensus 302 ~vLlLtgqFE~AI~~L~~~-~~vdAV------H~AIaL~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~ 374 (661)
T 2qx5_A 302 QTLLLSGLYGLAIDYTYTF-SEMDAV------HLAIGLASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRV 374 (661)
T ss_dssp HHHHHTTCHHHHHHHHHTT-CHHHHH------HHHHHHHHTTC-----------------CHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHhhHHHHHHHHHhc-CchhHH------HHHHHHHHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHH
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHHHhcCCCChh--HHHHHHH
Q 001110 221 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKY-------VKRALYLLHLTCGPSHPN--TAATYIN 291 (1155)
Q Consensus 221 Ale~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~-------yekALei~e~l~G~dhp~--~a~a~~n 291 (1155)
|++||--. .+.........++..+..+....++++.=+-. -.-+++-+..+..-+++. .-.+...
T Consensus 375 Al~Y~~li------~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~ 448 (661)
T 2qx5_A 375 AVEYLVLI------TLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQ 448 (661)
T ss_dssp HHHHHHGG------GGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHH
T ss_pred HHHHHHHH------hccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHH
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCCCH----
Q 001110 292 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL---- 367 (1155)
Q Consensus 292 LA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~dh~---- 367 (1155)
.|......|++++|+.+|+-| |+|+.++..+.+++.-.-....-..+
T Consensus 449 aA~~ae~~G~~~dAi~LY~La-----------------------------~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~ 499 (661)
T 2qx5_A 449 AARRADEDGRIYDSILLYQLA-----------------------------EEYDIVITLVNSLLSDTLSASDLDQPLVGP 499 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT-----------------------------TCHHHHHHHHHHHHHHHHHHSCTTSCSSCS
T ss_pred HHHHHHHCCCHHHHHHHHHHh-----------------------------cCHHHHHHHHHHHHHHHhcccccccccccc
Q ss_pred ------HHHHHHHHHHHHHHHhHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHH--HHcCChHHHHHHHHH
Q 001110 368 ------RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTY 435 (1155)
Q Consensus 368 ------~t~~al~~La~l~qk~~e~AeAi~~~~~~~~~~~a~~~~~svaelL~~Lg~~y--~~qGdyeeAle~yeK 435 (1155)
........+...+....... ........ ....+|..|..++ ...|+|++|+..+++
T Consensus 500 ~~~~~~~l~~la~~i~~~y~~~~~~~---------~~~~~~~~---~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 500 DDNSETNPVLLARRMASIYFDNAGIS---------RQIHVKNK---EICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp SCCTTTCHHHHHHHHHHHHTTCHHHH---------TTSCHHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhcCchhh---------hhccHHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 301
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=45.94 E-value=64 Score=30.88 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 194 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~ 194 (1155)
.|..++..|...-..|+|++|+.+|.+|++++...+
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 456677777778889999999999999999877654
No 302
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=41.07 E-value=1.7e+02 Score=33.41 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 288 TYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 288 a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
+++..|..+...+++-+|+.+|+.|.+...
T Consensus 259 A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~ 288 (392)
T 1zb1_A 259 SAYYHGLHLEEENRVGEAIAFLDFSMQQLI 288 (392)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555443
No 303
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=40.81 E-value=1.2e+02 Score=37.67 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 001110 327 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 360 (1155)
Q Consensus 327 ~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk 360 (1155)
.+.+++..|..+...+++-+|+.+++.|...++.
T Consensus 259 ~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~ 292 (704)
T 2xs1_A 259 QANAEYHQSILAKQQYYFGEEIARLQHAAELIKT 292 (704)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence 4556677788888889999999999999887754
No 304
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=39.50 E-value=47 Score=29.90 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 193 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i 193 (1155)
.|..+...|..+-..|+|++|+.+|.++++.+...
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 45667777888889999999999999999987654
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.56 E-value=1.6e+02 Score=37.62 Aligned_cols=71 Identities=13% Similarity=0.027 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------hcC--CCChhHHHHHHHHHHHHHHCCChHHHHHHHH
Q 001110 246 SYGDLAVFYYRLQHTELALKYVKRALYLLHL-------------TCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLH 310 (1155)
Q Consensus 246 ay~nLA~iy~~lG~yeeAle~yekALei~e~-------------l~G--~dhp~~a~a~~nLA~iy~~lG~~deAle~le 310 (1155)
.-+.+|.+|...|++++|..+|++|-.-... ++. +........|..+..++...+-++-++++.+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3477999999999999999999986421100 000 0011123456677777777788888877777
Q ss_pred HHHHHH
Q 001110 311 KALKCN 316 (1155)
Q Consensus 311 kALei~ 316 (1155)
.|+...
T Consensus 922 lAI~~~ 927 (950)
T 4gq2_M 922 LADASK 927 (950)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 777653
No 306
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=38.47 E-value=50 Score=29.63 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 193 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i 193 (1155)
.|..+...|..+-..|+|++|+.+|.++++.+...
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 45667777888889999999999999999887654
No 307
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=38.35 E-value=1e+02 Score=28.34 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH-HHHHHH
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAY-SLLAVV 211 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al-~nLG~v 211 (1155)
..++.++..|..++..++|.+|+.+|+++..+ .+++.+-..+ +.++.|
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec 99 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEEC 99 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHH
Confidence 45788888999999999999999999999876 3456655555 455554
No 308
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=36.59 E-value=4.8e+02 Score=28.90 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHh
Q 001110 161 RQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF--NQATIYQQKALDINERE 235 (1155)
Q Consensus 161 ~~Ll~lG~~yl~~Gd---yeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gdy--deAle~~eKALei~er~ 235 (1155)
+.+++-|.+.-..|- -+-|.++|.+|+.++++.. .+......++..+...+..+.-+ +.-..+..++....-+.
T Consensus 100 rL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~I-sdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~askL 178 (298)
T 2r17_C 100 RLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEI-SDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL 178 (298)
T ss_dssp HHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHhc
Confidence 334444444444444 5668889999999998854 33445556666666656555543 33333444444444443
Q ss_pred cCCCChhhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH---HHHHHHHHHHCCCh
Q 001110 236 LGLDHPDTMKSYGDLAVFYYR----------LQHTELALKYVKRALYLLHLTCGPSHPNTAAT---YINVAMMEEGLGNV 302 (1155)
Q Consensus 236 lG~D~p~~a~ay~nLA~iy~~----------lG~yeeAle~yekALei~e~l~G~dhp~~a~a---~~nLA~iy~~lG~~ 302 (1155)
+ ..++.+.+.+..+.+++. ..+-+..++++++|+.+..... +....... ..|.-..|+..|+-
T Consensus 179 L--KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~--d~~~~v~LfveILn~ylyff~~g~~ 254 (298)
T 2r17_C 179 L--KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCM--DPSLQVQLFIEILNRYIYFYEKEND 254 (298)
T ss_dssp S--SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred c--CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHhhhhCCCC
Confidence 2 347788888888888874 2467899999999999987753 11111222 22344555566665
Q ss_pred HHHHHHHHHHHHHHHH
Q 001110 303 HVALRYLHKALKCNQR 318 (1155)
Q Consensus 303 deAle~lekALei~ek 318 (1155)
.-..+++...+++.+.
T Consensus 255 ~Vt~~~in~LI~lI~~ 270 (298)
T 2r17_C 255 AVTIQVLNQLIQKIRE 270 (298)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHH
Confidence 5555666666666544
No 309
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=35.61 E-value=1.9e+02 Score=35.20 Aligned_cols=128 Identities=12% Similarity=-0.022 Sum_probs=77.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001110 207 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 286 (1155)
Q Consensus 207 nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a 286 (1155)
.++...+...+.+.|...+.+..... ..+..........+|.-+...+...++..++.++.. ........
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~----~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 288 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQ----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM------RSQSTSLI 288 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH------TCCCHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhcc----CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc------cCCChHHH
Confidence 34444455567788887776654321 122233344555566555556645667777776432 11223333
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001110 287 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 355 (1155)
Q Consensus 287 ~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lGdyeeAle~lkkAL 355 (1155)
. ..++. ....|+++.|..+|.+.- ..........+.+|.++..+|+.++|..+|+++.
T Consensus 289 e--~~~r~-Alr~~d~~~a~~~~~~l~--------~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 289 E--RRVRM-ALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp H--HHHHH-HHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H--HHHHH-HHHCCCHHHHHHHHHHcc--------ccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3 22333 345699999999886432 2223456778899999999999999999888765
No 310
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=34.80 E-value=2.6e+02 Score=25.85 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Q 001110 325 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP-DDLRTQDAA 373 (1155)
Q Consensus 325 p~~a~a~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~-dh~~t~~al 373 (1155)
...+..+-..|..+...|+|++|+++.++|...+.+.+.- ....+..++
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SL 61 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSL 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3456677788999999999999999999999887765543 344444443
No 311
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.73 E-value=2.5e+02 Score=26.80 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=25.4
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHHcCC--CCHHHHH
Q 001110 337 ALSLMEAYPLSVQHEQTTLQILRAKLGP--DDLRTQD 371 (1155)
Q Consensus 337 iy~~lGdyeeAle~lkkALeI~kk~lG~--dh~~t~~ 371 (1155)
-.-..|+|++|+.+|..|+++|...+.. .++....
T Consensus 27 e~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~ 63 (117)
T 2cpt_A 27 QEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQ 63 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 3446699999999999999998876532 3454333
No 312
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=33.93 E-value=4e+02 Score=30.06 Aligned_cols=40 Identities=10% Similarity=-0.090 Sum_probs=27.4
Q ss_pred hcCChHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q 001110 153 AACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVA 192 (1155)
Q Consensus 153 ~~~~s~~A~~Ll~lG~~yl~~G---------dyeeAle~~~eALel~e~ 192 (1155)
.......+..++++|.+|.+.+ ....|..+|++|-.++.-
T Consensus 110 ~sl~fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~ 158 (363)
T 3rau_A 110 EDIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAY 158 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 3344566778888887775543 356788888888777643
No 313
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=33.18 E-value=5.8e+02 Score=28.84 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHhhhc
Q 001110 34 VRAFKHIIQAVISAV-GNTQRMAVSIAAALNLMLG 67 (1155)
Q Consensus 34 aRsaKhIlR~~l~~l-~~~~~la~aIshfLNcLLG 67 (1155)
++..+..++..+..- ...+.+..++..++..|+|
T Consensus 38 l~~~R~~l~~~~~~~~~~~~~~~~~l~~Yl~~L~~ 72 (376)
T 3r9m_A 38 LRSSRARLLELFTDLSCNPEMMKNAADSYFSLLQG 72 (376)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 455556666665552 2245666777777777776
No 314
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=33.03 E-value=1.9e+02 Score=26.29 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=25.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Q 001110 289 YINVAMMEEGLGNVHVALRYLHKALKCNQRLL 320 (1155)
Q Consensus 289 ~~nLA~iy~~lG~~deAle~lekALei~ek~l 320 (1155)
+...|.-+...|+|++|+.+|..|++.+...+
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~al 49 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGIDMLLQVL 49 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 44455566778999999999999999886653
No 315
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=32.91 E-value=2e+02 Score=34.08 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001110 261 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 315 (1155)
Q Consensus 261 eeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei 315 (1155)
++|+++|++|+..++++...+++.....+.+++..| +-|-.+|.+|-+.
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~y------E~aGDyy~~AA~k 497 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKH------EMAGDYYVNAARK 497 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhh------hhccHHHHHHHHH
Confidence 568888888888888877778887777777776654 3444555555443
No 316
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.48 E-value=73 Score=29.48 Aligned_cols=36 Identities=14% Similarity=-0.005 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 242 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 277 (1155)
Q Consensus 242 ~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l 277 (1155)
+.+..+...|..+...|+|++|+++.++|...+...
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 456777888999999999999999999998765543
No 317
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=30.79 E-value=1.4e+02 Score=27.20 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001110 159 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 194 (1155)
Q Consensus 159 ~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~ 194 (1155)
.|..+...|..+-..|+|++|+.+|.++++.+...+
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~al 49 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVL 49 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 456677788888899999999999999999877653
No 318
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=30.61 E-value=2.4e+02 Score=33.42 Aligned_cols=69 Identities=19% Similarity=0.039 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001110 219 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 298 (1155)
Q Consensus 219 deAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~yeeAle~yekALei~e~l~G~dhp~~a~a~~nLA~iy~~ 298 (1155)
++|+++|++|+..++++...+++.....|.+++.. |+.|=.+|.+|-+.+ .
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~------yE~aGDyy~~AA~k~-----------------------~ 499 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKK------HEMAGDYYVNAARKA-----------------------L 499 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-----------------------H
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhh------hhhccHHHHHHHHHH-----------------------h
Confidence 67899999999999998888888888777777765 455556666665532 2
Q ss_pred CCChHHHHHHHHHHHHHH
Q 001110 299 LGNVHVALRYLHKALKCN 316 (1155)
Q Consensus 299 lG~~deAle~lekALei~ 316 (1155)
.|..++|..+-.+|-++.
T Consensus 500 yG~~eqAe~l~~~A~~~~ 517 (526)
T 2wb7_A 500 NGDLEQAKIDAEKAKEYS 517 (526)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHH
Confidence 466666666666665543
No 319
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=30.09 E-value=3e+02 Score=24.66 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcC-CCCHHHH
Q 001110 331 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG-PDDLRTQ 370 (1155)
Q Consensus 331 ~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG-~dh~~t~ 370 (1155)
+..-|.-+-..|+|++|+.+|+.|++.+...+. ..++...
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k 59 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKR 59 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Confidence 334444556789999999999999999877653 3345443
No 320
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=29.99 E-value=80 Score=28.37 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 290 INVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 290 ~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
...|.-+...|+|++|+.+|.+|++.+...
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 334555678899999999999999987543
No 321
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=29.72 E-value=1.2e+02 Score=26.90 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 158 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 193 (1155)
Q Consensus 158 ~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i 193 (1155)
..+..+...|...-..|+|++|+.+|.++++++...
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 346667777877888999999999999999987654
No 322
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=28.80 E-value=86 Score=28.05 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=22.6
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 291 NVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 291 nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
..|.-+-..|+|++|+.+|.+|++.+...
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 33455577899999999999999987543
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.74 E-value=1.9e+02 Score=30.84 Aligned_cols=82 Identities=6% Similarity=0.027 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 001110 264 LKYVKRALYLLHLT-CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 342 (1155)
Q Consensus 264 le~yekALei~e~l-~G~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lG 342 (1155)
..++++++..+... .-.+++....+|...+.. .+++..+|.-... +-.| ...+..|...|.++...|
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~---~~IG---~~~AlfYe~wA~~lE~~g 164 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAH---HHIG---QESSIFYEEYANYFESRG 164 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHH---TTCS---TTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHH---CCcc---hhHHHHHHHHHHHHHHcC
Confidence 35666666654321 113567777777766653 1355555554332 2223 345677888999999999
Q ss_pred ChhHHHHHHHHHHHH
Q 001110 343 AYPLSVQHEQTTLQI 357 (1155)
Q Consensus 343 dyeeAle~lkkALeI 357 (1155)
+|.+|...|+.+++-
T Consensus 165 ~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 165 LFQKADEVYQKGKRM 179 (223)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998864
No 324
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.68 E-value=68 Score=28.72 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001110 160 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 193 (1155)
Q Consensus 160 A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i 193 (1155)
.-....+|+-|...|+|+.|+.||+.+++...+.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 4455678899999999999999999999876654
No 325
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.10 E-value=1.3e+02 Score=35.26 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cC-CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-HH
Q 001110 245 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLT--CG-PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC-NQ 317 (1155)
Q Consensus 245 ~ay~nLA~iy~~lG~yeeAle~yekALei~e~l--~G-~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei-~e 317 (1155)
...++|-.+|+++++...|...++ +++-.... +. -.....+..++.+|.++...++|.+|.++|..|++. +.
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k-~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFK-NFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHH-THHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-HhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 344567789999999999987774 34332110 00 012356778899999999999999999999999998 53
No 326
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=27.40 E-value=3.2e+02 Score=31.63 Aligned_cols=30 Identities=10% Similarity=-0.111 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001110 244 MKSYGDLAVFYYRLQHTELALKYVKRALYL 273 (1155)
Q Consensus 244 a~ay~nLA~iy~~lG~yeeAle~yekALei 273 (1155)
...+..|+..+...|+|.+|--++..+..+
T Consensus 11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aal 40 (428)
T 2wm9_A 11 KTWLDSMARIHVKNGDLSEAAMCYVHVTAL 40 (428)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345678999999999999998888765544
No 327
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=27.25 E-value=1.5e+02 Score=26.44 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCC
Q 001110 331 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 364 (1155)
Q Consensus 331 ~~nLA~iy~~lGdyeeAle~lkkALeI~kk~lG~ 364 (1155)
...+|+=|...|+|+.|+.||+.+++...+.+..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~ 48 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYS 48 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 3567888899999999999999999888776544
No 328
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=26.80 E-value=5.7e+02 Score=26.73 Aligned_cols=86 Identities=7% Similarity=-0.002 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Q 001110 181 TYGTKALAKLVAVC-GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 259 (1155)
Q Consensus 181 e~~~eALel~e~i~-G~d~p~~A~al~nLG~vy~~~GdydeAle~~eKALei~er~lG~D~p~~a~ay~nLA~iy~~lG~ 259 (1155)
.++++++..+...- -.+++.....|..++..+ ..+...++.++|..... +-.| ...+..|...|.++...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~---~~IG---~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFN---KGIG---TKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHH---HTSS---TTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHH---CCCc---HHHHHHHHHHHHHHHHcCC
Confidence 46777776654321 135677778888777765 23446678887776544 2233 3457788899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 001110 260 TELALKYVKRALYL 273 (1155)
Q Consensus 260 yeeAle~yekALei 273 (1155)
+.+|.+.|+.+++.
T Consensus 131 ~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 131 FLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999874
No 329
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=26.66 E-value=5.8e+02 Score=28.83 Aligned_cols=37 Identities=14% Similarity=-0.017 Sum_probs=23.7
Q ss_pred CChHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHH
Q 001110 155 CSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLV 191 (1155)
Q Consensus 155 ~~s~~A~~Ll~lG~~yl~~G---------dyeeAle~~~eALel~e 191 (1155)
.....+..++++|.++.+.+ .+..|..+|++|-.++.
T Consensus 137 l~fE~a~VLfNlgal~s~~A~~~~r~~~eglK~A~~~fq~AAG~f~ 182 (380)
T 3c3r_A 137 LGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFL 182 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 34456777777777665432 15677888888876644
No 330
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3
Probab=25.60 E-value=40 Score=39.17 Aligned_cols=55 Identities=29% Similarity=0.481 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCCCCCCCccCCccCCCCCCCCCCCCCCCCcccCCCCCCCccccccCCCCCCCccCCCCCCCCccc
Q 001110 903 SSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQGVPTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLPGYHPM 977 (1155)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1155)
.+||..|+..++.|- .|=-||.+++|.-.| ..||.|++.=-| + +|.++|||--|.
T Consensus 363 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~----~~~~~~~~~~~~ 417 (422)
T 1rmg_A 363 SSSHTSYTTTSTVTA----APSGYSATTMAADLA-TAFGLTASIPIP-----------T----IPTSFYPGLTPY 417 (422)
T ss_dssp CSSCCCCEEEEEECS----CCTTCCCCCCTTCCS-SCCCSSSCCCCC-----------C----CCSCCSTTCCCS
T ss_pred CCCcccccccccccc----CCCCCCCcccccccc-cccCCccccccC-----------C----CCCCcCCCCccc
Confidence 456644443333333 356688889886555 688877654333 2 299999997664
No 331
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=25.54 E-value=3.2e+02 Score=24.08 Aligned_cols=31 Identities=10% Similarity=-0.059 Sum_probs=23.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 001110 289 YINVAMMEEGLGNVHVALRYLHKALKCNQRL 319 (1155)
Q Consensus 289 ~~nLA~iy~~lG~~deAle~lekALei~ek~ 319 (1155)
+...|.-....|+|++|+.+|..|++.+...
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3444555567899999999999999987554
No 332
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=24.55 E-value=85 Score=36.46 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=29.5
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 231 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei 231 (1155)
......++..||++|+.+|+|++|+.+.++++..
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 4455678889999999999999999999999875
No 333
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.32 E-value=4.9e+02 Score=27.60 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhh
Q 001110 408 SVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 442 (1155)
Q Consensus 408 svaelL~~Lg~~y~~qGdyeeAle~yeKALeL~~k 442 (1155)
.++..|...|..+...|+|.+|...|+..++-.-+
T Consensus 148 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 148 ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 46778889999999999999999999999886544
No 334
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=23.70 E-value=1.1e+02 Score=31.76 Aligned_cols=61 Identities=11% Similarity=0.014 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhcCCHH
Q 001110 156 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN 219 (1155)
Q Consensus 156 ~s~~A~~Ll~lG~~yl~~GdyeeAle~~~eALel~e~i~G~d~p~~A~al~nLG~vy~~~Gdyd 219 (1155)
....++..|.+|+.++.+++|.+|.+.+.+|+..+-+. .......++..|--+-+.+|++.
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~---~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS---SQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh---HHHHHHHHHHHHHHHHHHcCCCC
Confidence 34567889999999999999999999999999874321 11223344444544455566643
No 335
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=22.43 E-value=94 Score=36.19 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=29.6
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001110 198 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 231 (1155)
Q Consensus 198 ~p~~A~al~nLG~vy~~~GdydeAle~~eKALei 231 (1155)
......++..||++|+.+|+|++|+.+.++++..
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4456678889999999999999999999999875
No 336
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=21.48 E-value=4.9e+02 Score=32.07 Aligned_cols=32 Identities=9% Similarity=0.015 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 001110 286 AATYINVAMMEEGLGNVHVALRYLHKALKCNQ 317 (1155)
Q Consensus 286 a~a~~nLA~iy~~lG~~deAle~lekALei~e 317 (1155)
+.+++..|..+...+++.+|+.+|+.|.....
T Consensus 260 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~ 291 (704)
T 2xs1_A 260 ANAEYHQSILAKQQYYFGEEIARLQHAAELIK 291 (704)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Confidence 44555666666677777777777777766553
No 337
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=20.90 E-value=3.7e+02 Score=31.12 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001110 202 AGAYSLLAVVLYHTGDFNQATIYQQKALDI 231 (1155)
Q Consensus 202 A~al~nLG~vy~~~GdydeAle~~eKALei 231 (1155)
...+..|+..+...|+|.+|--++..+..+
T Consensus 11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aal 40 (428)
T 2wm9_A 11 KTWLDSMARIHVKNGDLSEAAMCYVHVTAL 40 (428)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456788999999999999999887755543
No 338
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.59 E-value=1.8e+02 Score=29.54 Aligned_cols=81 Identities=15% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 001110 264 LKYVKRALYLLHLTCG-PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 342 (1155)
Q Consensus 264 le~yekALei~e~l~G-~dhp~~a~a~~nLA~iy~~lG~~deAle~lekALei~ek~lG~dhp~~a~a~~nLA~iy~~lG 342 (1155)
..++++++..+...-. .+++....++...+.+. +.+..+|...... .-....+..|...|.++...|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~------~IG~~~AlfY~~wA~~lE~~~ 110 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQ------GIGVSLAQFYISWAEEYEARE 110 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHT------TSSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHC------CcchhhHHHHHHHHHHHHHcC
Q ss_pred ChhHHHHHHHHHHH
Q 001110 343 AYPLSVQHEQTTLQ 356 (1155)
Q Consensus 343 dyeeAle~lkkALe 356 (1155)
++.+|...|+.+++
T Consensus 111 ~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 111 NFRKADAIFQEGIQ 124 (164)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
No 339
>1olg_A Tumor suppressor P53 (oligomerization domain); anti-oncogene; NMR {Homo sapiens} SCOP: a.53.1.1 PDB: 1olh_A 1sae_A 1saf_A 1sag_A 1sah_A 1sai_A 1saj_A 1sak_A 1sal_A 3sak_A
Probab=20.38 E-value=38 Score=26.88 Aligned_cols=14 Identities=43% Similarity=0.964 Sum_probs=11.7
Q ss_pred cCceEEEEEEeeccc
Q 001110 1090 EGEKTFSILVRGRRN 1104 (1155)
Q Consensus 1090 ~~~~~~~~~~~~~~~ 1104 (1155)
|+| .|.+-||||.|
T Consensus 6 D~E-~ftL~VrGRe~ 19 (42)
T 1olg_A 6 DGE-YFTLQIRGRER 19 (42)
T ss_dssp CCC-EEEEEEESHHH
T ss_pred CCC-EEEEEEecHHH
Confidence 444 99999999987
Done!