Query 001111
Match_columns 1154
No_of_seqs 404 out of 2117
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 16:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1932 TATA binding protein a 100.0 2E-165 5E-170 1476.6 66.1 942 1-1006 3-992 (1180)
2 PRK14015 pepN aminopeptidase N 100.0 1.6E-68 3.4E-73 671.2 73.5 545 14-682 14-578 (875)
3 TIGR02414 pepN_proteo aminopep 100.0 1.9E-66 4.1E-71 650.6 73.3 542 16-682 4-566 (863)
4 KOG1046 Puromycin-sensitive am 100.0 1.3E-65 2.8E-70 650.4 45.6 586 13-720 29-634 (882)
5 TIGR02412 pepN_strep_liv amino 100.0 1.5E-64 3.3E-69 641.4 55.3 431 17-523 12-456 (831)
6 TIGR02411 leuko_A4_hydro leuko 100.0 6.7E-62 1.5E-66 595.0 43.3 437 13-519 4-453 (601)
7 COG0308 PepN Aminopeptidase N 100.0 7.9E-59 1.7E-63 588.8 61.1 528 22-682 25-572 (859)
8 PF01433 Peptidase_M1: Peptida 100.0 2.3E-54 4.9E-59 508.9 33.4 372 15-442 2-390 (390)
9 KOG1047 Bifunctional leukotrie 100.0 1.5E-47 3.2E-52 435.5 32.3 449 1-517 1-460 (613)
10 PF13485 Peptidase_MA_2: Pepti 98.7 1E-08 2.2E-13 100.8 4.2 102 346-465 26-128 (128)
11 COG3975 Predicted protease wit 98.6 3.5E-06 7.6E-11 98.6 20.5 226 277-517 182-435 (558)
12 PRK09687 putative lyase; Provi 97.5 0.0062 1.3E-07 69.1 20.4 212 657-928 55-270 (280)
13 PRK09687 putative lyase; Provi 97.2 0.011 2.4E-07 67.1 17.5 176 663-898 98-277 (280)
14 PRK13800 putative oxidoreducta 95.9 0.76 1.6E-05 60.8 23.5 252 654-982 619-894 (897)
15 PRK13800 putative oxidoreducta 95.6 0.41 8.9E-06 63.2 19.3 219 660-927 656-888 (897)
16 KOG1932 TATA binding protein a 94.8 0.03 6.4E-07 71.4 4.8 100 433-538 444-554 (1180)
17 PF13646 HEAT_2: HEAT repeats; 94.7 0.12 2.5E-06 47.4 7.7 71 659-737 3-73 (88)
18 TIGR02270 conserved hypothetic 94.4 1.6 3.4E-05 52.4 18.0 195 657-921 56-251 (410)
19 COG1413 FOG: HEAT repeat [Ener 93.9 2.7 5.9E-05 48.8 18.5 216 656-928 43-263 (335)
20 PF01602 Adaptin_N: Adaptin N 93.8 0.63 1.4E-05 57.4 13.9 205 659-905 83-298 (526)
21 PF05299 Peptidase_M61: M61 gl 92.4 0.081 1.7E-06 52.3 2.3 42 347-388 6-58 (122)
22 PF10460 Peptidase_M30: Peptid 92.3 0.5 1.1E-05 55.1 8.8 138 346-509 140-285 (366)
23 PF13646 HEAT_2: HEAT repeats; 91.0 1.2 2.6E-05 40.6 8.4 87 692-814 2-88 (88)
24 PF07607 DUF1570: Protein of u 90.9 0.12 2.6E-06 51.5 1.7 37 348-385 4-43 (128)
25 KOG1062 Vesicle coat complex A 90.1 12 0.00026 47.3 17.9 71 668-742 119-191 (866)
26 KOG0946 ER-Golgi vesicle-tethe 90.1 3.1 6.6E-05 52.1 12.8 230 644-919 109-359 (970)
27 PF01602 Adaptin_N: Adaptin N 89.4 13 0.00028 45.9 18.3 238 655-929 113-360 (526)
28 PF04450 BSP: Peptidase of pla 87.4 1.5 3.3E-05 47.5 7.1 171 281-504 26-204 (205)
29 PF01347 Vitellogenin_N: Lipop 85.1 1.9 4.1E-05 54.6 7.6 129 776-927 481-609 (618)
30 smart00638 LPD_N Lipoprotein N 84.8 16 0.00035 45.9 15.5 146 759-927 412-565 (574)
31 PTZ00429 beta-adaptin; Provisi 82.2 94 0.002 40.4 20.8 60 659-720 105-169 (746)
32 PF03130 HEAT_PBS: PBS lyase H 74.5 4.1 8.8E-05 29.2 3.2 26 707-736 1-26 (27)
33 smart00567 EZ_HEAT E-Z type HE 74.1 3.2 6.8E-05 30.2 2.6 27 705-735 1-27 (30)
34 KOG1824 TATA-binding protein-i 72.6 2E+02 0.0044 37.7 18.8 183 700-927 341-536 (1233)
35 PF11864 DUF3384: Domain of un 72.2 2.4E+02 0.0053 34.5 19.9 127 664-816 37-184 (464)
36 TIGR02270 conserved hypothetic 67.7 1.9E+02 0.004 35.0 17.0 199 653-924 24-224 (410)
37 PF03272 Enhancin: Viral enhan 66.1 1.6E+02 0.0034 38.6 16.9 123 253-385 135-276 (775)
38 PF13513 HEAT_EZ: HEAT-like re 62.2 21 0.00045 29.6 5.6 44 673-718 4-55 (55)
39 KOG0567 HEAT repeat-containing 61.9 14 0.0003 41.3 5.5 53 669-723 200-252 (289)
40 PF11940 DUF3458: Domain of un 59.1 3.7E+02 0.0081 32.0 20.7 40 643-682 73-112 (367)
41 PF02985 HEAT: HEAT repeat; I 58.5 13 0.00027 27.4 3.2 26 692-719 3-28 (31)
42 PF10026 DUF2268: Predicted Zn 57.8 29 0.00064 37.3 7.2 41 345-385 65-109 (195)
43 COG1413 FOG: HEAT repeat [Ener 57.6 1E+02 0.0023 35.6 12.4 16 887-902 288-303 (335)
44 PF10023 DUF2265: Predicted am 57.0 13 0.00028 43.2 4.4 38 345-388 165-202 (337)
45 KOG1240 Protein kinase contain 55.6 42 0.00092 44.6 8.9 56 919-982 586-641 (1431)
46 KOG0567 HEAT repeat-containing 55.6 1.1E+02 0.0024 34.5 11.0 71 659-735 39-109 (289)
47 COG4324 Predicted aminopeptida 51.2 14 0.00031 40.8 3.4 36 346-387 198-233 (376)
48 KOG1240 Protein kinase contain 48.0 7.9E+02 0.017 33.6 18.2 297 658-998 425-742 (1431)
49 PF12315 DUF3633: Protein of u 45.1 30 0.00065 37.4 4.6 41 346-388 94-134 (212)
50 PF13513 HEAT_EZ: HEAT-like re 45.1 36 0.00078 28.2 4.3 17 705-721 1-17 (55)
51 KOG2171 Karyopherin (importin) 43.7 4E+02 0.0086 35.8 14.9 61 658-720 120-188 (1075)
52 smart00731 SprT SprT homologue 43.7 28 0.0006 35.6 4.1 15 345-359 59-73 (146)
53 KOG2171 Karyopherin (importin) 42.0 7.7E+02 0.017 33.3 17.1 65 655-721 347-419 (1075)
54 smart00638 LPD_N Lipoprotein N 40.5 8.4E+02 0.018 30.6 20.2 181 705-928 340-535 (574)
55 PF01863 DUF45: Protein of unk 37.5 76 0.0016 34.0 6.5 68 279-360 108-179 (205)
56 PF10263 SprT-like: SprT-like 36.9 74 0.0016 32.6 6.0 18 344-361 59-76 (157)
57 PF13699 DUF4157: Domain of un 35.7 63 0.0014 29.6 4.6 67 288-357 6-73 (79)
58 KOG2259 Uncharacterized conser 32.0 1.7E+02 0.0037 36.9 8.6 157 690-871 374-563 (823)
59 PF12719 Cnd3: Nuclear condens 31.4 3.5E+02 0.0075 31.0 11.0 90 887-985 77-183 (298)
60 PF05918 API5: Apoptosis inhib 31.3 7.9E+02 0.017 31.0 14.3 46 678-725 48-93 (556)
61 PTZ00429 beta-adaptin; Provisi 30.6 1.4E+03 0.029 30.1 22.0 248 658-941 142-397 (746)
62 KOG4224 Armadillo repeat prote 30.4 1.2E+02 0.0025 35.6 6.5 125 689-815 251-428 (550)
63 PF06685 DUF1186: Protein of u 29.8 1.7E+02 0.0036 32.9 7.6 78 757-846 126-203 (249)
64 KOG1061 Vesicle coat complex A 29.7 9.2E+02 0.02 31.2 14.6 118 841-963 320-448 (734)
65 KOG2973 Uncharacterized conser 29.6 8.6E+02 0.019 28.3 12.9 136 666-818 13-164 (353)
66 KOG1248 Uncharacterized conser 29.1 1.2E+03 0.026 31.8 15.8 138 841-986 701-855 (1176)
67 PRK04860 hypothetical protein; 29.1 1.1E+02 0.0023 32.1 5.6 66 283-357 7-75 (160)
68 KOG4535 HEAT and armadillo rep 28.1 26 0.00056 42.0 1.0 70 690-771 574-651 (728)
69 KOG4653 Uncharacterized conser 26.6 1E+03 0.022 31.5 14.1 243 634-902 627-917 (982)
70 PF12725 DUF3810: Protein of u 25.5 1.8E+02 0.0038 33.9 7.2 46 347-405 198-243 (318)
71 PF04826 Arm_2: Armadillo-like 25.3 1E+03 0.022 26.8 13.2 64 657-722 14-85 (254)
72 KOG1991 Nuclear transport rece 23.0 1.7E+03 0.037 29.9 15.4 103 826-928 408-520 (1010)
73 KOG1060 Vesicle coat complex A 22.4 1.4E+03 0.03 30.0 14.0 184 705-936 371-569 (968)
74 PF12755 Vac14_Fab1_bd: Vacuol 21.0 1.6E+02 0.0034 28.1 4.6 41 886-928 39-85 (97)
75 PF01447 Peptidase_M4: Thermol 20.0 3.7E+02 0.0079 27.8 7.4 27 276-303 67-93 (150)
No 1
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=2.2e-165 Score=1476.60 Aligned_cols=942 Identities=36% Similarity=0.583 Sum_probs=786.5
Q ss_pred CCCCCCCCCCC----CCCCCCCeEEEEEEEEEE-EECCCcEEEEEEEEEEEe--CCccEEEEEcCCceeEEEEEcCeeee
Q 001111 1 MAKPRKPKNEE----TKVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE 73 (1154)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~L~I~~V~Vng~~~~ 73 (1154)
|++.|++++.. ...++++..++||+|+|+ |||+++++.|.|||+|.+ ++++.|.|||++|+|.+|.|||.++.
T Consensus 3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~ 82 (1180)
T KOG1932|consen 3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK 82 (1180)
T ss_pred cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence 56677776633 457777788999999998 999999999999999984 68999999999999999999999999
Q ss_pred eEecCCCCccchhhhhhcccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeeccccccc
Q 001111 74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN 153 (1154)
Q Consensus 74 f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~ 153 (1154)
|.|+|+ ++....+..|.... .+...++.....|... .++.|+|.|.++++.... +.+ ..
T Consensus 83 f~y~d~-~q~~~~~~~~~~~l-~~~s~~~~~~~~y~~l--~~~~g~L~I~ipk~~~~~--~ee---------------~~ 141 (1180)
T KOG1932|consen 83 FIYNDP-TQNDCTDEIWQRVL-DPASQSHFLAVQYEDL--DEDNGELLIKIPKESKKV--GEE---------------LK 141 (1180)
T ss_pred eeecch-hhhhhhhhhhhhhh-hhhhhhhhHHHhhhcc--ccCCCeEEEEcCchhhhh--hhh---------------cc
Confidence 999987 45443344443211 1111122222233222 224689999876542211 111 01
Q ss_pred ceeEEEEEEEecccccceeccc---------eEEeccccC--CCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceee
Q 001111 154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQIR--RARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY 222 (1154)
Q Consensus 154 ~~~v~i~y~~~~p~~G~~F~~~---------~~~Tq~ep~--~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~ 222 (1154)
...++|+|.+++|..|++|+++ +++|.+.+. +||+||||+|+++++|||+|++++|++++++++|+|.+
T Consensus 142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~ 221 (1180)
T KOG1932|consen 142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE 221 (1180)
T ss_pred ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence 2347799999999999999754 466666543 68999999999999999999999999999999999999
Q ss_pred eeeecCCCCcEEEEEEeccccchhhhhhhccCeEEEecCCCCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001111 223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF 302 (1154)
Q Consensus 223 ~~~~~~d~~~kt~~F~~t~P~sayliafaVG~F~~~~~~~~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf 302 (1154)
++.++ |.+++|++|+.+.|+++.+||||||+|+.+.++.+.++++||+|+..+.+++++-++.++++|||++||..|||
T Consensus 222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF 300 (1180)
T KOG1932|consen 222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF 300 (1180)
T ss_pred eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 98876 88999999999999999999999999999988889999999999999999999999999999999999988999
Q ss_pred CCccEEEeCCCccccccccCceeeeeccccccCcccchhhhhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHH
Q 001111 303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (1154)
Q Consensus 303 ~ky~~VfVp~~~~~~~~~~gagLii~s~~LL~~~~~~d~~~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~ 382 (1154)
+.|++||||+.+. .....++|.|+++++||+.++||+.+.+++.+|.+||.||||++|||..|+|.||.+|+|+|+..
T Consensus 301 ~~~k~VFvd~~~~--~i~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~ 378 (1180)
T KOG1932|consen 301 SCYKTVFVDEAAV--EISSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG 378 (1180)
T ss_pred ceeeEEEecCCcc--eeeecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence 9999999996432 23455689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHhhhhhhccc-CCCccccCCCccccCCCCccccccccceeccHHHHHHHHHHHh----chHH
Q 001111 383 SFIKKFLGNNEARYRRYKANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF 457 (1154)
Q Consensus 383 l~~~~~~G~ne~r~~~~~~~~~~~~~d~-~~~~~L~s~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~l----G~e~ 457 (1154)
+|+++++|+|||||+.++..++++..|. .++..+.. |++++ ..| -.|+++.+|.+.+++ |.-.
T Consensus 379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s---~k~----~~~~~~~lh~~~r~~~~~s~~~~ 446 (1180)
T KOG1932|consen 379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPS---MKF----KLKGPFHLHISIRHLHTLSGSYG 446 (1180)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcc---hhh----cccCcceeeecccceeecChhHH
Confidence 9999999999999999999999998887 34443331 11111 001 345666666665554 2334
Q ss_pred HHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHhcCCCCccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeecc
Q 001111 458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536 (1154)
Q Consensus 458 F~~~L~~yl~~~~~~~-~~~tlst~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~ 536 (1154)
....+++.+...+.++ .+...+.+.|+++++.++.. .++.||++|+++.|+|.+.+.+.||++++.|++.+.|.++
T Consensus 447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~---~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~ 523 (1180)
T KOG1932|consen 447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM---LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR 523 (1180)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh---HHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence 4555555555555554 22234556666666665531 2589999999999999999999999999999999999665
Q ss_pred CCCCCCCCccC------CCCCCCCC----CCCCCcceeEEEEEEecCCccccccccCCCCceEEEeeeccchhhHhhhcC
Q 001111 537 VKPDSRTPVLS------SNTDSENR----DGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK 606 (1154)
Q Consensus 537 ~~~~~~~~~~~------~~~~~~~~----~~~~~~~gpmtvri~E~DGt~eh~v~~~~~~~~~~~ei~~~sK~~~rR~~k 606 (1154)
....+..++.+ ...+.+++ .+...|+|||||||||+||||+|++ +| ++.|++.||||||| +|++|
T Consensus 524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi-~~~~~k~dI~chsK---~R~~k 598 (1180)
T KOG1932|consen 524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QI-DGDFTKLDIQCHSK---SRRQK 598 (1180)
T ss_pred hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Ee-cCcccccceeeccc---ccccC
Confidence 54433222111 01111111 1224599999999999999999986 45 45699999999999 45578
Q ss_pred CCCCCCCCCCCCCCCcccccccccCCCCCceEEEEcCCCcEEEEEecCCCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCC
Q 001111 607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL 686 (1154)
Q Consensus 607 ~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~~WIRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~ 686 (1154)
+||.++.+|||+++| +++||. ++|++|||+||||||||+|+++||+|||++||++||||+||+|||++|++.|++
T Consensus 599 kKk~~l~sgEE~e~d-l~~~d~----~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~ 673 (1180)
T KOG1932|consen 599 KKKVPLMSGEEIEMD-LTNMDE----ESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST 673 (1180)
T ss_pred CcCCCCCChhhhccc-ccccCc----cCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence 899999999999988 878773 899999999999999999999999999999999999999999999999999865
Q ss_pred chhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 001111 687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH 766 (1154)
Q Consensus 687 s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ 766 (1154)
..++||+|||.|+|||||||++||+||+++++++.+|.|++||+++|++.||+.+++|||||||+|||+|||||+||.
T Consensus 674 --~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~ 751 (1180)
T KOG1932|consen 674 --ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV 751 (1180)
T ss_pred --hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccHH-------------HHHHHHHHH
Q 001111 767 AVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSIL-------------FLSSLLKRI 833 (1154)
Q Consensus 767 ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~~~~~~~-------------~~~~~~~ei 833 (1154)
|||.+|+.+|+||.+|++||||||||||||+|+|||+||+|+||+||++..++..+.. +...++.||
T Consensus 752 a~a~lR~~~g~cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ei 831 (1180)
T KOG1932|consen 752 AFASLRGREGKCPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLIDEI 831 (1180)
T ss_pred HHHHhccccCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877644322 234599999
Q ss_pred HHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccCCchHHHH
Q 001111 834 DRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALS 913 (1154)
Q Consensus 834 ~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~ 913 (1154)
+|+|+||+++|||.++|+++||+++.+++ ..|++|.++ ..+..|++++.+.++|++|++++++++.. +|..++|.
T Consensus 832 ~r~L~~e~l~pS~k~ii~~~~l~~~~~l~--k~~hl~s~p--~~~~~~a~~~~~vd~r~~a~~~~v~~~~~-~~~~~~l~ 906 (1180)
T KOG1932|consen 832 TRLLNMEKLMPSFKHIIKVSALKAIRELQ--KSGHLPSLP--ELLESYAEEGSFVDVRICAEELNVDLGGV-DGSPDDLA 906 (1180)
T ss_pred HHHHHHHhhchhhhceEEeeechhhhhhh--hccccccCc--hhhhccccccchhhhHHHhhhhhhhhccc-CCChHHHH
Confidence 99999999999999999999999999985 589999988 45789999999999999999999999764 55568999
Q ss_pred HHHHHhccCccchhhhhHHHHHhh-hhhhccCCCCCCCCChHHHHHHHHHHhccccccchhhHhhHHHHHHHhhcCCccc
Q 001111 914 LFIKSVEEEPSLRGQVKLGIHAMR-ICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTL 992 (1154)
Q Consensus 914 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~~~~~~l 992 (1154)
++++.++.||++..|+++...+.. ..++.+++ +.+.++.+.+++++|.+++.+...|..+||.+.+. |++|
T Consensus 907 ~~leil~~~~dp~~R~~i~~ml~~~~np~~~~~-~~s~~~~~~~~~~~~~~~~~~k~~D~~~r~~v~d~-------~~~L 978 (1180)
T KOG1932|consen 907 YILEILENDPDPVIRHKILDMLSQSNNPVTKGG-TESDLLKEALVERLWKLKNLSKEPDICSRSSVLDV-------YIAL 978 (1180)
T ss_pred HHhhhcccCcchHHHHHHHHHhhccCCceeecc-ccCccccHHHHHhhhhhhccCCCCCeEeEeehhhh-------hhhe
Confidence 999999999888888876666655 66776665 56799999999999999999989999999998888 9999
Q ss_pred cCCCCCcccccCCC
Q 001111 993 YGVPRDKLLLLGDG 1006 (1154)
Q Consensus 993 ~g~~~~~~~~~~~~ 1006 (1154)
||..++.++..+..
T Consensus 979 ~~~~~~~~~~a~E~ 992 (1180)
T KOG1932|consen 979 FGLGRPNILGAPEI 992 (1180)
T ss_pred eecCCcccccchhh
Confidence 99999988877765
No 2
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=1.6e-68 Score=671.22 Aligned_cols=545 Identities=16% Similarity=0.209 Sum_probs=409.6
Q ss_pred CCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEe--CCccEEEEEcCCceeEEEEEcCeee---eeEecCCCCccchhhh
Q 001111 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPT---EFEYYPHNHQNVENEK 88 (1154)
Q Consensus 14 ~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~L~I~~V~Vng~~~---~f~~~~~~~~~~~~~~ 88 (1154)
....+|.+.||+|+|++|+++..++|.++|+..+ .+++.|.||+++|+|.+|.+||+++ .|.+.+
T Consensus 14 y~~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~~~~~~~~~~~~---------- 83 (875)
T PRK14015 14 YRPPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQPLAPSAYELDE---------- 83 (875)
T ss_pred cCCCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCEEcCccceEEcC----------
Confidence 4456899999999999999999999999998765 4568999999999999999999877 454432
Q ss_pred hhcccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccccceeEEEEEEEecccc
Q 001111 89 RWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEV 168 (1154)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~ 168 (1154)
..|+|.. + +. .++++ +.|.+.+..+. +-.
T Consensus 84 -----------------------------~~L~I~~--l----~~---~~~l~--I~y~~~P~~n~-----------~l~ 112 (875)
T PRK14015 84 -----------------------------EGLTIEN--L----PD---RFTLE--IETEIDPEANT-----------ALE 112 (875)
T ss_pred -----------------------------CEEEEec--C----Cc---cEEEE--EEEEEecCCCC-----------Cce
Confidence 1366641 1 11 12333 34444443211 012
Q ss_pred cceeccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcC-Cc-EEEecCceeeeeeecCCCCcEEEEEEeccccchh
Q 001111 169 GIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQ-NL-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAK 246 (1154)
Q Consensus 169 G~~F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~-~~-~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~say 246 (1154)
|+++...+++|||||++||+||||+|+|+.|+||+++|++|+ .| +++|||+++++.. .++++++++|+.++|||+|
T Consensus 113 Gly~s~~~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~--~~~g~~~~~w~~~~PmpsY 190 (875)
T PRK14015 113 GLYRSGGMFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGE--LPDGRHWATWEDPFPKPSY 190 (875)
T ss_pred eeEEECCEEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCcccccee--ccCCeEEEEEEeCCCcccc
Confidence 333323368999999999999999999999999999999999 58 6899999987642 3568899999999999999
Q ss_pred hhhhhccCeEEEecC----C--CCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccc
Q 001111 247 WITLAVAPFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSST 320 (1154)
Q Consensus 247 liafaVG~F~~~~~~----~--~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~ 320 (1154)
+++|+||+|+.+++. . +.++++|+.|+..+.+.++++.++++|+|||++||.+|||++|++|+||+...++|++
T Consensus 191 L~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN 270 (875)
T PRK14015 191 LFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMEN 270 (875)
T ss_pred eEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCccccc
Confidence 999999999998753 1 3678999999999999999999999999999999999999999999999755567888
Q ss_pred cCceeeeec-cccccCcccc-hhhh-hhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHH
Q 001111 321 FGAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYR 397 (1154)
Q Consensus 321 ~gagLii~s-~~LL~~~~~~-d~~~-~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~ 397 (1154)
+ |+++|. ..+|.++... +..+ ....+|+||+|||||||+||++||+|+|||||||+|++.+|.....+....++.
T Consensus 271 ~--Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~ 348 (875)
T PRK14015 271 K--GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIE 348 (875)
T ss_pred c--cccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8 578884 4577666532 2222 234689999999999999999999999999999999998887776543322221
Q ss_pred HHHHhhhhhhcccCCCccccCCCccccCCC---CccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCC
Q 001111 398 RYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASP 474 (1154)
Q Consensus 398 ~~~~~~~~~~~d~~~~~~L~s~~s~~~l~~---~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~ 474 (1154)
....... .....++.+..+++.+ .++...|+.++|.||++|||||+..||++.|+++|+.|+.++++++
T Consensus 349 ~~~~l~~-------~~~~~D~~~~a~pi~p~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~- 420 (875)
T PRK14015 349 DVRVLRA-------AQFAEDAGPMAHPVRPDSYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQA- 420 (875)
T ss_pred HHHHHhh-------hcccccccccCCCCCCcchhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC-
Confidence 1111100 0111111122223322 2344678899999999999999999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHhcCCCCccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCC
Q 001111 475 VRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSEN 554 (1154)
Q Consensus 475 ~~tlst~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~ 554 (1154)
+++++|++.+++++ |.|+.+|+ +|++++|+|.++|+.+|+..++.++++++|.+.....
T Consensus 421 ---at~~Df~~ale~as---g~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~~~~-------------- 479 (875)
T PRK14015 421 ---VTCEDFVAAMEDAS---GRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPPTPG-------------- 479 (875)
T ss_pred ---CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCCCCC--------------
Confidence 79999999999887 56899986 9999999999999999987777888999987542110
Q ss_pred CCCCCCcceeEEEEEEecCCccccccccCCCCc-eEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCcccccccccCCC
Q 001111 555 RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSME 633 (1154)
Q Consensus 555 ~~~~~~~~gpmtvri~E~DGt~eh~v~~~~~~~-~~~~ei~~~sK~~~rR~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~ 633 (1154)
......|..|++|.+.+.+|.--- +...++. ...+++... +. . +.-.+ -.+
T Consensus 480 ~~~~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~l~l~~~--------------------~q--~-f~f~~---~~~ 531 (875)
T PRK14015 480 QPEKQPLHIPVAIGLLDPDGKELP--LQLEGEPVERVLELTEA--------------------EQ--T-FTFEN---VAE 531 (875)
T ss_pred CCCCceEEEEEEEEEEcCCCceee--ccccCCccceEEEEcCC--------------------ee--E-EEEcC---CCC
Confidence 012346999999998887775210 0011110 111222100 00 0 10000 012
Q ss_pred CCceEEEEcCCCcEEEEEecCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001111 634 SPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1154)
Q Consensus 634 ~p~~WIRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1154)
.|+ +.+|++|.-..+++.++++..+..|+++|.|..+|.||++.|..
T Consensus 532 ~p~--~s~~r~fsapv~~~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~ 578 (875)
T PRK14015 532 RPV--PSLLRGFSAPVKLEYDYSDEDLLFLMAHDSDPFNRWEAGQRLAT 578 (875)
T ss_pred Cce--EEecCCCCCcEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 344 79999999999999999999999999999999999999999875
No 3
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=1.9e-66 Score=650.56 Aligned_cols=542 Identities=16% Similarity=0.196 Sum_probs=408.1
Q ss_pred CCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC-CccEEEEEcCCceeEEEEEcCeeee---eEecCCCCccchhhhhhc
Q 001111 16 NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTE---FEYYPHNHQNVENEKRWR 91 (1154)
Q Consensus 16 ~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~~~~I~L~a~~L~I~~V~Vng~~~~---f~~~~~~~~~~~~~~~~~ 91 (1154)
.++|.+.||+|+|+++++...+.|.++|++.+. +.+.|.||+++|+|.+|.+||+.+. |.+.+
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~~~~~~~~~~~~------------- 70 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGKPLAAGDYQLDD------------- 70 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCEecCcceEEEcC-------------
Confidence 458999999999999999999999999998753 4568999999999999999997643 33221
Q ss_pred ccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccccceeEEEEEEEecccccce
Q 001111 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIH 171 (1154)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~G~~ 171 (1154)
..|+|.. .| +.++++ +.|.+.+..+ .+..|++
T Consensus 71 --------------------------~~L~I~~-~~--------~~~~l~--i~~~~~p~~n-----------~~l~GlY 102 (863)
T TIGR02414 71 --------------------------ETLTIAS-VP--------ESFTLE--IETEIHPEEN-----------TSLEGLY 102 (863)
T ss_pred --------------------------CEEEEee-CC--------ccEEEE--EEEEeecccC-----------CCCeEEE
Confidence 1355531 01 112333 3333322211 1123444
Q ss_pred eccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCC-c-EEEecCceeeeeeecCCCCcEEEEEEeccccchhhhh
Q 001111 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (1154)
Q Consensus 172 F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~-~-~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~saylia 249 (1154)
+.+.+++|||||++||+||||+|+|+.||+|+++|++|++ | +++|||.++++.. .++++++++|+.++|||+|++|
T Consensus 103 ~s~~~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~--~~~g~~~~~f~~t~pmptYLfA 180 (863)
T TIGR02414 103 KSGGNFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGE--LPDGRHWAEWEDPFPKPSYLFA 180 (863)
T ss_pred EeCCeEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCcccccee--cCCCeEEEEEeCCCCcChhHhe
Confidence 4445789999999999999999999999999999999996 6 6789999876543 3567899999999999999999
Q ss_pred hhccCeEEEecCC------CCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCc
Q 001111 250 LAVAPFEVLPDHH------QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (1154)
Q Consensus 250 faVG~F~~~~~~~------~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~ga 323 (1154)
|+||+|+.+++.. ..++++|+.|+..+.+.++++.++++|+|||++||.+|||++|++|+||+...++|+++
T Consensus 181 ~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~-- 258 (863)
T TIGR02414 181 LVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENK-- 258 (863)
T ss_pred EEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCcccccc--
Confidence 9999999987532 35689999999999999999999999999999999999999999999997656788888
Q ss_pred eeeee-ccccccCccc-chhhh-hhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHH
Q 001111 324 AMGIF-SSQILYDEKV-IDQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (1154)
Q Consensus 324 gLii~-s~~LL~~~~~-~d~~~-~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~ 400 (1154)
||++| +..+|.++.. .+..+ ....+|+||+|||||||+|||+||+++|||||||+|++.++.....|....++....
T Consensus 259 GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~ 338 (863)
T TIGR02414 259 GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVR 338 (863)
T ss_pred ceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 67888 4557777654 22222 234589999999999999999999999999999999999887776654332222111
Q ss_pred HhhhhhhcccCCCccccCCCccccCCC---CccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCC
Q 001111 401 ANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRT 477 (1154)
Q Consensus 401 ~~~~~~~~d~~~~~~L~s~~s~~~l~~---~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~t 477 (1154)
..... ....++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 339 ~lr~~-------~f~~D~~p~~~Pi~~~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~---- 407 (863)
T TIGR02414 339 LLRAH-------QFPEDAGPMAHPVRPESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQA---- 407 (863)
T ss_pred HHHhh-------hhcccccccCCCCCCcchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC----
Confidence 11110 111122222233321 2345678899999999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHhcCCCCccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCC
Q 001111 478 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 557 (1154)
Q Consensus 478 lst~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1154)
+++++|.+.+++++ |.|+.+|+ +|++|+|+|.++|+.+|+.++..++++++|.+...+ ....
T Consensus 408 at~~Df~~ale~as---g~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~~~--------------~~~~ 469 (863)
T TIGR02414 408 VTCEDFVAAMEDAS---GRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPPTP--------------GQTE 469 (863)
T ss_pred CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCCCC--------------CCCc
Confidence 79999999999887 46899985 899999999999999998877778899888653211 0112
Q ss_pred CCCcceeEEEEEEecCCc-cccccccCCCCc--eEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCcccccccccCCCC
Q 001111 558 DIGWPGMMSIRVHELDGM-YDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMES 634 (1154)
Q Consensus 558 ~~~~~gpmtvri~E~DGt-~eh~v~~~~~~~--~~~~ei~~~sK~~~rR~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~ 634 (1154)
...|..|++|.+...+|. ... ...++. -..+++.. + + .. +.-.+ -.+.
T Consensus 470 ~~~~~iPl~i~l~~~~G~~~~~---~~~~~~~~~~~l~l~~----------~----------~--~~-f~f~~---~~~~ 520 (863)
T TIGR02414 470 KKPLHIPIAVGLLGPNGRKLML---SLDGERDTTRVLELTE----------A----------E--QT-FVFEG---IAEK 520 (863)
T ss_pred CCceEEEEEEEEEeCCCCEeee---cccCCCCcceEEEEcc----------C----------E--EE-EEEcC---CCCC
Confidence 346999999999988885 211 011110 11122210 0 0 00 10000 0123
Q ss_pred CceEEEEcCCCcEEEEEecCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001111 635 PLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1154)
Q Consensus 635 p~~WIRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1154)
|+ +.++++|.-..+++.++++..+..|+++|.|..+|.||.+.|..
T Consensus 521 p~--~sl~r~fsapv~l~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~ 566 (863)
T TIGR02414 521 PV--PSLLRGFSAPVNLEYPYSDEDLLLLLAHDSDPFNRWEAGQRLAR 566 (863)
T ss_pred Ce--eeecCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 44 89999999999999999999999999999999999999999875
No 4
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-65 Score=650.40 Aligned_cols=586 Identities=18% Similarity=0.244 Sum_probs=425.7
Q ss_pred CCCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEe-CCccEEEEEcCCceeEEEEEcCeeee-eEecCCCCccchhhhhh
Q 001111 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE-FEYYPHNHQNVENEKRW 90 (1154)
Q Consensus 13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~L~I~~V~Vng~~~~-f~~~~~~~~~~~~~~~~ 90 (1154)
++....++|.||+|.|.+++....|.|.+.|.+.+ .+++.|.||++++.|.++.+...... ...... ..
T Consensus 29 ~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~--------~~- 99 (882)
T KOG1046|consen 29 YRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEV--------SV- 99 (882)
T ss_pred ccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccc--------cc-
Confidence 46678999999999999999999999999999998 46889999999999999988432111 000000 00
Q ss_pred cccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccccc-eeEEEEEEEeccccc
Q 001111 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNV-KLVRIDYWVEKVEVG 169 (1154)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~v~i~y~~~~p~~G 169 (1154)
........+.+.++. .+..+. .+++ .+.|.|..+... |+|+..|...+ +|
T Consensus 100 ---------------------~~~~~~~~l~~~~~~---~l~~~~-~y~L--~i~f~g~l~~~~~G~y~s~y~~~~--~~ 150 (882)
T KOG1046|consen 100 ---------------------EEKEQEETLVFPLNE---TLLAGS-SYTL--TIEFTGKLNDSSEGFYRSSYTDSE--GS 150 (882)
T ss_pred ---------------------cccccceEEEEEccc---ccccCC-eEEE--EEEEeEeecCCcceeeeecccCCC--Cc
Confidence 000000124443321 122221 1333 467888887664 89999986433 33
Q ss_pred ceeccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeeeecCCCCcEEEEEEeccccchhhhh
Q 001111 170 IHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (1154)
Q Consensus 170 ~~F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~saylia 249 (1154)
. ..++.||+||++||..|||||+|+.||||.|+|.+|++++++|||+.+++.. .++++++.+|+.|+|||+|++|
T Consensus 151 ~---~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl~hp~~~~aLSNm~v~~~~~--~~~~~~~~~F~~Tp~MstYLvA 225 (882)
T KOG1046|consen 151 E---KSIAATQFEPTDARRAFPCFDEPAFKATFTITLVHPKGYTALSNMPVIKEEP--VDDGWKTTTFEKTPKMSTYLVA 225 (882)
T ss_pred e---EEEEEeccCccchhhcCCCCCcccccCceEEEEEecCCceEeecCccccccc--ccCCeeEEEEEecCCCchhhhe
Confidence 1 5688999999999999999999999999999999999999999999987764 3445999999999999999999
Q ss_pred hhccCeEEEecCCC--CceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCceeee
Q 001111 250 LAVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGI 327 (1154)
Q Consensus 250 faVG~F~~~~~~~~--~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii 327 (1154)
|+||+|+..+.... .++++|+.|+...+..++++.+.++++||+++||++||++|+|+|+||+.-.++|++| ||++
T Consensus 226 f~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENw--GLvt 303 (882)
T KOG1046|consen 226 FAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENW--GLVT 303 (882)
T ss_pred eeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcC--ccee
Confidence 99999999877654 7899999999999999999999999999999999999999999999998778889999 7899
Q ss_pred e-ccccccCcccchh--hhhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHHHhhh
Q 001111 328 F-SSQILYDEKVIDQ--AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCA 404 (1154)
Q Consensus 328 ~-s~~LL~~~~~~d~--~~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~~~~~ 404 (1154)
| +..+|+++..... ......+||||+|||||||+||++||+|+|||||||+|++++.++..++.....-. .....
T Consensus 304 yre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~--~~~~~ 381 (882)
T KOG1046|consen 304 YRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQ--FLLEN 381 (882)
T ss_pred eeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHH--HHHHH
Confidence 9 6789999865433 33455699999999999999999999999999999999999999988776543211 11111
Q ss_pred hhhcccCCCccccCCCccccC-----CCCccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCCCC
Q 001111 405 VCKADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLS 479 (1154)
Q Consensus 405 ~~~~d~~~~~~L~s~~s~~~l-----~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~tls 479 (1154)
++ .++..|+..+.+++ .+.++.+.|++++|.||++|||||+..+|++.|++||+.||.+++++| ++
T Consensus 382 l~-----~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~n----a~ 452 (882)
T KOG1046|consen 382 LE-----RVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSN----AK 452 (882)
T ss_pred HH-----HHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCC----CC
Confidence 11 12222222223333 233445689999999999999999999999999999999999999997 56
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCCCC
Q 001111 480 TKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDI 559 (1154)
Q Consensus 480 t~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1154)
++|+++.++.. .+.+++.||+.|+.|+|+|+++|..+++ .+.++|.++..... ..+...
T Consensus 453 ~~DLw~~l~~~---~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~----~~~l~Q~rf~~~~~--------------~~~~~~ 511 (882)
T KOG1046|consen 453 TEDLWDALEEG---SGLDVSELMDTWTKQMGYPVVTVERNGD----SLTLTQERFLSDPD--------------PSEDNY 511 (882)
T ss_pred chhHHHHHhcc---CCCCHHHHHhhhhcCCCCceEEEEecCC----EEEEehhhhccCCC--------------ccccCc
Confidence 67766666522 3579999999999999999999998765 66676665532211 012345
Q ss_pred CcceeEEEEEEecCCccccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCcccccccccCCCCCceEE
Q 001111 560 GWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWI 639 (1154)
Q Consensus 560 ~~~gpmtvri~E~DGt~eh~v~~~~~~~~~~~ei~~~sK~~~rR~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~~WI 639 (1154)
.|..|+++...... .+ .++.+..++ .. + . ...+.+||
T Consensus 512 ~w~iPl~~~~~~~~-~~------------~~~~~~~~~-------------~~----------~-~------l~~~~~wi 548 (882)
T KOG1046|consen 512 LWWIPLTYTTSGSG-SV------------PKFWLSSKS-------------TT----------I-K------LPESDQWI 548 (882)
T ss_pred ccceeEEEEcCCCC-cc------------ceeeecCCC-------------cc----------e-e------cCCCCeEE
Confidence 79999988654211 01 001110000 00 0 0 01223899
Q ss_pred EEcCCCcEEEEEecCC-CHHHHHHHHhhCC---CcHHHHHH---HHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHH
Q 001111 640 RADPEMEYLAEIHFNQ-PVQMWINQLEKDG---DVVAQAQA---IAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAA 712 (1154)
Q Consensus 640 RiDpd~ewl~~v~~~q-p~~m~~~QL~~dr---DV~aQ~eA---i~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa 712 (1154)
.++++..=..+|..+. .....+.||.. + .++-|..= +-+|......+....-.|..-+.++ ..|.+...|+
T Consensus 549 ~~N~~~~g~yRV~Yd~~~w~~l~~~l~~-~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e-~~~~p~~~~~ 626 (882)
T KOG1046|consen 549 KVNLEQTGYYRVNYDDENWALLIEQLKN-HESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNE-TDYVPWSAAI 626 (882)
T ss_pred EEeCCcceEEEEEeCHHHHHHHHHHHhh-cCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcc-cccchHHHHH
Confidence 9999999999999986 55566667654 2 22222211 1223332223333334466667665 4777777777
Q ss_pred HHHHcccc
Q 001111 713 YALANTAS 720 (1154)
Q Consensus 713 ~aLa~~a~ 720 (1154)
.+|..+..
T Consensus 627 ~~l~~~~~ 634 (882)
T KOG1046|consen 627 RSLYKLHS 634 (882)
T ss_pred HHHHHHhh
Confidence 77776654
No 5
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.5e-64 Score=641.42 Aligned_cols=431 Identities=15% Similarity=0.179 Sum_probs=330.8
Q ss_pred CCeEEEEEEEEEEEECCCc--EEEEEEEEEEEe-CCccEEEEEcCCceeEEEEEcCe-eeeeEecCCCCccchhhhhhcc
Q 001111 17 SGAVVRHQKLCLSIDMEKH--QIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE-PTEFEYYPHNHQNVENEKRWRS 92 (1154)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~--~~~G~v~I~i~~-~~~~~I~L~a~~L~I~~V~Vng~-~~~f~~~~~~~~~~~~~~~~~~ 92 (1154)
..+++.||+|.|+++.+.. ++.|+++|++.+ .+++.|.||+.+++|++|++||. ++.+.+.+
T Consensus 12 ~~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~~~~~~~~~~-------------- 77 (831)
T TIGR02412 12 SLITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGILDVAPVYDG-------------- 77 (831)
T ss_pred HhccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCcccCccccCC--------------
Confidence 4688999999999987655 458888888876 46789999999999999999996 33322221
Q ss_pred cccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccc-cceeEEEEEEEecccccce
Q 001111 93 MVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEKVEVGIH 171 (1154)
Q Consensus 93 ~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~v~i~y~~~~p~~G~~ 171 (1154)
..|.++. +..| ..+++ +.|.+.... ..|+++ | . .|.+|
T Consensus 78 ---------------------------~~i~l~~----l~~g--~~~l~--i~~~~~~~~~~~Gl~~--~-~-~~~~g-- 116 (831)
T TIGR02412 78 ---------------------------SRIPLPG----LLTG--ENTLR--VEATRAYTNTGEGLHR--F-V-DPVDG-- 116 (831)
T ss_pred ---------------------------CEEEccC----CCCC--ceEEE--EEEEEEecCCCceEEE--E-E-eCCCC--
Confidence 1122211 1112 12222 233332221 235554 2 2 24566
Q ss_pred eccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeeeecCCCCcEEEEEEeccccchhhhhhh
Q 001111 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLA 251 (1154)
Q Consensus 172 F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~sayliafa 251 (1154)
..+++|||||.+||+||||||+|+.||+|+++|++|++|+|+|||++.+.. ..+++++++|+.++|||+|++||+
T Consensus 117 --~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~---~~~~~~~~~F~~t~pmstYL~a~~ 191 (831)
T TIGR02412 117 --EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVT---PEPADRRWEFPETPKLSTYLTAVA 191 (831)
T ss_pred --eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEECCCcccccc---ccCCCeEEEecCCCCcccceEEEE
Confidence 468899999999999999999999999999999999999999999987653 244678999999999999999999
Q ss_pred ccCeEEEecC-CCCceEEEeCCCchhh--HHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCceeeee
Q 001111 252 VAPFEVLPDH-HQSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (1154)
Q Consensus 252 VG~F~~~~~~-~~~~v~~y~~P~~~~~--~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~ 328 (1154)
||+|+.++.. .+.++++||+|+..+. .+++++.++++++|||++||+||||+||++|++|+...++|+++ |++++
T Consensus 192 vG~f~~~~~~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~--Glit~ 269 (831)
T TIGR02412 192 AGPYHSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENA--GCVTF 269 (831)
T ss_pred EeceEEEeecCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCccccc--ceeee
Confidence 9999998754 3578999999997664 56889999999999999999999999999999997555688887 67889
Q ss_pred ccccccCcccchhh-hhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHHHhhhhhh
Q 001111 329 SSQILYDEKVIDQA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCK 407 (1154)
Q Consensus 329 s~~LL~~~~~~d~~-~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~~~~~~~~ 407 (1154)
.+.+|+.+...+.. .....+|+||+|||||||+||++||+|+|||||||+||+++++++..|.... +.......
T Consensus 270 ~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~-~~~f~~~~---- 344 (831)
T TIGR02412 270 AENFLHRAEATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDA-WTTFAAQG---- 344 (831)
T ss_pred chhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchH-HHHHHHHH----
Confidence 76677665443222 2233589999999999999999999999999999999999999988765332 11111000
Q ss_pred cccCCCccccCCCccccC----C-CCccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCCCCHHH
Q 001111 408 ADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKE 482 (1154)
Q Consensus 408 ~d~~~~~~L~s~~s~~~l----~-~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~tlst~~ 482 (1154)
...++..++.++.+++ . ..++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++|
T Consensus 345 --~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~n----at~~D 418 (831)
T TIGR02412 345 --KQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGN----ATLDD 418 (831)
T ss_pred --HHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCC----CCHHH
Confidence 0011111111222222 1 12344578999999999999999999999999999999999999997 69999
Q ss_pred HHHHHHHhcCCCCccHHHHHHHhhcCCCCceEEEEEEEecc
Q 001111 483 FRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKR 523 (1154)
Q Consensus 483 F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k 523 (1154)
|.+.+++++ |.++++||++|++++|+|.++|+..++.+
T Consensus 419 l~~~l~~~s---g~dl~~~~~~W~~~~G~P~l~v~~~~~~~ 456 (831)
T TIGR02412 419 LIDSLAKAS---GRDLSAWSDAWLETAGVNTLTPEITTDGG 456 (831)
T ss_pred HHHHHHHHh---CCCHHHHHHHHHcCCCCceEEEEEEECCC
Confidence 999999887 57899999999999999999999887653
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=6.7e-62 Score=595.01 Aligned_cols=437 Identities=19% Similarity=0.275 Sum_probs=329.9
Q ss_pred CCCC-CCeEEEEEEEEEEEECCCcEEEEEEEEEEEe-C-CccEEEEEcCCceeEEEEEcCeeeeeEecCCCCccchhhhh
Q 001111 13 KVEN-SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-P-DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKR 89 (1154)
Q Consensus 13 ~~~~-~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~-~~~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~ 89 (1154)
+.+| ..++|.||+|+|++|+++++|.|+|+|++.+ . .++.|.||+++|+|++|.++|.++.|+..+. +.
T Consensus 4 s~sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~-~~------- 75 (601)
T TIGR02411 4 SLSNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGLPADFAIGER-KE------- 75 (601)
T ss_pred cccCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCcccceEeccc-cC-------
Confidence 3444 3699999999999999999999999999987 3 4678999999999999999999887765432 00
Q ss_pred hcccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccccceeEEEEEEEec-ccc
Q 001111 90 WRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK-VEV 168 (1154)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~-p~~ 168 (1154)
-....|.|.++.+ +..+. .+ .+.+.|+|.++. .|+ +|+.. ..+
T Consensus 76 -------------------------~~g~~L~I~l~~~---l~~g~-~~--~l~I~Y~~~~~~-~gl----~~~~~~~t~ 119 (601)
T TIGR02411 76 -------------------------PLGSPLTISLPIA---TSKNK-EL--VLNISFSTTPKC-TAL----QWLTPEQTS 119 (601)
T ss_pred -------------------------CCCCeEEEEeCCc---cCCCc-eE--EEEEEEeecCCC-cee----EEecccccC
Confidence 0123588876432 22221 23 345677776543 232 23321 112
Q ss_pred cceeccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeeeecCCCCcEEEEEEeccccchhhh
Q 001111 169 GIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWI 248 (1154)
Q Consensus 169 G~~F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~sayli 248 (1154)
|- ..++++|||||.+||+||||+|+|+.|+||+++|++| ++|++||..+.+. .++..+++|.+++|||+|++
T Consensus 120 g~--~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~----~~~~~~~~F~~t~pmptYLi 191 (601)
T TIGR02411 120 GK--KHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGET----SNDPGKYLFKQKVPIPAYLI 191 (601)
T ss_pred CC--CCCEEEECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCccccc----cCCCceEEEEeCCCcchhhh
Confidence 31 2578999999999999999999999999999999999 9999999876543 23456889999999999999
Q ss_pred hhhccCeEEEecCCCCceEEEeCCCchhhHHHHHH-HHHHHHHHHHHhcCCCCCCCCccEEEeCC-CccccccccCceee
Q 001111 249 TLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLAP-EMAVSSSTFGAAMG 326 (1154)
Q Consensus 249 afaVG~F~~~~~~~~~~v~~y~~P~~~~~~~~t~~-~~~~al~ffee~fG~~YPf~ky~~VfVp~-~~~~~~~~~gagLi 326 (1154)
||+||+|+..+. +..+++|+.|+..+.+.+.+. .+.++++++|+++| ||||+|||+|++|+ ...++|+++| ++
T Consensus 192 a~avG~~~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~--lt 266 (601)
T TIGR02411 192 ALASGDLASAPI--GPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN--LT 266 (601)
T ss_pred eeeeccceeccc--CCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCccccccccccc--ce
Confidence 999999998653 567899999998888888887 89999999998765 99999999998854 3346788874 55
Q ss_pred eeccccccCcccchhhhhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHH---Hhh
Q 001111 327 IFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK---ANC 403 (1154)
Q Consensus 327 i~s~~LL~~~~~~d~~~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~---~~~ 403 (1154)
+.+..++.+.. ....+||||||||||||+||++||+|+|||||||+|++.+++++.+|+..+.+.... ...
T Consensus 267 f~~~~ll~~d~------s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~ 340 (601)
T TIGR02411 267 FATPTLIAGDR------SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQ 340 (601)
T ss_pred eeccccccCCh------hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHH
Confidence 55667765432 123589999999999999999999999999999999999999999998865443211 111
Q ss_pred hhhhcccCCCccccCCCccccCCCCccccccccceeccHHHHHHHHHHHhc-hHHHHHHHHHHHHHhcCCCCCCCCCHHH
Q 001111 404 AVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKE 482 (1154)
Q Consensus 404 ~~~~~d~~~~~~L~s~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG-~e~F~~~L~~yl~~~~~~~~~~tlst~~ 482 (1154)
..+.. .....++... ..+....++...|+.+.|.||+++|||||..|| ++.|+++|+.|++++++++ +++++
T Consensus 341 ~~~~~-~~~~~~~~~~--~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s----~~t~d 413 (601)
T TIGR02411 341 ESVKT-LGEDPEYTKL--VVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKS----LDTYQ 413 (601)
T ss_pred HHHHh-hcCCCCCCcc--cccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCC----CCHHH
Confidence 11110 0000111110 111222245678999999999999999999999 9999999999999999996 79999
Q ss_pred HHHHHHHhcCC--CCccHHHH-HHHhhcCCCCceEEEEEE
Q 001111 483 FRHFANKVGNL--ERPFLKEF-FPRWVGTCGCPVLRMGFS 519 (1154)
Q Consensus 483 F~~l~e~vs~~--~g~dL~~F-f~qWv~~~G~P~l~V~~~ 519 (1154)
|.+.+++.... .+.+++.+ |++|++++|+|.+++.+.
T Consensus 414 f~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 414 FKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 99877654311 12467766 999999999999876653
No 7
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-59 Score=588.82 Aligned_cols=528 Identities=20% Similarity=0.274 Sum_probs=390.9
Q ss_pred EEEEEEEEEECCCcEEEEEEEEEEEe--C-CccEEEEEcCCceeEEEEEcCeeeee--EecCCCCccchhhhhhcccccC
Q 001111 22 RHQKLCLSIDMEKHQIYGYTELEIAV--P-DIGIVGLHAENLGIESVLVDGEPTEF--EYYPHNHQNVENEKRWRSMVSS 96 (1154)
Q Consensus 22 ~hy~l~L~id~~~~~~~G~v~I~i~~--~-~~~~I~L~a~~L~I~~V~Vng~~~~f--~~~~~~~~~~~~~~~~~~~v~~ 96 (1154)
.|..+++++++++..|.|.+++++.. . ....|.||+++|+|.+|.+||.+... .+.+.
T Consensus 25 ~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~~~~~~~~~~----------------- 87 (859)
T COG0308 25 YDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKALTAWYRLDGD----------------- 87 (859)
T ss_pred cceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccccccccccCc-----------------
Confidence 44444444555569999999999975 3 33349999999999999999986543 22211
Q ss_pred CChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccc--cceeEEEEEEEecccccceecc
Q 001111 97 PSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ--NVKLVRIDYWVEKVEVGIHFDG 174 (1154)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~--~~~~v~i~y~~~~p~~G~~F~~ 174 (1154)
.+.|....+ .+..+....++.+.+.+.+.... -.|+++.. . .+ .
T Consensus 88 ----------------------~~~i~~~~~--~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~----~--~~----~ 133 (859)
T COG0308 88 ----------------------ALTITVAPP--IPERSERPFTLAITYEFTGPVSNDTLEGLYRSG----Y--GG----K 133 (859)
T ss_pred ----------------------cceeeeccc--cccccCCCccEEEEEEecccccCccccceeecC----C--CC----C
Confidence 112211000 00000011123333344433221 12332211 1 11 4
Q ss_pred ceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeeeecCCCCcEEEEEEeccccchhhhhhhccC
Q 001111 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (1154)
Q Consensus 175 ~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~sayliafaVG~ 254 (1154)
.+++||||+.+||+||||+|+|+.|+||+++|++++++++||||+++.... ..+++++++|..++|||+|++|+++|+
T Consensus 134 ~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~~~~~--~~~g~~~~~f~~~~~mptYL~al~~G~ 211 (859)
T COG0308 134 PYLITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLIDGGT--LVDGRKIVKFEDTPPMPTYLFALVAGD 211 (859)
T ss_pred eeEEeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCCcccccc--ccCCcEEEEEcCCCCcchHhhheeeec
Confidence 689999999999999999999999999999999999999999999987653 335699999999999999999999999
Q ss_pred eEEEecCC-----CCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCceeeee-
Q 001111 255 FEVLPDHH-----QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF- 328 (1154)
Q Consensus 255 F~~~~~~~-----~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~- 328 (1154)
|+.+++.. ..++.+|+.|+....++++++.+.++++|||++||.+||+++ .+|+||+...++|+|+ |++++
T Consensus 212 ~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~--Gl~tf~ 288 (859)
T COG0308 212 LEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENW--GLVTFR 288 (859)
T ss_pred ceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCcccccc--ceeEEe
Confidence 99988765 578899999999999999999999999999999999999999 9999998777888888 56788
Q ss_pred ccccccCc-ccchhhhh-hHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHHHhhhhh
Q 001111 329 SSQILYDE-KVIDQAID-TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (1154)
Q Consensus 329 s~~LL~~~-~~~d~~~~-~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~~~~~~~ 406 (1154)
...+|.++ ...+..+. ...+++||+|||||||+||++||+|+|||||||+|++..+.+.+.|....++..+....
T Consensus 289 ~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~--- 365 (859)
T COG0308 289 EKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLR--- 365 (859)
T ss_pred eeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHh---
Confidence 45577775 44444443 33489999999999999999999999999999999999999999883333332222211
Q ss_pred hcccCCCccccCCCccccC----C-CCccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 001111 407 KADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (1154)
Q Consensus 407 ~~d~~~~~~L~s~~s~~~l----~-~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~tlst~ 481 (1154)
...++..++.+..+++ + +.++...||.++|.||+.|+|||+..+|++.|+++|+.|+++|.+++ .+++
T Consensus 366 ---~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~----~~~~ 438 (859)
T COG0308 366 ---TSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGN----ATTM 438 (859)
T ss_pred ---hhHHHhhccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCC----CCHH
Confidence 1112222333333333 2 36677899999999999999999999999999999999999999997 7999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCCCCCc
Q 001111 482 EFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (1154)
Q Consensus 482 ~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1154)
+|.+..+.++ |+|+.++|.+|+.++|+|++.|+..++. .+.|+|.|..... ......|
T Consensus 439 Dl~~a~~~~s---g~dl~~~~~~w~~q~G~P~l~v~~~~~~---~~~l~~~q~~~~~----------------~~~~~~~ 496 (859)
T COG0308 439 DLWKALEDAS---GKDLSAFFESWLSQAGYPVLTVSVRYDD---FFKLTQKQFTPPG----------------QEEKRPW 496 (859)
T ss_pred HHHHHHHHHh---CCcHHHHHHHHHhCCCCCceeeeeeccc---cEEEEEEEeccCC----------------CccCcee
Confidence 9999999988 5799999999999999999999998875 5668888875321 0124478
Q ss_pred ceeEEEEEEecCCccccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCcccccccccCCCCCceEEEE
Q 001111 562 PGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRA 641 (1154)
Q Consensus 562 ~gpmtvri~E~DGt~eh~v~~~~~~~~~~~ei~~~sK~~~rR~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~~WIRi 641 (1154)
+.|+.+...+.+|. + ++.+.++..+ +.+ .......++.+
T Consensus 497 ~iPl~~~~~~~~~~--~-~~~~~~~~~t-~~~-------------------------------------~~~~~~~~~~~ 535 (859)
T COG0308 497 PIPLAIKLLDGGGV--K-VLLLTEGEQT-VTF-------------------------------------ELVGIPPFPSL 535 (859)
T ss_pred eeccEEEecCCCCc--e-eeeeeccceE-EEE-------------------------------------ecccCCcccee
Confidence 99999988876651 1 1111111110 100 00112346677
Q ss_pred cCCCcEEEEEecCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001111 642 DPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1154)
Q Consensus 642 Dpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1154)
+..+.......+..++..|..++++++ +.+|+..+..
T Consensus 536 ~~~~~~~~~~~~~y~~~~l~~~~~~~~----~~~~~~~~~~ 572 (859)
T COG0308 536 KVNDSAPVFYRVDYSDQSLSKLLQHDP----RLEAAQRLAL 572 (859)
T ss_pred eccCCccceEEEecCHHHHHHHHhhhh----hhhHHHHHhh
Confidence 788888899999999999999999988 7777766654
No 8
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=2.3e-54 Score=508.90 Aligned_cols=372 Identities=23% Similarity=0.350 Sum_probs=279.0
Q ss_pred CCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEe-CCccEEEEEcCCceeEEEEEcCeeee-------eEecCCCCccchh
Q 001111 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE-------FEYYPHNHQNVEN 86 (1154)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~L~I~~V~Vng~~~~-------f~~~~~~~~~~~~ 86 (1154)
....+.|.||+|.|++|+++..|+|.|+|++.+ .+++.|.||+.+++|.+|.++|.... +.+..
T Consensus 2 Lp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~~~~~~~-------- 73 (390)
T PF01433_consen 2 LPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSSPFEYDD-------- 73 (390)
T ss_dssp --TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCEEEEEEC--------
T ss_pred CCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccccccccceeecc--------
Confidence 356899999999999999999999999999998 57899999999999999999987654 22221
Q ss_pred hhhhcccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccc-cceeEEEEEEEec
Q 001111 87 EKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEK 165 (1154)
Q Consensus 87 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~v~i~y~~~~ 165 (1154)
....|.|.++.+ +..+. .+++ .+.|+|.+.. ..|+++..|....
T Consensus 74 -----------------------------~~~~l~I~l~~~---l~~g~-~~~L--~I~y~g~~~~~~~G~~~~~y~~~~ 118 (390)
T PF01433_consen 74 -----------------------------ENEKLTITLPKP---LPPGS-NYTL--RIEYSGKISDDSSGLYRSSYTDQT 118 (390)
T ss_dssp -----------------------------CBTEEEEEEEEE---CSTTE-EEEE--EEEEEEECBSSSSEEEEEEEE-GT
T ss_pred -----------------------------ccceeehhhhhh---cccCc-EEEE--EEEEeecccccccccccceeeccc
Confidence 122477765432 22222 2344 4678887665 4588888886511
Q ss_pred ccccceeccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeeeecCCCCcEEEEEEeccccch
Q 001111 166 VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (1154)
Q Consensus 166 p~~G~~F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~sa 245 (1154)
+| ...++++|++||.+||+||||+|+|++||+|+++|++|++++|+|||++.++... ++++++++|..++|||+
T Consensus 119 --~~--~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~--~~~~~~~~f~~t~p~~~ 192 (390)
T PF01433_consen 119 --NG--NTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESN--DDGWKTTTFETTPPMPT 192 (390)
T ss_dssp --SS--SETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEE--TTTEEEEEEEEEEEEEG
T ss_pred --cc--ccCCceeecccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccc--cccceeEeeecccccCc
Confidence 22 1368899999999999999999999999999999999999999999999987653 36799999999999999
Q ss_pred hhhhhhccCeEEEecCCC--CceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCc
Q 001111 246 KWITLAVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (1154)
Q Consensus 246 yliafaVG~F~~~~~~~~--~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~ga 323 (1154)
|++||+||+|+.++.... .++++|++|+..+.++++++.+.++++||+++||.+|||+|+++|++|+...++|+++
T Consensus 193 yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~-- 270 (390)
T PF01433_consen 193 YLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENW-- 270 (390)
T ss_dssp GG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--T--
T ss_pred hhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeEEEEecccccccccc--
Confidence 999999999999876554 5899999999999999999999999999999999999999999999996444566766
Q ss_pred eeeee-ccccccCcccchh--hhhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHH-
Q 001111 324 AMGIF-SSQILYDEKVIDQ--AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY- 399 (1154)
Q Consensus 324 gLii~-s~~LL~~~~~~d~--~~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~- 399 (1154)
|++++ +..++++++.... ......+||||+|||||||+||++||+|+||+||||+|++.+++++.+|.........
T Consensus 271 g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~ 350 (390)
T PF01433_consen 271 GLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFLV 350 (390)
T ss_dssp TEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHH
T ss_pred ccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhccCcccchhhhhh
Confidence 56777 6678888665432 2334568999999999999999999999999999999999999999999544321111
Q ss_pred HHhhhhhhccc-CCCccccCCCccccC-CCCccccccccceeccH
Q 001111 400 KANCAVCKADD-SGATALSSSASCKDL-YGTQCIGIFGKIRSCKS 442 (1154)
Q Consensus 400 ~~~~~~~~~d~-~~~~~L~s~~s~~~l-~~~~~~~~f~~i~Y~Kg 442 (1154)
.........|. ....++. .++ .+.++...|+.+.|.||
T Consensus 351 ~~~~~~~~~d~~~~~~pl~-----~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 351 QEMQRALREDALPNSHPLS-----SEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHHHHHHHHTSTTCCCSS-----SSSSSESCGGGGSSHHHHHHH
T ss_pred hhHHHHHHHhhcCCCcceE-----eCCCCCCChHHhcCccccCCC
Confidence 11111122222 1111221 112 23455678999999998
No 9
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-47 Score=435.51 Aligned_cols=449 Identities=20% Similarity=0.285 Sum_probs=321.4
Q ss_pred CCCCCCCCCCCCC-CCC-CCeEEEEEEEEEEEECCCcEEEEEEEEEEEe-CCccEEEEEcCCceeEEEEEcCeeeeeEec
Q 001111 1 MAKPRKPKNEETK-VEN-SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYY 77 (1154)
Q Consensus 1 ~~~~~~~~~~~~~-~~~-~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~L~I~~V~Vng~~~~f~~~ 77 (1154)
||-+| ||. .+| ..+.+.|+.+.+.+||+.+.++|+|.+++++ .+...|.||.+++.|.+|++||.+.+|...
T Consensus 1 m~~~~-----Dp~s~sn~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~~~~i~ 75 (613)
T KOG1047|consen 1 MAPRR-----DPSSASNYRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEPPFRIG 75 (613)
T ss_pred CCCCC-----CcccccChhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCCCCccC
Confidence 66666 543 333 4688999999999999999999999999986 333359999999999999999998876543
Q ss_pred CCCCccchhhhhhcccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccccceeE
Q 001111 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLV 157 (1154)
Q Consensus 78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v 157 (1154)
.. + .+. +..-.+.+.. + ..+. ++..++ .+.|...+.....
T Consensus 76 ~~--~------~~~-----------------------g~~~~~~l~~--~--~~~a-~~~~~l--~i~y~Ts~~atal-- 115 (613)
T KOG1047|consen 76 FR--Q------PFL-----------------------GSGQKLVLPA--P--SSKA-GERLQL--LIWYETSPSATAL-- 115 (613)
T ss_pred cc--c------CCC-----------------------CCceEEEecc--c--cccc-cCceEE--EEEEeccCCccee--
Confidence 21 0 000 0011133311 1 1111 111222 2333322222110
Q ss_pred EEEEEEeccc-ccceeccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeeeecCCCCcEEEE
Q 001111 158 RIDYWVEKVE-VGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236 (1154)
Q Consensus 158 ~i~y~~~~p~-~G~~F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~~~~d~~~kt~~ 236 (1154)
-|++..+ .|- ..+|++||||...||..|||+|.|+.|.||+.+|.+|.++++++++...++. +...++.+++
T Consensus 116 ---qwL~peQT~gk--~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~~~~--~~~~~~~~f~ 188 (613)
T KOG1047|consen 116 ---QWLNPEQTSGK--KHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPAGEK--PGSNGRAIFR 188 (613)
T ss_pred ---EEeccccccCC--CCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCcceeeeeccccccC--CCCCCcceEE
Confidence 1221111 121 2489999999999999999999999999999999999999999999875544 2455688999
Q ss_pred EEeccccchhhhhhhccCeEEEecCCCCceEEEeCCCchhhHHHHHH-HHHHHHHHHHHhcCCCCCCCCccEEEeCCCc-
Q 001111 237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLAPEM- 314 (1154)
Q Consensus 237 F~~t~P~sayliafaVG~F~~~~~~~~~~v~~y~~P~~~~~~~~t~~-~~~~al~ffee~fG~~YPf~ky~~VfVp~~~- 314 (1154)
|.+..|+|+|+|||++|+.+..+. +..-++|+.|...+.....+. .+.++++--|+.+| ||+|+.||++++|+.+
T Consensus 189 f~q~~pIP~YLiai~~G~L~s~eI--gpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDllvlPpSFP 265 (613)
T KOG1047|consen 189 FKQEVPIPSYLIAIAVGDLESREI--GPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDLLVLPPSFP 265 (613)
T ss_pred EEeccCchhhhHHHhhcccccccc--CCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceEEEecCCCC
Confidence 999999999999999999876553 456889999999988888887 89999999999999 9999999999998632
Q ss_pred cccccccCceeeeeccccccCcccchhhhhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHH
Q 001111 315 AVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA 394 (1154)
Q Consensus 315 ~~~~~~~gagLii~s~~LL~~~~~~d~~~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~ 394 (1154)
.++|++. .|++....||-..+. ...+|||||||-||||+||..+|.+.||||||++|++...+..++|....
T Consensus 266 ~gGMENP--cltF~TpTllaGDrs------l~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g~~~g~~~~ 337 (613)
T KOG1047|consen 266 FGGMENP--CLTFVTPTLLAGDRS------LVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVGRLYGEAYR 337 (613)
T ss_pred cccccCc--ceeeecchhhcCCcc------hhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhhhhcchhHH
Confidence 2233332 244446666655432 24579999999999999999999999999999999999999999998876
Q ss_pred HHHHHHHhhhhhh-cccCCCccccCCCccccCCCCccccccccceeccHHHHHHHHHHHhc-hHHHHHHHHHHHHHhcCC
Q 001111 395 RYRRYKANCAVCK-ADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGA 472 (1154)
Q Consensus 395 r~~~~~~~~~~~~-~d~~~~~~L~s~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG-~e~F~~~L~~yl~~~~~~ 472 (1154)
.+.....+...-. .+.-+. .........++.+.++...|+.+-|.||..+|+.||+.+| ++.|...||.|+++++++
T Consensus 338 ~f~a~~gw~~L~~~~d~~g~-~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~Yv~kfa~k 416 (613)
T KOG1047|consen 338 QFEALIGWRELRPSMDLFGE-TSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYLEQLLGDPTRFDPFLRAYVHKFAFK 416 (613)
T ss_pred HHHHhcChhhhhhHHHhcCC-CcccchhhhhccCCChHHhhhcCchhhhhHHHHHHHHHhCChhhHHHHHHHHHHHhccc
Confidence 5543222221100 011111 0000111223344456678999999999999999999999 578899999999999998
Q ss_pred CCCCCCCHHHHHHHHHH-hcCCCCcc-HHH-HHHHhhcCCCCceEEEE
Q 001111 473 SPVRTLSTKEFRHFANK-VGNLERPF-LKE-FFPRWVGTCGCPVLRMG 517 (1154)
Q Consensus 473 ~~~~tlst~~F~~l~e~-vs~~~g~d-L~~-Ff~qWv~~~G~P~l~V~ 517 (1154)
+ +.+++|....-+ ..+...++ ++. -|+.|++++|.|...-.
T Consensus 417 s----I~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 417 S----ILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred e----ecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCC
Confidence 4 899999876543 33221222 333 49999999999975433
No 10
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=98.70 E-value=1e-08 Score=100.83 Aligned_cols=102 Identities=20% Similarity=0.318 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHHHhhhhhhcccCCCccccCCCccccC
Q 001111 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDL 425 (1154)
Q Consensus 346 ~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~~~~~~~~~d~~~~~~L~s~~s~~~l 425 (1154)
..+++||++|+|++..+........|++||+|+|++...- .+. ... ....+... ...++ .++
T Consensus 26 ~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~~------~~~-~~~---~~~~~~~~--~~~~~------~~l 87 (128)
T PF13485_consen 26 DRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRIE------DEF-DED---LKQAIESG--SLPPL------EPL 87 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCcc------chh-HHH---HHHHHHcC--CCCCh------HHH
Confidence 4689999999999999987788889999999999993310 010 111 11111111 11111 111
Q ss_pred CC-CccccccccceeccHHHHHHHHHHHhchHHHHHHHHHH
Q 001111 426 YG-TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNI 465 (1154)
Q Consensus 426 ~~-~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~y 465 (1154)
.. ......+....|.+|.+++++|+...|++.|.+.|+.|
T Consensus 88 ~~~~~~~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 88 NSSFDFSWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred hccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 10 00023344567999999999999999999999999875
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=98.57 E-value=3.5e-06 Score=98.58 Aligned_cols=226 Identities=14% Similarity=0.137 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCceeeee-ccccccCcccc-hhh-hhh-HHHHHHH
Q 001111 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVI-DQA-IDT-SIKLSFA 352 (1154)
Q Consensus 277 ~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~-s~~LL~~~~~~-d~~-~~~-~~~IaHE 352 (1154)
..+...+.++++++-=-+.|| +-||.+|.+++--. + ..++||.-. |+.+.++.... ++. +.. ..+++||
T Consensus 182 d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s-----~-q~~GGlEH~~St~l~~~r~~~~~~~ky~~~l~llsHE 254 (558)
T COG3975 182 DKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLS-----D-QIYGGLEHRRSTALIYDRFGFTDQDKYQDLLGLLSHE 254 (558)
T ss_pred cHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEec-----C-CCCCCceeccccccccccccccchhHHHHHHHHHHHH
Confidence 344455666666666667787 67999988775421 1 223377766 55666665333 222 232 5689999
Q ss_pred HHHhhcCCccccCCC-----------CcchhhhhHHHhHHHHHHHHH--hCChHHHHHHHHHhhhhhhcccCCCccccCC
Q 001111 353 LARQWFGVYITPELP-----------NDEWLLDGLAGFLTDSFIKKF--LGNNEARYRRYKANCAVCKADDSGATALSSS 419 (1154)
Q Consensus 353 LAHQWFGnlVt~~~W-----------~D~WLnEGfA~Yl~~l~~~~~--~G~ne~r~~~~~~~~~~~~~d~~~~~~L~s~ 419 (1154)
..|-|-+-.|.|..- .-+|+.|||+.|...++.-+. .-..+|.--.-+....+.........++..
T Consensus 255 yfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl~~~~~~~gRl~~~laE- 333 (558)
T COG3975 255 YFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTLARYLNTPGRLRQSLAE- 333 (558)
T ss_pred HHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCceecccccc-
Confidence 999999988877642 458999999999998875443 111222111111222221110000111111
Q ss_pred CccccC----CCCccccccccce--eccHHHHHHHHHHHh-----chHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 001111 420 ASCKDL----YGTQCIGIFGKIR--SCKSVAILQMLEKQM-----GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFAN 488 (1154)
Q Consensus 420 ~s~~~l----~~~~~~~~f~~i~--Y~Kg~lVL~MLe~~l-----G~e~F~~~L~~yl~~~~~~~~~~tlst~~F~~l~e 488 (1154)
++.+. +..+... -..+. |.||++|--+|+..| |+.++..+|+.+...+... ++..+.++++.+++
T Consensus 334 -sS~~awik~yr~d~ns-~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~--~~~~t~e~v~av~~ 409 (558)
T COG3975 334 -SSFDAWIKYYRPDENS-PNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRA--ERGYTPEDVQAVLE 409 (558)
T ss_pred -cccchhHHhhcccccc-cccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcC--ccCCCHHHHHHHHH
Confidence 11110 1000000 01122 899999999998887 5678999999999987763 44689999999999
Q ss_pred HhcCCCCccHHHHHHHhhcCCCCceEEEE
Q 001111 489 KVGNLERPFLKEFFPRWVGTCGCPVLRMG 517 (1154)
Q Consensus 489 ~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~ 517 (1154)
.+. |.|+..||++.+++.--|.|.--
T Consensus 410 ~~t---g~dl~~f~~~~i~~~~~~~l~~~ 435 (558)
T COG3975 410 NVT---GLDLATFFDEYIEGTEPPPLNPL 435 (558)
T ss_pred hhc---cccHHHHHHHHhhcCCCCChhhh
Confidence 987 46899999999999988877544
No 12
>PRK09687 putative lyase; Provisional
Probab=97.55 E-value=0.0062 Score=69.13 Aligned_cols=212 Identities=18% Similarity=0.096 Sum_probs=137.6
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCCCc---hhHHHHHHHH-hccCCchHHHHHHHHHHHHcccccccchhhHHHHH
Q 001111 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLS---FNVVNTLNNF-LSDSKAFWRVRIEAAYALANTASEETDWAGLLHLV 732 (1154)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s---~~~~~~L~~~-l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~ 732 (1154)
.+.-+.+|.++.|...|..|+.+|....... ..+...|... +.|+ =+.||..|+.+|+.+......| ...++
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~--d~~VR~~A~~aLG~~~~~~~~~--~~~a~ 130 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK--SACVRASAINATGHRCKKNPLY--SPKIV 130 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC--CHHHHHHHHHHHhccccccccc--chHHH
Confidence 5566777888999999999999999874321 2356667766 4443 4899999999999987665444 11222
Q ss_pred HHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHH
Q 001111 733 KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQS 812 (1154)
Q Consensus 733 ~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~a 812 (1154)
........+++ -.|+.+...||+.+++ +++...|+.+|+-+ |..-+...+.|
T Consensus 131 ~~l~~~~~D~~--------------~~VR~~a~~aLg~~~~------~~ai~~L~~~L~d~--------~~~VR~~A~~a 182 (280)
T PRK09687 131 EQSQITAFDKS--------------TNVRFAVAFALSVIND------EAAIPLLINLLKDP--------NGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhhCCC--------------HHHHHHHHHHHhccCC------HHHHHHHHHHhcCC--------CHHHHHHHHHH
Confidence 22222112221 2488999999987753 57899999999822 23488999999
Q ss_pred hhccccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHHH
Q 001111 813 VGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRV 892 (1154)
Q Consensus 813 L~~~~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~ 892 (1154)
||.+.... ..++..+...+ ...+..|-.+|+.+|.+++ ..--++.+.. +...+. +|.
T Consensus 183 Lg~~~~~~------~~~~~~L~~~L------~D~~~~VR~~A~~aLg~~~----~~~av~~Li~----~L~~~~---~~~ 239 (280)
T PRK09687 183 LNSNKYDN------PDIREAFVAML------QDKNEEIRIEAIIGLALRK----DKRVLSVLIK----ELKKGT---VGD 239 (280)
T ss_pred HhcCCCCC------HHHHHHHHHHh------cCCChHHHHHHHHHHHccC----ChhHHHHHHH----HHcCCc---hHH
Confidence 99874322 12344444444 3447788888888887652 1111233333 333332 799
Q ss_pred HHHHHhhccccccCCchHHHHHHHHHhccCccchhh
Q 001111 893 EASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQ 928 (1154)
Q Consensus 893 ~A~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 928 (1154)
.|.++|=.++- ..++..+...+..+|+.+.+
T Consensus 240 ~a~~ALg~ig~-----~~a~p~L~~l~~~~~d~~v~ 270 (280)
T PRK09687 240 LIIEAAGELGD-----KTLLPVLDTLLYKFDDNEII 270 (280)
T ss_pred HHHHHHHhcCC-----HhHHHHHHHHHhhCCChhHH
Confidence 99999988642 47788888888766665553
No 13
>PRK09687 putative lyase; Provisional
Probab=97.23 E-value=0.011 Score=67.12 Aligned_cols=176 Identities=17% Similarity=0.083 Sum_probs=118.2
Q ss_pred HHhhCCCcHHHHHHHHHHHhCCC----CchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhc
Q 001111 663 QLEKDGDVVAQAQAIAALEALPH----LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 738 (1154)
Q Consensus 663 QL~~drDV~aQ~eAi~~L~~~~~----~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~ 738 (1154)
-+.+|+|..-|..|+.+|+.... .+..+...|...+.|+ .++||..|+.+|+++.+++ .+..|+++.+.
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~~~----ai~~L~~~L~d- 170 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK--STNVRFAVAFALSVINDEA----AIPLLINLLKD- 170 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC--CHHHHHHHHHHHhccCCHH----HHHHHHHHhcC-
Confidence 34799999999999999998632 2334567788888886 7899999999999998764 47777776652
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhcccc
Q 001111 739 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (1154)
Q Consensus 739 ~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~ 818 (1154)
+ .+.|+.....||+.+ +...+++...|+.+|. |. |...+.+.+.+||.+.-
T Consensus 171 ---~--------------~~~VR~~A~~aLg~~----~~~~~~~~~~L~~~L~--D~------~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 171 ---P--------------NGDVRNWAAFALNSN----KYDNPDIREAFVAMLQ--DK------NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ---C--------------CHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhc--CC------ChHHHHHHHHHHHccCC
Confidence 1 235999999999988 3335578899999993 22 45578999999998643
Q ss_pred ccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHh
Q 001111 819 GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRAL 898 (1154)
Q Consensus 819 ~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l 898 (1154)
..++.-|.++++-+. +.+.+..+|.+++-. --+..+..+...+. -..||.+|.++|
T Consensus 222 --------~~av~~Li~~L~~~~--------~~~~a~~ALg~ig~~----~a~p~L~~l~~~~~----d~~v~~~a~~a~ 277 (280)
T PRK09687 222 --------KRVLSVLIKELKKGT--------VGDLIIEAAGELGDK----TLLPVLDTLLYKFD----DNEIITKAIDKL 277 (280)
T ss_pred --------hhHHHHHHHHHcCCc--------hHHHHHHHHHhcCCH----hHHHHHHHHHhhCC----ChhHHHHHHHHH
Confidence 123444444444322 346666776665311 11222333332222 357899998876
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.88 E-value=0.76 Score=60.78 Aligned_cols=252 Identities=17% Similarity=0.108 Sum_probs=135.7
Q ss_pred CCCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHH
Q 001111 654 NQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVK 733 (1154)
Q Consensus 654 ~qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~ 733 (1154)
..|.-.++.++-.|.|..-|..|+..|.+... ..+...|.+.|.|+ ...||..||.+|+++...... ...|+.
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--~~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~~~~---~~~L~~ 691 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP--PGFGPALVAALGDG--AAAVRRAAAEGLRELVEVLPP---APALRD 691 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc--hhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccCc---hHHHHH
Confidence 55654455555679999999999999998743 34678899999775 888999999999988532111 234554
Q ss_pred HHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHh
Q 001111 734 FYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSV 813 (1154)
Q Consensus 734 ~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL 813 (1154)
+++. .+..|+.+...+|+.++..+ + ..|+..|+ =.|..-+.+.+.+|
T Consensus 692 ~L~~------------------~d~~VR~~A~~aL~~~~~~~---~----~~l~~~L~--------D~d~~VR~~Av~aL 738 (897)
T PRK13800 692 HLGS------------------PDPVVRAAALDVLRALRAGD---A----ALFAAALG--------DPDHRVRIEAVRAL 738 (897)
T ss_pred HhcC------------------CCHHHHHHHHHHHHhhccCC---H----HHHHHHhc--------CCCHHHHHHHHHHH
Confidence 4432 12357777777777665221 1 23444443 12334566666666
Q ss_pred hcccc--------ccccHHHHHH--------------HHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCc-
Q 001111 814 GELEF--------GQQSILFLSS--------------LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS- 870 (1154)
Q Consensus 814 ~~~~~--------~~~~~~~~~~--------------~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~- 870 (1154)
+.+.- ..++...-.. .+..+.++++ +-.-.|-.+++.+|.++ |.-+
T Consensus 739 ~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~------D~d~~VR~aA~~aLg~~-----g~~~~ 807 (897)
T PRK13800 739 VSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG------DPDPLVRAAALAALAEL-----GCPPD 807 (897)
T ss_pred hcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc------CCCHHHHHHHHHHHHhc-----CCcch
Confidence 64311 0011000000 1122222222 22356777777777664 2211
Q ss_pred h-hhhhhhhccccCCCCcHHHHHHHHHHhhccccccCCchHHHHHHHHHhccCccchhhhhHHHHHhhhhhhccCCCCCC
Q 001111 871 L-DQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNH 949 (1154)
Q Consensus 871 ~-~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 949 (1154)
. ..+... .. +..+.||.+|.++|-.++. ..++..++..+ .||+... +..+++.+.--
T Consensus 808 ~~~~l~~a---L~--d~d~~VR~~Aa~aL~~l~~-----~~a~~~L~~~L-~D~~~~V----R~~A~~aL~~~------- 865 (897)
T PRK13800 808 DVAAATAA---LR--ASAWQVRQGAARALAGAAA-----DVAVPALVEAL-TDPHLDV----RKAAVLALTRW------- 865 (897)
T ss_pred hHHHHHHH---hc--CCChHHHHHHHHHHHhccc-----cchHHHHHHHh-cCCCHHH----HHHHHHHHhcc-------
Confidence 1 122222 12 2247899999999977532 35667777666 3444333 22222222110
Q ss_pred CCChHHHHHHHHHHhccccccchhhHhhHHHHH
Q 001111 950 EVDTVTLVALLNLLESRIAFNNVFLRHHLFGIL 982 (1154)
Q Consensus 950 ~l~~~~l~~~~~~~~~~~~~~~~~lr~~~~~~~ 982 (1154)
. ..++-++.|....+ -.|...|..+...|
T Consensus 866 ~-~~~~a~~~L~~al~---D~d~~Vr~~A~~aL 894 (897)
T PRK13800 866 P-GDPAARDALTTALT---DSDADVRAYARRAL 894 (897)
T ss_pred C-CCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 1 13344444433333 14777887776654
No 15
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.57 E-value=0.41 Score=63.22 Aligned_cols=219 Identities=17% Similarity=0.106 Sum_probs=111.2
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHh--
Q 001111 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS-- 737 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~-- 737 (1154)
.+.++..|.|..-+..|+.+|.+..... ....+|...|.++ =.+||..|+.+|+....... ..|+++.+.
T Consensus 656 ~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~~~~~L~~~L~~~--d~~VR~~A~~aL~~~~~~~~-----~~l~~~L~D~d 727 (897)
T PRK13800 656 ALVAALGDGAAAVRRAAAEGLRELVEVL-PPAPALRDHLGSP--DPVVRAAALDVLRALRAGDA-----ALFAAALGDPD 727 (897)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcc-CchHHHHHHhcCC--CHHHHHHHHHHHHhhccCCH-----HHHHHHhcCCC
Confidence 3445556777777777777776541100 1123555555553 33777777777765542211 111111110
Q ss_pred ----------cc-CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHH
Q 001111 738 ----------RR-FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWL 806 (1154)
Q Consensus 738 ----------~~-~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~ 806 (1154)
+. ......+. .+.+-.+-.|+.+...||+.+++.+. .+...|+.+++- .|...+
T Consensus 728 ~~VR~~Av~aL~~~~~~~~l~---~~l~D~~~~VR~~aa~aL~~~~~~~~----~~~~~L~~ll~D--------~d~~VR 792 (897)
T PRK13800 728 HRVRIEAVRALVSVDDVESVA---GAATDENREVRIAVAKGLATLGAGGA----PAGDAVRALTGD--------PDPLVR 792 (897)
T ss_pred HHHHHHHHHHHhcccCcHHHH---HHhcCCCHHHHHHHHHHHHHhccccc----hhHHHHHHHhcC--------CCHHHH
Confidence 00 00000000 00111124678888888888865432 235566677651 137789
Q ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCC
Q 001111 807 AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNT 886 (1154)
Q Consensus 807 a~li~aL~~~~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~ 886 (1154)
++++.+|+.+.-.. .++..+...+.=+ .-.|-.+++++|.++. ..-..+.+..++ . +.
T Consensus 793 ~aA~~aLg~~g~~~-------~~~~~l~~aL~d~------d~~VR~~Aa~aL~~l~----~~~a~~~L~~~L---~--D~ 850 (897)
T PRK13800 793 AAALAALAELGCPP-------DDVAAATAALRAS------AWQVRQGAARALAGAA----ADVAVPALVEAL---T--DP 850 (897)
T ss_pred HHHHHHHHhcCCcc-------hhHHHHHHHhcCC------ChHHHHHHHHHHHhcc----ccchHHHHHHHh---c--CC
Confidence 99999999764321 1112233333222 2356677888776642 111223333332 2 33
Q ss_pred cHHHHHHHHHHhhccccccCCchHHHHHHHHHhc-cCccchh
Q 001111 887 IWQVRVEASRALLDLEFHCNGIDSALSLFIKSVE-EEPSLRG 927 (1154)
Q Consensus 887 ~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~ 927 (1154)
...||.+|.++|-.+ +|...+...+...++ .|+.+|.
T Consensus 851 ~~~VR~~A~~aL~~~----~~~~~a~~~L~~al~D~d~~Vr~ 888 (897)
T PRK13800 851 HLDVRKAAVLALTRW----PGDPAARDALTTALTDSDADVRA 888 (897)
T ss_pred CHHHHHHHHHHHhcc----CCCHHHHHHHHHHHhCCCHHHHH
Confidence 478999999999986 333456666655553 3455554
No 16
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=94.76 E-value=0.03 Score=71.40 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=79.0
Q ss_pred ccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcC-----------CCCccHHHH
Q 001111 433 IFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGN-----------LERPFLKEF 501 (1154)
Q Consensus 433 ~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~tlst~~F~~l~e~vs~-----------~~g~dL~~F 501 (1154)
.|..-.-.|+.++.+|+++++|.+.|.+.+++.+...... ....|...+-...| ..|++++-+
T Consensus 444 ~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~------~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~ 517 (1180)
T KOG1932|consen 444 SYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM------LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMG 517 (1180)
T ss_pred hHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh------HHHHHHHHHHhccCCeeEEEEEEEeeccccccHH
Confidence 3444445799999999999999999999999999876532 23333333322222 247789999
Q ss_pred HHHhhcCCCCceEEEEEEEeccccEEEEEEEeeccCC
Q 001111 502 FPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVK 538 (1154)
Q Consensus 502 f~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~ 538 (1154)
++||+.++|+..+.|...||++++.++..++|..+..
T Consensus 518 i~Q~v~~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g 554 (1180)
T KOG1932|consen 518 IDQWVRTGGHAPFSVFSDFNRKRNALEHEIKQDYTAG 554 (1180)
T ss_pred HHHHhhhccccceeeecccchhhhhhhhhccccccCC
Confidence 9999999999999999999999999999999987654
No 17
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.75 E-value=0.12 Score=47.38 Aligned_cols=71 Identities=28% Similarity=0.294 Sum_probs=58.3
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHh
Q 001111 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (1154)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~ 737 (1154)
..+..|..|+|...|..|++.|++.. +..+...|.+.+.| ..+.||.+|+.+|+++.+++ ....|.+++++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~i~~~~----~~~~L~~~l~~ 73 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG--DPEAIPALIELLKD--EDPMVRRAAARALGRIGDPE----AIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT--HHHHHHHHHHHHTS--SSHHHHHHHHHHHHCCHHHH----THHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHH----HHHHHHHHHcC
Confidence 35677888999999999999999864 45688899999976 47899999999999997654 47778777663
No 18
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.41 E-value=1.6 Score=52.43 Aligned_cols=195 Identities=13% Similarity=-0.001 Sum_probs=131.6
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHH
Q 001111 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1154)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~ 736 (1154)
....+..|..|.|......|+.+|..... ..++.+|.++|.|.. -+||.+||.+|+++..+.. ...|+...+
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~~~~~L~~~L~d~~--~~vr~aaa~ALg~i~~~~a----~~~L~~~L~ 127 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQED--ALDLRSVLAVLQAGP--EGLCAGIQAALGWLGGRQA----EPWLEPLLA 127 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccCC--hHHHHHHHHHhcCCC--HHHHHHHHHHHhcCCchHH----HHHHHHHhc
Confidence 45677788778887778888888886543 235789999998864 4699999999998887653 455666665
Q ss_pred hccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhcc
Q 001111 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (1154)
Q Consensus 737 ~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~ 816 (1154)
. .-| +|+.++..|++..+ .+ | ...|+.+|+ =.|.+.+++.+.+||.+
T Consensus 128 ~-------~~p-----------~vR~aal~al~~r~-~~---~---~~~L~~~L~--------d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 128 A-------SEP-----------PGRAIGLAALGAHR-HD---P---GPALEAALT--------HEDALVRAAALRALGEL 174 (410)
T ss_pred C-------CCh-----------HHHHHHHHHHHhhc-cC---h---HHHHHHHhc--------CCCHHHHHHHHHHHHhh
Confidence 3 112 48888887777633 21 2 345667776 24555899999999987
Q ss_pred ccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhcc-ccCCCCcHHHHHHHH
Q 001111 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKP-FRDFNTIWQVRVEAS 895 (1154)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~-y~~~~~~~~vR~~A~ 895 (1154)
.... .+..+.. ...+.+..|-.+++.++..++ .- +.+ ..+.. |+..|.+...|+++.
T Consensus 175 ~~~~--------a~~~L~~------al~d~~~~VR~aA~~al~~lG-----~~--~A~-~~l~~~~~~~g~~~~~~l~~~ 232 (410)
T TIGR02270 175 PRRL--------SESTLRL------YLRDSDPEVRFAALEAGLLAG-----SR--LAW-GVCRRFQVLEGGPHRQRLLVL 232 (410)
T ss_pred cccc--------chHHHHH------HHcCCCHHHHHHHHHHHHHcC-----CH--hHH-HHHHHHHhccCccHHHHHHHH
Confidence 5421 1122222 267889999999999887652 21 111 12233 788888888888887
Q ss_pred HHhhccccccCCchHHHHHHHHHhcc
Q 001111 896 RALLDLEFHCNGIDSALSLFIKSVEE 921 (1154)
Q Consensus 896 ~~l~~~~~~~~~~~~~l~~~~~~~~~ 921 (1154)
.++. |.+.++.++...+..
T Consensus 233 lal~-------~~~~a~~~L~~ll~d 251 (410)
T TIGR02270 233 LAVA-------GGPDAQAWLRELLQA 251 (410)
T ss_pred HHhC-------CchhHHHHHHHHhcC
Confidence 7666 335788888877755
No 19
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.90 E-value=2.7 Score=48.76 Aligned_cols=216 Identities=23% Similarity=0.201 Sum_probs=133.1
Q ss_pred CHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHH
Q 001111 656 PVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (1154)
Q Consensus 656 p~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f 735 (1154)
+.-..+.++-.++|..-+..|...|.... +..++..|.+.+.|..+ .||-.|+.+|++...++. ...|++.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--~~~av~~l~~~l~d~~~--~vr~~a~~aLg~~~~~~a----~~~li~~l 114 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG--SEEAVPLLRELLSDEDP--RVRDAAADALGELGDPEA----VPPLVELL 114 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--hHHHHHHHHHHhcCCCH--HHHHHHHHHHHccCChhH----HHHHHHHH
Confidence 33334444445679999999999999864 45678889999999765 999999999999998764 78888887
Q ss_pred HhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCC----CCCchHHHHHHHHH
Q 001111 736 KSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNG----NPYSDVFWLAALVQ 811 (1154)
Q Consensus 736 ~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~----N~ysD~~y~a~li~ 811 (1154)
.. ++ +++|+.+...||+.+++.+. ..=|+++++-++... ...-+..-+.+.+.
T Consensus 115 ~~---d~--------------~~~vR~~aa~aL~~~~~~~a------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 115 EN---DE--------------NEGVRAAAARALGKLGDERA------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred Hc---CC--------------cHhHHHHHHHHHHhcCchhh------hHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 74 22 35689999999999998765 333455554322110 00011135677778
Q ss_pred HhhccccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHH
Q 001111 812 SVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVR 891 (1154)
Q Consensus 812 aL~~~~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR 891 (1154)
+|+..... .....++..+. -.. ..|-.++..+|.++. .+..... ..+.+ ...+..+.||
T Consensus 172 ~l~~~~~~----~~~~~l~~~l~----~~~------~~vr~~Aa~aL~~~~---~~~~~~~---~~l~~-~~~~~~~~vr 230 (335)
T COG1413 172 ALGELGDP----EAIPLLIELLE----DED------ADVRRAAASALGQLG---SENVEAA---DLLVK-ALSDESLEVR 230 (335)
T ss_pred HHHHcCCh----hhhHHHHHHHh----Cch------HHHHHHHHHHHHHhh---cchhhHH---HHHHH-HhcCCCHHHH
Confidence 88765432 11222222222 111 155556666666653 1110111 11122 2345568999
Q ss_pred HHHHHHhhccccccCCchHHHHHHHHHhcc-Cccchhh
Q 001111 892 VEASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRGQ 928 (1154)
Q Consensus 892 ~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 928 (1154)
.+|+.+|-.++. ..+...+...+.. ++..+..
T Consensus 231 ~~~~~~l~~~~~-----~~~~~~l~~~l~~~~~~~~~~ 263 (335)
T COG1413 231 KAALLALGEIGD-----EEAVDALAKALEDEDVILALL 263 (335)
T ss_pred HHHHHHhcccCc-----chhHHHHHHHHhccchHHHHH
Confidence 999999998643 3556666666654 4444443
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.85 E-value=0.63 Score=57.36 Aligned_cols=205 Identities=17% Similarity=0.167 Sum_probs=122.2
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCC--chhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchh--h-HHHHHH
Q 001111 659 MWINQLEKDGDVVAQAQAIAALEALPHL--SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWA--G-LLHLVK 733 (1154)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~--s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~--g-~~~L~~ 733 (1154)
.+...|+ +++-.-|.-|++.|.....+ .......+.+.+.|+.. -||..||.+|.++....++.. + .+.|.+
T Consensus 83 ~l~kdl~-~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~ 159 (526)
T PF01602_consen 83 SLQKDLN-SPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSP--YVRKKAALALLKIYRKDPDLVEDELIPKLKQ 159 (526)
T ss_dssp HHHHHHC-SSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSH--HHHHHHHHHHHHHHHHCHCCHHGGHHHHHHH
T ss_pred HHHHhhc-CCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Confidence 3344443 57889999999999986432 12244457777888654 899999999999876433321 2 333333
Q ss_pred HHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhh-ccCC--CChHHHHHHHHHHhhccCCCCCCCchHHHHHHHH
Q 001111 734 FYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR-AADN--KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALV 810 (1154)
Q Consensus 734 ~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr-~~~g--~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li 810 (1154)
... +++ .-|+.+...++..+| +.+. ..-+...+-|.+++ .-.|.|-...++
T Consensus 160 lL~----d~~--------------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l--------~~~~~~~q~~il 213 (526)
T PF01602_consen 160 LLS----DKD--------------PSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLL--------SDPDPWLQIKIL 213 (526)
T ss_dssp HTT----HSS--------------HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHH--------TCCSHHHHHHHH
T ss_pred hcc----CCc--------------chhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcc--------cccchHHHHHHH
Confidence 332 222 247777788888882 2222 22333444555555 455677788999
Q ss_pred HHhhccccccccHHHH--HHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCc-hhhhhhhhccccCCCCc
Q 001111 811 QSVGELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTI 887 (1154)
Q Consensus 811 ~aL~~~~~~~~~~~~~--~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~-~~~~~~~~~~y~~~~~~ 887 (1154)
+.|....... .... ..+++.+..+++ |=...|...|.+++..+. ...+ ...+...+..+.. ...
T Consensus 214 ~~l~~~~~~~--~~~~~~~~~i~~l~~~l~------s~~~~V~~e~~~~i~~l~----~~~~~~~~~~~~L~~lL~-s~~ 280 (526)
T PF01602_consen 214 RLLRRYAPME--PEDADKNRIIEPLLNLLQ------SSSPSVVYEAIRLIIKLS----PSPELLQKAINPLIKLLS-SSD 280 (526)
T ss_dssp HHHTTSTSSS--HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHS----SSHHHHHHHHHHHHHHHT-SSS
T ss_pred HHHHhcccCC--hhhhhHHHHHHHHHHHhh------ccccHHHHHHHHHHHHhh----cchHHHHhhHHHHHHHhh-ccc
Confidence 9998764322 2233 457777777777 444556678888877652 2122 1111122222223 344
Q ss_pred HHHHHHHHHHhhcccccc
Q 001111 888 WQVRVEASRALLDLEFHC 905 (1154)
Q Consensus 888 ~~vR~~A~~~l~~~~~~~ 905 (1154)
..+|..|+++|..+....
T Consensus 281 ~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 281 PNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHHHHHHCCHC
T ss_pred chhehhHHHHHHHhhccc
Confidence 679999999999986543
No 21
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=92.43 E-value=0.081 Score=52.29 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCccccCC-----------CCcchhhhhHHHhHHHHHHHHH
Q 001111 347 IKLSFALARQWFGVYITPEL-----------PNDEWLLDGLAGFLTDSFIKKF 388 (1154)
Q Consensus 347 ~~IaHELAHQWFGnlVt~~~-----------W~D~WLnEGfA~Yl~~l~~~~~ 388 (1154)
.+++||..|.|-|..+.|.. -+.+|+-||++.|+..+.+.+.
T Consensus 6 ~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 6 GLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 47999999999987776653 4468999999999999887664
No 22
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=92.25 E-value=0.5 Score=55.14 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhh--cCCccccC--CCCcchhhhhHHHhHHHHHHHHHh-CCh---HHHHHHHHHhhhhhhcccCCCcccc
Q 001111 346 SIKLSFALARQW--FGVYITPE--LPNDEWLLDGLAGFLTDSFIKKFL-GNN---EARYRRYKANCAVCKADDSGATALS 417 (1154)
Q Consensus 346 ~~~IaHELAHQW--FGnlVt~~--~W~D~WLnEGfA~Yl~~l~~~~~~-G~n---e~r~~~~~~~~~~~~~d~~~~~~L~ 417 (1154)
..+||||+-|+- .-..|... .-.|+|||||+|.-+++++-.+.. |.| ..|+..|.. ...... .
T Consensus 140 ~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~-------~~~~~~--~ 210 (366)
T PF10460_consen 140 YSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNN-------YTSGNY--N 210 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhh-------ccccCC--C
Confidence 347999999984 32333333 346999999999999998866552 111 123332221 000000 0
Q ss_pred CCCccccCCCCccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCCcc
Q 001111 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPF 497 (1154)
Q Consensus 418 s~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~tlst~~F~~l~e~vs~~~g~d 497 (1154)
. +.....+ . ...-..|..+.+++.-|.+..|.+.+++.|. +.... -+.+-...+.+.++. +..
T Consensus 211 ~--~l~~w~~--~--g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~----~~~~t-----ds~avl~aa~~~~~~--~~s 273 (366)
T PF10460_consen 211 C--SLTAWSS--F--GDSLASYSSSYSFGAYLYRQYGGDFYKKLLT----NSSST-----DSEAVLDAAIKQAGP--GNS 273 (366)
T ss_pred c--ceeecCC--C--ccccccchhHHHHHHHHHHHcChHHHHHHHh----cCCCC-----cHHHHHHHHHHhhcC--CCC
Confidence 0 0000100 0 0012348999999999999999888666554 22211 122334444444442 457
Q ss_pred HHHHHHHhhcCC
Q 001111 498 LKEFFPRWVGTC 509 (1154)
Q Consensus 498 L~~Ff~qWv~~~ 509 (1154)
+.++|.+|.-..
T Consensus 274 f~~~l~~w~~A~ 285 (366)
T PF10460_consen 274 FGELLRRWGVAL 285 (366)
T ss_pred HHHHHHHHHHHH
Confidence 999999998776
No 23
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=91.02 E-value=1.2 Score=40.62 Aligned_cols=87 Identities=28% Similarity=0.365 Sum_probs=63.4
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhh
Q 001111 692 NTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV 771 (1154)
Q Consensus 692 ~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~v 771 (1154)
..|.+.|.+ ...+.||.+|+++|+++..++. ++.|+++++ +++ ..|+.+...||+.+
T Consensus 2 ~~L~~~l~~-~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~----d~~--------------~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQN-DPDPQVRAEAARALGELGDPEA----IPALIELLK----DED--------------PMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHT-SSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHT----SSS--------------HHHHHHHHHHHHCC
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHc----CCC--------------HHHHHHHHHHHHHh
Confidence 456777733 3589999999999998775533 667776663 221 24999999999998
Q ss_pred hccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhh
Q 001111 772 RAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVG 814 (1154)
Q Consensus 772 r~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~ 814 (1154)
. .+++.+.|.++++ ++ +|...+.+.+.|||
T Consensus 59 ~------~~~~~~~L~~~l~---~~----~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 G------DPEAIPALIKLLQ---DD----DDEVVREAAAEALG 88 (88)
T ss_dssp H------HHHTHHHHHHHHT---C-----SSHHHHHHHHHHHH
T ss_pred C------CHHHHHHHHHHHc---CC----CcHHHHHHHHhhcC
Confidence 5 4778999999988 22 24556788888886
No 24
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=90.90 E-value=0.12 Score=51.52 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcCCcc---ccCCCCcchhhhhHHHhHHHHHH
Q 001111 348 KLSFALARQWFGVYI---TPELPNDEWLLDGLAGFLTDSFI 385 (1154)
Q Consensus 348 ~IaHELAHQWFGnlV---t~~~W~D~WLnEGfA~Yl~~l~~ 385 (1154)
+++||-+||=.-|.= -...| =.|+.||||+|++..-+
T Consensus 4 T~~HEa~HQl~~N~Gl~~r~~~~-P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 4 TIAHEATHQLAFNTGLHPRLADW-PRWVSEGLATYFETPGM 43 (128)
T ss_pred HHHHHHHHHHHHHccccccCCCC-chHHHHhHHHHcCCCcc
Confidence 689999999765431 11222 27999999999986554
No 25
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.12 E-value=12 Score=47.35 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=38.8
Q ss_pred CCcHHHHHHHHHHHhCCCC--chhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhccCCC
Q 001111 668 GDVVAQAQAIAALEALPHL--SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDE 742 (1154)
Q Consensus 668 rDV~aQ~eAi~~L~~~~~~--s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~~~~ 742 (1154)
.+-..+--|+.+|...-+. ......-..+.+.+++.| ||..|+.|+.++--+.++- ..|.+..|+++-|+.
T Consensus 119 ~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~--irKKA~Lca~r~irK~P~l--~e~f~~~~~~lL~ek 191 (866)
T KOG1062|consen 119 SNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPY--IRKKAALCAVRFIRKVPDL--VEHFVIAFRKLLCEK 191 (866)
T ss_pred CCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHH--HHHHHHHHHHHHHHcCchH--HHHhhHHHHHHHhhc
Confidence 4555556677777765321 111122234555555444 8888888888876544322 445555555555543
No 26
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.06 E-value=3.1 Score=52.15 Aligned_cols=230 Identities=17% Similarity=0.202 Sum_probs=140.5
Q ss_pred CCcEEEEEecCCCHH-HHHHHHhhCCCcHHHHHHHHHHHhC----CC-------CchhHHHHHHHHhccCCchHHHHHHH
Q 001111 644 EMEYLAEIHFNQPVQ-MWINQLEKDGDVVAQAQAIAALEAL----PH-------LSFNVVNTLNNFLSDSKAFWRVRIEA 711 (1154)
Q Consensus 644 d~ewl~~v~~~qp~~-m~~~QL~~drDV~aQ~eAi~~L~~~----~~-------~s~~~~~~L~~~l~d~~~F~~VR~~A 711 (1154)
=.+||+++-+.+++. ..+-|+-...|+..|.-||+-|... |. .++..++-|...|.|.| ==||-+|
T Consensus 109 ~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr--E~IRNe~ 186 (970)
T KOG0946|consen 109 LGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR--EPIRNEA 186 (970)
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh--hhhchhH
Confidence 468889888887754 3455555667999998888766642 10 11224556777787764 3589999
Q ss_pred HHHHHcccccccchhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccC----CCChHHHHHHHH
Q 001111 712 AYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD----NKSPREAVEFVL 787 (1154)
Q Consensus 712 a~aLa~~a~~~~~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~----g~~p~~v~~fLl 787 (1154)
..-|.......+.-.-+.+.-.+|-.+| +.|+.+. |..-.++.-||.
T Consensus 187 iLlL~eL~k~n~~IQKlVAFENaFerLf-----------------------------sIIeeEGg~dGgIVveDCL~ll~ 237 (970)
T KOG0946|consen 187 ILLLSELVKDNSSIQKLVAFENAFERLF-----------------------------SIIEEEGGLDGGIVVEDCLILLN 237 (970)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHH-----------------------------HHHHhcCCCCCcchHHHHHHHHH
Confidence 9888877765443333444455665543 5555553 477889999999
Q ss_pred HHhhccCCCCCCCchHHHHHHHHHHhhccccccc-c----HHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHH
Q 001111 788 QLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQ-S----ILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (1154)
Q Consensus 788 dll~~NDNs~N~ysD~~y~a~li~aL~~~~~~~~-~----~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~ 862 (1154)
+|||+|--..|-|--+-||..|.+-|..-.+++. . ..=...++..+.-.+. -+-|+-.--+|-+|-+++-+-.
T Consensus 238 NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~--lVsP~Nt~~~~~q~qk~l~ss~ 315 (970)
T KOG0946|consen 238 NLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRS--LVSPGNTSSITHQNQKALVSSH 315 (970)
T ss_pred HHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHH--hcCCCCcHHHHHHHHHHHHHcc
Confidence 9999999999999999999999887775444431 0 1111222222221111 1245444445557766655422
Q ss_pred HHhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccCCchHHHHHHHHHh
Q 001111 863 LKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSV 919 (1154)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~ 919 (1154)
. ++.+|.++ ..+|-|-+||-.++-.+-.. .+|...+=..|.+..
T Consensus 316 -----l--l~~Lc~il---~~~~vp~dIltesiitvAev---VRgn~~nQ~~F~~v~ 359 (970)
T KOG0946|consen 316 -----L--LDVLCTIL---MHPGVPADILTESIITVAEV---VRGNARNQDEFADVT 359 (970)
T ss_pred -----h--HHHHHHHH---cCCCCcHhHHHHHHHHHHHH---HHhchHHHHHHhhcc
Confidence 1 34455543 34567778887777665553 244444444555444
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=89.41 E-value=13 Score=45.89 Aligned_cols=238 Identities=18% Similarity=0.175 Sum_probs=135.9
Q ss_pred CCHHHHHHHHhhCCCcHHHHHHHHHHHhC----CCCchh-HHHHHHHHhccCCchHHHHHHHHHHHHcc-cccccchhhH
Q 001111 655 QPVQMWINQLEKDGDVVAQAQAIAALEAL----PHLSFN-VVNTLNNFLSDSKAFWRVRIEAAYALANT-ASEETDWAGL 728 (1154)
Q Consensus 655 qp~~m~~~QL~~drDV~aQ~eAi~~L~~~----~~~s~~-~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~-a~~~~~~~g~ 728 (1154)
++-..-+.++-.|++-.-|-.|+.++.+. |+.... ....|.+.|.|+. .+|+..|+.+|..+ .++.....-+
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~--~~V~~~a~~~l~~i~~~~~~~~~~~ 190 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD--PSVVSAALSLLSEIKCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS--HHHHHHHHHHHHHHHCTHHHHTTHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHccCcchhhhhH
Confidence 34455677888899999999999777754 443333 5788889998865 89999999999999 3332211112
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCCh--HHHHHHHHHHhhccCCCCCCCchHHHH
Q 001111 729 LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP--REAVEFVLQLLKYNDNNGNPYSDVFWL 806 (1154)
Q Consensus 729 ~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p--~~v~~fLldll~~NDNs~N~ysD~~y~ 806 (1154)
+.+.+...+.- + ..+-++|..+.+.+..+-..+...+ ..+.+.|+.+|. .++.--+
T Consensus 191 ~~~~~~L~~~l-----~---------~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~--------s~~~~V~ 248 (526)
T PF01602_consen 191 PKLIRILCQLL-----S---------DPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ--------SSSPSVV 248 (526)
T ss_dssp HHHHHHHHHHH-----T---------CCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHhhhcc-----c---------ccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh--------ccccHHH
Confidence 22333322211 0 1123578777777766543332233 456777777777 2222233
Q ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCC
Q 001111 807 AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNT 886 (1154)
Q Consensus 807 a~li~aL~~~~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~ 886 (1154)
-+.++++..+.. .......++.-+-+++. |...-+-..+|++|.+++......+....+ .+ .+-..+.
T Consensus 249 ~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~-~~--~~l~~~~ 316 (526)
T PF01602_consen 249 YEAIRLIIKLSP---SPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPAVFNQSL-IL--FFLLYDD 316 (526)
T ss_dssp HHHHHHHHHHSS---SHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHHHGTHHH-HH--HHHHCSS
T ss_pred HHHHHHHHHhhc---chHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchhhhhhhh-hh--heecCCC
Confidence 344444443322 22356777777787775 333435566777777764221001111111 11 1222344
Q ss_pred cHHHHHHHHHHhhccccccCCchHHHHHHHHHh-cc-Cccchhhh
Q 001111 887 IWQVRVEASRALLDLEFHCNGIDSALSLFIKSV-EE-EPSLRGQV 929 (1154)
Q Consensus 887 ~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~ 929 (1154)
...||..|++.|..+.- ......++.-++.++ +. |+.++..+
T Consensus 317 d~~Ir~~~l~lL~~l~~-~~n~~~Il~eL~~~l~~~~d~~~~~~~ 360 (526)
T PF01602_consen 317 DPSIRKKALDLLYKLAN-ESNVKEILDELLKYLSELSDPDFRREL 360 (526)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC--HHHHHHH
T ss_pred ChhHHHHHHHHHhhccc-ccchhhHHHHHHHHHHhccchhhhhhH
Confidence 57899999999999854 233346788888888 55 66666543
No 28
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=87.38 E-value=1.5 Score=47.47 Aligned_cols=171 Identities=15% Similarity=0.094 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHhcCCC-CCCCCccEEE--eCCCccccccccC---ceeeeeccccccCccc-chhhhhhHHHHHHHH
Q 001111 281 TVEFFHNAFSHYETYLDAK-FPFGSYKQVF--LAPEMAVSSSTFG---AAMGIFSSQILYDEKV-IDQAIDTSIKLSFAL 353 (1154)
Q Consensus 281 t~~~~~~al~ffee~fG~~-YPf~ky~~Vf--Vp~~~~~~~~~~g---agLii~s~~LL~~~~~-~d~~~~~~~~IaHEL 353 (1154)
+...+..+..+..+.|-.+ .+-+..+.|. +. +|.+--...| ..-|.+|.+.+-.... -+...+...+|.||+
T Consensus 26 a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~-~~~gVA~t~gd~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~ 104 (205)
T PF04450_consen 26 AEQVLRDASRFVWRLLYQSPADRKPVRSVTLILD-DMDGVAYTSGDDDHKEIHFSARYIAKYPADGDVRDEIIGVLYHEM 104 (205)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEE-CCCeeEEEecCCCccEEEEeHHHHhhcccccchHHHHHHHHHHHH
Confidence 3444555556666655433 2223344442 22 2322112222 0234445555432211 122345566999999
Q ss_pred HHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHHHhhhhhhcccCCCccccCCCccccCCCCccccc
Q 001111 354 ARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGI 433 (1154)
Q Consensus 354 AHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~~~~~~~~~d~~~~~~L~s~~s~~~l~~~~~~~~ 433 (1154)
+|-|=.+--... --||.||+|.|+-.. .|-.. .... .+ ... ..
T Consensus 105 ~H~~Q~~~~~~~---P~~liEGIADyVRl~-----aG~~~----------------~~w~-----~p----~~~----~~ 147 (205)
T PF04450_consen 105 VHCWQWDGRGTA---PGGLIEGIADYVRLK-----AGYAP----------------PHWK-----RP----GGG----DS 147 (205)
T ss_pred HHHhhcCCCCCC---ChhheecHHHHHHHH-----cCCCC----------------cccc-----CC----CCC----CC
Confidence 997755443222 249999999999432 11100 0000 00 000 01
Q ss_pred cccceeccHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCCccHHHHHHH
Q 001111 434 FGKIRSCKSVAILQMLEK-QMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPR 504 (1154)
Q Consensus 434 f~~i~Y~Kg~lVL~MLe~-~lG~e~F~~~L~~yl~~~~~~~~~~tlst~~F~~l~e~vs~~~g~dL~~Ff~q 504 (1154)
+ .-.|.-.+.+|.-||. +.|+ .|-+-|++=+.+..+. +...|. .+. |++++++++.
T Consensus 148 w-d~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y~------~~~~~~----~l~---G~~v~~LW~e 204 (205)
T PF04450_consen 148 W-DDGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKYS------SDDFWK----ELL---GKPVDELWAE 204 (205)
T ss_pred c-ccccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCCC------cHhHHH----HHH---CcCHHHHHhh
Confidence 1 1237889999999998 6654 5666666666554441 222333 333 4568888764
No 29
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.11 E-value=1.9 Score=54.63 Aligned_cols=129 Identities=19% Similarity=0.153 Sum_probs=73.0
Q ss_pred CCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHH
Q 001111 776 NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCI 855 (1154)
Q Consensus 776 g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l 855 (1154)
..+..++.+.|.+.|+-.. ...|..-+-..|+||||+..+. ++..+..++.-+. ..-..+-++|+
T Consensus 481 ~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~LkaLgN~g~~~--------~i~~l~~~i~~~~---~~~~~~R~~Ai 545 (618)
T PF01347_consen 481 RCIIEKYVPYLEQELKEAV----SRGDEEEKIVYLKALGNLGHPE--------SIPVLLPYIEGKE---EVPHFIRVAAI 545 (618)
T ss_dssp SS--GGGTHHHHHHHHHHH----HTT-HHHHHHHHHHHHHHT-GG--------GHHHHHTTSTTSS----S-HHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHh----hccCHHHHHHHHHHhhccCCch--------hhHHHHhHhhhcc---ccchHHHHHHH
Confidence 4445556666666666111 1234456778899999986532 3555555555555 33445667888
Q ss_pred HHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccCCchHHHHHHHHHhccCccchh
Q 001111 856 RTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRG 927 (1154)
Q Consensus 856 ~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 927 (1154)
.+|++++ ...|....--++.-|.+.+....||++|+..|++ +......|+-+...+..||+.-.
T Consensus 546 ~Alr~~~----~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~----~~P~~~~l~~i~~~l~~E~~~QV 609 (618)
T PF01347_consen 546 QALRRLA----KHCPEKVREILLPIFMNTTEDPEVRIAAYLILMR----CNPSPSVLQRIAQSLWNEPSNQV 609 (618)
T ss_dssp HTTTTGG----GT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH----T---HHHHHHHHHHHTT-S-HHH
T ss_pred HHHHHHh----hcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCCCHHHHHHHHHHHhhCchHHH
Confidence 8887653 2334221112233456777788999999999998 32234778888889988987443
No 30
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.75 E-value=16 Score=45.93 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhhhhc----cCCCCh----HHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHH
Q 001111 759 FVLEAIPHAVAMVRA----ADNKSP----REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLL 830 (1154)
Q Consensus 759 fvqkaip~ala~vr~----~~g~~p----~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~~~~~~~~~~~~~ 830 (1154)
+|..+..-|++.+-. ....|| .++.+.|.+.|+---+. .|..-+-..|+||||+..+ ..+
T Consensus 412 ~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~LkaLGN~g~~--------~~i 479 (574)
T smart00638 412 YLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK----GDEEEIQLYLKALGNAGHP--------SSI 479 (574)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc----CCchheeeHHHhhhccCCh--------hHH
Confidence 566666666663322 123355 56777777777532211 2333567889999998763 234
Q ss_pred HHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccCCchH
Q 001111 831 KRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDS 910 (1154)
Q Consensus 831 ~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~~~ 910 (1154)
..+..++.-|.=.|. -+-++|+.+|.+++.. .|....-.++.-|.+......||++|+-.|++ +.....
T Consensus 480 ~~l~~~l~~~~~~~~---~iR~~Av~Alr~~a~~----~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~----t~P~~~ 548 (574)
T smart00638 480 KVLEPYLEGAEPLST---FIRLAAILALRNLAKR----DPRKVQEVLLPIYLNRAEPPEVRMAAVLVLME----TKPSVA 548 (574)
T ss_pred HHHHHhcCCCCCCCH---HHHHHHHHHHHHHHHh----CchHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCCHH
Confidence 555666553433333 3456667777666421 22221112334466777789999999999999 333347
Q ss_pred HHHHHHHHhccCccchh
Q 001111 911 ALSLFIKSVEEEPSLRG 927 (1154)
Q Consensus 911 ~l~~~~~~~~~~~~~~~ 927 (1154)
.|+-+...+..||+.-.
T Consensus 549 ~l~~ia~~l~~E~~~QV 565 (574)
T smart00638 549 LLQRIAELLNKEPNLQV 565 (574)
T ss_pred HHHHHHHHHhhcCcHHH
Confidence 78899999988887443
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=82.18 E-value=94 Score=40.40 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=43.1
Q ss_pred HHHHHHh---hCCCcHHHHHHHHHHHhCCCCc--hhHHHHHHHHhccCCchHHHHHHHHHHHHcccc
Q 001111 659 MWINQLE---KDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1154)
Q Consensus 659 m~~~QL~---~drDV~aQ~eAi~~L~~~~~~s--~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~ 720 (1154)
+-++.|+ .|++-.-|--|++.|....... ..+...+.++|.|.. --||..||.|++|+-.
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~--pYVRKtAalai~Kly~ 169 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPD--PYVRKTAAMGLGKLFH 169 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHh
Confidence 3344444 3578888999999999775432 224556788898876 4599999999999643
No 32
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=74.46 E-value=4.1 Score=29.19 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcccccccchhhHHHHHHHHH
Q 001111 707 VRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1154)
Q Consensus 707 VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~ 736 (1154)
||.+||.+|+++..++ .++.|+++.+
T Consensus 1 VR~~Aa~aLg~igd~~----ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR----AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHH----HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH----HHHHHHHHhc
Confidence 7999999999999865 3777777654
No 33
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=74.07 E-value=3.2 Score=30.23 Aligned_cols=27 Identities=41% Similarity=0.421 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcccccccchhhHHHHHHHH
Q 001111 705 WRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (1154)
Q Consensus 705 ~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f 735 (1154)
|.||.+||.+|+++.+++. ...|+++.
T Consensus 1 ~~vR~~aa~aLg~~~~~~a----~~~L~~~l 27 (30)
T smart00567 1 PLVRHEAAFALGQLGDEEA----VPALIKAL 27 (30)
T ss_pred CHHHHHHHHHHHHcCCHhH----HHHHHHHh
Confidence 5799999999999977653 56666554
No 34
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=72.57 E-value=2e+02 Score=37.73 Aligned_cols=183 Identities=20% Similarity=0.268 Sum_probs=106.3
Q ss_pred cCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCCh
Q 001111 700 DSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP 779 (1154)
Q Consensus 700 d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p 779 (1154)
|++.-|+||-+||++|+..-+.. ...|.++|+ ..=|.-+++.++..-..-
T Consensus 341 DeD~SWkVRRaAaKcl~a~IsSR-----~E~L~~~~q-------------------------~l~p~lI~RfkEREEnVk 390 (1233)
T KOG1824|consen 341 DEDMSWKVRRAAAKCLEAVISSR-----LEMLPDFYQ-------------------------TLGPALISRFKEREENVK 390 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHhcc-----HHHHHHHHH-------------------------HhCHHHHHHHHHHhhhHH
Confidence 56789999999999999877643 445555555 444666788877766677
Q ss_pred HHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccHHHH----HHHHHHHHHHhhcccccCCCCcHhHHHHH
Q 001111 780 REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFL----SSLLKRIDRLLQFDRLMPSYNGILTISCI 855 (1154)
Q Consensus 780 ~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~~~~~~~~~----~~~~~ei~r~~~~D~~~pSy~~vvt~~~l 855 (1154)
.++..-++++|+.--+-..-|.|+=-.-. +-.. .+...+ -.+++.|.|.++ ++-+|+ -++|+
T Consensus 391 ~dvf~~yi~ll~qt~~~~~~~~d~d~~e~-----~g~~---s~~~~L~~~~~~iVkai~~qlr-~ks~kt-----~~~cf 456 (1233)
T KOG1824|consen 391 ADVFHAYIALLKQTRPVIEVLADNDAMEQ-----GGTP---SDLSMLSDQVPLIVKAIQKQLR-EKSVKT-----RQGCF 456 (1233)
T ss_pred HHHHHHHHHHHHcCCCCcccccCchhhhc-----cCCc---cchHHHHhhhHHHHHHHHHHHh-hccccc-----hhhHH
Confidence 78888888888844444433432211111 1111 011122 247888899888 666662 35788
Q ss_pred HHHHHHHHHhcCCC--chhh-hhhhhccccCCCCcHHHHHHHHHHhhccccccCCch------HHHHHHHHHhccCccch
Q 001111 856 RTLTQIALKLSGFI--SLDQ-VVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGID------SALSLFIKSVEEEPSLR 926 (1154)
Q Consensus 856 ~~l~~l~~~~~~~~--~~~~-~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~~------~~l~~~~~~~~~~~~~~ 926 (1154)
..|..|...+-|.+ ..+. +=.....+.+.......++.|+-+|.-.-. ..|.. ++|.=.+...-.||+..
T Consensus 457 ~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~-s~~p~~fhp~~~~Ls~~v~~aV~d~fyK 535 (1233)
T KOG1824|consen 457 LLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALI-SHPPEVFHPHLSALSPPVVAAVGDPFYK 535 (1233)
T ss_pred HHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHh-cCChhhcccchhhhhhHHHHHhcCchHh
Confidence 88877753221111 1111 112334556666678899999888876522 12211 33443444445577765
Q ss_pred h
Q 001111 927 G 927 (1154)
Q Consensus 927 ~ 927 (1154)
.
T Consensus 536 i 536 (1233)
T KOG1824|consen 536 I 536 (1233)
T ss_pred h
Confidence 4
No 35
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=72.23 E-value=2.4e+02 Score=34.55 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=65.8
Q ss_pred HhhCCCcHHHHHHHHHHHhC---CCC-chhHHHHHHHHhccCC--chHHHHHHHHHHHHcccccccc--hhhHHHHHHHH
Q 001111 664 LEKDGDVVAQAQAIAALEAL---PHL-SFNVVNTLNNFLSDSK--AFWRVRIEAAYALANTASEETD--WAGLLHLVKFY 735 (1154)
Q Consensus 664 L~~drDV~aQ~eAi~~L~~~---~~~-s~~~~~~L~~~l~d~~--~F~~VR~~Aa~aLa~~a~~~~~--~~g~~~L~~~f 735 (1154)
+..+....+|..|.+.|... ... +...+..+-+++.+.. --+.-|.+|-.+|.+....-.. +.-.+.|.++.
T Consensus 37 i~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl 116 (464)
T PF11864_consen 37 IDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWL 116 (464)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHH
Confidence 44455667888888777643 222 2334445555555431 2345777788888776654221 11122333333
Q ss_pred HhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhh-------------ccCCCChHHHHHHHHHHhhccCCCCCCCch
Q 001111 736 KSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR-------------AADNKSPREAVEFVLQLLKYNDNNGNPYSD 802 (1154)
Q Consensus 736 ~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr-------------~~~g~~p~~v~~fLldll~~NDNs~N~ysD 802 (1154)
...+ .++..|-...+ +.+.....+..+|+.|++|||-+.- |
T Consensus 117 ~~~~----------------------~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l----~ 170 (464)
T PF11864_consen 117 EPSY----------------------QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYL----D 170 (464)
T ss_pred HHHH----------------------HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCC----C
Confidence 2211 11111111111 0122345688999999999886543 3
Q ss_pred HHHHHHHHHHhhcc
Q 001111 803 VFWLAALVQSVGEL 816 (1154)
Q Consensus 803 ~~y~a~li~aL~~~ 816 (1154)
.--+..++..+..+
T Consensus 171 e~~i~~lv~~i~~i 184 (464)
T PF11864_consen 171 EDEISSLVDQICTI 184 (464)
T ss_pred HHHHHHHHHHHHHH
Confidence 34577777777665
No 36
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=67.75 E-value=1.9e+02 Score=35.01 Aligned_cols=199 Identities=16% Similarity=0.057 Sum_probs=120.8
Q ss_pred cCCCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHh-ccCCchHHHHHHHHHHHHcccccccchhhHHHH
Q 001111 653 FNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFL-SDSKAFWRVRIEAAYALANTASEETDWAGLLHL 731 (1154)
Q Consensus 653 ~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l-~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L 731 (1154)
+..|+|-|..=-+-|.-+.|+++++..... .....|...| .|+. =+||.+|+.+|.....+. ++..|
T Consensus 24 ~~~p~~~l~~la~ldeRL~AhLdgL~~~G~------~a~~~L~~aL~~d~~--~ev~~~aa~al~~~~~~~----~~~~L 91 (410)
T TIGR02270 24 LVAPDYVLEDLAELEERLLAHVDGLVLAGK------AATELLVSALAEADE--PGRVACAALALLAQEDAL----DLRSV 91 (410)
T ss_pred hcCCCCCHHHHHhHHHHHHHHHHHHHHhhH------hHHHHHHHHHhhCCC--hhHHHHHHHHHhccCChH----HHHHH
Confidence 445666554444445577888777776652 3567788888 3443 478889999998665543 25666
Q ss_pred HHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHH
Q 001111 732 VKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQ 811 (1154)
Q Consensus 732 ~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~ 811 (1154)
+++... ++. -|+.++..||+.+. ++.+...|+.+|+ -.|.+.+++.+.
T Consensus 92 ~~~L~d----~~~--------------~vr~aaa~ALg~i~------~~~a~~~L~~~L~--------~~~p~vR~aal~ 139 (410)
T TIGR02270 92 LAVLQA----GPE--------------GLCAGIQAALGWLG------GRQAEPWLEPLLA--------ASEPPGRAIGLA 139 (410)
T ss_pred HHHhcC----CCH--------------HHHHHHHHHHhcCC------chHHHHHHHHHhc--------CCChHHHHHHHH
Confidence 665542 111 27899999998775 5677888999995 234568888889
Q ss_pred HhhccccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHH
Q 001111 812 SVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVR 891 (1154)
Q Consensus 812 aL~~~~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR 891 (1154)
+|+.-... . ...+ ...++ -+||. |-.+++++|..++. ...+ ..+. .. ..+.-..||
T Consensus 140 al~~r~~~--~---~~~L----~~~L~----d~d~~--Vra~A~raLG~l~~--~~a~--~~L~----~a-l~d~~~~VR 195 (410)
T TIGR02270 140 ALGAHRHD--P---GPAL----EAALT----HEDAL--VRAAALRALGELPR--RLSE--STLR----LY-LRDSDPEVR 195 (410)
T ss_pred HHHhhccC--h---HHHH----HHHhc----CCCHH--HHHHHHHHHHhhcc--ccch--HHHH----HH-HcCCCHHHH
Confidence 99863321 1 1222 22232 34443 56677777776531 1111 1222 21 223447899
Q ss_pred HHHHHHhhccccccCCchHHHHHHHH-HhccCcc
Q 001111 892 VEASRALLDLEFHCNGIDSALSLFIK-SVEEEPS 924 (1154)
Q Consensus 892 ~~A~~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~ 924 (1154)
.+|..+|..++. ..++..++. ..+..+.
T Consensus 196 ~aA~~al~~lG~-----~~A~~~l~~~~~~~g~~ 224 (410)
T TIGR02270 196 FAALEAGLLAGS-----RLAWGVCRRFQVLEGGP 224 (410)
T ss_pred HHHHHHHHHcCC-----HhHHHHHHHHHhccCcc
Confidence 999999988632 466776666 3344443
No 37
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=66.13 E-value=1.6e+02 Score=38.59 Aligned_cols=123 Identities=12% Similarity=0.253 Sum_probs=62.0
Q ss_pred cCeEEEecCCCCceEEEeCCCchhhHH--------HHHHHHHHHHHHHHHhcCCCC-CCCC-----ccEEEeCCCccccc
Q 001111 253 APFEVLPDHHQSLMSHICLPANVSKIH--------NTVEFFHNAFSHYETYLDAKF-PFGS-----YKQVFLAPEMAVSS 318 (1154)
Q Consensus 253 G~F~~~~~~~~~~v~~y~~P~~~~~~~--------~t~~~~~~al~ffee~fG~~Y-Pf~k-----y~~VfVp~~~~~~~ 318 (1154)
++|..++ +..|.+..+|.+.+.+. ...++=..++++|.++.|..+ |-.. -+.-|+- ++
T Consensus 135 ~~fa~ve---~~~i~lLVP~~Dk~~l~~~~~~~l~~L~~~Y~~i~~~Yd~l~Gl~~~~~~~~~~n~~~kYF~K-----AD 206 (775)
T PF03272_consen 135 SSFALVE---LDYIQLLVPPADKPNLNNKDFKSLDELIDFYNDIFKFYDDLTGLSDDPSDPVDKNFNNKYFAK-----AD 206 (775)
T ss_pred CceEEEE---CCEEEEEeCcchHHHHhhhcccCHHHHHHHHHHHHHHHHhhhCCCCCCCcccccccccceEEE-----ec
Confidence 3455554 24577788887666555 345666788888888888433 2111 1122332 11
Q ss_pred cccCceeeeeccccccCc-ccchhhh---hhHHHHHHHHHHhhcCCccccC-CCCcchhhhhHHHhHHHHHH
Q 001111 319 STFGAAMGIFSSQILYDE-KVIDQAI---DTSIKLSFALARQWFGVYITPE-LPNDEWLLDGLAGFLTDSFI 385 (1154)
Q Consensus 319 ~~~gagLii~s~~LL~~~-~~~d~~~---~~~~~IaHELAHQWFGnlVt~~-~W~D~WLnEGfA~Yl~~l~~ 385 (1154)
..|+|-..|+....-.. .....-. .+--.+-|||+|-+=|.++... .+.+.| |-=+|.++++.++
T Consensus 207 -~~G~G~AYY~~~w~a~ss~s~~~~L~~~~~nW~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~ 276 (775)
T PF03272_consen 207 -KSGPGAAYYGSNWTAQSSSSLSFYLNPSPTNWGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYM 276 (775)
T ss_pred -CCCCCCccccccceecCchhHHHHhCCCCCCchhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhc
Confidence 12333344433322111 1111101 0111578999999988887333 344444 3445555555443
No 38
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=62.24 E-value=21 Score=29.60 Aligned_cols=44 Identities=32% Similarity=0.335 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCC--------CchhHHHHHHHHhccCCchHHHHHHHHHHHHcc
Q 001111 673 QAQAIAALEALPH--------LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANT 718 (1154)
Q Consensus 673 Q~eAi~~L~~~~~--------~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~ 718 (1154)
|..|+.+|+.... ....+...|...|.|+.. .||..|+.||+++
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 4566666654311 112356678888988766 9999999999863
No 39
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=61.90 E-value=14 Score=41.27 Aligned_cols=53 Identities=26% Similarity=0.221 Sum_probs=41.6
Q ss_pred CcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHccccccc
Q 001111 669 DVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET 723 (1154)
Q Consensus 669 DV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~ 723 (1154)
.-.-|.|+.--|+... |..++-.|.+.|.|+.----||.|||+||+.++++++
T Consensus 200 SalfrhEvAfVfGQl~--s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQLQ--SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred hHHHHHHHHHHHhhcc--chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 4455667777777653 3456677888999988888999999999999999875
No 40
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=59.12 E-value=3.7e+02 Score=31.98 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=28.7
Q ss_pred CCCcEEEEEecCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001111 643 PEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1154)
Q Consensus 643 pd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1154)
-+|.=--+++.++++..+...+++|.|-..|-||.+.|..
T Consensus 73 RgFSAPV~l~~~~s~~eL~~L~~~D~D~FnRWdA~Q~L~~ 112 (367)
T PF11940_consen 73 RGFSAPVKLEYDYSDEELAFLAAHDSDPFNRWDAAQTLAT 112 (367)
T ss_dssp TTG-SSSEEE----HHHHHHHHHH-SSHHHHHHHHHHHHH
T ss_pred cCcccceEecCCCCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 3555555677789999999999999999999999988874
No 41
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=58.50 E-value=13 Score=27.39 Aligned_cols=26 Identities=35% Similarity=0.253 Sum_probs=20.3
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHccc
Q 001111 692 NTLNNFLSDSKAFWRVRIEAAYALANTA 719 (1154)
Q Consensus 692 ~~L~~~l~d~~~F~~VR~~Aa~aLa~~a 719 (1154)
..|.+.+.|+ -|.||..|+.+|+.++
T Consensus 3 p~l~~~l~D~--~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 3 PILLQLLNDP--SPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHT-S--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 3566777774 8999999999999875
No 42
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=57.76 E-value=29 Score=37.27 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhhcCCccc----cCCCCcchhhhhHHHhHHHHHH
Q 001111 345 TSIKLSFALARQWFGVYIT----PELPNDEWLLDGLAGFLTDSFI 385 (1154)
Q Consensus 345 ~~~~IaHELAHQWFGnlVt----~~~W~D~WLnEGfA~Yl~~l~~ 385 (1154)
...++|||+.|.+--..+. ..+--|..+.||+|.|++....
T Consensus 65 l~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~ 109 (195)
T PF10026_consen 65 LPALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELY 109 (195)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHc
Confidence 3458999999996433332 1122356789999999876543
No 43
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=57.65 E-value=1e+02 Score=35.56 Aligned_cols=16 Identities=38% Similarity=0.316 Sum_probs=10.6
Q ss_pred cHHHHHHHHHHhhccc
Q 001111 887 IWQVRVEASRALLDLE 902 (1154)
Q Consensus 887 ~~~vR~~A~~~l~~~~ 902 (1154)
-..+|.++-.++...+
T Consensus 288 ~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 288 ANAVRLEAALALGQIG 303 (335)
T ss_pred hhhHHHHHHHHHHhhc
Confidence 3567777777776653
No 44
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=56.98 E-value=13 Score=43.18 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHH
Q 001111 345 TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (1154)
Q Consensus 345 ~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~ 388 (1154)
...+|-||||||=+.. -+|.=+||+||++.+..-.++.
T Consensus 165 LA~LIfHELaHq~~Yv------~~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 165 LARLIFHELAHQTLYV------KGDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHhhceeec------CCCchhhHHHHHHHHHHHHHHH
Confidence 4568999999995432 2477899999999987655443
No 45
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=55.65 E-value=42 Score=44.56 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=37.3
Q ss_pred hccCccchhhhhHHHHHhhhhhhccCCCCCCCCChHHHHHHHHHHhccccccchhhHhhHHHHH
Q 001111 919 VEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGIL 982 (1154)
Q Consensus 919 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~lr~~~~~~~ 982 (1154)
+.+||.+.++--|+.-+..+|.|.|+..+ |+--|..++..|.. .|++||+..|+-|
T Consensus 586 Llsd~~~~Vkr~Lle~i~~LC~FFGk~ks----ND~iLshLiTfLND----kDw~LR~aFfdsI 641 (1431)
T KOG1240|consen 586 LLSDSPPIVKRALLESIIPLCVFFGKEKS----NDVILSHLITFLND----KDWRLRGAFFDSI 641 (1431)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhhhccc----ccchHHHHHHHhcC----ccHHHHHHHHhhc
Confidence 34465555554456678999999876643 44455556666555 3899999988764
No 46
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=55.61 E-value=1.1e+02 Score=34.45 Aligned_cols=71 Identities=25% Similarity=0.179 Sum_probs=50.5
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHH
Q 001111 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (1154)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f 735 (1154)
.|+++--.|.....-.|+...|..... ..++.+|...|.|+.-==-||-|||+||+.....+. +..|.|+.
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~--~~Av~~l~~vl~desq~pmvRhEAaealga~~~~~~----~~~l~k~~ 109 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD--EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPES----LEILTKYI 109 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc--chhhHHHHHHhcccccchHHHHHHHHHHHhhcchhh----HHHHHHHh
Confidence 455555555545555566777776533 246789999999999999999999999999885443 55666655
No 47
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=51.18 E-value=14 Score=40.77 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHH
Q 001111 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKK 387 (1154)
Q Consensus 346 ~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~ 387 (1154)
..+|-||||||=|... +|.=+||+||++.+..-+++
T Consensus 198 A~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~ 233 (376)
T COG4324 198 ASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRK 233 (376)
T ss_pred HHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHH
Confidence 3479999999976543 57789999999998765544
No 48
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=47.99 E-value=7.9e+02 Score=33.60 Aligned_cols=297 Identities=14% Similarity=0.096 Sum_probs=154.7
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHH-------hccCCchHHHHHHHHHHHHcccccccchhhHHH
Q 001111 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNF-------LSDSKAFWRVRIEAAYALANTASEETDWAGLLH 730 (1154)
Q Consensus 658 ~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~-------l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~ 730 (1154)
-+.-+=++.=+-....++|++-|.....-. ..-..|.|+ ++| ..-.||+.|...|+++-....... +-
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~D--s~a~Vra~Al~Tlt~~L~~Vr~~~--~~ 499 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMD--SEADVRATALETLTELLALVRDIP--PS 499 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcC--chHHHHHHHHHHHHHHHhhccCCC--cc
Confidence 466677788888889999998888753211 111234443 566 477999999999997643211000 00
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHh--hcc--CCCCCCCchHHH
Q 001111 731 LVKFYKSRRFDENIGLPRPNDFRDF-SEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLL--KYN--DNNGNPYSDVFW 805 (1154)
Q Consensus 731 L~~~f~~~~~~~~~~ipk~NdFsd~-~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll--~~N--DNs~N~ysD~~y 805 (1154)
=.+.|.++- +| .=|.|.+- ..=.|+-++...||.+= .-|-+||.--- +-| +|.-|+=
T Consensus 500 daniF~eYl-fP-----~L~~l~~d~~~~~vRiayAsnla~LA-------~tA~rFle~~q~~~~~g~~n~~nse----- 561 (1431)
T KOG1240|consen 500 DANIFPEYL-FP-----HLNHLLNDSSAQIVRIAYASNLAQLA-------KTAYRFLELTQELRQAGMLNDPNSE----- 561 (1431)
T ss_pred cchhhHhhh-hh-----hhHhhhccCccceehhhHHhhHHHHH-------HHHHHHHHHHHHHHhcccccCcccc-----
Confidence 012333321 11 11111111 11124445545554442 23566654333 333 2333321
Q ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCC-chhhhhhhhccccCC
Q 001111 806 LAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI-SLDQVVKLIKPFRDF 884 (1154)
Q Consensus 806 ~a~li~aL~~~~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~-~~~~~~~~~~~y~~~ 884 (1154)
...+...+... .-+...+++..--|-.|. ..+|-.|-|+.|+.|+. +-|.. ..|-++..+-.|.+.
T Consensus 562 --t~~~~~~~~~~-----~~L~~~V~~~v~sLlsd~-----~~~Vkr~Lle~i~~LC~-FFGk~ksND~iLshLiTfLND 628 (1431)
T KOG1240|consen 562 --TAPEQNYNTEL-----QALHHTVEQMVSSLLSDS-----PPIVKRALLESIIPLCV-FFGKEKSNDVILSHLITFLND 628 (1431)
T ss_pred --cccccccchHH-----HHHHHHHHHHHHHHHcCC-----chHHHHHHHHHHHHHHH-HhhhcccccchHHHHHHHhcC
Confidence 11111111110 112223333333333342 27888888999998874 44555 445456666667764
Q ss_pred CCcHHHHHHHHHHhhccccccCC--chHHHHHHHHHhccCccchhhhhHHHHHhhhhhhccCCCCCCCCChHHHHHHHHH
Q 001111 885 NTIWQVRVEASRALLDLEFHCNG--IDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNL 962 (1154)
Q Consensus 885 ~~~~~vR~~A~~~l~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 962 (1154)
. -+.+|-+=|+.++-+....+. .++.|.=+|.-.-+|+..-+-.+.+.-+--+|. .+-|+.+.+++.+..
T Consensus 629 k-Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik-------~~ll~K~~v~~i~~~ 700 (1431)
T KOG1240|consen 629 K-DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK-------LGLLRKPAVKDILQD 700 (1431)
T ss_pred c-cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH-------hcccchHHHHHHHHh
Confidence 4 789999999999977543332 234444334334445442221111111111211 125777888887766
Q ss_pred HhccccccchhhHhhHHHHHHHhhc------CCccccCCCCC
Q 001111 963 LESRIAFNNVFLRHHLFGILQILAG------RAPTLYGVPRD 998 (1154)
Q Consensus 963 ~~~~~~~~~~~lr~~~~~~~~~l~~------~~~~l~g~~~~ 998 (1154)
..-=-++-|.-.|+.+.++|-..+. .|..|+-+=||
T Consensus 701 v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irp 742 (1431)
T KOG1240|consen 701 VLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRP 742 (1431)
T ss_pred hhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHH
Confidence 6554445688899999998876655 56666655555
No 49
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=45.08 E-value=30 Score=37.36 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHH
Q 001111 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (1154)
Q Consensus 346 ~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~ 388 (1154)
-.++|||+.|-|.-. ..-.--+.++-|||...++++|++..
T Consensus 94 gsiLAHE~mHa~Lrl--~g~~~L~~~vEEGiCqvla~~wL~~~ 134 (212)
T PF12315_consen 94 GSILAHELMHAWLRL--NGFPNLSPEVEEGICQVLAYLWLESE 134 (212)
T ss_pred hhHHHHHHHHHHhcc--cCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 347999999999622 22222367999999999999998753
No 50
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=45.08 E-value=36 Score=28.19 Aligned_cols=17 Identities=47% Similarity=0.432 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHccccc
Q 001111 705 WRVRIEAAYALANTASE 721 (1154)
Q Consensus 705 ~~VR~~Aa~aLa~~a~~ 721 (1154)
|+||..|+.+|+.++..
T Consensus 1 p~vR~~A~~aLg~l~~~ 17 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG 17 (55)
T ss_dssp HHHHHHHHHHHHCTTTT
T ss_pred CHHHHHHHHHHhhHhcc
Confidence 78999999999987643
No 51
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.68 E-value=4e+02 Score=35.84 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=45.5
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhCCCC-----c---hhHHHHHHHHhccCCchHHHHHHHHHHHHcccc
Q 001111 658 QMWINQLEKDGDVVAQAQAIAALEALPHL-----S---FNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1154)
Q Consensus 658 ~m~~~QL~~drDV~aQ~eAi~~L~~~~~~-----s---~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~ 720 (1154)
-.++.|=-++.|+--|.-|+.-|...|.. + ......|..++.|..- .||+.|++|++.++-
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~--~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSS--PVRVAAVRALGAFAE 188 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcc--hHHHHHHHHHHHHHH
Confidence 35667778899999999999998876421 1 1345567888988643 399999999998764
No 52
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=43.66 E-value=28 Score=35.59 Aligned_cols=15 Identities=13% Similarity=-0.064 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHhhcC
Q 001111 345 TSIKLSFALARQWFG 359 (1154)
Q Consensus 345 ~~~~IaHELAHQWFG 359 (1154)
...+|.|||||.|..
T Consensus 59 l~~~l~HEm~H~~~~ 73 (146)
T smart00731 59 LRETLLHELCHAALY 73 (146)
T ss_pred HHhhHHHHHHHHHHH
Confidence 345899999999975
No 53
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.99 E-value=7.7e+02 Score=33.32 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=49.7
Q ss_pred CCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCch--------hHHHHHHHHhccCCchHHHHHHHHHHHHccccc
Q 001111 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSF--------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (1154)
Q Consensus 655 qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~--------~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~ 721 (1154)
-|-+.|+.++-+..|..-|..|+.+|+-...++. .+..+....|.| .-=|||-+|+.|++++++.
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D--phprVr~AA~naigQ~std 419 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND--PHPRVRYAALNAIGQMSTD 419 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHhhhhh
Confidence 5788999999999999999999888875432322 244455666777 4679999999999999875
No 54
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=40.54 E-value=8.4e+02 Score=30.60 Aligned_cols=181 Identities=13% Similarity=0.093 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcccccccchhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHH
Q 001111 705 WRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVE 784 (1154)
Q Consensus 705 ~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~ 784 (1154)
+..|.-=-.||+.+.+.++ +..+.+..++.. .+ .--....+-.+++.++. ..+++.+
T Consensus 340 ~~~r~~~~Dal~~~GT~~a----~~~i~~~i~~~~------------~~---~~ea~~~~~~~~~~~~~----Pt~~~l~ 396 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPA----LKFIKQWIKNKK------------IT---PLEAAQLLAVLPHTARY----PTEEILK 396 (574)
T ss_pred HHHHHHHHHHHHhcCCHHH----HHHHHHHHHcCC------------CC---HHHHHHHHHHHHHhhhc----CCHHHHH
Confidence 3444444556666666543 666666666422 11 11234455555666653 3577888
Q ss_pred HHHHHhhccCCCCCCCchHHHHHHHHHHhhcccc--cccc--------HHHHHHHHHHHHHHhhcccccCCCCcHhHHHH
Q 001111 785 FVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF--GQQS--------ILFLSSLLKRIDRLLQFDRLMPSYNGILTISC 854 (1154)
Q Consensus 785 fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~--~~~~--------~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~ 854 (1154)
-|++|++.- +.-+..+-..+.+-|+|++.- +... ..+...+.+++.....- -. .-..+.+
T Consensus 397 ~l~~l~~~~----~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~---~~~~~~~ 466 (574)
T smart00638 397 ALFELAESP----EVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK---GD---EEEIQLY 466 (574)
T ss_pred HHHHHhcCc----cccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc---CC---chheeeH
Confidence 888888732 223334566666777776421 1111 12333344444433310 11 1124568
Q ss_pred HHHHHHHHHHhcCCCchhhhhhhhcccc--CCCCcHHHHHHHHHHhhccccccCCchHHHHHHHHHhcc---Cccchhh
Q 001111 855 IRTLTQIALKLSGFISLDQVVKLIKPFR--DFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEE---EPSLRGQ 928 (1154)
Q Consensus 855 l~~l~~l~~~~~~~~~~~~~~~~~~~y~--~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~ 928 (1154)
|++|.++ |+...-. .+.+|. +...+..+|++|+.+|-.+..... +.+-..++.+... ++.+|..
T Consensus 467 LkaLGN~-----g~~~~i~---~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--~~v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 467 LKALGNA-----GHPSSIK---VLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--RKVQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred HHhhhcc-----CChhHHH---HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHcCCCCChHHHHH
Confidence 8888775 3332221 223333 344578999999999987654333 3445556655533 4556653
No 55
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=37.51 E-value=76 Score=33.95 Aligned_cols=68 Identities=10% Similarity=0.133 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCc----eeeeeccccccCcccchhhhhhHHHHHHHHH
Q 001111 279 HNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDEKVIDQAIDTSIKLSFALA 354 (1154)
Q Consensus 279 ~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~ga----gLii~s~~LL~~~~~~d~~~~~~~~IaHELA 354 (1154)
+.+...+...++.|++.+|.++ ++ |.|- .| ..-||. |.++++..|+.-|.. -...+|+||||
T Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~--~~---i~ir-~~---ksrWGsc~~~~~I~ln~~L~~~P~~-----~idYVvvHEL~ 173 (205)
T PF01863_consen 108 KQAKEYLPERLKKYAKKLGLPP--PK---IKIR-DM---KSRWGSCSSKGNITLNWRLVMAPPE-----VIDYVVVHELC 173 (205)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc--ce---EEEe-eh---hhccccCCCCCcEEeecccccCCcc-----HHHHHHHHHHH
Confidence 3456778888899999998643 33 3332 12 123543 456666665543321 13458999999
Q ss_pred HhhcCC
Q 001111 355 RQWFGV 360 (1154)
Q Consensus 355 HQWFGn 360 (1154)
|-..-|
T Consensus 174 Hl~~~n 179 (205)
T PF01863_consen 174 HLRHPN 179 (205)
T ss_pred HhccCC
Confidence 987654
No 56
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=36.90 E-value=74 Score=32.55 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHhhcCCc
Q 001111 344 DTSIKLSFALARQWFGVY 361 (1154)
Q Consensus 344 ~~~~~IaHELAHQWFGnl 361 (1154)
....+|.|||+|.|....
T Consensus 59 ~~~~tL~HEm~H~~~~~~ 76 (157)
T PF10263_consen 59 ELIDTLLHEMAHAAAYVF 76 (157)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 445689999999997433
No 57
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=35.73 E-value=63 Score=29.58 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCCCCCccEEEeCCCccccccccCceeeeeccccccCcccchh-hhhhHHHHHHHHHHhh
Q 001111 288 AFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQ-AIDTSIKLSFALARQW 357 (1154)
Q Consensus 288 al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~s~~LL~~~~~~d~-~~~~~~~IaHELAHQW 357 (1154)
+...+|..||.+ |+...+-.=+.. .......+|--.+..+.+.+.+....+ .-....+++|||+|=|
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a-~~~~~~~~A~A~T~G~~I~f~~g~~~~~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAA-SRAAAALGARAFTVGNDIYFAPGKYNPDSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCch-hhhhhccCCeEEEECCEEEEcCCCcCCCCCCcchhHhHHHHHHH
Confidence 446678899854 665554322210 011123344334556666664433211 1234568999999964
No 58
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.03 E-value=1.7e+02 Score=36.93 Aligned_cols=157 Identities=22% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhh--HHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 001111 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAG--LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHA 767 (1154)
Q Consensus 690 ~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g--~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~a 767 (1154)
+|.|+.--|+|| ||.||.+|..+|.+.+...+.+.- +..|+.+|..-.-+ |+---..|
T Consensus 374 ACGA~VhGlEDE--f~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~------------------VRL~ai~a 433 (823)
T KOG2259|consen 374 ACGALVHGLEDE--FYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEV------------------VRLKAIFA 433 (823)
T ss_pred ccceeeeechHH--HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHH------------------HHHHHHHH
Q ss_pred HhhhhccCCC--------------ChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhcc----------------c
Q 001111 768 VAMVRAADNK--------------SPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL----------------E 817 (1154)
Q Consensus 768 la~vr~~~g~--------------~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~----------------~ 817 (1154)
|-.|-+.--. +..+|++-|.+||+ .-.|+|---+--++..|... .
T Consensus 434 L~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~-----~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~ 508 (823)
T KOG2259|consen 434 LTMISVHLAIREEQLRQILESLEDRSVDVREALRELLK-----NARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGR 508 (823)
T ss_pred HHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHH-----hcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHH
Q ss_pred cccccHHHHHHHHHHHH-HHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCch
Q 001111 818 FGQQSILFLSSLLKRID-RLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL 871 (1154)
Q Consensus 818 ~~~~~~~~~~~~~~ei~-r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~ 871 (1154)
+++....+...+..-+- .......--||...--.++-|..+.+++...-|.+.+
T Consensus 509 iGqnH~~lv~s~m~rfl~kh~~f~t~e~s~ed~~y~akLilv~nAa~~~p~ii~s 563 (823)
T KOG2259|consen 509 IGQNHRRLVLSNMGRFLEKHTSFATIEPSLEDGFYIAKLILVRNAARADPGIIVS 563 (823)
T ss_pred HhccChhhHHHHHHHHHHhcccccccCccccChhhhhhhhhhhhhhhhCCCeeee
No 59
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=31.37 E-value=3.5e+02 Score=30.97 Aligned_cols=90 Identities=20% Similarity=0.271 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHhhccccc-------cC-------CchHHHHHHHHHhccC-ccchhhhhHHHHHhhhhhhccCCCCCCCC
Q 001111 887 IWQVRVEASRALLDLEFH-------CN-------GIDSALSLFIKSVEEE-PSLRGQVKLGIHAMRICQIKGGSDSNHEV 951 (1154)
Q Consensus 887 ~~~vR~~A~~~l~~~~~~-------~~-------~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 951 (1154)
...||+.|+++|+|+... .. +....++.|.+.+.++ |.++. +..+.+.=.-. ..++
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~---~a~EGl~KLlL------~~~i 147 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQA---IAVEGLCKLLL------SGRI 147 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHH---HHHHHHHHHHh------cCCC
Confidence 789999999999997432 11 1125677888888776 33222 11111111112 2266
Q ss_pred Ch-HHHHHHH-HHHhccccccchhhHhhHHHHHHHh
Q 001111 952 DT-VTLVALL-NLLESRIAFNNVFLRHHLFGILQIL 985 (1154)
Q Consensus 952 ~~-~~l~~~~-~~~~~~~~~~~~~lr~~~~~~~~~l 985 (1154)
.. ++++..| -+.-+-.+.+|.+||..+--++...
T Consensus 148 ~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 148 SDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred CcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 66 7777744 3333444456789998776665443
No 60
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=31.26 E-value=7.9e+02 Score=30.96 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=32.8
Q ss_pred HHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccch
Q 001111 678 AALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW 725 (1154)
Q Consensus 678 ~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~ 725 (1154)
++++.+|+.+..+.+++.+..+|+. -.||++|.+.|..+......|
T Consensus 48 kffk~FP~l~~~Ai~a~~DLcEDed--~~iR~~aik~lp~~ck~~~~~ 93 (556)
T PF05918_consen 48 KFFKHFPDLQEEAINAQLDLCEDED--VQIRKQAIKGLPQLCKDNPEH 93 (556)
T ss_dssp HHHCC-GGGHHHHHHHHHHHHT-SS--HHHHHHHHHHGGGG--T--T-
T ss_pred HHHhhChhhHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHhHHHH
Confidence 5677788888889999999999986 579999999999877554434
No 61
>PTZ00429 beta-adaptin; Provisional
Probab=30.65 E-value=1.4e+03 Score=30.10 Aligned_cols=248 Identities=15% Similarity=0.149 Sum_probs=121.5
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhC----CCC--chhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHH
Q 001111 658 QMWINQLEKDGDVVAQAQAIAALEAL----PHL--SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHL 731 (1154)
Q Consensus 658 ~m~~~QL~~drDV~aQ~eAi~~L~~~----~~~--s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L 731 (1154)
..-+.+.-.|++-.-|--|+-++.+. |.. .......|.+.|.|+ -..|..-|..+|-.+...... ++...
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~~~~--~l~l~ 217 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDYGSE--KIESS 217 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHhCch--hhHHH
Confidence 34456667899999999888777763 221 112346788877774 678999999999988654322 23333
Q ss_pred HHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHH
Q 001111 732 VKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQ 811 (1154)
Q Consensus 732 ~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~ 811 (1154)
.+.+... |. .+ ++|+...+.++.+.+ +.-+-.+..--.++...++..|+++ |+ -.+=+.++
T Consensus 218 ~~~~~~L-l~---~L---~e~~EW~Qi~IL~lL----~~y~P~~~~e~~~il~~l~~~Lq~~----N~----AVVl~Aik 278 (746)
T PTZ00429 218 NEWVNRL-VY---HL---PECNEWGQLYILELL----AAQRPSDKESAETLLTRVLPRMSHQ----NP----AVVMGAIK 278 (746)
T ss_pred HHHHHHH-HH---Hh---hcCChHHHHHHHHHH----HhcCCCCcHHHHHHHHHHHHHhcCC----CH----HHHHHHHH
Confidence 3444432 21 13 344555555555544 4433222222234555555555532 31 12223333
Q ss_pred HhhccccccccHHHHHHHHHHHHH-HhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHH
Q 001111 812 SVGELEFGQQSILFLSSLLKRIDR-LLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQV 890 (1154)
Q Consensus 812 aL~~~~~~~~~~~~~~~~~~ei~r-~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~v 890 (1154)
++-.+.... +......+++-+.. ++.+ .-| .+-+--.+|+.|..+..+.-..+.. .+..+|..|. -+..|
T Consensus 279 ~il~l~~~~-~~~~~~~~~~rl~~pLv~L---~ss-~~eiqyvaLr~I~~i~~~~P~lf~~-~~~~Ff~~~~---Dp~yI 349 (746)
T PTZ00429 279 VVANLASRC-SQELIERCTVRVNTALLTL---SRR-DAETQYIVCKNIHALLVIFPNLLRT-NLDSFYVRYS---DPPFV 349 (746)
T ss_pred HHHHhcCcC-CHHHHHHHHHHHHHHHHHh---hCC-CccHHHHHHHHHHHHHHHCHHHHHH-HHHhhhcccC---CcHHH
Confidence 333222111 11233333333322 2233 222 2334455666665554322222211 2322333333 34669
Q ss_pred HHHHHHHhhccccccCCchHHHHHHHHHh-ccCccchhhhhHHHHHhhhhhh
Q 001111 891 RVEASRALLDLEFHCNGIDSALSLFIKSV-EEEPSLRGQVKLGIHAMRICQI 941 (1154)
Q Consensus 891 R~~A~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 941 (1154)
|..+++.|+.+.- ......+|+=+.+++ +.|+.++.+ .+.++..|+.
T Consensus 350 K~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~---aIrAIg~lA~ 397 (746)
T PTZ00429 350 KLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVE---VVRAIASLAI 397 (746)
T ss_pred HHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHH---HHHHHHHHHH
Confidence 9999999999853 333344555444444 334544432 3344455554
No 62
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.45 E-value=1.2e+02 Score=35.59 Aligned_cols=125 Identities=26% Similarity=0.289 Sum_probs=71.0
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHHcccccc------cchhhHHHHHHHHHh---------ccCCCCCCCCCCCCCC
Q 001111 689 NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE------TDWAGLLHLVKFYKS---------RRFDENIGLPRPNDFR 753 (1154)
Q Consensus 689 ~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~------~~~~g~~~L~~~f~~---------~~~~~~~~ipk~NdFs 753 (1154)
..+.+|...+.| .--+|.|+|+.||...+++. +...|+++|++..++ .+|..+..|---|.--
T Consensus 251 ~lv~~Lv~Lmd~--~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l 328 (550)
T KOG4224|consen 251 KLVPALVDLMDD--GSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL 328 (550)
T ss_pred chHHHHHHHHhC--CChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc
Confidence 356677666555 46799999999999998753 233468999887775 3565433221111110
Q ss_pred ----ChHHHHHH--------HHHHHHHhhhhccCCC-----------------------ChHHHHH---HHHHHhhccCC
Q 001111 754 ----DFSEYFVL--------EAIPHAVAMVRAADNK-----------------------SPREAVE---FVLQLLKYNDN 795 (1154)
Q Consensus 754 ----d~~~Yfvq--------kaip~ala~vr~~~g~-----------------------~p~~v~~---fLldll~~NDN 795 (1154)
-|-.=+|+ ++=.+|.+.+|+.-|. .|.+++. --+-+|.||||
T Consensus 329 I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 00000110 0112344444443221 1333332 23567899999
Q ss_pred CCCCCchHHHHHHHHHHhhc
Q 001111 796 NGNPYSDVFWLAALVQSVGE 815 (1154)
Q Consensus 796 s~N~ysD~~y~a~li~aL~~ 815 (1154)
++..++|.--+-.||.=++.
T Consensus 409 ~k~~lld~gi~~iLIp~t~s 428 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGS 428 (550)
T ss_pred cHHHHhhcCCcceeecccCc
Confidence 99999998877777765553
No 63
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=29.82 E-value=1.7e+02 Score=32.93 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH
Q 001111 757 EYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRL 836 (1154)
Q Consensus 757 ~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~~~~~~~~~~~~~~ei~r~ 836 (1154)
.=|++.+...|+..+-..+-....+|.+++-+++.++=+.+.+| -...||.++.++. ...++.+|.+.
T Consensus 126 ~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~----~~~~Lv~~~~dL~--------~~EL~~~I~~~ 193 (249)
T PF06685_consen 126 DEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSF----LWGSLVADICDLY--------PEELLPEIRKA 193 (249)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchH----HHHHHHHHHHhcC--------HHHhHHHHHHH
Confidence 34688999999999887777889999999999998766555444 5567777666653 35677888877
Q ss_pred hhcccccCCC
Q 001111 837 LQFDRLMPSY 846 (1154)
Q Consensus 837 ~~~D~~~pSy 846 (1154)
-..+-+-|++
T Consensus 194 f~~~lVd~~~ 203 (249)
T PF06685_consen 194 FEDGLVDPSF 203 (249)
T ss_pred HHcCCCCccc
Confidence 7766555544
No 64
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.73 E-value=9.2e+02 Score=31.21 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=67.8
Q ss_pred cccCCCCcHhHH--HHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccCCchHHHHHHHHH
Q 001111 841 RLMPSYNGILTI--SCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKS 918 (1154)
Q Consensus 841 ~~~pSy~~vvt~--~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~ 918 (1154)
..+-+|+..+.+ .=|+++.+|+..- -+..+..-+..|+..-...-|| +|++|+=+++.....-...+..||+.
T Consensus 320 ~Ff~kynDPiYvK~eKleil~~la~~~----nl~qvl~El~eYatevD~~fvr-kaIraig~~aik~e~~~~cv~~lLel 394 (734)
T KOG1061|consen 320 VFFCKYNDPIYVKLEKLEILIELANDA----NLAQVLAELKEYATEVDVDFVR-KAVRAIGRLAIKAEQSNDCVSILLEL 394 (734)
T ss_pred eeeeecCCchhhHHHHHHHHHHHhhHh----HHHHHHHHHHHhhhhhCHHHHH-HHHHHhhhhhhhhhhhhhhHHHHHHH
Confidence 456778877775 3444555554211 0222333345566654444444 68999988865443224578899999
Q ss_pred hccCc--cchhhhhHHHHHhhhhhhc------cCCCCCCCCChHHHHH-HHHHH
Q 001111 919 VEEEP--SLRGQVKLGIHAMRICQIK------GGSDSNHEVDTVTLVA-LLNLL 963 (1154)
Q Consensus 919 ~~~~~--~~~~~~~l~~~~~~~~~~~------~~~~~~~~l~~~~l~~-~~~~~ 963 (1154)
++..- .......+...++|-++-. .-..+-..|+.|+-+. ++|++
T Consensus 395 l~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWil 448 (734)
T KOG1061|consen 395 LETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWIL 448 (734)
T ss_pred HhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHH
Confidence 98642 2333344555666655421 2233445788888777 77777
No 65
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.62 E-value=8.6e+02 Score=28.32 Aligned_cols=136 Identities=19% Similarity=0.211 Sum_probs=69.3
Q ss_pred hCCCcHHHHHHHHHHHhCC--------CCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccc-cchhhHHHHHHHHH
Q 001111 666 KDGDVVAQAQAIAALEALP--------HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-TDWAGLLHLVKFYK 736 (1154)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~--------~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~-~~~~g~~~L~~~f~ 736 (1154)
++..---|..|++.|-.+- ..+......|...+++... --.||.||.+.+-.. ..-.=+..|+|.--
T Consensus 13 ~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ll~~~~k~l~ 88 (353)
T KOG2973|consen 13 HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKKLLQDLLKVLM 88 (353)
T ss_pred ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4444455667776555431 1245566677778888765 457888888877543 11111122222221
Q ss_pred hccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccC-----CC-ChHHHHHHHHHHh-hccCCCCCCCchHHHHHHH
Q 001111 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD-----NK-SPREAVEFVLQLL-KYNDNNGNPYSDVFWLAAL 809 (1154)
Q Consensus 737 ~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~-----g~-~p~~v~~fLldll-~~NDNs~N~ysD~~y~a~l 809 (1154)
..-.+|.+++-+ +-+.+..++++.++.- .. -+.+ .-|.++. ++-|-+.|.|.-=.|+|.+
T Consensus 89 ~~~~~p~~~lad-----------~~cmlL~NLs~~~~~~~~ll~~~~~~~~--~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 89 DMLTDPQSPLAD-----------LICMLLSNLSRDDDEVAALLTNLTEKKD--SGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHhcCcccchHH-----------HHHHHHHHhccCchHHHHHHHhcccccc--cchHHHHHHHhCcccccccchhHHHHH
Confidence 122233322211 2233333333332210 00 0111 2234444 4567888988888899999
Q ss_pred HHHhhcccc
Q 001111 810 VQSVGELEF 818 (1154)
Q Consensus 810 i~aL~~~~~ 818 (1154)
...|+...-
T Consensus 156 f~nls~~~~ 164 (353)
T KOG2973|consen 156 FANLSQFEA 164 (353)
T ss_pred HHHHhhhhh
Confidence 999987544
No 66
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.10 E-value=1.2e+03 Score=31.81 Aligned_cols=138 Identities=17% Similarity=0.224 Sum_probs=78.3
Q ss_pred cccCCCCcHhH------HHHHHHHHHHHH-HhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccc----cccCCch
Q 001111 841 RLMPSYNGILT------ISCIRTLTQIAL-KLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLE----FHCNGID 909 (1154)
Q Consensus 841 ~~~pSy~~vvt------~~~l~~l~~l~~-~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~----~~~~~~~ 909 (1154)
.+.+|.|.+.+ ..||+.|.++.- ...+.++.. +-+++..+. ..-..-|..||+||+-++ .+..|.+
T Consensus 701 ~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~-I~EvIL~~K--e~n~~aR~~Af~lL~~i~~i~~~~d~g~e 777 (1176)
T KOG1248|consen 701 SLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL-IPEVILSLK--EVNVKARRNAFALLVFIGAIQSSLDDGNE 777 (1176)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHhcc--cccHHHHhhHHHHHHHHHHHHhhhccccc
Confidence 34566666665 357777666521 111233322 223344442 334678999999999987 2334422
Q ss_pred ---HHHHHHHHHhccC---ccchhhhhHHHHHhhhhhhccCCCCCCCCChHHHHHHHHHHhccccccchhhHhhHHHHHH
Q 001111 910 ---SALSLFIKSVEEE---PSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQ 983 (1154)
Q Consensus 910 ---~~l~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~lr~~~~~~~~ 983 (1154)
++|+=|+..+..- .+.+....- +.++....+. ..+-+|+++|..++.....-.+++....|..+++++-
T Consensus 778 ~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e----~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fik 852 (1176)
T KOG1248|consen 778 PASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQE----FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIK 852 (1176)
T ss_pred chHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHH----HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4677666665332 222222110 1222222222 2347888999888888777777788888888888876
Q ss_pred Hhh
Q 001111 984 ILA 986 (1154)
Q Consensus 984 ~l~ 986 (1154)
++-
T Consensus 853 vlv 855 (1176)
T KOG1248|consen 853 VLV 855 (1176)
T ss_pred HHH
Confidence 654
No 67
>PRK04860 hypothetical protein; Provisional
Probab=29.08 E-value=1.1e+02 Score=32.07 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCceeeee-ccccccCcccch--hhhhhHHHHHHHHHHhh
Q 001111 283 EFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVID--QAIDTSIKLSFALARQW 357 (1154)
Q Consensus 283 ~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~-s~~LL~~~~~~d--~~~~~~~~IaHELAHQW 357 (1154)
..+...+..-+++||.+||-+... |-.- + -+ ||...+ +..+=+++.... .......+|+|||||-|
T Consensus 7 ~~~~~~~~~a~~~f~~~f~~p~~~--f~~R---~--rt--aG~~~l~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 7 RRLRECLAQANLYFKRTFPEPKVS--YTQR---G--TS--AGTAWLQSNEIRLNPVLLLENQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEE--Eeec---c--hh--hcchhHhcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHH
Confidence 444555566677888777765432 2211 1 11 232222 222333333321 11223458999999987
No 68
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=28.07 E-value=26 Score=42.01 Aligned_cols=70 Identities=29% Similarity=0.325 Sum_probs=47.7
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhH----HHHHHHHHhccCCCCCCCCCCCCCCChHHHH----HH
Q 001111 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGL----LHLVKFYKSRRFDENIGLPRPNDFRDFSEYF----VL 761 (1154)
Q Consensus 690 ~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~----~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yf----vq 761 (1154)
+-++|+..+.|. .=++||+.||-||+.-+..+....-+ ..|+.+ +.+.|+|-+|.+|- ++
T Consensus 574 ~F~~L~~Lv~~~-~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~a-----------Li~s~~~v~f~eY~~~Dsl~ 641 (728)
T KOG4535|consen 574 AFNALTSLVTSC-KNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTA-----------LQKSEDTIDFLEYKYCDSLR 641 (728)
T ss_pred HHHHHHHHHHHh-ccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 445676666664 45799999999999998876433222 233333 34688999999986 46
Q ss_pred HHHHHHHhhh
Q 001111 762 EAIPHAVAMV 771 (1154)
Q Consensus 762 kaip~ala~v 771 (1154)
+.||.|+..+
T Consensus 642 ~q~c~av~hl 651 (728)
T KOG4535|consen 642 TQICQALIHL 651 (728)
T ss_pred HHHHHHHHHH
Confidence 6777777644
No 69
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.62 E-value=1e+03 Score=31.47 Aligned_cols=243 Identities=19% Similarity=0.200 Sum_probs=125.0
Q ss_pred CCceEEEEcCCCcEEE---EEecCCCHHHHHHHHhh----CCCcHHHHHH------HHHHHhCCCCchhHHHHHHH----
Q 001111 634 SPLSWIRADPEMEYLA---EIHFNQPVQMWINQLEK----DGDVVAQAQA------IAALEALPHLSFNVVNTLNN---- 696 (1154)
Q Consensus 634 ~p~~WIRiDpd~ewl~---~v~~~qp~~m~~~QL~~----drDV~aQ~eA------i~~L~~~~~~s~~~~~~L~~---- 696 (1154)
...+-+++++|-|.=+ .-++++|.+.-+.||-+ .+|+..|++- +..++..-+.+.+-.+.|.+
T Consensus 627 ~t~e~v~~t~d~evee~~e~~~i~~~~~~~Vlml~qttl~~~d~~i~l~e~~~~~a~~~~eQ~~n~~t~e~~~Ll~~~I~ 706 (982)
T KOG4653|consen 627 HTKELVHITKDLEVEESREQEEIDQPILLLVLMLLQTTLEMGDEEIQLEEAPIAAAKPLKEQLFNLGTREINPLLQQSID 706 (982)
T ss_pred hhHHHHhcCCchhhhhhhhhhhcchHHHHHHHHHHHHHHhcCccccccccchhhhccchHHHHhhccccccchHHhccch
Confidence 4466777877777655 34667787777777754 3777777753 11111110111111122322
Q ss_pred -Hhcc-------CCchHHHHHHHH-HHHHcccccc--cchhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHH
Q 001111 697 -FLSD-------SKAFWRVRIEAA-YALANTASEE--TDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIP 765 (1154)
Q Consensus 697 -~l~d-------~~~F~~VR~~Aa-~aLa~~a~~~--~~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip 765 (1154)
.+-+ +| =|-|-++-. +|+...-.+. ..-.|+.-|.+.+++|.-.+ + -+-++-+-
T Consensus 707 ~~lvn~ptt~rsd~-~~s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~-----~---------~~~ekvl~ 771 (982)
T KOG4653|consen 707 SLLVNIPTTRRSDR-RYSVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKAT-----L---------IQGEKVLA 771 (982)
T ss_pred hhhccCCCCccccc-cccccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhh-----h---------hhHHHHHH
Confidence 1111 11 233333211 2233322222 12347888888888763111 1 12345555
Q ss_pred HHHhhhhccCCCChHHHHH------------HHHHHhhccCCCCCCC--chHHH----HHHHHHHhhccccccccHHHHH
Q 001111 766 HAVAMVRAADNKSPREAVE------------FVLQLLKYNDNNGNPY--SDVFW----LAALVQSVGELEFGQQSILFLS 827 (1154)
Q Consensus 766 ~ala~vr~~~g~~p~~v~~------------fLldll~~NDNs~N~y--sD~~y----~a~li~aL~~~~~~~~~~~~~~ 827 (1154)
.++-.++|.|......|++ .|=+++.|=+|++|.- ++--- +-.++.|+|++.. .+.+
T Consensus 772 i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~-----~y~~ 846 (982)
T KOG4653|consen 772 IALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF-----KYKA 846 (982)
T ss_pred HHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH-----HHHH
Confidence 6778889988877666666 4455666666777666 32222 2234455555433 1222
Q ss_pred HHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchh--hhhhhhccccCCCCcHHHHHHHHHHhhccc
Q 001111 828 SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLD--QVVKLIKPFRDFNTIWQVRVEASRALLDLE 902 (1154)
Q Consensus 828 ~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~--~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~ 902 (1154)
.++ +-+++.=+ -| -+.+-.+.+..+.+|.+..++..+.. +++..+..-...+....||.+|...+.++-
T Consensus 847 ~Li---~tfl~gvr-ep--d~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 847 VLI---NTFLSGVR-EP--DHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred HHH---HHHHHhcC-Cc--hHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 222 33333322 33 55555555555555554455555432 223333344556778899999999988873
No 70
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=25.48 E-value=1.8e+02 Score=33.93 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHHHhhhh
Q 001111 347 IKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAV 405 (1154)
Q Consensus 347 ~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~~~~~~ 405 (1154)
.++|||+|||= | -..|+=|+|++++...+. .+..+||-.+...-.+
T Consensus 198 ~T~~HElAHq~-G-----------~a~E~EANFiayLac~~s-~d~~frYSgy~~~l~y 243 (318)
T PF12725_consen 198 FTICHELAHQL-G-----------FASEDEANFIAYLACINS-PDPYFRYSGYLFALRY 243 (318)
T ss_pred HHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhcC-CChheeHHHHHHHHHH
Confidence 37999999994 2 237888999998887553 3444566555443333
No 71
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=25.32 E-value=1e+03 Score=26.83 Aligned_cols=64 Identities=28% Similarity=0.320 Sum_probs=45.1
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCCCchh--------HHHHHHHHhccCCchHHHHHHHHHHHHcccccc
Q 001111 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFN--------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEE 722 (1154)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~--------~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~ 722 (1154)
-.+.+.-|+..+|..-|-.|.-++......+.. ....+...|.+ ..-.||..|..||...+...
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~--p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND--PNPSVREKALNALNNLSVND 85 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC--CChHHHHHHHHHHHhcCCCh
Confidence 346677788888999999988888865322211 22345556655 47799999999999887653
No 72
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.05 E-value=1.7e+03 Score=29.85 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHHHHHHHHH-HhhcccccCCCCcHhHH-HHHHHHHHHHHHhcCCCchhhh-hhhhccccC---CCCcHHHHHHHHHHhh
Q 001111 826 LSSLLKRIDR-LLQFDRLMPSYNGILTI-SCIRTLTQIALKLSGFISLDQV-VKLIKPFRD---FNTIWQVRVEASRALL 899 (1154)
Q Consensus 826 ~~~~~~ei~r-~~~~D~~~pSy~~vvt~-~~l~~l~~l~~~~~~~~~~~~~-~~~~~~y~~---~~~~~~vR~~A~~~l~ 899 (1154)
+.+++.=+.. +.+.++=.|+=.|.--. +||..+..|+..+...=|.... ..++..|-- .+++--+|..|-+-|=
T Consensus 408 l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 408 LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 3444443332 33345555666665554 8899888887555444454332 222222222 2334567777777665
Q ss_pred ccc-cccC--C-chHHHHHHHHHhccCccchhh
Q 001111 900 DLE-FHCN--G-IDSALSLFIKSVEEEPSLRGQ 928 (1154)
Q Consensus 900 ~~~-~~~~--~-~~~~l~~~~~~~~~~~~~~~~ 928 (1154)
.+. ...+ + +..|++...+.+.+|...-.+
T Consensus 488 ~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~ 520 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNLSEALELTHNCLLNDNELPVR 520 (1010)
T ss_pred HHHhccCCChHHHHHHHHHHHHHhccCCcCchh
Confidence 554 2222 1 126788888888877664444
No 73
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.44 E-value=1.4e+03 Score=30.01 Aligned_cols=184 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcccccccchhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHH
Q 001111 705 WRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVE 784 (1154)
Q Consensus 705 ~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~ 784 (1154)
+-|.+-=...|...+++.+ ...+++-|+. -.++-||+ +--+-++||+++=...|.-+.-+..
T Consensus 371 ~~vk~lKleiLs~La~esn----i~~ILrE~q~--------YI~s~d~~------faa~aV~AiGrCA~~~~sv~~tCL~ 432 (968)
T KOG1060|consen 371 TQVKILKLEILSNLANESN----ISEILRELQT--------YIKSSDRS------FAAAAVKAIGRCASRIGSVTDTCLN 432 (968)
T ss_pred HHHHHHHHHHHHHHhhhcc----HHHHHHHHHH--------HHhcCchh------HHHHHHHHHHHHHHhhCchhhHHHH
Q ss_pred HHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHhhcccc------------cCCCCcHhHH
Q 001111 785 FVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRL------------MPSYNGILTI 852 (1154)
Q Consensus 785 fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~~~~~~~~~~~~~~ei~r~~~~D~~------------~pSy~~vvt~ 852 (1154)
-|++||+ |. |...+++.+..+-.+...+... -.++|..+.|.+ |.. +.-|.-+|-.
T Consensus 433 gLv~Lls---sh-----de~Vv~eaV~vIk~Llq~~p~~--h~~ii~~La~ll--dti~vp~ARA~IiWLige~~e~vpr 500 (968)
T KOG1060|consen 433 GLVQLLS---SH-----DELVVAEAVVVIKRLLQKDPAE--HLEILFQLARLL--DTILVPAARAGIIWLIGEYCEIVPR 500 (968)
T ss_pred HHHHHHh---cc-----cchhHHHHHHHHHHHHhhChHH--HHHHHHHHHHHh--hhhhhhhhhceeeeeehhhhhhcch
Q ss_pred HHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhcc-ccccCCchHHHHHHHHHhccCcc--chhhh
Q 001111 853 SCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDL-EFHCNGIDSALSLFIKSVEEEPS--LRGQV 929 (1154)
Q Consensus 853 ~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~--~~~~~ 929 (1154)
=|=..|++++ +.|++.+ ..|++..+..-+.| ....++.+-+.+|.+...+.||+ +|.+.
T Consensus 501 i~PDVLR~la----------------ksFs~E~--~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRa 562 (968)
T KOG1060|consen 501 IAPDVLRKLA----------------KSFSDEG--DEVKLQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRA 562 (968)
T ss_pred hchHHHHHHH----------------Hhhcccc--chhhHHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHH
Q ss_pred hHHHHHh
Q 001111 930 KLGIHAM 936 (1154)
Q Consensus 930 ~l~~~~~ 936 (1154)
+.....+
T Consensus 563 RF~r~l~ 569 (968)
T KOG1060|consen 563 RFLRQLI 569 (968)
T ss_pred HHHHHHh
No 74
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=20.98 E-value=1.6e+02 Score=28.10 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHhhccccccCCchHHHHHHHHHh------ccCccchhh
Q 001111 886 TIWQVRVEASRALLDLEFHCNGIDSALSLFIKSV------EEEPSLRGQ 928 (1154)
Q Consensus 886 ~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~ 928 (1154)
.-..||..|.|+|..+....+ +.+|.+|-+.. ..||..+.+
T Consensus 39 ~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr 85 (97)
T PF12755_consen 39 QDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVR 85 (97)
T ss_pred CcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHH
Confidence 447899999999999977666 35666655543 346655543
No 75
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=20.01 E-value=3.7e+02 Score=27.80 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001111 276 SKIHNTVEFFHNAFSHYETYLDAKFPFG 303 (1154)
Q Consensus 276 ~~~~~t~~~~~~al~ffee~fG~~YPf~ 303 (1154)
..+..+...+..+.+||.++|| .=++.
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD 93 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSID 93 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STT
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcC
Confidence 4455677788999999999999 55665
Done!