Query 001111
Match_columns 1154
No_of_seqs 404 out of 2117
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b34_A Aminopeptidase N; prote 100.0 1.1E-71 3.7E-76 706.6 65.6 546 13-682 33-594 (891)
2 3ebh_A PFA-M1, M1 family amino 100.0 1.6E-71 5.6E-76 700.7 59.4 541 14-682 9-578 (889)
3 3se6_A Endoplasmic reticulum a 100.0 4.5E-69 1.5E-73 690.3 57.3 601 12-717 66-705 (967)
4 2xdt_A Endoplasmic reticulum a 100.0 9.8E-69 3.4E-73 687.0 53.9 547 11-674 5-592 (897)
5 2gtq_A Aminopeptidase N; alani 100.0 3.8E-68 1.3E-72 675.9 55.6 570 16-713 13-613 (867)
6 4fke_A Aminopeptidase N; zinc 100.0 2.5E-67 8.5E-72 675.4 58.5 545 12-669 8-587 (909)
7 1z5h_A Tricorn protease intera 100.0 1E-67 3.4E-72 668.7 42.5 543 19-718 1-555 (780)
8 3u9w_A Leukotriene A-4 hydrola 100.0 2.9E-67 9.9E-72 648.5 31.0 452 17-533 12-473 (608)
9 3cia_A Cold-active aminopeptid 100.0 1.8E-61 6.1E-66 596.6 37.1 430 14-519 21-464 (605)
10 2xq0_A LTA-4 hydrolase, leukot 100.0 1.1E-61 3.7E-66 600.5 34.4 430 15-518 24-466 (632)
11 4fgm_A Aminopeptidase N family 99.9 9.1E-22 3.1E-26 240.8 19.4 315 187-514 109-452 (597)
12 3ltm_A Alpha-REP4; protein eng 96.9 0.0066 2.3E-07 63.4 13.3 183 657-903 21-203 (211)
13 3ltj_A Alpharep-4; protein eng 96.2 0.041 1.4E-06 56.8 13.5 120 658-817 16-135 (201)
14 1oyz_A Hypothetical protein YI 95.9 0.37 1.3E-05 52.3 19.6 213 658-927 26-239 (280)
15 1te4_A Conserved protein MTH18 95.5 0.013 4.5E-07 56.7 5.3 122 653-815 9-130 (131)
16 1oyz_A Hypothetical protein YI 95.2 0.17 5.9E-06 54.9 13.9 202 660-923 58-265 (280)
17 3rjo_A Endoplasmic reticulum a 95.0 0.92 3.1E-05 52.9 19.9 108 798-928 192-302 (419)
18 3ltm_A Alpha-REP4; protein eng 94.8 0.31 1.1E-05 50.4 13.8 149 660-862 54-202 (211)
19 2vgl_B AP-2 complex subunit be 94.7 1.4 4.9E-05 53.5 21.6 224 661-927 126-371 (591)
20 3ltj_A Alpharep-4; protein eng 94.6 0.3 1E-05 50.2 13.0 116 661-816 50-165 (201)
21 2vgl_B AP-2 complex subunit be 93.5 1.9 6.6E-05 52.4 19.2 201 666-904 96-312 (591)
22 1b3u_A Protein (protein phosph 92.8 0.63 2.2E-05 55.6 13.3 285 660-986 285-586 (588)
23 1w63_A Adapter-related protein 91.9 1.2 4.2E-05 54.5 14.5 135 666-818 117-263 (618)
24 1b3u_A Protein (protein phosph 91.4 2 6.7E-05 51.2 15.3 212 661-903 247-470 (588)
25 4hxt_A De novo protein OR329; 91.0 2 6.7E-05 44.9 13.2 166 663-862 9-198 (252)
26 4db8_A Armadillo-repeat protei 90.4 2 6.9E-05 45.2 12.6 174 655-862 11-208 (252)
27 2vgl_A Adaptor protein complex 89.4 1.5 5E-05 54.0 11.9 285 667-990 122-436 (621)
28 1te4_A Conserved protein MTH18 89.1 0.69 2.4E-05 44.3 7.0 86 660-771 46-131 (131)
29 1w63_A Adapter-related protein 88.8 4.7 0.00016 49.3 15.9 229 666-928 323-567 (618)
30 4b8j_A Importin subunit alpha- 85.9 6.2 0.00021 46.7 14.2 226 657-922 76-340 (528)
31 2jdq_A Importin alpha-1 subuni 84.8 13 0.00044 42.4 15.9 227 660-926 69-335 (450)
32 4b8j_A Importin subunit alpha- 84.3 5.9 0.0002 46.9 13.0 207 658-903 120-358 (528)
33 1wa5_B Importin alpha subunit; 84.1 5.4 0.00019 47.3 12.6 203 660-903 135-370 (530)
34 3ul1_B Importin subunit alpha- 82.4 20 0.00068 42.4 16.6 226 660-921 105-369 (510)
35 1wa5_B Importin alpha subunit; 81.9 17 0.0006 42.8 15.9 224 657-921 89-352 (530)
36 4db6_A Armadillo repeat protei 81.3 8.7 0.0003 39.0 11.3 136 655-818 11-167 (210)
37 1lsh_A Lipovitellin (LV-1N, LV 81.2 5.7 0.0002 51.8 12.0 108 802-927 453-563 (1056)
38 4ady_A RPN2, 26S proteasome re 80.7 1.2E+02 0.0039 38.9 22.9 210 670-927 451-663 (963)
39 2vgl_A Adaptor protein complex 76.7 20 0.00067 43.9 14.2 227 664-929 337-580 (621)
40 3tpo_A Importin subunit alpha- 76.5 60 0.0021 38.4 18.2 227 659-921 123-388 (529)
41 2jdq_A Importin alpha-1 subuni 76.4 31 0.0011 39.1 15.2 222 660-921 25-287 (450)
42 1u6g_C TIP120 protein, CAND1; 75.2 14 0.00047 48.8 13.2 237 660-928 11-274 (1230)
43 4fdd_A Transportin-1; heat rep 74.9 75 0.0026 39.8 19.5 291 661-986 133-470 (852)
44 4fdd_A Transportin-1; heat rep 73.9 1.9E+02 0.0063 36.2 23.1 62 657-720 360-429 (852)
45 1qgr_A Protein (importin beta 70.3 70 0.0024 39.8 17.5 60 660-721 370-438 (876)
46 4hxt_A De novo protein OR329; 66.4 1.2E+02 0.004 30.9 17.5 166 660-862 48-240 (252)
47 4db8_A Armadillo-repeat protei 66.2 53 0.0018 33.9 13.0 131 660-818 58-209 (252)
48 3opb_A SWI5-dependent HO expre 66.0 86 0.0029 39.2 16.3 156 690-862 458-634 (778)
49 2bpt_A Importin beta-1 subunit 65.4 2E+02 0.0069 35.4 20.3 135 659-816 372-527 (861)
50 1ibr_B P95, importin beta-1 su 63.6 1.9E+02 0.0066 32.4 19.1 237 665-928 137-425 (462)
51 2z6g_A B-catenin; FULL-length, 63.5 1.1E+02 0.0038 38.1 17.3 216 659-904 402-664 (780)
52 2z6g_A B-catenin; FULL-length, 62.5 50 0.0017 41.4 13.8 262 691-993 362-669 (780)
53 4ady_A RPN2, 26S proteasome re 61.3 3.5E+02 0.012 34.6 22.5 261 660-965 476-750 (963)
54 3tjz_B Coatomer subunit gamma; 58.6 39 0.0013 38.3 10.6 18 844-861 260-277 (355)
55 3ul1_B Importin subunit alpha- 57.5 68 0.0023 37.7 13.1 210 657-902 59-302 (510)
56 2z6h_A Catenin beta-1, beta-ca 56.8 1.6E+02 0.0055 35.5 16.7 208 658-903 59-292 (644)
57 1jdh_A Beta-catenin; beta-cate 55.6 1.9E+02 0.0066 33.2 16.6 207 659-903 63-295 (529)
58 2z6h_A Catenin beta-1, beta-ca 54.2 1.2E+02 0.0042 36.5 15.1 103 690-818 225-336 (644)
59 2y3u_A Collagenase, collagenas 48.7 5.9 0.0002 49.4 1.8 106 276-382 338-468 (785)
60 1jdh_A Beta-catenin; beta-cate 47.6 1E+02 0.0035 35.6 12.5 200 666-903 111-339 (529)
61 1u4g_A Elastase, pseudolysin; 46.1 78 0.0027 34.9 10.1 103 277-390 72-180 (301)
62 3l9t_A Putative uncharacterize 46.1 37 0.0013 36.2 7.2 59 660-720 75-133 (240)
63 1qgr_A Protein (importin beta 44.8 5.2E+02 0.018 31.7 23.1 59 662-720 134-203 (876)
64 3cqb_A Probable protease HTPX 42.6 31 0.0011 31.9 5.4 17 345-361 83-99 (107)
65 1bqb_A Protein (aureolysin); h 40.3 92 0.0031 34.4 9.5 98 278-383 67-177 (301)
66 2vqx_A Metalloproteinase; ther 39.4 1E+02 0.0035 34.6 9.8 107 276-390 88-202 (341)
67 1u6g_C TIP120 protein, CAND1; 39.1 1.2E+02 0.004 39.9 12.2 205 666-903 58-284 (1230)
68 4db6_A Armadillo repeat protei 38.9 43 0.0015 33.6 6.4 94 659-772 57-166 (210)
69 3grl_A General vesicular trans 37.6 13 0.00044 45.4 2.3 190 664-901 130-340 (651)
70 3dnz_A Thermolysin; hydrolase, 33.1 1.5E+02 0.0052 32.8 9.8 102 276-385 68-177 (316)
71 4ger_A Gentlyase metalloprotea 32.3 1.5E+02 0.0053 32.6 9.6 101 277-385 62-170 (304)
72 3tpo_A Importin subunit alpha- 32.2 82 0.0028 37.1 8.2 57 662-720 341-406 (529)
73 3now_A UNC-45 protein, SD10334 30.8 1.6E+02 0.0056 37.0 10.8 138 690-862 496-651 (810)
74 2bpt_A Importin beta-1 subunit 29.7 2.1E+02 0.0074 35.2 11.9 211 690-921 598-836 (861)
75 2qk2_A LP04448P; mini spindles 25.9 1.8E+02 0.0061 30.0 8.7 117 659-816 60-184 (242)
76 3c37_A Peptidase, M48 family; 22.7 47 0.0016 35.5 3.4 54 304-361 63-116 (253)
77 1xqr_A HSPBP1 protein; armadil 22.6 5.3E+02 0.018 27.9 12.0 121 669-818 53-196 (296)
No 1
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=100.00 E-value=1.1e-71 Score=706.64 Aligned_cols=546 Identities=16% Similarity=0.189 Sum_probs=414.2
Q ss_pred CCCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeCCccEEEEEcCCceeEEEEEcCeee-eeEecCCCCccchhhhhhc
Q 001111 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPT-EFEYYPHNHQNVENEKRWR 91 (1154)
Q Consensus 13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~L~I~~V~Vng~~~-~f~~~~~~~~~~~~~~~~~ 91 (1154)
....+++.+.||+|++++|+++.++.|+++|++...+++.|.||+++|+|.+|++||.++ .|+..+
T Consensus 33 ~y~~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~l~Ld~~~L~I~sV~v~G~~l~~y~~~~------------- 99 (891)
T 3b34_A 33 DYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEE------------- 99 (891)
T ss_dssp GCCCCSEEEEEEEEEEECCSSCEEEEEEEEEEECSCTTCCEEEECSSCEEEEEEETTEECCSEEEET-------------
T ss_pred hCCCCCceeEEEEEEEEEECCceEEEEEEEEEEccCCCCEEEEECCCCEEEEEEEcCEEcceEEeeC-------------
Confidence 355678999999999999999999999999987544567899999999999999999887 555432
Q ss_pred ccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccccceeEEEEEEEecccccce
Q 001111 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIH 171 (1154)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~G~~ 171 (1154)
..|+|. + ++ +.++++ +.|.+.+..+ ....|++
T Consensus 100 --------------------------~~L~I~---~---lp---~~~~l~--I~y~~~p~~~-----------~~l~Gly 131 (891)
T 3b34_A 100 --------------------------GALVIS---N---LP---ERFTLK--IINEISPAAN-----------TALEGLY 131 (891)
T ss_dssp --------------------------TEEEEC---S---CC---SEEEEE--EEEEECGGGC-----------CSCCEEE
T ss_pred --------------------------CEEEEE---e---CC---CeEEEE--EEEEEeeccc-----------CCCceEE
Confidence 136663 1 11 123333 4444443211 0113444
Q ss_pred eccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCC-c-EEEecCceeeeeeecCCCCcEEEEEEeccccchhhhh
Q 001111 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (1154)
Q Consensus 172 F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~-~-~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~saylia 249 (1154)
+.+.+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++++.. .++++++++|+.++|||+|++|
T Consensus 132 ~s~~~~~Tq~Ep~~AR~~fPc~DeP~~kAtf~itI~~p~~~y~~alSNg~l~~~~~--~~~g~~~~~f~~t~pmstYL~A 209 (891)
T 3b34_A 132 QSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGE--LENGRHWVQWQDPFPKPCYLFA 209 (891)
T ss_dssp EETTEEEEECTTTTGGGTSSBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--CSTTEEEEEEEEEEEECGGGCC
T ss_pred EeCCEEEeccccCCCCccccCCCCcccceEEEEEEEeccccceEEEeCCcccccee--ecCCeEEEEEEeCCCccceeeE
Confidence 4445789999999999999999999999999999999997 6 8999999987653 3568899999999999999999
Q ss_pred hhccCeEEEecC----CC--CceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCc
Q 001111 250 LAVAPFEVLPDH----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (1154)
Q Consensus 250 faVG~F~~~~~~----~~--~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~ga 323 (1154)
|+||+|+.+++. .+ .++++|++|+..+.++++++.++++++|||++||++|||++|++|++|+...++|+++
T Consensus 210 ~~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~diVavPdf~~GaMEn~-- 287 (891)
T 3b34_A 210 LVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENK-- 287 (891)
T ss_dssp EEEECCEEEEEEEECTTCCEEEEEEEECTTCGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSEECCT--
T ss_pred EEeccceEEeeeeeccCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCcCccccC--
Confidence 999999998752 22 5799999999999999999999999999999999999999999999997656678877
Q ss_pred eeeee-ccccccCcccc-hhhh-hhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHH
Q 001111 324 AMGIF-SSQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (1154)
Q Consensus 324 gLii~-s~~LL~~~~~~-d~~~-~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~ 400 (1154)
|+++| +..+|+++... +... ....+||||+|||||||+|||+||+|+|||||||+|++.+|++...|....++....
T Consensus 288 GLitf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~~~~~~~ 367 (891)
T 3b34_A 288 GLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVR 367 (891)
T ss_dssp TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 67888 45678876543 2222 234689999999999999999999999999999999999999988775544332221
Q ss_pred HhhhhhhcccCCCccccCCCccccCCC---CccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCC
Q 001111 401 ANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRT 477 (1154)
Q Consensus 401 ~~~~~~~~d~~~~~~L~s~~s~~~l~~---~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~t 477 (1154)
.........+.+ +..+++.. .++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 368 ~l~~~~~~~D~~-------~~~~Pi~~~~~~~i~~~f~~i~Y~KGa~VLrML~~~lG~e~F~~gLr~Yl~~~~~~~---- 436 (891)
T 3b34_A 368 TMRGLQFAEDAS-------PMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSA---- 436 (891)
T ss_dssp HHHHTHHHHHTS-------TTCCCSSCSEESCGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEE----
T ss_pred HHHHhhhhhhcc-------ccCCCCccccccccccccccchhhHHHHHHHHHHHHHCHHHHHHHHHHHHHhccCCC----
Confidence 111100011111 11222221 2345678889999999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHhcCCCCccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCC
Q 001111 478 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 557 (1154)
Q Consensus 478 lst~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1154)
+++++|++.++++++ .|+++| ++|++++|+|.++|+..|+.+++.++++++|...... ....
T Consensus 437 att~Df~~ale~~sg---~dL~~f-~~W~~q~G~P~l~V~~~~~~~~~~~~ltl~Q~~~~~~--------------~~~~ 498 (891)
T 3b34_A 437 ATCDDFVQAMEDASN---VDLSHF-RRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATP--------------DQAE 498 (891)
T ss_dssp ECHHHHHHHHHHHHC---CCCTTT-THHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCBT--------------TBSC
T ss_pred CCHHHHHHHHHHHhC---CCHHHH-HHHHcCCCCceEEEEEEeecCCCEEEEEEEEecCCCC--------------CCCC
Confidence 799999999999884 688884 7999999999999999998777777788877542110 0012
Q ss_pred CCCcceeEEEEEEecCCccccccccCCCCc-eEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCcccccccccCCCCCc
Q 001111 558 DIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPL 636 (1154)
Q Consensus 558 ~~~~~gpmtvri~E~DGt~eh~v~~~~~~~-~~~~ei~~~sK~~~rR~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~ 636 (1154)
...|++|+++.+.+.||.. +++ .+.++. ..++.+. +.+...+ +...+ +.|
T Consensus 499 ~~~~~iPi~v~l~~~~G~~-~~~-~~~~~~~~~~~~l~--------------------~~~~~~~-~~~v~-----~~P- 549 (891)
T 3b34_A 499 KQPLHIPFAIELYDNEGKV-IPL-QKGGHPVNSVLNVT--------------------QAEQTFV-FDNVY-----FQP- 549 (891)
T ss_dssp CCCCCEEEEEEEECTTSCB-CCC-EETTEECCSEEEEC--------------------SSEEEEE-ECCCC-----SCC-
T ss_pred CceEEEEEEEEEEcCCCCc-ccc-cccccccceEEEec--------------------CCcEEEE-EccCC-----CCC-
Confidence 3479999999999888863 111 011110 0011110 0000000 10011 223
Q ss_pred eEEEEcCCCcEEEEEecCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001111 637 SWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1154)
Q Consensus 637 ~WIRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1154)
||++|+++....+|++++++++|+.||++|+|+.+|.||++.|.+
T Consensus 550 -~~~l~~~~s~~~~v~~~~~~~~l~~~l~~d~d~~~R~~a~~~L~~ 594 (891)
T 3b34_A 550 -VPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLA 594 (891)
T ss_dssp -EEEESTTCCSSCEEECCCCHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred -cEEEcCCCcceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999985
No 2
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=100.00 E-value=1.6e-71 Score=700.73 Aligned_cols=541 Identities=13% Similarity=0.130 Sum_probs=417.3
Q ss_pred CCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC-CccEEEEEcCCceeEEEEEcCeeee----eEecCCCCccchhhh
Q 001111 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTE----FEYYPHNHQNVENEK 88 (1154)
Q Consensus 14 ~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~~~~I~L~a~~L~I~~V~Vng~~~~----f~~~~~~~~~~~~~~ 88 (1154)
..++++.+.||+|++++|+++++++|+++|++.+. +++.|.||+++|+|.+|+|||+++. |.+.+
T Consensus 9 y~~~~~~V~h~~L~l~ld~~~~~v~G~~~i~~~~~~~~~~l~LD~~~L~I~sV~vnG~~l~~~~~~~~~~---------- 78 (889)
T 3ebh_A 9 YKPSGFIINQVTLNINIHDQETIVRSVLDMDISKHNVGEDLVFDGVGLKINEISINNKKLVEGEEYTYDN---------- 78 (889)
T ss_dssp CCCCSEEEEEEEEEEEECSSCEEEEEEEEEEECTTCCSCCEEEECCSCEEEEEEETTEECCBTTTEEECS----------
T ss_pred CCCCCcEEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCceEEEECCCCEEEEEEECCEEcCcccceEecC----------
Confidence 56779999999999999999999999999988653 4789999999999999999998753 33321
Q ss_pred hhcccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccccceeEEEEEEEecccc
Q 001111 89 RWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEV 168 (1154)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~ 168 (1154)
..|.|.++. ++. +.+++ .+.|.|.+.... .-.
T Consensus 79 -----------------------------~~L~I~l~~----l~~--~~~~l--~I~y~~~p~~~~-----------~l~ 110 (889)
T 3ebh_A 79 -----------------------------EFLTIFSKF----VPK--SKFAF--SSEVIIHPETNY-----------ALT 110 (889)
T ss_dssp -----------------------------SEEEECGGG----SCS--SSEEE--EEEEEECGGGCT-----------TCS
T ss_pred -----------------------------CEEEEecCC----CCC--CcEEE--EEEEEecCccCC-----------Cce
Confidence 246664321 211 22333 344555443210 012
Q ss_pred cceeccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCC-c-EEEecCceeeeeeecCCCCcEEEEEEeccccchh
Q 001111 169 GIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAK 246 (1154)
Q Consensus 169 G~~F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~-~-~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~say 246 (1154)
|+++.+.+++|||||.+||+||||+|+|+.||||+++|++|++ | +++|||+++++.. .++++++++|..++|||+|
T Consensus 111 Gly~s~~~~~TQ~Ep~~AR~~fPC~DeP~~KAtf~itIt~p~~~~~valSNg~l~~~~~--~~~g~~~~~f~~t~pmstY 188 (889)
T 3ebh_A 111 GLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFE--IPGGRHGARFNDPPLKPCY 188 (889)
T ss_dssp EEEEETTEEEEECTTTTGGGTSCBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--ETTTEEEEEEEEEEEECGG
T ss_pred eeEEECCeEEEcccCCCCCEEEEEcCCCCcceEEEEEEEEccccCeEEEccCcccccee--cCCCeEEEEEecCCccchh
Confidence 4444445889999999999999999999999999999999997 8 5799999987653 3468899999999999999
Q ss_pred hhhhhccCeEEEecC-----CC--CceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCcccccc
Q 001111 247 WITLAVAPFEVLPDH-----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSS 319 (1154)
Q Consensus 247 liafaVG~F~~~~~~-----~~--~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~ 319 (1154)
++||+||+|+.+++. .+ .++++|++|+..+.++++++.++++++|||++||++|||++|++|++|+...++|+
T Consensus 189 LvA~~vG~f~~~~~~~~t~~~G~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~kyd~VavPdF~~GaME 268 (889)
T 3ebh_A 189 LFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAME 268 (889)
T ss_dssp GCCEEEECEEEEEEEEECSSSCCEEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSEEC
T ss_pred heeeEEecceEEeeeeeecCCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCCCceEEEEeccccchhhc
Confidence 999999999998753 23 46899999999999999999999999999999999999999999999976567888
Q ss_pred ccCceeeee-ccccccCcccc-hhhh-hhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHH
Q 001111 320 TFGAAMGIF-SSQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARY 396 (1154)
Q Consensus 320 ~~gagLii~-s~~LL~~~~~~-d~~~-~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~ 396 (1154)
++ |+++| +..+|+++... +... ....+||||+|||||||+|||+||+|+|||||||+|++.+|.+...|....++
T Consensus 269 N~--GLvtf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHQWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~r~ 346 (889)
T 3ebh_A 269 NK--GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRL 346 (889)
T ss_dssp CT--TEEEEEGGGTCCCTTTSCTHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHHCCTHHHH
T ss_pred CC--ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhcCeeeecccccceeeHHHHHHHHHHHHHHhcCHHHHHH
Confidence 87 57888 55678877543 3222 23458999999999999999999999999999999999999999988876554
Q ss_pred HHHHHhhh-hhhcccCCCccccCCCccccCCC---CccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Q 001111 397 RRYKANCA-VCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGA 472 (1154)
Q Consensus 397 ~~~~~~~~-~~~~d~~~~~~L~s~~s~~~l~~---~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~ 472 (1154)
........ ....| .+ +..+++.+ .++...|+.++|.||++|||||+..||++.|+++|+.|+++++++
T Consensus 347 ~~~~~lr~~~~~~D-~~-------~~shPI~~~~~~ei~~~f~~i~Y~KGa~vLrML~~~lGde~F~~gLr~Yl~~~~~~ 418 (889)
T 3ebh_A 347 SHVDLLRSVQFLED-SS-------PLSHPIRPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGN 418 (889)
T ss_dssp HHHHHHHHHHHHHH-TS-------TTCCCSSCSEESCGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhhc-cC-------ccCCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCC
Confidence 33221111 11111 11 12223321 234567899999999999999999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHhcC----CCCccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCC
Q 001111 473 SPVRTLSTKEFRHFANKVGN----LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSS 548 (1154)
Q Consensus 473 ~~~~tlst~~F~~l~e~vs~----~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~ 548 (1154)
+ ++++||++.+++++. ..|.|+.. |++|++++|+|+++|+.+++.+++.++++|+|.......
T Consensus 419 n----att~Df~~ale~as~~~~~~~g~dL~~-f~~Wl~q~G~P~l~V~~~~d~~~~~~~ltl~Q~~~~~~~-------- 485 (889)
T 3ebh_A 419 T----ATCEDFNYAMEQAYKMKKADNSANLNQ-YLLWFSQSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDEN-------- 485 (889)
T ss_dssp E----ECHHHHHHHHHHHHHHHHTCTTCCCTG-GGHHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCCSS--------
T ss_pred C----CCHHHHHHHHHHHhhhccCCCCCCHHH-HHHHhcCCCCceEEEEEeecCCCCEEEEEEEEecCCCCC--------
Confidence 6 799999999988861 01457885 589999999999999999998778888998887532110
Q ss_pred CCCCCCCCCCCCcceeEEEEEEec-CCc-c--ccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCccc
Q 001111 549 NTDSENRDGDIGWPGMMSIRVHEL-DGM-Y--DHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVA 624 (1154)
Q Consensus 549 ~~~~~~~~~~~~~~gpmtvri~E~-DGt-~--eh~v~~~~~~~~~~~ei~~~sK~~~rR~~k~kk~~~~~~~~~~~d~~~ 624 (1154)
......|..|++|.+... +|. . .++ +.+. +.-+.|.++.
T Consensus 486 ------~~~~~~~~IPl~v~l~~~~~G~~~~~~~~-l~l~-~~~q~f~~~~----------------------------- 528 (889)
T 3ebh_A 486 ------QKEKKPLFIPISVGLINPENGKEMISQTT-LELT-KESDTFVFNN----------------------------- 528 (889)
T ss_dssp ------CSSCCCCCEEEEEEEECTTTCCBCSCCEE-EEEC-SSEEEEEESC-----------------------------
T ss_pred ------CCCCceEEEEEEEEEEeCCCCccccceeE-EEec-CCcEEEEEcC-----------------------------
Confidence 012347999999999887 776 2 222 1121 1222232210
Q ss_pred ccccccCCCCCceEEEEcCCCcEEEEEecCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001111 625 GLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1154)
Q Consensus 625 ~~d~~~~~~~p~~WIRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1154)
..+++ |+.++++|.-..+++.+.++.++..||++|.|..+|.||++.|..
T Consensus 529 -------~~~~p-~~sl~r~fsa~v~l~~~~~~~~l~~l~~~d~d~~~r~~a~~~l~~ 578 (889)
T 3ebh_A 529 -------IAVKP-IPSLFRGFSAPVYIEDQLTDEERILLLKYDSDAFVRYNSCTNIYM 578 (889)
T ss_dssp -------CCSCC-EEEESTTCCSSSEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred -------CCCCC-eEEEcCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 01122 447999999999999999999999999999999999999999875
No 3
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=100.00 E-value=4.5e-69 Score=690.31 Aligned_cols=601 Identities=16% Similarity=0.207 Sum_probs=426.6
Q ss_pred CCCCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEe-CCccEEEEEcCCceeEEEEEcCeeeeeEecCCCCccchhhhhh
Q 001111 12 TKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRW 90 (1154)
Q Consensus 12 ~~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~~ 90 (1154)
.++....++|.||+|.|++|+++.+|+|.|+|++.+ .+++.|.||+++|+|.+|.|++....-..... ..+ ..
T Consensus 66 ~~RLP~~v~P~hY~L~L~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~I~~v~v~~~~~~~~~~~~--~~~----~~ 139 (967)
T 3se6_A 66 ELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPG--KEL----KV 139 (967)
T ss_dssp CSSCCTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCCSEEEEECSSCEEEEEEEEECC---CCSSC--EEC----EE
T ss_pred cccCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEEEcCCCEEEEECCCCEEEEEEEeccCCccccccc--cee----ee
Confidence 367778999999999999999999999999999987 46899999999999999998632210000000 000 00
Q ss_pred cccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeeccccccc-ceeEEEEEEEeccccc
Q 001111 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKVEVG 169 (1154)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~v~i~y~~~~p~~G 169 (1154)
........|.|.++. .++.|. .+++ .+.|+|.+... .|+++..|... +|
T Consensus 140 ---------------------~~~~~~~~l~i~l~~---~L~~g~-~~~l--~i~y~g~~~~~~~G~y~s~y~~~---~g 189 (967)
T 3se6_A 140 ---------------------LSYPAHEQIALLVPE---KLTPHL-KYYV--AMDFQAKLGDGFEGFYKSTYRTL---GG 189 (967)
T ss_dssp ---------------------EEEGGGTEEEEECSS---CCCTTC-CEEE--EEEEEEECBSSSSEEEEEEEECT---TS
T ss_pred ---------------------EEecCCCEEEEEcCC---ccCCCC-eEEE--EEEEEEecCCCccceeeeeeEcC---CC
Confidence 000011247776533 233332 2344 57888987654 58999888632 34
Q ss_pred ceeccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeeeecCCCCcEEEEEEeccccchhhhh
Q 001111 170 IHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (1154)
Q Consensus 170 ~~F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~saylia 249 (1154)
. ..++++|||||.+||+||||+|+|+.||+|+|+|++|++|+|+|||++.++.. .++++++++|..++|||+|++|
T Consensus 190 ~--~~~~~~Tq~ep~~AR~~FPC~DeP~~KAtf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~~F~~t~pmstYLva 265 (967)
T 3se6_A 190 E--TRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIE--LEGGLLEDHFETTVKMSTYLVA 265 (967)
T ss_dssp C--EEEEEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEECTTCEEEESSCEEEEEE--CTTSCEEEEECCCCSBCGGGCC
T ss_pred c--eEEEEEEecccCCCCeEEEecCCcCceeEEEEEEEECCCcEEEeCCCccccee--cCCCeEEEEEecCCCccceeEE
Confidence 2 25678999999999999999999999999999999999999999999976543 4568999999999999999999
Q ss_pred hhccCeEEEecC--CCCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCceeee
Q 001111 250 LAVAPFEVLPDH--HQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGI 327 (1154)
Q Consensus 250 faVG~F~~~~~~--~~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii 327 (1154)
|+||+|+.++.. .+.++++|++|+..+.++++++.+.++++|||++||+||||+||++|++|+...++|+++ |+++
T Consensus 266 ~~vg~f~~~~~~~~~gv~v~v~~~p~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vPdf~~GaMEn~--Glit 343 (967)
T 3se6_A 266 YIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENW--GLIT 343 (967)
T ss_dssp EEEECCEEEEEECTTCCEEEEEECGGGGGGGHHHHHHHHHHHHHHHHHHTCCCCSSEEEEEEESSCSSSEECCT--TEEE
T ss_pred EEEeceEEEEeecCCCcEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccEEEecCCCCcccccC--Cccc
Confidence 999999998753 467899999999999999999999999999999999999999999999997666788888 5788
Q ss_pred e-ccccccCcccchhh--hhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHHHhhh
Q 001111 328 F-SSQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCA 404 (1154)
Q Consensus 328 ~-s~~LL~~~~~~d~~--~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~~~~~ 404 (1154)
+ ++.+|++++..... .....+||||+|||||||+||++||+|+|||||||+|++++++++.+|.....-........
T Consensus 344 y~e~~ll~d~~~s~~~~k~~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~p~~~~~~~~~~~~~~ 423 (967)
T 3se6_A 344 YRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFE 423 (967)
T ss_dssp EEGGGTCCCTTTCCHHHHHHHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHH
T ss_pred cchhheecCcccCCHHhhHhHHHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 9 56688888754322 23346899999999999999999999999999999999999999998876431000111111
Q ss_pred hhhcccCCCccccCCCccccCC-CCccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCCCCHHHH
Q 001111 405 VCKADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEF 483 (1154)
Q Consensus 405 ~~~~d~~~~~~L~s~~s~~~l~-~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~tlst~~F 483 (1154)
.+..|... .+.|...++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++||
T Consensus 424 al~~D~~~----~~~Pi~~~v~~~~~i~~~Fd~i~Y~KGa~vL~mL~~~lG~e~F~~gLr~Yl~~~~~~n----at~~Dl 495 (967)
T 3se6_A 424 VITKDSLN----SSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRN----AKNDDL 495 (967)
T ss_dssp HHTTTTST----TCCCSSCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEE----ECHHHH
T ss_pred HHHhhccc----CCCCceeecCCHHHHHHhcchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCC----CCHHHH
Confidence 11111100 0111111221 22345679999999999999999999999999999999999999996 689999
Q ss_pred HHHHHHhcC------------------------CCCccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeeccCCC
Q 001111 484 RHFANKVGN------------------------LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKP 539 (1154)
Q Consensus 484 ~~l~e~vs~------------------------~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~ 539 (1154)
++.++++.. .++.++++||++|+.|+|+|+++|+.+ ++.+.++|+|+.....
T Consensus 496 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv~~~m~~W~~q~G~Pvl~V~~~----~~~~~l~Q~rf~~~~~ 571 (967)
T 3se6_A 496 WSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQD----GCSLRLQQERFLQGVF 571 (967)
T ss_dssp HHHHHCC-------------------------CCCCCCHHHHHHHHHHSCSCEEEEEEEE----TTEEEEEEEECCCC--
T ss_pred HHHHHHHhhhccccccccccccccccccccccccCCcCHHHHHHHHhcCCCCcEEEEEec----CCEEEEEeeeecCCCC
Confidence 998887521 146799999999999999999999972 3468888888753211
Q ss_pred CCCCCccCCCCCCCCCCCCCCcceeEEEEEEecCCccccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCCCCCCCC
Q 001111 540 DSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDN 619 (1154)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~gpmtvri~E~DGt~eh~v~~~~~~~~~~~ei~~~sK~~~rR~~k~kk~~~~~~~~~~ 619 (1154)
... ++.........|++|+++.... +++..... +..+. ..
T Consensus 572 ~~~-------~~~~~~~~~~~W~IPl~~~~~~-~~~~~~~~--l~~~~-~~----------------------------- 611 (967)
T 3se6_A 572 QED-------PEWRALQERYLWHIPLTYSTSS-SNVIHRHI--LKSKT-DT----------------------------- 611 (967)
T ss_dssp ----------------CCSCCCCCCEEEEESS-CCCCEEEC--CCSSE-EE-----------------------------
T ss_pred CCc-------cccccccCCceEEEEEEEEeCC-CCccceEE--ecCCc-eE-----------------------------
Confidence 000 0000001235799999886532 12211100 00000 00
Q ss_pred CCcccccccccCCCCCceEEEEcCCCcEEEEEecCCC-HHHHHHHHhhCC---CcHHHHHHH---HHHHhCCCCchhHHH
Q 001111 620 GDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDG---DVVAQAQAI---AALEALPHLSFNVVN 692 (1154)
Q Consensus 620 ~d~~~~~d~~~~~~~p~~WIRiDpd~ewl~~v~~~qp-~~m~~~QL~~dr---DV~aQ~eAi---~~L~~~~~~s~~~~~ 692 (1154)
+ + ..++.+||.++++..=..+|+.+.. ....+.||+.+. ++..|..-| -+|......+....-
T Consensus 612 ---i---~----~~~~~~wi~~N~~~~GyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~~~~l 681 (967)
T 3se6_A 612 ---L---D----LPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKAL 681 (967)
T ss_dssp ---E---E----CSSCCSCEEESGGGCSSCEEEEETTHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred ---E---e----ccCCCceEEEeCCccEEEEEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 1 0 0123579999999999999999876 555667786543 566555433 344443333433333
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHc
Q 001111 693 TLNNFLSDSKAFWRVRIEAAYALAN 717 (1154)
Q Consensus 693 ~L~~~l~d~~~F~~VR~~Aa~aLa~ 717 (1154)
-|.+.|.+|.- |-+=..|...|..
T Consensus 682 ~l~~~l~~E~~-~~~w~~a~~~l~~ 705 (967)
T 3se6_A 682 DMTYYLQHETS-SPALLEGLSYLES 705 (967)
T ss_dssp HHTTGGGTCCC-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCCc-HHHHHHHHHHHHH
Confidence 34566666653 3444555555544
No 4
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=100.00 E-value=9.8e-69 Score=686.96 Aligned_cols=547 Identities=15% Similarity=0.227 Sum_probs=403.7
Q ss_pred CCCCCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEe-CCccEEEEEcCCceeEEEEEcCe---eeeeEecCCCCccchh
Q 001111 11 ETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE---PTEFEYYPHNHQNVEN 86 (1154)
Q Consensus 11 ~~~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~L~I~~V~Vng~---~~~f~~~~~~~~~~~~ 86 (1154)
..++....+.|.||+|+|++|+++.+|.|+|+|++.+ .+++.|.||+++|+|.+|+|+|. ++.+.....
T Consensus 5 ~~~rLp~~~~p~hY~l~L~~d~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~v~~~~~~~~~~~~~~~------- 77 (897)
T 2xdt_A 5 NKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQV------- 77 (897)
T ss_dssp CCSSCCSSEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCEEEEEEECSSCEEEEEEEEEC----CEEEECEE-------
T ss_pred ccCcCCCCcEeeEEEEEEEEecCCCeEEEEEEEEEEEEcCCCEEEEEeCCCEEEEEEEEecCCccccccccee-------
Confidence 3567778999999999999999999999999999987 46789999999999999999642 221111000
Q ss_pred hhhhcccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeeccccccc-ceeEEEEEEEec
Q 001111 87 EKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEK 165 (1154)
Q Consensus 87 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~v~i~y~~~~ 165 (1154)
........|.|.++.+ +..|. .+++ .+.|.|.+... .|+++..|..
T Consensus 78 -------------------------~~~~~~~~l~i~l~~~---L~~g~-~~~L--~i~y~g~~~~~~~G~y~s~y~~-- 124 (897)
T 2xdt_A 78 -------------------------LEHPRQEQIALLAPEP---LLVGL-PYTV--VIHYAGNLSETFHGFYKSTYRT-- 124 (897)
T ss_dssp -------------------------EEETTTTEEEEEEEEE---ECTTC-CEEE--EEEEEEECBSSSSEEEEEEEEC--
T ss_pred -------------------------EEcCCCcEEEEEeCCc---cCCCC-EEEE--EEEEEEEeCCCCceeEeeeeec--
Confidence 0000122467765321 22222 2344 56888887643 5899988863
Q ss_pred ccccceeccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeeeecCCCCcEEEEEEeccccch
Q 001111 166 VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (1154)
Q Consensus 166 p~~G~~F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~sa 245 (1154)
+ +|. .+++++|||||.+||+||||+|+|+.||+|+|+|++|++|+|+|||+++++.. .++++++++|..++|||+
T Consensus 125 ~-~g~--~~~~~~Tq~ep~~AR~~fPc~DeP~~Katf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~~f~~t~pmst 199 (897)
T 2xdt_A 125 K-EGE--LRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVT--VAEGLIEDHFDVTVKMST 199 (897)
T ss_dssp T-TSC--EEEEEEEECTTTTHHHHSCBCCSTTSCBEEEEEEEECTTCEEEESSCEEEEEE--EETTEEEEEECCCCSBCG
T ss_pred C-CCc--eeEEEEecceecccceEEeccCCccccCeEEEEEEEcCCceEecCCCccceEe--cCCCEEEEEEeCCCccch
Confidence 2 453 14678999999999999999999999999999999999999999999987643 245789999999999999
Q ss_pred hhhhhhccCeEEEec--CCCCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCc
Q 001111 246 KWITLAVAPFEVLPD--HHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (1154)
Q Consensus 246 yliafaVG~F~~~~~--~~~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~ga 323 (1154)
|++||+||+|+.++. ..+.++++|++|+..+.++++++.+.++++|||++||+||||+||++|++|+...++|+++
T Consensus 200 YL~a~~vg~f~~~~~~~~~gv~v~v~~~~~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~-- 277 (897)
T 2xdt_A 200 YLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENW-- 277 (897)
T ss_dssp GGCCEEEECCEEEEEECTTCCEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHTTCCCCSSEEEEEEESSCSSSEECCT--
T ss_pred hheEEEEEcceeeccccCCCeeEEEEcCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCccceeEEEeCCCcccchhcC--
Confidence 999999999999876 3457899999999999999999999999999999999999999999999997656778877
Q ss_pred eeeee-ccccccCcccchhh--hhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHH--HHHH
Q 001111 324 AMGIF-SSQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA--RYRR 398 (1154)
Q Consensus 324 gLii~-s~~LL~~~~~~d~~--~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~--r~~~ 398 (1154)
|++++ ++.+|++++..+.. .....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|+... .|
T Consensus 278 glit~~e~~ll~~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~f-- 355 (897)
T 2xdt_A 278 GLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-- 355 (897)
T ss_dssp TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCGGGGH--
T ss_pred CeeEEeeeeEeECCCCCcHHHHHHHHHHHHHHHHHHHcCCEeccCCcchhhhhHHHHHHHHHHHHHHhCCcchHHHHH--
Confidence 67889 45688988765322 2344589999999999999999999999999999999999999999876432 22
Q ss_pred HHHhhhhhhcccCCCccccCCCccccCC-CCccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCC
Q 001111 399 YKANCAVCKADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRT 477 (1154)
Q Consensus 399 ~~~~~~~~~~d~~~~~~L~s~~s~~~l~-~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~t 477 (1154)
.......+..|... .+.|...++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 356 ~~~~~~a~~~D~~~----~~~Pi~~~v~~p~~i~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~gl~~Yl~~~~~~~---- 427 (897)
T 2xdt_A 356 FGKCFDAMEVDALN----SSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKN---- 427 (897)
T ss_dssp HHHHHHHHHHHTST----TCCCSSCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTEE----
T ss_pred HHHHHHHHHhhccc----CCCCCEEeCCCHHHHHHhcchhhhhhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCC----
Confidence 11111111112110 0111111221 22345679999999999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHhcC---------------C-C--------CccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEe
Q 001111 478 LSTKEFRHFANKVGN---------------L-E--------RPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLR 533 (1154)
Q Consensus 478 lst~~F~~l~e~vs~---------------~-~--------g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q 533 (1154)
+++++|.+.++++.. . + +.|+++||++|++++|+|+++|+++ ++.++++|+|
T Consensus 428 a~~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~dl~~~~~~W~~q~G~P~l~v~~~----~~~~~l~Q~~ 503 (897)
T 2xdt_A 428 TKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVR----GRNVHMKQEH 503 (897)
T ss_dssp ECHHHHHHHHHTC----------------------------CCCHHHHHHHHHSSCSEEEEEEEEE----TTEEEEEEEE
T ss_pred CCHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCHHHHHHHhhcCCCceEEEEEEc----CCEEEEEEEE
Confidence 789999998887511 1 2 5799999999999999999999875 3457788777
Q ss_pred eccCCCCCCCCccCCCCCCCCCCCCCCcceeEEEEEEecCCccccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCC
Q 001111 534 DCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKP 613 (1154)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpmtvri~E~DGt~eh~v~~~~~~~~~~~ei~~~sK~~~rR~~k~kk~~~~ 613 (1154)
+...... + ......|+.|+++... .++.. + ++.+...+.
T Consensus 504 f~~~~~~----------~---~~~~~~w~iPi~~~~~-~~~~~-~-----------~~~l~~~~~--------------- 542 (897)
T 2xdt_A 504 YMKGSDG----------A---PDTGYLWHVPLTFITS-KSDMV-H-----------RFLLKTKTD--------------- 542 (897)
T ss_dssp ECCC------------------CCCCCCCEEEEEEES-SCSSC-E-----------EEEECSSEE---------------
T ss_pred eecCCCC----------C---CCCCceEEEEEEEEeC-CCCcc-c-----------eEEecCCce---------------
Confidence 6432110 0 0123479999998532 11110 1 111110000
Q ss_pred CCCCCCCCcccccccccCCCCCceEEEEcCCCcEEEEEecCCCH-HHHHHHHhhCC---CcHHHH
Q 001111 614 DGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPV-QMWINQLEKDG---DVVAQA 674 (1154)
Q Consensus 614 ~~~~~~~d~~~~~d~~~~~~~p~~WIRiDpd~ewl~~v~~~qp~-~m~~~QL~~dr---DV~aQ~ 674 (1154)
.+ . ...+..||.++++..-..+|+.+... .....||..+. ++..|.
T Consensus 543 --------~~-~------~~~~~~~i~~N~~~~gyyrV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra 592 (897)
T 2xdt_A 543 --------VL-I------LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRA 592 (897)
T ss_dssp --------EE-E------CSSCCSCEEESGGGCSSCEEEECTTHHHHHHHHHHHCGGGSCHHHHH
T ss_pred --------EE-E------ccCCCceEEECCCceEEEEEEcCHHHHHHHHHHHHhCcccCCHHHHH
Confidence 01 0 01235799999999999999999753 45667777654 554443
No 5
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=100.00 E-value=3.8e-68 Score=675.94 Aligned_cols=570 Identities=15% Similarity=0.151 Sum_probs=417.1
Q ss_pred CCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeCCccEEEEEcCCceeEEEEEcCeeeeeEecCCCCccchhhhhhccccc
Q 001111 16 NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVS 95 (1154)
Q Consensus 16 ~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~~~~~v~ 95 (1154)
.+++.+.||+|++++|+++.++.|+++|+.. .+++.|.||+++ +|++|++||+++.|+..+.
T Consensus 13 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~-~~~~~i~Ld~~~-~I~sv~v~g~~~~~~~~~~---------------- 74 (867)
T 2gtq_A 13 TPAYHILKTDLHFDINEPQTVVKSRLTVEPQ-RVGEPLVLDGSA-KLLSVKINGAAADYVLEGE---------------- 74 (867)
T ss_dssp CCSEEEEEEEEEEEECSSCEEEEEEEEEEES-STTSCEEEECCS-EEEEEEETTEECCCEEETT----------------
T ss_pred CCCCceeEEEEEEEEECCcEEEEEEEEEEEe-CCCCEEEEecCC-CEEEEEECCeecceEeeCC----------------
Confidence 3578999999999999999999998888753 336789999999 9999999998876654321
Q ss_pred CCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccccceeEEEEEEEecccccceeccc
Q 001111 96 SPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGN 175 (1154)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~G~~F~~~ 175 (1154)
.|.|. + ++.+ .++++ +.|.+.+..+ ....|+++.+.
T Consensus 75 -----------------------~L~I~---~---lp~g--~~~l~--I~y~~~p~~~-----------~~~~Gly~s~~ 110 (867)
T 2gtq_A 75 -----------------------TLTIA---G---VPSE--RFTVE--VETEILPAEN-----------KSLMGLYASGG 110 (867)
T ss_dssp -----------------------EEEES---C---CCSS--CEEEE--EEEEECGGGC-----------CSCSEEEEETT
T ss_pred -----------------------EEEEE---e---cCCC--cEEEE--EEEEEeccCC-----------CCCcEEEEECC
Confidence 35552 1 1111 23343 3344333211 11134444445
Q ss_pred eEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCC-c-EEEecCceeeeeeecCCCCcEEEEEEeccccchhhhhhhcc
Q 001111 176 ALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVA 253 (1154)
Q Consensus 176 ~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~-~-~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~sayliafaVG 253 (1154)
+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++++.. .++++++++|+.++|||+|++||+||
T Consensus 111 ~~~Tq~ep~~AR~~fPc~DeP~~katf~itIt~p~~~y~~~lSNg~l~~~~~--~~~g~~~~~f~~t~pmstYL~A~~vG 188 (867)
T 2gtq_A 111 NLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDGGE--FSDGRHWVKWEDPFSKPSYLFALVAG 188 (867)
T ss_dssp EEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEEETTTCCEEEESSEEEEEEE--CTTSEEEEEEECCSCBCGGGCCEEEE
T ss_pred EEEEeeccCCCceeeccCCCCCcceEEEEEEEEccccceEEEeCCcccccee--ecCCeEEEEEEeCCCccccceeEEEe
Confidence 889999999999999999999999999999999997 6 9999999987643 35688999999999999999999999
Q ss_pred CeEEEecC----C--CCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCceeee
Q 001111 254 PFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGI 327 (1154)
Q Consensus 254 ~F~~~~~~----~--~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii 327 (1154)
+|+.+++. . +.++++|+.|+..+.++++++.++++++|||++||++|||++|++|++|+...++|+++ |+++
T Consensus 189 ~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~d~Vavpdf~~GaMEn~--glit 266 (867)
T 2gtq_A 189 DLAVTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENK--GLNI 266 (867)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESSCSSSEECCT--TEEE
T ss_pred cceEeeeceeccCCCceEEEEEeccccHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCccccccC--Ccee
Confidence 99998752 2 25789999999999999999999999999999999999999999999997656678877 6788
Q ss_pred e-ccccccCcccc-hhhh-hhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHHHhhh
Q 001111 328 F-SSQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCA 404 (1154)
Q Consensus 328 ~-s~~LL~~~~~~-d~~~-~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~~~~~ 404 (1154)
| ++.+|++++.. +... ....+||||+|||||||+|||+||+|+|||||||+|++.++.++..|....++........
T Consensus 267 f~e~~ll~~~~~~~~~~~~~i~~vIaHElAHqWfGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~l~~ 346 (867)
T 2gtq_A 267 FNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLRQ 346 (867)
T ss_dssp EEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ecccccccCcccCcHHHHHHHHHHHHHHHHHHhcCcEEEecccccccchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 8 55677877543 2222 2346899999999999999999999999999999999999999887755433322111110
Q ss_pred -hhhcccCCCccccCCCccccCC---CCccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCCCCH
Q 001111 405 -VCKADDSGATALSSSASCKDLY---GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLST 480 (1154)
Q Consensus 405 -~~~~d~~~~~~L~s~~s~~~l~---~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~tlst 480 (1154)
....| .+ +..+++. ..++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ +++
T Consensus 347 ~~~~~D-~~-------~~~~Pi~~~~~~~i~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~glr~Yl~~~~~~~----~t~ 414 (867)
T 2gtq_A 347 HQFPED-AG-------PTAHPVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLLGEEGFQKGMKLYFQRHDGQA----VTC 414 (867)
T ss_dssp HHHHHH-HS-------TTCCCSSCSEESCGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE----ECH
T ss_pred Hhhhhc-cC-------ccCCCCcCCChhhhhhhccchhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhCCCC----CCH
Confidence 01111 11 1112221 12345678889999999999999999999999999999999999986 799
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCCCCC
Q 001111 481 KEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIG 560 (1154)
Q Consensus 481 ~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1154)
++|.+.++++++ .|+.+| ++|++++|+|.++|+..|+++ .++++++|...... . ......
T Consensus 415 ~Df~~~l~~~sg---~dl~~f-~~W~~q~G~P~l~v~~~~~~~--~~~l~l~Q~~~~~~-----------~---~~~~~~ 474 (867)
T 2gtq_A 415 DDFRAAMADANG---INLDQF-ALWYSQAGTPVLEAEGRLKNN--IFELTVKQTVPPTP-----------D---MTDKQP 474 (867)
T ss_dssp HHHHHHHHHHHT---CCCGGG-GHHHHCCSCCEEEEEEEEETT--EEEEEEEEECCCBT-----------T---BSCCCC
T ss_pred HHHHHHHHHHhC---CCHHHH-HHHhcCCCCceEEEEEEecCC--EEEEEEEEecCCCC-----------C---CCCCce
Confidence 999999999884 688886 899999999999999988544 45566666432100 0 012347
Q ss_pred cceeEEEEEEecCCccccccccCCCCc--eEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCcccccccccCCCCCceE
Q 001111 561 WPGMMSIRVHELDGMYDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSW 638 (1154)
Q Consensus 561 ~~gpmtvri~E~DGt~eh~v~~~~~~~--~~~~ei~~~sK~~~rR~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~~W 638 (1154)
|++|+++.+.+.+|.- ++. .+.++. ...+.+. +.+.... +...+ +. -|
T Consensus 475 ~~iPi~~~~~~~~g~~-~~~-~~~~~~~~~~~~~l~--------------------~~~~~~~-~~~~~-----~~--p~ 524 (867)
T 2gtq_A 475 MMIPVKVGLLNRNGEA-VAF-DYQGKRATEAVLLLT--------------------EAEQTFL-LEGVT-----EA--VV 524 (867)
T ss_dssp CCEEEEEEEECTTCCB-CCE-ECSSCEESCEEEEEC--------------------SSEEEEE-EBCCC-----SC--CE
T ss_pred EEEEEEEEEEcCCCcc-ccc-ccccccccceEEEEc--------------------CCceEEE-EeCCC-----CC--Cc
Confidence 9999999998878762 111 011111 0111110 0000000 10011 12 36
Q ss_pred EEEcCCCcEEEEEecCCCHHHHHHHHhhCCCcHHHHHHHHHHHhC-------------C-CCchhHHHHHHHHhccCCch
Q 001111 639 IRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL-------------P-HLSFNVVNTLNNFLSDSKAF 704 (1154)
Q Consensus 639 IRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~~-------------~-~~s~~~~~~L~~~l~d~~~F 704 (1154)
+.++++|....+++.++++.+|..||.+|.|..+|.+|++.|.+. . .....+..++..++.|+.-=
T Consensus 525 ~~l~r~fs~~~~l~~~~~~~~l~~l~~~~~d~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 604 (867)
T 2gtq_A 525 PSLLRGFSAPVHLNYPYSDDDLLLLLAHDSDAFTRWEAAQTLYRRAVAANLATLSDGVELPKHEKLLAAVEKVISDDLLD 604 (867)
T ss_dssp EEESTTCCSSCEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHCSSSC
T ss_pred eEecCCCCccEEEECCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999997665531 1 11234566666666555445
Q ss_pred HHHHHHHHH
Q 001111 705 WRVRIEAAY 713 (1154)
Q Consensus 705 ~~VR~~Aa~ 713 (1154)
+.|+.++..
T Consensus 605 ~~~~a~~l~ 613 (867)
T 2gtq_A 605 NAFKALLLG 613 (867)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 555555543
No 6
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=100.00 E-value=2.5e-67 Score=675.41 Aligned_cols=545 Identities=15% Similarity=0.218 Sum_probs=393.4
Q ss_pred CCCCCCCeEEEEEEEEEEEECCC-----cEEEEEEEEEEEe-CCccEEEEEcCCceeEEE----EEcCe---e-e---ee
Q 001111 12 TKVENSGAVVRHQKLCLSIDMEK-----HQIYGYTELEIAV-PDIGIVGLHAENLGIESV----LVDGE---P-T---EF 74 (1154)
Q Consensus 12 ~~~~~~~~~~~hy~l~L~id~~~-----~~~~G~v~I~i~~-~~~~~I~L~a~~L~I~~V----~Vng~---~-~---~f 74 (1154)
.++....++|.||+|.|++|++. .+|+|.|+|++.+ .+++.|.||+++|+|.++ .+++. . . ..
T Consensus 8 ~yRLP~~v~P~hY~l~L~~~l~~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~i~~~~~~~~~~~~~~~~~~~~~~~ 87 (909)
T 4fke_A 8 RYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGHMVVLRGVGDSQVPEIDRT 87 (909)
T ss_dssp SSSCCSSEEEEEEEEEEEECCSCCSSSCCEEEEEEEEEEEESSCEEEEEEECCSCEECCSSSSCEEEESTTCCCCCEEEE
T ss_pred cccCcCCCEeEEEEEEEEEcCcCCCCCCceEEEEEEEEEEEecCCCEEEEEcCCCEEEeeeeEEEEecCCCcceecccce
Confidence 46888899999999999998754 4899999999987 478999999999999652 22111 0 0 00
Q ss_pred EecCCCCccchhhhhhcccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeeccccccc-
Q 001111 75 EYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN- 153 (1154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~- 153 (1154)
.+. .....|.|.++. .++.|. .+++ .+.|+|.+...
T Consensus 88 ~~~-------------------------------------~~~~~l~i~l~~---~l~~g~-~~~l--~i~y~g~~~~~~ 124 (909)
T 4fke_A 88 ELV-------------------------------------ELTEYLVVHLKG---SLQPGH-MYEM--ESEFQGELADDL 124 (909)
T ss_dssp EEE-------------------------------------TTTTEEEEEEEE---EECTTC-EEEE--EEEEEEECCSSS
T ss_pred EEe-------------------------------------cCCcEEEEEcCC---CcCCCC-EEEE--EEEEEEEECCCC
Confidence 110 112246776532 233332 2334 57889988754
Q ss_pred ceeEEEEEEEecccccceeccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeee-ecCCCCc
Q 001111 154 VKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVL-SKDDPPR 232 (1154)
Q Consensus 154 ~~~v~i~y~~~~p~~G~~F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~-~~~d~~~ 232 (1154)
.|+++..|... .. ..++++|||||.+||+||||+|+|+.||||+|+|++|++|+|+|||+++++.. ..+++++
T Consensus 125 ~G~y~s~y~~~--~~----~~~~~~Tqfep~~AR~~FPc~DeP~~KAtf~i~i~~p~~~~alSN~~~~~~~~~~~~~~~~ 198 (909)
T 4fke_A 125 AGFYRSEYMEG--NV----KKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNW 198 (909)
T ss_dssp SEEEEEEEEET--TE----EEEEEEEECTTTTGGGTSCBCCSTTSCBEEEEEEEEETTSEEEESSCBSSSCEECTTCTTE
T ss_pred eEEEEeeEEEC--Cc----eEEEEEEcCcccCcCEEEEeCCccccceEEEEEEEECCCCEEEcCCcccccccceecCCCe
Confidence 48999999742 12 25789999999999999999999999999999999999999999999876543 2356789
Q ss_pred EEEEEEeccccchhhhhhhccCeEEEecCC--CCceEEEeCCCchhh--HHHHHHHHHHHHHHHHHhcCCCCCCCCccEE
Q 001111 233 KTYVYRLDVPVSAKWITLAVAPFEVLPDHH--QSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYKQV 308 (1154)
Q Consensus 233 kt~~F~~t~P~sayliafaVG~F~~~~~~~--~~~v~~y~~P~~~~~--~~~t~~~~~~al~ffee~fG~~YPf~ky~~V 308 (1154)
++++|..++|||+|++||+||+|+.++... +.++++|++|+..+. .+++++.+.++++|||++||+||||+||++|
T Consensus 199 ~~~~f~~t~pmstYL~a~~vg~f~~~~~~~~~g~~~~v~~~p~~~~~~~~~~al~~~~~~l~~~e~~~~~~Yp~~k~d~v 278 (909)
T 4fke_A 199 SVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQI 278 (909)
T ss_dssp EEEEBCCCCSBCGGGCCEEEESCEEEEEECTTSCEEEEEECHHHHHTTTTHHHHHHHHHHHHHHHHHTTSCCSSSEEEEE
T ss_pred EEEEEecCCCccceeeEEEecceEEEeeccCCCcEEEEEEecchhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccEE
Confidence 999999999999999999999999887643 578999999997654 4689999999999999999999999999999
Q ss_pred EeCCCccccccccCceeeee-ccccccCcccchhhh--hhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHH
Q 001111 309 FLAPEMAVSSSTFGAAMGIF-SSQILYDEKVIDQAI--DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFI 385 (1154)
Q Consensus 309 fVp~~~~~~~~~~gagLii~-s~~LL~~~~~~d~~~--~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~ 385 (1154)
++|+...++|+++ ||++| ++.+|++++...... ....+||||+|||||||+|||+||+|+|||||||+|++++++
T Consensus 279 ~vpdf~~gaMEn~--glit~~e~~ll~d~~~s~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGFAty~e~~~~ 356 (909)
T 4fke_A 279 ALPDFNAGAMENW--GLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGA 356 (909)
T ss_dssp EETTCTTCEECCT--TEEEEEHHHHCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHH
T ss_pred EecCCCCcccccC--cccccccceeecCcccCChHHHHHHHHHHHHHHHhhhhcCeecccccCcceeehHHHHHHHHHHH
Confidence 9998767788888 67888 567889887653322 234589999999999999999999999999999999999999
Q ss_pred HHHhCChHHHHHH-HHHhhhhhhccc-CCCccccCCCccccC-CCCccccccccceeccHHHHHHHHHHHhchHHHHHHH
Q 001111 386 KKFLGNNEARYRR-YKANCAVCKADD-SGATALSSSASCKDL-YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKIL 462 (1154)
Q Consensus 386 ~~~~G~ne~r~~~-~~~~~~~~~~d~-~~~~~L~s~~s~~~l-~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L 462 (1154)
++.+|.....-.. ..........|. ....++... ..++ .+.++...|+.++|.||++|||||+..||++.|+++|
T Consensus 357 ~~~~~~~~~~~~f~~~~~~~~~~~d~~~~~~pi~~~--~~~v~~~~~i~~~fd~i~Y~KGa~vL~mL~~~lG~e~F~~gl 434 (909)
T 4fke_A 357 DHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTP--AEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGL 434 (909)
T ss_dssp HHHSTTSCGGGGHHHHTHHHHHHHHTSTTCCCSCCC--GGGCCSHHHHHTTSSHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HhccccccHHHhhhhhHHHHHHHHhhhcccCCcccc--ccccCChhhHHhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9998875431100 000111111111 111111110 0112 1234567899999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCC-----CccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeeccC
Q 001111 463 QNIISRAQGASPVRTLSTKEFRHFANKVGNLE-----RPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTV 537 (1154)
Q Consensus 463 ~~yl~~~~~~~~~~tlst~~F~~l~e~vs~~~-----g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~ 537 (1154)
+.|++++++++ ++++||...++++++.. +.++++||++|++|+|+|+++|+.+ .. .++|+|+...
T Consensus 435 ~~Yl~~~~~~n----a~~~Dl~~~l~~~s~~~~~~~~~~~v~~~~~~W~~q~G~Pvv~V~~~----~~--~~~q~~~~~~ 504 (909)
T 4fke_A 435 ASYLHAFAYQN----TTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTK----TG--NISQKHFLLD 504 (909)
T ss_dssp HHHHHHHTTEE----ECHHHHHHHHHHHHHTCSSCCCSSCHHHHHHHHHSSCSCEEEEEETT----TT--EEEEEECCSC
T ss_pred HHHHHhhcccC----CCHHHHHHHHHHHhCcccccccchhHHhHhhCccccCCCcEEEEEec----cC--cEEEEEEEec
Confidence 99999999996 78999999888876432 2469999999999999999999642 22 3667776432
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCcceeEEEEEEecCCccccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCCCCCC
Q 001111 538 KPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCD 617 (1154)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~gpmtvri~E~DGt~eh~v~~~~~~~~~~~ei~~~sK~~~rR~~k~kk~~~~~~~~ 617 (1154)
..... . ........|.+|++... +|..... .|. .+. ..
T Consensus 505 ~~~~~---~------~~~~~~~~w~IPl~~~~---~~~~~~~-------~~~-~~~---~~------------------- 542 (909)
T 4fke_A 505 SESNV---T------RSSAFDYLWIVPISSIK---NGVMQDH-------YWL-RDV---SQ------------------- 542 (909)
T ss_dssp TTCCC---C------SCCTTTTCCCEEECEEE---TTEECCC-------EEE-CSC---SE-------------------
T ss_pred cCCCC---C------CCCCCCceEEEEEEEEe---CCCccce-------EEe-ecc---cc-------------------
Confidence 21100 0 01122457999997643 2321110 000 000 00
Q ss_pred CCCCcccccccccCCCCCceEEEEcCCCcEEEEEecCCC-HHHHHHHHhhCCC
Q 001111 618 DNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDGD 669 (1154)
Q Consensus 618 ~~~d~~~~~d~~~~~~~p~~WIRiDpd~ewl~~v~~~qp-~~m~~~QL~~drD 669 (1154)
...+ + ....+-.||.++++..=..+|+.+.. ......||+.+.+
T Consensus 543 ~~~~-~-------~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~~ 587 (909)
T 4fke_A 543 AQND-L-------FKTASDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLS 587 (909)
T ss_dssp EECG-G-------GCCCTTCCEEESGGGCSSCEEEECHHHHHHHHHHHHHCGG
T ss_pred ceee-e-------ccCCCCCeEEECCCceEEEEEecCHHHHHHHHHHHHhCcc
Confidence 0000 0 00123479999999999999999864 3455677876543
No 7
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=100.00 E-value=1e-67 Score=668.65 Aligned_cols=543 Identities=15% Similarity=0.208 Sum_probs=403.6
Q ss_pred eEEEEEEEEEEEECCCcEEEEEEEEEEEeCCccEEEEEcCCceeEEEEEcCeeeeeEecCCCCccchhhhhhcccccCCC
Q 001111 19 AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPS 98 (1154)
Q Consensus 19 ~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~~~~~v~~~~ 98 (1154)
+.|.||+|+|++|+++.+|.|.|+| . .+++.|.||+++|+|.+|+++|.++.|.+.+.
T Consensus 1 v~p~hY~l~l~~~~~~~~f~G~v~I--~-~~~~~i~L~~~~l~I~~v~~~g~~~~~~~~~~------------------- 58 (780)
T 1z5h_A 1 MEVEKYDLTLDFDIQKRTFNGTETI--T-ADAGDIVLDAVGLQINWMKVNGRDTAFTYDGQ------------------- 58 (780)
T ss_dssp CCEEEEEEEEEEETTTTEEEEEEEE--E-ECSSCEEEECSSCEEEEEEETTEECCCEECSS-------------------
T ss_pred CEEEEEEEEEEEECCCCEEEEEEEE--E-cCCCEEEEEccCCEEEEEEEeceeccEEEECC-------------------
Confidence 4699999999999999999999999 4 66789999999999999999998877765421
Q ss_pred hhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeeccccccc-ceeEEEEEEEecccccceeccceE
Q 001111 99 SAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKVEVGIHFDGNAL 177 (1154)
Q Consensus 99 ~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~v~i~y~~~~p~~G~~F~~~~~ 177 (1154)
.|.|.++ + | .+++ .+.|.|.+... .|+++..|. ++++
T Consensus 59 --------------------~l~i~~~-~------g--~~~l--~i~y~g~~~~~~~G~y~~~y~-----------~~~~ 96 (780)
T 1z5h_A 59 --------------------TVRAPGD-S------Q--PQKI--EISFAGKVSDSLSGIYYAGRE-----------NGMI 96 (780)
T ss_dssp --------------------EEEECCC-S------S--SEEE--EEEEEEECBSSSSEEEEESST-----------TCEE
T ss_pred --------------------EEEEEeC-C------c--cEEE--EEEEEEEeCCCcccceecccc-----------ceEE
Confidence 3566432 1 2 2333 46777776543 366654331 4689
Q ss_pred EeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeeeecCCCCcEEEEEEeccccchhhhhhhccCeEE
Q 001111 178 HTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEV 257 (1154)
Q Consensus 178 ~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~sayliafaVG~F~~ 257 (1154)
+||+||.+||+||||+|+|+.||+|+|+|++|++|+++|||++.++ .++++++++|..++|||+|++||+||+|+.
T Consensus 97 ~Tq~ep~~AR~~fPc~DeP~~Katf~iti~~p~~~~~lSN~~~~~~----~~~g~~~~~f~~t~~mstYL~a~~vg~f~~ 172 (780)
T 1z5h_A 97 TTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRI----EVSERKVVEFQDTPRMSTYLLYVGIGKFRY 172 (780)
T ss_dssp EEECTTTCGGGTSCBCCCTTSCBEEEEEEEECTTCEEEESSCEEEE----EESSSEEEEECCCCSBCGGGCCEEEECCEE
T ss_pred EEccccCChhheeecCCCcccccEEEEEEEECCCCEEEeCCccccc----cCCCceEEEEecCCcccceEEEEEEeccEE
Confidence 9999999999999999999999999999999999999999998764 235788999999999999999999999999
Q ss_pred EecCC-CCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCceeeee-ccccccC
Q 001111 258 LPDHH-QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYD 335 (1154)
Q Consensus 258 ~~~~~-~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~gagLii~-s~~LL~~ 335 (1154)
++... +.++++|++|+ +.++++++.+.++++||+++||++|||+||++|++|+...++|+++ |+++| ++.+|++
T Consensus 173 ~~~~~~gv~~~v~~~~~--~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~--glit~~e~~ll~~ 248 (780)
T 1z5h_A 173 EYEKYRDIDLILASLKD--IRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENW--GAITFREIYMDIA 248 (780)
T ss_dssp EEEEETTEEEEEEESSC--CCCSHHHHHHHHHHHHHHHHHSSCCSSSEEEEEEETTCTTCEECCT--TEEEEEHHHHSCC
T ss_pred EeeccCCeeEEEEEccc--hhHHHHHHHHHHHHHHHHHHhCCCCCCccCCEEEcCCCCCCccccc--CeeEeecceEeec
Confidence 87643 57899999999 6778999999999999999999999999999999997555678887 57888 5568887
Q ss_pred cccchhh-hhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHH--HHHHHHHhhhhhhcccCC
Q 001111 336 EKVIDQA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA--RYRRYKANCAVCKADDSG 412 (1154)
Q Consensus 336 ~~~~d~~-~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~--r~~~~~~~~~~~~~d~~~ 412 (1154)
+...... .....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|+..+ .|.. .........|...
T Consensus 249 ~~~~~~~~~~~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfA~y~~~~~~~~~~~~~~~~~~f~~-~~~~~al~~D~~~ 327 (780)
T 1z5h_A 249 ENSAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFV-SRTSGALRSDSLK 327 (780)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHH-HTHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCcccccccHHHHHHHHHHHHHHhCCchhHHHHHHH-HHHHHHHHHhhcc
Confidence 3322221 2234689999999999999999999999999999999999999999998753 1111 1111111112110
Q ss_pred CccccCCCccccCC-CCccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhc
Q 001111 413 ATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVG 491 (1154)
Q Consensus 413 ~~~L~s~~s~~~l~-~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~tlst~~F~~l~e~vs 491 (1154)
.+.|...++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++||.+.+++++
T Consensus 328 ----~~~pi~~~v~~~~~~~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~----~t~~Dl~~~l~~~s 399 (780)
T 1z5h_A 328 ----NTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGN----AEGSDLWTAIEDVS 399 (780)
T ss_dssp ----TCCCSCCCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHHH
T ss_pred ----CCCCceecCCCHHHHHHhcchhhhhhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCC----CCHHHHHHHHHHHh
Confidence 0111111221 23455679999999999999999999999999999999999999986 79999999999987
Q ss_pred CCCCccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCCCCCcceeEEEEEEe
Q 001111 492 NLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHE 571 (1154)
Q Consensus 492 ~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpmtvri~E 571 (1154)
|.++++||++|++++|+|+++|+. + ++.++++|+|+.... .....|+.|+++ .
T Consensus 400 ---g~dl~~~~~~W~~~~G~P~l~v~~--~--~~~~~l~Q~~f~~~~-----------------~~~~~w~iPi~~-~-- 452 (780)
T 1z5h_A 400 ---GKPVKRVMEYWIKNPGYPVIKLKR--N--GRKITMYQTRFLLNG-----------------EEEGRWPVPVNI-K-- 452 (780)
T ss_dssp ---CSCHHHHHHHHHHSCSCEEEEEEE--S--SSEEEEEEEECCSSC-----------------CEECCCCEEEEE-E--
T ss_pred ---CCCHHHHHHHHHhCCCCceEEEEe--c--CcEEEEEEEEecCCC-----------------CCCceEEEEEEE-c--
Confidence 468999999999999999999987 2 345777777654210 012379999998 2
Q ss_pred cCCccccccccCCCCceEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCcccccccccCCCCCceEEEEcCCCcEEEEE
Q 001111 572 LDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEI 651 (1154)
Q Consensus 572 ~DGt~eh~v~~~~~~~~~~~ei~~~sK~~~rR~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~~WIRiDpd~ewl~~v 651 (1154)
.+|. .+ .. +. .+ . + .. ... .||.++++..-..+|
T Consensus 453 ~~~~-~~-----------~~-l~--~~----------~-------------~-~~------~~~-~~i~~N~~~~gyyrv 486 (780)
T 1z5h_A 453 KKDG-VE-----------RI-LL--ED----------E-------------A-SI------EAD-GLIKINADSAGFYRV 486 (780)
T ss_dssp ETTE-EE-----------EE-EE--CS----------S-------------E-EE------ECT-TEEEESGGGCSSSEE
T ss_pred CCCc-ee-----------ee-cc--Cc----------e-------------E-Ec------cCC-ceEEEeCCCCEEEEE
Confidence 2332 00 01 10 00 0 1 00 012 799999999999999
Q ss_pred ecCCCHHHHHHHHhh--CCCcHHH---HHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcc
Q 001111 652 HFNQPVQMWINQLEK--DGDVVAQ---AQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANT 718 (1154)
Q Consensus 652 ~~~qp~~m~~~QL~~--drDV~aQ---~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~ 718 (1154)
+.+ +..|..-+++ .=++..| +..+-+|.+....+....-.|.+.|.+|. .|.|...|...|..+
T Consensus 487 ~Yd--~~~~~~l~~~l~~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~-~~~~w~~~~~~l~~~ 555 (780)
T 1z5h_A 487 LYD--DATFSDVMGHYRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDE-DHNVITAIVGQMEYL 555 (780)
T ss_dssp ECC--HHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGTTCC-CHHHHHHHHHHHHHH
T ss_pred ECC--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHH
Confidence 887 4455543332 2477666 34444555433334333334555666653 677777776666544
No 8
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=100.00 E-value=2.9e-67 Score=648.52 Aligned_cols=452 Identities=17% Similarity=0.258 Sum_probs=350.5
Q ss_pred CCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC--CccEEEEEcCCceeEEEEEcCeeeeeEecCCCCccchhhhhhcccc
Q 001111 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP--DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMV 94 (1154)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~--~~~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~~~~~v 94 (1154)
..+++.||+|+|++|+++++|+|+|+|++.+. .++.|.||+++|+|++|+|||+++.|...... .
T Consensus 12 ~~~rv~Hy~L~l~vD~~~~~~~G~v~I~~~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~~-~------------ 78 (608)
T 3u9w_A 12 SVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGERQ-S------------ 78 (608)
T ss_dssp TTEEEEEEEEEEEEETTTTEEEEEEEEEEEECSTTEEEEEEEESSCEEEEEEETTEECCEEECCCC-G------------
T ss_pred cCCCceEEEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEEEECCEEcceeccccc-c------------
Confidence 35689999999999999999999999999873 36899999999999999999999988765320 0
Q ss_pred cCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccccceeEEEEEEEecccccceecc
Q 001111 95 SSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDG 174 (1154)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~G~~F~~ 174 (1154)
.....|.|.++.+ +..+. ...+.+.|.|.+... ++....+ ...+|. ..
T Consensus 79 --------------------~~~~~l~I~l~~~---l~~g~---~~~l~I~y~~~~~~~-~~~~~~~---~~~~g~--~~ 126 (608)
T 3u9w_A 79 --------------------YKGSPMEISLPIA---LSKNQ---EIVIEISFETSPKSS-ALQWLTP---EQTSGK--EH 126 (608)
T ss_dssp --------------------GGCEEEEEEEEEE---ECTTC---EEEEEEEEECCTTCT-TEEEECG---GGSSSS--SS
T ss_pred --------------------ccCceEEEEcCCC---CCCCC---EEEEEEEEEEEcCCC-ceeeecc---cccCCC--cc
Confidence 0012367765322 22222 233456777776543 2221111 112232 25
Q ss_pred ceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeeeecCCCCcEEEEEEeccccchhhhhhhccC
Q 001111 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (1154)
Q Consensus 175 ~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~sayliafaVG~ 254 (1154)
++++|||||.+||+||||+|+|+.||||+++|++|++++|+|||.+.++...+.++++++++|..++|||+|++||+||+
T Consensus 127 ~~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p~~~~alsng~~~~~~~~~~~~~~~~~~f~~t~pmstYL~a~~vg~ 206 (608)
T 3u9w_A 127 PYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGA 206 (608)
T ss_dssp CEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEEEETTSEEEESSEEEEEEECTTCTTEEEEEEEEEEEECGGGCCEEEES
T ss_pred eEEEEcccCCCCCEEEEecCccceeEEEEEEeeCCcceeeeeeccccceeeccCCCCeEEEEEEecCCcccEEEEEEEee
Confidence 78999999999999999999999999999999999999999999998877666678899999999999999999999999
Q ss_pred eEEEecCCCCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCC-ccccccccCceeeeeccccc
Q 001111 255 FEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPE-MAVSSSTFGAAMGIFSSQIL 333 (1154)
Q Consensus 255 F~~~~~~~~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~-~~~~~~~~gagLii~s~~LL 333 (1154)
|+..+. +..+.+|+.|+..+.+.++++.+.+++++||+++| +|||+++++|++|++ ..++|+++ |++++++.+|
T Consensus 207 f~~~~~--~~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~~g-~Yp~~~~~~vv~~p~f~~GgMEn~--gl~~~~~~~l 281 (608)
T 3u9w_A 207 LESRQI--GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP--CLTFVTPTLL 281 (608)
T ss_dssp CEEEEE--ETTEEEEECHHHHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCT--TEEEECGGGC
T ss_pred eeeEec--CCceEEEeChhhHHHHHHHHHHHHHHHHhHHhcCC-CCCchhhceeeecccccchhhhcC--cceeeeeeee
Confidence 998764 56788999999999999999999999999999998 999999999998543 34566766 5788877666
Q ss_pred cCcccchhhhhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHHHhhhhhhc-c-cC
Q 001111 334 YDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKA-D-DS 411 (1154)
Q Consensus 334 ~~~~~~d~~~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~~~~~~~~~-d-~~ 411 (1154)
..+.. ...+||||+|||||||+||++||+|+|||||||+|++++++++.+|++...+............ + ..
T Consensus 282 ~~~~~------~~~viaHElAHqWfGnlVT~~~W~d~WLnEGfAty~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (608)
T 3u9w_A 282 AGDKS------LSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFG 355 (608)
T ss_dssp CSSST------TTHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccch------hHHHHHHHhhhhhhcCcCccccccchhHHHhHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhhh
Confidence 55432 2347999999999999999999999999999999999999999999876543322211111100 0 01
Q ss_pred CCccccCCCccccCCCCccccccccceeccHHHHHHHHHHHhc-hHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHh
Q 001111 412 GATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKV 490 (1154)
Q Consensus 412 ~~~~L~s~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG-~e~F~~~L~~yl~~~~~~~~~~tlst~~F~~l~e~v 490 (1154)
...++... ..+..+.+....|+.++|.||++|||||++.|| ++.|+++|+.|++++++++ ++++||.+.++++
T Consensus 356 ~~~p~~~~--~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~~~F~~~lr~Yl~~~~~~~----~tt~Df~~~l~~~ 429 (608)
T 3u9w_A 356 ETHPFTKL--VVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDFLYSY 429 (608)
T ss_dssp TTCGGGSS--SCCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHH
T ss_pred ccCCcccc--ccccccCChhhcccHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHH
Confidence 11111110 111122223457899999999999999999998 6789999999999999996 7999999999988
Q ss_pred cCCCCccHHHH----HHHhhcCCCCceEEEEEEEeccccEEEEEEEe
Q 001111 491 GNLERPFLKEF----FPRWVGTCGCPVLRMGFSYNKRKNIVELAVLR 533 (1154)
Q Consensus 491 s~~~g~dL~~F----f~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q 533 (1154)
+ +.+++.+ |++|++++|+|.++|+++++..+..+++++++
T Consensus 430 ~---~~~~~~~~~~~~~~W~~~~G~P~v~v~~d~~~~~~~~~l~q~~ 473 (608)
T 3u9w_A 430 F---KDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRW 473 (608)
T ss_dssp T---GGGHHHHHTSCHHHHHHCCSSCSSCCCCCCTTTHHHHHHHHHH
T ss_pred h---ccccchhhHHHHHHHhcCCCCCceeeeeccccccceeeHHhHH
Confidence 7 4577777 99999999999999998877666666666544
No 9
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=100.00 E-value=1.8e-61 Score=596.60 Aligned_cols=430 Identities=19% Similarity=0.276 Sum_probs=330.2
Q ss_pred CCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC-C-ccEEEEEcCCceeEEEEE-c--C--eeeeeEecCCCCccchh
Q 001111 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-D-IGIVGLHAENLGIESVLV-D--G--EPTEFEYYPHNHQNVEN 86 (1154)
Q Consensus 14 ~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~-~~~I~L~a~~L~I~~V~V-n--g--~~~~f~~~~~~~~~~~~ 86 (1154)
+....++|.||+|+|++|+++.+|.|+|+|++.+. + ++.|.||+++|+|.+|+| | | +++.|++.+.. .
T Consensus 21 ~~p~~~~~~hy~l~l~~d~~~~~~~G~v~I~~~~~~~~~~~i~Ld~~~l~I~~v~v~~~~g~~~~~~~~~~~~~-~---- 95 (605)
T 3cia_A 21 ANYDQVKATHVYLDLNVDFDKKSLSGFAELSLDWFTDNKAPLILDTRDLVIHRVMAKNSQGQWVKVNYDLAKRD-D---- 95 (605)
T ss_dssp CCTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEECCSSCCCEEEBCSSEEEEEEEEECTTCCEEEECEEEEEEC-S----
T ss_pred cCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEEEEEcCCCCccceeEEecCcc-c----
Confidence 44468999999999999999999999999999874 3 689999999999999999 8 8 77777664320 0
Q ss_pred hhhhcccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccccceeEEEEEEEecc
Q 001111 87 EKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKV 166 (1154)
Q Consensus 87 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p 166 (1154)
.....|.|.++ . +.+++ .+.|+|.+... ++ +|+...
T Consensus 96 ----------------------------~~~~~l~i~l~-------~--~~~~l--~i~y~~~~~~~-gl----~~~~~~ 131 (605)
T 3cia_A 96 ----------------------------VLGSKLTINTP-------L--NAKKV--RVYYNSTEKAT-GL----QWLSAE 131 (605)
T ss_dssp ----------------------------SSCEEEEECCC-------T--TCSEE--EEEEEECTTCT-TE----EEECGG
T ss_pred ----------------------------cCCCeEEEEeC-------C--ceEEE--EEEEEEecCCC-ce----EEeccc
Confidence 00124666432 1 12333 46788876532 22 233211
Q ss_pred -cccceeccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeeeecCCCCcEEEEEEeccccch
Q 001111 167 -EVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (1154)
Q Consensus 167 -~~G~~F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~sa 245 (1154)
.+|. ..++++|||||.+||+||||+|+|+.||+|+++|++|++|+|+|||....+. ..++ +++|..++|||+
T Consensus 132 ~~~g~--~~~~~~Tq~ep~~AR~~fPc~D~P~~katf~i~i~~p~~~~alsng~~~~~~---~~~~--~~~f~~t~pmst 204 (605)
T 3cia_A 132 QTAGK--EKPFLFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGT---ERDG--DYFFSMPQAIPP 204 (605)
T ss_dssp GSSSS--SSCEEEECCTTTTGGGTSCBCCCTTCCEEEEEEEECCTTCEEEESSEEC-------CCS--EEEEEEEEEECG
T ss_pred ccCCC--cccEEEecCcccChhhceecCCCcCceeEEEEEEEEcCCcEEEecCCcccee---cCCC--eEEEeeCCCccc
Confidence 1231 2578999999999999999999999999999999999999999999654331 1223 789999999999
Q ss_pred hhhhhhccCeEEEecCCCCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCC-ccccccccCce
Q 001111 246 KWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPE-MAVSSSTFGAA 324 (1154)
Q Consensus 246 yliafaVG~F~~~~~~~~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~-~~~~~~~~gag 324 (1154)
|++||+||+|+.++. +.++++|++|+..+.++++++.+.+++++||++|| +|||++|++|++|++ ..++|+++ |
T Consensus 205 Yl~a~~vg~f~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~fG-~YP~~k~d~v~~p~~f~~GgMEn~--g 279 (605)
T 3cia_A 205 YLIAIGVGDLEFKAM--SHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYG-KYRWGRYDLLMLPPSFPFGGMENP--R 279 (605)
T ss_dssp GGCCEEEESCEEEES--SSSEEEEECSTTHHHHHHHSTTHHHHHHHHHHHHC-CCTTSCEEEEECCTTCSSSEECCT--T
T ss_pred eeEEEEEeeeeEecC--CCeEEEEeccChHHHHHHHHHHHHHHHHHHHHHhC-CCCCccccEEEECCccCCCcccCC--c
Confidence 999999999999875 45799999999999999999999999999999999 999999999999643 34567877 4
Q ss_pred eeeeccccccCcccchhhhhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHH---H
Q 001111 325 MGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK---A 401 (1154)
Q Consensus 325 Lii~s~~LL~~~~~~d~~~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~---~ 401 (1154)
+++.+..+|.++.. ...+||||+|||||||+|||+||+|+|||||||+|++++++++.+|+...++.... .
T Consensus 280 ltf~~~~ll~~~~~------~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~~~~~~ 353 (605)
T 3cia_A 280 LSFITPTVVAGDKS------LVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQD 353 (605)
T ss_dssp EEEECGGGCCSSSC------STHHHHHHHHHTTBTTTEEESSTTSTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEEecchhccCcHH------HHHHHHHHHHHHhhccccccCcchHhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 55556667765431 23589999999999999999999999999999999999999999998765443221 1
Q ss_pred hhhhhhcccCCCccccCCCccccCCCCccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 001111 402 NCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (1154)
Q Consensus 402 ~~~~~~~d~~~~~~L~s~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~tlst~ 481 (1154)
....+........++. .++.+.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++
T Consensus 354 l~~~l~~~~~~~~pl~-----~~~~~~~~~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~~lr~yl~~~~~~~----~t~~ 424 (605)
T 3cia_A 354 LNAEILELDASDTQLY-----IDLKGRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQS----LGTD 424 (605)
T ss_dssp HHHHHHHSCTTTTSSS-----CCCTTCCTTTSCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTTEE----ECHH
T ss_pred HHHHHHhhccCCCCcc-----cCCCCCChhHhhCccchhHHHHHHHHHHHHhChHHHHHHHHHHHHHhCcCC----CCHH
Confidence 1111110001111111 122223445678999999999999999999999999999999999999885 7999
Q ss_pred HHHHHHHHhcCCC-CccHHH-HHHHhhcCCCCceEEEEEE
Q 001111 482 EFRHFANKVGNLE-RPFLKE-FFPRWVGTCGCPVLRMGFS 519 (1154)
Q Consensus 482 ~F~~l~e~vs~~~-g~dL~~-Ff~qWv~~~G~P~l~V~~~ 519 (1154)
+|.+.++++++.. ..+++. +|++|++++|+|.+++++.
T Consensus 425 df~~~l~~~~~~~~~~~l~~~~~~~W~~~~G~P~~~~~~~ 464 (605)
T 3cia_A 425 NFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQPT 464 (605)
T ss_dssp HHHHHHHHTTTTTSTTSSCHHHHHHHHHSSSCCSSSCCCC
T ss_pred HHHHHHHHHhccccccccchhhHHHHhcCCCCCceeccCC
Confidence 9999999887420 124555 7999999999999987653
No 10
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=100.00 E-value=1.1e-61 Score=600.54 Aligned_cols=430 Identities=18% Similarity=0.258 Sum_probs=330.1
Q ss_pred CCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeC-C----ccEEEEEcCCceeEEEEEcCeeeeeEecCCCCccchhhhh
Q 001111 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-D----IGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKR 89 (1154)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~----~~~I~L~a~~L~I~~V~Vng~~~~f~~~~~~~~~~~~~~~ 89 (1154)
....++|.||+|+|++|+++.+|.|.|+|++.+. + ++.|.||+++|+|++|++||.++.|.+.+.. .
T Consensus 24 ~p~~~~~~hY~L~l~~d~~~~~~~G~v~I~~~~~~~~~~~~~~i~Ld~~~l~I~~v~v~g~~~~~~~~~~~-~------- 95 (632)
T 2xq0_A 24 NYKDFAVLHTDLNLSVSFEKSAISGSVTFQLKKLHEGKNKSDELHLDTSYLDVQEVHIDGSKADFQIEQRK-E------- 95 (632)
T ss_dssp CGGGEEEEEEEEEEEEETTTTEEEEEEEEEEEECC---CCCCEEEEBCSSEEEEEEEETTEECCEEECCCB-T-------
T ss_pred CCCceeEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCcCcEEEEEccCCEEEEEEECCeecceEEcccc-c-------
Confidence 3358999999999999999999999999999863 4 7899999999999999999998887765320 0
Q ss_pred hcccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccccceeEEEEEEEec-ccc
Q 001111 90 WRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK-VEV 168 (1154)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~-p~~ 168 (1154)
.....|.|.++.+ + +.+ .+.+.|+|.+... |+ +++.. ..+
T Consensus 96 -------------------------~~~~~l~I~l~~~------g-~~~--~l~I~Y~g~~~~~-gl----~~~~~~~~~ 136 (632)
T 2xq0_A 96 -------------------------PLGSRLVINNASC------N-DNF--TLNIQFRTTDKCT-AL----QWLNSKQTK 136 (632)
T ss_dssp -------------------------TTBCCEEEECCCS------S-SEE--EEEEEEEECTTCS-SE----EEECTTTST
T ss_pred -------------------------ccCcEEEEEecCC------C-CEE--EEEEEEeeecCcC-cc----eeecccccC
Confidence 0112478865432 1 223 3456788876542 22 22321 113
Q ss_pred cceeccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceeeeeeecCCCCcEEEEEEeccccchhhh
Q 001111 169 GIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWI 248 (1154)
Q Consensus 169 G~~F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~sayli 248 (1154)
|. .++++|||||.+||+||||+|+|+.||||+++|++| ++|++||.++.+.. . +..+++|+.++|||+|++
T Consensus 137 g~---~~~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p--~~vv~sg~~~~~~~--~--~~~~~~F~~t~pmstYLv 207 (632)
T 2xq0_A 137 GG---KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESP--LPVVFSGIRIEDTS--K--DTNIYRFEQKVPIPAYLI 207 (632)
T ss_dssp TS---SCEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEECS--SCEEESSEECCCC--------CEEEEEEEEEECGGGC
T ss_pred CC---ceEEEeccccCCcceeeeecCCcccceEEEEEEEEc--hHHhccCcccccee--c--CCCeEEEEeCCccchhhe
Confidence 31 478899999999999999999999999999999999 99999997765432 1 223799999999999999
Q ss_pred hhhccCeEEEecCCCCceEEEeCCCchhhHHHHHH-HHHHHHHHHHHhcCCCCCCCCccEEEeC-CCccccccccCceee
Q 001111 249 TLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMG 326 (1154)
Q Consensus 249 afaVG~F~~~~~~~~~~v~~y~~P~~~~~~~~t~~-~~~~al~ffee~fG~~YPf~ky~~VfVp-~~~~~~~~~~gagLi 326 (1154)
||+||+|+..+. +..+++|++|+..+.+.+++. .+.++++|||++|| +|||++|++|++| +...++|+++ |++
T Consensus 208 a~~vg~f~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~fG-pYP~~k~d~v~~pp~f~~GgMEn~--glt 282 (632)
T 2xq0_A 208 GIASGDLSSAPI--GPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIF-EYEWGTYDILVNVDSYPYGGMESP--NMT 282 (632)
T ss_dssp CEEESSCEEEEE--ETTEEEEECHHHHHHHHHHHTTTHHHHHHHHHHHSC-CCCSSCCCEEECCTTCCSSEECCT--TCE
T ss_pred eeeEecceeecc--CCeeEEEEccchHHHHHHHHHHHHHHHHHHHHHhcc-cCCcccccEEEECCCCCCCccccc--eEE
Confidence 999999999875 457999999999888889998 99999999999999 9999999999996 4334567887 466
Q ss_pred eeccccccCcccchhhhhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHHHhhhhh
Q 001111 327 IFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (1154)
Q Consensus 327 i~s~~LL~~~~~~d~~~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~~~~~~~ 406 (1154)
+.+..++.++.. ...+||||+|||||||+||++||+|+|||||||+|++++++++.+|++.+++.....+....
T Consensus 283 ~~~~~ll~~~~~------~~~viaHElAHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~~~~~~l~ 356 (632)
T 2xq0_A 283 FATPTLLAHDRS------NIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQ 356 (632)
T ss_dssp EECGGGCCSSSC------STHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EeeceeccCchh------HHHHHHHHHHHHHhcCCCccCCcchhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 567777765431 24589999999999999999999999999999999999999999998765444321111110
Q ss_pred h--cccCCCccccCCCccccCC-CCccccccccceeccHHHHHHHHHHHhch-HHHHHHHHHHHHHhcCCCCCCCCCHHH
Q 001111 407 K--ADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQGASPVRTLSTKE 482 (1154)
Q Consensus 407 ~--~d~~~~~~L~s~~s~~~l~-~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~-e~F~~~L~~yl~~~~~~~~~~tlst~~ 482 (1154)
. .......++.. ...++. +.++...|+.++|.||++|||||+..||+ +.|+++|+.|++++++++ +++++
T Consensus 357 ~~l~~~~~~~pl~~--l~~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~e~F~~~Lr~Yl~~~~~~~----~tt~D 430 (632)
T 2xq0_A 357 NSIDSMKDPERFST--LVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKS----LDTFQ 430 (632)
T ss_dssp HHHHTCSSHHHHTS--SSCCCCSSSCGGGGCSSHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTEE----ECHHH
T ss_pred HHHHhcccCCCCcc--cccCCCCCCChHHhccchhhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhCcCC----CCHHH
Confidence 0 00011111110 001121 23445678999999999999999999999 999999999999999986 79999
Q ss_pred HHHHHHHhcCCCCccHHH-HHHHhhcCCCCceEEEEE
Q 001111 483 FRHFANKVGNLERPFLKE-FFPRWVGTCGCPVLRMGF 518 (1154)
Q Consensus 483 F~~l~e~vs~~~g~dL~~-Ff~qWv~~~G~P~l~V~~ 518 (1154)
|++.++++++..+.+++. +|++|++++|+|. .+++
T Consensus 431 f~~~l~~~~~~~~~~l~~~~~~~W~~~~G~P~-~~~~ 466 (632)
T 2xq0_A 431 FLDTLYEFYPEKKEILDSVDWETWLYKPGMPP-RPHF 466 (632)
T ss_dssp HHHHHHHHCGGGHHHHHTSCHHHHHHCCSCCC-CCCC
T ss_pred HHHHHHHHhhhccccccHHHHHHHhcCCCCCC-CcCC
Confidence 999999886411246777 8999999999999 6543
No 11
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=99.87 E-value=9.1e-22 Score=240.77 Aligned_cols=315 Identities=10% Similarity=0.046 Sum_probs=188.9
Q ss_pred CEEEeeCCCCCCceEEEEEEEEcCC---cEEEecCceeeeeeecCCCCcEEEEEEeccccchhhhhhhccCeEEEecCC-
Q 001111 187 RCWFPCIDDTTQRCCYDLEFTVSQN---LIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHH- 262 (1154)
Q Consensus 187 R~wFPC~DeP~~Katf~L~ItvP~~---~~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~sayliafaVG~F~~~~~~~- 262 (1154)
.+.|..++.- ...+.+++|+.|++ |.+.+..+..+. ...+.. +|....-----.--+.+|+|+..+...
T Consensus 109 ~~~fly~~g~-~~~p~~~~i~~P~~~~~W~vaT~L~~~~~----~~~~~~--~f~a~~yd~LvDsPv~~G~~~~~~~~~~ 181 (597)
T 4fgm_A 109 TSLCLAVEGQ-TDLPCELHLHAPPEAPLWKVATGMPRKSG----QPHSWG--CFRADNYDALIDYPFLIGDLTIEEFIAH 181 (597)
T ss_dssp HHHCCEETTC-TTSCEEEEECCCTTCTTCEEEESSCBCSS----CTTSSE--EEEESSHHHHTTCCEEEESCEEEEEEET
T ss_pred hhhheeccCc-cCCcEEEEEECCCCCCcceEEecCCccCC----CCCcce--EEEcCCHHHHhcchhcccCcEEEEeccC
Confidence 3455555553 56788999999999 998777664321 111222 344321000000114678888766543
Q ss_pred CCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeC-CCccccccccCceeeeecccccc-Cc--cc
Q 001111 263 QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMGIFSSQILY-DE--KV 338 (1154)
Q Consensus 263 ~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp-~~~~~~~~~~gagLii~s~~LL~-~~--~~ 338 (1154)
+.++.+..........+..+..+.+++++++++|| +|||++|.+++.+ +...++|++.++.+++++...+. .. ..
T Consensus 182 g~p~~l~v~~~~~~d~~~~~~~~~~~~~~~~~~fG-~yP~~~Y~fl~~~~~~~~GgmEh~~st~l~~~~~~l~~~~~~~~ 260 (597)
T 4fgm_A 182 GIKHSLVLSGRHYADTSRITADLAKICETQISLFE-EAPFQSYTFLTMVVGNGFGGLEHRNSTALLCSRKDLISAHQYEM 260 (597)
T ss_dssp TEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHT-SCSCSEEEEEEEEESSCCEEEECSSEEEEEEEGGGSCCTTCCSC
T ss_pred CeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC-CCCCCceEEEEEccCCCCcccccCCceEEEeCchhccccccccc
Confidence 44555433322223457888899999999999999 9999999998643 12223444443333444322121 10 01
Q ss_pred chhhhhhHHHHHHHHHHhhcCCccccC-----------CCCcchhhhhHHHhHHHHHHHHHhCChHHHHHH--HHHhhhh
Q 001111 339 IDQAIDTSIKLSFALARQWFGVYITPE-----------LPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR--YKANCAV 405 (1154)
Q Consensus 339 ~d~~~~~~~~IaHELAHQWFGnlVt~~-----------~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~--~~~~~~~ 405 (1154)
.+.......+++||++|||||+.|+|+ +|+++||+||||+|++.+++.+.-....-.|.. ......+
T Consensus 261 ~~~~~~~~~liaHE~~H~W~g~~i~p~~~~~~d~~~~~~~~~lWl~EG~t~Y~~~l~~~r~G~~~~~~~~~~l~~~i~~~ 340 (597)
T 4fgm_A 261 NDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHTSGIIDEKRYLKLLGDTLSRV 340 (597)
T ss_dssp CHHHHHHHHHHHHHHHHTTBTTTBCBGGGSSCCCSSCCCCSTHHHHTHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred hhhhhchhhhHhhhhheeecccccccccccccccccccccccchhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 111122345899999999999888765 458999999999999999987653222222221 1222222
Q ss_pred hhcccCCCcccc-CC-CccccCCC-CccccccccceeccHHHHHHHHHHHhch-----HHHHHHHHHHHHHhcCCCCCCC
Q 001111 406 CKADDSGATALS-SS-ASCKDLYG-TQCIGIFGKIRSCKSVAILQMLEKQMGS-----NFFRKILQNIISRAQGASPVRT 477 (1154)
Q Consensus 406 ~~~d~~~~~~L~-s~-~s~~~l~~-~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~-----e~F~~~L~~yl~~~~~~~~~~t 477 (1154)
.........++. ++ ......+. .+.......-.|.||++|++||+..|++ ++|+++|+.|+.++.... ..
T Consensus 341 ~~~~gr~~~sl~~ss~~aw~~~yr~~~n~~n~~~s~Y~KGalv~~~LD~~lR~~s~g~~sldd~mr~l~~~~~~~~--~~ 418 (597)
T 4fgm_A 341 ERGAGQYQQSVTESSFLAWTKFYQQNENAPNSIVSYYAKGALIALSLDLMLRLQSDHKLTLARVMKELWHEFGKTS--IG 418 (597)
T ss_dssp HHSGGGGTCCHHHHHHTCCCCCTTCCTTHHHHCCCTTHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHTTTT--CC
T ss_pred hcCCCccccChHHcCchhhhccccCCcccCCcccccchHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhCcCC--CC
Confidence 110000001111 00 00000110 0000011123489999999999988865 589999999999886421 24
Q ss_pred CCHHHHHHHHHHhcCCCCccHHHHHHHhhcCCCCceE
Q 001111 478 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVL 514 (1154)
Q Consensus 478 lst~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l 514 (1154)
.++++|.+++++++ |.++.+||++|+++++.+.+
T Consensus 419 ~t~~d~~~~~e~~s---G~dl~~ff~~~l~~t~~~p~ 452 (597)
T 4fgm_A 419 TADDTVINWLNQYP---GIDISDFLKDALYNKESLSL 452 (597)
T ss_dssp BCTTHHHHHHHTST---TCCCHHHHHHHHHSCSCCCC
T ss_pred CCHHHHHHHHHHhc---CcCHHHHHHHHHhCCCCcch
Confidence 78999999999887 46899999999999998654
No 12
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.94 E-value=0.0066 Score=63.37 Aligned_cols=183 Identities=25% Similarity=0.245 Sum_probs=112.2
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHH
Q 001111 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (1154)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~ 736 (1154)
...++..|+ |+|...|..|+..|..... ..+...|.+.|.|+ -..||..|+.+|+++..++ .+..|++.++
T Consensus 21 ~~~L~~~L~-~~~~~vR~~A~~~L~~~~~--~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~ 91 (211)
T 3ltm_A 21 VEMYIKNLQ-DDSYYVRRAAAYALGKIGD--ERAVEPLIKALKDE--DAWVRRAAADALGQIGDER----AVEPLIKALK 91 (211)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--CHHHHHHHHHHHHHHCCGG----GHHHHHHHTT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHH----HHHHHHHHHc
Confidence 345556654 8899999999999998654 24567888888875 5789999999999887643 3666776553
Q ss_pred hccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhcc
Q 001111 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (1154)
Q Consensus 737 ~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~ 816 (1154)
. + +..|+.+...+|+.+.+ .++...|+.+|+. .|...+...+.+|+.+
T Consensus 92 ~----~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d--------~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 92 D----E--------------DGWVRQSAAVALGQIGD------ERAVEPLIKALKD--------EDWFVRIAAAFALGEI 139 (211)
T ss_dssp C----S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--------SSHHHHHHHHHHHHHH
T ss_pred C----C--------------CHHHHHHHHHHHHHhCc------HHHHHHHHHHHhC--------CCHHHHHHHHHHHHHc
Confidence 2 1 23588888888888854 3567788888841 3456788888888876
Q ss_pred ccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHHHHHHH
Q 001111 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASR 896 (1154)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~ 896 (1154)
.-. ..+..+.++++ +...-|-.+++++|.+++ . +.....+...... ....||.+|.+
T Consensus 140 ~~~--------~~~~~L~~~l~------d~~~~vr~~a~~aL~~~~----~----~~~~~~L~~~l~d-~~~~vr~~A~~ 196 (211)
T 3ltm_A 140 GDE--------RAVEPLIKALK------DEDGWVRQSAADALGEIG----G----ERVRAAMEKLAET-GTGFARKVAVN 196 (211)
T ss_dssp CCG--------GGHHHHHHHTT------CSSHHHHHHHHHHHHHHC----S----HHHHHHHHHHHHH-CCHHHHHHHHH
T ss_pred CCH--------HHHHHHHHHHc------CCCHHHHHHHHHHHHHhC----c----hhHHHHHHHHHhC-CCHHHHHHHHH
Confidence 321 12233333332 223345566666666642 1 1111112222222 22457888877
Q ss_pred Hhhcccc
Q 001111 897 ALLDLEF 903 (1154)
Q Consensus 897 ~l~~~~~ 903 (1154)
+|-.+..
T Consensus 197 aL~~~~~ 203 (211)
T 3ltm_A 197 YLETHKS 203 (211)
T ss_dssp HHHC---
T ss_pred HHHhcCC
Confidence 7777643
No 13
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.24 E-value=0.041 Score=56.76 Aligned_cols=120 Identities=27% Similarity=0.231 Sum_probs=86.5
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHh
Q 001111 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (1154)
Q Consensus 658 ~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~ 737 (1154)
+...-++-.|+|..-|..|+.+|..... ..+...|.+.|.|+ -..||..|+.+|+++..++ .+..|++....
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~~~~~~L~~~l~~~--~~~vr~~a~~~L~~~~~~~----~~~~L~~~l~d 87 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGD--ERAVEPLIKALKDE--DAWVRRAAADALGQIGDER----AVEPLIKALKD 87 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTTC
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHH----HHHHHHHHHcC
Confidence 3444445578999999999999998754 24567888999875 5779999999999987653 36677765431
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccc
Q 001111 738 RRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELE 817 (1154)
Q Consensus 738 ~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~ 817 (1154)
+ +..|+.+...+|+.+.+ +++...|+.+|+ | .|...+.+.+.+|+.+.
T Consensus 88 ----~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~--d------~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 88 ----E--------------DGWVRQSAAVALGQIGD------ERAVEPLIKALK--D------EDWFVRIAAAFALGEIG 135 (201)
T ss_dssp ----S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTT--C------SSHHHHHHHHHHHHHHT
T ss_pred ----C--------------CHHHHHHHHHHHHHhCc------HHHHHHHHHHHc--C------CCHHHHHHHHHHHHHhC
Confidence 1 23588888899988854 346777788874 1 24567888888888763
No 14
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.86 E-value=0.37 Score=52.26 Aligned_cols=213 Identities=14% Similarity=0.035 Sum_probs=134.4
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHh
Q 001111 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (1154)
Q Consensus 658 ~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~ 737 (1154)
..++..| .|.|...|..|+.+|.+.. +..+...|.+.+.|+ -+.||..|+.+|+++...... ...++..+.+
T Consensus 26 ~~L~~~L-~~~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~~~~---~~~l~~~L~~ 97 (280)
T 1oyz_A 26 DELFRLL-DDHNSLKRISSARVLQLRG--GQDAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKKC---EDNVFNILNN 97 (280)
T ss_dssp HHHHHHT-TCSSHHHHHHHHHHHHHHC--CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTTT---HHHHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHccC--CchHHHHHHHHHcCC--CHHHHHHHHHHHHHhcccccc---chHHHHHHHH
Confidence 4566666 5789999999999999875 345788899999886 468999999999998754222 2333333321
Q ss_pred cc-CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhcc
Q 001111 738 RR-FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (1154)
Q Consensus 738 ~~-~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~ 816 (1154)
.. -++ +..|+.+...||+.+...+....+++...|+.+|+. .|...+.+.+.+|+.+
T Consensus 98 ~~~~d~--------------~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d--------~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 98 MALNDK--------------SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD--------KSTNVRRATAFAISVI 155 (280)
T ss_dssp HHHHCS--------------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC--------SCHHHHHHHHHHHHTC
T ss_pred HHhcCC--------------CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC--------CCHHHHHHHHHHHHhc
Confidence 10 011 235899999999999755555567888888888852 3466888999999976
Q ss_pred ccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHHHHHHH
Q 001111 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASR 896 (1154)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~ 896 (1154)
.-. .++..+..+++ | -..-|-.+++.+|.+++. .+.--.+.+..+ .. +....||..|.+
T Consensus 156 ~~~--------~~~~~L~~~l~-d-----~~~~vr~~a~~aL~~~~~--~~~~~~~~L~~~----l~-d~~~~vR~~A~~ 214 (280)
T 1oyz_A 156 NDK--------ATIPLLINLLK-D-----PNGDVRNWAAFAININKY--DNSDIRDCFVEM----LQ-DKNEEVRIEAII 214 (280)
T ss_dssp -----------CCHHHHHHHHT-C-----SSHHHHHHHHHHHHHHTC--CCHHHHHHHHHH----TT-CSCHHHHHHHHH
T ss_pred CCH--------HHHHHHHHHHc-C-----CCHHHHHHHHHHHHhhcc--CcHHHHHHHHHH----hc-CCCHHHHHHHHH
Confidence 431 12233333333 1 223355677777766520 000001222222 22 233789999999
Q ss_pred HhhccccccCCchHHHHHHHHHhccCccchh
Q 001111 897 ALLDLEFHCNGIDSALSLFIKSVEEEPSLRG 927 (1154)
Q Consensus 897 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 927 (1154)
+|-.++ ...++..++..+.. |.+|.
T Consensus 215 aL~~~~-----~~~~~~~L~~~l~d-~~vr~ 239 (280)
T 1oyz_A 215 GLSYRK-----DKRVLSVLCDELKK-NTVYD 239 (280)
T ss_dssp HHHHTT-----CGGGHHHHHHHHTS-SSCCH
T ss_pred HHHHhC-----CHhhHHHHHHHhcC-ccHHH
Confidence 998865 24667777777754 55554
No 15
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.47 E-value=0.013 Score=56.71 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=85.7
Q ss_pred cCCCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHH
Q 001111 653 FNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLV 732 (1154)
Q Consensus 653 ~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~ 732 (1154)
..++....+.++-+|.|...|..|+.+|.+.... . +..|.+.|.|+ -+.||..|+.+|+++..++ .+..|+
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-~~~L~~~L~d~--~~~vR~~A~~aL~~~~~~~----a~~~L~ 79 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE--A-FEPLLESLSNE--DWRIRGAAAWIIGNFQDER----AVEPLI 79 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSST--T-HHHHHHGGGCS--CHHHHHHHHHHHGGGCSHH----HHHHHH
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--H-HHHHHHHHcCC--CHHHHHHHHHHHHhcCCHH----HHHHHH
Confidence 3344555556666788999999999999987543 2 48899999875 5899999999999998653 377777
Q ss_pred HHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHH
Q 001111 733 KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQS 812 (1154)
Q Consensus 733 ~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~a 812 (1154)
+..+. ++ ..|+.+...||+.+. .+++...|+.+|+ | +|...+.+.+.|
T Consensus 80 ~~L~d----~~--------------~~VR~~A~~aL~~~~------~~~a~~~L~~~l~--d------~~~~vr~~A~~a 127 (131)
T 1te4_A 80 KLLED----DS--------------GFVRSGAARSLEQIG------GERVRAAMEKLAE--T------GTGFARKVAVNY 127 (131)
T ss_dssp HHHHH----CC--------------THHHHHHHHHHHHHC------SHHHHHHHHHHTT--S------CCTHHHHHHHHH
T ss_pred HHHcC----CC--------------HHHHHHHHHHHHHhC------cHHHHHHHHHHHh--C------CCHHHHHHHHHH
Confidence 77753 11 258999999999986 3578889999995 2 245678888888
Q ss_pred hhc
Q 001111 813 VGE 815 (1154)
Q Consensus 813 L~~ 815 (1154)
|+.
T Consensus 128 L~~ 130 (131)
T 1te4_A 128 LET 130 (131)
T ss_dssp GGG
T ss_pred HHh
Confidence 875
No 16
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.20 E-value=0.17 Score=54.92 Aligned_cols=202 Identities=16% Similarity=0.062 Sum_probs=109.2
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCC---CCchhHHHHHHH-HhccCCchHHHHHHHHHHHHcccccccc--hhhHHHHHH
Q 001111 660 WINQLEKDGDVVAQAQAIAALEALP---HLSFNVVNTLNN-FLSDSKAFWRVRIEAAYALANTASEETD--WAGLLHLVK 733 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~---~~s~~~~~~L~~-~l~d~~~F~~VR~~Aa~aLa~~a~~~~~--~~g~~~L~~ 733 (1154)
.+.++-.|+|-..|..|+.+|.... .........|.+ .+.|+ -..||..|+.+|+++...... -..++.|++
T Consensus 58 ~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~--~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~ 135 (280)
T 1oyz_A 58 LAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDK--SACVRATAIESTAQRCKKNPIYSPKIVEQSQI 135 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Confidence 3444556778888888888887653 112334556654 34443 577888888888887632211 112344443
Q ss_pred HHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHh
Q 001111 734 FYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSV 813 (1154)
Q Consensus 734 ~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL 813 (1154)
..+ ++ +..|+.+...||+.+.+. ++...|+.+|+. .|...+...+.+|
T Consensus 136 ~l~----d~--------------~~~vR~~a~~aL~~~~~~------~~~~~L~~~l~d--------~~~~vr~~a~~aL 183 (280)
T 1oyz_A 136 TAF----DK--------------STNVRRATAFAISVINDK------ATIPLLINLLKD--------PNGDVRNWAAFAI 183 (280)
T ss_dssp HTT----CS--------------CHHHHHHHHHHHHTC---------CCHHHHHHHHTC--------SSHHHHHHHHHHH
T ss_pred Hhh----CC--------------CHHHHHHHHHHHHhcCCH------HHHHHHHHHHcC--------CCHHHHHHHHHHH
Confidence 322 11 235777777888777542 356667777752 2445777788888
Q ss_pred hccccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHHHH
Q 001111 814 GELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVE 893 (1154)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~ 893 (1154)
+.+... +. .++..+...++ +-..-|-..++.+|.+++ ..--.+.+...+ .+. +||..
T Consensus 184 ~~~~~~--~~----~~~~~L~~~l~------d~~~~vR~~A~~aL~~~~----~~~~~~~L~~~l---~d~----~vr~~ 240 (280)
T 1oyz_A 184 NINKYD--NS----DIRDCFVEMLQ------DKNEEVRIEAIIGLSYRK----DKRVLSVLCDEL---KKN----TVYDD 240 (280)
T ss_dssp HHHTCC--CH----HHHHHHHHHTT------CSCHHHHHHHHHHHHHTT----CGGGHHHHHHHH---TSS----SCCHH
T ss_pred HhhccC--cH----HHHHHHHHHhc------CCCHHHHHHHHHHHHHhC----CHhhHHHHHHHh---cCc----cHHHH
Confidence 765321 11 22333333332 122345556666666542 111122233332 222 28888
Q ss_pred HHHHhhccccccCCchHHHHHHHHHhccCc
Q 001111 894 ASRALLDLEFHCNGIDSALSLFIKSVEEEP 923 (1154)
Q Consensus 894 A~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 923 (1154)
|.++|-.++. ..++..+...+..++
T Consensus 241 a~~aL~~i~~-----~~~~~~L~~~l~~~~ 265 (280)
T 1oyz_A 241 IIEAAGELGD-----KTLLPVLDTMLYKFD 265 (280)
T ss_dssp HHHHHHHHCC-----GGGHHHHHHHHTTSS
T ss_pred HHHHHHhcCc-----hhhhHHHHHHHhcCC
Confidence 8888888875 255777777775543
No 17
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=94.95 E-value=0.92 Score=52.89 Aligned_cols=108 Identities=7% Similarity=-0.033 Sum_probs=57.9
Q ss_pred CCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHhhcc---cccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhh
Q 001111 798 NPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFD---RLMPSYNGILTISCIRTLTQIALKLSGFISLDQV 874 (1154)
Q Consensus 798 N~ysD~~y~a~li~aL~~~~~~~~~~~~~~~~~~ei~r~~~~D---~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~ 874 (1154)
.++.|..-+..++..++.... ...++.+.+.+..++.=+ .+-|..+.+|.+++++. .+..
T Consensus 192 ~~~~~~~lR~~~l~~ac~~g~----~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~-------------~~~~ 254 (419)
T 3rjo_A 192 GSVSERMLRSQLLLLACVHNY----QPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQS-------------TEGW 254 (419)
T ss_dssp SCHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTS-------------HHHH
T ss_pred chHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCC-------------HHHH
Confidence 567888888888888776532 234555556666666433 36677777777666542 1111
Q ss_pred hhhhccccCCCCcHHHHHHHHHHhhccccccCCchHHHHHHHHHhccCccchhh
Q 001111 875 VKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQ 928 (1154)
Q Consensus 875 ~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 928 (1154)
..++..|..... ..-|...+.+|=- .+ ....|+-+|+.+-++-.+|.+
T Consensus 255 ~~l~~~y~~s~~-~~ek~~ll~aL~~----s~-d~~ll~~~L~~~l~~~~ir~q 302 (419)
T 3rjo_A 255 DFLYSKYQFSLS-STEKSQIEFALCR----TQ-NKEKLQWLLDESFKGDKIKTQ 302 (419)
T ss_dssp HHHHHHHHHCCC-HHHHHHHHHHHTT----CS-CHHHHHHHHHHHHHTSSSCGG
T ss_pred HHHHHHHhcCCC-HHHHHHHHHHcCC----CC-CHHHHHHHHHHHhCCCCCchh
Confidence 122334444332 3446666666521 12 235566666665433223443
No 18
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.75 E-value=0.31 Score=50.40 Aligned_cols=149 Identities=25% Similarity=0.260 Sum_probs=104.8
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhcc
Q 001111 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRR 739 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~ 739 (1154)
.+.++-.|+|...|..|+.+|..... ..+...|.+.|.|+ -..||..|+.+|+++..++ .++.|+++...
T Consensus 54 ~L~~~l~~~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~d-- 123 (211)
T 3ltm_A 54 PLIKALKDEDAWVRRAAADALGQIGD--ERAVEPLIKALKDE--DGWVRQSAAVALGQIGDER----AVEPLIKALKD-- 123 (211)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTTC--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHhC--
Confidence 34445568999999999999998754 34678899999886 4689999999999998754 36677765531
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccc
Q 001111 740 FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFG 819 (1154)
Q Consensus 740 ~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~~ 819 (1154)
+ +..|+.+...||+.+.+ .++...|+.+|+ | .|..-+.+.+.+|+.+.-
T Consensus 124 --~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~--d------~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 124 --E--------------DWFVRIAAAFALGEIGD------ERAVEPLIKALK--D------EDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp --S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTT--C------SSHHHHHHHHHHHHHHCS-
T ss_pred --C--------------CHHHHHHHHHHHHHcCC------HHHHHHHHHHHc--C------CCHHHHHHHHHHHHHhCc-
Confidence 1 24589999999999954 357788888885 2 245688999999998642
Q ss_pred cccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHH
Q 001111 820 QQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (1154)
Q Consensus 820 ~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~ 862 (1154)
..++..+..+++ | + ...|-.+++++|.++.
T Consensus 173 -------~~~~~~L~~~l~-d---~--~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 173 -------ERVRAAMEKLAE-T---G--TGFARKVAVNYLETHK 202 (211)
T ss_dssp -------HHHHHHHHHHHH-H---C--CHHHHHHHHHHHHC--
T ss_pred -------hhHHHHHHHHHh-C---C--CHHHHHHHHHHHHhcC
Confidence 234444454444 2 1 2346677778777653
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.72 E-value=1.4 Score=53.55 Aligned_cols=224 Identities=16% Similarity=0.169 Sum_probs=127.7
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhC----CCCch--hHHHHHHHHhccCCchHHHHHHHHHHHHcccccccch-------hh
Q 001111 661 INQLEKDGDVVAQAQAIAALEAL----PHLSF--NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW-------AG 727 (1154)
Q Consensus 661 ~~QL~~drDV~aQ~eAi~~L~~~----~~~s~--~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~-------~g 727 (1154)
+.++-.|++..-|..|+.++.+. |..-. .....|.+.|.|+. .+||..|+.+|..++...... ..
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d--~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSN--PMVVANAVAALSEISESHPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSC--HHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCC--hhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence 45677899999999999888854 32211 24578888888864 699999999999987654321 12
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHH---HHHHHHhhccCCCCCCCchHH
Q 001111 728 LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAV---EFVLQLLKYNDNNGNPYSDVF 804 (1154)
Q Consensus 728 ~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~---~fLldll~~NDNs~N~ysD~~ 804 (1154)
+.+|++...+ + | =|+|..+.++++.+... .+.++. +.|+.+|+ ++ |.-
T Consensus 204 ~~~Ll~~l~~--~---------~-------~~~q~~il~~l~~l~~~---~~~~~~~~l~~l~~~l~---~~-----~~~ 254 (591)
T 2vgl_B 204 INKLLTALNE--C---------T-------EWGQIFILDCLSNYNPK---DDREAQSICERVTPRLS---HA-----NSA 254 (591)
T ss_dssp HHHHHHHHHH--C---------C-------HHHHHHHHHHHHTSCCC---SHHHHHHHHHHHTTCSC---SS-----TTH
T ss_pred HHHHHHcCCC--C---------C-------chHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHc---CC-----ChH
Confidence 4555555442 1 1 25677788888777532 344443 34444443 21 234
Q ss_pred HHHHHHHHhhcccc----ccccHH-HHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 001111 805 WLAALVQSVGELEF----GQQSIL-FLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIK 879 (1154)
Q Consensus 805 y~a~li~aL~~~~~----~~~~~~-~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 879 (1154)
-+.+.+.+++.+.- +.+... ...++..-+-.++ -+-. -|-..+|++|.++....-..+. ..+..+
T Consensus 255 V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~------~~d~-~vr~~aL~~l~~i~~~~p~~~~-~~~~~~-- 324 (591)
T 2vgl_B 255 VVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL------SGEP-EVQYVALRNINLIVQKRPEILK-QEIKVF-- 324 (591)
T ss_dssp HHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT------TSCH-HHHHHHHHHHHHHHHHCCSTTT-TCTTTT--
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh------cCCc-cHHHHHHHHHHHHHHhChHHHH-HHHHhh--
Confidence 66677777776532 111111 1122222222222 1333 4455677888877643222211 111111
Q ss_pred cccCCCCcHHHHHHHHHHhhccccccCCchHHHHHHHHHhcc-Cccchh
Q 001111 880 PFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRG 927 (1154)
Q Consensus 880 ~y~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 927 (1154)
+...+.+..||..|++.|..+.- ..+.+.++.-+++++.. |+.+|.
T Consensus 325 -~~~~~d~~~Ir~~al~~L~~l~~-~~nv~~iv~~L~~~l~~~d~~~r~ 371 (591)
T 2vgl_B 325 -FVKYNDPIYVKLEKLDIMIRLAS-QANIAQVLAELKEYATEVDVDFVR 371 (591)
T ss_dssp -SCCTTSCHHHHHHHHHHHHHTCC-SSTHHHHHHHHHHHTTSSCHHHHH
T ss_pred -eeccCChHHHHHHHHHHHHHHCC-hhhHHHHHHHHHHHHhcCCHHHHH
Confidence 12223448999999999998763 34555677777777754 555554
No 20
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.59 E-value=0.3 Score=50.16 Aligned_cols=116 Identities=29% Similarity=0.321 Sum_probs=88.7
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhccC
Q 001111 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (1154)
Q Consensus 661 ~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~~ 740 (1154)
+.++-.|+|...|..|+.+|...... .+...|.+.|.|+ -..||..|+.+|+++..++ ....|+++...
T Consensus 50 L~~~l~~~~~~vr~~a~~~L~~~~~~--~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~d--- 118 (201)
T 3ltj_A 50 LIKALKDEDAWVRRAAADALGQIGDE--RAVEPLIKALKDE--DGWVRQSAAVALGQIGDER----AVEPLIKALKD--- 118 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCG--GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTTC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhCCH--HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHcC---
Confidence 33444789999999999999987543 4678899999885 5789999999999988754 36667665531
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhcc
Q 001111 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (1154)
Q Consensus 741 ~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~ 816 (1154)
+ +..|+.+...+++.+.+ .++...|+.+|+ | .|..-+.+.+.+|+.+
T Consensus 119 -~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~--d------~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 119 -E--------------DWFVRIAAAFALGEIGD------ERAVEPLIKALK--D------EDGWVRQSAADALGEI 165 (201)
T ss_dssp -S--------------SHHHHHHHHHHHHHHTC------GGGHHHHHHHTT--C------SSHHHHHHHHHHHHHH
T ss_pred -C--------------CHHHHHHHHHHHHHhCC------HHHHHHHHHHHc--C------CCHHHHHHHHHHHHHh
Confidence 1 24589999999999964 357778888886 2 2567889999999976
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=93.45 E-value=1.9 Score=52.39 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=120.6
Q ss_pred hCCCcHHHHHHHHHHHhCCCCc--hhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhccCCCC
Q 001111 666 KDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDEN 743 (1154)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~~~s--~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~~~~~ 743 (1154)
+|+|..-|.-|+++|....... ......|.+.+.|+ -..||..||.||.++.....+-.--..++....+...+++
T Consensus 96 ~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d 173 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSN 173 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSC
T ss_pred CCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCC
Confidence 4678888899999999874322 22344588888875 5689999999999987532221111134455555433432
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCC-----hHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhcccc
Q 001111 744 IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (1154)
Q Consensus 744 ~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~-----p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~ 818 (1154)
..|+.+-..|+..+...+... ...+..-|+..|.. .|.|....++++|+....
T Consensus 174 --------------~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~--------~~~~~q~~il~~l~~l~~ 231 (591)
T 2vgl_B 174 --------------PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE--------CTEWGQIFILDCLSNYNP 231 (591)
T ss_dssp --------------HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHTSCC
T ss_pred --------------hhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC--------CCchHHHHHHHHHHHhCC
Confidence 358888899999987655421 23445556666642 356788899999987653
Q ss_pred ccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCc-----hh----hhhhhhccccCCCCcHH
Q 001111 819 GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-----LD----QVVKLIKPFRDFNTIWQ 889 (1154)
Q Consensus 819 ~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~-----~~----~~~~~~~~y~~~~~~~~ 889 (1154)
. +......+++-+.. ++-+-+..|-.+|.+++..+. ..++ .. .+...+..... ....
T Consensus 232 ~--~~~~~~~~l~~l~~------~l~~~~~~V~~ea~~~i~~l~----~~~~~~~~~~~~~~~~~~~~L~~L~~--~d~~ 297 (591)
T 2vgl_B 232 K--DDREAQSICERVTP------RLSHANSAVVLSAVKVLMKFL----ELLPKDSDYYNMLLKKLAPPLVTLLS--GEPE 297 (591)
T ss_dssp C--SHHHHHHHHHHHTT------CSCSSTTHHHHHHHHHHHHSC----CSCCBTTBSHHHHHHHTHHHHHHHTT--SCHH
T ss_pred C--ChHHHHHHHHHHHH------HHcCCChHHHHHHHHHHHHHh----hccCCCHHHHHHHHHHHHHHHHHHhc--CCcc
Confidence 2 22334445444432 233456677788888888752 1120 00 11000001112 3468
Q ss_pred HHHHHHHHhhccccc
Q 001111 890 VRVEASRALLDLEFH 904 (1154)
Q Consensus 890 vR~~A~~~l~~~~~~ 904 (1154)
||..|+++|..+...
T Consensus 298 vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 298 VQYVALRNINLIVQK 312 (591)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887543
No 22
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=92.78 E-value=0.63 Score=55.59 Aligned_cols=285 Identities=14% Similarity=0.099 Sum_probs=142.6
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhC----CCC------chhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHH
Q 001111 660 WINQLEKDGDVVAQAQAIAALEAL----PHL------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLL 729 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~----~~~------s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~ 729 (1154)
...++-+|.+..-|..|+.+|... +.. ...+...|.+.+.|+ -|.||..|+.+|+.++..-..-.-..
T Consensus 285 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~ 362 (588)
T 1b3u_A 285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--NQHVKSALASVIMGLSPILGKDNTIE 362 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHHHHHHTTGGGGHHHHCHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 344555788888888888777653 111 122445666777774 68999999999999874211101123
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCC--hHHHHHHHHHHhhccCCCCCCCchHHHHH
Q 001111 730 HLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS--PREAVEFVLQLLKYNDNNGNPYSDVFWLA 807 (1154)
Q Consensus 730 ~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~--p~~v~~fLldll~~NDNs~N~ysD~~y~a 807 (1154)
+++..|....-+++ --|+.+...+++.+-..-|.. ...+...|..+++ | .+-..+.
T Consensus 363 ~l~p~l~~~l~d~~--------------~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~--d------~~~~vr~ 420 (588)
T 1b3u_A 363 HLLPLFLAQLKDEC--------------PEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE--D------AKWRVRL 420 (588)
T ss_dssp HTHHHHHHHHTCSC--------------HHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT--C------SSHHHHH
T ss_pred HHHHHHHHHhCCCc--------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc--C------CCchHHH
Confidence 44444443221211 237777777777665443321 1334455555543 1 2233566
Q ss_pred HHHHHhhcccc--ccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCC
Q 001111 808 ALVQSVGELEF--GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFN 885 (1154)
Q Consensus 808 ~li~aL~~~~~--~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~ 885 (1154)
+++++|+.+.- +.+ .+...++.-+.++++ | -..-|-.+++.++..+........-.+.+...+..... +
T Consensus 421 ~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~-d-----~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-~ 491 (588)
T 1b3u_A 421 AIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLV-D-----HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSG-D 491 (588)
T ss_dssp HHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGG-C-----SSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTT-C
T ss_pred HHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhc-C-----CcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhh-C
Confidence 77777775421 111 112334555555443 2 12345556666666664322110001222222222222 3
Q ss_pred CcHHHHHHHHHHhhccccccCCc---hHHHHHHHHHhccCccchhhhhHHHHHhhhhhhccCCCCCCCCChHHHHHHHHH
Q 001111 886 TIWQVRVEASRALLDLEFHCNGI---DSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNL 962 (1154)
Q Consensus 886 ~~~~vR~~A~~~l~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 962 (1154)
....+|.+|.+++-.+....+.. ..++..++..+ .|+.+..+.....-.-.++.. .+. ..-.+.+...+..
T Consensus 492 ~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~-~~~----~~~~~~~~p~l~~ 565 (588)
T 1b3u_A 492 PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA-GDPVANVRFNVAKSLQKIGPI-LDN----STLQSEVKPILEK 565 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGG-GCSCHHHHHHHHHHHHHHGGG-SCH----HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHHHHHHH-hch----hhhHHHHHHHHHH
Confidence 45789999999998875432211 12344444443 355544433222222222211 111 1112455554544
Q ss_pred HhccccccchhhHhhHHHHHHHhh
Q 001111 963 LESRIAFNNVFLRHHLFGILQILA 986 (1154)
Q Consensus 963 ~~~~~~~~~~~lr~~~~~~~~~l~ 986 (1154)
+.+ -.|...|..+...+..|.
T Consensus 566 l~~---d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 566 LTQ---DQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HTT---CSSHHHHHHHHHHHHHTT
T ss_pred HcC---CCchhHHHHHHHHHHHhh
Confidence 433 347889988888776654
No 23
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.91 E-value=1.2 Score=54.55 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=75.1
Q ss_pred hCCCcHHHHHHHHHHHhCCCC--chhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhccCCCC
Q 001111 666 KDGDVVAQAQAIAALEALPHL--SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDEN 743 (1154)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~~~--s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~~~~~ 743 (1154)
+|++-.-|..|+++|...... .......+.+.|.|++ --||..||.||.++....++. +..++...++.-++
T Consensus 117 ~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~--~~VRk~A~~al~~l~~~~p~~--v~~~~~~l~~lL~D-- 190 (618)
T 1w63_A 117 NHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSN--SYLRKKAALCAVHVIRKVPEL--MEMFLPATKNLLNE-- 190 (618)
T ss_dssp SCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCC--HHHHHHHHHHHHHHHHHCGGG--GGGGGGGTTTSTTC--
T ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHChHH--HHHHHHHHHHHhCC--
Confidence 468888899999999986532 1123567888888865 579999999999886532211 11111111111111
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChH---HHHHHHHHHhh----ccCCCCCCC---chHHHHHHHHHHh
Q 001111 744 IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR---EAVEFVLQLLK----YNDNNGNPY---SDVFWLAALVQSV 813 (1154)
Q Consensus 744 ~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~---~v~~fLldll~----~NDNs~N~y---sD~~y~a~li~aL 813 (1154)
.+..|+-+...++..+...+..... .+..-|+.+|+ -+.+..-.| .|.|....++++|
T Consensus 191 ------------~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L 258 (618)
T 1w63_A 191 ------------KNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLL 258 (618)
T ss_dssp ------------CCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHH
T ss_pred ------------CCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHH
Confidence 2245777777777777543210000 11222444443 122222222 3788888888888
Q ss_pred hcccc
Q 001111 814 GELEF 818 (1154)
Q Consensus 814 ~~~~~ 818 (1154)
+....
T Consensus 259 ~~l~~ 263 (618)
T 1w63_A 259 RILGR 263 (618)
T ss_dssp HHHTT
T ss_pred HHhCC
Confidence 87543
No 24
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=91.36 E-value=2 Score=51.25 Aligned_cols=212 Identities=15% Similarity=0.088 Sum_probs=118.8
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhCCCC------chhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccch----hhHHH
Q 001111 661 INQLEKDGDVVAQAQAIAALEALPHL------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW----AGLLH 730 (1154)
Q Consensus 661 ~~QL~~drDV~aQ~eAi~~L~~~~~~------s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~----~g~~~ 730 (1154)
+.++..|++-..|..|++.|...-.. .......|.+.+.|+ -+.||..|+.+|+.++.....- .-+..
T Consensus 247 l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 324 (588)
T 1b3u_A 247 LRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMSQ 324 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHT
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHhChhhhhhHHHHH
Confidence 44566788888888888887754110 012455677778775 5789999999999887532111 11334
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCC--hHHHHHHHHHHhhccCCCCCCCchHHHHHH
Q 001111 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS--PREAVEFVLQLLKYNDNNGNPYSDVFWLAA 808 (1154)
Q Consensus 731 L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~--p~~v~~fLldll~~NDNs~N~ysD~~y~a~ 808 (1154)
++..+.+..-+ .+..|+++...+++.+-..-|.. ...+...|+.+|+ | .|...+.+
T Consensus 325 l~p~l~~~l~d--------------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~--d------~~~~Vr~~ 382 (588)
T 1b3u_A 325 ILPCIKELVSD--------------ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK--D------ECPEVRLN 382 (588)
T ss_dssp HHHHHHHHHTC--------------SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT--C------SCHHHHHH
T ss_pred HHHHHHHHhcC--------------CCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC--C------CchHHHHH
Confidence 44444432111 12458888888887764332321 2345666777775 2 13457778
Q ss_pred HHHHhhccccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcH
Q 001111 809 LVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIW 888 (1154)
Q Consensus 809 li~aL~~~~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~ 888 (1154)
.+++|+.+.-..........++..|..+++-+ +.-+-.++++++..++..+....-.+.+...+..... +...
T Consensus 383 a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~ 455 (588)
T 1b3u_A 383 IISNLDCVNEVIGIRQLSQSLLPAIVELAEDA------KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-DHVY 455 (588)
T ss_dssp HHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCS------SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-CSSH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc-CCcH
Confidence 88888765321111123345666666554322 2234455666666665433222111223233333222 3347
Q ss_pred HHHHHHHHHhhcccc
Q 001111 889 QVRVEASRALLDLEF 903 (1154)
Q Consensus 889 ~vR~~A~~~l~~~~~ 903 (1154)
.||.+|.++|-.+..
T Consensus 456 ~Vr~~a~~~l~~l~~ 470 (588)
T 1b3u_A 456 AIREAATSNLKKLVE 470 (588)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999988754
No 25
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=91.00 E-value=2 Score=44.94 Aligned_cols=166 Identities=24% Similarity=0.266 Sum_probs=103.4
Q ss_pred HHhhCCCcHHHHHHHHHHHhCCCCch---------hHHHHHHHHhccCCchHHHHHHHHHHHHccccccc-------chh
Q 001111 663 QLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-------DWA 726 (1154)
Q Consensus 663 QL~~drDV~aQ~eAi~~L~~~~~~s~---------~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~-------~~~ 726 (1154)
++-++.|...|.+|+.+|......+. .++..|.+.|.++. -.||..|+.+|+.++.... ...
T Consensus 9 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 86 (252)
T 4hxt_A 9 KLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPDEAIKAIVDAG 86 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCChHHHHHHHHCC
Confidence 33456778889999999886533222 25667888888764 8999999999999886421 113
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChH-----HHHHHHHHHhhccCCCCCCCc
Q 001111 727 GLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYNDNNGNPYS 801 (1154)
Q Consensus 727 g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~-----~v~~fLldll~~NDNs~N~ys 801 (1154)
|++.|++..+. + +--++.....+|+.+-..+...-. .+...|+++|+. +
T Consensus 87 ~i~~l~~ll~~----~--------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--------~ 140 (252)
T 4hxt_A 87 GVEVLVKLLTS----T--------------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--------T 140 (252)
T ss_dssp HHHHHHHHTTC----S--------------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--------S
T ss_pred CHHHHHHHHcC----C--------------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--------C
Confidence 56777766552 1 124777777888877532211111 356778888873 2
Q ss_pred hHHHHHHHHHHhhccccccccH--HHH-HHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHH
Q 001111 802 DVFWLAALVQSVGELEFGQQSI--LFL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (1154)
Q Consensus 802 D~~y~a~li~aL~~~~~~~~~~--~~~-~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~ 862 (1154)
|.-.+...+.+|+++..+.+.. .+. ..++..+..++. +-..-+...|+.+|.+++
T Consensus 141 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT------STDSEVQKEAARALANIA 198 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC------CCCHHHHHHHHHHHHHHH
Confidence 3457888888999876543211 111 125566666655 223456667777777764
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=90.36 E-value=2 Score=45.22 Aligned_cols=174 Identities=21% Similarity=0.201 Sum_probs=107.5
Q ss_pred CCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCc---------hhHHHHHHHHhccCCchHHHHHHHHHHHHccccccc--
Q 001111 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLS---------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 723 (1154)
Q Consensus 655 qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s---------~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~-- 723 (1154)
.++|.+...+-++.|...|.+|+..|.+.-..+ ..++..|.+.|.++. ..||.+|+.+|+.++....
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHH
Confidence 445677777778899999999999995421000 014567888888765 8999999999999886321
Q ss_pred -----chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCC-----hHHHHHHHHHHhhcc
Q 001111 724 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYN 793 (1154)
Q Consensus 724 -----~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~-----p~~v~~fLldll~~N 793 (1154)
...|++.|++..+. + | --+++....+|+.+-..+... -..+...|+++|+..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~----~-------~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 150 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSS----P-------N-------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGC----S-------C-------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHcCCHHHHHHHHcC----C-------C-------HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC
Confidence 12356777766653 1 1 247787788888774322111 012667888999621
Q ss_pred CCCCCCCchHHHHHHHHHHhhccccccccH-H-HH-HHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHH
Q 001111 794 DNNGNPYSDVFWLAALVQSVGELEFGQQSI-L-FL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (1154)
Q Consensus 794 DNs~N~ysD~~y~a~li~aL~~~~~~~~~~-~-~~-~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~ 862 (1154)
|.-.+...+.+|+++..+.... . .. ..++..+-++++- -..-+...|+.+|..++
T Consensus 151 --------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 151 --------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIA 208 (252)
T ss_dssp --------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC------SSHHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC------CCHHHHHHHHHHHHHHh
Confidence 4567888888998876533211 1 11 1244555555542 23445566667777663
No 27
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=89.41 E-value=1.5 Score=53.97 Aligned_cols=285 Identities=12% Similarity=0.106 Sum_probs=147.5
Q ss_pred CCCcHHHHHHHHHHHhCCCCc--hhHHHHHHHHh--ccCCchHHHHHHHHHHHHcccccccchh---h-HHHHHHHHHhc
Q 001111 667 DGDVVAQAQAIAALEALPHLS--FNVVNTLNNFL--SDSKAFWRVRIEAAYALANTASEETDWA---G-LLHLVKFYKSR 738 (1154)
Q Consensus 667 drDV~aQ~eAi~~L~~~~~~s--~~~~~~L~~~l--~d~~~F~~VR~~Aa~aLa~~a~~~~~~~---g-~~~L~~~f~~~ 738 (1154)
|++-.-|--|+++|.....+. ..+...+.++| .|. ---||..||.||.++.....+-. + +..|.++.
T Consensus 122 ~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL--- 196 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLL--- 196 (621)
T ss_dssp SCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHT---
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHh---
Confidence 677788889999999764322 12334566777 554 45699999999998764322111 1 22332222
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCC----ChHHHHHHHHHHhhccCCCCCC-----CchHHHHHHH
Q 001111 739 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----SPREAVEFVLQLLKYNDNNGNP-----YSDVFWLAAL 809 (1154)
Q Consensus 739 ~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~----~p~~v~~fLldll~~NDNs~N~-----ysD~~y~a~l 809 (1154)
.+++ ..|+.+...++..+...+.. .-+-+.+.|-.++.-++.+... -.|.|-...+
T Consensus 197 -~d~d--------------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i 261 (621)
T 2vgl_A 197 -NDQH--------------LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL 261 (621)
T ss_dssp -TCSC--------------HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred -CCCC--------------ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence 2322 35777777777777654421 1222444555555433222112 2378899999
Q ss_pred HHHhhccccccccHHHHHHHHHHHHHHhhc-ccccC-----CCCc---HhHHHHHHHHHHHHHHhcCCCc-hhhhhhhhc
Q 001111 810 VQSVGELEFGQQSILFLSSLLKRIDRLLQF-DRLMP-----SYNG---ILTISCIRTLTQIALKLSGFIS-LDQVVKLIK 879 (1154)
Q Consensus 810 i~aL~~~~~~~~~~~~~~~~~~ei~r~~~~-D~~~p-----Sy~~---vvt~~~l~~l~~l~~~~~~~~~-~~~~~~~~~ 879 (1154)
++.|+..... ++....+.+.+-++++++. ++ .| .+.| .|...|.+++..+. ..-+ .......+.
T Consensus 262 l~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~-~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~~~~~~L~ 335 (621)
T 2vgl_A 262 LRLLQCYPPP-EDPAVRGRLTECLETILNKAQE-PPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLVRACNQLG 335 (621)
T ss_dssp HHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHS-CCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhcc-CcccccccccchHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHH
Confidence 9999986532 1223334455555555532 11 12 2323 67788988887752 1101 011112222
Q ss_pred cccCCCCcHHHHHHHHHHhhccccccCCch---HHHHHHHHHhccCccchhhhhHHHHHhhhhhhccCCCCCCCCChHHH
Q 001111 880 PFRDFNTIWQVRVEASRALLDLEFHCNGID---SALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTL 956 (1154)
Q Consensus 880 ~y~~~~~~~~vR~~A~~~l~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l 956 (1154)
.+.. ..-..+|..|+++|..+.......+ .....++..+..|+....+.+-.-.+..++. . + +-..+
T Consensus 336 ~~L~-~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~----~-~----Nv~~I 405 (621)
T 2vgl_A 336 QFLQ-HRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD----R-S----NAQQI 405 (621)
T ss_dssp HHSS-CSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC----H-H----HHHHH
T ss_pred HHhc-CCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC----h-h----hHHHH
Confidence 2322 2336899999999999864432111 1233455555534443332211111222210 0 0 22344
Q ss_pred HHHHHHHhccccccchhhHhhHHHHHHHhhcCCc
Q 001111 957 VALLNLLESRIAFNNVFLRHHLFGILQILAGRAP 990 (1154)
Q Consensus 957 ~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~~~~~ 990 (1154)
+..+..... ..|...|..++..+-.++-+|+
T Consensus 406 v~eL~~yl~---~~d~~~~~~~v~~I~~la~k~~ 436 (621)
T 2vgl_A 406 VAEMLSYLE---TADYSIREEIVLKVAILAEKYA 436 (621)
T ss_dssp HHHHHHHHH---HCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcC
Confidence 443322222 2467777777777777777665
No 28
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=89.08 E-value=0.69 Score=44.28 Aligned_cols=86 Identities=16% Similarity=0.057 Sum_probs=64.0
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhcc
Q 001111 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRR 739 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~ 739 (1154)
.+.++-.|+|...|..|+.+|..... ..++..|.+.|.|+ -+.||.+|+.+|+++..++ .++.|++..+.
T Consensus 46 ~L~~~L~d~~~~vR~~A~~aL~~~~~--~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~~~----a~~~L~~~l~d-- 115 (131)
T 1te4_A 46 PLLESLSNEDWRIRGAAAWIIGNFQD--ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGGER----VRAAMEKLAET-- 115 (131)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHGGGCS--HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCSHH----HHHHHHHHTTS--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHhC--
Confidence 34455568999999999999998753 45778899999885 5799999999999988543 36666665531
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhh
Q 001111 740 FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV 771 (1154)
Q Consensus 740 ~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~v 771 (1154)
+ +..|+.+...||+.|
T Consensus 116 --~--------------~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 116 --G--------------TGFARKVAVNYLETH 131 (131)
T ss_dssp --C--------------CTHHHHHHHHHGGGC
T ss_pred --C--------------CHHHHHHHHHHHHhC
Confidence 1 125788888887754
No 29
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=88.83 E-value=4.7 Score=49.29 Aligned_cols=229 Identities=12% Similarity=0.066 Sum_probs=125.6
Q ss_pred hCCCcHHHHHHHHHHHhCCCCchh----HHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhccCC
Q 001111 666 KDGDVVAQAQAIAALEALPHLSFN----VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFD 741 (1154)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~~~s~~----~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~~~ 741 (1154)
.++|-.-|+-|+.+|.......+. ....+..++.|+. --||..|...|.++.++.+--.=+..|++++.+
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d--~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~---- 396 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLD--VSIKRRAMELSFALVNGNNIRGMMKELLYFLDS---- 396 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSC--HHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH----
T ss_pred hCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCC--hhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh----
Confidence 457778888888888764221111 1235667778765 359999999999999875421124455555443
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccc
Q 001111 742 ENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQ 821 (1154)
Q Consensus 742 ~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~~~~ 821 (1154)
.++-++..+..+|+.+=.........+...|+++|+..+ +... ..++.++.++....+
T Consensus 397 --------------~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~---~~v~-----~~~~~~l~~ii~~~p 454 (618)
T 1w63_A 397 --------------CEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG---SYVR-----DDAVPNLIQLITNSV 454 (618)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG---GGSC-----SSHHHHHHHHHHHSC
T ss_pred --------------CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc---chhH-----HHHHHHHHHHHhcCh
Confidence 023466778888888865544556778888999998443 2222 223333333211111
Q ss_pred cHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcC---------CCchhhhhhhhcccc-CCCCcHHHH
Q 001111 822 SILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG---------FISLDQVVKLIKPFR-DFNTIWQVR 891 (1154)
Q Consensus 822 ~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~---------~~~~~~~~~~~~~y~-~~~~~~~vR 891 (1154)
+ .-..++..+-.++.-|. .+..++ .+++-.+.+.+..... .+....+..++..+. .+.....||
T Consensus 455 ~--l~~~~v~~L~~~l~~~~---~~~~~~-~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr 528 (618)
T 1w63_A 455 E--MHAYTVQRLYKAILGDY---SQQPLV-QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTR 528 (618)
T ss_dssp S--THHHHHHHHHHHHHHCC---SCSHHH-HHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHH
T ss_pred h--HHHHHHHHHHHHHhccc---ccHHHH-HHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 1 12334555555554432 234444 3567777776533321 011111222222211 113357899
Q ss_pred HHHHHHhhccccccCCchHHHHHHHHHhccC--ccchhh
Q 001111 892 VEASRALLDLEFHCNGIDSALSLFIKSVEEE--PSLRGQ 928 (1154)
Q Consensus 892 ~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~ 928 (1154)
..++.+++.+..+.....+.+.-+|.....| +.+|.|
T Consensus 529 ~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~~d~evrdR 567 (618)
T 1w63_A 529 GYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQR 567 (618)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999998776655445555555544443 344443
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=85.86 E-value=6.2 Score=46.69 Aligned_cols=226 Identities=19% Similarity=0.185 Sum_probs=129.4
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCC----Cch------hHHHHHHHHhccCCchHHHHHHHHHHHHcccccccc--
Q 001111 657 VQMWINQLEKDGDVVAQAQAIAALEALPH----LSF------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD-- 724 (1154)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~----~s~------~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~-- 724 (1154)
--..+..|. +.|...|.+|+.+|.+.-+ ... .++..|.+.|.+.. ...||.+||.+|++++.....
T Consensus 76 l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED-FPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHH
Confidence 455666674 5699999999999976411 111 14566888887642 479999999999998874211
Q ss_pred -----hhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChH-----HHHHHHHHHhhccC
Q 001111 725 -----WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYND 794 (1154)
Q Consensus 725 -----~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~-----~v~~fLldll~~ND 794 (1154)
..+++.|++..+. ++ --|+.....||+.+-..+..+.. .+...|+.+|+.
T Consensus 154 ~~~~~~g~i~~L~~lL~~----~~--------------~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~-- 213 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGS----SS--------------DDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE-- 213 (528)
T ss_dssp HHHHHTTHHHHHHHHTTC----SC--------------HHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT--
T ss_pred HHHHhCCcHHHHHHHhcC----CC--------------HHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc--
Confidence 1356777766642 11 14777777888877422111111 145567778752
Q ss_pred CCCCCCchHHHHHHHHHHhhcccccc--ccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHH--------
Q 001111 795 NNGNPYSDVFWLAALVQSVGELEFGQ--QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK-------- 864 (1154)
Q Consensus 795 Ns~N~ysD~~y~a~li~aL~~~~~~~--~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~-------- 864 (1154)
..|.-.+...+.+|+++..+. ........++..+.++++-+ ..-+-..|+.+|..|+..
T Consensus 214 -----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~ 282 (528)
T 4b8j_A 214 -----HTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN------DEEVLTDACWALSYLSDGTNDKIQAV 282 (528)
T ss_dssp -----TCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC------CHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 135567777888888764432 22233445666666666422 233445566666665310
Q ss_pred -hcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccCCc------hHHHHHHHHHhccC
Q 001111 865 -LSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEEE 922 (1154)
Q Consensus 865 -~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~------~~~l~~~~~~~~~~ 922 (1154)
-.|.+ +.+..++ ..+ ...||..|+.+|-.+....... ..++..++..+...
T Consensus 283 ~~~g~v--~~Lv~lL----~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 283 IEAGVC--PRLVELL----LHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp HHTTCH--HHHHHHT----TCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred HHcCHH--HHHHHHH----cCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 01211 1232332 112 3689999999998775421100 12466777777543
No 31
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=84.76 E-value=13 Score=42.38 Aligned_cols=227 Identities=17% Similarity=0.191 Sum_probs=129.6
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCc---------hhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccc------
Q 001111 660 WINQLEKDGDVVAQAQAIAALEALPHLS---------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD------ 724 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s---------~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~------ 724 (1154)
.+..|+.+.+...|.+|+..|......+ ..++..|.+.|.++ -..||..|+.+|+.++.....
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3444544448899999999988653221 12566788888774 579999999999998864321
Q ss_pred -hhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCC-----hHHHHHHHHHHhhccCCCCC
Q 001111 725 -WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNGN 798 (1154)
Q Consensus 725 -~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~-----p~~v~~fLldll~~NDNs~N 798 (1154)
..+++.|++..+. + .+--+++....+++.+-...+.. -..+...|+++|+.
T Consensus 147 ~~~~i~~L~~~l~~---~--------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~------ 203 (450)
T 2jdq_A 147 DCNILPPLLQLFSK---Q--------------NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV------ 203 (450)
T ss_dssp HTTCHHHHHHHTTS---C--------------CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC------
T ss_pred HCCCHHHHHHHhcC---C--------------CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc------
Confidence 1346777766642 0 11247777888888775332111 14577888999873
Q ss_pred CCchHHHHHHHHHHhhcccccccc-HH-HH-HHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHH---------hc
Q 001111 799 PYSDVFWLAALVQSVGELEFGQQS-IL-FL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---------LS 866 (1154)
Q Consensus 799 ~ysD~~y~a~li~aL~~~~~~~~~-~~-~~-~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~---------~~ 866 (1154)
.|.--+...+.+|+++...... .. .. ..++..+-.++.- -..-+...|+.+|..++.. -.
T Consensus 204 --~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 275 (450)
T 2jdq_A 204 --SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH------NDYKVVSPALRAVGNIVTGDDIQTQVILNC 275 (450)
T ss_dssp --CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC------CchhHHHHHHHHHHHHhhCChHHHHHHHHC
Confidence 2445677778888876443211 11 11 1245555555542 1234556677777776420 00
Q ss_pred CCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccC-Cc-----hHHHHHHHHHhcc-Cccch
Q 001111 867 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN-GI-----DSALSLFIKSVEE-EPSLR 926 (1154)
Q Consensus 867 ~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~-~~-----~~~l~~~~~~~~~-~~~~~ 926 (1154)
|.+ +.+..++ .. ....+|.+|..+|-.+..... .. ..++..++..+.. ++.+|
T Consensus 276 ~~l--~~L~~ll----~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~ 335 (450)
T 2jdq_A 276 SAL--QSLLHLL----SS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR 335 (450)
T ss_dssp THH--HHHHHHT----TC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred ccH--HHHHHHH----cC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 111 1222322 22 236899999999988753211 00 1345566666643 34333
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=84.30 E-value=5.9 Score=46.86 Aligned_cols=207 Identities=18% Similarity=0.180 Sum_probs=122.1
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhCCCCchh---------HHHHHHHHhccCCchHHHHHHHHHHHHcccccccc----
Q 001111 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD---- 724 (1154)
Q Consensus 658 ~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~---- 724 (1154)
-..+..|..+.+...|.+|+.+|......+.. ++..|.+.|.++ -..||..|+.+|++++.....
T Consensus 120 ~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 120 PRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp HHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHH
Confidence 34455555443488899999999876433221 456788888774 579999999999998754221
Q ss_pred ---hhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCCh----HHHHHHHHHHhhccCCCC
Q 001111 725 ---WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP----REAVEFVLQLLKYNDNNG 797 (1154)
Q Consensus 725 ---~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p----~~v~~fLldll~~NDNs~ 797 (1154)
..+++.|++..+. . .+--+++....+|+.+=....... ..+...|+.+|+.
T Consensus 198 i~~~g~l~~Ll~lL~~---~--------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~----- 255 (528)
T 4b8j_A 198 VLANGALLPLLAQLNE---H--------------TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS----- 255 (528)
T ss_dssp HHHTTCHHHHHHTCCT---T--------------CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-----
T ss_pred HHHCCcHHHHHHHHhc---C--------------CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-----
Confidence 1246666654421 0 112377777888887754432222 2367788888863
Q ss_pred CCCchHHHHHHHHHHhhccccccccH--HHHH-HHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHH---------h
Q 001111 798 NPYSDVFWLAALVQSVGELEFGQQSI--LFLS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---------L 865 (1154)
Q Consensus 798 N~ysD~~y~a~li~aL~~~~~~~~~~--~~~~-~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~---------~ 865 (1154)
.|.-.+...+.+|+++..+.... ...+ .++..+-.++.-. ..-|...|+.+|..++.. -
T Consensus 256 ---~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~------~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 326 (528)
T 4b8j_A 256 ---NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP------SPSVLIPALRTVGNIVTGDDAQTQCIID 326 (528)
T ss_dssp ---CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS------CHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC------ChhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 24567788888998875432211 1111 2444555555432 345666777888776420 0
Q ss_pred cCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhcccc
Q 001111 866 SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (1154)
Q Consensus 866 ~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~ 903 (1154)
.|.+ ..+..++ ..+....||.+|..+|-.+..
T Consensus 327 ~~~l--~~L~~lL----~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 327 HQAL--PCLLSLL----TQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp TTHH--HHHHHHH----HSCCCHHHHHHHHHHHHHHHT
T ss_pred hhhH--HHHHHHH----cCCCcHHHHHHHHHHHHHHHC
Confidence 1111 1222332 223247899999999888754
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=84.08 E-value=5.4 Score=47.31 Aligned_cols=203 Identities=15% Similarity=0.191 Sum_probs=119.3
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCch---------hHHHHHHHHhccCCchHHHHHHHHHHHHccccccc-------
Q 001111 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~---------~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~------- 723 (1154)
.+.-|..+.+...|.+|+.+|......+. .++..|.+.|.+. -..||..|+.+|+.++....
T Consensus 135 Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~ 212 (530)
T 1wa5_B 135 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVL 212 (530)
T ss_dssp HHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHH
Confidence 33334333388899999999987644321 1345677788764 67899999999999886421
Q ss_pred chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccC-CCCh----HHHHHHHHHHhhccCCCCC
Q 001111 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD-NKSP----REAVEFVLQLLKYNDNNGN 798 (1154)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~-g~~p----~~v~~fLldll~~NDNs~N 798 (1154)
...+++.|++..+. + .--+++....+|+.+-... .... ..+...|+.+|+..
T Consensus 213 ~~~~l~~L~~ll~~----~--------------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~----- 269 (530)
T 1wa5_B 213 QCNAMEPILGLFNS----N--------------KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM----- 269 (530)
T ss_dssp HTTCHHHHHHGGGS----C--------------CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-----
T ss_pred HcCcHHHHHHHhcc----C--------------CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-----
Confidence 12356777766653 1 1236777778888775433 2222 24667788888632
Q ss_pred CCchHHHHHHHHHHhhcccccccc--HHHHH-HHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHH---------hc
Q 001111 799 PYSDVFWLAALVQSVGELEFGQQS--ILFLS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---------LS 866 (1154)
Q Consensus 799 ~ysD~~y~a~li~aL~~~~~~~~~--~~~~~-~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~---------~~ 866 (1154)
|.-.+...+.+|+++..+... ....+ .++..+-.++.- -..-+-..|+.+|..++.. -.
T Consensus 270 ---d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 340 (530)
T 1wa5_B 270 ---DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH------ESTLVQTPALRAVGNIVTGNDLQTQVVINA 340 (530)
T ss_dssp ---CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC------CChhhHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 355777788888876543211 01111 244455555542 2334556677777776410 01
Q ss_pred CCCchhhhhhhhccccCCCCcHHHHHHHHHHhhcccc
Q 001111 867 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (1154)
Q Consensus 867 ~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~ 903 (1154)
|.+| .+..++ ..+ -..||.+|..+|-.+..
T Consensus 341 ~~l~--~L~~lL----~~~-~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 341 GVLP--ALRLLL----SSP-KENIKKEACWTISNITA 370 (530)
T ss_dssp THHH--HHHHHT----TCS-CHHHHHHHHHHHHHHTT
T ss_pred chHH--HHHHHH----cCC-CHHHHHHHHHHHHHHHc
Confidence 2221 222332 222 37899999999988754
No 34
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=82.43 E-value=20 Score=42.44 Aligned_cols=226 Identities=13% Similarity=0.184 Sum_probs=122.0
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCchh---------HHHHHHHHhccCCchHHHHHHHHHHHHccccccc-------
Q 001111 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~------- 723 (1154)
++.-|+.+.+...|.+|..+|.....++.. ++..|.+.|.++ --.||..|+.||++++....
T Consensus 105 LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~ 182 (510)
T 3ul1_B 105 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVI 182 (510)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344455666678899999999876433322 345688888764 57999999999999986422
Q ss_pred chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhh-ccCCCCh----HHHHHHHHHHhhccCCCCC
Q 001111 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR-AADNKSP----REAVEFVLQLLKYNDNNGN 798 (1154)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr-~~~g~~p----~~v~~fLldll~~NDNs~N 798 (1154)
...|+..|+...+.. +.+.... -+++....+++.+- +.+...+ ..+...|..+|+.
T Consensus 183 ~~G~i~~Ll~lL~~~------------~~~~~~~-~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~------ 243 (510)
T 3ul1_B 183 KHGAIDPLLALLAVP------------DLSTLAC-GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH------ 243 (510)
T ss_dssp HTTCHHHHHHHTCSS------------CGGGSCH-HHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC------
T ss_pred HcCChHHHHHHHHhc------------cchhhhH-HHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc------
Confidence 223567777666421 1111111 23444556666553 2323322 3455677788763
Q ss_pred CCchHHHHHHHHHHhhccccccccH-HHH--HHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHH---------Hhc
Q 001111 799 PYSDVFWLAALVQSVGELEFGQQSI-LFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL---------KLS 866 (1154)
Q Consensus 799 ~ysD~~y~a~li~aL~~~~~~~~~~-~~~--~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~---------~~~ 866 (1154)
.|.--+...+.+|+++..+..+. ..+ ..++.-+..++. +-..-+-..|+++|..++. --.
T Consensus 244 --~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~------~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~ 315 (510)
T 3ul1_B 244 --NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG------ATELPIVTPALRAIGNIVTGTDEQTQKVIDA 315 (510)
T ss_dssp --SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc------CCChhhhhHHHHHHHHhhcCCHHHHHHHhhc
Confidence 23346677777887765432211 011 113344444443 2233455567777766531 011
Q ss_pred CCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccCCc------hHHHHHHHHHhcc
Q 001111 867 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEE 921 (1154)
Q Consensus 867 ~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~------~~~l~~~~~~~~~ 921 (1154)
|.++ .+..... .....||..|..+|--+....... ..++..++..+.+
T Consensus 316 g~l~------~L~~LL~-~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~ 369 (510)
T 3ul1_B 316 GALA------VFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 369 (510)
T ss_dssp TGGG------GCC-CTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred cchH------HHHHHhc-CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC
Confidence 2221 1122222 223689999999998875422110 0245566666644
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=81.95 E-value=17 Score=42.85 Aligned_cols=224 Identities=17% Similarity=0.149 Sum_probs=130.8
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCC----Cc------hhHHHHHHHHhccCCchHHHHHHHHHHHHccccccc---
Q 001111 657 VQMWINQLEKDGDVVAQAQAIAALEALPH----LS------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET--- 723 (1154)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~----~s------~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~--- 723 (1154)
--..+..|+ +.|...|..|+.+|.+.-+ .. ..++..|.+.|.++ .-..||.+||.+|+.++....
T Consensus 89 i~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHH
Confidence 445556665 5689999999999986421 11 12456678888764 258899999999999886321
Q ss_pred ----chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChH-----HHHHHHHHHhhccC
Q 001111 724 ----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYND 794 (1154)
Q Consensus 724 ----~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~-----~v~~fLldll~~ND 794 (1154)
...+++.|++..++. +--|+.....+|+.+-..+..+.. .+...|+++|+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~------------------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-- 226 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTG------------------SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-- 226 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS--
T ss_pred HHHHHCCCHHHHHHHHcCC------------------CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc--
Confidence 123578888887741 123777777888777432111111 256678888873
Q ss_pred CCCCCCchHHHHHHHHHHhhcccccc---ccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHH-------
Q 001111 795 NNGNPYSDVFWLAALVQSVGELEFGQ---QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK------- 864 (1154)
Q Consensus 795 Ns~N~ysD~~y~a~li~aL~~~~~~~---~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~------- 864 (1154)
.|.-.+...+.+|+++..+. ........++.-+.+++.-+ ..-|-..++.+|..|+..
T Consensus 227 ------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~L~~~~~~~~~~ 294 (530)
T 1wa5_B 227 ------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM------DTETLVDACWAISYLSDGPQEAIQA 294 (530)
T ss_dssp ------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC------CHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34567778888888765332 12223344666666666422 233444555666665420
Q ss_pred --hcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccCCc------hHHHHHHHHHhcc
Q 001111 865 --LSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEE 921 (1154)
Q Consensus 865 --~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~------~~~l~~~~~~~~~ 921 (1154)
-.|.+| .+..++. .....||..|+.+|-.+....... ..++..++..+..
T Consensus 295 ~~~~~~v~--~Lv~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 295 VIDVRIPK--RLVELLS-----HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp HHHTTCHH--HHHHGGG-----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHhcCcHH--HHHHHHC-----CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC
Confidence 012222 2333332 123789999999998875321100 0245666666654
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=81.33 E-value=8.7 Score=38.97 Aligned_cols=136 Identities=20% Similarity=0.163 Sum_probs=88.3
Q ss_pred CCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCCchh---------HHHHHHHHhccCCchHHHHHHHHHHHHccccccc--
Q 001111 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 723 (1154)
Q Consensus 655 qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~-- 723 (1154)
.+.+.....|-++.|...|.+|+.+|......+.. ++..|.+.|.++ -..||..|+.+|+.++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHH
Confidence 45677888888899999999999999875322221 356688888775 57999999999999874321
Q ss_pred -----chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCC-----hHHHHHHHHHHhhcc
Q 001111 724 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYN 793 (1154)
Q Consensus 724 -----~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~-----p~~v~~fLldll~~N 793 (1154)
...|++.|++..+.. +.-+++....+|+.+-..+... -..+...|+++|+.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~- 149 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP------------------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS- 149 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-
T ss_pred HHHHHHCCCHHHHHHHHcCC------------------cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-
Confidence 123577787766531 1347777778888774321100 01245677777762
Q ss_pred CCCCCCCchHHHHHHHHHHhhcccc
Q 001111 794 DNNGNPYSDVFWLAALVQSVGELEF 818 (1154)
Q Consensus 794 DNs~N~ysD~~y~a~li~aL~~~~~ 818 (1154)
.|.-.+...+.+|+++..
T Consensus 150 -------~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 150 -------PNEQILQEALWALSNIAS 167 (210)
T ss_dssp -------SCHHHHHHHHHHHHHHHT
T ss_pred -------CCHHHHHHHHHHHHHHHc
Confidence 134566677777777644
No 37
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=81.17 E-value=5.7 Score=51.85 Aligned_cols=108 Identities=15% Similarity=0.220 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHhhcccc-cCCCCcHhHHHHHHHHHHHHHHhcCCCc--hhhhhhhh
Q 001111 802 DVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRL-MPSYNGILTISCIRTLTQIALKLSGFIS--LDQVVKLI 878 (1154)
Q Consensus 802 D~~y~a~li~aL~~~~~~~~~~~~~~~~~~ei~r~~~~D~~-~pSy~~vvt~~~l~~l~~l~~~~~~~~~--~~~~~~~~ 878 (1154)
|..=+-..|+||||+..+. .++.|.+|+.-.+. -.+...-|-++|+.+|++++. .-| .-++ ++
T Consensus 453 ~~~~~~~~LkaLGN~g~p~--------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----~~p~~v~~i--l~ 518 (1056)
T 1lsh_A 453 KEEEIVLALKALGNAGQPN--------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----RDPRKVQEI--VL 518 (1056)
T ss_dssp CHHHHHHHHHHHHHHTCGG--------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG----TCHHHHHHH--HH
T ss_pred ChHHHHHHHHHhhccCChh--------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh----hchHHHHHH--HH
Confidence 4445778889999987642 35566666543211 233344577888998887641 122 1111 23
Q ss_pred ccccCCCCcHHHHHHHHHHhhccccccCCchHHHHHHHHHhccCccchh
Q 001111 879 KPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRG 927 (1154)
Q Consensus 879 ~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 927 (1154)
.-|.+......||++|+..|++ +......|+-+...+..||+.-.
T Consensus 519 ~i~~n~~e~~EvRiaA~~~Lm~----t~P~~~~l~~ia~~l~~E~~~QV 563 (1056)
T 1lsh_A 519 PIFLNVAIKSELRIRSCIVFFE----SKPSVALVSMVAVRLRREPNLQV 563 (1056)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHH----TCCCHHHHHHHHHHHTTCSCHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHH----HCcCHHHHHHHHHHHhhCchHHH
Confidence 4456667789999999999987 23223678888888888887443
No 38
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=80.74 E-value=1.2e+02 Score=38.94 Aligned_cols=210 Identities=13% Similarity=0.109 Sum_probs=115.9
Q ss_pred cHHHHHHHHHHHh--CCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhccCCCCCCCC
Q 001111 670 VVAQAQAIAALEA--LPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLP 747 (1154)
Q Consensus 670 V~aQ~eAi~~L~~--~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~~~~~~~ip 747 (1154)
-.-|.-|+.+|+- ..+.+..+.+.|..+|.|+.. -+|..||.+|+.+-....+-.-+..|+....+.
T Consensus 451 ~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------- 519 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------- 519 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---------
Confidence 4567778888885 334456788999999987664 578899999997622111112245565544431
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccHHHHH
Q 001111 748 RPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLS 827 (1154)
Q Consensus 748 k~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~~~~~~~~~~ 827 (1154)
.+ + -+++++..+|+.+- ..-.+..+-|+++|+. +.|++ .=|-+.++.+++-+..+. ..-++
T Consensus 520 -~~------e-~vrR~aalgLGll~----~g~~e~~~~li~~L~~---~~dp~--vRygaa~alglAyaGTGn--~~aIq 580 (963)
T 4ady_A 520 -QH------G-NITRGLAVGLALIN----YGRQELADDLITKMLA---SDESL--LRYGGAFTIALAYAGTGN--NSAVK 580 (963)
T ss_dssp -SC------H-HHHHHHHHHHHHHT----TTCGGGGHHHHHHHHH---CSCHH--HHHHHHHHHHHHTTTSCC--HHHHH
T ss_pred -Cc------H-HHHHHHHHHHHhhh----CCChHHHHHHHHHHHh---CCCHH--HHHHHHHHHHHHhcCCCC--HHHHH
Confidence 01 1 37788999999772 2233566777888873 22322 234444555555555543 22233
Q ss_pred HHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCc-hhhhhhhhccccCCCCcHHHHHHHHHHhhccccccC
Q 001111 828 SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN 906 (1154)
Q Consensus 828 ~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~-~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~ 906 (1154)
+++.- +.-|. ..-|-.++..+|..++ .|... ...++.++..| ++ ..||..|..+|=.+.. ..
T Consensus 581 ~LL~~----~~~d~-----~d~VRraAViaLGlI~---~g~~e~v~rlv~~L~~~---~d-~~VR~gAalALGli~a-Gn 643 (963)
T 4ady_A 581 RLLHV----AVSDS-----NDDVRRAAVIALGFVL---LRDYTTVPRIVQLLSKS---HN-AHVRCGTAFALGIACA-GK 643 (963)
T ss_dssp HHHHH----HHHCS-----CHHHHHHHHHHHHHHT---SSSCSSHHHHTTTGGGC---SC-HHHHHHHHHHHHHHTS-SS
T ss_pred HHHHH----hccCC-----cHHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHhc---CC-HHHHHHHHHHHHHhcc-CC
Confidence 33322 22221 1224445555555432 33321 22343433333 32 5899999988876643 34
Q ss_pred CchHHHHHHHHHhccCccchh
Q 001111 907 GIDSALSLFIKSVEEEPSLRG 927 (1154)
Q Consensus 907 ~~~~~l~~~~~~~~~~~~~~~ 927 (1154)
|...+++ .|.-+..|+....
T Consensus 644 ~~~~aid-~L~~L~~D~d~~V 663 (963)
T 4ady_A 644 GLQSAID-VLDPLTKDPVDFV 663 (963)
T ss_dssp CCHHHHH-HHHHHHTCSSHHH
T ss_pred CcHHHHH-HHHHHccCCCHHH
Confidence 4457777 5555666665443
No 39
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=76.65 E-value=20 Score=43.87 Aligned_cols=227 Identities=14% Similarity=0.134 Sum_probs=118.5
Q ss_pred HhhCCCcHHHHHHHHHHHhCCCCc--hh----HHHHHHHHhc-cCCchHHHHHHHHHHHHcccccccchhh-HHHHHHHH
Q 001111 664 LEKDGDVVAQAQAIAALEALPHLS--FN----VVNTLNNFLS-DSKAFWRVRIEAAYALANTASEETDWAG-LLHLVKFY 735 (1154)
Q Consensus 664 L~~drDV~aQ~eAi~~L~~~~~~s--~~----~~~~L~~~l~-d~~~F~~VR~~Aa~aLa~~a~~~~~~~g-~~~L~~~f 735 (1154)
+-.++|-.-|+-|++.|...-... .. ....+.++|. |+... ||..|...|.++.++.+ ... +..|.++.
T Consensus 337 ~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~--Ir~~aL~lL~~l~~~~N-v~~Iv~eL~~yl 413 (621)
T 2vgl_A 337 FLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVS--VRQRAVDLLYAMCDRSN-AQQIVAEMLSYL 413 (621)
T ss_dssp HSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHH--HHHHHHHHHHHHCCHHH-HHHHHHHHHHHH
T ss_pred HhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHh--HHHHHHHHHHHHcChhh-HHHHHHHHHHHH
Confidence 334688899999998888753221 11 2234556666 76633 99999999999998754 222 33444444
Q ss_pred HhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhc
Q 001111 736 KSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGE 815 (1154)
Q Consensus 736 ~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~ 815 (1154)
.+ ++ .-++..+..+|+.+=........-..++|+++|+.. ++.+. ..++..+..
T Consensus 414 ~~--~d----------------~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~---~~~v~-----~ev~~~l~~ 467 (621)
T 2vgl_A 414 ET--AD----------------YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA---GDYVS-----EEVWYRVIQ 467 (621)
T ss_dssp HH--CC----------------HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH---GGGSC-----SHHHHHHHH
T ss_pred Hh--cC----------------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh---cccch-----HHHHHHHHH
Confidence 43 11 123445556777664333445678899999999843 33333 233333333
Q ss_pred cccccc-cH-HHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcC---CCchhhhhhhhccccCCCCcHHH
Q 001111 816 LEFGQQ-SI-LFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG---FISLDQVVKLIKPFRDFNTIWQV 890 (1154)
Q Consensus 816 ~~~~~~-~~-~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~---~~~~~~~~~~~~~y~~~~~~~~v 890 (1154)
+....+ -. ..+..+++.|+ -|..+..+-.+|.-.+.+-+-.... ..|.+-+..+...|. .....|
T Consensus 468 ii~~~~~~~~~~~~~l~~~l~--------~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~--~~~~~v 537 (621)
T 2vgl_A 468 IVINRDDVQGYAAKTVFEALQ--------APACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH--LCSVPT 537 (621)
T ss_dssp HHGGGCSCHHHHHHHHHHHHT--------SSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT--TSCHHH
T ss_pred HHhCChhHHHHHHHHHHHHHc--------CccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc--cCCHHH
Confidence 221111 11 12233333322 3444433333333444443322211 112332322223332 235789
Q ss_pred HHHHHHHhhccccccCCchHHHHHHHHHhcc----Cccchhhh
Q 001111 891 RVEASRALLDLEFHCNGIDSALSLFIKSVEE----EPSLRGQV 929 (1154)
Q Consensus 891 R~~A~~~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~ 929 (1154)
|..++.+++.+..........+..++..... |+.+|.|.
T Consensus 538 ~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~~~~~~d~evrdRA 580 (621)
T 2vgl_A 538 RALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRA 580 (621)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHSSHHHHSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999865544444445555544332 34555554
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=76.48 E-value=60 Score=38.36 Aligned_cols=227 Identities=14% Similarity=0.183 Sum_probs=121.8
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCchh---------HHHHHHHHhccCCchHHHHHHHHHHHHccccccc------
Q 001111 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (1154)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~------ 723 (1154)
.++.-|..+.+..-|.+|..+|.....++.. ++..|.+.|.++ .-.||..|+.||++++....
T Consensus 123 ~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i 200 (529)
T 3tpo_A 123 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLV 200 (529)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3455566677788999999988875433322 345677777653 67899999999999986422
Q ss_pred -chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhh-ccCCCCh----HHHHHHHHHHhhccCCCC
Q 001111 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR-AADNKSP----REAVEFVLQLLKYNDNNG 797 (1154)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr-~~~g~~p----~~v~~fLldll~~NDNs~ 797 (1154)
...|+..|+...... . -+.... -+++.+..+++.+- +.+...+ ..+...|..+|+.+
T Consensus 201 ~~~g~i~~Ll~lL~~~--~----------~~~~~~-~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---- 263 (529)
T 3tpo_A 201 IKHGAIDPLLALLAVP--D----------LSTLAC-GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---- 263 (529)
T ss_dssp HHTTCHHHHHHTTCSS--C----------GGGSCH-HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS----
T ss_pred HHcCCcHHHHHHHhcc--c----------hhHhHH-HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC----
Confidence 223567777655421 0 011111 23444555666553 2222222 34566788888633
Q ss_pred CCCchHHHHHHHHHHhhccccccccH-HHH--HHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHH---------Hh
Q 001111 798 NPYSDVFWLAALVQSVGELEFGQQSI-LFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL---------KL 865 (1154)
Q Consensus 798 N~ysD~~y~a~li~aL~~~~~~~~~~-~~~--~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~---------~~ 865 (1154)
|.--+...+.||+++..+..+. ..+ ..++.-+-.++. +-..-+-..|+.+|..++. --
T Consensus 264 ----~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~ 333 (529)
T 3tpo_A 264 ----DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG------ATELPIVTPALRAIGNIVTGTDEQTQKVID 333 (529)
T ss_dssp ----CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc------CCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence 3446667777887764432211 011 113333444443 2233455567777766531 01
Q ss_pred cCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccCCc------hHHHHHHHHHhcc
Q 001111 866 SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEE 921 (1154)
Q Consensus 866 ~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~------~~~l~~~~~~~~~ 921 (1154)
.|.++ .+..++ . ..-..||..|..+|--+....... ..++..++..+.+
T Consensus 334 ~g~l~--~L~~LL----~-~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 334 AGALA--VFPSLL----T-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 388 (529)
T ss_dssp TTGGG--GHHHHT----T-CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred cccHH--HHHHHH----c-CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence 22222 122332 1 123679999999998775421100 0245566666644
No 41
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=76.43 E-value=31 Score=39.13 Aligned_cols=222 Identities=18% Similarity=0.154 Sum_probs=125.1
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhC----CCCc------h-hHHHHHHHHhccCCchHHHHHHHHHHHHcccccccc----
Q 001111 660 WINQLEKDGDVVAQAQAIAALEAL----PHLS------F-NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD---- 724 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~----~~~s------~-~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~---- 724 (1154)
.+..| ++.|...|..|+..|.+. .... . .++..|.+.|.++ .-..||.+|+.+|+.++.....
T Consensus 25 l~~~l-~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 102 (450)
T 2jdq_A 25 MIEMI-FSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK-ENCTLQFESAWVLTNIASGNSLQTRI 102 (450)
T ss_dssp HHHHH-HSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT-TCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45556 567999999999988763 1111 0 3566778888764 2579999999999998763211
Q ss_pred ---hhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCCh-----HHHHHHHHHHhhccCCC
Q 001111 725 ---WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP-----REAVEFVLQLLKYNDNN 796 (1154)
Q Consensus 725 ---~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p-----~~v~~fLldll~~NDNs 796 (1154)
..+++.|++..+. + +.-++.....+|+.+-..+..+- ..+...|+.+|+..
T Consensus 103 ~~~~~~i~~L~~lL~~----~--------------~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--- 161 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSS----E--------------FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ--- 161 (450)
T ss_dssp HHHTTHHHHHHHHTTC----S--------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC---
T ss_pred HHhCCCHHHHHHHHcC----C--------------CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC---
Confidence 1245666665542 1 12477777778877743221111 13566788888721
Q ss_pred CCCCchHHHHHHHHHHhhcccccc---ccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHH---------
Q 001111 797 GNPYSDVFWLAALVQSVGELEFGQ---QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK--------- 864 (1154)
Q Consensus 797 ~N~ysD~~y~a~li~aL~~~~~~~---~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~--------- 864 (1154)
.|.-.+...+.+|+++..+. ........++.-+.++++- -..-+...+..+|..|+..
T Consensus 162 ----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 231 (450)
T 2jdq_A 162 ----NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV------SDTDVLADACWALSYLSDGPNDKIQAVI 231 (450)
T ss_dssp ----CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC------CCHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc------CCHHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 23557778888888764321 1111223455555555542 1233444555666665310
Q ss_pred hcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccCCc------hHHHHHHHHHhcc
Q 001111 865 LSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEE 921 (1154)
Q Consensus 865 ~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~------~~~l~~~~~~~~~ 921 (1154)
..|.+ +.+..++. .....||..|..+|-.+....... ..++..++..+..
T Consensus 232 ~~~~i--~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 232 DAGVC--RRLVELLM-----HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp HTTTH--HHHHHHTT-----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred HcCcH--HHHHHHHC-----CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC
Confidence 01222 22333331 233689999999998875322110 0256667766654
No 42
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=75.20 E-value=14 Score=48.85 Aligned_cols=237 Identities=11% Similarity=0.071 Sum_probs=126.1
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhC-CCC--------chhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHH
Q 001111 660 WINQLEKDGDVVAQAQAIAALEAL-PHL--------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLH 730 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~-~~~--------s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~ 730 (1154)
...++ .+.|-..|..|...|.+. ... ...+...|.+.|.|+ -+.||..|+.+|+.++..-.. ..+..
T Consensus 11 lL~~l-~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~--~~~vR~~A~~~L~~l~~~~~~-~~~~~ 86 (1230)
T 1u6g_C 11 LLEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK--NGEVQNLAVKCLGPLVSKVKE-YQVET 86 (1230)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTSCH-HHHHH
T ss_pred HHHhc-CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhCCH-HHHHH
Confidence 34443 357888888888777642 111 113566788888764 689999999999988753211 12233
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCC----------ChHHHHHHHHHHhhccCCCCCCC
Q 001111 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----------SPREAVEFVLQLLKYNDNNGNPY 800 (1154)
Q Consensus 731 L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~----------~p~~v~~fLldll~~NDNs~N~y 800 (1154)
++.......-++.. -++.+...+++.+=..-+. ..+++..+|++.+.- +.
T Consensus 87 i~~~Ll~~l~d~~~--------------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~---~~--- 146 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKE--------------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK---QE--- 146 (1230)
T ss_dssp HHHHHHHHTTCSSS--------------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC---CS---
T ss_pred HHHHHHHHhcCCcH--------------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC---CC---
Confidence 33322221112211 1566666677665433332 256788888888852 22
Q ss_pred chHHHHHHHHHHhhcccc--ccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 001111 801 SDVFWLAALVQSVGELEF--GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLI 878 (1154)
Q Consensus 801 sD~~y~a~li~aL~~~~~--~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~ 878 (1154)
|.-.+...+++|+++.- +..-..+...++..+-..+.-+ +..|-.++++++..++....... ++.+...+
T Consensus 147 -~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~------~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l 218 (1230)
T 1u6g_C 147 -DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP------RLAVRKRTIIALGHLVMSCGNIV-FVDLIEHL 218 (1230)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS------SHHHHHHHHHHHHHHTTTC-----CTTHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHH
Confidence 23467777888876421 1111124456666666555421 23566777888877653211111 11111111
Q ss_pred ccccCCCCcHHHHHHHHHHhhcccccc-----CCchHHHHHHHHHhc-cCccchhh
Q 001111 879 KPFRDFNTIWQVRVEASRALLDLEFHC-----NGIDSALSLFIKSVE-EEPSLRGQ 928 (1154)
Q Consensus 879 ~~y~~~~~~~~vR~~A~~~l~~~~~~~-----~~~~~~l~~~~~~~~-~~~~~~~~ 928 (1154)
..+.....-..+|.+|+++|..+.... .-+...+..++..+. .++..|..
T Consensus 219 ~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~ 274 (1230)
T 1u6g_C 219 LSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274 (1230)
T ss_dssp HHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHH
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 111111111357888888888764321 223467888888874 34655543
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=74.90 E-value=75 Score=39.83 Aligned_cols=291 Identities=14% Similarity=0.083 Sum_probs=134.4
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhC----CCC---------chhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccch--
Q 001111 661 INQLEKDGDVVAQAQAIAALEAL----PHL---------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW-- 725 (1154)
Q Consensus 661 ~~QL~~drDV~aQ~eAi~~L~~~----~~~---------s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~-- 725 (1154)
+.++-.+.|...|..|+..|... +.. ...+...|.+.+.|+ -..||.+|+.+|+.+.......
T Consensus 133 L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vR~~A~~aL~~~~~~~~~~~~ 210 (852)
T 4fdd_A 133 LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS--SPKIRSHAVACVNQFIISRTQALM 210 (852)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS--SHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccHHHH
Confidence 33445667878888888766642 211 112334455556654 5789999999999876432211
Q ss_pred hhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCC----CChHHHHHHHHHHhhccCCCCCCCc
Q 001111 726 AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN----KSPREAVEFVLQLLKYNDNNGNPYS 801 (1154)
Q Consensus 726 ~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g----~~p~~v~~fLldll~~NDNs~N~ys 801 (1154)
.-+..+++.....--+ .+--++++...++..+=...+ ..-..+..+++.+++. .
T Consensus 211 ~~~~~~l~~l~~~~~d--------------~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--------~ 268 (852)
T 4fdd_A 211 LHIDSFIENLFALAGD--------------EEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD--------Q 268 (852)
T ss_dssp TSHHHHHHHHHHHHTC--------------CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--------S
T ss_pred HHHHHHHHHHHHHcCC--------------CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--------C
Confidence 1122233322221111 112367777777765543221 1123567777777762 2
Q ss_pred hHHHHHHHHHHhhcccccccc----HHHHHHHHHHHHHHhh----------cc--c------ccCCCCcHhHHHHHHHHH
Q 001111 802 DVFWLAALVQSVGELEFGQQS----ILFLSSLLKRIDRLLQ----------FD--R------LMPSYNGILTISCIRTLT 859 (1154)
Q Consensus 802 D~~y~a~li~aL~~~~~~~~~----~~~~~~~~~ei~r~~~----------~D--~------~~pSy~~vvt~~~l~~l~ 859 (1154)
|...+...++.+..+.-.... ..++..++..+-..+. -| + -.+++. +-.++.++|.
T Consensus 269 ~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~--vr~~a~~~L~ 346 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWN--LRKCSAAALD 346 (852)
T ss_dssp SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCC--HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccch--HHHHHHHHHH
Confidence 344555556665543210000 1123344443333331 11 0 002222 2234445555
Q ss_pred HHHHHhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccC-----CchHHHHHHHHHhccCccchhhhhHHHH
Q 001111 860 QIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN-----GIDSALSLFIKSVEEEPSLRGQVKLGIH 934 (1154)
Q Consensus 860 ~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 934 (1154)
.|+... |.--+..+..++..+... .-+.+|.+|+.+|-.+..... -...++..++..+ .||.++.+......
T Consensus 347 ~la~~~-~~~~~~~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l-~d~~~~Vr~~a~~~ 423 (852)
T 4fdd_A 347 VLANVY-RDELLPHILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL-SDKKALVRSITCWT 423 (852)
T ss_dssp HHHHHH-GGGGHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT-TCSSHHHHHHHHHH
T ss_pred HHHHhc-cHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHH
Confidence 554322 221123333444333332 348999999999988743211 1124555566555 45555544322223
Q ss_pred HhhhhhhccCCCCCCCCChHHHHH-HHHHHhccccccchhhHhhHHHHHHHhh
Q 001111 935 AMRICQIKGGSDSNHEVDTVTLVA-LLNLLESRIAFNNVFLRHHLFGILQILA 986 (1154)
Q Consensus 935 ~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~lr~~~~~~~~~l~ 986 (1154)
+.+++....+.. ..--...++. ++..+.+ .+...|..+...+..+.
T Consensus 424 l~~l~~~~~~~~--~~~~~~~ll~~L~~~L~d----~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 424 LSRYAHWVVSQP--PDTYLKPLMTELLKRILD----SNKRVQEAACSAFATLE 470 (852)
T ss_dssp HHHTHHHHHHSC--TTTTHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccch--HHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHH
Confidence 333333211111 1111223333 3444433 35677776666655554
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=73.87 E-value=1.9e+02 Score=36.18 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhCCCCc--------hhHHHHHHHHhccCCchHHHHHHHHHHHHcccc
Q 001111 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1154)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s--------~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~ 720 (1154)
-..++.++-++.+-..|..|+.+|....... ..+...|.+.+.|+ -..||..|+.+|++++.
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~--~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK--KALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHH
Confidence 3455566667889999999999999874322 23556678888775 68999999999998875
No 45
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=70.29 E-value=70 Score=39.82 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=43.9
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCch---------hHHHHHHHHhccCCchHHHHHHHHHHHHccccc
Q 001111 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~---------~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~ 721 (1154)
.+.+.-.|++-..|..|+.+|........ .+...|.+.+.|+ .+.||..|+.+|++++..
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~--~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP--SVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHh
Confidence 44555578899999999999987643211 2345677778775 589999999999987753
No 46
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=66.36 E-value=1.2e+02 Score=30.90 Aligned_cols=166 Identities=24% Similarity=0.233 Sum_probs=99.9
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCchh---------HHHHHHHHhccCCchHHHHHHHHHHHHccccccc-------
Q 001111 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~------- 723 (1154)
.+-++-.+.|...|..|+.+|......+.. ++..|.+.+.++ -..||..|+.+|+.++....
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~ 125 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIV 125 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555678889999999999876443222 456788888775 48999999999999884221
Q ss_pred chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChH--------HHHHHHHHHhhccCC
Q 001111 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR--------EAVEFVLQLLKYNDN 795 (1154)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~--------~v~~fLldll~~NDN 795 (1154)
.-.+++.|++..+. + +--+++....+|+.+=.. .+. .+...|+++|+.
T Consensus 126 ~~~~i~~L~~~l~~----~--------------~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~--- 181 (252)
T 4hxt_A 126 DAGGVEVLVKLLTS----T--------------DSEVQKEAARALANIASG---PDEAIKAIVDAGGVEVLVKLLTS--- 181 (252)
T ss_dssp HTTHHHHHHHHTTC----S--------------CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHTTC---
T ss_pred HCCCHHHHHHHHcC----C--------------CHHHHHHHHHHHHHHHcC---CHHHHHHHHHCcCHHHHHHHHCC---
Confidence 11346777766652 0 123778788888877432 222 267788888872
Q ss_pred CCCCCchHHHHHHHHHHhhccccccccH-H-HH-HHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHH
Q 001111 796 NGNPYSDVFWLAALVQSVGELEFGQQSI-L-FL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (1154)
Q Consensus 796 s~N~ysD~~y~a~li~aL~~~~~~~~~~-~-~~-~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~ 862 (1154)
+|.--+...+.+|+++..+.... . +. ..++..+.++++- -..-+...|+.+|.+|.
T Consensus 182 -----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 182 -----TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS------TDSEVQKEAQRALENIK 240 (252)
T ss_dssp -----SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC------CcHHHHHHHHHHHHHHH
Confidence 12456777778888765432210 0 11 1244444444431 12344555666666653
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=66.19 E-value=53 Score=33.93 Aligned_cols=131 Identities=21% Similarity=0.181 Sum_probs=82.9
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCchh---------HHHHHHHHhccCCchHHHHHHHHHHHHcccccccch-----
Q 001111 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW----- 725 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~----- 725 (1154)
..-++-++.+...|..|+.+|......+.. ++..|.+.|.++ -..||..|+.+|+.++......
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~ 135 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVI 135 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHH
Confidence 344555677888999999999876443221 466788888875 4799999999999987643222
Q ss_pred --hhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCCh-----HHHHHHHHHHhhccCCCCC
Q 001111 726 --AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP-----REAVEFVLQLLKYNDNNGN 798 (1154)
Q Consensus 726 --~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p-----~~v~~fLldll~~NDNs~N 798 (1154)
.|++.|++..+. + +.-+++....+|+.+=..+...- ..+...|+++|+..
T Consensus 136 ~~~~i~~L~~lL~~----~--------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----- 192 (252)
T 4db8_A 136 DAGALPALVQLLSS----P--------------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----- 192 (252)
T ss_dssp HTTHHHHHHHGGGC----S--------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS-----
T ss_pred HCCCHHHHHHHHhC----C--------------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC-----
Confidence 356777766542 1 12477777788877743211000 12355677777621
Q ss_pred CCchHHHHHHHHHHhhcccc
Q 001111 799 PYSDVFWLAALVQSVGELEF 818 (1154)
Q Consensus 799 ~ysD~~y~a~li~aL~~~~~ 818 (1154)
|.-.+...+.+|+++..
T Consensus 193 ---~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 193 ---NEQILQEALWALSNIAS 209 (252)
T ss_dssp ---SHHHHHHHHHHHHHHTT
T ss_pred ---CHHHHHHHHHHHHHHhc
Confidence 44566677777777643
No 48
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=65.98 E-value=86 Score=39.17 Aligned_cols=156 Identities=10% Similarity=0.083 Sum_probs=92.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHccccccc------chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHH
Q 001111 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEA 763 (1154)
Q Consensus 690 ~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~------~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqka 763 (1154)
++..|...+..+ .-.+|..|+.+|..++.... ...|++.|+....+.- +. ++ -++..
T Consensus 458 vIp~Lv~Ll~S~--s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~-------~~----~~----~~k~~ 520 (778)
T 3opb_A 458 LISFLKREMHNL--SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQ-------DI----GE----PIRIL 520 (778)
T ss_dssp HHHHHHHHGGGS--CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC--------------CC----HHHHH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-------Cc----ch----HHHHH
Confidence 567777777553 67999999999999876432 2345788888776421 00 01 24566
Q ss_pred HHHHHhhhhc-cC------CCChHHHHHHHHHHhhccCCCCC-CCchH-----HHHHHHHHHhhcccccccc--HHHHHH
Q 001111 764 IPHAVAMVRA-AD------NKSPREAVEFVLQLLKYNDNNGN-PYSDV-----FWLAALVQSVGELEFGQQS--ILFLSS 828 (1154)
Q Consensus 764 ip~ala~vr~-~~------g~~p~~v~~fLldll~~NDNs~N-~ysD~-----~y~a~li~aL~~~~~~~~~--~~~~~~ 828 (1154)
-..||+++=- .+ |..+.++.++|++||.....+.+ +-++. -=....+.||+|+....++ ...-.+
T Consensus 521 AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 521 GCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 6677777642 22 54566999999999985333322 11111 1144566788876543321 122234
Q ss_pred HHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHH
Q 001111 829 LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (1154)
Q Consensus 829 ~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~ 862 (1154)
++++-.-.-.++.++-|-+.-|-.++.++++.|.
T Consensus 601 Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~ 634 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634 (778)
T ss_dssp HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4443112233334445556688889999999986
No 49
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=65.43 E-value=2e+02 Score=35.44 Aligned_cols=135 Identities=13% Similarity=0.081 Sum_probs=77.2
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCc--h-------hHHHHHHHHhccCCchHHHHHHHHHHHHccccccc-c---h
Q 001111 659 MWINQLEKDGDVVAQAQAIAALEALPHLS--F-------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-D---W 725 (1154)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s--~-------~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~-~---~ 725 (1154)
..+.++-.+.+...|..|+.+|...-... . .+...|.+.+.|+ -..||..|+.+|++++..-. . .
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ--SLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 34455556788888889999988764332 1 1345566777775 68899999999998774311 0 1
Q ss_pred hhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCC--------CChHHHHHHHHHHhhccCCCC
Q 001111 726 AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN--------KSPREAVEFVLQLLKYNDNNG 797 (1154)
Q Consensus 726 ~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g--------~~p~~v~~fLldll~~NDNs~ 797 (1154)
.-+..++...-+..-+ . | -|+.+...|++.+-..-+ ..-+.+...|+.+++..|+.
T Consensus 450 ~~~~~~l~~l~~~l~~---~-~-----------~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~- 513 (861)
T 2bpt_A 450 QHLPGVVQACLIGLQD---H-P-----------KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNE- 513 (861)
T ss_dssp TTHHHHHHHHHHHHTS---C-H-----------HHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCG-
T ss_pred HHHHHHHHHHHHHhcc---C-h-----------HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcc-
Confidence 1133333322221101 0 1 366666666654432211 12356777888888743331
Q ss_pred CCCchHHHHHHHHHHhhcc
Q 001111 798 NPYSDVFWLAALVQSVGEL 816 (1154)
Q Consensus 798 N~ysD~~y~a~li~aL~~~ 816 (1154)
.-.+.+++++|+.+
T Consensus 514 -----~~vr~~a~~al~~l 527 (861)
T 2bpt_A 514 -----FNARASAFSALTTM 527 (861)
T ss_dssp -----GGHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHH
Confidence 23566777777764
No 50
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=63.64 E-value=1.9e+02 Score=32.39 Aligned_cols=237 Identities=12% Similarity=-0.005 Sum_probs=116.5
Q ss_pred hhCC--CcHHHHHHHHHHHhCCC---------CchhHHHHHHHHhccCCchHHHHHHHHHHHHccccc----ccchhhHH
Q 001111 665 EKDG--DVVAQAQAIAALEALPH---------LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASE----ETDWAGLL 729 (1154)
Q Consensus 665 ~~dr--DV~aQ~eAi~~L~~~~~---------~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~----~~~~~g~~ 729 (1154)
-.+. |...+..|+..|..... ....+...|...+.|+..-..||.+|+.+|+.+..- ...+.-..
T Consensus 137 l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 216 (462)
T 1ibr_B 137 VTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH 216 (462)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3455 77888888877774311 112355677888887643579999999999975421 11121112
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCC----CChH-HHHHHHHHHhhccCCCCCCCchHH
Q 001111 730 HLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN----KSPR-EAVEFVLQLLKYNDNNGNPYSDVF 804 (1154)
Q Consensus 730 ~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g----~~p~-~v~~fLldll~~NDNs~N~ysD~~ 804 (1154)
.++....+.. . .. +--+++++..++..+-...+ ..-. .+..+++..++. .|.-
T Consensus 217 ~l~~~l~~~~--~------~~------~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~ 274 (462)
T 1ibr_B 217 FIMQVVCEAT--Q------CP------DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS--------DIDE 274 (462)
T ss_dssp HHHHHHHHHT--T------CS------SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC--------SSHH
T ss_pred HHHHHHHHhc--C------CC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CchH
Confidence 2333333211 0 00 12366666677665543322 1122 667777777652 1233
Q ss_pred HHHHHHHHhhccccc-------------------ccc----HHHHHHHHHHHHHHhhc-c--cccCCCCcHhHHHHHHHH
Q 001111 805 WLAALVQSVGELEFG-------------------QQS----ILFLSSLLKRIDRLLQF-D--RLMPSYNGILTISCIRTL 858 (1154)
Q Consensus 805 y~a~li~aL~~~~~~-------------------~~~----~~~~~~~~~ei~r~~~~-D--~~~pSy~~vvt~~~l~~l 858 (1154)
.+...++.++.+.-. ... ..++..++.-+-+.+.- | ..-.++ .+-.+|..+|
T Consensus 275 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~--~~r~~a~~~L 352 (462)
T 1ibr_B 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW--NPCKAAGVCL 352 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccc--hHHHHHHHHH
Confidence 455555544432110 000 01223444444333321 1 111122 3344566666
Q ss_pred HHHHHHhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccC------CchHHHHHHHHHhccCccchhh
Q 001111 859 TQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN------GIDSALSLFIKSVEEEPSLRGQ 928 (1154)
Q Consensus 859 ~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~ 928 (1154)
..++..+ |.--++.+..++..+.. +..+.+|.+|+.+|-.+..... .+..++..++..+. ||.++.+
T Consensus 353 ~~l~~~~-~~~~~~~~~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~-d~~~~Vr 425 (462)
T 1ibr_B 353 MLLATCC-EDDIVPHVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-DPSVVVR 425 (462)
T ss_dssp HHHHHHT-TTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG-CSCHHHH
T ss_pred HHHHHhc-cHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-CCCHHHH
Confidence 6665332 32112333333333333 3458999999999987753221 12346666666663 4444443
No 51
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=63.54 E-value=1.1e+02 Score=38.14 Aligned_cols=216 Identities=14% Similarity=0.073 Sum_probs=113.3
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCch---------hHHHHHHHHhccCCchHHHHHHHHHHHHccccccc------
Q 001111 659 MWINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (1154)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~---------~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~------ 723 (1154)
..+-+|-+++|...|..|+.+|......+. ..+..|.+.|.+...--.||..|+.+|+.++....
T Consensus 402 ~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~ 481 (780)
T 2z6g_A 402 GTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQ 481 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 344555678899999999888886543321 24566777776522123899999999999875211
Q ss_pred ----chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCC----hHHHHHHHHHHhhccCC
Q 001111 724 ----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS----PREAVEFVLQLLKYNDN 795 (1154)
Q Consensus 724 ----~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~----p~~v~~fLldll~~NDN 795 (1154)
...|++.|++..+.- + ..-|+++...+|+.+-...... -..+...|+++|+..+.
T Consensus 482 ~~v~~~~~l~~L~~lL~~~-----------~------~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 544 (780)
T 2z6g_A 482 NAVRLHYGLPVVVKLLHPP-----------S------HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 544 (780)
T ss_dssp HHHHHTTCHHHHHHTTSTT-----------C------CHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHhcCC-----------C------hHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcch
Confidence 124577777655421 0 1247788888888774210000 01255677788864320
Q ss_pred ---------CCC-----CCchHHHHHHHHHHhhccccccccHHHH--HHHHHHHHHHhhcccccCCCCcHhHHHHHHHHH
Q 001111 796 ---------NGN-----PYSDVFWLAALVQSVGELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLT 859 (1154)
Q Consensus 796 ---------s~N-----~ysD~~y~a~li~aL~~~~~~~~~~~~~--~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~ 859 (1154)
-.| .-++.-.+...+.+|+++..+..+...+ ..++.-+..+++- -..-|-..|..+|.
T Consensus 545 ~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~------~~~~v~~~a~~aL~ 618 (780)
T 2z6g_A 545 DTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYS------PIENIQRVAAGVLC 618 (780)
T ss_dssp HHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGC------SCHHHHHHHHHHHH
T ss_pred hHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcC------CCHHHHHHHHHHHH
Confidence 011 1122234556777777764432211111 1134444444442 12233444556666
Q ss_pred HHHH--------HhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccc
Q 001111 860 QIAL--------KLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFH 904 (1154)
Q Consensus 860 ~l~~--------~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~ 904 (1154)
+|+. .-.|.+ +.+..++ . ..-..||..|..+|-.+...
T Consensus 619 ~L~~~~~~~~~i~~~g~i--~~L~~Ll----~-~~~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 619 ELAQDKEAAEAIEAEGAT--APLTELL----H-SRNEGVATYAAAVLFRMSED 664 (780)
T ss_dssp HHHTSHHHHHHHHHTTCH--HHHHHGG----G-CSCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHCCCH--HHHHHHH----c-CCCHHHHHHHHHHHHHHHcC
Confidence 5531 111111 2222322 1 22357888888888776543
No 52
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=62.51 E-value=50 Score=41.36 Aligned_cols=262 Identities=15% Similarity=0.142 Sum_probs=126.4
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHcccccccchhh----HHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 001111 691 VNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAG----LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH 766 (1154)
Q Consensus 691 ~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g----~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ 766 (1154)
+..|.+.+.+. --.++..|+.+|.+++.......+ ++.|++..+. + +--+++....
T Consensus 362 l~~Ll~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~----~--------------d~~vr~~A~~ 421 (780)
T 2z6g_A 362 MQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----D--------------DINVVTCAAG 421 (780)
T ss_dssp HHHHGGGTTCS--CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC----S--------------CHHHHHHHHH
T ss_pred HHHHHHHHcCC--chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcC----C--------------CHHHHHHHHH
Confidence 45677777664 357899999999987754333333 4444444321 1 1237788888
Q ss_pred HHhhhhccCCCC-----hHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccHHHHH------HHHHHHHH
Q 001111 767 AVAMVRAADNKS-----PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLS------SLLKRIDR 835 (1154)
Q Consensus 767 ala~vr~~~g~~-----p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~~~~~~~~~~------~~~~ei~r 835 (1154)
||+.+-..+... -..+...|+++|...++. .-.+...+.+|+++..........+ .++.-|.+
T Consensus 422 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~------~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~ 495 (780)
T 2z6g_A 422 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR------EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK 495 (780)
T ss_dssp HHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCH------HHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHH
Confidence 888874321100 013677888888743221 1356677788888754322211111 13334444
Q ss_pred HhhcccccCCCCcHhHHHHHHHHHHHHH--------HhcCCCchhhhhhhhcc-----------------ccCCCCcHHH
Q 001111 836 LLQFDRLMPSYNGILTISCIRTLTQIAL--------KLSGFISLDQVVKLIKP-----------------FRDFNTIWQV 890 (1154)
Q Consensus 836 ~~~~D~~~pSy~~vvt~~~l~~l~~l~~--------~~~~~~~~~~~~~~~~~-----------------y~~~~~~~~v 890 (1154)
++.- +...-|-.+|..+|.+|+. .-.|.+| .+..++.. +...+...++
T Consensus 496 lL~~-----~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v 568 (780)
T 2z6g_A 496 LLHP-----PSHWPLIKATVGLIRNLALCPANHAPLREQGAIP--RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 568 (780)
T ss_dssp TTST-----TCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHTTC------CCSTTCCHHHH
T ss_pred HhcC-----CChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHH--HHHHHHHhcchhHHHHHhhccccchhhcccChHHH
Confidence 4432 2221343444456666541 0112222 12222211 4445556788
Q ss_pred HHHHHHHhhccccccCCc-----hHHHHHHHHHhccC-ccchhhhhHHHHHhhhhhhccCCCCCCCCChHHHHHHHHHHh
Q 001111 891 RVEASRALLDLEFHCNGI-----DSALSLFIKSVEEE-PSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLE 964 (1154)
Q Consensus 891 R~~A~~~l~~~~~~~~~~-----~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 964 (1154)
|.+|..||-.+....... ..++..++..+... +.++... ..++..+.. ..+....|.....++.|..+.
T Consensus 569 ~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a---~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll 643 (780)
T 2z6g_A 569 VEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVA---AGVLCELAQ--DKEAAEAIEAEGATAPLTELL 643 (780)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHH---HHHHHHHHT--SHHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHH---HHHHHHHhc--CHHHHHHHHHCCCHHHHHHHH
Confidence 888888887764211000 02255566666442 3333221 111111110 000000111111122222222
Q ss_pred ccccccchhhHhhHHHHHHHhhcCCcccc
Q 001111 965 SRIAFNNVFLRHHLFGILQILAGRAPTLY 993 (1154)
Q Consensus 965 ~~~~~~~~~lr~~~~~~~~~l~~~~~~l~ 993 (1154)
. +.|..+|..+..+|..|+.+.+..|
T Consensus 644 ~---~~~~~Vr~~A~~aL~~l~~~~~~~~ 669 (780)
T 2z6g_A 644 H---SRNEGVATYAAAVLFRMSEDKPQDY 669 (780)
T ss_dssp G---CSCHHHHHHHHHHHHHHHTTSCTTH
T ss_pred c---CCCHHHHHHHHHHHHHHHcCChHhh
Confidence 2 3577888888888888877666555
No 53
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=61.34 E-value=3.5e+02 Score=34.62 Aligned_cols=261 Identities=13% Similarity=0.089 Sum_probs=142.2
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHh--CCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHh
Q 001111 660 WINQLEKDGDVVAQAQAIAALEA--LPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~--~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~ 737 (1154)
.+.++-.|.+-+.+.-|..+|+- ..+.+..+++.|..++.++. -=.||..||.+||.+..... .....|++.+..
T Consensus 476 ~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~--e~~~~li~~L~~ 552 (963)
T 4ady_A 476 ALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ--ELADDLITKMLA 552 (963)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG--GGGHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh--HHHHHHHHHHHh
Confidence 34444455554555566666663 34555566677766655432 34799999999996543211 235666766664
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccc
Q 001111 738 RRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELE 817 (1154)
Q Consensus 738 ~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~ 817 (1154)
-. + -.++.+-..|++.--...| -..+++=||..+. +| .+.+.+.+.+-|||.+.
T Consensus 553 ~~-d----------------p~vRygaa~alglAyaGTG--n~~aIq~LL~~~~-~d------~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 553 SD-E----------------SLLRYGGAFTIALAYAGTG--NNSAVKRLLHVAV-SD------SNDDVRRAAVIALGFVL 606 (963)
T ss_dssp CS-C----------------HHHHHHHHHHHHHHTTTSC--CHHHHHHHHHHHH-HC------SCHHHHHHHHHHHHHHT
T ss_pred CC-C----------------HHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHhc-cC------CcHHHHHHHHHHHHhhc
Confidence 21 1 1355555555554433333 3556665555554 12 23457889999999877
Q ss_pred cccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHHHHHHHH
Q 001111 818 FGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRA 897 (1154)
Q Consensus 818 ~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~ 897 (1154)
++.... ..+++ +.+.-+++-.|-.++--+|..+ .+|.-. ..+...+.++.. +.-..||..|+.+
T Consensus 607 ~g~~e~--v~rlv---------~~L~~~~d~~VR~gAalALGli---~aGn~~-~~aid~L~~L~~-D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 607 LRDYTT--VPRIV---------QLLSKSHNAHVRCGTAFALGIA---CAGKGL-QSAIDVLDPLTK-DPVDFVRQAAMIA 670 (963)
T ss_dssp SSSCSS--HHHHT---------TTGGGCSCHHHHHHHHHHHHHH---TSSSCC-HHHHHHHHHHHT-CSSHHHHHHHHHH
T ss_pred cCCHHH--HHHHH---------HHHHhcCCHHHHHHHHHHHHHh---ccCCCc-HHHHHHHHHHcc-CCCHHHHHHHHHH
Confidence 764321 22222 1222356655655655554443 344433 233345555443 5568899999999
Q ss_pred hhccccccC-----CchHHHHHHHHHhcc---CccchhhhhHHHHHhh----hhhhccCCCCCCCCChHHHHHHHHHHhc
Q 001111 898 LLDLEFHCN-----GIDSALSLFIKSVEE---EPSLRGQVKLGIHAMR----ICQIKGGSDSNHEVDTVTLVALLNLLES 965 (1154)
Q Consensus 898 l~~~~~~~~-----~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 965 (1154)
|=.++.... -....|+-++.++.. |+..+-...+..-.+. ++.+.--...+.-++...++.++.....
T Consensus 671 LG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~~~~~~a~~Gl~~f~q~ 750 (963)
T 4ady_A 671 LSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQF 750 (963)
T ss_dssp HHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTCCBCHHHHHHHHHHTTT
T ss_pred HHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCCCHHHHHHHHHHHHH
Confidence 987765422 233567777777753 4443333333333332 2233221011346788899988776533
No 54
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=58.63 E-value=39 Score=38.26 Aligned_cols=18 Identities=0% Similarity=0.159 Sum_probs=10.5
Q ss_pred CCCCcHhHHHHHHHHHHH
Q 001111 844 PSYNGILTISCIRTLTQI 861 (1154)
Q Consensus 844 pSy~~vvt~~~l~~l~~l 861 (1154)
-+-++.|-..|.++++.+
T Consensus 260 ~~~~~aVvyEa~k~I~~l 277 (355)
T 3tjz_B 260 RNKHEMVVYEAASAIVNL 277 (355)
T ss_dssp CCSSHHHHHHHHHHHTC-
T ss_pred cCCChHHHHHHHHHHHhc
Confidence 345556666676766654
No 55
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=57.48 E-value=68 Score=37.73 Aligned_cols=210 Identities=20% Similarity=0.246 Sum_probs=117.6
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhC----CCCch-h-----HHHHHHHHhccCCchHHHHHHHHHHHHccccccc---
Q 001111 657 VQMWINQLEKDGDVVAQAQAIAALEAL----PHLSF-N-----VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET--- 723 (1154)
Q Consensus 657 ~~m~~~QL~~drDV~aQ~eAi~~L~~~----~~~s~-~-----~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~--- 723 (1154)
-...+..| +..|...|++|..++++. +++.. . ++..|.+.|... ---.|+.+||.||+.+++...
T Consensus 59 i~~~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~-~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHH
Confidence 45667787 568999999999888864 22211 1 345688888643 246899999999999875321
Q ss_pred ----chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChH-----HHHHHHHHHhhccC
Q 001111 724 ----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYND 794 (1154)
Q Consensus 724 ----~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~-----~v~~fLldll~~ND 794 (1154)
+..+++.|++..++ ++ --|++....||+.+=..+-.+.. .+...|+.+|+..|
T Consensus 137 ~~vv~~GaIp~Lv~lL~s----~~--------------~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~ 198 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLAS----PH--------------AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 198 (510)
T ss_dssp HHHHHTTHHHHHHHHTTC----SC--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSC
T ss_pred HHHHHCCCHHHHHHHHcC----CC--------------HHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhcc
Confidence 12357888877653 11 13777777888877311111111 13556888887544
Q ss_pred CCCCCCchHHHHHHHHHHhhcccccc---ccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHH--------
Q 001111 795 NNGNPYSDVFWLAALVQSVGELEFGQ---QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL-------- 863 (1154)
Q Consensus 795 Ns~N~ysD~~y~a~li~aL~~~~~~~---~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~-------- 863 (1154)
.+. ...-.+..+..+|+++..+. ........++.-+.++++-+ ..-+-..+..+|..|+.
T Consensus 199 ~~~---~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~------~~~v~~~A~~aL~~L~~~~~~~~~~ 269 (510)
T 3ul1_B 199 LST---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN------DPEVLADSCWAISYLTDGPNERIEM 269 (510)
T ss_dssp GGG---SCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS------CHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred chh---hhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC------CHHHHHHHHHHHHHHhhchhhhHHH
Confidence 322 12335566677777654322 22223455666666665432 22233334455555431
Q ss_pred -HhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccc
Q 001111 864 -KLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLE 902 (1154)
Q Consensus 864 -~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~ 902 (1154)
...|.+| .+..++. ..-..|+..|..+|--+.
T Consensus 270 i~~~g~i~--~Lv~lL~-----~~~~~v~~~al~aL~nl~ 302 (510)
T 3ul1_B 270 VVKKGVVP--QLVKLLG-----ATELPIVTPALRAIGNIV 302 (510)
T ss_dssp HHTTTCHH--HHHHHHT-----CSCHHHHHHHHHHHHHHT
T ss_pred HHhcccch--hhhhhhc-----CCChhhhhHHHHHHHHhh
Confidence 1123222 1223321 123578888888887653
No 56
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=56.81 E-value=1.6e+02 Score=35.52 Aligned_cols=208 Identities=14% Similarity=0.142 Sum_probs=110.2
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhCCCCc--------hhHHHHHHHHhccCCchHHHHHHHHHHHHccccccc------
Q 001111 658 QMWINQLEKDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (1154)
Q Consensus 658 ~m~~~QL~~drDV~aQ~eAi~~L~~~~~~s--------~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~------ 723 (1154)
-..+..|..+.|...|..|+.+|....... ..++..|.+.|.++. -.||..|+.+|.+++....
T Consensus 59 ~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~nL~~~~~~~~~~v 136 (644)
T 2z6h_A 59 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAV 136 (644)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhCcchhHHHH
Confidence 345666776678999999998888643211 124567888887753 7899999999999875421
Q ss_pred -chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCC-----ChHHHHHHHHHHhhccCCCC
Q 001111 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK-----SPREAVEFVLQLLKYNDNNG 797 (1154)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~-----~p~~v~~fLldll~~NDNs~ 797 (1154)
.-.+++.|++..++. | - -++.+...+|+.+=..+.. .-..+...|+++|+-.+
T Consensus 137 ~~~g~i~~Lv~lL~~~-----------~----~---~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~--- 195 (644)
T 2z6h_A 137 RLAGGLQKMVALLNKT-----------N----V---KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--- 195 (644)
T ss_dssp HHTTHHHHHHHGGGCC-----------C----H---HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC---
T ss_pred HHCCChHHHHHHHCcC-----------C----H---HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC---
Confidence 123577777766531 1 1 2455444445443211100 01135678888997321
Q ss_pred CCCchHHHHHHHHHHhhccccccccHHH-HH-HHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCch----
Q 001111 798 NPYSDVFWLAALVQSVGELEFGQQSILF-LS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL---- 871 (1154)
Q Consensus 798 N~ysD~~y~a~li~aL~~~~~~~~~~~~-~~-~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~---- 871 (1154)
..+ -+.+.+.+|.++..+...... .+ .++..+-+++.- -..-+-..|+.+|..|+.........
T Consensus 196 --~~~--~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i 265 (644)
T 2z6h_A 196 --YEK--LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD------PSQRLVQNCLWTLRNLSDAATKQEGMEGLL 265 (644)
T ss_dssp --CHH--HHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTC------SCHHHHHHHHHHHHHHGGGCTTCCSCHHHH
T ss_pred --hHH--HHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhc------CCHHHHHHHHHHHHHHhhcchhhhhhhhHH
Confidence 122 233445555554443332221 11 244444444432 13344456667777764211000001
Q ss_pred hhhhhhhccccCCCCcHHHHHHHHHHhhcccc
Q 001111 872 DQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (1154)
Q Consensus 872 ~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~ 903 (1154)
..+..++. ..-..||..|..+|..+..
T Consensus 266 ~~Lv~lL~-----~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 266 GTLVQLLG-----SDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHTT-----CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-----CCCHHHHHHHHHHHHHHHc
Confidence 11223321 1236889999999887743
No 57
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=55.61 E-value=1.9e+02 Score=33.20 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=110.4
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCch--------hHHHHHHHHhccCCchHHHHHHHHHHHHccccccc-------
Q 001111 659 MWINQLEKDGDVVAQAQAIAALEALPHLSF--------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (1154)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~--------~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~------- 723 (1154)
..+..|+.+.|...|..|+.+|.+...... ..+..|.+.|.++. -.||..|+.+|.+++....
T Consensus 63 ~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~ 140 (529)
T 1jdh_A 63 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVR 140 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 344556666788899999998887532210 14557888887754 7899999999999875421
Q ss_pred chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCC-----ChHHHHHHHHHHhhccCCCCC
Q 001111 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK-----SPREAVEFVLQLLKYNDNNGN 798 (1154)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~-----~p~~v~~fLldll~~NDNs~N 798 (1154)
...+++.|++..++ + | --++.....+++.+--.+.. .-..+...|+++|+..+
T Consensus 141 ~~g~i~~L~~ll~~----~-------~-------~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~---- 198 (529)
T 1jdh_A 141 LAGGLQKMVALLNK----T-------N-------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT---- 198 (529)
T ss_dssp HHTHHHHHHHGGGC----C-------C-------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC----
T ss_pred HcCCHHHHHHHHhc----C-------C-------HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC----
Confidence 23457777776653 1 0 12445444555544211100 11135677888887442
Q ss_pred CCchHHHHHHHHHHhhccccccccHHHH--HHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCch----h
Q 001111 799 PYSDVFWLAALVQSVGELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL----D 872 (1154)
Q Consensus 799 ~ysD~~y~a~li~aL~~~~~~~~~~~~~--~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~----~ 872 (1154)
+.--+.+...+|.++..+......+ ..++..+-+++.- ...-+-..|+.+|..|.......... .
T Consensus 199 ---~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~ 269 (529)
T 1jdh_A 199 ---YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD------PSQRLVQNCLWTLRNLSDAATKQEGMEGLLG 269 (529)
T ss_dssp ---CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS------SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHH
T ss_pred ---hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC------CChHHHHHHHHHHHHHhcCChhhHHHHhHHH
Confidence 2223334445555544333222111 1244444444432 13334455667777764211000001 1
Q ss_pred hhhhhhccccCCCCcHHHHHHHHHHhhcccc
Q 001111 873 QVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (1154)
Q Consensus 873 ~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~ 903 (1154)
.+..++ . .....+|..|..+|-.+..
T Consensus 270 ~L~~ll----~-~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 270 TLVQLL----G-SDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHT----T-CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHH----c-CCCHHHHHHHHHHHHHHhc
Confidence 122322 1 2346899999999988754
No 58
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=54.24 E-value=1.2e+02 Score=36.52 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=61.9
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHcccccccchh----hHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHH
Q 001111 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWA----GLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIP 765 (1154)
Q Consensus 690 ~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~----g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip 765 (1154)
++..|.+.+.+. .-.+|..|+.+|..++....... .++.|++..+. + +--+++...
T Consensus 225 ~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~----~--------------d~~v~~~a~ 284 (644)
T 2z6h_A 225 GMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----D--------------DINVVTCAA 284 (644)
T ss_dssp HHHHHHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTC----S--------------CHHHHHHHH
T ss_pred CHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcC----C--------------CHHHHHHHH
Confidence 345677777664 68899999999998875433222 24555554431 1 013677777
Q ss_pred HHHhhhhccCCCC-----hHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhcccc
Q 001111 766 HAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (1154)
Q Consensus 766 ~ala~vr~~~g~~-----p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~ 818 (1154)
.+|+.+-..+... -..+...|+++|+..++ ..-.+...+.+|+++..
T Consensus 285 ~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~------~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 285 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD------REDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCC------cHHHHHHHHHHHHHHhc
Confidence 8887774321100 01256788888874321 13466778888888754
No 59
>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease; HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB: 2y50_A* 2y6i_A*
Probab=48.65 E-value=5.9 Score=49.42 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCC------CCccEEEeCCCcccc--------ccccCceeeeeccc--cccCcccc
Q 001111 276 SKIHNTVEFFHNAFSHYETYLDAKFPF------GSYKQVFLAPEMAVS--------SSTFGAAMGIFSSQ--ILYDEKVI 339 (1154)
Q Consensus 276 ~~~~~t~~~~~~al~ffee~fG~~YPf------~ky~~VfVp~~~~~~--------~~~~gagLii~s~~--LL~~~~~~ 339 (1154)
++++.++..+.+.-..|-..++...|. ..+++++..+...+. ....| |+.+-+.. +-|.....
T Consensus 338 ~~~~~~~~a~k~~e~~Fh~vl~t~~p~~~~~~~~~L~Vvvf~s~~dY~~~~~lfg~~TdNG-G~YleG~~~f~aYe~~~~ 416 (785)
T 2y3u_A 338 EKIKRLYWASREVKSQFHRVVGNDKALEVGNADDVLTMKIFNSPEEYKFNTNINGVSTDNG-GLYIEPRGTFYTYERTPQ 416 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSCSSSSCGGGSEEEEEESSHHHHTHHHHHHCCCCSSS-CEEEGGGTEEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCeEEEEEECCHHHHhhcccccCCcCCCc-eEEEeCCceEEEEeccCc
Confidence 455555555555555666777766664 257777654211110 11111 32221111 11211100
Q ss_pred hhhhhhHHHHHHHHHHhhcCCccccCCCC---------cchhhhhHHHhHHH
Q 001111 340 DQAIDTSIKLSFALARQWFGVYITPELPN---------DEWLLDGLAGFLTD 382 (1154)
Q Consensus 340 d~~~~~~~~IaHELAHQWFGnlVt~~~W~---------D~WLnEGfA~Yl~~ 382 (1154)
...+....++.||++|.-=|-+..+..|. -.|+.||+|.||+.
T Consensus 417 ~si~nLee~f~HEytHyLdgRy~~~G~f~~~~~y~~~~~vW~~EG~AEY~s~ 468 (785)
T 2y3u_A 417 QSIFSLEELFRHEYTHYLQARYLVDGLWGQGPFYEKNRLTWFDEGTAEFFAG 468 (785)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHTSCSSTTSSGGGTTTCSHHHHHHHHHHHTT
T ss_pred cceEeecccccchhhhccccccccccccccCcccccCCCceehhhHHHHHhc
Confidence 01111233679999999866555555554 56999999999965
No 60
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=47.57 E-value=1e+02 Score=35.60 Aligned_cols=200 Identities=13% Similarity=0.036 Sum_probs=101.7
Q ss_pred hCCCcHHHHHHHHHHHhCC----CC-----chhHHHHHHHHhccCCchHHHHHHHHHHHHcccccc-------cchhhHH
Q 001111 666 KDGDVVAQAQAIAALEALP----HL-----SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-------TDWAGLL 729 (1154)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~----~~-----s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~-------~~~~g~~ 729 (1154)
.+.|-..|.+|+.+|.... .. ...++..|.+.|.++ -.++|..|+.+|..++... ....|++
T Consensus 111 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~ 188 (529)
T 1jdh_A 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence 4566778888888887641 11 112456688888764 5899999999999876521 1234678
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCCh----HHHHHHHHHHhhccCCCCCCCchHHH
Q 001111 730 HLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP----REAVEFVLQLLKYNDNNGNPYSDVFW 805 (1154)
Q Consensus 730 ~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p----~~v~~fLldll~~NDNs~N~ysD~~y 805 (1154)
.|+++.+.. .+ --++.+...++..+-....... ..+...|+++|+.. |...
T Consensus 189 ~L~~ll~~~--~~---------------~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~--------~~~~ 243 (529)
T 1jdh_A 189 ALVNIMRTY--TY---------------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--------SQRL 243 (529)
T ss_dssp HHHHHHHHC--CC---------------HHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS--------CHHH
T ss_pred HHHHHHHhC--Ch---------------HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC--------ChHH
Confidence 888877752 10 0133333334333321111000 12455666777521 3345
Q ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHH---------hcCCCchhhhhh
Q 001111 806 LAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---------LSGFISLDQVVK 876 (1154)
Q Consensus 806 ~a~li~aL~~~~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~---------~~~~~~~~~~~~ 876 (1154)
+...+.+|+++.-..........++..+-++++ +-..-+-..|..+|.+|+.. -.|. .+.+..
T Consensus 244 ~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~--v~~L~~ 315 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG--IEALVR 315 (529)
T ss_dssp HHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT------CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTH--HHHHHH
T ss_pred HHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC--hHHHHH
Confidence 556666666653221111112345555555543 22233444455555555310 0111 122333
Q ss_pred hhccccCCCCcHHHHHHHHHHhhcccc
Q 001111 877 LIKPFRDFNTIWQVRVEASRALLDLEF 903 (1154)
Q Consensus 877 ~~~~y~~~~~~~~vR~~A~~~l~~~~~ 903 (1154)
++.. .+....+|..|..+|--+..
T Consensus 316 ll~~---~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 316 TVLR---AGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HHHH---HTTCHHHHHHHHHHHHHHTS
T ss_pred HHHc---cCCHHHHHHHHHHHHHHHHc
Confidence 3322 12235788888888877643
No 61
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Probab=46.12 E-value=78 Score=34.94 Aligned_cols=103 Identities=8% Similarity=0.090 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCCccEE-EeCCC--ccccccccCceeeeecc--ccccCcccchhhhhhHHHHHH
Q 001111 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV-FLAPE--MAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKLSF 351 (1154)
Q Consensus 277 ~~~~t~~~~~~al~ffee~fG~~YPf~ky~~V-fVp~~--~~~~~~~~gagLii~s~--~LL~~~~~~d~~~~~~~~IaH 351 (1154)
.+..+.-.+..+.+||.++|| .-++.. .++ .|-.. ..++ .|-+.-.+|.+ ...++ .....+++|
T Consensus 72 ~~~DAhy~a~~~~d~y~~~~g-r~~id~-~l~~~Vhyg~~y~NA--fWdG~~M~fGDG~~~~~p-------~~~lDVv~H 140 (301)
T 1u4g_A 72 PLNDAHFFGGVVFKLYRDWFG-TSPLTH-KLYMKVHYGRSVENA--YWDGTAMLFGDGATMFYP-------LVSLDVAAH 140 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-SCSSSS-CEEEEESCTTTCCCE--EECSSCEEECCCCSSBSC-------SCCHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHHcC-CCCCCC-ceEEEEecCCCccCc--EecCcEEEeeCCCccccc-------ccccceeee
Confidence 355666778899999999998 557763 333 23211 1111 11111122321 11111 123458999
Q ss_pred HHHHhhcCCccccCCCCcch-hhhhHHHhHHHHHHHHHhC
Q 001111 352 ALARQWFGVYITPELPNDEW-LLDGLAGFLTDSFIKKFLG 390 (1154)
Q Consensus 352 ELAHQWFGnlVt~~~W~D~W-LnEGfA~Yl~~l~~~~~~G 390 (1154)
|++|--.-..-.+....+.. |||||+..+...+-....|
T Consensus 141 E~tHGVt~~~agL~y~~eSGaLnEs~SDifG~~ve~~~~~ 180 (301)
T 1u4g_A 141 EVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEAAEFYMRG 180 (301)
T ss_dssp HHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccceeccccCccccCCccchhHHHHHHHHHHHHHHhcC
Confidence 99998776654444444433 8999999998765433333
No 62
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=46.06 E-value=37 Score=36.16 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=40.0
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhCCCCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccc
Q 001111 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1154)
Q Consensus 660 ~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~ 720 (1154)
....|-++.--.+|+.|+..|.+. .....+...+...+.+. --||||-.+|.++.....
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~-~~~~~~L~~ir~~va~D-~~WrVre~lA~a~~~~~~ 133 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYL-SKDKEILIFMRDEVSKD-NNWRVQEVLAKAFDEFCK 133 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHT-TTSHHHHHHHHHTGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcchHHHHHHHHHHHhc-cCcHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHHH
Confidence 344455555559999999999887 33344555555534432 357999999999998653
No 63
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=44.81 E-value=5.2e+02 Score=31.70 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=39.4
Q ss_pred HHHhhCC--CcHHHHHHHHHHHhCC---------CCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccc
Q 001111 662 NQLEKDG--DVVAQAQAIAALEALP---------HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1154)
Q Consensus 662 ~QL~~dr--DV~aQ~eAi~~L~~~~---------~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~ 720 (1154)
.++-.+. |...+..|++.|.... .....+...|.+.+.++..-..||..|+.+|+.+..
T Consensus 134 ~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 134 VANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3344556 7777777887776431 112234556777787764468999999999998653
No 64
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=42.62 E-value=31 Score=31.91 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHhhcCCc
Q 001111 345 TSIKLSFALARQWFGVY 361 (1154)
Q Consensus 345 ~~~~IaHELAHQWFGnl 361 (1154)
..-++|||++|-=-++.
T Consensus 83 l~aVlaHElgH~~~~h~ 99 (107)
T 3cqb_A 83 AEAVLAHEVSHIANGDM 99 (107)
T ss_dssp HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHCCCH
Confidence 44589999999755443
No 65
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2
Probab=40.31 E-value=92 Score=34.36 Aligned_cols=98 Identities=5% Similarity=0.035 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCC--ccEE-EeC-C------CccccccccCceeeeecc--ccccCcccchhhhhh
Q 001111 278 IHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLA-P------EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDT 345 (1154)
Q Consensus 278 ~~~t~~~~~~al~ffee~fG~~YPf~k--y~~V-fVp-~------~~~~~~~~~gagLii~s~--~LL~~~~~~d~~~~~ 345 (1154)
+..+...+..+.+||.+.|| .=++.. ..++ .|- + ...++ + |-....+|.+ ...+.+ .-..
T Consensus 67 avdA~~~~~~t~d~y~~~~g-r~sid~~G~~l~~~Vhyg~~~~~~~y~NA-f-Wdg~~m~fGdGdg~~f~~-----~~~~ 138 (301)
T 1bqb_A 67 GVDANYYAKQTYDYYKNTFG-RESYDNHGSPIVSLTHVNHYGGQDNRNNA-A-WIGDKMIYGDGDGRTFTN-----LSGA 138 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CCSTTSSCCCEEEEECCCEETTEECTTCE-E-ECSSSEEECCCCSSSBSC-----GGGC
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeeEEEEEeCCCCCCCCccCc-E-EcCCEEEEEcCCCcccCC-----cccc
Confidence 34667778899999999999 556642 3332 232 1 01111 1 1111222321 111111 1123
Q ss_pred HHHHHHHHHHhhcCCccccCCCCcc-hhhhhHHHhHHHH
Q 001111 346 SIKLSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDS 383 (1154)
Q Consensus 346 ~~~IaHELAHQWFGnlVt~~~W~D~-WLnEGfA~Yl~~l 383 (1154)
..+++||+.|--.-..-.+..-.+. =|||||+.++...
T Consensus 139 lDVv~HE~tHGVt~~~agl~y~~eSGaLnEs~SDifg~~ 177 (301)
T 1bqb_A 139 NDVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYF 177 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred cceeeeecccceecccCCCcccCCcCchhHHHHHHHhHh
Confidence 4589999999876554444333333 3899999999864
No 66
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans}
Probab=39.41 E-value=1e+02 Score=34.59 Aligned_cols=107 Identities=7% Similarity=0.035 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCCC--ccEE-EeCC--CccccccccCceeeeecc--ccccCcccchhhhhhHHH
Q 001111 276 SKIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLAP--EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIK 348 (1154)
Q Consensus 276 ~~~~~t~~~~~~al~ffee~fG~~YPf~k--y~~V-fVp~--~~~~~~~~~gagLii~s~--~LL~~~~~~d~~~~~~~~ 348 (1154)
..+..+...+....+||.+.|| .=++.. ..++ .|-. ...++ + |-+.-.+|.+ ...|.+- .....+
T Consensus 88 ~av~~ay~~~~~t~d~y~~~~g-rnsid~~G~~l~~~VHyg~~y~NA-f-WdG~~M~fGDG~g~~f~~~-----~~~lDV 159 (341)
T 2vqx_A 88 VAVDEAYDYLGVTYDFFWQAFK-RNSLDNQGLPLTGSVHYGKEYQNA-F-WNGQQMVFGDGDGEIFNRF-----TIAIDV 159 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCSTTSSCCCEEEEESCSSSCCCE-E-ECSSCEEECCCCSSSBCCT-----TSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeeEEEEecCCCccCc-e-ecCcEeEeeCCCCcccCCc-----ccchhh
Confidence 3455566677889999999999 446542 3333 3321 11111 1 1111222321 1112110 112358
Q ss_pred HHHHHHHhhcCCccccCCCCcc-hhhhhHHHhHHHHHHHHHhC
Q 001111 349 LSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFIKKFLG 390 (1154)
Q Consensus 349 IaHELAHQWFGnlVt~~~W~D~-WLnEGfA~Yl~~l~~~~~~G 390 (1154)
++||++|--.-..-....-.+. =|||||+.++...+-....+
T Consensus 160 v~HEltHGVt~~~agL~Y~~eSGaLNEs~SDifG~~ve~~~~~ 202 (341)
T 2vqx_A 160 VGHALAHGVTESEAGLIYFQQAGALNESLSDVFGSLVKQFHLK 202 (341)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcccceecccCCccccCCCcchhhHHHHHHHHHHHHHhcC
Confidence 9999999876554443333333 39999999998766444333
No 67
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=39.11 E-value=1.2e+02 Score=39.87 Aligned_cols=205 Identities=15% Similarity=0.138 Sum_probs=105.7
Q ss_pred hCCCcHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccc-----------hhh-H
Q 001111 666 KDGDVVAQAQAIAALEALPH-LS----FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD-----------WAG-L 728 (1154)
Q Consensus 666 ~drDV~aQ~eAi~~L~~~~~-~s----~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~-----------~~g-~ 728 (1154)
.|++...|..|+..|...-. .+ ..+...|.+.+.|+.. .||..|+.+|+.++..-.. |.. +
T Consensus 58 ~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~ll 135 (1230)
T 1u6g_C 58 EDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPASSGSALAANVCKKIT 135 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHH
Confidence 48999999999988875411 11 1345667777877654 7899999999988753211 111 2
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCC----ChHHHHHHHHHHhhccCCCCCCCchHH
Q 001111 729 LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----SPREAVEFVLQLLKYNDNNGNPYSDVF 804 (1154)
Q Consensus 729 ~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~----~p~~v~~fLldll~~NDNs~N~ysD~~ 804 (1154)
+.|++.+.. + + +.-++.+...+++.+=...|. .-.++...|+..|.. .+..
T Consensus 136 p~L~~~l~~------~----~-------~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~--------~~~~ 190 (1230)
T 1u6g_C 136 GRLTSAIAK------Q----E-------DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS--------PRLA 190 (1230)
T ss_dssp HHHHHHHSC------C----S-------CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGC--------SSHH
T ss_pred HHHHHHHcC------C----C-------chHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcC--------CcHH
Confidence 333333321 0 0 123566666666655332222 235667777777751 1246
Q ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHH-HHhcCCCchhhhhhhhccccC
Q 001111 805 WLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA-LKLSGFISLDQVVKLIKPFRD 883 (1154)
Q Consensus 805 y~a~li~aL~~~~~~~~~~~~~~~~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~-~~~~~~~~~~~~~~~~~~y~~ 883 (1154)
.+.+.+.||+.+...... .+...++..+-..+.-+.. ++.+. -.+.|+-.+.+.. ..+..+ ++.+...+.....
T Consensus 191 vR~~a~~al~~l~~~~~~-~~~~~~l~~l~~~L~~~~~-~~~r~-~a~~~l~~l~~~~~~~~~~~--l~~l~~~ll~~l~ 265 (1230)
T 1u6g_C 191 VRKRTIIALGHLVMSCGN-IVFVDLIEHLLSELSKNDS-MSTTR-TYIQCIAAISRQAGHRIGEY--LEKIIPLVVKFCN 265 (1230)
T ss_dssp HHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCS-SCSCT-THHHHHHHHHHHSSGGGTTS--CTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhccCCc-hhHHH-HHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhc
Confidence 788888999876432211 2333455555555544433 22221 1234444444321 011111 1223333322222
Q ss_pred CCCcHHHHHHHHHHhhcccc
Q 001111 884 FNTIWQVRVEASRALLDLEF 903 (1154)
Q Consensus 884 ~~~~~~vR~~A~~~l~~~~~ 903 (1154)
+.-..||..|+++|-.+..
T Consensus 266 -d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 266 -VDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp -SCCTTTHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHH
Confidence 2235689888888776543
No 68
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=38.89 E-value=43 Score=33.59 Aligned_cols=94 Identities=23% Similarity=0.197 Sum_probs=61.4
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCCCCchh---------HHHHHHHHhccCCchHHHHHHHHHHHHccccccc------
Q 001111 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (1154)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~------ 723 (1154)
..+-++-++.|...|..|+.+|......+.. ++..|.+.|.+.. ..||..|+.+|+.++....
T Consensus 57 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCc--HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445566677899999999999976432222 3456788887764 7999999999999885321
Q ss_pred -chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhh
Q 001111 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR 772 (1154)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr 772 (1154)
+..+++.|++..+. + +.-+++....||+.+=
T Consensus 135 ~~~~~i~~L~~ll~~----~--------------~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 135 IDAGALPALVQLLSS----P--------------NEQILQEALWALSNIA 166 (210)
T ss_dssp HHTTHHHHHHHHTTC----S--------------CHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcC----C--------------CHHHHHHHHHHHHHHH
Confidence 12245666655542 0 1236676667776663
No 69
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=37.59 E-value=13 Score=45.40 Aligned_cols=190 Identities=17% Similarity=0.250 Sum_probs=103.7
Q ss_pred HhhCCCcHHHHHHHHHHHhC----CC-------CchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHH
Q 001111 664 LEKDGDVVAQAQAIAALEAL----PH-------LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLV 732 (1154)
Q Consensus 664 L~~drDV~aQ~eAi~~L~~~----~~-------~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~ 732 (1154)
|-.+.|...++-|++.|... |. ..+..+..|...|.|+| =-||.||...|........+ ++.++
T Consensus 130 lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRneallLL~~Lt~~n~~---iQklV 204 (651)
T 3grl_A 130 LLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR--EVIRNDGVLLLQALTRSNGA---IQKIV 204 (651)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS--HHHHHHHHHHHHHHHTTCHH---HHHHH
T ss_pred HhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch--HHHHHHHHHHHHHHhcCCHH---HHHHH
Confidence 34678888888887766632 10 01124567888888875 67999999999988765432 22222
Q ss_pred HHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCC----CChHHHHHHHHHHhhccCCCCCCCchHHHHHH
Q 001111 733 KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN----KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAA 808 (1154)
Q Consensus 733 ~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g----~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~ 808 (1154)
- | .-|++.-++.|+.++| ..-.++...|.+||++|--+.|-|-..-|+..
T Consensus 205 A-F-------------------------EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~ 258 (651)
T 3grl_A 205 A-F-------------------------ENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQR 258 (651)
T ss_dssp H-H-------------------------TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGG
T ss_pred H-H-------------------------hccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence 1 0 0234444555555443 56778889999999986544455544444444
Q ss_pred HHHHhhcccccccc----HHHHHH--HHHHHHHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccc
Q 001111 809 LVQSVGELEFGQQS----ILFLSS--LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFR 882 (1154)
Q Consensus 809 li~aL~~~~~~~~~----~~~~~~--~~~ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~ 882 (1154)
|+.=|. .+.+. ..-+.. ..-+|-|.+-. |+=.---|..|.+++.+ +|.+ ..++++..
T Consensus 259 L~~LL~---~~~~~~~W~~Qk~~N~~~~L~iIrlLv~----~~~~~~~t~~nQ~~~~~-----~g~l--~~Ll~ll~--- 321 (651)
T 3grl_A 259 MKPWFE---VGDENSGWSAQKVTNLHLMLQLVRVLVS----PNNPPGATSSCQKAMFQ-----CGLL--QQLCTILM--- 321 (651)
T ss_dssp GGGGGC---CCSCSSCCCHHHHHHHHHHHHHHHHHTC----TTSCHHHHHHHHHHHHH-----TTHH--HHHHHHHT---
T ss_pred HHHHhC---CCccccccHHHHHHHHHHHHHHHHHHhC----CCCCCCCCHHHHHHHHH-----CCCH--HHHHHHHc---
Confidence 432221 11110 111122 22334444322 22111135566666655 2322 23444432
Q ss_pred CCCCcHHHHHHHHHHhhcc
Q 001111 883 DFNTIWQVRVEASRALLDL 901 (1154)
Q Consensus 883 ~~~~~~~vR~~A~~~l~~~ 901 (1154)
..+.+..||.+|+.++=++
T Consensus 322 ~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 322 ATGVPADILTETINTVSEV 340 (651)
T ss_dssp CSSCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 2455789999999988885
No 70
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding, metalloprotease, protease, secreted, zinc, zymogen; HET: LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A* 1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A* 1y3g_E* 2whz_A* 2wi0_A* 1kei_A* 3do0_A* 3do1_A* 3do2_A* 3fb0_A 3fbo_A 3fgd_A* 3flf_A* 3fv4_A* ...
Probab=33.06 E-value=1.5e+02 Score=32.81 Aligned_cols=102 Identities=3% Similarity=0.005 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCC--CccEE-EeC--CCccccccccCceeeeecc--ccccCcccchhhhhhHHH
Q 001111 276 SKIHNTVEFFHNAFSHYETYLDAKFPFG--SYKQV-FLA--PEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIK 348 (1154)
Q Consensus 276 ~~~~~t~~~~~~al~ffee~fG~~YPf~--ky~~V-fVp--~~~~~~~~~~gagLii~s~--~LL~~~~~~d~~~~~~~~ 348 (1154)
..+..+...+....+||.+.|| .=++. -..++ .|- ....++ .|-....+|.+ ...+.+- .....+
T Consensus 68 ~aavdA~~~~~~t~d~y~~~~g-r~sid~~G~~l~~~VHyg~~y~NA--fW~g~~m~fGDGdg~~f~~~-----~~slDV 139 (316)
T 3dnz_A 68 APAVDAHYYAGVTYDYYKNVHN-RLSYDGNNAAIRSSVHYSQGYNNA--FWNGSQMVYGDGDGQTFIPL-----SGGIDV 139 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEESCTTTCCCE--EECSSCEEECCCCSSSBSCG-----GGCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCceEEEEEecCCCccCc--eEcCCEEEEeCCCCcccccc-----cccccc
Confidence 3456677788999999999999 55764 23333 232 111111 11112233322 1222221 113458
Q ss_pred HHHHHHHhhcCCccccCCCCcc-hhhhhHHHhHHHHHH
Q 001111 349 LSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFI 385 (1154)
Q Consensus 349 IaHELAHQWFGnlVt~~~W~D~-WLnEGfA~Yl~~l~~ 385 (1154)
++||+.|--.-..-....-.+. =|||+|+..+...+-
T Consensus 140 v~HE~tHgvt~~~agL~y~~esGaLNEs~SDifG~~ve 177 (316)
T 3dnz_A 140 VAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVE 177 (316)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeccccccccCCCcccCCccchhHHHHHHHHHHHH
Confidence 9999999865544322222222 389999999986554
No 71
>4ger_A Gentlyase metalloprotease; metalloproteinase, tissue disaggregation, thermoly protease, hydrolase; HET: LYS; 1.59A {Paenibacillus polymyxa}
Probab=32.26 E-value=1.5e+02 Score=32.59 Aligned_cols=101 Identities=4% Similarity=0.019 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCC--ccEEE-e--CCCccccccccCceeeeecc--ccccCcccchhhhhhHHHH
Q 001111 277 KIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQVF-L--APEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKL 349 (1154)
Q Consensus 277 ~~~~t~~~~~~al~ffee~fG~~YPf~k--y~~Vf-V--p~~~~~~~~~~gagLii~s~--~LL~~~~~~d~~~~~~~~I 349 (1154)
.+..+...+....+||.+.|| .=++.. ..++. | .....++ .|-....+|.+ ...+.+- .....++
T Consensus 62 aavdA~~~~~~t~d~y~~~~g-rnsid~~G~~l~~~VHyg~~y~NA--fW~g~~m~fGDGdg~~f~~~-----~~slDVv 133 (304)
T 4ger_A 62 AGVDAHTYAAKTYDYYKAKFG-RNSIDGRGLQLRSTVHYGSRYNNA--FWNGSQMTYGDGDGSTFIAF-----SGDPDVV 133 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEEEESSSCCCE--EECSSCEEEECCCSSSBCCG-----GGSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeEEEEEeCCCCccCc--eecCCEEEEeCCCCcccccc-----ccccchh
Confidence 445677788899999999999 556642 33331 2 2211122 11112233422 1222211 1134589
Q ss_pred HHHHHHhhcCCccccCCCCcc-hhhhhHHHhHHHHHH
Q 001111 350 SFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFI 385 (1154)
Q Consensus 350 aHELAHQWFGnlVt~~~W~D~-WLnEGfA~Yl~~l~~ 385 (1154)
+|||.|--.-..-....-.+. =|||+|+..+...+-
T Consensus 134 aHEltHGVt~~ta~L~Y~~qsGaLNEs~SDifG~~ve 170 (304)
T 4ger_A 134 GHELTHGVTEYTSNLEYYGESGALNEAFSDVIGNDIQ 170 (304)
T ss_dssp HHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccCCccccCCccchhHHHHHHHHHHhc
Confidence 999999865443222211111 389999999977654
No 72
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=32.16 E-value=82 Score=37.15 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=35.6
Q ss_pred HHHhhCCCcHHHHHHHHHHHhCCCCchh---------HHHHHHHHhccCCchHHHHHHHHHHHHcccc
Q 001111 662 NQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (1154)
Q Consensus 662 ~QL~~drDV~aQ~eAi~~L~~~~~~s~~---------~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~ 720 (1154)
.+|-.+.+...|.+|+.+|.....++.. +...|.+.+.+. -..||.+||.||+.++.
T Consensus 341 ~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 341 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHc
Confidence 3455567777778887777754222221 233456666654 46788888888887664
No 73
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=30.83 E-value=1.6e+02 Score=36.96 Aligned_cols=138 Identities=12% Similarity=0.080 Sum_probs=82.6
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHccccccc------chhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHH
Q 001111 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEA 763 (1154)
Q Consensus 690 ~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~------~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqka 763 (1154)
++..|...+... -=.||.+||.+|+.++.... ...|++.|+...++- -+ -+|+.
T Consensus 496 aVp~LV~LL~s~--s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~-------~~-----------~~k~~ 555 (810)
T 3now_A 496 ITTALCALAKTE--SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG-------TE-----------KGKRH 555 (810)
T ss_dssp HHHHHHHHHTCC--CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS-------CH-----------HHHHH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC-------CH-----------HHHHH
Confidence 345677777653 46999999999999986432 223578888887641 11 26788
Q ss_pred HHHHHhhh-hccC------CCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccHHHHHH-----HHH
Q 001111 764 IPHAVAMV-RAAD------NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSS-----LLK 831 (1154)
Q Consensus 764 ip~ala~v-r~~~------g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~~~~~~~~~~~-----~~~ 831 (1154)
...||+++ +..+ +....++...|++||.. | ++..-....+.||+++....+ ...+. .+.
T Consensus 556 Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~-~------~~~l~~~eAl~AL~NLa~~~d--~~~~~Ii~aG~l~ 626 (810)
T 3now_A 556 ATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ-D------CTALENFESLMALTNLASMNE--SVRQRIIKEQGVS 626 (810)
T ss_dssp HHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST-T------SCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHH
T ss_pred HHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC-C------CcHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCCHH
Confidence 88888865 3222 11124578899999962 2 123333455778888755432 12222 333
Q ss_pred HHHHHhhcccccCCCCcHhHHHHHHHHHHHH
Q 001111 832 RIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (1154)
Q Consensus 832 ei~r~~~~D~~~pSy~~vvt~~~l~~l~~l~ 862 (1154)
.|..++. |-+--|-.++.++|++|+
T Consensus 627 ~Lv~LL~------s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 627 KIEYYLM------EDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp HHHHHHH------SCCTTHHHHHHHHHHHHT
T ss_pred HHHHHHc------CCCHHHHHHHHHHHHHHh
Confidence 3444443 334456677778888764
No 74
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=29.70 E-value=2.1e+02 Score=35.19 Aligned_cols=211 Identities=10% Similarity=0.068 Sum_probs=103.7
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHcccccc-cchh-hHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 001111 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-TDWA-GLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHA 767 (1154)
Q Consensus 690 ~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~-~~~~-g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~a 767 (1154)
....|...+.+...- .||.+|..+++.++... ..+. -+..++....+..-.+ ++-++.+...+
T Consensus 598 l~~~l~~~l~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~--------------~~~vr~~a~~~ 662 (861)
T 2bpt_A 598 LMGLFFRLLEKKDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQV--------------DSPVSITAVGF 662 (861)
T ss_dssp HHHHHHHHHHSTTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT--------------TSHHHHHHHHH
T ss_pred HHHHHHHHHccCCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc--------------cHHHHHHHHHH
Confidence 444566666664321 78999999888776431 1111 1222222222211010 11255555555
Q ss_pred HhhhhccCCCC----hHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhcccc--ccccHHHHHHHHHHHHHHhhccc
Q 001111 768 VAMVRAADNKS----PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF--GQQSILFLSSLLKRIDRLLQFDR 841 (1154)
Q Consensus 768 la~vr~~~g~~----p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~--~~~~~~~~~~~~~ei~r~~~~D~ 841 (1154)
++.+=..-|.. -.++...|++.|+.. | .|.-.+.+.+.+||.+.. +..-..++..++..+.+.+....
T Consensus 663 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~----~--~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~ 736 (861)
T 2bpt_A 663 IADISNSLEEDFRRYSDAMMNVLAQMISNP----N--ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP 736 (861)
T ss_dssp HHHHHHHTGGGGHHHHHHHHHHHHHHHHCT----T--CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhchhccchHHHHHHHHHHHhCCc----c--ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 55333222322 124445556666522 1 122367777777776532 22223467777777777665421
Q ss_pred c-----cCCCCcHhHHHHHHHHHHHHHHhcCC----Cc-hhhhhhhhccccCCCC---cHHHHHHHHHHhhccccccCCc
Q 001111 842 L-----MPSYNGILTISCIRTLTQIALKLSGF----IS-LDQVVKLIKPFRDFNT---IWQVRVEASRALLDLEFHCNGI 908 (1154)
Q Consensus 842 ~-----~pSy~~vvt~~~l~~l~~l~~~~~~~----~~-~~~~~~~~~~y~~~~~---~~~vR~~A~~~l~~~~~~~~~~ 908 (1154)
- ..-|...+-.++++++..+...+.+. -| ...++.++........ -..||.+|+.+|-++....+|.
T Consensus 737 ~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 737 ENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 0 01133445567888877776443321 11 1223333322221110 3689999999999986544232
Q ss_pred h-------HHHHHHHHHhcc
Q 001111 909 D-------SALSLFIKSVEE 921 (1154)
Q Consensus 909 ~-------~~l~~~~~~~~~ 921 (1154)
. ..+..+++.+..
T Consensus 817 ~~~~~~~~~~~~~ll~~l~~ 836 (861)
T 2bpt_A 817 SIKQFYGQDWVIDYIKRTRS 836 (861)
T ss_dssp TTGGGTTCHHHHHHHHHHHH
T ss_pred hHHHHHhcHHHHHHHHHHhh
Confidence 2 345666666653
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=25.93 E-value=1.8e+02 Score=30.00 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhCC--------CCchhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHH
Q 001111 659 MWINQLEKDGDVVAQAQAIAALEALP--------HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLH 730 (1154)
Q Consensus 659 m~~~QL~~drDV~aQ~eAi~~L~~~~--------~~s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~ 730 (1154)
+....|..|.++..+..|+.+|+... .....+...|.+.+.|.+ -.||..|+.+|..+.....
T Consensus 60 ~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~--~~vr~~a~~aL~~~~~~~~------- 130 (242)
T 2qk2_A 60 ALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK--PNVVTALREAIDAIYASTS------- 130 (242)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTSC-------
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHcCC-------
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHH
Q 001111 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALV 810 (1154)
Q Consensus 731 L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li 810 (1154)
+..-+|.-+..+++.+...-.++..+|-.++. +.++...-..|+..++
T Consensus 131 -----------------------------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~---~~~~~~~~~~~l~~l~ 178 (242)
T 2qk2_A 131 -----------------------------LEAQQESIVESLSNKNPSVKSETALFIARALT---RTQPTALNKKLLKLLT 178 (242)
T ss_dssp -----------------------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT---TCCGGGCCHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH---HcCCCCccHHHHHHHH
Q ss_pred HHhhcc
Q 001111 811 QSVGEL 816 (1154)
Q Consensus 811 ~aL~~~ 816 (1154)
..|..+
T Consensus 179 p~l~~~ 184 (242)
T 2qk2_A 179 TSLVKT 184 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 76
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=22.65 E-value=47 Score=35.55 Aligned_cols=54 Identities=6% Similarity=-0.037 Sum_probs=28.1
Q ss_pred CccEEEeCCCccccccccCceeeeeccccccCcccchhhhhhHHHHHHHHHHhhcCCc
Q 001111 304 SYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVY 361 (1154)
Q Consensus 304 ky~~VfVp~~~~~~~~~~gagLii~s~~LL~~~~~~d~~~~~~~~IaHELAHQWFGnl 361 (1154)
.+.+.++++...++ +..++|.+.+.+.||-.-+ ...+..-+|+||++|-=-++.
T Consensus 63 ~~~v~v~~~~~~NA-fa~~gg~I~v~~gLl~~l~---~~~ELaaVLaHElgH~~~~H~ 116 (253)
T 3c37_A 63 DYVFKVVKDDSVNA-FAIPGGRVYVHTGLLKAAD---NETELAGVLAHEINHAVARHG 116 (253)
T ss_dssp CCEEEEECCCSCCE-EEETTTEEEEEHHHHHHCS---SHHHHHHHHHHHHHHHHTTHH
T ss_pred CeEEEEEeCCCCCe-eEcCCCeEEeeHHHHhhCC---CHHHHHHHHHHHHHHHHCcCH
Confidence 45666676433333 2233344555555542110 112344589999999865554
No 77
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=22.56 E-value=5.3e+02 Score=27.87 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=74.1
Q ss_pred CcHHHHHHHHHHHhCCCCc--------hhHHHHHHH-HhccCCchHHHHHHHHHHHHccccccc-------chhhHHHHH
Q 001111 669 DVVAQAQAIAALEALPHLS--------FNVVNTLNN-FLSDSKAFWRVRIEAAYALANTASEET-------DWAGLLHLV 732 (1154)
Q Consensus 669 DV~aQ~eAi~~L~~~~~~s--------~~~~~~L~~-~l~d~~~F~~VR~~Aa~aLa~~a~~~~-------~~~g~~~L~ 732 (1154)
+...+..|+..|...-... .-.+..|.. .|.++ --.||..||.+|+.++.... ...|++.|+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~--~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG--AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 4566777777777541110 012344666 66654 45899999999999875321 234789999
Q ss_pred HHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhccCCCCh-------HHHHHHHHHHhhccCCCCCCCchHHH
Q 001111 733 KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP-------REAVEFVLQLLKYNDNNGNPYSDVFW 805 (1154)
Q Consensus 733 ~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ala~vr~~~g~~p-------~~v~~fLldll~~NDNs~N~ysD~~y 805 (1154)
+..++- +. --+++....||+.+=. |..+ ..+...|+.+|+. .|.-.
T Consensus 131 ~LL~~~---~~--------------~~v~~~A~~ALsnl~~--~~~~~~~~~~~~ggi~~L~~lL~~--------~d~~v 183 (296)
T 1xqr_A 131 RLLDRD---AC--------------DTVRVKALFAISCLVR--EQEAGLLQFLRLDGFSVLMRAMQQ--------QVQKL 183 (296)
T ss_dssp HHHHHC---SC--------------HHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHHHHHHS--------SCHHH
T ss_pred HHHccC---CC--------------HHHHHHHHHHHHHHHc--CCcHHHHHHHHCCCHHHHHHHHcC--------CCHHH
Confidence 988751 11 1267777789987631 2111 1255678888862 24556
Q ss_pred HHHHHHHhhcccc
Q 001111 806 LAALVQSVGELEF 818 (1154)
Q Consensus 806 ~a~li~aL~~~~~ 818 (1154)
....+.+|+++..
T Consensus 184 ~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 184 KVKSAFLLQNLLV 196 (296)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6777777777543
Done!