Query 001112
Match_columns 1154
No_of_seqs 568 out of 2961
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 16:09:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-138 3E-143 1268.7 73.1 1009 1-1099 362-1404(1463)
2 PTZ00014 myosin-A; Provisional 100.0 8E-107 2E-111 999.5 36.8 416 1-416 396-818 (821)
3 KOG0160 Myosin class V heavy c 100.0 2E-105 4E-110 961.8 42.3 457 1-463 301-758 (862)
4 KOG0161 Myosin class II heavy 100.0 1.1E-97 2E-102 954.7 60.8 656 1-687 382-1119(1930)
5 cd01384 MYSc_type_XI Myosin mo 100.0 1.5E-98 3E-103 916.3 34.4 374 1-374 301-674 (674)
6 KOG0164 Myosin class I heavy c 100.0 9.8E-97 2E-101 833.6 32.7 434 1-444 304-755 (1001)
7 cd01380 MYSc_type_V Myosin mot 100.0 3.7E-95 8E-100 892.0 33.7 369 1-370 299-691 (691)
8 cd01381 MYSc_type_VII Myosin m 100.0 4E-95 9E-100 887.4 33.3 370 1-370 295-671 (671)
9 cd01377 MYSc_type_II Myosin mo 100.0 4.8E-95 1E-99 891.2 34.0 370 1-370 308-693 (693)
10 cd01378 MYSc_type_I Myosin mot 100.0 6.3E-95 1.4E-99 887.7 33.9 369 1-370 295-674 (674)
11 cd01387 MYSc_type_XV Myosin mo 100.0 1.6E-94 3.5E-99 882.9 34.1 369 1-370 296-677 (677)
12 cd01383 MYSc_type_VIII Myosin 100.0 1.9E-94 4.2E-99 880.6 33.9 366 1-370 298-677 (677)
13 cd01385 MYSc_type_IX Myosin mo 100.0 1.3E-93 2.9E-98 876.7 34.1 367 1-370 307-688 (692)
14 cd01382 MYSc_type_VI Myosin mo 100.0 1.2E-93 2.7E-98 880.1 33.5 367 1-369 327-715 (717)
15 cd01379 MYSc_type_III Myosin m 100.0 4.8E-93 1E-97 865.2 33.8 347 1-370 302-653 (653)
16 smart00242 MYSc Myosin. Large 100.0 3E-92 6.6E-97 868.8 34.1 371 1-371 303-677 (677)
17 cd00124 MYSc Myosin motor doma 100.0 2E-90 4.3E-95 855.7 33.7 370 1-370 296-679 (679)
18 KOG0162 Myosin class I heavy c 100.0 4.2E-91 9E-96 787.2 23.8 399 1-403 312-724 (1106)
19 cd01386 MYSc_type_XVIII Myosin 100.0 3.2E-89 6.9E-94 841.6 32.0 370 1-370 294-767 (767)
20 KOG0163 Myosin class VI heavy 100.0 3.5E-85 7.6E-90 739.3 53.4 436 1-447 381-837 (1259)
21 PF00063 Myosin_head: Myosin h 100.0 3.2E-85 6.9E-90 820.3 28.8 359 1-359 297-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 4.9E-52 1.1E-56 512.6 15.4 456 2-465 360-1008(1062)
23 KOG1892 Actin filament-binding 100.0 3.4E-31 7.4E-36 307.2 22.5 313 745-1127 542-869 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 1.8E-28 4E-33 233.1 5.8 105 974-1081 1-105 (105)
25 KOG0161 Myosin class II heavy 99.2 1.9E-08 4.2E-13 133.1 39.5 204 90-321 413-627 (1930)
26 KOG0160 Myosin class V heavy c 98.4 1.2E-06 2.5E-11 108.6 11.4 86 423-511 673-758 (862)
27 KOG0520 Uncharacterized conser 98.3 1.1E-06 2.4E-11 108.7 7.8 118 373-490 808-933 (975)
28 COG5022 Myosin heavy chain [Cy 98.2 0.00042 9E-09 89.0 26.5 89 423-511 745-834 (1463)
29 KOG0520 Uncharacterized conser 97.9 1.4E-05 3.1E-10 99.1 7.7 116 399-518 811-938 (975)
30 KOG0971 Microtubule-associated 97.9 0.021 4.6E-07 69.8 31.8 27 945-971 898-924 (1243)
31 KOG1029 Endocytic adaptor prot 97.7 0.0075 1.6E-07 72.3 23.6 68 614-681 435-509 (1118)
32 KOG1029 Endocytic adaptor prot 97.6 0.07 1.5E-06 64.5 29.9 25 994-1018 1008-1032(1118)
33 PF09726 Macoilin: Transmembra 97.4 0.046 1E-06 68.6 27.6 109 565-681 543-652 (697)
34 KOG0996 Structural maintenance 97.4 0.37 8E-06 61.5 33.9 47 1029-1078 1169-1218(1293)
35 KOG0250 DNA repair protein RAD 97.3 0.89 1.9E-05 58.2 36.6 75 612-686 390-464 (1074)
36 PF12718 Tropomyosin_1: Tropom 97.3 0.052 1.1E-06 54.6 20.8 128 525-681 11-138 (143)
37 TIGR02169 SMC_prok_A chromosom 97.2 0.67 1.5E-05 63.3 37.8 21 661-681 472-492 (1164)
38 PRK11637 AmiB activator; Provi 97.2 0.1 2.2E-06 62.8 26.4 51 634-684 202-252 (428)
39 TIGR02169 SMC_prok_A chromosom 97.1 0.93 2E-05 61.9 38.1 34 653-686 457-490 (1164)
40 KOG4229 Myosin VII, myosin IXB 97.1 0.00032 7E-09 89.7 3.7 267 244-512 644-1007(1062)
41 PF00612 IQ: IQ calmodulin-bin 97.0 0.00063 1.4E-08 44.5 2.9 20 424-443 2-21 (21)
42 PF09726 Macoilin: Transmembra 97.0 0.1 2.3E-06 65.6 24.4 80 609-688 545-652 (697)
43 KOG0164 Myosin class I heavy c 97.0 0.0064 1.4E-07 72.6 12.5 84 420-513 693-786 (1001)
44 COG1579 Zn-ribbon protein, pos 96.9 0.3 6.4E-06 53.0 23.8 54 607-660 87-140 (239)
45 PRK04863 mukB cell division pr 96.9 0.63 1.4E-05 63.5 32.2 34 653-686 444-477 (1486)
46 PRK11637 AmiB activator; Provi 96.9 0.35 7.6E-06 58.2 27.4 25 660-684 221-245 (428)
47 KOG0933 Structural maintenance 96.9 0.26 5.6E-06 61.8 25.4 29 608-636 786-814 (1174)
48 KOG0996 Structural maintenance 96.9 1.3 2.9E-05 56.8 31.7 14 334-347 208-221 (1293)
49 TIGR02168 SMC_prok_B chromosom 96.8 1 2.2E-05 61.6 34.1 35 116-150 131-165 (1179)
50 TIGR02168 SMC_prok_B chromosom 96.7 2.7 5.9E-05 57.4 37.4 10 337-346 124-133 (1179)
51 KOG1853 LIS1-interacting prote 96.7 0.61 1.3E-05 49.5 23.0 70 617-686 106-178 (333)
52 COG1196 Smc Chromosome segrega 96.6 2.1 4.6E-05 58.2 34.0 14 293-306 501-514 (1163)
53 PF00261 Tropomyosin: Tropomyo 96.5 0.8 1.7E-05 50.4 24.3 29 653-681 192-220 (237)
54 KOG0933 Structural maintenance 96.5 2.8 6.2E-05 53.1 30.6 13 138-150 157-169 (1174)
55 KOG0971 Microtubule-associated 96.5 4 8.6E-05 51.0 33.6 43 646-688 506-548 (1243)
56 PF07888 CALCOCO1: Calcium bin 96.5 0.4 8.7E-06 57.7 22.6 21 525-545 161-181 (546)
57 PRK02224 chromosome segregatio 96.4 5.8 0.00012 52.6 37.2 22 344-366 122-143 (880)
58 COG4942 Membrane-bound metallo 96.4 1 2.3E-05 52.5 24.7 42 641-682 207-248 (420)
59 PF14662 CCDC155: Coiled-coil 96.4 1.4 3.1E-05 45.7 22.9 29 653-681 160-188 (193)
60 PF07888 CALCOCO1: Calcium bin 96.4 0.59 1.3E-05 56.3 23.3 23 522-544 151-173 (546)
61 PF12718 Tropomyosin_1: Tropom 96.3 0.81 1.8E-05 46.1 21.0 60 627-686 77-136 (143)
62 KOG2128 Ras GTPase-activating 96.3 0.064 1.4E-06 69.4 16.0 91 428-518 540-646 (1401)
63 KOG0250 DNA repair protein RAD 96.3 5.5 0.00012 51.4 35.9 9 405-413 184-192 (1074)
64 PF00261 Tropomyosin: Tropomyo 96.3 0.16 3.5E-06 55.9 17.1 19 561-579 37-55 (237)
65 PRK02224 chromosome segregatio 96.3 3 6.5E-05 55.2 32.2 9 1085-1093 824-832 (880)
66 PF08317 Spc7: Spc7 kinetochor 96.2 1.4 3E-05 50.9 25.1 81 607-687 207-291 (325)
67 PF00612 IQ: IQ calmodulin-bin 96.2 0.0067 1.4E-07 39.7 3.4 19 472-490 2-20 (21)
68 COG1196 Smc Chromosome segrega 96.1 10 0.00022 51.8 39.4 17 1005-1021 946-962 (1163)
69 PRK09039 hypothetical protein; 96.0 0.9 2E-05 52.7 22.4 30 523-552 48-77 (343)
70 KOG0163 Myosin class VI heavy 96.0 3.9 8.4E-05 50.0 27.3 58 427-493 778-835 (1259)
71 KOG4643 Uncharacterized coiled 96.0 3 6.4E-05 52.8 27.0 48 524-582 173-220 (1195)
72 PHA02562 46 endonuclease subun 95.9 0.86 1.9E-05 57.0 23.5 27 608-634 298-324 (562)
73 PF14662 CCDC155: Coiled-coil 95.9 2.6 5.6E-05 43.9 22.1 79 609-687 102-187 (193)
74 PRK03918 chromosome segregatio 95.9 0.72 1.6E-05 61.0 23.7 34 651-684 666-699 (880)
75 KOG4673 Transcription factor T 95.9 6.3 0.00014 47.9 28.6 13 66-78 9-21 (961)
76 PRK04863 mukB cell division pr 95.8 13 0.00028 51.3 34.8 32 651-682 449-480 (1486)
77 smart00015 IQ Short calmodulin 95.8 0.008 1.7E-07 41.6 2.5 21 423-443 3-23 (26)
78 PF15070 GOLGA2L5: Putative go 95.7 1.6 3.4E-05 54.4 23.8 78 609-686 153-230 (617)
79 KOG0976 Rho/Rac1-interacting s 95.7 2.8 6E-05 51.5 24.4 36 651-686 270-305 (1265)
80 PF12128 DUF3584: Protein of u 95.7 14 0.00031 50.5 38.5 27 1071-1098 1054-1081(1201)
81 KOG0980 Actin-binding protein 95.7 2.6 5.7E-05 52.6 24.5 37 1033-1072 850-887 (980)
82 KOG0977 Nuclear envelope prote 95.6 0.92 2E-05 54.7 20.5 76 610-685 107-182 (546)
83 PF15397 DUF4618: Domain of un 95.6 4.5 9.9E-05 44.4 24.2 32 657-688 192-223 (258)
84 PF12128 DUF3584: Protein of u 95.6 15 0.00033 50.2 37.7 20 666-685 512-531 (1201)
85 PF15066 CAGE1: Cancer-associa 95.5 3.1 6.7E-05 48.4 22.8 23 664-686 491-513 (527)
86 KOG1103 Predicted coiled-coil 95.4 4 8.6E-05 45.5 22.5 52 635-686 243-294 (561)
87 KOG0994 Extracellular matrix g 95.4 12 0.00027 48.1 29.3 19 665-683 1724-1742(1758)
88 PF15619 Lebercilin: Ciliary p 95.4 3.7 8.1E-05 43.5 21.9 27 611-637 120-146 (194)
89 KOG0977 Nuclear envelope prote 95.4 4.2 9E-05 49.3 24.6 70 615-684 295-368 (546)
90 PHA02562 46 endonuclease subun 95.3 3.5 7.5E-05 51.6 25.5 12 295-306 43-54 (562)
91 KOG0980 Actin-binding protein 95.3 7.5 0.00016 48.8 26.6 12 1059-1070 933-944 (980)
92 PRK03918 chromosome segregatio 95.1 1.7 3.6E-05 57.6 23.1 76 611-686 628-708 (880)
93 PF04849 HAP1_N: HAP1 N-termin 95.1 5.1 0.00011 45.1 22.6 76 611-686 222-304 (306)
94 KOG4643 Uncharacterized coiled 95.0 3.4 7.4E-05 52.3 23.0 16 73-88 30-45 (1195)
95 PF10473 CENP-F_leu_zip: Leuci 95.0 2.4 5.2E-05 42.3 18.0 22 615-636 79-100 (140)
96 TIGR00606 rad50 rad50. This fa 95.0 7.9 0.00017 53.5 29.5 20 522-541 844-863 (1311)
97 KOG1003 Actin filament-coating 95.0 5.2 0.00011 41.5 21.7 72 609-680 109-187 (205)
98 PRK09039 hypothetical protein; 95.0 0.69 1.5E-05 53.7 16.5 54 525-582 43-96 (343)
99 KOG0018 Structural maintenance 94.9 14 0.00029 47.8 28.0 33 1117-1152 1074-1107(1141)
100 smart00787 Spc7 Spc7 kinetocho 94.9 5 0.00011 45.9 22.8 15 673-687 272-286 (312)
101 COG3883 Uncharacterized protei 94.9 6.8 0.00015 43.2 22.6 17 562-578 82-98 (265)
102 PF09755 DUF2046: Uncharacteri 94.9 6 0.00013 44.4 22.4 15 565-579 82-96 (310)
103 KOG0995 Centromere-associated 94.9 12 0.00026 45.1 27.9 18 520-537 307-324 (581)
104 KOG2128 Ras GTPase-activating 94.8 0.37 8E-06 62.8 14.6 114 381-494 513-645 (1401)
105 PF08317 Spc7: Spc7 kinetochor 94.7 3.8 8.3E-05 47.3 21.8 15 665-679 276-290 (325)
106 PTZ00014 myosin-A; Provisional 94.7 0.037 8E-07 70.8 5.6 40 425-464 779-818 (821)
107 PF10481 CENP-F_N: Cenp-F N-te 94.7 1.6 3.5E-05 47.3 16.6 71 619-689 63-133 (307)
108 PF06785 UPF0242: Uncharacteri 94.5 9.5 0.00021 42.6 22.3 79 608-686 133-222 (401)
109 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.5 2.4 5.2E-05 42.2 16.8 30 658-687 98-127 (132)
110 KOG1853 LIS1-interacting prote 94.5 8.2 0.00018 41.4 22.5 26 662-687 161-186 (333)
111 KOG0999 Microtubule-associated 94.5 5.1 0.00011 47.4 21.2 23 665-687 194-216 (772)
112 TIGR03185 DNA_S_dndD DNA sulfu 94.3 12 0.00025 47.8 26.7 34 651-684 428-461 (650)
113 PF04091 Sec15: Exocyst comple 94.3 0.21 4.5E-06 57.2 10.0 133 943-1076 176-311 (311)
114 PF05483 SCP-1: Synaptonemal c 94.2 9.4 0.0002 46.7 23.3 48 642-689 578-625 (786)
115 KOG0982 Centrosomal protein Nu 94.2 12 0.00025 43.4 22.7 24 663-686 365-388 (502)
116 smart00787 Spc7 Spc7 kinetocho 94.1 14 0.0003 42.3 24.3 77 610-686 180-260 (312)
117 PF04849 HAP1_N: HAP1 N-termin 94.0 2.5 5.3E-05 47.5 17.1 66 613-678 238-303 (306)
118 KOG0976 Rho/Rac1-interacting s 94.0 22 0.00047 44.2 29.6 7 1012-1018 954-960 (1265)
119 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.9 6.3 0.00014 39.2 18.5 30 646-675 100-129 (132)
120 KOG4360 Uncharacterized coiled 93.9 4.1 8.9E-05 47.9 19.0 76 611-686 228-303 (596)
121 smart00015 IQ Short calmodulin 93.9 0.061 1.3E-06 37.2 2.8 20 471-490 3-22 (26)
122 COG4372 Uncharacterized protei 93.8 15 0.00033 41.9 24.5 69 611-679 212-280 (499)
123 COG1340 Uncharacterized archae 93.8 11 0.00024 42.2 21.4 14 662-675 232-245 (294)
124 KOG2129 Uncharacterized conser 93.7 15 0.00032 42.3 22.3 11 472-482 85-95 (552)
125 PF10174 Cast: RIM-binding pro 93.6 10 0.00022 48.5 23.7 28 559-586 335-362 (775)
126 KOG0249 LAR-interacting protei 93.3 11 0.00024 46.3 21.6 20 995-1022 756-775 (916)
127 COG3883 Uncharacterized protei 93.2 16 0.00034 40.4 22.2 62 521-586 38-99 (265)
128 KOG0978 E3 ubiquitin ligase in 93.2 30 0.00065 43.4 35.4 78 611-688 540-617 (698)
129 PF13851 GAS: Growth-arrest sp 93.1 14 0.00031 39.5 22.5 73 612-684 96-169 (201)
130 PF09789 DUF2353: Uncharacteri 93.1 20 0.00042 40.9 25.2 28 660-687 191-218 (319)
131 PF15619 Lebercilin: Ciliary p 93.0 14 0.00031 39.2 23.2 28 618-645 120-147 (194)
132 PF05667 DUF812: Protein of un 92.9 8.9 0.00019 47.7 21.2 16 188-205 79-94 (594)
133 KOG0612 Rho-associated, coiled 92.8 43 0.00093 44.1 27.4 72 613-684 620-693 (1317)
134 KOG0964 Structural maintenance 92.8 13 0.00028 47.4 21.8 34 653-686 462-495 (1200)
135 PRK04778 septation ring format 92.7 16 0.00035 45.7 23.7 12 351-362 59-70 (569)
136 PF08614 ATG16: Autophagy prot 92.3 1.1 2.3E-05 47.9 10.8 77 610-686 103-179 (194)
137 TIGR01843 type_I_hlyD type I s 92.3 19 0.0004 43.1 23.1 24 663-686 244-267 (423)
138 KOG0612 Rho-associated, coiled 92.3 49 0.0011 43.6 29.8 37 182-218 212-253 (1317)
139 PF04437 RINT1_TIP1: RINT-1 / 92.2 3.6 7.8E-05 50.5 16.9 125 943-1073 352-491 (494)
140 PF07111 HCR: Alpha helical co 92.2 38 0.00082 42.1 25.1 24 663-686 240-263 (739)
141 PF05911 DUF869: Plant protein 92.2 15 0.00032 47.0 22.1 38 634-671 124-161 (769)
142 PRK01156 chromosome segregatio 92.1 53 0.0012 43.6 36.4 33 654-686 412-444 (895)
143 PF10168 Nup88: Nuclear pore c 92.1 13 0.00028 47.5 21.7 30 612-641 635-664 (717)
144 PF09730 BicD: Microtubule-ass 92.0 25 0.00055 44.5 23.6 76 611-686 99-177 (717)
145 KOG4674 Uncharacterized conser 91.8 71 0.0015 44.4 37.4 72 525-596 763-834 (1822)
146 PF09728 Taxilin: Myosin-like 91.8 28 0.00061 39.9 31.8 80 607-686 221-300 (309)
147 PF15254 CCDC14: Coiled-coil d 91.8 22 0.00048 44.4 21.9 41 613-653 491-531 (861)
148 TIGR02680 conserved hypothetic 91.8 26 0.00056 48.6 25.7 19 1002-1020 1118-1136(1353)
149 PF04156 IncA: IncA protein; 91.7 6.1 0.00013 41.8 15.9 17 662-678 169-185 (191)
150 PF08614 ATG16: Autophagy prot 91.5 2.3 5.1E-05 45.2 12.4 69 608-676 115-183 (194)
151 KOG1899 LAR transmembrane tyro 91.5 4.6 9.9E-05 48.5 15.3 22 1001-1022 707-728 (861)
152 COG2433 Uncharacterized conser 91.5 3.8 8.1E-05 49.5 14.9 79 608-686 428-509 (652)
153 PF13870 DUF4201: Domain of un 91.4 20 0.00044 37.4 21.7 36 611-646 86-121 (177)
154 KOG0982 Centrosomal protein Nu 91.3 18 0.00039 42.0 19.2 17 673-689 404-420 (502)
155 PRK04778 septation ring format 91.1 50 0.0011 41.4 31.2 15 569-583 284-298 (569)
156 PRK10884 SH3 domain-containing 91.0 2.7 5.9E-05 45.0 12.2 76 608-686 92-167 (206)
157 PF15070 GOLGA2L5: Putative go 91.0 52 0.0011 41.4 30.6 11 1111-1121 594-604 (617)
158 TIGR02680 conserved hypothetic 91.0 84 0.0018 43.7 30.0 19 428-446 725-743 (1353)
159 PF04012 PspA_IM30: PspA/IM30 90.9 24 0.00053 38.2 20.0 76 609-684 98-184 (221)
160 KOG0979 Structural maintenance 90.4 33 0.00071 44.2 22.1 28 947-974 836-864 (1072)
161 PF10481 CENP-F_N: Cenp-F N-te 90.3 32 0.00068 37.8 19.3 26 662-687 166-191 (307)
162 KOG4674 Uncharacterized conser 90.3 95 0.0021 43.3 32.7 26 520-545 695-720 (1822)
163 KOG0964 Structural maintenance 90.2 30 0.00065 44.3 21.2 17 1060-1076 946-962 (1200)
164 PF04111 APG6: Autophagy prote 90.1 4.6 0.0001 46.3 13.9 33 655-687 103-135 (314)
165 COG4026 Uncharacterized protei 90.1 2.6 5.7E-05 44.1 10.5 41 610-650 143-183 (290)
166 KOG0979 Structural maintenance 90.0 53 0.0011 42.5 23.4 10 750-759 486-495 (1072)
167 TIGR01005 eps_transp_fam exopo 89.9 30 0.00065 45.0 22.9 18 1055-1072 659-676 (754)
168 PRK10884 SH3 domain-containing 89.9 3.1 6.7E-05 44.6 11.4 73 613-688 90-162 (206)
169 TIGR01843 type_I_hlyD type I s 89.8 38 0.00082 40.4 22.3 69 614-682 201-270 (423)
170 PF00038 Filament: Intermediat 89.6 43 0.00094 38.3 32.6 72 611-682 211-286 (312)
171 PF09789 DUF2353: Uncharacteri 89.6 22 0.00047 40.6 18.2 83 608-690 78-172 (319)
172 PF00038 Filament: Intermediat 89.5 45 0.00097 38.2 33.8 28 524-551 71-98 (312)
173 KOG1003 Actin filament-coating 89.5 30 0.00065 36.2 22.9 77 609-685 123-199 (205)
174 COG4372 Uncharacterized protei 89.4 46 0.00099 38.2 28.5 13 659-671 267-279 (499)
175 KOG0946 ER-Golgi vesicle-tethe 89.2 72 0.0016 40.3 24.3 37 651-687 848-884 (970)
176 KOG4673 Transcription factor T 89.0 67 0.0015 39.6 29.8 21 664-684 611-631 (961)
177 KOG0946 ER-Golgi vesicle-tethe 88.9 41 0.00088 42.3 20.8 25 608-632 736-760 (970)
178 PF04111 APG6: Autophagy prote 88.9 6.1 0.00013 45.4 13.7 75 613-687 54-128 (314)
179 COG1340 Uncharacterized archae 88.9 45 0.00097 37.5 24.2 21 613-633 162-182 (294)
180 PF14915 CCDC144C: CCDC144C pr 88.7 45 0.00098 37.3 30.4 34 655-688 204-237 (305)
181 TIGR03007 pepcterm_ChnLen poly 88.6 43 0.00093 41.2 22.0 23 663-685 322-344 (498)
182 COG5185 HEC1 Protein involved 88.6 58 0.0013 38.4 21.0 15 948-962 603-617 (622)
183 PF14197 Cep57_CLD_2: Centroso 88.5 4.8 0.0001 35.1 9.5 61 613-673 2-62 (69)
184 PF13514 AAA_27: AAA domain 88.5 1.1E+02 0.0025 41.6 31.6 35 560-594 801-835 (1111)
185 KOG2991 Splicing regulator [RN 88.2 42 0.00091 36.3 24.3 51 636-686 256-306 (330)
186 PLN02939 transferase, transfer 87.9 55 0.0012 42.9 22.2 27 1067-1095 852-879 (977)
187 PRK10698 phage shock protein P 87.9 45 0.00098 36.3 23.2 76 608-683 98-184 (222)
188 PF05010 TACC: Transforming ac 87.9 42 0.00092 36.0 25.6 37 649-685 159-195 (207)
189 PF09755 DUF2046: Uncharacteri 87.7 54 0.0012 37.1 26.7 44 637-686 156-199 (310)
190 PF10168 Nup88: Nuclear pore c 87.5 92 0.002 40.0 24.0 61 523-583 602-662 (717)
191 PRK11281 hypothetical protein; 87.4 18 0.00038 48.4 18.1 26 608-633 191-216 (1113)
192 PF10498 IFT57: Intra-flagella 87.3 29 0.00063 40.5 18.0 6 278-283 63-68 (359)
193 PRK10929 putative mechanosensi 87.3 24 0.00051 47.2 19.1 27 607-633 171-197 (1109)
194 PF10205 KLRAQ: Predicted coil 87.1 10 0.00022 35.5 11.2 72 614-685 3-74 (102)
195 PF08826 DMPK_coil: DMPK coile 87.1 9.3 0.0002 32.4 10.0 39 640-678 21-59 (61)
196 KOG0804 Cytoplasmic Zn-finger 87.0 22 0.00047 41.7 16.1 19 665-683 428-446 (493)
197 PF14197 Cep57_CLD_2: Centroso 87.0 9.2 0.0002 33.4 10.3 66 620-685 2-67 (69)
198 KOG1962 B-cell receptor-associ 86.8 4.6 9.9E-05 43.1 10.0 38 651-688 172-209 (216)
199 PF09730 BicD: Microtubule-ass 86.8 64 0.0014 41.0 21.5 29 609-637 359-387 (717)
200 COG2433 Uncharacterized conser 86.6 12 0.00026 45.5 14.3 15 131-146 59-73 (652)
201 COG0497 RecN ATPase involved i 86.2 82 0.0018 38.8 21.4 30 658-687 342-371 (557)
202 PF05667 DUF812: Protein of un 85.8 1.1E+02 0.0023 38.5 31.5 23 664-686 570-592 (594)
203 PF10186 Atg14: UV radiation r 85.7 37 0.0008 38.4 18.0 28 659-686 120-147 (302)
204 COG1382 GimC Prefoldin, chaper 85.7 22 0.00047 34.5 13.0 75 612-686 23-112 (119)
205 PF10186 Atg14: UV radiation r 85.6 53 0.0011 37.2 19.1 20 661-680 129-148 (302)
206 COG4942 Membrane-bound metallo 85.6 85 0.0018 37.2 29.8 32 654-685 213-244 (420)
207 PF01576 Myosin_tail_1: Myosin 85.3 0.26 5.6E-06 64.2 0.0 74 610-683 427-500 (859)
208 PF01576 Myosin_tail_1: Myosin 85.1 0.27 5.8E-06 64.0 0.0 44 613-656 318-361 (859)
209 PF09304 Cortex-I_coil: Cortex 84.9 15 0.00033 34.5 11.2 28 614-641 35-62 (107)
210 KOG0804 Cytoplasmic Zn-finger 84.8 59 0.0013 38.3 18.2 17 662-678 432-448 (493)
211 KOG4360 Uncharacterized coiled 84.7 28 0.00062 41.3 15.7 79 608-686 218-296 (596)
212 PF09728 Taxilin: Myosin-like 84.6 82 0.0018 36.1 24.9 31 657-687 236-266 (309)
213 PF10174 Cast: RIM-binding pro 84.5 1.4E+02 0.003 38.7 31.4 15 246-260 152-166 (775)
214 PF10146 zf-C4H2: Zinc finger- 84.4 54 0.0012 35.9 17.1 30 658-687 74-103 (230)
215 KOG0249 LAR-interacting protei 83.2 68 0.0015 39.8 18.4 26 611-636 232-257 (916)
216 PF10212 TTKRSYEDQ: Predicted 83.1 1.2E+02 0.0026 36.9 20.4 19 242-260 167-185 (518)
217 KOG1962 B-cell receptor-associ 83.1 71 0.0015 34.3 17.1 21 427-447 79-99 (216)
218 KOG4593 Mitotic checkpoint pro 82.7 1.4E+02 0.003 37.3 27.7 23 470-492 85-107 (716)
219 KOG0243 Kinesin-like protein [ 82.6 54 0.0012 42.9 18.5 41 247-287 163-219 (1041)
220 COG3074 Uncharacterized protei 82.4 13 0.00027 31.9 8.6 32 655-686 29-60 (79)
221 TIGR00634 recN DNA repair prot 82.3 1.1E+02 0.0024 38.3 21.3 29 659-687 347-375 (563)
222 PF12777 MT: Microtubule-bindi 82.3 1.1E+02 0.0023 35.8 20.5 48 632-679 230-277 (344)
223 PF13514 AAA_27: AAA domain 82.2 1.3E+02 0.0028 41.2 23.4 23 294-317 11-33 (1111)
224 PF11559 ADIP: Afadin- and alp 81.8 26 0.00055 35.6 12.9 26 614-639 64-89 (151)
225 PRK12704 phosphodiesterase; Pr 81.8 55 0.0012 40.4 17.9 12 1032-1043 416-427 (520)
226 PRK10361 DNA recombination pro 81.5 1.3E+02 0.0029 36.4 25.0 12 794-805 279-290 (475)
227 KOG0999 Microtubule-associated 81.5 1.3E+02 0.0029 36.3 26.7 20 611-630 172-191 (772)
228 KOG4809 Rab6 GTPase-interactin 81.3 1E+02 0.0022 37.2 18.5 16 560-575 338-353 (654)
229 PF13870 DUF4201: Domain of un 81.2 74 0.0016 33.2 19.1 54 633-686 80-133 (177)
230 KOG0978 E3 ubiquitin ligase in 81.2 1.6E+02 0.0036 37.2 32.9 79 610-688 525-603 (698)
231 PRK11281 hypothetical protein; 80.9 55 0.0012 44.0 18.5 24 614-637 126-149 (1113)
232 KOG3684 Ca2+-activated K+ chan 80.9 65 0.0014 38.1 16.7 38 454-491 347-384 (489)
233 PF07889 DUF1664: Protein of u 80.9 17 0.00036 35.7 10.4 66 613-678 58-123 (126)
234 PF10146 zf-C4H2: Zinc finger- 80.6 61 0.0013 35.4 15.8 62 612-680 42-103 (230)
235 TIGR03007 pepcterm_ChnLen poly 80.5 1.5E+02 0.0033 36.4 25.3 66 614-683 315-380 (498)
236 PRK00106 hypothetical protein; 80.0 1.4E+02 0.003 36.9 20.2 130 549-687 25-154 (535)
237 PTZ00121 MAEBL; Provisional 79.8 2.4E+02 0.0053 38.3 33.9 6 267-272 827-832 (2084)
238 KOG4593 Mitotic checkpoint pro 79.6 1.8E+02 0.0038 36.5 32.1 24 1057-1080 631-661 (716)
239 PF09738 DUF2051: Double stran 79.5 41 0.00088 38.3 14.5 66 613-678 102-167 (302)
240 PRK04406 hypothetical protein; 79.3 14 0.0003 32.9 8.4 20 628-647 9-28 (75)
241 PF13851 GAS: Growth-arrest sp 79.2 95 0.0021 33.2 23.8 76 611-686 88-164 (201)
242 PF03962 Mnd1: Mnd1 family; I 79.1 18 0.00039 38.3 10.9 76 612-687 65-150 (188)
243 KOG4807 F-actin binding protei 79.1 1.3E+02 0.0028 34.7 22.5 28 659-686 513-540 (593)
244 TIGR03319 YmdA_YtgF conserved 78.8 94 0.002 38.3 18.5 114 562-687 20-133 (514)
245 PF05911 DUF869: Plant protein 78.7 2.1E+02 0.0046 37.0 24.8 79 608-686 119-204 (769)
246 PF15456 Uds1: Up-regulated Du 78.7 32 0.0007 33.8 11.6 80 607-687 20-110 (124)
247 PF06818 Fez1: Fez1; InterPro 78.7 43 0.00094 35.5 13.3 20 667-686 133-152 (202)
248 KOG2129 Uncharacterized conser 78.5 1.4E+02 0.003 34.8 20.8 18 611-628 255-272 (552)
249 KOG0963 Transcription factor/C 78.2 1.8E+02 0.0039 35.9 29.0 28 660-687 237-264 (629)
250 PRK15422 septal ring assembly 78.1 34 0.00073 30.4 10.2 23 616-638 18-40 (79)
251 KOG1937 Uncharacterized conser 78.1 1.5E+02 0.0033 35.0 22.7 27 661-687 392-418 (521)
252 PRK15422 septal ring assembly 78.1 19 0.0004 32.0 8.6 32 655-686 29-60 (79)
253 PF04102 SlyX: SlyX; InterPro 78.0 11 0.00024 32.9 7.5 42 631-672 5-46 (69)
254 KOG2891 Surface glycoprotein [ 77.8 1.1E+02 0.0025 33.4 18.4 28 293-320 107-138 (445)
255 TIGR02977 phageshock_pspA phag 77.3 1.1E+02 0.0025 33.1 24.2 75 608-682 98-183 (219)
256 PF11932 DUF3450: Protein of u 76.9 1.1E+02 0.0024 33.9 17.1 27 617-643 71-97 (251)
257 PF10226 DUF2216: Uncharacteri 76.6 1E+02 0.0022 32.2 16.3 80 610-689 56-139 (195)
258 PF08826 DMPK_coil: DMPK coile 76.3 41 0.00089 28.6 10.0 31 655-685 29-59 (61)
259 PF11932 DUF3450: Protein of u 76.3 33 0.00071 38.1 12.6 72 610-681 43-114 (251)
260 PF15397 DUF4618: Domain of un 76.0 1.3E+02 0.0029 33.3 27.6 25 662-686 190-214 (258)
261 cd00632 Prefoldin_beta Prefold 76.0 55 0.0012 31.0 12.3 30 654-683 73-102 (105)
262 PF07106 TBPIP: Tat binding pr 76.0 12 0.00027 38.8 8.6 67 608-686 71-137 (169)
263 PF07106 TBPIP: Tat binding pr 75.9 12 0.00025 38.9 8.4 23 611-633 81-103 (169)
264 PLN03188 kinesin-12 family pro 75.7 3E+02 0.0065 37.2 30.4 41 96-137 201-248 (1320)
265 KOG4603 TBP-1 interacting prot 75.7 26 0.00055 35.7 10.0 66 609-686 79-144 (201)
266 PF09304 Cortex-I_coil: Cortex 75.3 76 0.0016 30.1 16.0 20 526-545 7-26 (107)
267 PRK02119 hypothetical protein; 75.3 17 0.00037 32.1 7.9 17 629-645 8-24 (73)
268 KOG4302 Microtubule-associated 74.5 1.8E+02 0.004 36.6 19.1 79 519-597 59-140 (660)
269 PLN02939 transferase, transfer 74.3 3E+02 0.0065 36.5 22.3 13 1033-1045 851-863 (977)
270 KOG0018 Structural maintenance 74.3 2.9E+02 0.0064 36.4 32.2 44 266-313 27-75 (1141)
271 PF05701 WEMBL: Weak chloropla 74.2 2.3E+02 0.005 35.1 30.4 78 609-686 337-421 (522)
272 PRK02793 phi X174 lysis protei 73.1 21 0.00045 31.5 7.9 18 630-647 8-25 (72)
273 PRK04325 hypothetical protein; 73.1 22 0.00047 31.6 8.0 42 629-670 8-49 (74)
274 KOG0243 Kinesin-like protein [ 73.1 1.6E+02 0.0034 38.9 18.5 8 352-359 357-364 (1041)
275 KOG4364 Chromatin assembly fac 73.0 2E+02 0.0044 35.6 18.2 13 970-982 651-663 (811)
276 PF05557 MAD: Mitotic checkpoi 72.9 1.1 2.5E-05 57.5 0.0 56 512-582 272-327 (722)
277 PRK00846 hypothetical protein; 72.8 25 0.00053 31.4 8.2 19 629-647 12-30 (77)
278 TIGR02338 gimC_beta prefoldin, 72.2 78 0.0017 30.3 12.4 30 653-682 76-105 (110)
279 PF10211 Ax_dynein_light: Axon 72.2 1.4E+02 0.003 31.7 15.9 26 521-546 127-152 (189)
280 PF15290 Syntaphilin: Golgi-lo 71.8 1.3E+02 0.0029 33.3 15.0 27 611-637 119-145 (305)
281 PF05266 DUF724: Protein of un 71.7 46 0.001 35.2 11.6 20 665-684 159-178 (190)
282 KOG0239 Kinesin (KAR3 subfamil 71.7 1.6E+02 0.0034 37.6 18.2 19 813-831 481-500 (670)
283 KOG4427 E3 ubiquitin protein l 71.6 4.2 9.2E-05 49.9 4.2 24 420-443 27-50 (1096)
284 PF13863 DUF4200: Domain of un 71.5 1E+02 0.0023 30.0 17.4 33 654-686 77-109 (126)
285 PF03962 Mnd1: Mnd1 family; I 71.4 1E+02 0.0022 32.7 14.1 23 524-546 72-94 (188)
286 PRK13729 conjugal transfer pil 71.2 13 0.00027 44.4 8.0 17 628-644 74-90 (475)
287 KOG4403 Cell surface glycoprot 71.2 2.2E+02 0.0047 33.5 22.0 16 567-582 309-324 (575)
288 KOG0963 Transcription factor/C 71.2 2.7E+02 0.0058 34.6 30.4 25 522-546 190-214 (629)
289 PF10267 Tmemb_cc2: Predicted 71.0 1.2E+02 0.0026 35.9 15.8 18 661-678 301-318 (395)
290 PF10211 Ax_dynein_light: Axon 70.8 1.5E+02 0.0032 31.5 15.7 14 498-511 75-88 (189)
291 PF01920 Prefoldin_2: Prefoldi 70.4 92 0.002 29.2 12.5 28 658-685 69-96 (106)
292 KOG1899 LAR transmembrane tyro 70.4 2.7E+02 0.0059 34.3 19.5 24 892-915 552-576 (861)
293 PF06637 PV-1: PV-1 protein (P 70.3 1.4E+02 0.003 34.6 15.2 110 533-655 279-388 (442)
294 PTZ00121 MAEBL; Provisional 70.3 4.1E+02 0.0089 36.4 34.1 14 184-197 777-790 (2084)
295 KOG4001 Axonemal dynein light 69.9 63 0.0014 33.8 11.5 58 520-577 191-252 (259)
296 PRK10869 recombination and rep 69.9 2.9E+02 0.0063 34.5 22.1 31 657-687 340-370 (553)
297 PRK09343 prefoldin subunit bet 69.9 1.1E+02 0.0024 29.9 13.0 40 647-686 74-113 (121)
298 PRK00295 hypothetical protein; 69.8 32 0.00068 30.0 8.2 39 632-670 7-45 (68)
299 KOG0162 Myosin class I heavy c 69.4 6.6 0.00014 48.1 5.2 28 424-451 697-724 (1106)
300 COG5185 HEC1 Protein involved 69.1 2.5E+02 0.0054 33.4 28.0 22 488-509 302-323 (622)
301 PF05266 DUF724: Protein of un 69.0 75 0.0016 33.7 12.5 26 655-680 156-181 (190)
302 PRK00736 hypothetical protein; 69.0 27 0.00058 30.4 7.6 39 632-670 7-45 (68)
303 COG2900 SlyX Uncharacterized p 68.9 31 0.00067 30.1 7.7 52 628-686 6-57 (72)
304 PF14389 Lzipper-MIP1: Leucine 68.9 29 0.00064 31.8 8.2 57 526-582 6-76 (88)
305 PF07798 DUF1640: Protein of u 68.9 1.5E+02 0.0033 30.9 16.0 24 610-633 74-97 (177)
306 COG1842 PspA Phage shock prote 68.7 1.8E+02 0.004 31.7 22.7 19 664-682 165-183 (225)
307 PF08172 CASP_C: CASP C termin 68.6 49 0.0011 36.6 11.4 38 647-684 89-126 (248)
308 PF01920 Prefoldin_2: Prefoldi 68.6 76 0.0016 29.7 11.6 35 648-682 66-100 (106)
309 COG1382 GimC Prefoldin, chaper 68.4 97 0.0021 30.1 11.8 78 610-687 14-106 (119)
310 PF14915 CCDC144C: CCDC144C pr 68.3 2.1E+02 0.0046 32.2 26.3 111 564-681 183-294 (305)
311 KOG2264 Exostosin EXT1L [Signa 68.3 38 0.00083 40.6 10.8 60 629-688 92-151 (907)
312 PF05557 MAD: Mitotic checkpoi 68.2 1.7 3.6E-05 56.1 0.0 8 1069-1076 656-663 (722)
313 PF10205 KLRAQ: Predicted coil 68.2 92 0.002 29.4 11.2 64 623-686 5-68 (102)
314 PF10267 Tmemb_cc2: Predicted 68.1 2.1E+02 0.0045 34.0 16.9 17 615-631 275-291 (395)
315 KOG0942 E3 ubiquitin protein l 68.0 4.7 0.0001 50.7 3.8 30 418-447 24-53 (1001)
316 KOG2751 Beclin-like protein [S 67.9 1.6E+02 0.0034 34.9 15.4 29 660-688 241-269 (447)
317 KOG0239 Kinesin (KAR3 subfamil 67.8 1.3E+02 0.0029 38.2 16.4 16 530-545 177-192 (670)
318 PRK04406 hypothetical protein; 67.7 37 0.00081 30.2 8.3 22 622-643 10-31 (75)
319 PF05010 TACC: Transforming ac 67.6 1.8E+02 0.004 31.2 24.8 26 659-684 162-187 (207)
320 PF06818 Fez1: Fez1; InterPro 67.3 88 0.0019 33.3 12.3 71 618-688 33-103 (202)
321 PF02403 Seryl_tRNA_N: Seryl-t 67.3 29 0.00062 33.0 8.3 73 608-684 28-100 (108)
322 PF15254 CCDC14: Coiled-coil d 67.2 3.5E+02 0.0076 34.4 26.6 55 525-579 391-446 (861)
323 PF15175 SPATA24: Spermatogene 66.9 1.4E+02 0.0031 29.8 13.9 27 570-596 13-39 (153)
324 PF05384 DegS: Sensor protein 66.3 1.6E+02 0.0035 30.2 21.2 52 634-685 102-153 (159)
325 PF15188 CCDC-167: Coiled-coil 66.2 29 0.00063 31.6 7.4 62 616-688 5-66 (85)
326 PRK10246 exonuclease subunit S 66.2 4.7E+02 0.01 35.5 24.4 28 608-635 776-803 (1047)
327 PF10498 IFT57: Intra-flagella 66.0 2.7E+02 0.0059 32.7 17.7 9 502-510 216-224 (359)
328 PF10234 Cluap1: Clusterin-ass 66.0 2.1E+02 0.0046 32.0 15.6 47 611-657 171-217 (267)
329 PF07889 DUF1664: Protein of u 65.8 1E+02 0.0022 30.3 11.7 54 631-684 69-122 (126)
330 PF12777 MT: Microtubule-bindi 65.8 2.7E+02 0.0058 32.5 20.5 26 513-538 7-32 (344)
331 TIGR03752 conj_TIGR03752 integ 65.8 57 0.0012 39.1 11.8 21 661-681 119-139 (472)
332 KOG4809 Rab6 GTPase-interactin 65.5 3.2E+02 0.0069 33.3 21.1 41 608-648 420-460 (654)
333 COG0419 SbcC ATPase involved i 64.9 4.6E+02 0.01 35.0 29.4 37 950-986 740-776 (908)
334 TIGR01000 bacteriocin_acc bact 64.6 3.3E+02 0.0071 33.1 25.0 25 662-686 288-312 (457)
335 PF13166 AAA_13: AAA domain 64.5 4.1E+02 0.0089 34.2 24.1 31 657-687 423-453 (712)
336 KOG2685 Cystoskeletal protein 64.4 3E+02 0.0064 32.5 22.6 35 503-541 84-118 (421)
337 KOG0288 WD40 repeat protein Ti 64.2 2.9E+02 0.0064 32.4 17.1 13 816-828 244-256 (459)
338 PF14992 TMCO5: TMCO5 family 64.0 2.3E+02 0.0049 31.8 15.2 9 634-642 127-135 (280)
339 PF15294 Leu_zip: Leucine zipp 63.7 2.5E+02 0.0055 31.5 16.2 132 521-676 132-278 (278)
340 KOG0288 WD40 repeat protein Ti 63.7 1.9E+02 0.0041 33.9 14.9 14 615-628 54-67 (459)
341 PF05837 CENP-H: Centromere pr 63.5 60 0.0013 30.9 9.5 70 617-687 4-73 (106)
342 PF10046 BLOC1_2: Biogenesis o 63.3 1.2E+02 0.0026 28.5 11.4 32 651-682 66-97 (99)
343 PF10234 Cluap1: Clusterin-ass 63.2 2.2E+02 0.0047 31.9 15.0 13 304-316 3-15 (267)
344 TIGR01000 bacteriocin_acc bact 63.2 3.5E+02 0.0075 32.9 24.4 28 655-682 288-315 (457)
345 TIGR02338 gimC_beta prefoldin, 63.1 1.2E+02 0.0027 28.9 11.8 31 656-686 72-102 (110)
346 KOG1937 Uncharacterized conser 63.0 3.2E+02 0.007 32.5 27.4 28 518-545 290-317 (521)
347 PF10458 Val_tRNA-synt_C: Valy 63.0 21 0.00044 30.9 5.7 20 657-676 45-64 (66)
348 PF06785 UPF0242: Uncharacteri 62.8 2.8E+02 0.006 31.6 22.7 24 653-676 196-219 (401)
349 PF11180 DUF2968: Protein of u 62.7 1.9E+02 0.004 30.5 13.4 76 613-688 109-184 (192)
350 PF01486 K-box: K-box region; 62.6 89 0.0019 29.3 10.5 79 607-687 10-97 (100)
351 smart00338 BRLZ basic region l 62.6 79 0.0017 27.0 9.3 38 650-687 25-62 (65)
352 KOG1103 Predicted coiled-coil 62.5 2.8E+02 0.006 31.5 22.5 20 530-549 141-160 (561)
353 PRK13729 conjugal transfer pil 62.4 30 0.00066 41.3 8.8 51 633-683 72-122 (475)
354 PF15066 CAGE1: Cancer-associa 62.4 3.3E+02 0.0073 32.5 24.8 22 642-663 483-504 (527)
355 PF00170 bZIP_1: bZIP transcri 62.2 81 0.0018 26.9 9.3 36 652-687 27-62 (64)
356 PF06008 Laminin_I: Laminin Do 62.1 2.6E+02 0.0057 31.2 22.7 63 612-674 181-243 (264)
357 PRK02119 hypothetical protein; 62.1 53 0.0011 29.1 8.2 23 621-643 7-29 (73)
358 PF09731 Mitofilin: Mitochondr 62.1 4.1E+02 0.0089 33.4 22.4 6 769-774 464-469 (582)
359 PF12329 TMF_DNA_bd: TATA elem 61.5 1.2E+02 0.0025 27.0 10.2 28 658-685 40-67 (74)
360 PF07989 Microtub_assoc: Micro 60.9 73 0.0016 28.4 8.9 26 608-633 6-31 (75)
361 PF04102 SlyX: SlyX; InterPro 60.8 42 0.0009 29.3 7.3 32 655-686 15-46 (69)
362 KOG3433 Protein involved in me 60.3 92 0.002 32.3 10.4 68 609-676 74-141 (203)
363 PF10805 DUF2730: Protein of u 60.2 75 0.0016 30.3 9.6 30 654-683 68-97 (106)
364 COG1730 GIM5 Predicted prefold 60.2 1.9E+02 0.0042 29.2 12.8 23 662-684 112-134 (145)
365 PF12761 End3: Actin cytoskele 60.2 84 0.0018 33.2 10.5 33 654-686 163-195 (195)
366 TIGR03752 conj_TIGR03752 integ 60.2 73 0.0016 38.2 11.3 80 608-687 58-138 (472)
367 PF05769 DUF837: Protein of un 59.5 2.3E+02 0.0051 29.8 21.3 20 667-686 155-174 (181)
368 PF05529 Bap31: B-cell recepto 59.5 70 0.0015 33.9 10.4 24 664-687 160-183 (192)
369 KOG2751 Beclin-like protein [S 59.1 2E+02 0.0044 33.9 14.3 12 669-680 243-254 (447)
370 TIGR03495 phage_LysB phage lys 59.0 1.5E+02 0.0033 29.6 11.6 28 659-686 69-96 (135)
371 COG1842 PspA Phage shock prote 59.0 2.7E+02 0.0059 30.4 19.4 12 568-579 60-71 (225)
372 PF07851 TMPIT: TMPIT-like pro 58.8 1.2E+02 0.0026 34.9 12.4 24 975-998 270-293 (330)
373 PF09738 DUF2051: Double stran 58.6 2E+02 0.0042 32.9 14.0 64 612-675 108-171 (302)
374 PRK15178 Vi polysaccharide exp 58.6 3.6E+02 0.0078 32.5 16.7 18 611-628 288-305 (434)
375 KOG0993 Rab5 GTPase effector R 58.4 3.6E+02 0.0078 31.6 17.2 152 535-686 13-183 (542)
376 PF13094 CENP-Q: CENP-Q, a CEN 57.9 73 0.0016 32.7 9.9 39 609-647 20-58 (160)
377 KOG0240 Kinesin (SMY1 subfamil 57.8 3.4E+02 0.0074 33.3 16.2 145 532-687 338-485 (607)
378 KOG4427 E3 ubiquitin protein l 57.6 13 0.00028 45.9 4.7 18 399-416 31-48 (1096)
379 KOG4603 TBP-1 interacting prot 57.3 1E+02 0.0022 31.5 10.0 14 669-682 120-133 (201)
380 PRK03947 prefoldin subunit alp 57.1 1.5E+02 0.0033 29.6 11.8 28 657-684 107-134 (140)
381 PRK09841 cryptic autophosphory 57.1 5.5E+02 0.012 33.3 21.0 16 1052-1067 641-656 (726)
382 TIGR01005 eps_transp_fam exopo 56.6 5.7E+02 0.012 33.3 30.6 28 657-684 375-402 (754)
383 PRK02793 phi X174 lysis protei 56.2 69 0.0015 28.2 7.9 18 624-641 9-26 (72)
384 PF14992 TMCO5: TMCO5 family 56.0 93 0.002 34.8 10.6 14 612-625 66-79 (280)
385 PF04012 PspA_IM30: PspA/IM30 55.9 2.9E+02 0.0064 29.8 19.8 20 563-582 54-73 (221)
386 PF06428 Sec2p: GDP/GTP exchan 55.6 13 0.00028 35.0 3.5 71 609-686 8-79 (100)
387 PF10474 DUF2451: Protein of u 55.3 2.6E+02 0.0055 30.8 14.0 48 944-991 90-141 (234)
388 PF05278 PEARLI-4: Arabidopsis 55.2 1.1E+02 0.0024 34.1 10.9 21 660-680 237-257 (269)
389 PF03148 Tektin: Tektin family 55.0 4.3E+02 0.0093 31.4 26.6 167 506-682 129-369 (384)
390 KOG4302 Microtubule-associated 55.0 3.7E+02 0.008 34.0 16.6 27 660-686 228-254 (660)
391 PRK00736 hypothetical protein; 54.9 75 0.0016 27.7 7.8 7 675-681 36-42 (68)
392 KOG0165 Microtubule-associated 54.9 26 0.00057 43.5 6.6 135 378-513 531-668 (1023)
393 KOG4787 Uncharacterized conser 54.1 3.6E+02 0.0079 33.0 15.4 26 661-686 518-543 (852)
394 PF10212 TTKRSYEDQ: Predicted 53.9 2.7E+02 0.0059 33.9 14.7 15 142-156 106-120 (518)
395 PF12240 Angiomotin_C: Angiomo 53.8 3E+02 0.0066 29.3 15.3 132 521-659 3-165 (205)
396 KOG4005 Transcription factor X 53.5 2.1E+02 0.0045 30.9 12.1 35 507-541 69-103 (292)
397 PF05262 Borrelia_P83: Borreli 53.5 5E+02 0.011 31.8 19.4 7 286-292 25-31 (489)
398 PRK03947 prefoldin subunit alp 53.3 2E+02 0.0043 28.7 11.9 34 654-687 97-130 (140)
399 PRK00409 recombination and DNA 53.2 2.3E+02 0.0051 36.9 15.4 14 350-363 367-381 (782)
400 PF15450 DUF4631: Domain of un 52.9 5.1E+02 0.011 31.6 34.8 26 608-633 350-375 (531)
401 PF01166 TSC22: TSC-22/dip/bun 52.8 21 0.00045 29.7 3.7 30 659-688 15-44 (59)
402 PF04582 Reo_sigmaC: Reovirus 52.7 27 0.00059 39.8 6.0 77 611-687 79-155 (326)
403 COG0497 RecN ATPase involved i 51.9 5.6E+02 0.012 31.8 22.3 8 351-358 99-106 (557)
404 COG0419 SbcC ATPase involved i 51.9 7.3E+02 0.016 33.1 30.9 34 652-685 411-444 (908)
405 TIGR03017 EpsF chain length de 51.8 5E+02 0.011 31.2 26.4 8 352-359 41-48 (444)
406 KOG2077 JNK/SAPK-associated pr 51.7 1.1E+02 0.0025 36.9 10.9 51 638-688 330-380 (832)
407 TIGR01069 mutS2 MutS2 family p 51.7 2.8E+02 0.0061 36.2 15.7 17 190-206 213-230 (771)
408 PF10046 BLOC1_2: Biogenesis o 51.0 1.8E+02 0.004 27.3 10.4 23 653-675 75-97 (99)
409 PF12072 DUF3552: Domain of un 50.4 3.5E+02 0.0075 28.9 17.9 8 674-681 122-129 (201)
410 KOG0995 Centromere-associated 50.2 5.8E+02 0.013 31.5 33.9 25 439-463 265-289 (581)
411 PLN03188 kinesin-12 family pro 50.2 8.3E+02 0.018 33.3 22.0 11 69-79 331-341 (1320)
412 PF14988 DUF4515: Domain of un 50.2 3.6E+02 0.0077 29.1 23.9 30 657-686 169-198 (206)
413 TIGR02231 conserved hypothetic 50.2 1.5E+02 0.0032 36.8 12.7 31 609-639 71-101 (525)
414 PF07851 TMPIT: TMPIT-like pro 50.0 1.4E+02 0.0031 34.3 11.2 54 610-663 5-58 (330)
415 PF04880 NUDE_C: NUDE protein, 49.5 26 0.00057 36.1 4.8 21 661-681 27-47 (166)
416 PF00170 bZIP_1: bZIP transcri 48.9 1.7E+02 0.0037 24.9 9.3 37 646-682 28-64 (64)
417 PF05700 BCAS2: Breast carcino 48.8 3.9E+02 0.0084 29.1 17.2 77 608-687 135-211 (221)
418 PHA02414 hypothetical protein 48.6 1.6E+02 0.0035 27.2 8.9 48 634-681 33-80 (111)
419 PRK00846 hypothetical protein; 48.6 1.6E+02 0.0034 26.5 8.8 14 667-680 43-56 (77)
420 PRK00409 recombination and DNA 48.5 4.3E+02 0.0094 34.5 16.8 10 196-205 225-234 (782)
421 PF10224 DUF2205: Predicted co 48.4 86 0.0019 28.3 7.2 38 649-686 21-58 (80)
422 PRK05431 seryl-tRNA synthetase 48.2 88 0.0019 37.6 9.9 74 608-685 27-100 (425)
423 KOG3759 Uncharacterized RUN do 48.2 5.4E+02 0.012 30.7 15.2 17 906-922 434-450 (621)
424 PF03961 DUF342: Protein of un 48.0 94 0.002 37.7 10.2 32 653-684 377-408 (451)
425 KOG2391 Vacuolar sorting prote 47.7 1.1E+02 0.0025 34.8 9.6 24 248-271 124-147 (365)
426 PF14389 Lzipper-MIP1: Leucine 47.3 65 0.0014 29.6 6.6 29 659-687 55-83 (88)
427 KOG0962 DNA repair protein RAD 47.2 9.3E+02 0.02 33.0 29.0 23 523-545 232-254 (1294)
428 KOG4657 Uncharacterized conser 47.1 2.7E+02 0.0058 30.0 11.7 75 611-685 46-120 (246)
429 PF12795 MscS_porin: Mechanose 46.9 4.3E+02 0.0093 29.0 21.2 27 607-633 148-174 (240)
430 PLN02678 seryl-tRNA synthetase 46.7 99 0.0021 37.4 9.9 74 609-686 33-106 (448)
431 PF15188 CCDC-167: Coiled-coil 46.6 72 0.0016 29.1 6.5 48 610-657 6-56 (85)
432 PF13747 DUF4164: Domain of un 46.3 2.4E+02 0.0052 26.0 11.3 34 636-669 38-71 (89)
433 KOG4005 Transcription factor X 46.2 2.9E+02 0.0062 29.9 11.7 31 657-687 117-147 (292)
434 PF05335 DUF745: Protein of un 45.8 3.9E+02 0.0085 28.3 17.2 51 618-668 111-161 (188)
435 PF08172 CASP_C: CASP C termin 45.8 2.4E+02 0.0053 31.3 12.0 24 609-632 79-102 (248)
436 PF09403 FadA: Adhesion protei 45.7 3.1E+02 0.0067 27.1 15.2 11 569-579 29-39 (126)
437 PF07989 Microtub_assoc: Micro 45.4 2.2E+02 0.0048 25.3 9.6 25 615-639 6-30 (75)
438 KOG0962 DNA repair protein RAD 44.9 1E+03 0.022 32.7 29.5 24 947-971 1224-1247(1294)
439 KOG2010 Double stranded RNA bi 44.7 89 0.0019 35.1 8.1 65 613-677 137-201 (405)
440 PF06156 DUF972: Protein of un 44.5 1.1E+02 0.0023 29.4 7.7 27 660-686 24-50 (107)
441 TIGR00634 recN DNA repair prot 44.5 7.3E+02 0.016 31.0 20.2 24 654-677 349-372 (563)
442 PF07393 Sec10: Exocyst comple 44.2 5.1E+02 0.011 33.5 16.6 166 893-1074 530-698 (710)
443 PF06632 XRCC4: DNA double-str 44.1 3.2E+02 0.0069 31.9 13.1 21 613-633 148-168 (342)
444 PF13747 DUF4164: Domain of un 44.0 2.6E+02 0.0057 25.8 12.6 33 609-641 39-71 (89)
445 TIGR02231 conserved hypothetic 43.8 1.9E+02 0.0042 35.8 12.3 32 654-685 141-172 (525)
446 TIGR01069 mutS2 MutS2 family p 43.8 4.8E+02 0.01 34.1 16.1 6 9-14 16-21 (771)
447 KOG0377 Protein serine/threoni 43.7 19 0.0004 42.0 3.0 20 424-443 18-37 (631)
448 PF06428 Sec2p: GDP/GTP exchan 43.6 35 0.00076 32.1 4.3 7 643-649 21-27 (100)
449 PF08647 BRE1: BRE1 E3 ubiquit 43.5 2.8E+02 0.006 25.9 11.5 29 609-637 31-59 (96)
450 KOG0992 Uncharacterized conser 43.3 6.8E+02 0.015 30.3 21.0 12 998-1009 555-566 (613)
451 KOG3478 Prefoldin subunit 6, K 43.2 3E+02 0.0066 26.2 13.5 32 657-688 82-113 (120)
452 PRK11546 zraP zinc resistance 43.1 1.5E+02 0.0032 29.9 8.8 69 609-684 47-115 (143)
453 PF07798 DUF1640: Protein of u 42.4 4.2E+02 0.0091 27.6 20.1 30 557-586 70-99 (177)
454 KOG2264 Exostosin EXT1L [Signa 42.3 1.6E+02 0.0035 35.6 10.2 18 662-679 132-149 (907)
455 KOG1760 Molecular chaperone Pr 42.0 3.3E+02 0.0071 26.6 10.3 31 657-687 87-117 (131)
456 COG1730 GIM5 Predicted prefold 41.7 3.9E+02 0.0085 27.1 13.9 36 609-644 94-129 (145)
457 PRK13169 DNA replication intia 40.8 1.3E+02 0.0029 28.9 7.7 29 658-686 22-50 (110)
458 PRK11519 tyrosine kinase; Prov 40.7 9.3E+02 0.02 31.2 21.0 12 1055-1066 639-650 (719)
459 PF05529 Bap31: B-cell recepto 40.7 4.6E+02 0.01 27.6 14.7 14 475-488 89-102 (192)
460 PF05377 FlaC_arch: Flagella a 40.7 1.2E+02 0.0026 25.3 6.3 8 616-623 7-14 (55)
461 PF07111 HCR: Alpha helical co 40.3 8.8E+02 0.019 30.8 32.7 26 609-634 249-274 (739)
462 cd00890 Prefoldin Prefoldin is 40.2 3.5E+02 0.0077 26.1 12.3 28 658-685 94-121 (129)
463 cd00890 Prefoldin Prefoldin is 40.1 3.1E+02 0.0067 26.6 10.8 32 652-683 95-126 (129)
464 PF08763 Ca_chan_IQ: Voltage g 40.0 30 0.00066 25.8 2.5 17 425-441 11-27 (35)
465 PF06632 XRCC4: DNA double-str 40.0 3E+02 0.0064 32.1 12.0 7 660-666 196-202 (342)
466 PRK10361 DNA recombination pro 40.0 7.8E+02 0.017 30.0 29.5 16 625-640 142-157 (475)
467 PF12004 DUF3498: Domain of un 39.9 9.6 0.00021 46.0 0.0 27 519-545 374-400 (495)
468 PF02841 GBP_C: Guanylate-bind 39.9 6.1E+02 0.013 28.8 16.8 124 519-678 174-297 (297)
469 KOG3433 Protein involved in me 39.8 3E+02 0.0065 28.7 10.4 71 615-685 73-143 (203)
470 PF04899 MbeD_MobD: MbeD/MobD 39.4 2.7E+02 0.0058 24.5 10.3 65 620-684 3-68 (70)
471 PF08581 Tup_N: Tup N-terminal 39.3 2.9E+02 0.0063 24.9 11.6 73 608-683 3-75 (79)
472 PF14712 Snapin_Pallidin: Snap 39.3 3E+02 0.0066 25.1 11.0 77 610-686 15-92 (92)
473 TIGR00293 prefoldin, archaeal 39.3 3.7E+02 0.008 26.1 11.4 76 611-686 1-121 (126)
474 PF15035 Rootletin: Ciliary ro 39.1 4.9E+02 0.011 27.4 14.6 118 542-669 5-134 (182)
475 PRK13182 racA polar chromosome 39.0 3E+02 0.0064 28.9 10.7 81 621-703 83-163 (175)
476 PF02994 Transposase_22: L1 tr 38.7 83 0.0018 37.1 7.5 129 548-686 54-186 (370)
477 PF07058 Myosin_HC-like: Myosi 38.6 6.3E+02 0.014 28.6 15.8 131 531-661 3-160 (351)
478 COG4477 EzrA Negative regulato 38.4 8.4E+02 0.018 30.0 29.1 247 413-687 144-425 (570)
479 PF06103 DUF948: Bacterial pro 38.2 3.1E+02 0.0068 25.0 10.7 69 611-679 21-89 (90)
480 PRK10636 putative ABC transpor 37.8 1.9E+02 0.0041 36.9 11.1 78 608-685 548-632 (638)
481 PF07058 Myosin_HC-like: Myosi 37.8 3.1E+02 0.0067 30.9 10.9 75 611-685 2-86 (351)
482 PF13094 CENP-Q: CENP-Q, a CEN 36.7 2.6E+02 0.0056 28.6 10.0 64 625-688 22-85 (160)
483 PF11544 Spc42p: Spindle pole 36.5 3.1E+02 0.0068 24.5 9.5 61 626-686 1-61 (76)
484 PLN02320 seryl-tRNA synthetase 36.4 1.6E+02 0.0034 36.1 9.4 71 609-684 93-163 (502)
485 TIGR02894 DNA_bind_RsfA transc 36.4 2E+02 0.0044 29.4 8.6 53 608-660 103-155 (161)
486 PRK09841 cryptic autophosphory 36.3 1.1E+03 0.023 30.6 22.1 149 495-664 241-397 (726)
487 KOG4364 Chromatin assembly fac 36.3 9.8E+02 0.021 30.1 17.9 127 519-657 245-374 (811)
488 PF10458 Val_tRNA-synt_C: Valy 36.2 2.7E+02 0.0058 24.0 8.4 52 634-685 1-66 (66)
489 PF05377 FlaC_arch: Flagella a 36.1 1.3E+02 0.0028 25.1 5.8 40 638-677 1-40 (55)
490 KOG4001 Axonemal dynein light 36.0 3.8E+02 0.0083 28.3 10.6 72 610-687 179-250 (259)
491 KOG0942 E3 ubiquitin protein l 36.0 70 0.0015 40.9 6.4 50 471-520 6-55 (1001)
492 PF04871 Uso1_p115_C: Uso1 / p 35.5 4.7E+02 0.01 26.2 15.5 105 556-670 4-110 (136)
493 PF14073 Cep57_CLD: Centrosome 35.4 5.5E+02 0.012 26.9 20.7 173 513-685 3-175 (178)
494 KOG0165 Microtubule-associated 35.3 2.5E+02 0.0055 35.5 10.6 130 382-514 132-295 (1023)
495 COG5570 Uncharacterized small 35.3 67 0.0015 26.1 4.0 54 627-680 2-55 (57)
496 PRK10803 tol-pal system protei 35.3 1.3E+02 0.0028 33.7 8.0 53 635-687 38-90 (263)
497 KOG4196 bZIP transcription fac 35.3 4.5E+02 0.0097 25.9 10.5 67 503-580 49-115 (135)
498 PRK13169 DNA replication intia 35.2 2.1E+02 0.0046 27.5 8.2 55 626-680 4-58 (110)
499 PF04949 Transcrip_act: Transc 35.1 4.9E+02 0.011 26.3 18.1 125 523-675 33-158 (159)
500 KOG2391 Vacuolar sorting prote 35.0 2.2E+02 0.0047 32.6 9.4 71 615-685 217-287 (365)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.2e-138 Score=1268.69 Aligned_cols=1009 Identities=30% Similarity=0.433 Sum_probs=746.9
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
|||++.|.+||++|+|.++||.|.+|+|..||..+||||||+||++||+|||++||.+|+.++...+|||||||||||+|
T Consensus 362 gId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiF 441 (1463)
T COG5022 362 GIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIF 441 (1463)
T ss_pred CCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhh
Confidence 79999999999999999999999999999999999999999999999999999999999887777899999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CccchhhcchhhhcCCCCChHH
Q 001112 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFPRSTHET 159 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p~~td~~ 159 (1154)
+.|||||||||||||||||+||+|||++|||||.+|||+|++|+|.|||+||||||+ .|.|||++|||||++|.|||++
T Consensus 442 EkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s 521 (1463)
T COG5022 442 EKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDES 521 (1463)
T ss_pred ccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchH
Confidence 999999999999999999999999999999999999999999999999999999998 2459999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhccC
Q 001112 160 FAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSK 237 (1154)
Q Consensus 160 ~~~kl~~~~~--~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~ 237 (1154)
|.+||++.+. +++.|.+||++...|+|+||||+|+|+++||++||+|++++++++|+.+|+|+|++.||+.... ..+
T Consensus 522 ~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~-~~~ 600 (1463)
T COG5022 522 FTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEEN-IES 600 (1463)
T ss_pred HHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhh-ccc
Confidence 9999999986 5688999999999999999999999999999999999999999999999999999999995433 334
Q ss_pred CCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHH
Q 001112 238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1154)
Q Consensus 238 ~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ 317 (1154)
.++++|+|++|+.||..||++|++|+||||||||||..|+|+.||+.+|++|||||||+|+|||+|+|||+||+|+||+.
T Consensus 601 K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~ 680 (1463)
T COG5022 601 KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQ 680 (1463)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcccCC-----CchhHHHHHHHHhhcCCC--CcccccceeeeeccccchhhhhhhhccchhHHHHHHHhhhccc
Q 001112 318 RFGILASKVLDG-----SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLS 390 (1154)
Q Consensus 318 ry~~l~~~~~~~-----~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~~~ 390 (1154)
||++|.|..... ..|.+.+|..||..+.++ .||+|+||||||+|+++.||.+|...++.+++.||+.|||++.
T Consensus 681 RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~ 760 (1463)
T COG5022 681 RYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYL 760 (1463)
T ss_pred HHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999974321 246899999999998776 6999999999999999999999999999999999999999999
Q ss_pred chhhhchhhhHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHhhhhHHhHH-HHHHHHHHHHHHHHHH
Q 001112 391 RKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQ-TGMRGMAARNELRFRR 469 (1154)
Q Consensus 391 Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~iQ-s~~Rg~~aR~~~~~~~ 469 (1154)
|++|.+....+..+|...+|+..|++...--...+++.+|..||....|+.|...-..++.+| ..++....+.......
T Consensus 761 rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~ 840 (1463)
T COG5022 761 RRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF 840 (1463)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999887766667899999999999999999999999999999 7777777776666777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 470 QTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKR 549 (1154)
Q Consensus 470 ~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~ 549 (1154)
..++++.+|++||.+..+.+|..+.+.++.+|+.+|...|++.+..++.+.+++..+.....+|+.++.++...+.-...
T Consensus 841 ~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~ 920 (1463)
T COG5022 841 SLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLI 920 (1463)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhh
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999876653111
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchh---hHHHHHHHHHHHHHHHHHHH
Q 001112 550 MRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI---DHAVVEELTSENEKLKTLVS 626 (1154)
Q Consensus 550 ~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~---e~~~~~~L~~e~~kLe~~l~ 626 (1154)
.+..+. .+. +..++.-+.... +++.+.. ....+.+|.....+|++...
T Consensus 921 ~~~~~k---~e~-------~a~lk~~l~~~d-------------------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 971 (1463)
T COG5022 921 ENLEFK---TEL-------IARLKKLLNNID-------------------LEEGPSIEYVKLPELNKLHEVESKLKETSE 971 (1463)
T ss_pred hhhHHH---HHH-------HHHHHHHhhccc-------------------ccchhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 111000 011 111111111100 0000000 11133444444444444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHhhcccCcccccccccCC
Q 001112 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE---NQILRQQSLLSTPIKKMSEHISA 703 (1154)
Q Consensus 627 ~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e---~~~l~qq~~~~~~~~~~~~~~~~ 703 (1154)
+....+...+....+.....+++ ....+.+..+..+...+.+....+++. +..+....-..+ ......+.
T Consensus 972 ~~~~~~k~~~~~~~~~~~~~~el----~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~---s~~~~~~~ 1044 (1463)
T COG5022 972 EYEDLLKKSTILVREGNKANSEL----KNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIIS---SESTELSI 1044 (1463)
T ss_pred HHHHHHHHhhHHHHhcccHHHHH----HHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhc---cchhhhhc
Confidence 33332222222222222211111 111111111111112222222222222 222221100000 00000000
Q ss_pred --cccccCCC-CCccccccCCCCCCCCCCcccCCCcchHHHHhhhHHhhhhcHHHHHHHhh-hcCCCC-CCCCchHHH-H
Q 001112 704 --PATQSLEN-GHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVA-KNLGYC-NGKPVAAFT-I 777 (1154)
Q Consensus 704 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~~~~li~~l~-~~~~~~-~~~p~~A~i-l 777 (1154)
++. ...+ ..+...... +.. ....... +.. ..-....+..+....+++.+. .++.+. ...+.||.. .
T Consensus 1045 ~~~~~-~~~~~~~~~~~~l~-~~~---~~l~~~r-~~~--~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~ 1116 (1463)
T COG5022 1045 LKPLQ-KLKGLLLLENNQLQ-ARY---KALKLRR-ENS--LLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQ 1116 (1463)
T ss_pred cCccc-chhhhhhHHHHHhh-hhH---hhhhhcC-ccc--chhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHH
Confidence 000 0000 000000000 000 0000000 000 000011233455555555554 333222 122234544 4
Q ss_pred HHHHhhhcc-hhhhhHHHHHHHHHHHHHhhcc---cCCccchhhHHHhHHHHHHHHHHHhhhcCCCCCCCCCCCCCccch
Q 001112 778 YKCLLHWKS-FEAERTSVFDRLIQMIGSAIEN---EDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSL 853 (1154)
Q Consensus 778 ~~c~~~~~~-~~~e~~~ll~~ii~~i~~~i~~---~~d~~~l~fWLSN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~ 853 (1154)
+...-+|+. +..+...++...+..++.+... .+-...+.||.+|...+++.---. ...+.+ ..
T Consensus 1117 ~~~~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~------~~ 1183 (1463)
T COG5022 1117 FIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFA-------ALSEKR------LY 1183 (1463)
T ss_pred HHHHHhhccchHHhhhhHHHHHHhhccchhccccchhccccccccccccccCCCCCchh-------hcchhh------hh
Confidence 444457776 5556666777666666666442 234456789999999876310000 000000 00
Q ss_pred hhhhhcccCCCCCchhhhhHHhhHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----h---cCCC
Q 001112 854 FGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLC----I---QAPR 926 (1154)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~f~q~L~~~~~~iy~~l~~~~~~~l~~~L~~~----i---~~p~ 926 (1154)
...+-+ +.+. . + ... |. ..+..+..+..++|+.|.... .+.+.+... . ..++
T Consensus 1184 ~~~~~d-~~~~----~----s-~s~---v~------~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~ 1242 (1463)
T COG5022 1184 QSALYD-EKSK----L----S-SSE---VN------DLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKG 1242 (1463)
T ss_pred Hhhhhc-cccc----c----c-HHH---HH------HHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhcccccc
Confidence 000000 0000 0 0 111 11 334567777888888887654 233333211 1 1111
Q ss_pred CCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHHHhHhhhccCCCCCCchhHHH
Q 001112 927 TSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYV 1006 (1154)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qI 1006 (1154)
+.. +...+..+...+.++++.+++.+.++++.+.+.+.+..-.++++..++|+.+||.|.++..-..|+.|-++
T Consensus 1243 ~~~------~~~~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~ 1316 (1463)
T COG5022 1243 FNN------LNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEV 1316 (1463)
T ss_pred ccc------hhhcccCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccc
Confidence 110 11122244567889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHhhcccccccchHHHhHHHHHHHhHHhhcccccCCHHHHHhccCcCCCHHHHHHHHhccccCCCCCCCCC
Q 001112 1007 KAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVS 1086 (1154)
Q Consensus 1007 r~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ls~~Ql~kil~~Y~~d~~e~~~v~ 1086 (1154)
.+|.+.+.+||+.++ ...+..+|++++||++.+++.+++..+++++ .+.|.+|+|.|+.+|+.+|.+.++| .++|
T Consensus 1317 ~~n~~~~~~w~~~~~---i~~~~~~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ 1391 (1463)
T COG5022 1317 NYNSEELDDWCREFE---ISDVDEELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKE-NNLP 1391 (1463)
T ss_pred cccchhhhHHHHhhc---ccchHHHHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhccc-CCCh
Confidence 999999999999988 3556689999999999999998777777677 6999999999999999999999998 5999
Q ss_pred HHHHHHHHHhhhh
Q 001112 1087 PNVISSMRILMTE 1099 (1154)
Q Consensus 1087 ~~~i~~v~~~~~~ 1099 (1154)
.++.++|.+....
T Consensus 1392 ke~~~~~~a~~~~ 1404 (1463)
T COG5022 1392 KEILKKIEALLIK 1404 (1463)
T ss_pred HHHHHHHhhhhhH
Confidence 9999777665543
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=8.3e-107 Score=999.52 Aligned_cols=416 Identities=33% Similarity=0.540 Sum_probs=391.7
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
|||+++|.++||+|++.+++|.|+++++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 396 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f 475 (821)
T PTZ00014 396 FLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVF 475 (821)
T ss_pred CCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999887667789999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCChHHH
Q 001112 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1154)
+.|||||||||||||||||+|++|||+.||+||.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|
T Consensus 476 ~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f 555 (821)
T PTZ00014 476 KNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKF 555 (821)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCCC-CCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhccCCC
Q 001112 161 AQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1154)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~~-~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1154)
++||++++++|++|.+|+. +...|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.......+..
T Consensus 556 ~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~ 635 (821)
T PTZ00014 556 VSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLA 635 (821)
T ss_pred HHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhccccccccccc
Confidence 9999999999999999985 468999999999999999999999999999999999999999999999986543333334
Q ss_pred CCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHHHH
Q 001112 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1154)
Q Consensus 240 k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry 319 (1154)
+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||
T Consensus 636 k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY 715 (821)
T PTZ00014 636 KGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQF 715 (821)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCC-CchhHHHHHHHHhhcCC--CCcccccceeeeeccccchhhhhhhhccc---hhHHHHHHHhhhcccchh
Q 001112 320 GILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLG---RSASIIQRKVRSYLSRKN 393 (1154)
Q Consensus 320 ~~l~~~~~~~-~~~~~~~~~~il~~~~~--~~~qiG~TkVFlr~~~~~~Le~~r~~~l~---~~a~~IQ~~~R~~~~Rk~ 393 (1154)
++|.+..... ..|+++.|+.||..+++ ++|++|+||||||+|+++.||.+|.+++. .+++.||++||||++|++
T Consensus 716 ~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~ 795 (821)
T PTZ00014 716 KYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRK 795 (821)
T ss_pred HhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865433 35899999999999876 48999999999999999999998887764 578899999999999999
Q ss_pred hhchhhhHHHHHHHHHhhhhhhh
Q 001112 394 YIMLRRSAIHIQAACRGQLARTV 416 (1154)
Q Consensus 394 y~~~r~a~i~IQ~~~Rg~lar~~ 416 (1154)
|.+++.|++.||++||||++++.
T Consensus 796 ~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 796 VRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988764
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.7e-105 Score=961.82 Aligned_cols=457 Identities=61% Similarity=0.961 Sum_probs=440.6
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCcccccccccCCcc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQ-DPNSKSLIGVLDIYGFES 79 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~-~~~~~~~IgvLDi~GFE~ 79 (1154)
|||++.|..|||.|.+.+++++|+++++..+|...||++||.||++||+|+|++||.+|+. ++.+..+||||||||||+
T Consensus 301 g~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEs 380 (862)
T KOG0160|consen 301 GCDEEALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFES 380 (862)
T ss_pred CCCHHHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccc
Confidence 8999999999999999999999999999999999999999999999999999999999987 555689999999999999
Q ss_pred cCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCChHH
Q 001112 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1154)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1154)
|+.|||||||||||||||||+||+|||++||+||.+|||+|+.|+|.||++|+++|++ |.||++||||+|++|.++|++
T Consensus 381 F~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~ 459 (862)
T KOG0160|consen 381 FEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDET 459 (862)
T ss_pred cccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999 779999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhccCCC
Q 001112 160 FAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1154)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1154)
|..||++.+.+|+.|.+|+.+++.|+|.||||+|+|+++||++||+|+|++++++++..|+|+|+..+|++...++.+.+
T Consensus 460 ~a~KL~~~~~~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~ 539 (862)
T KOG0160|consen 460 LAQKLYQTLKRNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKS 539 (862)
T ss_pred HHHHHHHHhccCCccCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997666555566
Q ss_pred CCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHHHH
Q 001112 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1154)
Q Consensus 240 k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry 319 (1154)
+++||+++|+.+|..||++|++|+||||||||||+.+.|+.||+.+|++|||+|||||+|||+++|||.||+|.||+.||
T Consensus 540 ~~~tv~s~fk~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~ 619 (862)
T KOG0160|consen 540 KRSTVGSQFKLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRY 619 (862)
T ss_pred hcccHHHHHHHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCchhHHHHHHHHhhcCCCCcccccceeeeeccccchhhhhhhhccchhHHHHHHHhhhcccchhhhchhh
Q 001112 320 GILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRR 399 (1154)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~il~~~~~~~~qiG~TkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~~~Rk~y~~~r~ 399 (1154)
++|+| ... ..|++..|+.+|+..+++.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|+.|.++|.
T Consensus 620 ~~L~~-~~~-~~~~~~~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~ 697 (862)
T KOG0160|consen 620 GILMP-NDS-ASDDLSLCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRS 697 (862)
T ss_pred hhcCc-chh-cccchHHHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 333 3456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHH
Q 001112 400 SAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARN 463 (1154)
Q Consensus 400 a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~~aR~ 463 (1154)
+++.||+++||+++|+ ..+ +..||+.||+.||+|..|+.|..++.+++.+|+.+||+.+|.
T Consensus 698 ~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 698 AVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998 444 778999999999999999999999999999999999999987
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.1e-97 Score=954.67 Aligned_cols=656 Identities=35% Similarity=0.549 Sum_probs=524.0
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
||+...|.+++++..+.++++.+.+..+.+|+..+..++||++|+|||.|+|.+||.+|.......+|||||||+|||+|
T Consensus 382 g~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIf 461 (1930)
T KOG0161|consen 382 GINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIF 461 (1930)
T ss_pred CCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999877778899999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCccchhhcchhhhcCCCCChHH
Q 001112 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1154)
+.||||||||||+||||||+||+|+|.+||++|.+|||.|.+|+| .|-|||||||+++. ||+++|||||++|++||.+
T Consensus 462 e~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEkp~-Gi~slLdEEc~~PkAtd~t 540 (1930)
T KOG0161|consen 462 EFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEKPM-GILSLLDEECVVPKATDKT 540 (1930)
T ss_pred CcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhchh-hHHHHHHHHHhcCCCccch
Confidence 999999999999999999999999999999999999999999999 89999999999865 9999999999999999999
Q ss_pred HHHHHHHHh-cCCCCcCCCC--CCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchh---
Q 001112 160 FAQKLYQTF-KNHKRFSKPK--LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE--- 233 (1154)
Q Consensus 160 ~~~kl~~~~-~~~~~~~~p~--~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--- 233 (1154)
|++||...| |+|+.|.+|+ .....|.|.||||+|.|++.||++||+|++++.++.+|+.|++++|+.||.+...
T Consensus 541 f~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~ 620 (1930)
T KOG0161|consen 541 FLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAA 620 (1930)
T ss_pred HHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccch
Confidence 999999999 8999999997 4568999999999999999999999999999999999999999999999987321
Q ss_pred --------hccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcC
Q 001112 234 --------ESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAG 305 (1154)
Q Consensus 234 --------~~~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g 305 (1154)
..++++.|.||+..++.+|+.||.+|++|+|||||||.||+.|.|+.+|.+.|+.||||.||||.|||++.|
T Consensus 621 ~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~G 700 (1930)
T KOG0161|consen 621 AAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQG 700 (1930)
T ss_pred hhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhh
Confidence 123445678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccChHHHHHHHhhhhhcccC-CCchhHHHHHHHHhhcCCC--CcccccceeeeeccccchhhhhhhhccchhHHHHH
Q 001112 306 YPTRKPFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQ 382 (1154)
Q Consensus 306 yp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r~~~l~~~a~~IQ 382 (1154)
||.|++|.+|..||.++.|.... +..|.+.+|..|+..+..+ -|++|.||||||+|+++.||.+|...+....+.+|
T Consensus 701 fPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQ 780 (1930)
T KOG0161|consen 701 FPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQ 780 (1930)
T ss_pred CccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999966665443 3567799999999988554 69999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhch---hhhHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHH
Q 001112 383 RKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGM 459 (1154)
Q Consensus 383 ~~~R~~~~Rk~y~~~---r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~ 459 (1154)
+.+|||++|+.|.+. ..|+.+||+++|.|+. .|.|.|++.|.++++.+.....-....
T Consensus 781 A~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~-------------------lr~w~W~~Lf~kvkPLL~~~~~ee~~~ 841 (1930)
T KOG0161|consen 781 AAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLK-------------------LRTWPWWRLFTKVKPLLKVTKTEEEMR 841 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------hccCHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999877 5789999999999977 455667777777776444322222111
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 460 AARNELRFRRQTRASILIQSHCRKYLARLHYMKLK--KAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQV 537 (1154)
Q Consensus 460 ~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~--~a~i~iQ~~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv 537 (1154)
..-.++...+...... ..-|.-+.. ...++. ...+..| ..+++ ....++......+...+..+|..+
T Consensus 842 ~~~~e~~~l~~~l~~~---e~~~~ele~-~~~~~~~e~~~l~~~-----l~~e~--~~~~~aee~~~~~~~~k~~le~~l 910 (1930)
T KOG0161|consen 842 AKEEEIQKLKEELQKS---ESKRKELEE-KLVKLLEEKNDLQEQ-----LQAEK--ENLAEAEELLERLRAEKQELEKEL 910 (1930)
T ss_pred HhHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHH-----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111110000 000000000 011111 1111111 11222 223445666678888899999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------------
Q 001112 538 EELTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQE------------ 602 (1154)
Q Consensus 538 ~el~~~l~~e~~~~~~le~~~~---~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e------------ 602 (1154)
.+++.+++.+++....++..+. +++..+.+.+++++..+.++..++.....+++.+.+++..+++
T Consensus 911 ~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~l 990 (1930)
T KOG0161|consen 911 KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKEL 990 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887777766555 5667788888888888888877766555555555554432222
Q ss_pred ---------cchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------------------
Q 001112 603 ---------VPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ--------------------- 652 (1154)
Q Consensus 603 ---------~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~--------------------- 652 (1154)
....+++++..|.+.+.++++.+++++..++..++...++++...++...
T Consensus 991 Ee~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~ 1070 (1930)
T KOG0161|consen 991 EERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQ 1070 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 12226778888889999999999988888886555555555444443333
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 653 --------------ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 653 --------------l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+++.+..+.++++.+.+|+.++.+|+++++..+..
T Consensus 1071 l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~ 1119 (1930)
T KOG0161|consen 1071 LKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERAS 1119 (1930)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444566666666666666666666666553
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.5e-98 Score=916.31 Aligned_cols=374 Identities=83% Similarity=1.313 Sum_probs=361.1
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
|||+++|.++||+|++.+++|.+++++++++|..+||||||+||++||+|||.+||.+|+++..+..+||||||||||+|
T Consensus 301 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f 380 (674)
T cd01384 301 MCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESF 380 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCChHHH
Q 001112 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1154)
+.||||||||||||||||++|++|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|
T Consensus 381 ~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f 460 (674)
T cd01384 381 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETF 460 (674)
T ss_pred CcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhccCCCC
Q 001112 161 AQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSK 240 (1154)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~k 240 (1154)
++||++++++|++|.+|+.++..|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+..+.+.++
T Consensus 461 ~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k 540 (674)
T cd01384 461 AQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSK 540 (674)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccc
Confidence 99999999999999999988899999999999999999999999999999999999999999999999876554445567
Q ss_pred CcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHHHHh
Q 001112 241 FSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFG 320 (1154)
Q Consensus 241 ~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~ 320 (1154)
++||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+|++|.+|+.||+
T Consensus 541 ~~tv~~~fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~ 620 (674)
T cd01384 541 FSSIGSRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFG 620 (674)
T ss_pred cccHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCchhHHHHHHHHhhcCCCCcccccceeeeeccccchhhhhhhhcc
Q 001112 321 ILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVL 374 (1154)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~il~~~~~~~~qiG~TkVFlr~~~~~~Le~~r~~~l 374 (1154)
+|++.......+.++.|+.||..+++++|++|+||||||+|+++.||..|.+++
T Consensus 621 ~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 621 ILAPEVLKGSSDDKAACKKILDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HhCcccccCCCcHHHHHHHHHHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 999987666678899999999999999999999999999999999999998764
No 6
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=9.8e-97 Score=833.61 Aligned_cols=434 Identities=39% Similarity=0.665 Sum_probs=399.7
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----CCCCccccccccc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-----PNSKSLIGVLDIY 75 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-----~~~~~~IgvLDi~ 75 (1154)
++.+++|+++||+|++.++||.+.+++|+.||.++||||||+||+|||+|||.+||++|... ..+...|||||||
T Consensus 304 ~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiy 383 (1001)
T KOG0164|consen 304 SVTGDELERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIY 383 (1001)
T ss_pred cCCHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEee
Confidence 46889999999999999999999999999999999999999999999999999999999532 1235789999999
Q ss_pred CCcccCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCC-
Q 001112 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPR- 154 (1154)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~- 154 (1154)
|||+|+.|||||||||||||||||.|++-++|.|||||.+|||+|..|+|.+|.-++||+|.+..|||++|||||+.|+
T Consensus 384 gfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~ 463 (1001)
T KOG0164|consen 384 GFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGT 463 (1001)
T ss_pred eEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CChHHHHHHHHHHhcCCCCcCCCC-------CCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccc
Q 001112 155 STHETFAQKLYQTFKNHKRFSKPK-------LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSL 227 (1154)
Q Consensus 155 ~td~~~~~kl~~~~~~~~~~~~p~-------~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~l 227 (1154)
-||.+|+++|.+.+++|++|..-. ++...|.|.||||+|+|++.||++||+|.+..|+..+|..|++|.+++|
T Consensus 464 vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~ 543 (1001)
T KOG0164|consen 464 VTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSL 543 (1001)
T ss_pred cchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHh
Confidence 599999999999999999997422 2457999999999999999999999999999999999999999999999
Q ss_pred cccchhhcc-CCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCC
Q 001112 228 FLPLAEESS-KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGY 306 (1154)
Q Consensus 228 f~~~~~~~~-~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gy 306 (1154)
|+....+-. ...+++|+|++|+.|+..||+.|.+-+|+||||||||+.+.|+.||..+|.+|.+++|++|-+|++++||
T Consensus 544 fpeG~~~~~~~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgf 623 (1001)
T KOG0164|consen 544 FPEGNPDIAEVTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGF 623 (1001)
T ss_pred CCCCChhHHhhhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhccc
Confidence 996533222 2236789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChHHHHHHHhhhhhcccCC--CchhHHHHHHHHhhcCCC-Ccccccceeeeecc-ccchhhhhhhhccchhHHHHH
Q 001112 307 PTRKPFDEFVDRFGILASKVLDG--SSDEVTACKRLLEKVGLE-GYQIGKTKVFLRAG-QMADLDARRTEVLGRSASIIQ 382 (1154)
Q Consensus 307 p~r~~~~~F~~ry~~l~~~~~~~--~~~~~~~~~~il~~~~~~-~~qiG~TkVFlr~~-~~~~Le~~r~~~l~~~a~~IQ 382 (1154)
.+|.+|+.|+.||+++++..|+. ..++++.|+.+++..+.. ++.+|+||||+|.. .+..||..|.+++...++.||
T Consensus 624 ahRq~Y~~FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQ 703 (1001)
T KOG0164|consen 624 AHRQPYERFLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQ 703 (1001)
T ss_pred ccccchHHHHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987753 346799999999999875 89999999999975 468899999999999999999
Q ss_pred HHhhhcccchhhhchhhhHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHH
Q 001112 383 RKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKD 444 (1154)
Q Consensus 383 ~~~R~~~~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~ 444 (1154)
+.||||++|.+|++|+.+++.|+ +||.+..+ .++..||+.+|++..++.|.+
T Consensus 704 K~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 704 KAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCC
Confidence 99999999999999999999999 88855432 456789999999999999875
No 7
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.7e-95 Score=891.99 Aligned_cols=369 Identities=51% Similarity=0.830 Sum_probs=348.6
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCcccccccccCC
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD---PNSKSLIGVLDIYGF 77 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~---~~~~~~IgvLDi~GF 77 (1154)
|||+++|.++||+|++.+++|.+++++++++|..+||+|||+||++||+|||.+||.+|++. .....+|||||||||
T Consensus 299 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GF 378 (691)
T cd01380 299 GVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGF 378 (691)
T ss_pred CCCHHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcc
Confidence 79999999999999999999999999999999999999999999999999999999999876 456789999999999
Q ss_pred cccCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCCh
Q 001112 78 ESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTH 157 (1154)
Q Consensus 78 E~f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td 157 (1154)
|+|+.||||||||||||||||++|++|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||
T Consensus 379 E~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td 457 (691)
T cd01380 379 ETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSD 457 (691)
T ss_pred cccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCCh
Confidence 9999999999999999999999999999999999999999999999999999999999985 699999999999999999
Q ss_pred HHHHHHHHHHhc--CCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhc
Q 001112 158 ETFAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES 235 (1154)
Q Consensus 158 ~~~~~kl~~~~~--~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~ 235 (1154)
++|++||++.++ +|+.|.+|+.+...|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+.....+
T Consensus 458 ~~f~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~ 537 (691)
T cd01380 458 ESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELAS 537 (691)
T ss_pred HHHHHHHHHHhcccCCCCccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccc
Confidence 999999999998 899999999888999999999999999999999999999999999999999999999997542111
Q ss_pred -----------------cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhh
Q 001112 236 -----------------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEA 298 (1154)
Q Consensus 236 -----------------~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~ 298 (1154)
....+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~ 617 (691)
T cd01380 538 SSSSSAKSKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLET 617 (691)
T ss_pred cccccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHH
Confidence 011356899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccChHHHHHHHhhhhhcccCCCchhHHHHHHHHhhcCC--CCcccccceeeeeccccchhhhhh
Q 001112 299 IRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1154)
Q Consensus 299 iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~qiG~TkVFlr~~~~~~Le~~r 370 (1154)
|||+++|||+|++|.+|+.||++|+|.......|.++.|+.||..+.. ++|++|+||||||+|+++.||+.|
T Consensus 618 iri~r~Gyp~R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 618 IRISAAGFPSRWTYEEFAQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHhccCCccccHHHHHHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999999999999999999999998664456889999999999865 589999999999999999999876
No 8
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=4e-95 Score=887.41 Aligned_cols=370 Identities=44% Similarity=0.712 Sum_probs=348.3
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCcccccccccCCcc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIYGFES 79 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgvLDi~GFE~ 79 (1154)
|||+++|.++||+|++.++||.+++++++++|..+||||||+||++||+|||.+||.+|+++ .....+||||||||||+
T Consensus 295 gv~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~ 374 (671)
T cd01381 295 GVPIQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFEN 374 (671)
T ss_pred CCCHHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCccc
Confidence 79999999999999999999999999999999999999999999999999999999999765 45678999999999999
Q ss_pred cCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCChHH
Q 001112 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1154)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1154)
|+.||||||||||||||||++|++|||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++
T Consensus 375 f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~ 454 (671)
T cd01381 375 FDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQT 454 (671)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCC-CCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhc-cC
Q 001112 160 FAQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES-SK 237 (1154)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~-~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~ 237 (1154)
|++||++++++|+.|.+|+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.||+.....+ ..
T Consensus 455 f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~ 534 (671)
T cd01381 455 MLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAET 534 (671)
T ss_pred HHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccc
Confidence 99999999999999998874 45799999999999999999999999999999999999999999999998754221 12
Q ss_pred CCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHH
Q 001112 238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1154)
Q Consensus 238 ~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ 317 (1154)
..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+|++|.+|+.
T Consensus 535 ~~k~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ 614 (671)
T cd01381 535 RKKKPTLSSQFRRSLDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVE 614 (671)
T ss_pred cccCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHH
Confidence 33678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcccCC--CchhHHHHHHHHhhcCC--CCcccccceeeeeccccchhhhhh
Q 001112 318 RFGILASKVLDG--SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1154)
Q Consensus 318 ry~~l~~~~~~~--~~~~~~~~~~il~~~~~--~~~qiG~TkVFlr~~~~~~Le~~r 370 (1154)
||++|+|..... ..|.++.|+.|++.+.+ ++|++|+||||||+++++.||..|
T Consensus 615 rY~~L~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 615 RYRVLVPGVKPAYKQDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHhCcccccccccccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 999999875432 34778999999998765 589999999999999999999876
No 9
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=4.8e-95 Score=891.17 Aligned_cols=370 Identities=44% Similarity=0.754 Sum_probs=347.8
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
|||+++|.++||+|++.+++|.+++++++++|..+||+|||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 308 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f 387 (693)
T cd01377 308 GVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIF 387 (693)
T ss_pred CCCHHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987778899999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCccchhhcchhhhcCCCCChHH
Q 001112 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1154)
+.||||||||||||||||++|++|||+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|||||++|+|||++
T Consensus 388 ~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~ 467 (693)
T cd01377 388 DFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKT 467 (693)
T ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCc--CCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhc--
Q 001112 160 FAQKLYQTFKNHKRF--SKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES-- 235 (1154)
Q Consensus 160 ~~~kl~~~~~~~~~~--~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-- 235 (1154)
|++||++.+++|+.| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.....+
T Consensus 468 ~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~ 547 (693)
T cd01377 468 FVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGD 547 (693)
T ss_pred HHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccc
Confidence 999999999999887 4455667899999999999999999999999999999999999999999999998643211
Q ss_pred --------cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCC
Q 001112 236 --------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYP 307 (1154)
Q Consensus 236 --------~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp 307 (1154)
.+.++++||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||
T Consensus 548 ~~~~~~~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp 627 (693)
T cd01377 548 GGGGGGKKKKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFP 627 (693)
T ss_pred cccccCCCCcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCC
Confidence 112245899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHhhhhhccc-CCCchhHHHHHHHHhhcCCC--Ccccccceeeeeccccchhhhhh
Q 001112 308 TRKPFDEFVDRFGILASKVL-DGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1154)
Q Consensus 308 ~r~~~~~F~~ry~~l~~~~~-~~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r 370 (1154)
+|++|.+|+.||++|+|... ....|.++.|+.||+.++++ +|++|+||||||++++..||.+|
T Consensus 628 ~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 628 NRILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred ccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 99999999999999998764 23468899999999998764 89999999999999999999876
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=6.3e-95 Score=887.72 Aligned_cols=369 Identities=42% Similarity=0.713 Sum_probs=348.9
Q ss_pred CCCHHHHHHHHhhceEeeCC----ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCccccccccc
Q 001112 1 MCDAKALEDSLCKREIVTRD----ETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIY 75 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~----e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgvLDi~ 75 (1154)
|||+++|.++||+|++.+++ |.+++++++++|..+||+|||+||++||+|||.+||.+|.++ .....+|||||||
T Consensus 295 gv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIf 374 (674)
T cd01378 295 GVDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIY 374 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecc
Confidence 79999999999999999998 999999999999999999999999999999999999999876 5567899999999
Q ss_pred CCcccCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CccchhhcchhhhcCC-
Q 001112 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFP- 153 (1154)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p- 153 (1154)
|||+|+.||||||||||||||||++|++|+|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||++|
T Consensus 375 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~ 454 (674)
T cd01378 375 GFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPH 454 (674)
T ss_pred cccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchh
Q 001112 154 RSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE 233 (1154)
Q Consensus 154 ~~td~~~~~kl~~~~~~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~ 233 (1154)
++||++|++||++++++|+++.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+....
T Consensus 455 ~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~ 534 (674)
T cd01378 455 EGTDQTFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSD 534 (674)
T ss_pred CCChHHHHHHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhccccc
Confidence 99999999999999999999988888889999999999999999999999999999999999999999999999986433
Q ss_pred hccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChH
Q 001112 234 ESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFD 313 (1154)
Q Consensus 234 ~~~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~ 313 (1154)
.. ...+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.
T Consensus 535 ~~-~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~ 613 (674)
T cd01378 535 AD-SKKRPTTAGFKIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFD 613 (674)
T ss_pred cc-ccCCCCcHHHHHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHH
Confidence 22 22366899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcccC-CCchhHHHHHHHHhhcCCC--Ccccccceeeeecc-ccchhhhhh
Q 001112 314 EFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAG-QMADLDARR 370 (1154)
Q Consensus 314 ~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~-~~~~Le~~r 370 (1154)
+|+.||++|+|.... ...|+++.|+.||..++++ +|++|+||||||+| +++.||..|
T Consensus 614 ~F~~rY~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 614 KFLQRYKLLSPKTWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 999999999987532 3468899999999998764 89999999999998 689999876
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.6e-94 Score=882.86 Aligned_cols=369 Identities=39% Similarity=0.672 Sum_probs=343.3
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
|||+++|.++||+|++.+++|.+.+++++++|..+||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|
T Consensus 296 gv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f 374 (677)
T cd01387 296 QISPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDL 374 (677)
T ss_pred CCCHHHHHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccC
Confidence 79999999999999999999999999999999999999999999999999999999999864 45679999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCChHHH
Q 001112 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1154)
+.||||||||||||||||++||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||++|++||++|
T Consensus 375 ~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~ 454 (677)
T cd01387 375 SFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTF 454 (677)
T ss_pred CCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhh------
Q 001112 161 AQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE------ 234 (1154)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~------ 234 (1154)
++|++..+++|+.|.+|+.+.+.|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+.....
T Consensus 455 ~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~ 534 (677)
T cd01387 455 LQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRL 534 (677)
T ss_pred HHHHHHhccCCccccCCCCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccc
Confidence 99999999999999999988889999999999999999999999999999999999999999999999753211
Q ss_pred ---c--cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCc
Q 001112 235 ---S--SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTR 309 (1154)
Q Consensus 235 ---~--~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r 309 (1154)
+ .+..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+|
T Consensus 535 ~~~s~~~~~~~~~tv~~~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r 614 (677)
T cd01387 535 GKSSSGTRLYKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVR 614 (677)
T ss_pred cCCCccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCcc
Confidence 0 01124579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHhhhhhcccCCCchhHHHHHHHHhhcCC--CCcccccceeeeeccccchhhhhh
Q 001112 310 KPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1154)
Q Consensus 310 ~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~qiG~TkVFlr~~~~~~Le~~r 370 (1154)
++|.+|+.||++|+|.......+.+..+..++..+++ ++|++|+||||||++++..||..|
T Consensus 615 ~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 615 LPFQHFIDRYRCLVALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 9999999999999987544333334555788887765 479999999999999999999876
No 12
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.9e-94 Score=880.62 Aligned_cols=366 Identities=46% Similarity=0.794 Sum_probs=341.4
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCcccccccccCCcc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIYGFES 79 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgvLDi~GFE~ 79 (1154)
|||+++|.++||+|++.++||.+++++++++|..+||||||+||++||+|||.+||.+|++.. ....+||||||||||+
T Consensus 298 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~ 377 (677)
T cd01383 298 GCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFES 377 (677)
T ss_pred CCCHHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeecccccc
Confidence 799999999999999999999999999999999999999999999999999999999998754 3467999999999999
Q ss_pred cCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCChHH
Q 001112 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1154)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1154)
|+.||||||||||||||||++|++|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++
T Consensus 378 f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~ 457 (677)
T cd01383 378 FDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLT 457 (677)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccch-h-----
Q 001112 160 FAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLA-E----- 233 (1154)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~-~----- 233 (1154)
|++||++++++|+.|.+|+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|.... .
T Consensus 458 f~~kl~~~~~~~~~~~~~~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~ 534 (677)
T cd01383 458 FANKLKQHLKTNSCFRGER--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVV 534 (677)
T ss_pred HHHHHHHHhCCCCCCCCCC--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhcccccc
Confidence 9999999999999998875 468999999999999999999999999999999999999999876 554320 0
Q ss_pred h-----ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCC
Q 001112 234 E-----SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPT 308 (1154)
Q Consensus 234 ~-----~~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~ 308 (1154)
. .....+..||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+
T Consensus 535 ~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~ 614 (677)
T cd01383 535 GPLYVASAADSQKLSVGTKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPT 614 (677)
T ss_pred ccccccccccccCcchHHHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCc
Confidence 0 11123568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhhhhcccCCCchhHHHHHHHHhhcCCC--Ccccccceeeeeccccchhhhhh
Q 001112 309 RKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1154)
Q Consensus 309 r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r 370 (1154)
|++|.+|+.||++|++.... ..|++..|+.||+.++++ +|++|+||||||+|+++.||..|
T Consensus 615 R~~~~~F~~rY~~L~~~~~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 615 RMTHQEFARRYGFLLLENIA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred cccHHHHHHHHHHhCccccC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 99999999999999997654 357889999999988764 89999999999999999999876
No 13
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.3e-93 Score=876.72 Aligned_cols=367 Identities=40% Similarity=0.650 Sum_probs=344.4
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCcccccccccCC
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP---NSKSLIGVLDIYGF 77 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~---~~~~~IgvLDi~GF 77 (1154)
|||+++|.++||+|++.++||.+++|+++++|..+||+|||+||++||+|||++||.+|++.. ....+|||||||||
T Consensus 307 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GF 386 (692)
T cd01385 307 KVKRETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGF 386 (692)
T ss_pred CCCHHHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCcc
Confidence 799999999999999999999999999999999999999999999999999999999998643 34689999999999
Q ss_pred cccCC-CchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCC
Q 001112 78 ESFKT-NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRST 156 (1154)
Q Consensus 78 E~f~~-NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~t 156 (1154)
|+|+. ||||||||||||||||++|++|||+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|+||
T Consensus 387 E~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~t 466 (692)
T cd01385 387 EDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHAT 466 (692)
T ss_pred ccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCC
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhcc
Q 001112 157 HETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESS 236 (1154)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~ 236 (1154)
|++|++|+++.+++|+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+....
T Consensus 467 d~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~ 546 (692)
T cd01385 467 SQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVF 546 (692)
T ss_pred HHHHHHHHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccc
Confidence 99999999999999999999988788999999999999999999999999999999999999999999999976432211
Q ss_pred ---------CCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCC
Q 001112 237 ---------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYP 307 (1154)
Q Consensus 237 ---------~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp 307 (1154)
++.+.+||+++|+.+|+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||
T Consensus 547 ~~~~~~~~~~~~~~~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp 626 (692)
T cd01385 547 RWAVLRAAFRAMAAPSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYS 626 (692)
T ss_pred ccccccccccCccCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCC
Confidence 11234799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHhhhhhcccCCCchhHHHHHHHHhhcCCC--Ccccccceeeeeccccchhhhhh
Q 001112 308 TRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1154)
Q Consensus 308 ~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r 370 (1154)
+|++|.+|+.||++|+|.... ..++.|+.||+.++++ +|++|+||||||+++++.||..-
T Consensus 627 ~R~~~~~F~~rY~~L~~~~~~---~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~ 688 (692)
T cd01385 627 VRYTYQDFTQQYRILLPKGAQ---SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETL 688 (692)
T ss_pred ccccHHHHHHHHHHhCccccc---chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHH
Confidence 999999999999999987432 3467799999998775 89999999999999999998753
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.2e-93 Score=880.11 Aligned_cols=367 Identities=40% Similarity=0.656 Sum_probs=343.1
Q ss_pred CCCHHHHHHHHhhceEe-----eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001112 1 MCDAKALEDSLCKREIV-----TRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~ 75 (1154)
|||+++|.++||+|++. ++|+.++++++++||..+||+|||+||++||+|||.+||.+|..+ .+..+|||||||
T Consensus 327 gv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~-~~~~~IgiLDIf 405 (717)
T cd01382 327 GLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE-TSSNFIGVLDIA 405 (717)
T ss_pred CCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcEEEEEecc
Confidence 79999999999999998 789999999999999999999999999999999999999999765 356789999999
Q ss_pred CCcccCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCC
Q 001112 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1154)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~ 155 (1154)
|||+|+.||||||||||||||||++|++|||+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|++
T Consensus 406 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~ 485 (717)
T cd01382 406 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQP 485 (717)
T ss_pred ccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccc
Q 001112 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1154)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1154)
||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++||+
T Consensus 486 tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~n~~i~ 565 (717)
T cd01382 486 SDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESKDKFLR 565 (717)
T ss_pred CHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCchHHHH
Confidence 9999999999999999988877542 357999999999999999999999999999999999999999999
Q ss_pred cccccchhhc---c--CCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHH
Q 001112 226 SLFLPLAEES---S--KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIR 300 (1154)
Q Consensus 226 ~lf~~~~~~~---~--~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~ir 300 (1154)
.||+...... . +..++.||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||||+||
T Consensus 566 ~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vr 645 (717)
T cd01382 566 SLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLD 645 (717)
T ss_pred HHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHH
Confidence 9998643211 1 1125679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccChHHHHHHHhhhhhcccCCCchhHHHHHHHHhhcCCC--Ccccccceeeeeccccchhhhh
Q 001112 301 ISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDAR 369 (1154)
Q Consensus 301 i~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~ 369 (1154)
|+++|||+|++|.+|+.||+.|+|.... ..|++..|+.||+.++++ +|++|+||||||+|+++.||++
T Consensus 646 i~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 646 LMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred HHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 9999999999999999999999986553 358899999999998764 8999999999999999999975
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=4.8e-93 Score=865.21 Aligned_cols=347 Identities=40% Similarity=0.707 Sum_probs=331.9
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-----CCccccccccc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN-----SKSLIGVLDIY 75 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-----~~~~IgvLDi~ 75 (1154)
|||+++|.++||+|++.++||++++++++++|..+||||||+||++||+|||.+||.+|.++.. ...+|||||||
T Consensus 302 gv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~ 381 (653)
T cd01379 302 CIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIF 381 (653)
T ss_pred CCCHHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEecc
Confidence 7999999999999999999999999999999999999999999999999999999999986532 35799999999
Q ss_pred CCcccCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCC
Q 001112 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1154)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~ 155 (1154)
|||+|+.||||||||||||||||++|++|||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|
T Consensus 382 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~ 461 (653)
T cd01379 382 GFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQA 461 (653)
T ss_pred ccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhc
Q 001112 156 THETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES 235 (1154)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~ 235 (1154)
||++|++|++.+++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|
T Consensus 462 td~~~~~kl~~~~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S---------------- 524 (653)
T cd01379 462 TDQTLVEKFEDNLK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS---------------- 524 (653)
T ss_pred CHHHHHHHHHHhcC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------
Confidence 99999999999885 5678899888889999999999999999999999999999999999987
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHH
Q 001112 236 SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEF 315 (1154)
Q Consensus 236 ~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F 315 (1154)
+||+++|+.||++||++|++|+||||||||||+.+.|+.||+..|++||||+||+|+|||+++|||+|++|.+|
T Consensus 525 ------~tv~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F 598 (653)
T cd01379 525 ------QTVASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANF 598 (653)
T ss_pred ------cHHHHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccCCCchhHHHHHHHHhhcCCCCcccccceeeeeccccchhhhhh
Q 001112 316 VDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARR 370 (1154)
Q Consensus 316 ~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~~~qiG~TkVFlr~~~~~~Le~~r 370 (1154)
+.||++|++.......+.++.|+.||..++.++|++|+||||||+++++.||++|
T Consensus 599 ~~rY~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 599 IRRYCFLAYRFEEEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred HHHHHHhccccccccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 9999999986544445789999999999999999999999999999999999875
No 16
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=3e-92 Score=868.81 Aligned_cols=371 Identities=53% Similarity=0.889 Sum_probs=352.1
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
||++++|.++||++++.++||.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 303 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f 382 (677)
T smart00242 303 GVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIF 382 (677)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987678899999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCChHHH
Q 001112 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1154)
+.||||||||||||||||++|++|+|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 383 ~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~ 462 (677)
T smart00242 383 EVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTF 462 (677)
T ss_pred ccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCC-CCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhccCCC
Q 001112 161 AQKLYQTFKNHKRFSKPK-LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1154)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~-~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1154)
++||++.+++|+.|.+|+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.......+..
T Consensus 463 ~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~ 542 (677)
T smart00242 463 LEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKK 542 (677)
T ss_pred HHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccC
Confidence 999999999999999994 5668999999999999999999999999999999999999999999999987644333344
Q ss_pred CCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHHHH
Q 001112 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1154)
Q Consensus 240 k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry 319 (1154)
+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|+.||||+||+|+|||++.|||+|++|.+|+.||
T Consensus 543 ~~~tv~~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry 622 (677)
T smart00242 543 RFRTVGSQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRY 622 (677)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCC-CchhHHHHHHHHhhcCC--CCcccccceeeeeccccchhhhhhh
Q 001112 320 GILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRT 371 (1154)
Q Consensus 320 ~~l~~~~~~~-~~~~~~~~~~il~~~~~--~~~qiG~TkVFlr~~~~~~Le~~r~ 371 (1154)
++|++..... ..|+++.|+.||..+++ ++|++|+||||||++++..||++|.
T Consensus 623 ~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 623 RVLLPDTWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 9999875432 34689999999999865 5899999999999999999999874
No 17
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=2e-90 Score=855.70 Aligned_cols=370 Identities=49% Similarity=0.819 Sum_probs=344.8
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
|||+++|.++||++++.++||.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 296 gv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 375 (679)
T cd00124 296 GLDPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIF 375 (679)
T ss_pred CCCHHHHHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999887677899999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCChHHH
Q 001112 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1154)
+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 376 ~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~ 455 (679)
T cd00124 376 EKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETF 455 (679)
T ss_pred CCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCC-CCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhc----
Q 001112 161 AQKLYQTFKNHKRFSK-PKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES---- 235 (1154)
Q Consensus 161 ~~kl~~~~~~~~~~~~-p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~---- 235 (1154)
++||++.+++|+.|.. ++.....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.....+
T Consensus 456 ~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~ 535 (679)
T cd00124 456 LEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSS 535 (679)
T ss_pred HHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccc
Confidence 9999999999988654 44566899999999999999999999999999999999999999999999998642111
Q ss_pred -------cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCC
Q 001112 236 -------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPT 308 (1154)
Q Consensus 236 -------~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~ 308 (1154)
.+..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+
T Consensus 536 ~~~~~~~~~~~~~~tv~~~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~ 615 (679)
T cd00124 536 TGSTSSKGKKKKGQTVGSQFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSV 615 (679)
T ss_pred cccccccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCc
Confidence 1223668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhhhhcccCCCchhHHHHHHHHhhcCCC--Ccccccceeeeeccccchhhhhh
Q 001112 309 RKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1154)
Q Consensus 309 r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r 370 (1154)
|++|.+|+.||++|++.........+..|+.++..++++ +|++|+||||||++++..||..|
T Consensus 616 R~~~~eF~~rY~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 616 RIPFDEFLSRYRFLAPDLLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred eeeHHHHHHHHHHhCcccccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 999999999999999876544333344499999988764 89999999999999999999865
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.2e-91 Score=787.24 Aligned_cols=399 Identities=38% Similarity=0.663 Sum_probs=369.3
Q ss_pred CCCHHHHHHHHhhceEeeC----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCccccccccc
Q 001112 1 MCDAKALEDSLCKREIVTR----DETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIY 75 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~----~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgvLDi~ 75 (1154)
|||+..|++.||.|.+.++ .+++.+||+++||.+.||||||+||++||||||++||.+|... .....+|||||||
T Consensus 312 gi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIY 391 (1106)
T KOG0162|consen 312 GIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIY 391 (1106)
T ss_pred cCCHHHHHHHHHHHHHhhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEee
Confidence 7899999999999999863 6899999999999999999999999999999999999999743 3356889999999
Q ss_pred CCcccCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcC-ccchhhcchhhhcCC-
Q 001112 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKK-PGGIIALLDEACMFP- 153 (1154)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~-~~Gil~lLdee~~~p- 153 (1154)
|||+|+.||||||||||.||||||.|++-++|.|||||.+|||.|++|+|.||.-++||||.| |.||+++||+.|...
T Consensus 392 GFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~H 471 (1106)
T KOG0162|consen 392 GFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAH 471 (1106)
T ss_pred eeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999974 679999999999854
Q ss_pred ---CCChHHHHHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCccccccccc
Q 001112 154 ---RSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLP 230 (1154)
Q Consensus 154 ---~~td~~~~~kl~~~~~~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~ 230 (1154)
.|.|.+|+++|...+++||+|.. ....|+|+||||+|+||++||.+||+|.+..|+++|++.|+++|++.||+.
T Consensus 472 a~~~~aDqa~~qrLn~~~~s~phF~~---~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe 548 (1106)
T KOG0162|consen 472 ADSEGADQALLQRLNKLFGSHPHFES---RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPE 548 (1106)
T ss_pred cccchhHHHHHHHHHHHhcCCCcccc---ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCch
Confidence 46799999999999999999984 347899999999999999999999999999999999999999999999997
Q ss_pred chhhccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCcc
Q 001112 231 LAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRK 310 (1154)
Q Consensus 231 ~~~~~~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~ 310 (1154)
..+. .+..+++|.|+..+.|-+.|++||..|.||||||||||+.|.|+.||..+|.+|+.|+|+-|-|||+++||.+|.
T Consensus 549 ~v~~-dskrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr 627 (1106)
T KOG0162|consen 549 NVDA-DSKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRR 627 (1106)
T ss_pred hhcc-cccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHH
Confidence 6443 344578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhhcccC-CCchhHHHHHHHHhhcCC--CCcccccceeeeec-cccchhhhhhhhccchhHHHHHHHhh
Q 001112 311 PFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRA-GQMADLDARRTEVLGRSASIIQRKVR 386 (1154)
Q Consensus 311 ~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~--~~~qiG~TkVFlr~-~~~~~Le~~r~~~l~~~a~~IQ~~~R 386 (1154)
.|+-|++||.+|.|..+. ...|++++|+.||....+ ++||+|.||||++. ..+..||.+|+.+....|..||+.||
T Consensus 628 ~F~kF~qRyailsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWR 707 (1106)
T KOG0162|consen 628 AFDKFAQRYAILSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWR 707 (1106)
T ss_pred HHHHHHHHheecCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999998754 346899999999998766 48999999999987 45688999999999999999999999
Q ss_pred hcccchhhhchhhhHHH
Q 001112 387 SYLSRKNYIMLRRSAIH 403 (1154)
Q Consensus 387 ~~~~Rk~y~~~r~a~i~ 403 (1154)
.|++|++|.++|.-+..
T Consensus 708 rfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 708 RFVARRKYEKMREEATK 724 (1106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988865543
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=3.2e-89 Score=841.64 Aligned_cols=370 Identities=29% Similarity=0.452 Sum_probs=329.9
Q ss_pred CCCHHHHHHHHhhceEeeCCc-------------eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 001112 1 MCDAKALEDSLCKREIVTRDE-------------TITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKS 67 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e-------------~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~ 67 (1154)
||++++|.++|+++++.++++ .++.++++.+|..+||||||+||++||+|||.+||.+|.++..+..
T Consensus 294 gv~~~~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~ 373 (767)
T cd01386 294 GCPLEELSSATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIA 373 (767)
T ss_pred CCCHHHHHHHhcccEEeecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 799999999999998776543 3445788999999999999999999999999999999988766678
Q ss_pred ccccccccCCcccCC------CchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCc-
Q 001112 68 LIGVLDIYGFESFKT------NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKP- 139 (1154)
Q Consensus 68 ~IgvLDi~GFE~f~~------NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~-~dn~~~ldlie~~~- 139 (1154)
+||||||||||+|+. |||||||||||||||||+|++|||+.||+||.+|||+|+++.+ .||++|||||+++|
T Consensus 374 ~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~ 453 (767)
T cd01386 374 SIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQ 453 (767)
T ss_pred EEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccc
Confidence 999999999999984 8999999999999999999999999999999999999987665 79999999999865
Q ss_pred -------------cchhhcchhhhcCCCCChHHHHHHHHHHhcCCCCcCCCC------CCCCceEEEeeCcc--eEEecc
Q 001112 140 -------------GGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPK------LARSDFTICHYAGD--VTYQTE 198 (1154)
Q Consensus 140 -------------~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~p~------~~~~~F~I~H~ag~--V~Y~~~ 198 (1154)
.|||++|||||++|++||++|++||++.+++|++|.++. .....|+|+||||+ |+|++.
T Consensus 454 ~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~ 533 (767)
T cd01386 454 QVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVT 533 (767)
T ss_pred cccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCC
Confidence 599999999999999999999999999999998887622 12468999999995 999999
Q ss_pred chhhhcchhh-hHHHHHHHhhcCCcccccccccchh-------------hcc------------------CCCCCcchHH
Q 001112 199 LFLDKNKDYV-VAEHQALLSASKCSFVSSLFLPLAE-------------ESS------------------KTSKFSSIGS 246 (1154)
Q Consensus 199 ~fl~kN~d~~-~~~~~~ll~~S~~~~v~~lf~~~~~-------------~~~------------------~~~k~~tv~~ 246 (1154)
||++||+|.+ +.+++.+|++|++++|..||+.... ..+ ...+..||++
T Consensus 534 gfleKNkD~~~~~~~~~ll~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~ 613 (767)
T cd01386 534 GWLRRAKPNPAALNAPQLLQDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCV 613 (767)
T ss_pred CHHHhcCCCCChHHHHHHHHhCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHH
Confidence 9999999965 6899999999999999999954210 000 0013458999
Q ss_pred HHHHHHHHHHHHhccCCCeeeeecCCCCCCC----------------------CCcccccchhhhhhccchhhhHHHHhc
Q 001112 247 RFKQQLQQLLETLSSSEPHYIRCVKPNNLLK----------------------PAIFENKNVLQQLRCGGVMEAIRISCA 304 (1154)
Q Consensus 247 ~f~~sl~~L~~~l~~t~~hfirCikPN~~~~----------------------~~~fd~~~v~~QLr~~gvle~iri~~~ 304 (1154)
+|+.||+.||++|++|+||||||||||+.|. |+.||.++|++||||+||+|+|||+++
T Consensus 614 qFk~qL~~Lm~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~ 693 (767)
T cd01386 614 QVKLQVDALIDTLRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRL 693 (767)
T ss_pred HHHHHHHHHHHHHhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhc
Confidence 9999999999999999999999999999974 789999999999999999999999999
Q ss_pred CCCCccChHHHHHHHhhhhhcccC------CCchhHHHHHHHHhhcCCC--Ccccccceeeeeccccchhhhhh
Q 001112 305 GYPTRKPFDEFVDRFGILASKVLD------GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1154)
Q Consensus 305 gyp~r~~~~~F~~ry~~l~~~~~~------~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r 370 (1154)
|||+|++|.+|+.||++|++.... ...|++++|+.||..++++ +|++|+||||||+|+++.||..|
T Consensus 694 Gfp~R~~~~~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 694 GFPISVPLGEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred CCcccccHHHHHHHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 999999999999999999986432 2358899999999998764 89999999999999999999876
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.5e-85 Score=739.28 Aligned_cols=436 Identities=38% Similarity=0.624 Sum_probs=380.6
Q ss_pred CCCHHHHHHHHhhceEee-----CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001112 1 MCDAKALEDSLCKREIVT-----RDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~-----~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~ 75 (1154)
|+|+.+|.-.||.|.+.| +|-.|.+||.+.+|..+||||||+||++||||||.+||.++-.. .+..|||||||.
T Consensus 381 Gld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiA 459 (1259)
T KOG0163|consen 381 GLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIA 459 (1259)
T ss_pred CCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeec
Confidence 789999999999999875 35688999999999999999999999999999999999998553 578999999999
Q ss_pred CCcccCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCC
Q 001112 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1154)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~ 155 (1154)
|||-|.+||||||||||+|||||+|||+.+++.|||.|.+||++...|.|.|||+||+|||.|..|||+|||||.++|+.
T Consensus 460 GFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~ 539 (1259)
T KOG0163|consen 460 GFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKP 539 (1259)
T ss_pred cceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccc
Q 001112 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1154)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1154)
|++.|....+..+++|=+...|+.+ ...|.|+||||.|.|++..|++||.|.+...+..|+..|++||+.
T Consensus 540 s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~ 619 (1259)
T KOG0163|consen 540 SYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLV 619 (1259)
T ss_pred chHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHH
Confidence 9999999999999988777777653 248999999999999999999999999999999999999999999
Q ss_pred cccccchhhccC--C--CCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHH
Q 001112 226 SLFLPLAEESSK--T--SKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRI 301 (1154)
Q Consensus 226 ~lf~~~~~~~~~--~--~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri 301 (1154)
.||++....+++ . -++-|||..|+.+|..||+.|++|..|||||||||....|++||...++.||+|.|+...+++
T Consensus 620 sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~L 699 (1259)
T KOG0163|consen 620 SLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLEL 699 (1259)
T ss_pred HHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHH
Confidence 999975332221 1 256799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccChHHHHHHHhhhhhcccCCCchhHHHHHHHHhhcCCC--CcccccceeeeeccccchhhhhhhhccchhHH
Q 001112 302 SCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSAS 379 (1154)
Q Consensus 302 ~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r~~~l~~~a~ 379 (1154)
+..|||+|-.|.+.+.-|.-.+|..+. ..|++-.|+.+...+|++ +|+||.||||||+|.++..+++-..--...+.
T Consensus 700 Mq~GyPSR~~F~dLYamYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~ 778 (1259)
T KOG0163|consen 700 MQHGYPSRTSFADLYAMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLE 778 (1259)
T ss_pred HhcCCCccccHHHHHHHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHH
Confidence 999999999999999999988877654 479999999999999986 89999999999999999998865544444444
Q ss_pred HHHHHhhhcccchhhhchhhhHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHhhh
Q 001112 380 IIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1154)
Q Consensus 380 ~IQ~~~R~~~~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~ 447 (1154)
.|+ .+-.|+.+-++.+...++..+=..--. -.-|..+++++|++.|||++|+++.....
T Consensus 779 lv~-kVn~WLv~sRWkk~q~~a~sVIKLkNk--------I~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 779 LVA-KVNKWLVRSRWKKSQYGALSVIKLKNK--------IIYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHH-HHHHHHHHhHHHHhhhhhhheeehhhH--------HHHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 444 356677777766554433222110000 01134578889999999999998875443
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=3.2e-85 Score=820.32 Aligned_cols=359 Identities=51% Similarity=0.866 Sum_probs=318.6
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCcccccccccCCcc
Q 001112 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIYGFES 79 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgvLDi~GFE~ 79 (1154)
|||+++|.++||+|++.+++|.+++++++++|..+||+|||+||++||+|||++||.+|++.. ....+||||||||||+
T Consensus 297 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~ 376 (689)
T PF00063_consen 297 GVDSEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFEN 376 (689)
T ss_dssp TS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B--
T ss_pred CCCHHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCcccccc
Confidence 799999999999999999999999999999999999999999999999999999999998865 6789999999999999
Q ss_pred cCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCccchhhcchhhhcCCCCChH
Q 001112 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHE 158 (1154)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~ 158 (1154)
|..||||||||||||||||++|++++|+.||++|.+|||+|+.++| .||++|||||+++|.|||++|||||++|++||+
T Consensus 377 ~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~ 456 (689)
T PF00063_consen 377 FSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDE 456 (689)
T ss_dssp -SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HH
T ss_pred ccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhh
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcCCCC----CCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchh
Q 001112 159 TFAQKLYQTF-KNHKRFSKPK----LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE 233 (1154)
Q Consensus 159 ~~~~kl~~~~-~~~~~~~~p~----~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~ 233 (1154)
+|++++...+ ++|+.|.+|+ .+...|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||.....
T Consensus 457 ~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~ 536 (689)
T PF00063_consen 457 SFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEAT 536 (689)
T ss_dssp HHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH
T ss_pred HHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccc
Confidence 9999999999 8899999886 3678999999999999999999999999999999999999999999999987642
Q ss_pred h---------------------ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhc
Q 001112 234 E---------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRC 292 (1154)
Q Consensus 234 ~---------------------~~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~ 292 (1154)
. .....+.+||+++|+.+|+.||++|++|+||||||||||+.+.|+.||..+|.+|||+
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~ 616 (689)
T PF00063_consen 537 ATSSSSSSLSRRSSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRY 616 (689)
T ss_dssp ---S-S-S-BTTTTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhh
Confidence 0 0011245899999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHhcCCCCccChHHHHHHHhhhhhcccCC----CchhHHHHHHHHhhcCC--CCcccccceeeee
Q 001112 293 GGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDG----SSDEVTACKRLLEKVGL--EGYQIGKTKVFLR 359 (1154)
Q Consensus 293 ~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~----~~~~~~~~~~il~~~~~--~~~qiG~TkVFlr 359 (1154)
+||+|++++++.|||+|++|.+|+.||++|++..... ..++++.|+.||+.+++ ++|++|+||||||
T Consensus 617 ~gile~vri~~~Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 617 SGILETVRIRRQGYPVRLTFDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp TTHHHHHHHHHCSSSEEEEHHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhhhhhcccceecchhhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 9999999999999999999999999999999975532 46899999999999987 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=4.9e-52 Score=512.62 Aligned_cols=456 Identities=30% Similarity=0.417 Sum_probs=380.8
Q ss_pred CCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--CCcccccccccCCcc
Q 001112 2 CDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN--SKSLIGVLDIYGFES 79 (1154)
Q Consensus 2 ~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~--~~~~IgvLDi~GFE~ 79 (1154)
+++..|.+++|.++.+++||.+..+++.++|..+||++||.||++||.|||.+||..+.++.. ....||||||||||+
T Consensus 360 ~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~ 439 (1062)
T KOG4229|consen 360 IKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFEN 439 (1062)
T ss_pred cCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccc
Confidence 678899999999999999999999999999999999999999999999999999999977654 368899999999999
Q ss_pred cCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCChHH
Q 001112 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1154)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1154)
|..|||||||||||||+||++|++|||.+||+||..|+|+|..|.|.||.+|+|+|..||.||+.+||||+.+|++||.+
T Consensus 440 f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~t 519 (1062)
T KOG4229|consen 440 FERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQT 519 (1062)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCCC-CCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhhcc--
Q 001112 160 FAQKLYQTFKNHKRFSKPKLA-RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESS-- 236 (1154)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~~-~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~-- 236 (1154)
++.|+..+++.+..+..|+.. .+.|+|.||||.|.|++.||++||+|+++.+...++++|.+.++..++...+....
T Consensus 520 l~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~ 599 (1062)
T KOG4229|consen 520 LLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRW 599 (1062)
T ss_pred HHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcc
Confidence 999999999988888877754 57999999999999999999999999999999999999988877765542110000
Q ss_pred --------------------------------------------------------------C-----------------
Q 001112 237 --------------------------------------------------------------K----------------- 237 (1154)
Q Consensus 237 --------------------------------------------------------------~----------------- 237 (1154)
.
T Consensus 600 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~ 679 (1062)
T KOG4229|consen 600 FELRALKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALE 679 (1062)
T ss_pred hhhhhhcccccccchhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhh
Confidence 0
Q ss_pred ------C-------------------C--------------C--------------------------------------
Q 001112 238 ------T-------------------S--------------K-------------------------------------- 240 (1154)
Q Consensus 238 ------~-------------------~--------------k-------------------------------------- 240 (1154)
+ . +
T Consensus 680 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 759 (1062)
T KOG4229|consen 680 QGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLP 759 (1062)
T ss_pred hcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhccccc
Confidence 0 0 0
Q ss_pred ------------CcchHH----------------HHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhc
Q 001112 241 ------------FSSIGS----------------RFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRC 292 (1154)
Q Consensus 241 ------------~~tv~~----------------~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~ 292 (1154)
...++. .+......++..+....|.|++|++-|..+....|+...|..|+++
T Consensus 760 ~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 839 (1062)
T KOG4229|consen 760 RYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSY 839 (1062)
T ss_pred ccCccccCCccccchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhc
Confidence 000111 1223334466667777889999999998788889999999999999
Q ss_pred cchhhhHHHHhcCCCCccChHHHHHHHhhhhhcccCCCchhHHHHHHHHhh--cCCCCcccccceeeeeccccchhhh-h
Q 001112 293 GGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEK--VGLEGYQIGKTKVFLRAGQMADLDA-R 369 (1154)
Q Consensus 293 ~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~--~~~~~~qiG~TkVFlr~~~~~~Le~-~ 369 (1154)
.|+++..++...+|+..+++.+|..-+.+..|.... ......... .+.++++.|.+++|+...-...++. +
T Consensus 840 t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l 913 (1062)
T KOG4229|consen 840 TGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVAL 913 (1062)
T ss_pred hhhhccchheeccccccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHH
Confidence 999999999999999999999999999988773221 111122222 2456899999999998766544432 2
Q ss_pred hhhccchhHHHHHHHhhhcccchhhhchhhhHHHHHHHHHhhhhhhhhh-hccchhhhhhHHHHHHHHHHHHHHHHhhhh
Q 001112 370 RTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYE-SMRREASCLRIQRDLRMYLAKKAYKDMCFS 448 (1154)
Q Consensus 370 r~~~l~~~a~~IQ~~~R~~~~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~-~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~a 448 (1154)
..+....-+...|++++....++.|.++..+.+.+| |++++.|+... ......||+-+|..|+.+..+..+...+.+
T Consensus 914 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 991 (1062)
T KOG4229|consen 914 KDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRS 991 (1062)
T ss_pred hHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhh
Confidence 222222136678999999999999999999999999 88888877554 223456888999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHH
Q 001112 449 AVCIQTGMRGMAARNEL 465 (1154)
Q Consensus 449 ~i~iQs~~Rg~~aR~~~ 465 (1154)
.+.+|..+++..-+..+
T Consensus 992 ~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 992 FIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hcchhcccccchhhhhH
Confidence 99999999887666554
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.97 E-value=3.4e-31 Score=307.21 Aligned_cols=313 Identities=19% Similarity=0.331 Sum_probs=245.9
Q ss_pred hHHhhhhcHHHHHHHhh-hcCCCCCCCCchHHHHHHHHhhhcc--hhhhh----HHHHHHHHHHHHHhhccc-CCccchh
Q 001112 745 HIEHQHENVDALINCVA-KNLGYCNGKPVAAFTIYKCLLHWKS--FEAER----TSVFDRLIQMIGSAIENE-DDNDHMA 816 (1154)
Q Consensus 745 l~e~~~e~~~~li~~l~-~~~~~~~~~p~~A~il~~c~~~~~~--~~~e~----~~ll~~ii~~i~~~i~~~-~d~~~l~ 816 (1154)
-+|+....++..+..++ .+.+-++++.+|-|- |..-.|++. +..++ ..||.++++.+..+++++ ++...|+
T Consensus 542 si~~~d~~~~sfL~~vi~~~a~t~~~~~s~~y~-y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~La 620 (1629)
T KOG1892|consen 542 SIEFRDSSEDSFLSAVINTNASTVHFKLSPTYR-YVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALA 620 (1629)
T ss_pred ceecccCcHHHHHHHHHhCcccccccccCcccc-hhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 33566666777777766 455555555555542 222234433 44444 899999999999999998 6666999
Q ss_pred hHHHhHHHHHHHHHHHhhhcCCCCCCCCCCCCCccchhhhhhcccCCCCCchhhhhHHhhHHHHhhhccchhHHHHHHHH
Q 001112 817 YWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLA 896 (1154)
Q Consensus 817 fWLSN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~f~q~L~ 896 (1154)
|||+|+++++||++++-..+ .+. +.-+..|.
T Consensus 621 FWmANaSEflhfik~Dr~ls--------------------------------~~~-----------------~~aq~vla 651 (1629)
T KOG1892|consen 621 FWMANASEFLHFIKQDRDLS--------------------------------RIT-----------------LDAQDVLA 651 (1629)
T ss_pred HhhcCHHHHHHHHHhccchh--------------------------------hee-----------------hhHHHHHH
Confidence 99999999999998862211 111 01123455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001112 897 AYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIF 976 (1154)
Q Consensus 897 ~~~~~iy~~l~~~~~~~l~~~L~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f 976 (1154)
..++.+|..|+.+++.+|++.+...+... ........++|.+|+..+.+|+.|+|+..|+.|+|
T Consensus 652 ~~vq~aFr~LV~clqsel~~~~~afLden----------------~~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLf 715 (1629)
T KOG1892|consen 652 HLVQMAFRYLVHCLQSELNNYMPAFLDEN----------------SLQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLF 715 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------------cccCccccchHHHhHHHHHHHHHhccchHHHHHHH
Confidence 66889999999999999998886554210 12234678999999999999999999999999999
Q ss_pred HHHHHhhhHHHhHhhhcc--CCCCCCchhHHHhhchHHHHHHHhhcccccccchHHHhHHHHHHHhHHhhcccccCCHHH
Q 001112 977 TQTFSYINVQLFNSLLLR--RECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDE 1054 (1154)
Q Consensus 977 ~Qlf~~ina~lfN~Ll~r--~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~ 1054 (1154)
+|||+|||+++||+|+.. ..+|+--||--|++.|..||.||+..|++.+++ |||..|+||++||+++|....|...
T Consensus 716 sqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAd--CHL~ri~Qaa~lL~~~K~a~ddi~~ 793 (1629)
T KOG1892|consen 716 SQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAAD--CHLSRIVQAATLLTMDKYAPDDIPN 793 (1629)
T ss_pred HHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhh--ccHHHHHHHHHHHhccccChhhHHh
Confidence 999999999999999998 679999999999999999999999999888887 9999999999999999876666667
Q ss_pred HHhccCcCCCHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhhhcCCC---CCCC--cccccCCCcccccCcccccc
Q 001112 1055 ITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSND---ATSN--SFLLDDNSSIPFSVDDLSNS 1127 (1154)
Q Consensus 1055 i~~~~c~~Ls~~Ql~kil~~Y~~d~~e~~~v~~~~i~~v~~~~~~~~~~---~~~~--~lllD~~~~~Pf~~~~~~~~ 1127 (1154)
+ ...|.+||+.|+.+||..|++++.|+ ++|.+++..+..+.....+. ++.. +|--+++..+||.+++=..+
T Consensus 794 l-~stCfkLNSLQ~~alLq~~~~~~~e~-~~p~dlvd~v~r~AE~~ADeLtr~DGreV~LEEspeL~LpfLlP~DGys 869 (1629)
T KOG1892|consen 794 L-NSTCFKLNSLQLQALLQNYHCAPDEP-FIPTDLVDNVVRVAENTADELTRSDGREVQLEESPELQLPFLLPEDGYS 869 (1629)
T ss_pred h-ccchhhcchHHHHHHHhcCCCCCCCC-CCchHHHHHHHHHHHhhhhHhhhccCceeecccCcccccceeecCCCce
Confidence 7 78999999999999999999999995 99999999997766554332 2222 45557778899988883333
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.95 E-value=1.8e-28 Score=233.05 Aligned_cols=105 Identities=36% Similarity=0.647 Sum_probs=87.8
Q ss_pred HHHHHHHHhhhHHHhHhhhccCCCCCCchhHHHhhchHHHHHHHhhcccccccchHHHhHHHHHHHhHHhhcccccCCHH
Q 001112 974 KIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYD 1053 (1154)
Q Consensus 974 Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~ 1053 (1154)
|+|+|+|+|||+.+||+||.|+++|+|++|+|||+||+.||+||+++|++.+ ++++|.|++||++|||++|++..|.+
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999995433 68999999999999999755555444
Q ss_pred HHHhccCcCCCHHHHHHHHhccccCCCC
Q 001112 1054 EITNDLCPILSVQQLYRICTLYWDDNYN 1081 (1154)
Q Consensus 1054 ~i~~~~c~~Ls~~Ql~kil~~Y~~d~~e 1081 (1154)
.+ +++||+|||.||++||++|+||+||
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 45 7999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.24 E-value=1.9e-08 Score=133.10 Aligned_cols=204 Identities=14% Similarity=0.131 Sum_probs=110.3
Q ss_pred hhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCChHH----H-HHHH
Q 001112 90 INLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET----F-AQKL 164 (1154)
Q Consensus 90 iNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~----~-~~kl 164 (1154)
.++|-+-+....+..+|.. ...+...+++|+ .+-..+|.+++-...-||.+ .|-+. | -+||
T Consensus 413 ~~~~v~alAk~lYerlF~w-lV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---------nSFEQLciNytnEkL 478 (1930)
T KOG0161|consen 413 VLFAVEALAKALYERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---------NSFEQLCINYTNEKL 478 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cccCCcceeeeeccccccCc---------CCHHHHHHHHHHHHH
Confidence 8888888888888888854 677888899987 45555665555433223322 11111 1 2344
Q ss_pred HHHhcCCCCcCCCC----CCCCceEEEeeCcceEEeccchhhhcchhh--hHHHHHHHhhcCCcccccccccchhhccCC
Q 001112 165 YQTFKNHKRFSKPK----LARSDFTICHYAGDVTYQTELFLDKNKDYV--VAEHQALLSASKCSFVSSLFLPLAEESSKT 238 (1154)
Q Consensus 165 ~~~~~~~~~~~~p~----~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~--~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~ 238 (1154)
.+ |.+|..|..-. --.-.++.-||+-+- =.+.+-|+|=...+ -++-.-+..+|...|+..|+.... .+.
T Consensus 479 Qq-fFnh~mFvlEqeeY~~EgIew~fidfG~Dl-q~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~---gk~ 553 (1930)
T KOG0161|consen 479 QQ-FFNHHMFVLEQEEYQREGIEWDFIDFGLDL-QPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQHL---GKH 553 (1930)
T ss_pred Hh-hhcchhhhhhHHHHHHhCCceeeeccccch-hhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHhh---ccC
Confidence 33 33455554311 012356667773332 12334444432211 112222234555566665554321 112
Q ss_pred CCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHHH
Q 001112 239 SKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDR 318 (1154)
Q Consensus 239 ~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~r 318 (1154)
++|.... ......-+....-+.+ |+|.-+|-..++..-.+..|+.+|++++ .+.|...-.| +..+..+..+
T Consensus 554 ~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~ 624 (1930)
T KOG0161|consen 554 PKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKG 624 (1930)
T ss_pred ccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhh
Confidence 2221111 2223333333444444 9999999998888888899999999999 7877766544 4455555555
Q ss_pred Hhh
Q 001112 319 FGI 321 (1154)
Q Consensus 319 y~~ 321 (1154)
+..
T Consensus 625 ~~~ 627 (1930)
T KOG0161|consen 625 GEA 627 (1930)
T ss_pred hhh
Confidence 443
No 26
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.40 E-value=1.2e-06 Score=108.57 Aligned_cols=86 Identities=38% Similarity=0.517 Sum_probs=80.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001112 423 EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQC 502 (1154)
Q Consensus 423 ~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~ 502 (1154)
..+++.||+.+|+|..|+.|.++|++++.+|+.+||.++|+ ... +..||+.||+.||++..|+.|+..+.+++.+|+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs 749 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS 749 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999998 333 778999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 001112 503 AWRGKVARR 511 (1154)
Q Consensus 503 ~~R~~~arr 511 (1154)
.+|++.+|.
T Consensus 750 ~~r~~~~r~ 758 (862)
T KOG0160|consen 750 GVRAMLARN 758 (862)
T ss_pred HHHHHHhcc
Confidence 999999998
No 27
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.29 E-value=1.1e-06 Score=108.65 Aligned_cols=118 Identities=26% Similarity=0.300 Sum_probs=73.8
Q ss_pred ccchhHHHHHHHhhhcccchhhhchhhhHHHHHHHHHhhhhhhhhhhccc--------hhhhhhHHHHHHHHHHHHHHHH
Q 001112 373 VLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRR--------EASCLRIQRDLRMYLAKKAYKD 444 (1154)
Q Consensus 373 ~l~~~a~~IQ~~~R~~~~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~--------~~AAi~IQ~~~R~~~~Rk~y~~ 444 (1154)
....++..||.++|+|..|+.|.-+|.-++.||+.+||+..|+.|.++-. --++.++|+-+|+|..+....+
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 34568899999999999999999999999999999999999998876441 1234445555555555555444
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 001112 445 MCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHY 490 (1154)
Q Consensus 445 ~r~a~i~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~ 490 (1154)
.-.+++.+|..+|-+..-++....+.++|++.||+.+|.+.++..|
T Consensus 888 ~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqy 933 (975)
T KOG0520|consen 888 QETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQY 933 (975)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4444444454444444333333333444444444444444444333
No 28
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.16 E-value=0.00042 Score=88.98 Aligned_cols=89 Identities=22% Similarity=0.175 Sum_probs=72.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH-
Q 001112 423 EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQ- 501 (1154)
Q Consensus 423 ~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ- 501 (1154)
..+++.||+.|||+..|++|.+....+..+|...+|+..|+....-....+++.+|..|+....|..|+.....+..+|
T Consensus 745 ~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~ 824 (1463)
T COG5022 745 DNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQK 824 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHH
Confidence 3588889999999999999998888888888888888888777666666788889999999999988888888888888
Q ss_pred HhHHHHHHHH
Q 001112 502 CAWRGKVARR 511 (1154)
Q Consensus 502 ~~~R~~~arr 511 (1154)
..+|....+.
T Consensus 825 ~i~~~~~~~~ 834 (1463)
T COG5022 825 TIKREKKLRE 834 (1463)
T ss_pred HHHHHHHHhH
Confidence 5555554443
No 29
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.95 E-value=1.4e-05 Score=99.11 Aligned_cols=116 Identities=24% Similarity=0.354 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHhhh----------hHHhHHHHHHHHHHHHHHHHH
Q 001112 399 RSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCF----------SAVCIQTGMRGMAARNELRFR 468 (1154)
Q Consensus 399 ~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~----------a~i~iQs~~Rg~~aR~~~~~~ 468 (1154)
.++..||..+|||..|+.+--+| .-+++||+.+|||..|+.|.++.. ++..+|..+||+..|+..+..
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr--~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTR--QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccC--CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 46788999999999999888777 458899999999999999987654 455678888888777665433
Q ss_pred HhhhhHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHhHHHHHHHHHHHHHHH
Q 001112 469 RQTRASILIQSHCRKYLAR--LHYMKLKKAAITTQCAWRGKVARRELRKLKM 518 (1154)
Q Consensus 469 ~~~~aa~~IQ~~~R~~~~r--~~~~~~~~a~i~iQ~~~R~~~arr~l~~lk~ 518 (1154)
..||+.||..+|.|+.- ..|.++.++++.||+.+|-..++.+++++..
T Consensus 889 --~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 889 --ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33889999999999887 6788899999999999999999877776654
No 30
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.87 E-value=0.021 Score=69.81 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=20.1
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCHHH
Q 001112 945 SSHWQSIIDSLNTLLSTLKQNFVPPVL 971 (1154)
Q Consensus 945 ~~~~~~il~~L~~~~~~l~~~~v~~~l 971 (1154)
..++...+..+|+.+..+....++++.
T Consensus 898 ~~~lr~sleq~nstl~ll~~~~~~~Ey 924 (1243)
T KOG0971|consen 898 YECLRQSLEQLNSTLNLLATAMQEGEY 924 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 456888888889988888866655543
No 31
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0075 Score=72.33 Aligned_cols=68 Identities=25% Similarity=0.337 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 614 LTSENEKLKTLVSSLEKKIDETEKKFEET-------SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~-------~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
+...+..|+.+++.|..++.++..++.++ +.+.+++.+..+-....+.+++..++++++.+..|--|.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 44444444444444444444444444333 333333333333334444455555555555555444443
No 32
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.07 Score=64.46 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=16.8
Q ss_pred cCCCCCCchhHHHhhchHHHHHHHh
Q 001112 994 RRECCTFSNGEYVKAGLAELELWCC 1018 (1154)
Q Consensus 994 r~~~cs~s~G~qIr~nls~Le~W~~ 1018 (1154)
.++-.-|--|.=+.-+=-+.--|+=
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GWFP 1032 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGWFP 1032 (1118)
T ss_pred ecCCCccchhhHhhcCCcccccccc
Confidence 4667778888777666666555654
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.43 E-value=0.046 Score=68.65 Aligned_cols=109 Identities=10% Similarity=0.221 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001112 565 LQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVV-EELTSENEKLKTLVSSLEKKIDETEKKFEETS 643 (1154)
Q Consensus 565 L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~e~~~~-~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~ 643 (1154)
++.+..+||.++..+..++....++...+..+...+ ... .+-..+.+.|-..+..++++...||..+..-.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l--------r~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt 614 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQEL--------RKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET 614 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455556666666666655554444444443332100 000 11122333344444445555555555444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 644 KISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 644 ~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
+.+.++-..|-++..++...+..+..-+.+|.+|+..+
T Consensus 615 riKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 615 RIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333333333333333
No 34
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.37 Score=61.55 Aligned_cols=47 Identities=26% Similarity=0.220 Sum_probs=27.9
Q ss_pred HHHhHHHHHHHhHHhhcccccCCHHHHHhccC---cCCCHHHHHHHHhccccC
Q 001112 1029 WDELKHIRQAVGFLVIHQKYRISYDEITNDLC---PILSVQQLYRICTLYWDD 1078 (1154)
Q Consensus 1029 ~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c---~~Ls~~Ql~kil~~Y~~d 1078 (1154)
.+.|.|..+-+.|-+.| ++.++..| ..+- -.||+.=|.=.|.+|+|.
T Consensus 1169 VDslDPFseGV~FSVrP--pKKSWK~I-~NLSGGEKTLSSLALVFALH~YkPT 1218 (1293)
T KOG0996|consen 1169 VDSLDPFSEGVMFSVRP--PKKSWKNI-SNLSGGEKTLSSLALVFALHHYKPT 1218 (1293)
T ss_pred eccCCCcccCceEEeeC--chhhhhhc-ccCCcchhHHHHHHHHHHHHccCCC
Confidence 45566666666666665 45555544 1221 256777777777777764
No 35
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.33 E-value=0.89 Score=58.19 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+.+..+..+.+..++.|+.+++.++..+..+..+..+...++...+......+.++..++.+++....++..|+.
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555555555555555555555555555555556666666666666655554
No 36
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.27 E-value=0.052 Score=54.58 Aligned_cols=128 Identities=25% Similarity=0.313 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 001112 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVP 604 (1154)
Q Consensus 525 ~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e~~ 604 (1154)
........++.++.+++.+.. .+..++..|+..+..++.+++.+...+......+.....
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~--------- 70 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK--------- 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------
Confidence 344556667777777766655 566788888888888888888887776433222211100
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 605 VIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 605 ~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
.....+.|...+..|+.+++.....+.+...++.++..... ..+.++..++.+...++.++..+....
T Consensus 71 --~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae-------~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 71 --RKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE-------HFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred --HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 01122345555555555555555554444444444443333 334444444444444444444444433
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.20 E-value=0.67 Score=63.26 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 001112 661 VQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 661 ~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
..++.++..++.++..++.++
T Consensus 472 ~~~~~~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 472 YDLKEEYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 38
>PRK11637 AmiB activator; Provisional
Probab=97.20 E-value=0.1 Score=62.83 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 634 ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
+++.+..+++....+....+..++......+.++..|+....+|+..+..+
T Consensus 202 e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 202 EQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333444444444444444444444433
No 39
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.14 E-value=0.93 Score=61.91 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+...+..+..++.++..++.++..++.++..++.
T Consensus 457 ~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~ 490 (1164)
T TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444433
No 40
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=97.09 E-value=0.00032 Score=89.71 Aligned_cols=267 Identities=17% Similarity=0.103 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCccccc-chhhhhhccchhhhHHHHhcCCCCccChHHHHHHHhhh
Q 001112 244 IGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENK-NVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGIL 322 (1154)
Q Consensus 244 v~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~-~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 322 (1154)
++.+++-++....+.|.+..+||.|||++|..-.+..++.. .+..++..-|...+....+.|+..+..|.+++.+++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 34455567778888888899999999999999999999987 89999999999999999999999999999988776633
Q ss_pred hhcccCCCchhHHHHHHHHhhcCCCCcccccceeeeeccccchhhhhhhhccch--------------------------
Q 001112 323 ASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGR-------------------------- 376 (1154)
Q Consensus 323 ~~~~~~~~~~~~~~~~~il~~~~~~~~qiG~TkVFlr~~~~~~Le~~r~~~l~~-------------------------- 376 (1154)
.-.......-.+.+|..++.+.+.+.+..+.++++.+.---..+.-.+.+...+
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~ 803 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLE 803 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccch
Confidence 211111112235567778888888888888888888654433332222222111
Q ss_pred hHHHHHHHhhhcccchhhhch----hhhHHHHHHHHHhhhhhhhhhh---------------------------------
Q 001112 377 SASIIQRKVRSYLSRKNYIML----RRSAIHIQAACRGQLARTVYES--------------------------------- 419 (1154)
Q Consensus 377 ~a~~IQ~~~R~~~~Rk~y~~~----r~a~i~IQ~~~Rg~lar~~~~~--------------------------------- 419 (1154)
.+..||+-++....+..+..+ -.+.+.+|..|-|...+.+...
T Consensus 804 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~ 883 (1062)
T KOG4229|consen 804 SYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFS 883 (1062)
T ss_pred hhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhhee
Confidence 122333333322222222111 1234555555554333222210
Q ss_pred -----------------------------ccchhh---hhhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHH-
Q 001112 420 -----------------------------MRREAS---CLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELR- 466 (1154)
Q Consensus 420 -----------------------------~r~~~A---Ai~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~~aR~~~~- 466 (1154)
+..+.. +...|++++....++.+.++..+.+.+| ++++..|+...
T Consensus 884 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~ 961 (1062)
T KOG4229|consen 884 TLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPV 961 (1062)
T ss_pred ecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcc
Confidence 000011 3456777777777788888888888888 66666665433
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHH
Q 001112 467 FRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRE 512 (1154)
Q Consensus 467 ~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arr~ 512 (1154)
......++.-+|..|+.+..+..+...+++.+.+|..+++..-+..
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1007 (1062)
T KOG4229|consen 962 AGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMI 1007 (1062)
T ss_pred hhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhh
Confidence 2233456777888888888888888888888888877776654443
No 41
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.03 E-value=0.00063 Score=44.54 Aligned_cols=20 Identities=45% Similarity=0.605 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 001112 424 ASCLRIQRDLRMYLAKKAYK 443 (1154)
Q Consensus 424 ~AAi~IQ~~~R~~~~Rk~y~ 443 (1154)
.||++||++||||.+|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46777777777777777763
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.00 E-value=0.1 Score=65.56 Aligned_cols=80 Identities=20% Similarity=0.202 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH---------------------
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK-------ISEERLKQALEAESKI--------------------- 660 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~-------~~~~~~~~l~~~e~~~--------------------- 660 (1154)
.+...|+.|..+|+.++...++.+..+|.+..++.. +.+.+...|..++++.
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaL 624 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSAL 624 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344566666666666666555555555554433322 2222222222222222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 661 VQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 661 ~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
.+-+++++-++..+..-+.|+..|+++.
T Consensus 625 g~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 625 GDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2445566666677777788888888753
No 43
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.97 E-value=0.0064 Score=72.57 Aligned_cols=84 Identities=20% Similarity=0.108 Sum_probs=60.9
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh------
Q 001112 420 MRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKL------ 493 (1154)
Q Consensus 420 ~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~------ 493 (1154)
.+...-++.||+.||||.+|.+|++++.+++.|+ ++|.+..+ ..+..||+.+|++..++.|.+-
T Consensus 693 ~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk~~~WP~p 762 (1001)
T KOG0164|consen 693 ERLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGKSIRWPAP 762 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCCCCCCCCC
Confidence 3345678999999999999999999999999998 77754333 2456789999999999988653
Q ss_pred ----hhHHHHHHHhHHHHHHHHHH
Q 001112 494 ----KKAAITTQCAWRGKVARREL 513 (1154)
Q Consensus 494 ----~~a~i~iQ~~~R~~~arr~l 513 (1154)
+...-.+|..+-+|.+.+-+
T Consensus 763 P~~Lr~~~~~L~~lf~rwra~~~~ 786 (1001)
T KOG0164|consen 763 PLVLREFEELLRELFIRWRAWQIL 786 (1001)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444444333
No 44
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.93 E-value=0.3 Score=52.95 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1154)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~ 660 (1154)
...+.+.|+.+...++.+..+++.++.++..+..+++++...+..++...+..+
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777777776666666655555544443
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.93 E-value=0.63 Score=63.51 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+.....++...+.++.+++.++..++.+++.+++
T Consensus 444 LenF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 444 LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555554444
No 46
>PRK11637 AmiB activator; Provisional
Probab=96.92 E-value=0.35 Score=58.16 Aligned_cols=25 Identities=12% Similarity=0.418 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 660 IVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
+..|+.+....+..+.+|+.+...+
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333343333333333
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.26 Score=61.80 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETE 636 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1154)
+.++..|++++..+++.+++.....+.-+
T Consensus 786 e~rlkdl~keik~~k~~~e~~~~~~ek~~ 814 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAEESSKELEKRE 814 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665555554444333
No 48
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=1.3 Score=56.81 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=7.9
Q ss_pred HHHHHHHHhhcCCC
Q 001112 334 VTACKRLLEKVGLE 347 (1154)
Q Consensus 334 ~~~~~~il~~~~~~ 347 (1154)
...+..+|...|+|
T Consensus 208 ~~~V~~lLk~~gID 221 (1293)
T KOG0996|consen 208 FKDVTKLLKSHGID 221 (1293)
T ss_pred HHHHHHHHHhcCCC
Confidence 34466667665543
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.81 E-value=1 Score=61.59 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=18.4
Q ss_pred cCCccccccccCcHHHHHHhhcCccchhhcchhhh
Q 001112 116 EAINWSYIEFVDNQDILDLIEKKPGGIIALLDEAC 150 (1154)
Q Consensus 116 E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~ 150 (1154)
-||.-....|..-..+-.++..+|...+.++|+..
T Consensus 131 ~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 165 (1179)
T TIGR02168 131 TGLGKRSYSIIEQGKISEIIEAKPEERRAIFEEAA 165 (1179)
T ss_pred cCCCcccchheecccHHHHHcCCHHHHHHHHHHHc
Confidence 35543333333333445555556667777777654
No 50
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.73 E-value=2.7 Score=57.36 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=4.6
Q ss_pred HHHHHhhcCC
Q 001112 337 CKRLLEKVGL 346 (1154)
Q Consensus 337 ~~~il~~~~~ 346 (1154)
+..+|..+++
T Consensus 124 ~~~~l~~~~i 133 (1179)
T TIGR02168 124 IQDLFLDTGL 133 (1179)
T ss_pred HHHHHhccCC
Confidence 3445544443
No 51
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.70 E-value=0.61 Score=49.52 Aligned_cols=70 Identities=24% Similarity=0.256 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHH
Q 001112 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMH---RLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~---~Le~~i~~Le~e~~~l~q 686 (1154)
.+..|.+-+.+|++..+.+|..........++...++..+-.+..-|+.++. .|-+.+..|++|-..|+|
T Consensus 106 ikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrq 178 (333)
T KOG1853|consen 106 IKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQ 178 (333)
T ss_pred HHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444433333333334444444444333333333332 222344444444444444
No 52
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.60 E-value=2.1 Score=58.19 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=6.4
Q ss_pred cchhhhHHHHhcCC
Q 001112 293 GGVMEAIRISCAGY 306 (1154)
Q Consensus 293 ~gvle~iri~~~gy 306 (1154)
.|+..+......|+
T Consensus 501 ~~~~~~~~~~~~~~ 514 (1163)
T COG1196 501 QGVRAVLEALESGL 514 (1163)
T ss_pred hhHHHHHHHHhccC
Confidence 33444444555444
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.52 E-value=0.8 Score=50.39 Aligned_cols=29 Identities=24% Similarity=0.380 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 653 ALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
.+.++..+..|+.++..|+..+...+...
T Consensus 192 ae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 192 AEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333
No 54
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=2.8 Score=53.06 Aligned_cols=13 Identities=38% Similarity=0.823 Sum_probs=7.7
Q ss_pred Cccchhhcchhhh
Q 001112 138 KPGGIIALLDEAC 150 (1154)
Q Consensus 138 ~~~Gil~lLdee~ 150 (1154)
||.-|++++.|..
T Consensus 157 Kp~EILsMvEEAA 169 (1174)
T KOG0933|consen 157 KPSEILSMVEEAA 169 (1174)
T ss_pred CcHHHHHHHHHhh
Confidence 4556666666643
No 55
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.46 E-value=4 Score=51.04 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 646 ~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
..++.++++.+++.+-+...++...++.+..|++.+..++.+.
T Consensus 506 ~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~ 548 (1243)
T KOG0971|consen 506 RKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQ 548 (1243)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555566666666666666667777777777776666544
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.45 E-value=0.4 Score=57.69 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001112 525 ALQAAKNKLEKQVEELTWRLQ 545 (1154)
Q Consensus 525 ~L~~~~~~LE~kv~el~~~l~ 545 (1154)
.|+.....|+.++.+++..|.
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544444
No 57
>PRK02224 chromosome segregation protein; Provisional
Probab=96.43 E-value=5.8 Score=52.57 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=11.8
Q ss_pred cCCCCcccccceeeeeccccchh
Q 001112 344 VGLEGYQIGKTKVFLRAGQMADL 366 (1154)
Q Consensus 344 ~~~~~~qiG~TkVFlr~~~~~~L 366 (1154)
+|++.-.| ..-||+..|.+..+
T Consensus 122 lg~~~~~f-~~~~~i~Qge~~~~ 143 (880)
T PRK02224 122 LRMDAEAF-VNCAYVRQGEVNKL 143 (880)
T ss_pred HCCCHHHh-cceeEeeccChHHH
Confidence 35542223 34478888876443
No 58
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.38 E-value=1 Score=52.49 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001112 641 ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 641 e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
|-++...++...+...++++.+|..+-.+|+..|.+++.+..
T Consensus 207 E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 207 ERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333444444444455555555555556666666654443
No 59
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.37 E-value=1.4 Score=45.66 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 653 ALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
+.++...+..+..-..+|+.++..|++.+
T Consensus 160 i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 160 IEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555555544
No 60
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.36 E-value=0.59 Score=56.33 Aligned_cols=23 Identities=30% Similarity=0.422 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001112 522 ETGALQAAKNKLEKQVEELTWRL 544 (1154)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~~l 544 (1154)
+.+.|.+.+..|+.++..++.++
T Consensus 151 E~eeL~~~~~~Le~e~~~l~~~v 173 (546)
T PF07888_consen 151 EKEELLKENEQLEEEVEQLREEV 173 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555544444333
No 61
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.34 E-value=0.81 Score=46.05 Aligned_cols=60 Identities=23% Similarity=0.334 Sum_probs=32.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 627 ~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+..++.-++..+...+........++.++..+..+++..+..|+.+....+..++.+..
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444444444444444444444555555555555566666666666666666666555544
No 62
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.33 E-value=0.064 Score=69.38 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHH-------hhhhHHhHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh-----
Q 001112 428 RIQRDLRMYLAKKAYKD-------MCFSAVCIQTGMRGMAA--RNELRFRRQTRASILIQSHCRKYLARLHYMKL----- 493 (1154)
Q Consensus 428 ~IQ~~~R~~~~Rk~y~~-------~r~a~i~iQs~~Rg~~a--R~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~----- 493 (1154)
++|+..||+..|..+.. .-+.+..+|+.|||++. -+.....-....++.+|++.|++..|..|.+.
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~ 619 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFK 619 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44777777666655432 23456677777777763 22222233345567777777777777665443
Q ss_pred --hhHHHHHHHhHHHHHHHHHHHHHHH
Q 001112 494 --KKAAITTQCAWRGKVARRELRKLKM 518 (1154)
Q Consensus 494 --~~a~i~iQ~~~R~~~arr~l~~lk~ 518 (1154)
..+++.+|+..|....|..++.+.-
T Consensus 620 ~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 620 DNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred HhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 3566777777777777777766553
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.33 E-value=5.5 Score=51.36 Aligned_cols=9 Identities=56% Similarity=0.527 Sum_probs=5.1
Q ss_pred HHHHHhhhh
Q 001112 405 QAACRGQLA 413 (1154)
Q Consensus 405 Q~~~Rg~la 413 (1154)
|-..|.||+
T Consensus 184 QD~aR~FL~ 192 (1074)
T KOG0250|consen 184 QDAARSFLA 192 (1074)
T ss_pred HHHHHHHHh
Confidence 555565554
No 64
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.28 E-value=0.16 Score=55.86 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001112 561 ENAKLQSALQEMQLQFKES 579 (1154)
Q Consensus 561 e~~~L~~~l~~le~~l~~~ 579 (1154)
++..|..++..++..++..
T Consensus 37 e~~~l~rri~~lE~~le~~ 55 (237)
T PF00261_consen 37 EVASLQRRIQLLEEELERA 55 (237)
T ss_dssp HHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444433
No 65
>PRK02224 chromosome segregation protein; Provisional
Probab=96.27 E-value=3 Score=55.22 Aligned_cols=9 Identities=11% Similarity=0.349 Sum_probs=3.4
Q ss_pred CCHHHHHHH
Q 001112 1085 VSPNVISSM 1093 (1154)
Q Consensus 1085 v~~~~i~~v 1093 (1154)
+++.-...+
T Consensus 824 lD~~~~~~~ 832 (880)
T PRK02224 824 LDSGHVSQL 832 (880)
T ss_pred CCHHHHHHH
Confidence 333333333
No 66
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.22 E-value=1.4 Score=50.92 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHH
Q 001112 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR----LEEKVSDMETENQ 682 (1154)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~----Le~~i~~Le~e~~ 682 (1154)
+.++++.+..+...++..++..+.++.+++.++.++....+++..+..+++..+.++++..+. -..++..|+.+..
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 355666666666666666666666666666666666665555555555555555555444432 2236777777777
Q ss_pred HHHHh
Q 001112 683 ILRQQ 687 (1154)
Q Consensus 683 ~l~qq 687 (1154)
.|+..
T Consensus 287 ~Le~~ 291 (325)
T PF08317_consen 287 ALEKL 291 (325)
T ss_pred HHHHH
Confidence 77763
No 67
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.18 E-value=0.0067 Score=39.72 Aligned_cols=19 Identities=58% Similarity=0.833 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 001112 472 RASILIQSHCRKYLARLHY 490 (1154)
Q Consensus 472 ~aa~~IQ~~~R~~~~r~~~ 490 (1154)
++|+.||++||+|++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3566666666666666655
No 68
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.07 E-value=10 Score=51.82 Aligned_cols=17 Identities=12% Similarity=-0.075 Sum_probs=7.6
Q ss_pred HHhhchHHHHHHHhhcc
Q 001112 1005 YVKAGLAELELWCCQAK 1021 (1154)
Q Consensus 1005 qIr~nls~Le~W~~~~~ 1021 (1154)
.++-.+..++.=+..-|
T Consensus 946 ~~~~~i~~le~~i~~lg 962 (1163)
T COG1196 946 ELEREIERLEEEIEALG 962 (1163)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44444444444444433
No 69
>PRK09039 hypothetical protein; Validated
Probab=96.04 E-value=0.9 Score=52.74 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 523 TGALQAAKNKLEKQVEELTWRLQLEKRMRV 552 (1154)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~~l~~e~~~~~ 552 (1154)
+..+.+...+|+.++.+|..-+..+.....
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~ 77 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQ 77 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566677777777666665554433
No 70
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.03 E-value=3.9 Score=50.05 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 001112 427 LRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKL 493 (1154)
Q Consensus 427 i~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~ 493 (1154)
-.|++ +..|+.+.+|.+....+..+=.. +.+ ..-+..+.+++|++.|||++|++++..
T Consensus 778 ~lv~k-Vn~WLv~sRWkk~q~~a~sVIKL------kNk--I~yRae~v~k~Q~~~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 778 ELVAK-VNKWLVRSRWKKSQYGALSVIKL------KNK--IIYRAECVLKAQRIARGYLARKRHRPR 835 (1259)
T ss_pred HHHHH-HHHHHHHhHHHHhhhhhhheeeh------hhH--HHHHHHHHHHHHHHHHHHHHHhhhchH
Confidence 34443 56788888887765443321111 111 112234677889999999998887654
No 71
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.99 E-value=3 Score=52.83 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 524 GALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEK 582 (1154)
Q Consensus 524 ~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~ 582 (1154)
.+|......+|+++.-|++.++ +|......++.+++++++++.+++..
T Consensus 173 ~hL~velAdle~kir~LrqElE-----------EK~enll~lr~eLddleae~~klrqe 220 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELE-----------EKFENLLRLRNELDDLEAEISKLRQE 220 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667777766666555 23344445566666666666665543
No 72
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.93 E-value=0.86 Score=56.97 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDE 634 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~e 634 (1154)
...+..+......++.++..++..+.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~ 324 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDE 324 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555543
No 73
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.91 E-value=2.6 Score=43.85 Aligned_cols=79 Identities=23% Similarity=0.240 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEE-------TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e-------~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
.++..|..++.++..+.+.+..+..++-..... .+.........+.+....+..+...+.+...-..+|+.|.
T Consensus 102 ~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~ 181 (193)
T PF14662_consen 102 AEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEK 181 (193)
T ss_pred HHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444444444332222 2222333333344445555666666677777777777777
Q ss_pred HHHHHh
Q 001112 682 QILRQQ 687 (1154)
Q Consensus 682 ~~l~qq 687 (1154)
..|+++
T Consensus 182 s~LEeq 187 (193)
T PF14662_consen 182 SRLEEQ 187 (193)
T ss_pred HHHHHH
Confidence 777765
No 74
>PRK03918 chromosome segregation protein; Provisional
Probab=95.90 E-value=0.72 Score=61.03 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
..+..++..+..+..++..++..+..++.++..+
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444333
No 75
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.88 E-value=6.3 Score=47.91 Aligned_cols=13 Identities=54% Similarity=0.516 Sum_probs=10.3
Q ss_pred CcccccccccCCc
Q 001112 66 KSLIGVLDIYGFE 78 (1154)
Q Consensus 66 ~~~IgvLDi~GFE 78 (1154)
.+.+|+|||-|=+
T Consensus 9 ~sl~~~lDiq~~~ 21 (961)
T KOG4673|consen 9 VSLGGFLDIQGAV 21 (961)
T ss_pred hhhcccccccccc
Confidence 4678999998865
No 76
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.83 E-value=13 Score=51.29 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001112 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
.++.+.+.++..++.++..++..++.++++..
T Consensus 449 aklee~e~qL~elE~kL~~lea~leql~~~~~ 480 (1486)
T PRK04863 449 AKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444433
No 77
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.78 E-value=0.008 Score=41.64 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 001112 423 EASCLRIQRDLRMYLAKKAYK 443 (1154)
Q Consensus 423 ~~AAi~IQ~~~R~~~~Rk~y~ 443 (1154)
..||+.||++||||.+|+.|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 457888888888888888873
No 78
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.73 E-value=1.6 Score=54.39 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
..+......+..|++++.+++...-.+.....++...+.-......++.+++.+++.++..+++.+....+|...|++
T Consensus 153 ~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 153 ATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344455555666666666666554444333333322222222222334444455555555555555555555555444
No 79
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.70 E-value=2.8 Score=51.51 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
....+++.+...|..++.+-++.+..++++++.++|
T Consensus 270 E~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 270 EKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333344444455666666666667777777777666
No 80
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.68 E-value=14 Score=50.50 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=16.6
Q ss_pred HHhccccCCCCCCCCCHH-HHHHHHHhhh
Q 001112 1071 ICTLYWDDNYNTRSVSPN-VISSMRILMT 1098 (1154)
Q Consensus 1071 il~~Y~~d~~e~~~v~~~-~i~~v~~~~~ 1098 (1154)
....|+..+.. ..||++ ++..|+.++.
T Consensus 1054 ~~~~w~~~~~~-~~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1054 EYELWRSSDGS-RELPSEEYVNALRELLD 1081 (1201)
T ss_pred HHHHHhcccCc-ccCCCHHHHHHHHHHHH
Confidence 44455433333 358888 8888877654
No 81
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.65 E-value=2.6 Score=52.64 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=19.1
Q ss_pred HHHHHHHhHHhhcccccCCHHH-HHhccCcCCCHHHHHHHH
Q 001112 1033 KHIRQAVGFLVIHQKYRISYDE-ITNDLCPILSVQQLYRIC 1072 (1154)
Q Consensus 1033 ~~l~Qa~~lLq~~kk~~~~~~~-i~~~~c~~Ls~~Ql~kil 1072 (1154)
..|+.|++-++.. ....++ |++.-=-+=+++||..-.
T Consensus 850 tvLVeaAdkvV~~---~gkfEeLIVas~EIAAsTaQLVaAS 887 (980)
T KOG0980|consen 850 TVLVEAADKVVTG---TGKFEELIVASQEIAASTAQLVAAS 887 (980)
T ss_pred HHHHHHhhhHhcC---CCCcHHHHHhhhHHHHHHHHHHHHH
Confidence 3566777777665 222333 332111255677777544
No 82
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.64 E-value=0.92 Score=54.71 Aligned_cols=76 Identities=28% Similarity=0.377 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
...+++.+..+|+.++++++.++.+.++...............+.+++.++..++..++.+++++..|+.|+..++
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLR 182 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4455666666666666666666666655555555555444445555555554444444444444444444444443
No 83
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.62 E-value=4.5 Score=44.44 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
.+.+....+.+++|+++|..|+.|.+.|+.+.
T Consensus 192 ~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 192 QKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556777788888888888888888887754
No 84
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.60 E-value=15 Score=50.24 Aligned_cols=20 Identities=5% Similarity=0.263 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 001112 666 AMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 666 ~~~~Le~~i~~Le~e~~~l~ 685 (1154)
++..++.++.+++.+...+.
T Consensus 512 ~l~~~~~~~~~~~~~~~~l~ 531 (1201)
T PF12128_consen 512 ELRQARRELEELRAQIAELQ 531 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444333
No 85
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.48 E-value=3.1 Score=48.40 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 001112 664 KTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 664 ~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+.+.-.|+++.++-+.++-..||
T Consensus 491 EqefLslqeEfQk~ekenl~ERq 513 (527)
T PF15066_consen 491 EQEFLSLQEEFQKHEKENLEERQ 513 (527)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444444445554444444444
No 86
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.42 E-value=4 Score=45.45 Aligned_cols=52 Identities=33% Similarity=0.305 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 635 le~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.|+.+++...+.+-+..+++..++...-+.+++..|++-+..++...+.++.
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 4445555666666666666677777777888999999999999888877765
No 87
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.42 E-value=12 Score=48.11 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 001112 665 TAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 665 ~~~~~Le~~i~~Le~e~~~ 683 (1154)
..+.+...+|..|+.+++.
T Consensus 1724 ~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1724 QALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 3333444444444444433
No 88
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.37 E-value=3.7 Score=43.53 Aligned_cols=27 Identities=41% Similarity=0.447 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEK 637 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1154)
.++|......++..+++...++..++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 89
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.35 E-value=4.2 Score=49.32 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA----ESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~----e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
..|...+...+..|+.++.++|.....+++..+++.-++.+. +..+...+.++.+|++++..+-.|++.|
T Consensus 295 rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 295 REELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKL 368 (546)
T ss_pred HHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555555555555444444332 4444556666666666666666666555
No 90
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.29 E-value=3.5 Score=51.57 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=5.2
Q ss_pred hhhhHHHHhcCC
Q 001112 295 VMEAIRISCAGY 306 (1154)
Q Consensus 295 vle~iri~~~gy 306 (1154)
++++|...-.|-
T Consensus 43 ll~aI~~~l~G~ 54 (562)
T PHA02562 43 MLEALTFALFGK 54 (562)
T ss_pred HHHHHHHHHcCC
Confidence 444444444443
No 91
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.29 E-value=7.5 Score=48.83 Aligned_cols=12 Identities=33% Similarity=0.207 Sum_probs=8.0
Q ss_pred cCcCCCHHHHHH
Q 001112 1059 LCPILSVQQLYR 1070 (1154)
Q Consensus 1059 ~c~~Ls~~Ql~k 1070 (1154)
.++.||+.||.+
T Consensus 933 DFS~ls~h~~K~ 944 (980)
T KOG0980|consen 933 DFSSLSLHQLKT 944 (980)
T ss_pred ccccccHHHHHH
Confidence 356777777754
No 92
>PRK03918 chromosome segregation protein; Provisional
Probab=95.12 E-value=1.7 Score=57.59 Aligned_cols=76 Identities=13% Similarity=0.225 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETE-----KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele-----~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
+..+..+...++.++.+++.++.++. .....++.....+..++.++...+..++.++..++..+..++.++..++
T Consensus 628 l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l~ 707 (880)
T PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444 3444444555555555555556666666666666666666655554443
Q ss_pred H
Q 001112 686 Q 686 (1154)
Q Consensus 686 q 686 (1154)
+
T Consensus 708 ~ 708 (880)
T PRK03918 708 K 708 (880)
T ss_pred H
Confidence 3
No 93
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.07 E-value=5.1 Score=45.09 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD-------METENQI 683 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~-------Le~e~~~ 683 (1154)
+..-..+....++++..|..++-+++.+....-.+.+++...+......-..|..++.+|+++-.+ .++|+..
T Consensus 222 La~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 222 LARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555666666666667777777666677777777666655556666666666665555 4555555
Q ss_pred HHH
Q 001112 684 LRQ 686 (1154)
Q Consensus 684 l~q 686 (1154)
+|+
T Consensus 302 lR~ 304 (306)
T PF04849_consen 302 LRK 304 (306)
T ss_pred hhC
Confidence 543
No 94
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.04 E-value=3.4 Score=52.30 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=11.6
Q ss_pred cccCCcccCCCchhHH
Q 001112 73 DIYGFESFKTNSFEQF 88 (1154)
Q Consensus 73 Di~GFE~f~~Nsfeql 88 (1154)
|+-|=+.+..|+-+++
T Consensus 30 ~~lg~~p~s~ng~e~i 45 (1195)
T KOG4643|consen 30 DMLGSTPSSSNGEEAI 45 (1195)
T ss_pred hhhccCccccchHHHH
Confidence 4667777888887765
No 95
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.04 E-value=2.4 Score=42.28 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 001112 615 TSENEKLKTLVSSLEKKIDETE 636 (1154)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele 636 (1154)
.+++..|...+...+.++.+++
T Consensus 79 ~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 79 RSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 96
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.02 E-value=7.9 Score=53.49 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001112 522 ETGALQAAKNKLEKQVEELT 541 (1154)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~ 541 (1154)
+...++.....++.++.+|+
T Consensus 844 ~~e~l~~e~e~~~~eI~~Lq 863 (1311)
T TIGR00606 844 KIELNRKLIQDQQEQIQHLK 863 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 97
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.02 E-value=5.2 Score=41.55 Aligned_cols=72 Identities=26% Similarity=0.312 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA-------ESKIVQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~-------e~~~~~l~~~~~~Le~~i~~Le~e 680 (1154)
.+...|..+...+...+..+....+.+..+....+.....+..++.++ +..+..|++++.+|+..+...+.+
T Consensus 109 s~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 109 SQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 344445555555555555555444444444444444444444444333 344444444444444444444444
No 98
>PRK09039 hypothetical protein; Validated
Probab=94.97 E-value=0.69 Score=53.71 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEK 582 (1154)
Q Consensus 525 ~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~ 582 (1154)
-|.+...+++.++.+++.++.. -.++..-.......++.++.+++.++..++..
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~----L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~ 96 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAE----LADLLSLERQGNQDLQDSVANLRASLSAAEAE 96 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888777763 11112222344456666677776666655443
No 99
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.94 E-value=14 Score=47.77 Aligned_cols=33 Identities=24% Similarity=0.542 Sum_probs=22.4
Q ss_pred ccc-cCcccccccccccccCCCcchhhhcCccccccc
Q 001112 1117 IPF-SVDDLSNSLQEKDFLDVKAAEELLENPAFEFLY 1152 (1154)
Q Consensus 1117 ~Pf-~~~~~~~~~~~~~~~~i~~p~~l~~~~~~~~~~ 1152 (1154)
-|| .+++|...+|+.++.-| .+-++ +|+|+|+.
T Consensus 1074 aPFfvlDEiDAALDntNi~kv--asyIr-~~~~Q~Iv 1107 (1141)
T KOG0018|consen 1074 APFFVLDEIDAALDNTNIGKV--ASYIR-SSNFQFIV 1107 (1141)
T ss_pred CCceehhhHHHHhhhccHHHH--HHHHh-cCCceEEE
Confidence 454 56667777777776654 56666 88899864
No 100
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.93 E-value=5 Score=45.90 Aligned_cols=15 Identities=7% Similarity=0.357 Sum_probs=9.6
Q ss_pred HHHhHHHHHHHHHHh
Q 001112 673 KVSDMETENQILRQQ 687 (1154)
Q Consensus 673 ~i~~Le~e~~~l~qq 687 (1154)
++..|+.+...+++.
T Consensus 272 Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 272 EIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666663
No 101
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.91 E-value=6.8 Score=43.17 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001112 562 NAKLQSALQEMQLQFKE 578 (1154)
Q Consensus 562 ~~~L~~~l~~le~~l~~ 578 (1154)
.+++++++.+++..+.+
T Consensus 82 ik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 82 IKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 102
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.89 E-value=6 Score=44.44 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001112 565 LQSALQEMQLQFKES 579 (1154)
Q Consensus 565 L~~~l~~le~~l~~~ 579 (1154)
|-++++.++.+.+.+
T Consensus 82 LlKkl~~l~keKe~L 96 (310)
T PF09755_consen 82 LLKKLQQLKKEKETL 96 (310)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 103
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.88 E-value=12 Score=45.10 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001112 520 ARETGALQAAKNKLEKQV 537 (1154)
Q Consensus 520 a~~~~~L~~~~~~LE~kv 537 (1154)
+.+++.|+....+|.+++
T Consensus 307 EeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 104
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.81 E-value=0.37 Score=62.79 Aligned_cols=114 Identities=27% Similarity=0.289 Sum_probs=82.7
Q ss_pred HHHHhhhcccchhhh----ch-hhhHHHHHHHHHhhhhhhhhhh----cc-chhhhhhHHHHHHHHHH----HHHHHHhh
Q 001112 381 IQRKVRSYLSRKNYI----ML-RRSAIHIQAACRGQLARTVYES----MR-REASCLRIQRDLRMYLA----KKAYKDMC 446 (1154)
Q Consensus 381 IQ~~~R~~~~Rk~y~----~~-r~a~i~IQ~~~Rg~lar~~~~~----~r-~~~AAi~IQ~~~R~~~~----Rk~y~~~r 446 (1154)
.|..+|++..|..-- .. ..-...+|+-.||+..|..++. ++ ..-....||..|||+.. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 566667666655311 11 2223445999999988776543 22 34578899999999984 33445667
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHhhh
Q 001112 447 FSAVCIQTGMRGMAARNELRFRRQ-----TRASILIQSHCRKYLARLHYMKLK 494 (1154)
Q Consensus 447 ~a~i~iQs~~Rg~~aR~~~~~~~~-----~~aa~~IQ~~~R~~~~r~~~~~~~ 494 (1154)
+.++.+|+..||+.+|+.+....+ ..+.+.||++.|....|..|+.+.
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 789999999999999988755433 467889999999999999998874
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.75 E-value=3.8 Score=47.35 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhHHH
Q 001112 665 TAMHRLEEKVSDMET 679 (1154)
Q Consensus 665 ~~~~~Le~~i~~Le~ 679 (1154)
.++.+|+.++..|+.
T Consensus 276 ~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 276 SEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555444
No 106
>PTZ00014 myosin-A; Provisional
Probab=94.72 E-value=0.037 Score=70.83 Aligned_cols=40 Identities=18% Similarity=0.034 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHH
Q 001112 425 SCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNE 464 (1154)
Q Consensus 425 AAi~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~~aR~~ 464 (1154)
++..||++||+|.+|+.|.+.+.+++.||+.+||++++++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888888888888888777777777777777766643
No 107
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.68 E-value=1.6 Score=47.30 Aligned_cols=71 Identities=20% Similarity=0.160 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 001112 619 EKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1154)
Q Consensus 619 ~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~~ 689 (1154)
..|+.+...|.+..+.+++...++..+..-...++.-++.++....+.++.|+.++..++.|++..++.+.
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444455555666666666666566667777888888888889999999999999988877554
No 108
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.50 E-value=9.5 Score=42.65 Aligned_cols=79 Identities=24% Similarity=0.289 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA-----------ESKIVQLKTAMHRLEEKVSD 676 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~-----------e~~~~~l~~~~~~Le~~i~~ 676 (1154)
+..+..+..|+..++-+++++..+..|.+++...+.++..+.......+ -.-++.-+.-+..|+.++.+
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777666666666655554433332221 11224455666677777777
Q ss_pred HHHHHHHHHH
Q 001112 677 METENQILRQ 686 (1154)
Q Consensus 677 Le~e~~~l~q 686 (1154)
|--|..++-|
T Consensus 213 Lm~EirnLLQ 222 (401)
T PF06785_consen 213 LMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHH
Confidence 7667666655
No 109
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.50 E-value=2.4 Score=42.16 Aligned_cols=30 Identities=27% Similarity=0.560 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
..-..+++++.+++.++.+|..+|..|-+|
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567778888888888888888877664
No 110
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.50 E-value=8.2 Score=41.38 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 662 QLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.+-..+.+|+++..+|..|+..-.+|
T Consensus 161 ~llesvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 161 VLLESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667888888888999998876544
No 111
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=5.1 Score=47.42 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 001112 665 TAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 665 ~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
-+.+.|+-+|.+|+++.+-+.++
T Consensus 194 VEyEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 194 VEYEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555777777777777665
No 112
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.31 E-value=12 Score=47.85 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
.++...+.++.+++.++..++.++..+++++..+
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444333
No 113
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=94.31 E-value=0.21 Score=57.21 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=73.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHHHhHhhhcc-CCCCCCchhHHHhhchHHHHHHHhhcc
Q 001112 943 SASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLR-RECCTFSNGEYVKAGLAELELWCCQAK 1021 (1154)
Q Consensus 943 ~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~~~ 1021 (1154)
.++..+.+++.+|..++... ...+|+.+..-++...|.+|+..+.+-|+.. -+..|-.--.++...|..+|.++.+-.
T Consensus 176 ~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~ 254 (311)
T PF04091_consen 176 EPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLP 254 (311)
T ss_dssp S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-S
T ss_pred CCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCc
Confidence 35567999999999988554 5789999999999999999999999988754 244455555788899999999999861
Q ss_pred c--ccccchHHHhHHHHHHHhHHhhcccccCCHHHHHhccCcCCCHHHHHHHHhccc
Q 001112 1022 E--EYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYW 1076 (1154)
Q Consensus 1022 ~--~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ls~~Ql~kil~~Y~ 1076 (1154)
. .-.+.....|..++|.++||....-..--...+...-.+.++|..+..||..|+
T Consensus 255 ~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 255 VPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SSS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 0 124566789999999999999874333311146555678999999999988774
No 114
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.24 E-value=9.4 Score=46.74 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 001112 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1154)
Q Consensus 642 ~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~~ 689 (1154)
.+-+.....+++.-++.++..|.++++.-...+..|+.+|..|+++..
T Consensus 578 ~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 578 IECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444445556666777888888888888888889999999988653
No 115
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.17 E-value=12 Score=43.44 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 663 l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+++.+..++-+.+|..++..++.
T Consensus 365 fq~ekeatqELieelrkelehlr~ 388 (502)
T KOG0982|consen 365 FQEEKEATQELIEELRKELEHLRR 388 (502)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433
No 116
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.05 E-value=14 Score=42.32 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 610 VVEELTSENEKLKTLVSSLEK----KIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~----~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
+.+.|..+...|++..++++. .+..+..++.+...+.....+.+.+.+.++..+...++...++..++++++..++
T Consensus 180 ~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 180 RKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443322 3334444444444444444445555555555555555555555555555555554
Q ss_pred H
Q 001112 686 Q 686 (1154)
Q Consensus 686 q 686 (1154)
+
T Consensus 260 ~ 260 (312)
T smart00787 260 K 260 (312)
T ss_pred H
Confidence 4
No 117
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.01 E-value=2.5 Score=47.50 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001112 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le 678 (1154)
.|..++..++..+..+-.+.+++...+...+..-..+..++.+++.+.......+.+.++++..++
T Consensus 238 ~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333333343333333333334444455555555555555555555555543
No 118
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.95 E-value=22 Score=44.21 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=4.0
Q ss_pred HHHHHHh
Q 001112 1012 ELELWCC 1018 (1154)
Q Consensus 1012 ~Le~W~~ 1018 (1154)
.+|+|+.
T Consensus 954 tIEdwil 960 (1265)
T KOG0976|consen 954 TIEDWIL 960 (1265)
T ss_pred cccccee
Confidence 4566653
No 119
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.95 E-value=6.3 Score=39.16 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 646 SEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1154)
Q Consensus 646 ~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~ 675 (1154)
...+...+.+++..+..|..++.-|-++|+
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444555555555555555544443
No 120
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.90 E-value=4.1 Score=47.95 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+.....++.+|..++-++++++..+..+.+++..........-.+++....+++.+..+..+.+.+-++|++.|+.
T Consensus 228 l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 228 LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455555555555555555544444444433333333333344444555566666666666666777776665
No 121
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=93.87 E-value=0.061 Score=37.23 Aligned_cols=20 Identities=60% Similarity=0.871 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001112 471 TRASILIQSHCRKYLARLHY 490 (1154)
Q Consensus 471 ~~aa~~IQ~~~R~~~~r~~~ 490 (1154)
..+|+.||++||+|.+|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35677788888888877776
No 122
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.79 E-value=15 Score=41.87 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~ 679 (1154)
++..++|....+........++.....++.....+.......+.+-+.++..++.+...|+.++..|+.
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544444444443333333333333344444444444445444444443
No 123
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.77 E-value=11 Score=42.15 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 001112 662 QLKTAMHRLEEKVS 675 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~ 675 (1154)
.++.++.+++..+.
T Consensus 232 ~~~~elre~~k~ik 245 (294)
T COG1340 232 NLQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 124
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.70 E-value=15 Score=42.33 Aligned_cols=11 Identities=36% Similarity=0.365 Sum_probs=6.3
Q ss_pred hhHHHHHHHHH
Q 001112 472 RASILIQSHCR 482 (1154)
Q Consensus 472 ~aa~~IQ~~~R 482 (1154)
.|.+.||+.+-
T Consensus 85 ~Asv~IQarae 95 (552)
T KOG2129|consen 85 LASVEIQARAE 95 (552)
T ss_pred hhhhHHhhccc
Confidence 35666776443
No 125
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.62 E-value=10 Score=48.50 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 559 TQENAKLQSALQEMQLQFKESKEKLMKE 586 (1154)
Q Consensus 559 ~~e~~~L~~~l~~le~~l~~~~~~~~~e 586 (1154)
.++...|+.+++.|...++.....+.+.
T Consensus 335 e~~~~~Lqsdve~Lr~rle~k~~~l~kk 362 (775)
T PF10174_consen 335 EQEAEMLQSDVEALRFRLEEKNSQLEKK 362 (775)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444333
No 126
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=93.26 E-value=11 Score=46.26 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=14.3
Q ss_pred CCCCCCchhHHHhhchHHHHHHHhhccc
Q 001112 995 RECCTFSNGEYVKAGLAELELWCCQAKE 1022 (1154)
Q Consensus 995 ~~~cs~s~G~qIr~nls~Le~W~~~~~~ 1022 (1154)
++..-|+| .++-.|+.+-|+
T Consensus 756 ~DvlVWsN--------~RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSN--------DRVIRWVQSIGL 775 (916)
T ss_pred ccceEeec--------HHHHHHHHhcCH
Confidence 56677888 456678888774
No 127
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.25 E-value=16 Score=40.40 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 521 RETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKE 586 (1154)
Q Consensus 521 ~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e 586 (1154)
.....+.+.+..+++++..|...++.-.... .....++.+++.++..++.++..++....+.
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~----~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKI----DELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544433111110 0344566677777777777777777665433
No 128
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=30 Score=43.41 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
...+.++...+...++.......++......+....++..+++++.+..+.....+++.+..+...+++|+..|+.+.
T Consensus 540 ~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 540 ESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKL 617 (698)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555555566666666666666666666666666666666543
No 129
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.12 E-value=14 Score=39.48 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE-AESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~-~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
..++++...|+-+.+.|+.+...++....++..........+.. ..-+..-|++.+..|.+.++..+.++...
T Consensus 96 ~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 96 KELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333333322222211 12223446666777766666666666543
No 130
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.06 E-value=20 Score=40.92 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 660 IVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
++.|-.++.=|.+++..+++|...+++.
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777888888888888777763
No 131
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.98 E-value=14 Score=39.16 Aligned_cols=28 Identities=43% Similarity=0.580 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001112 618 NEKLKTLVSSLEKKIDETEKKFEETSKI 645 (1154)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele~~~~e~~~~ 645 (1154)
..+|...++.++..+.+.++++..+++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666655555555543
No 132
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.85 E-value=8.9 Score=47.74 Aligned_cols=16 Identities=56% Similarity=0.931 Sum_probs=10.1
Q ss_pred eeCcceEEeccchhhhcc
Q 001112 188 HYAGDVTYQTELFLDKNK 205 (1154)
Q Consensus 188 H~ag~V~Y~~~~fl~kN~ 205 (1154)
+|.|++-|+. ||=-|-
T Consensus 79 Gy~~digyq~--fLYp~e 94 (594)
T PF05667_consen 79 GYRGDIGYQT--FLYPNE 94 (594)
T ss_pred CCCCCCcchh--hccCCh
Confidence 4788888863 664333
No 133
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.77 E-value=43 Score=44.10 Aligned_cols=72 Identities=19% Similarity=0.330 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES--KIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~--~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
+...+...++..+..|+..+.+....+..++.+..+......+.++ .-..++.+++.++++++.+..|.+.+
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666655555554444444433333333333332 33567777777777777777777766
No 134
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.76 E-value=13 Score=47.38 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
++++..+-..+=.+-+.|+..+..+++++...++
T Consensus 462 ~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 462 LDELQDKRKELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444445566666667776665554
No 135
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.72 E-value=16 Score=45.69 Aligned_cols=12 Identities=8% Similarity=0.138 Sum_probs=7.0
Q ss_pred cccceeeeeccc
Q 001112 351 IGKTKVFLRAGQ 362 (1154)
Q Consensus 351 iG~TkVFlr~~~ 362 (1154)
.|.|...|..+.
T Consensus 59 ~Ges~~~f~~w~ 70 (569)
T PRK04778 59 TGQSEEKFEEWR 70 (569)
T ss_pred CcccHHHHHHHH
Confidence 566666665443
No 136
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.30 E-value=1.1 Score=47.85 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
++..+..+.......+..++..+..++.++..++.+..+..+.++.+...+..++-+...+++++.+|+.||..|-+
T Consensus 103 ~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 103 ELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555555555555555555566666666777777777777777777776643
No 137
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.30 E-value=19 Score=43.08 Aligned_cols=24 Identities=4% Similarity=0.207 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 663 l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
...++..++.++..++.++..++.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544
No 138
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.28 E-value=49 Score=43.59 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=22.1
Q ss_pred CceEEEeeCcceEEeccchhhhc-----chhhhHHHHHHHhh
Q 001112 182 SDFTICHYAGDVTYQTELFLDKN-----KDYVVAEHQALLSA 218 (1154)
Q Consensus 182 ~~F~I~H~ag~V~Y~~~~fl~kN-----~d~~~~~~~~ll~~ 218 (1154)
.+..+.-|+..+.-+.+|-+.-+ .|+++|+++..+..
T Consensus 212 GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~ 253 (1317)
T KOG0612|consen 212 GHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGD 253 (1317)
T ss_pred CcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcC
Confidence 34555555555555555555444 47888888765554
No 139
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=92.20 E-value=3.6 Score=50.53 Aligned_cols=125 Identities=17% Similarity=0.210 Sum_probs=85.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHHHhHhhhccCCCCCCchhHHHhhchHHHHHHHhhccc
Q 001112 943 SASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKE 1022 (1154)
Q Consensus 943 ~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~ 1022 (1154)
.++++....+..|...+..|+.. +++.....+...+..-|+..+|+.++++. -.|..-|.|+.+=+.. |+.--+
T Consensus 352 ~~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~---L~~~~~- 425 (494)
T PF04437_consen 352 SPSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRA---LFSVFS- 425 (494)
T ss_dssp ---GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHH---HHTTS--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHH---HHHHHH-
Confidence 34567889999999999999999 99999999999999999999999999976 5666667777766644 444333
Q ss_pred ccccchHHHhHHHHHHHhHHhhcccccCCH--------------HHHHhccC-cCCCHHHHHHHHh
Q 001112 1023 EYAGSSWDELKHIRQAVGFLVIHQKYRISY--------------DEITNDLC-PILSVQQLYRICT 1073 (1154)
Q Consensus 1023 ~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~--------------~~i~~~~c-~~Ls~~Ql~kil~ 1073 (1154)
.+....-.++..|.+++.||-++..+.... .+++.+.. ..||+.++.+||.
T Consensus 426 ~~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 426 QYTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp -TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 244455579999999999999986543322 12222221 4788888887774
No 140
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.19 E-value=38 Score=42.08 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 663 l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
++.+-.+|.+.+..|+++-+.|..
T Consensus 240 we~Er~~L~~tVq~L~edR~~L~~ 263 (739)
T PF07111_consen 240 WEPEREELLETVQHLQEDRDALQA 263 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666665554
No 141
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.15 E-value=15 Score=47.04 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 671 (1154)
Q Consensus 634 ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le 671 (1154)
++.+....++.+...+..+++..++....|+-++.-+.
T Consensus 124 ~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~ 161 (769)
T PF05911_consen 124 ELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLS 161 (769)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444443333
No 142
>PRK01156 chromosome segregation protein; Provisional
Probab=92.11 E-value=53 Score=43.64 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 654 ~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
++...++..+++++..|+.++.+++.++..++.
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666666555553
No 143
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.10 E-value=13 Score=47.55 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 612 EELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e 641 (1154)
.++.+|...++..+..+...++++..+.+.
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666655555444
No 144
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.01 E-value=25 Score=44.48 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKI---DETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l---~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+.+|+.|+-.|+.++..|+..- +.++..+..++.+..-+..+++++..-..-.++++++--+.++.=++....||+
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~Lrk 177 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRK 177 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777666666442 244445555555555566666655443333333333332333333333344444
No 145
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.82 E-value=71 Score=44.43 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001112 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEK 596 (1154)
Q Consensus 525 ~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee 596 (1154)
+|......|..+...++..+..-+.....+++........++.++.+|+.++.++...++.+...++.+...
T Consensus 763 rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~ 834 (1822)
T KOG4674|consen 763 RLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNS 834 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666666666666655445555555555566666777888888888888887777666666655543
No 146
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.81 E-value=28 Score=39.85 Aligned_cols=80 Identities=13% Similarity=0.254 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
-.++.+++.....+-.+.+...+.+++.+.+++..++++......+-+.....+..+-.+...+..++..++..++.|+.
T Consensus 221 Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 221 YSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666677777777777777777777777776666666666655655555555666665555555543
No 147
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.80 E-value=22 Score=44.36 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001112 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA 653 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l 653 (1154)
....|..+++-++++...+++.++-+++..+++..-+.-.+
T Consensus 491 ~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itl 531 (861)
T PF15254_consen 491 QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITL 531 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHH
Confidence 44555666666666666666666666666666655444333
No 148
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.78 E-value=26 Score=48.56 Aligned_cols=19 Identities=5% Similarity=-0.092 Sum_probs=9.1
Q ss_pred hhHHHhhchHHHHHHHhhc
Q 001112 1002 NGEYVKAGLAELELWCCQA 1020 (1154)
Q Consensus 1002 ~G~qIr~nls~Le~W~~~~ 1020 (1154)
-|-.|+--|..-++|+...
T Consensus 1118 v~~~l~~ri~~A~~~v~~m 1136 (1353)
T TIGR02680 1118 IARHLQSLILAAERQVAAM 1136 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555443
No 149
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.66 E-value=6.1 Score=41.82 Aligned_cols=17 Identities=29% Similarity=0.726 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhHH
Q 001112 662 QLKTAMHRLEEKVSDME 678 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le 678 (1154)
+++.....+.+.+.+++
T Consensus 169 ~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 169 RLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444433333
No 150
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.50 E-value=2.3 Score=45.23 Aligned_cols=69 Identities=22% Similarity=0.194 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~ 676 (1154)
...+..|..++..|+..+.+++..+.+.++.+..+..+...+.-.+..++.++..++.+..+|=++...
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777776666666666666666666666666666666666666555444
No 151
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=91.50 E-value=4.6 Score=48.53 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=15.6
Q ss_pred chhHHHhhchHHHHHHHhhccc
Q 001112 1001 SNGEYVKAGLAELELWCCQAKE 1022 (1154)
Q Consensus 1001 s~G~qIr~nls~Le~W~~~~~~ 1022 (1154)
+..+-++.-=+++-+|+++-++
T Consensus 707 sed~Vv~WTnhrvmeWLrsiDL 728 (861)
T KOG1899|consen 707 SEDVVVRWTNHRVMEWLRSIDL 728 (861)
T ss_pred ChhHHHHhhhHHHHHHHHhccH
Confidence 3444566666889999998663
No 152
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=3.8 Score=49.54 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE---RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~---~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
..+++.|+.+++.|+..+++++..++.++.++++...+... ...++...+..+..|+.++.+-...++.|+.++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777777776666666666666655444332 122344556677778888888888888888888777
Q ss_pred HH
Q 001112 685 RQ 686 (1154)
Q Consensus 685 ~q 686 (1154)
++
T Consensus 508 ~k 509 (652)
T COG2433 508 RK 509 (652)
T ss_pred HH
Confidence 75
No 153
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.43 E-value=20 Score=37.44 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS 646 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~ 646 (1154)
...+..+...++.++.+.+..+..+++.+..+..+.
T Consensus 86 l~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 86 LHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333333
No 154
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.27 E-value=18 Score=41.95 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=8.5
Q ss_pred HHHhHHHHHHHHHHhhc
Q 001112 673 KVSDMETENQILRQQSL 689 (1154)
Q Consensus 673 ~i~~Le~e~~~l~qq~~ 689 (1154)
+..+|+.+.+.|||.+.
T Consensus 404 Re~eleqevkrLrq~nr 420 (502)
T KOG0982|consen 404 REIELEQEVKRLRQPNR 420 (502)
T ss_pred HHHHHHHHHHHhccccc
Confidence 44445555555555443
No 155
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.09 E-value=50 Score=41.36 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001112 569 LQEMQLQFKESKEKL 583 (1154)
Q Consensus 569 l~~le~~l~~~~~~~ 583 (1154)
++.++.+++.+-..+
T Consensus 284 ~~~i~~~Id~Lyd~l 298 (569)
T PRK04778 284 NEEIQERIDQLYDIL 298 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 156
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.05 E-value=2.7 Score=44.96 Aligned_cols=76 Identities=11% Similarity=0.120 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
...+..++.++++++.+++++..+..+ ...++.....+....+.+++++..+|++++..++.++..++.+++.++.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQ---RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666555555543321 2222222222233333344444455555555555555555555555544
No 157
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.04 E-value=52 Score=41.38 Aligned_cols=11 Identities=45% Similarity=0.715 Sum_probs=5.9
Q ss_pred ccCCCcccccC
Q 001112 1111 LDDNSSIPFSV 1121 (1154)
Q Consensus 1111 lD~~~~~Pf~~ 1121 (1154)
|-.+-++||-+
T Consensus 594 L~~~pcipffy 604 (617)
T PF15070_consen 594 LGSNPCIPFFY 604 (617)
T ss_pred CCCCCccccee
Confidence 44455666643
No 158
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.97 E-value=84 Score=43.69 Aligned_cols=19 Identities=5% Similarity=-0.155 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 001112 428 RIQRDLRMYLAKKAYKDMC 446 (1154)
Q Consensus 428 ~IQ~~~R~~~~Rk~y~~~r 446 (1154)
+-..-|=|..+|..|+..+
T Consensus 725 k~~a~~IG~~aR~~~R~~r 743 (1353)
T TIGR02680 725 KPAAEYIGAAARERARLRR 743 (1353)
T ss_pred CcchhHhhHHHHHHHHHHH
Confidence 4445677777777776544
No 159
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.93 E-value=24 Score=38.24 Aligned_cols=76 Identities=25% Similarity=0.364 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---------HHHHHHHHHHHHHHHhH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE--AESKI---------VQLKTAMHRLEEKVSDM 677 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~--~e~~~---------~~l~~~~~~Le~~i~~L 677 (1154)
..+..+......+...++.|+..+.+++.++.+++.....+..+... ++.++ ......+.++++++..+
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ 177 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEM 177 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555544444433222 12221 23344556666666666
Q ss_pred HHHHHHH
Q 001112 678 ETENQIL 684 (1154)
Q Consensus 678 e~e~~~l 684 (1154)
+.+....
T Consensus 178 ea~a~a~ 184 (221)
T PF04012_consen 178 EARAEAS 184 (221)
T ss_pred HHHHHHH
Confidence 5555443
No 160
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.38 E-value=33 Score=44.21 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHHHH-HHHhCCCCHHHHHH
Q 001112 947 HWQSIIDSLNTLLS-TLKQNFVPPVLVQK 974 (1154)
Q Consensus 947 ~~~~il~~L~~~~~-~l~~~~v~~~l~~Q 974 (1154)
+++.+-+-+..=.+ .++..+|++.+++|
T Consensus 836 t~~eld~~I~~e~t~~~~~~n~ne~~vq~ 864 (1072)
T KOG0979|consen 836 TMDELDQAITDELTRALKFENVNEDAVQQ 864 (1072)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 34444444443333 56667777775554
No 161
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.34 E-value=32 Score=37.76 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 662 QLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.|++....-=++-.+|+.|+..|+-+
T Consensus 166 ~L~ekynkeveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 166 ELQEKYNKEVEERKRLEAEVKALQAK 191 (307)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 33333333333445566676666643
No 162
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.34 E-value=95 Score=43.27 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 520 ARETGALQAAKNKLEKQVEELTWRLQ 545 (1154)
Q Consensus 520 a~~~~~L~~~~~~LE~kv~el~~~l~ 545 (1154)
...++.++.....|+.+-..++.-+.
T Consensus 695 ~~~ie~~K~e~~tL~er~~~l~~~i~ 720 (1822)
T KOG4674|consen 695 EKNLELTKEEVETLEERNKNLQSTIS 720 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443
No 163
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.15 E-value=30 Score=44.25 Aligned_cols=17 Identities=6% Similarity=-0.154 Sum_probs=11.5
Q ss_pred CcCCCHHHHHHHHhccc
Q 001112 1060 CPILSVQQLYRICTLYW 1076 (1154)
Q Consensus 1060 c~~Ls~~Ql~kil~~Y~ 1076 (1154)
.+..++-||.+-|...-
T Consensus 946 y~~~~~~el~kkL~~~n 962 (1200)
T KOG0964|consen 946 YQDKKSKELMKKLHRCN 962 (1200)
T ss_pred hccCCHHHHHHHHHHHH
Confidence 67778888777665443
No 164
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.11 E-value=4.6 Score=46.34 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 655 ~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
..+.....++++...++.++.....+++.|++-
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444556666666666666667777777663
No 165
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.06 E-value=2.6 Score=44.14 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL 650 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~ 650 (1154)
+.+++.+++..|-.++++++.+.++..+++.+++.++..+.
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444444444444444444333
No 166
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.99 E-value=53 Score=42.49 Aligned_cols=10 Identities=10% Similarity=0.082 Sum_probs=4.4
Q ss_pred hhcHHHHHHH
Q 001112 750 HENVDALINC 759 (1154)
Q Consensus 750 ~e~~~~li~~ 759 (1154)
.+|.+.+.+.
T Consensus 486 ~eD~~lf~~~ 495 (1072)
T KOG0979|consen 486 SEDYLLFVKK 495 (1072)
T ss_pred hHHHHHHHHH
Confidence 3444444433
No 167
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.90 E-value=30 Score=44.99 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=8.8
Q ss_pred HHhccCcCCCHHHHHHHH
Q 001112 1055 ITNDLCPILSVQQLYRIC 1072 (1154)
Q Consensus 1055 i~~~~c~~Ls~~Ql~kil 1072 (1154)
|+.|.-|.++.....-++
T Consensus 659 IiID~pp~~~~~d~~~l~ 676 (754)
T TIGR01005 659 VVVDVGTADPVRDMRAAA 676 (754)
T ss_pred EEEcCCCcchhHHHHHhh
Confidence 444555555555544333
No 168
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.89 E-value=3.1 Score=44.57 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
.+.....+++.++++++.++.++.... .....++..++.+....+.+|+++.++|++++..++.+++.++.++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~---~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTW---NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777666666443 3445555666666777777788888888888888888887776654
No 169
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.75 E-value=38 Score=40.42 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001112 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK-QALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~-~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
...+...++.++.+++.++.+++..+.+++........ ...+....+...+.++..++.++..++..++
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444333333222221 1233444556667777777777776666554
No 170
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.64 E-value=43 Score=38.32 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ----ALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~----l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
...+..++..++..+..++.++..++.+...++....++... ....+..+..++.++..++..+.....+.+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433333333333222 222233334444444444444444333333
No 171
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.59 E-value=22 Score=40.58 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS------------KISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~------------~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~ 675 (1154)
.+.+..|..+...|++.+.+++..+.-+.+++++.. .+.+.+..+++.+..++.+|+.++..+-++.+
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEke 157 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKE 157 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666555554544444322 45566777788888889999999999888888
Q ss_pred hHHHHHHHHHHhhcc
Q 001112 676 DMETENQILRQQSLL 690 (1154)
Q Consensus 676 ~Le~e~~~l~qq~~~ 690 (1154)
++..|-+..+.++.+
T Consensus 158 El~~ERD~yk~K~~R 172 (319)
T PF09789_consen 158 ELVTERDAYKCKAHR 172 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888876544
No 172
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.47 E-value=45 Score=38.22 Aligned_cols=28 Identities=21% Similarity=0.346 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 524 GALQAAKNKLEKQVEELTWRLQLEKRMR 551 (1154)
Q Consensus 524 ~~L~~~~~~LE~kv~el~~~l~~e~~~~ 551 (1154)
..+......+...+.++..+++.+...+
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~ 98 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAER 98 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555554443333
No 173
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=89.46 E-value=30 Score=36.20 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
..+..|.....++.+..+..+..+..+..++.+.+..-.-....+..+++.++.|+..+....++...+..+++..-
T Consensus 123 ~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 123 SNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777777776666666677777888888888888888888888888876543
No 174
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=89.40 E-value=46 Score=38.24 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 001112 659 KIVQLKTAMHRLE 671 (1154)
Q Consensus 659 ~~~~l~~~~~~Le 671 (1154)
..+-++.++.+|+
T Consensus 267 ~q~~leqeva~le 279 (499)
T COG4372 267 AQARLEQEVAQLE 279 (499)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334443333
No 175
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.21 E-value=72 Score=40.27 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
......++++..++.+++.....+..+.+++..++.|
T Consensus 848 ~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~q 884 (970)
T KOG0946|consen 848 NELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQ 884 (970)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHh
Confidence 3344456666667777777766777777776666644
No 176
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.97 E-value=67 Score=39.60 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 001112 664 KTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 664 ~~~~~~Le~~i~~Le~e~~~l 684 (1154)
..++.+|+.+++.-+...+.+
T Consensus 611 R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 611 RGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333
No 177
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.93 E-value=41 Score=42.32 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKI 632 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l 632 (1154)
.+.++.+..+.++++.+...+.+++
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666555555544
No 178
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.89 E-value=6.1 Score=45.36 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.++.+...+.+++.+++.+.+++++++.+++.+..++...-...-.....++.++.+++++...++........+
T Consensus 54 ~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 54 KLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333332222333333445555555555555555555554443
No 179
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.89 E-value=45 Score=37.47 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 001112 613 ELTSENEKLKTLVSSLEKKID 633 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ 633 (1154)
+|-++...++....++..++.
T Consensus 162 el~aei~~lk~~~~e~~eki~ 182 (294)
T COG1340 162 ELKAEIDELKKKAREIHEKIQ 182 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 180
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=88.72 E-value=45 Score=37.29 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 655 ~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
..+.++......-+.+++++..++.||.-|+||.
T Consensus 204 ne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQL 237 (305)
T PF14915_consen 204 NEQDKVNKYIGKQESLEERLSQLQSENMLLRQQL 237 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777788889999999999999999974
No 181
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.62 E-value=43 Score=41.18 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 001112 663 LKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 663 l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.+.+++.++.++..++.+.+.++
T Consensus 322 ~~~~~~~l~~~~~~l~~~~~~~~ 344 (498)
T TIGR03007 322 AEAEIASLEARVAELTARIERLE 344 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443333
No 182
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.59 E-value=58 Score=38.38 Aligned_cols=15 Identities=13% Similarity=0.384 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 001112 948 WQSIIDSLNTLLSTL 962 (1154)
Q Consensus 948 ~~~il~~L~~~~~~l 962 (1154)
..++-..|+.++.-|
T Consensus 603 ledl~~~l~k~~~~l 617 (622)
T COG5185 603 LEDLENELGKVIEEL 617 (622)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444555544443
No 183
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.55 E-value=4.8 Score=35.13 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEK 673 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~ 673 (1154)
.|+.++..|+..++.+..++.-.+.....+..+......++.++-..+.+|..+++.|+.+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666566666666555555555544444444444444433
No 184
>PF13514 AAA_27: AAA domain
Probab=88.45 E-value=1.1e+02 Score=41.62 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 560 QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEA 594 (1154)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ 594 (1154)
.....+..+++.++.++..+...+..-...+..+.
T Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ 835 (1111)
T PF13514_consen 801 EERERLQEQLEELEEELEQAEEELEELEAELAELL 835 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666655555443333333333
No 185
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=88.25 E-value=42 Score=36.35 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 636 EKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 636 e~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.....++..-..++...++-.+..+--|+.++++.+.+|+.|+..++.+.+
T Consensus 256 kssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 256 KSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455555666667777777777777777777776655
No 186
>PLN02939 transferase, transferring glycosyl groups
Probab=87.89 E-value=55 Score=42.94 Aligned_cols=27 Identities=11% Similarity=0.332 Sum_probs=18.2
Q ss_pred HHHHHHhccc-cCCCCCCCCCHHHHHHHHH
Q 001112 1067 QLYRICTLYW-DDNYNTRSVSPNVISSMRI 1095 (1154)
Q Consensus 1067 Ql~kil~~Y~-~d~~e~~~v~~~~i~~v~~ 1095 (1154)
.+++-...|- |.-+| |.+-..+..|..
T Consensus 852 ~IYAaADIFLmPSr~E--PfGLvqLEAMAy 879 (977)
T PLN02939 852 SIYAASDMFIIPSMFE--PCGLTQMIAMRY 879 (977)
T ss_pred HHHHhCCEEEECCCcc--CCcHHHHHHHHC
Confidence 4666666666 56665 577778888755
No 187
>PRK10698 phage shock protein PspA; Provisional
Probab=87.87 E-value=45 Score=36.30 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHHh
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK--I---------VQLKTAMHRLEEKVSD 676 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~--~---------~~l~~~~~~Le~~i~~ 676 (1154)
...+..|+.+....+..++.|+..+..++.++.+.+.....+..+...++.. + ..--....+++++|.+
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~ 177 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQ 177 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777766666666554443222 1 1223345556667766
Q ss_pred HHHHHHH
Q 001112 677 METENQI 683 (1154)
Q Consensus 677 Le~e~~~ 683 (1154)
++.+-+.
T Consensus 178 ~Ea~aea 184 (222)
T PRK10698 178 MEAEAES 184 (222)
T ss_pred HHHHHhH
Confidence 6666544
No 188
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.87 E-value=42 Score=35.97 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 649 ~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
....+..++..+...+-.+..|+..+.....||+.|-
T Consensus 159 ~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt 195 (207)
T PF05010_consen 159 HQAELLALQASLKKEEMKVQSLEESLEQKTKENEELT 195 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666666666666666666666553
No 189
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=87.73 E-value=54 Score=37.07 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 637 KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 637 ~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
..+..+.+++-++...++..+.-+ +..|..++..|..+...|+.
T Consensus 156 ~~le~Lr~EKVdlEn~LE~EQE~l------vN~L~Kqm~~l~~eKr~Lq~ 199 (310)
T PF09755_consen 156 EELERLRREKVDLENTLEQEQEAL------VNRLWKQMDKLEAEKRRLQE 199 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433322 23344444445555555544
No 190
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.53 E-value=92 Score=40.03 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 523 TGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKL 583 (1154)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~ 583 (1154)
.+...+..+.|.+++..+-..+....-.-...|.+-.+|.+.+..++..|+..+++++.++
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555544444333211111111222333455555555555655555554443
No 191
>PRK11281 hypothetical protein; Provisional
Probab=87.37 E-value=18 Score=48.45 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1154)
......|+.|...++.+.+-.+.++.
T Consensus 191 ~~~~~~l~ae~~~l~~~~~~~~~~l~ 216 (1113)
T PRK11281 191 PSQRVLLQAEQALLNAQNDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666555555444
No 192
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.34 E-value=29 Score=40.53 Aligned_cols=6 Identities=17% Similarity=0.816 Sum_probs=2.3
Q ss_pred CCcccc
Q 001112 278 PAIFEN 283 (1154)
Q Consensus 278 ~~~fd~ 283 (1154)
|..||.
T Consensus 63 p~e~DD 68 (359)
T PF10498_consen 63 PQEYDD 68 (359)
T ss_pred CcccCC
Confidence 333433
No 193
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.33 E-value=24 Score=47.20 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001112 607 DHAVVEELTSENEKLKTLVSSLEKKID 633 (1154)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1154)
.......|+.|...++.+++.++.++.
T Consensus 171 ~~a~~~~lqae~~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 171 AQAQLTALQAESAALKALVDELELAQL 197 (1109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666665554
No 194
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=87.14 E-value=10 Score=35.51 Aligned_cols=72 Identities=21% Similarity=0.185 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
|-.|..+|+.+..-|++.+-+.+.+..++..........+..++..++.|.=....|..++..|++|++...
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777777777777777777766666666666666666777777777777777777777777443
No 195
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.08 E-value=9.3 Score=32.44 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001112 640 EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1154)
Q Consensus 640 ~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le 678 (1154)
..+.........++.+++.....|..++..|+.++++++
T Consensus 21 ~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 21 TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444455555555555555555555544443
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.00 E-value=22 Score=41.67 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 001112 665 TAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 665 ~~~~~Le~~i~~Le~e~~~ 683 (1154)
+.+...+++|.+|++++..
T Consensus 428 ~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444433
No 197
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=86.96 E-value=9.2 Score=33.38 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 620 KLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 620 kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
+|+..+..|+..++.+..++...+.....+...=..+...+...-.++.+|.++++.|+.|++..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578888888888888888887777666666665555666666666677777777777777766554
No 198
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.82 E-value=4.6 Score=43.10 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
++++.++++...++++.+++..+..+|-+|.+.|+.+.
T Consensus 172 ~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 172 KKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666666666666666654
No 199
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.77 E-value=64 Score=41.00 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1154)
.++.....+...|+.++..|+.++...+.
T Consensus 359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~ 387 (717)
T PF09730_consen 359 CKYKVAVSEVIQLKAELKALKSKYNELEE 387 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554444433
No 200
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.60 E-value=12 Score=45.47 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=7.6
Q ss_pred HHHHhhcCccchhhcc
Q 001112 131 ILDLIEKKPGGIIALL 146 (1154)
Q Consensus 131 ~ldlie~~~~Gil~lL 146 (1154)
+.+|..++. +|+.+|
T Consensus 59 vyEL~~~~~-~li~il 73 (652)
T COG2433 59 VYELGADKR-DLIRIL 73 (652)
T ss_pred HHHHhcChh-HHHHHH
Confidence 455555443 555554
No 201
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.20 E-value=82 Score=38.81 Aligned_cols=30 Identities=10% Similarity=0.292 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
..+..|+++++.+..++...=.++...|++
T Consensus 342 ~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 342 ESLEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555553
No 202
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=85.84 E-value=1.1e+02 Score=38.51 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 001112 664 KTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 664 ~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
-.+......++.+|++.++.+.+
T Consensus 570 v~~tG~~~rEirdLe~qI~~e~~ 592 (594)
T PF05667_consen 570 VEETGTISREIRDLEEQIDTESQ 592 (594)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhc
Confidence 33334455566666666665544
No 203
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.72 E-value=37 Score=38.44 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 659 ~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
...++..++...+..+..++..+..-|.
T Consensus 120 ~~~~~~~~~~~~~~~l~~l~~~l~~~r~ 147 (302)
T PF10186_consen 120 QLEELQNELEERKQRLSQLQSQLARRRR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555544433
No 204
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=85.71 E-value=22 Score=34.47 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001112 612 EELTSENEKLKTLVSSLEKKIDETEKKFE---------------ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~---------------e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~ 676 (1154)
+.+...+..++.++.+.+..+++++.--. .......++..+++.++..+..++++.+.+++++++
T Consensus 23 ~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~e 102 (119)
T COG1382 23 QKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEE 102 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554443111 123334455556666677777777777777777777
Q ss_pred HHHHHHHHHH
Q 001112 677 METENQILRQ 686 (1154)
Q Consensus 677 Le~e~~~l~q 686 (1154)
|++++...-.
T Consensus 103 Lq~~i~~~l~ 112 (119)
T COG1382 103 LQSEIQKALG 112 (119)
T ss_pred HHHHHHHHhh
Confidence 7777655433
No 205
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.57 E-value=53 Score=37.20 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 001112 661 VQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 661 ~~l~~~~~~Le~~i~~Le~e 680 (1154)
...+..+..+...+..-+..
T Consensus 129 ~~~~~~l~~l~~~l~~~r~~ 148 (302)
T PF10186_consen 129 EERKQRLSQLQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444433333
No 206
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.56 E-value=85 Score=37.17 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 654 ~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.+++..+...++.+++|..+-..|+.++..++
T Consensus 213 ~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 213 AQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33334444444444444444444555554444
No 207
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=85.33 E-value=0.26 Score=64.16 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
.+..+..++..|..++.++...+++..+.+.++++.+..+...+.+++..+..++..+...+.....++.++..
T Consensus 427 ~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~ 500 (859)
T PF01576_consen 427 QLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQ 500 (859)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444333334433333333333333333333333333333333333333333
No 208
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=85.13 E-value=0.27 Score=64.03 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA 656 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~ 656 (1154)
.|+..+.+|...+.+++..+++.......+++.+..+...++++
T Consensus 318 elEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl 361 (859)
T PF01576_consen 318 ELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDL 361 (859)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555544444444444444444444443
No 209
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.92 E-value=15 Score=34.54 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 614 LTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e 641 (1154)
|-++++.|+..+..|+.......+++.+
T Consensus 35 L~kqkd~L~~~l~~L~~q~~s~~qr~~e 62 (107)
T PF09304_consen 35 LAKQKDQLRNALQSLQAQNASRNQRIAE 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333433333333333333333333
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.83 E-value=59 Score=38.25 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhHH
Q 001112 662 QLKTAMHRLEEKVSDME 678 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le 678 (1154)
..+.++.+|++++.+|=
T Consensus 432 s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHhHh
Confidence 34444555555555443
No 211
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.66 E-value=28 Score=41.32 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+.++.+.+++....+++..|...+.++++++..+..+++++..-+......-++++.+.++++++-.++....+..+.
T Consensus 218 ~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 218 QEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888899999999999988888888888877777766667778888888888888887777766555
No 212
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=84.58 E-value=82 Score=36.15 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
......+..+++.+-.++..|+.|+..++..
T Consensus 236 Ne~F~tfk~Emekm~Kk~kklEKE~~~~k~k 266 (309)
T PF09728_consen 236 NEVFETFKKEMEKMSKKIKKLEKENQTWKSK 266 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777777777788887777663
No 213
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=84.52 E-value=1.4e+02 Score=38.68 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhc
Q 001112 246 SRFKQQLQQLLETLS 260 (1154)
Q Consensus 246 ~~f~~sl~~L~~~l~ 260 (1154)
..+..++..|.+.|.
T Consensus 152 ~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 152 DKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345677777877773
No 214
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.40 E-value=54 Score=35.87 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
....+.+..+.++.+++..|+++.+.++.+
T Consensus 74 ~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 74 SERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555666666666554
No 215
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.16 E-value=68 Score=39.84 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETE 636 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1154)
+..+..++++|....++|+..+++++
T Consensus 232 l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 232 LEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 216
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=83.12 E-value=1.2e+02 Score=36.87 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=9.2
Q ss_pred cchHHHHHHHHHHHHHHhc
Q 001112 242 SSIGSRFKQQLQQLLETLS 260 (1154)
Q Consensus 242 ~tv~~~f~~sl~~L~~~l~ 260 (1154)
++|..+...+|+.|-+.+.
T Consensus 167 s~v~~~l~~~l~~l~d~~k 185 (518)
T PF10212_consen 167 SAVFTQLAASLHKLHDVLK 185 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444443
No 217
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.10 E-value=71 Score=34.32 Aligned_cols=21 Identities=14% Similarity=-0.064 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 001112 427 LRIQRDLRMYLAKKAYKDMCF 447 (1154)
Q Consensus 427 i~IQ~~~R~~~~Rk~y~~~r~ 447 (1154)
-..|..|+.+...+.|+..|+
T Consensus 79 ~~~~~~a~~~~~~~l~raqrn 99 (216)
T KOG1962|consen 79 PTDQPLARTHLLEALFRAQRN 99 (216)
T ss_pred CccchHHHHHHHHHHHHHHhh
Confidence 345555555555555554443
No 218
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.67 E-value=1.4e+02 Score=37.35 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Q 001112 470 QTRASILIQSHCRKYLARLHYMK 492 (1154)
Q Consensus 470 ~~~aa~~IQ~~~R~~~~r~~~~~ 492 (1154)
..+++++.++.+..-..|.++..
T Consensus 85 ~~k~~~i~~r~~~~~~dr~~~~~ 107 (716)
T KOG4593|consen 85 LTKAQSILARNYEAEVDRKHKLL 107 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776666766544
No 219
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.65 E-value=54 Score=42.86 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhccCC-Ceeeee-------------cCCCCC--CCCCcccccchh
Q 001112 247 RFKQQLQQLLETLSSSE-PHYIRC-------------VKPNNL--LKPAIFENKNVL 287 (1154)
Q Consensus 247 ~f~~sl~~L~~~l~~t~-~hfirC-------------ikPN~~--~~~~~fd~~~v~ 287 (1154)
..-..|..|+++|...+ -++|+| +-|++. +..+.||...+.
T Consensus 163 IIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~ 219 (1041)
T KOG0243|consen 163 IIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIV 219 (1041)
T ss_pred cchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCccc
Confidence 34457778888888777 444676 456666 566677666433
No 220
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.45 E-value=13 Score=31.88 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 655 ~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
++..+...|..+..+++...+.|+.+++.+++
T Consensus 29 ELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 29 ELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444555555554444
No 221
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.28 E-value=1.1e+02 Score=38.33 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 659 KIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 659 ~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.+..++++++.+++++.++-.++...|++
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554443
No 222
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=82.25 E-value=1.1e+02 Score=35.78 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001112 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1154)
Q Consensus 632 l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~ 679 (1154)
+.+.+..+.+.+....++...+..++........+..+|+.++...+.
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333333333333333444443333333
No 223
>PF13514 AAA_27: AAA domain
Probab=82.19 E-value=1.3e+02 Score=41.18 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=17.7
Q ss_pred chhhhHHHHhcCCCCccChHHHHH
Q 001112 294 GVMEAIRISCAGYPTRKPFDEFVD 317 (1154)
Q Consensus 294 gvle~iri~~~gyp~r~~~~~F~~ 317 (1154)
=++..|+-.-.|||.|-+|. |+.
T Consensus 11 T~l~fI~~lLFGfp~r~~~~-f~~ 33 (1111)
T PF13514_consen 11 TLLAFIRDLLFGFPTRSPYN-FYH 33 (1111)
T ss_pred HHHHHHHHHhcCCCCCCCcc-cCC
Confidence 35677777889999998887 654
No 224
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.81 E-value=26 Score=35.64 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001112 614 LTSENEKLKTLVSSLEKKIDETEKKF 639 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1154)
+..++..++..++.|+.++++++.++
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 225
>PRK12704 phosphodiesterase; Provisional
Probab=81.78 E-value=55 Score=40.38 Aligned_cols=12 Identities=8% Similarity=-0.067 Sum_probs=5.4
Q ss_pred hHHHHHHHhHHh
Q 001112 1032 LKHIRQAVGFLV 1043 (1154)
Q Consensus 1032 L~~l~Qa~~lLq 1043 (1154)
+..|+++++.|.
T Consensus 416 ~a~IV~~ADaLs 427 (520)
T PRK12704 416 EAVLVAAADAIS 427 (520)
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 226
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=81.51 E-value=1.3e+02 Score=36.36 Aligned_cols=12 Identities=8% Similarity=0.171 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 001112 794 VFDRLIQMIGSA 805 (1154)
Q Consensus 794 ll~~ii~~i~~~ 805 (1154)
.+..-+..|+..
T Consensus 279 ~Lk~H~~svr~H 290 (475)
T PRK10361 279 ALQEHIASVRNH 290 (475)
T ss_pred HHHHHHHHHHHH
Confidence 333333344433
No 227
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.45 E-value=1.3e+02 Score=36.26 Aligned_cols=20 Identities=40% Similarity=0.468 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEK 630 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~ 630 (1154)
+.+|+.|+-.|+..+..|+.
T Consensus 172 YSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 172 YSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHhcchHHHHHHHHhh
Confidence 44455555555555554443
No 228
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.30 E-value=1e+02 Score=37.19 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001112 560 QENAKLQSALQEMQLQ 575 (1154)
Q Consensus 560 ~e~~~L~~~l~~le~~ 575 (1154)
.|...|.+.+..++.+
T Consensus 338 ke~kdLkEkv~~lq~~ 353 (654)
T KOG4809|consen 338 KENKDLKEKVNALQAE 353 (654)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 229
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=81.18 E-value=74 Score=33.21 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 633 DETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 633 ~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
....+++..+..+...+...+.+.+..+..+..++...+.+...++..+..++.
T Consensus 80 ~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 80 THVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555555555555555555555554
No 230
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=81.16 E-value=1.6e+02 Score=37.17 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
.+..|+.....+......+.+++.-+...++...+...+....++.++......+.++++++..+.++..+++.++++.
T Consensus 525 ~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~ 603 (698)
T KOG0978|consen 525 KIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKR 603 (698)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444445555555555555556666666666666677777777777777776666543
No 231
>PRK11281 hypothetical protein; Provisional
Probab=80.92 E-value=55 Score=43.96 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 614 LTSENEKLKTLVSSLEKKIDETEK 637 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~ 637 (1154)
|+.....++.++++.++.+.+...
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~Ns 149 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNS 149 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555544444433
No 232
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=80.90 E-value=65 Score=38.15 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001112 454 TGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYM 491 (1154)
Q Consensus 454 s~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~ 491 (1154)
..+--+..-.++.+...+.||..+|..|.-|+..+-++
T Consensus 347 KhVhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~~ 384 (489)
T KOG3684|consen 347 KHVHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLVS 384 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34444455555666667778888888888887766553
No 233
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.88 E-value=17 Score=35.71 Aligned_cols=66 Identities=17% Similarity=0.298 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001112 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le 678 (1154)
.|...+++|.++++.+-.++++..+-.+..+.+..++...+......+..++..+..|+.+|.+++
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555544444444444444444444444444444444444444444443
No 234
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.62 E-value=61 Score=35.41 Aligned_cols=62 Identities=18% Similarity=0.304 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001112 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e 680 (1154)
+.|..|+....++|......+..+|..+..++.+..+ .+..+..+.+++..|++++.++..+
T Consensus 42 ~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~-------~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 42 EELLQERMAHVEELRQINQDINTLENIIKQAESERNK-------RQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455444444444433 3333445556666666666666666
No 235
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=80.54 E-value=1.5e+02 Score=36.37 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001112 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
|......++.++..++.++..++..+++++.+.. .+-+.+.++..|+.+.+..++....+-+.++.
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~----~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLR----TIPEVEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333332222 12233444445555555555444444444443
No 236
>PRK00106 hypothetical protein; Provisional
Probab=80.04 E-value=1.4e+02 Score=36.95 Aligned_cols=130 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 001112 549 RMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSL 628 (1154)
Q Consensus 549 ~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l 628 (1154)
+++...+.+.-.-....+..-+-++..-.+++.-..+...+.+....+. ..+.-+++......++.++.+-
T Consensus 25 ~~~~~~~~~~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~---------~lEaeeEi~~~R~ElEkel~eE 95 (535)
T PRK00106 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKEL---------LLEAKEEARKYREEIEQEFKSE 95 (535)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 629 EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 629 ~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+.++.+.|.++...+....+....++..+..+...++++...++++.+++.+.+.+.++
T Consensus 96 r~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~ 154 (535)
T PRK00106 96 RQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQ 154 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 237
>PTZ00121 MAEBL; Provisional
Probab=79.79 E-value=2.4e+02 Score=38.29 Aligned_cols=6 Identities=33% Similarity=0.899 Sum_probs=2.5
Q ss_pred eeecCC
Q 001112 267 IRCVKP 272 (1154)
Q Consensus 267 irCikP 272 (1154)
-+|+-|
T Consensus 827 SyClgp 832 (2084)
T PTZ00121 827 SYCLGP 832 (2084)
T ss_pred HhhcCc
Confidence 344444
No 238
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.59 E-value=1.8e+02 Score=36.53 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=14.5
Q ss_pred hccCcCCCHHHHH-------HHHhccccCCC
Q 001112 1057 NDLCPILSVQQLY-------RICTLYWDDNY 1080 (1154)
Q Consensus 1057 ~~~c~~Ls~~Ql~-------kil~~Y~~d~~ 1080 (1154)
++.|.+|-.-+|. +|-+.|.+.++
T Consensus 631 r~ac~sL~Gykid~~~~s~~ritS~ya~~~~ 661 (716)
T KOG4593|consen 631 RDACYSLLGYKIDFTLESRYRLTSGYAEEPD 661 (716)
T ss_pred HHHHHhhhhhhhhcccccceeeeeeccCCCc
Confidence 4667777777664 45556665444
No 239
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.53 E-value=41 Score=38.31 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001112 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le 678 (1154)
.|..|+..|.-+++-|+.+++++++.+..+.++..+....++-.......++.++..|+++|....
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rd 167 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRD 167 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666667666666666665555555555555566666666666554433
No 240
>PRK04406 hypothetical protein; Provisional
Probab=79.28 E-value=14 Score=32.90 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=7.7
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 001112 628 LEKKIDETEKKFEETSKISE 647 (1154)
Q Consensus 628 l~~~l~ele~~~~e~~~~~~ 647 (1154)
++.++.++|.+++-.+...+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe 28 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIE 28 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333
No 241
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.17 E-value=95 Score=33.24 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI-VQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~-~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
...+......++.++.+++.+.+.++.++..++.++.++..+...+-..+ ....-..--|+.++..|.+.++.-..
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666777777777777777777777766666655443322 22233334466666666666554433
No 242
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=79.14 E-value=18 Score=38.29 Aligned_cols=76 Identities=30% Similarity=0.457 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHH
Q 001112 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETS------KISEERLKQALEAESKIVQLKTAMHRLE----EKVSDMETEN 681 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~------~~~~~~~~~l~~~e~~~~~l~~~~~~Le----~~i~~Le~e~ 681 (1154)
..+.....+|+.++++++.++.+++.+++... .++..+..++.+++.++..++.+++.+. +.+..+++++
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~ 144 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEI 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 33444444444444444444444444433332 2334444555555555556665555443 2555666666
Q ss_pred HHHHHh
Q 001112 682 QILRQQ 687 (1154)
Q Consensus 682 ~~l~qq 687 (1154)
..++..
T Consensus 145 ~~~~~~ 150 (188)
T PF03962_consen 145 KIAKEA 150 (188)
T ss_pred HHHHHH
Confidence 655553
No 243
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=79.13 E-value=1.3e+02 Score=34.68 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 659 ~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+.--+.+++=|+.+|..|++|++....
T Consensus 513 LLRVKEsEiQYLKqEissLkDELQtalr 540 (593)
T KOG4807|consen 513 LLRVKESEIQYLKQEISSLKDELQTALR 540 (593)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566777777788888888765443
No 244
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=78.82 E-value=94 Score=38.33 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 562 NAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1154)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e 641 (1154)
.......+++.+.+.+...++...+-+...+.. ..+.-+++......++.++.+.+.++.+.|.++.+
T Consensus 20 k~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~------------~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~q 87 (514)
T TIGR03319 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEA------------LLEAKEEVHKLRAELERELKERRNELQRLERRLLQ 87 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 642 ~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.+....+....++..++.+...+.++...+.++.+++.+...+.++
T Consensus 88 Ree~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~ 133 (514)
T TIGR03319 88 REETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAE 133 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 245
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=78.70 E-value=2.1e+02 Score=36.97 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHHHHHHHHHHHhHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE--AESKIV-----QLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~--~e~~~~-----~l~~~~~~Le~~i~~Le~e 680 (1154)
...+.+|...+...+.++..|..+++..++....++.+..-+.+.++- .+..+. ...++--+--.+|.+|+.|
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaE 198 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAE 198 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999888888888777666532 122221 1111111222488999999
Q ss_pred HHHHHH
Q 001112 681 NQILRQ 686 (1154)
Q Consensus 681 ~~~l~q 686 (1154)
=..||-
T Consensus 199 C~rLr~ 204 (769)
T PF05911_consen 199 CQRLRA 204 (769)
T ss_pred HHHHHH
Confidence 988876
No 246
>PF15456 Uds1: Up-regulated During Septation
Probab=78.69 E-value=32 Score=33.76 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL-----------KQALEAESKIVQLKTAMHRLEEKVS 675 (1154)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~-----------~~l~~~e~~~~~l~~~~~~Le~~i~ 675 (1154)
..++++.|.+|...|...++.++.++. ++.++.++-.....+- ..+.+.+..+......++++..++.
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~ 98 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELW 98 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467889999999999999999998888 7776666544433330 1234455566666777777777777
Q ss_pred hHHHHHHHHHHh
Q 001112 676 DMETENQILRQQ 687 (1154)
Q Consensus 676 ~Le~e~~~l~qq 687 (1154)
.++......++.
T Consensus 99 ~le~R~~~~~~r 110 (124)
T PF15456_consen 99 KLENRLAEVRQR 110 (124)
T ss_pred HHHHHHHHHHHH
Confidence 777776666664
No 247
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=78.68 E-value=43 Score=35.54 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=10.4
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 001112 667 MHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 667 ~~~Le~~i~~Le~e~~~l~q 686 (1154)
...|..+++.|..|+..+++
T Consensus 133 ~~~l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQ 152 (202)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554
No 248
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=78.50 E-value=1.4e+02 Score=34.78 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001112 611 VEELTSENEKLKTLVSSL 628 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l 628 (1154)
++.|..|+.+|+..+...
T Consensus 255 i~~l~~EveRlrt~l~~A 272 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRA 272 (552)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 249
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=78.16 E-value=1.8e+02 Score=35.92 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 660 IVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+.-...+++.-+..+..++.|.+.|+.+
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555666666666666654
No 250
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.11 E-value=34 Score=30.44 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 001112 616 SENEKLKTLVSSLEKKIDETEKK 638 (1154)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ele~~ 638 (1154)
..+.-|+-++++|+++...+...
T Consensus 18 dtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443333333
No 251
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.08 E-value=1.5e+02 Score=34.99 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 661 VQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 661 ~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.++...+...++.|.+..+|-..|+++
T Consensus 392 kEi~gniRKq~~DI~Kil~etreLqkq 418 (521)
T KOG1937|consen 392 KEIDGNIRKQEQDIVKILEETRELQKQ 418 (521)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555666554
No 252
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.05 E-value=19 Score=32.00 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 655 ~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
++..+...+..++..+...-..|+.+++.+++
T Consensus 29 ELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 29 ELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333444444433344444444444444
No 253
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=77.99 E-value=11 Score=32.88 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=15.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 631 KIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1154)
Q Consensus 631 ~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~ 672 (1154)
++.++|.+++-.+...+++...+..-+..+..|+..+..|.+
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333333333333333333333333333333333
No 254
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=77.77 E-value=1.1e+02 Score=33.36 Aligned_cols=28 Identities=18% Similarity=0.560 Sum_probs=17.1
Q ss_pred cchhhhHHHHh----cCCCCccChHHHHHHHh
Q 001112 293 GGVMEAIRISC----AGYPTRKPFDEFVDRFG 320 (1154)
Q Consensus 293 ~gvle~iri~~----~gyp~r~~~~~F~~ry~ 320 (1154)
+|..+.+++.. -.||+|-.+++|+..-.
T Consensus 107 sgfad~lkvka~eakidfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 107 SGFADILKVKAAEAKIDFPSRHDWDDFFMDAK 138 (445)
T ss_pred cccchHHhhhHHhhcCCCCcccchHHHHhhhh
Confidence 44445444443 35888888888876543
No 255
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=77.30 E-value=1.1e+02 Score=33.10 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI-----------VQLKTAMHRLEEKVSD 676 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~-----------~~l~~~~~~Le~~i~~ 676 (1154)
......|+.+...++..++.|+..+.+++.++.+++.....+..+...++... ......++++++++..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~ 177 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDE 177 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 45566777777777888888888888888887777776666655554443321 2334455566666666
Q ss_pred HHHHHH
Q 001112 677 METENQ 682 (1154)
Q Consensus 677 Le~e~~ 682 (1154)
++.+-+
T Consensus 178 ~ea~ae 183 (219)
T TIGR02977 178 LEAQAE 183 (219)
T ss_pred HHHHHH
Confidence 555543
No 256
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.93 E-value=1.1e+02 Score=33.85 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001112 617 ENEKLKTLVSSLEKKIDETEKKFEETS 643 (1154)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~ 643 (1154)
.++.++..+++.++++.+++.++++++
T Consensus 71 ~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 71 YNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444443333333
No 257
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=76.65 E-value=1e+02 Score=32.23 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER---LKQ-ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~---~~~-l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
++..|...+.+|+.+..+|+.-.--+.....+-++...+- -.- ..-.++++..++.++.+|+.+.++|-.||..|+
T Consensus 56 EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLK 135 (195)
T PF10226_consen 56 EIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELK 135 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444555555555555555544333333222222211111 111 233467788899999999999999999999988
Q ss_pred Hhhc
Q 001112 686 QQSL 689 (1154)
Q Consensus 686 qq~~ 689 (1154)
.--+
T Consensus 136 Elcl 139 (195)
T PF10226_consen 136 ELCL 139 (195)
T ss_pred HHHH
Confidence 8543
No 258
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=76.31 E-value=41 Score=28.63 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 655 EAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 655 ~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.++.++...+..+.+|..+|..|+.+++.+|
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444455555555555444443
No 259
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.27 E-value=33 Score=38.11 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
+++.+..+...|..++..++.+++.++...+.+++.......++.+++.++..++....++..-+..+-+++
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555554444444444444444444444444444444444443
No 260
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=76.00 E-value=1.3e+02 Score=33.28 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+.+++..-++.+.++++++..|+.
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~ 214 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRA 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555
No 261
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=75.97 E-value=55 Score=31.04 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001112 654 LEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 654 ~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
+..+..+..++++++.++.++.+++.++..
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 262
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.96 E-value=12 Score=38.75 Aligned_cols=67 Identities=22% Similarity=0.381 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+....+..++..|+.++.+++..+..++.++..+.. .+- ..++...+..|+.++..+++.++.++.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~-------~~t-----~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSS-------EPT-----NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566666666666555555555554444433332 221 134556666666666666666666665
No 263
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.92 E-value=12 Score=38.93 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 001112 611 VEELTSENEKLKTLVSSLEKKID 633 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ 633 (1154)
+..|..+...++..+..++.++.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 264
>PLN03188 kinesin-12 family protein; Provisional
Probab=75.71 E-value=3e+02 Score=37.16 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=20.8
Q ss_pred HHHhHHHHhhhhhhHhH---hhhcC----CccccccccCcHHHHHHhhc
Q 001112 96 KLQQHFNQHVFKMEQEE---YSKEA----INWSYIEFVDNQDILDLIEK 137 (1154)
Q Consensus 96 kLq~~f~~~vf~~eqee---y~~E~----i~~~~i~~~dn~~~ldlie~ 137 (1154)
=|-..+.+++|..-.+. ....+ |..++++.+ |..+.||+..
T Consensus 201 GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIY-NEkI~DLLsp 248 (1320)
T PLN03188 201 GLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIY-NEQITDLLDP 248 (1320)
T ss_pred CchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeee-cCcceecccc
Confidence 34455666667532211 11122 233455555 5668999864
No 265
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=75.66 E-value=26 Score=35.66 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+....|..++.+|++.+.++.+.....+.+ ..++.+.|. +.++++++.+|+.++...++.+..++.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaE-------ik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAE-------IKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444444433 333333321 123455555555555555555555543
No 266
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=75.35 E-value=76 Score=30.08 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001112 526 LQAAKNKLEKQVEELTWRLQ 545 (1154)
Q Consensus 526 L~~~~~~LE~kv~el~~~l~ 545 (1154)
|...+..+++++.-|+..++
T Consensus 7 l~as~~el~n~La~Le~slE 26 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLE 26 (107)
T ss_dssp -------HHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 267
>PRK02119 hypothetical protein; Provisional
Probab=75.28 E-value=17 Score=32.14 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=6.6
Q ss_pred HHHhHHHHHHHHHHHHH
Q 001112 629 EKKIDETEKKFEETSKI 645 (1154)
Q Consensus 629 ~~~l~ele~~~~e~~~~ 645 (1154)
+.++.++|.+++-.+..
T Consensus 8 e~Ri~~LE~rla~QE~t 24 (73)
T PRK02119 8 ENRIAELEMKIAFQENL 24 (73)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444333333
No 268
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.49 E-value=1.8e+02 Score=36.62 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001112 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRV---DMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAE 595 (1154)
Q Consensus 519 ~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~---~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~e 595 (1154)
+.....+|.......|+++.++...+.+....-. .-+....+....+...+++|..+.++-..+..+-..+++++-+
T Consensus 59 a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 59 ASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCE 138 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666655543221111 0111222344444555555555555444444333344444443
Q ss_pred hc
Q 001112 596 KV 597 (1154)
Q Consensus 596 e~ 597 (1154)
++
T Consensus 139 ~l 140 (660)
T KOG4302|consen 139 EL 140 (660)
T ss_pred Hh
Confidence 33
No 269
>PLN02939 transferase, transferring glycosyl groups
Probab=74.30 E-value=3e+02 Score=36.49 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=9.4
Q ss_pred HHHHHHHhHHhhc
Q 001112 1033 KHIRQAVGFLVIH 1045 (1154)
Q Consensus 1033 ~~l~Qa~~lLq~~ 1045 (1154)
..+..+++++.+|
T Consensus 851 h~IYAaADIFLmP 863 (977)
T PLN02939 851 HSIYAASDMFIIP 863 (977)
T ss_pred HHHHHhCCEEEEC
Confidence 3577778888776
No 270
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.30 E-value=2.9e+02 Score=36.39 Aligned_cols=44 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred eeeecCCCCCCCCCccccc-chh----hhhhccchhhhHHHHhcCCCCccChH
Q 001112 266 YIRCVKPNNLLKPAIFENK-NVL----QQLRCGGVMEAIRISCAGYPTRKPFD 313 (1154)
Q Consensus 266 firCikPN~~~~~~~fd~~-~v~----~QLr~~gvle~iri~~~gyp~r~~~~ 313 (1154)
|---|=||-..+.+..|.- .|+ .+||...+-+.|- |||.+-+-.
T Consensus 27 FTaIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdLIy----g~~i~~~v~ 75 (1141)
T KOG0018|consen 27 FTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIY----GKPIRKPVT 75 (1141)
T ss_pred ceeeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHHhc----CCccCCchh
Confidence 3334555555555555442 121 3444444444433 666655444
No 271
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=74.22 E-value=2.3e+02 Score=35.14 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKID-------ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~-------ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
..+..|+.+..+++.+++.....-. ++...+.++..+.+.........+..+..+..++...+..+...+..+
T Consensus 337 ~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL 416 (522)
T PF05701_consen 337 SEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERL 416 (522)
T ss_pred hHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544333222 333344444444444444444445555555555555555555555555
Q ss_pred HHHHH
Q 001112 682 QILRQ 686 (1154)
Q Consensus 682 ~~l~q 686 (1154)
....+
T Consensus 417 ~aa~k 421 (522)
T PF05701_consen 417 EAALK 421 (522)
T ss_pred HHHHH
Confidence 44433
No 272
>PRK02793 phi X174 lysis protein; Provisional
Probab=73.10 E-value=21 Score=31.52 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=7.0
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 001112 630 KKIDETEKKFEETSKISE 647 (1154)
Q Consensus 630 ~~l~ele~~~~e~~~~~~ 647 (1154)
.++.++|.+++-.+...+
T Consensus 8 ~Ri~~LE~~lafQe~tIe 25 (72)
T PRK02793 8 ARLAELESRLAFQEITIE 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444433333333
No 273
>PRK04325 hypothetical protein; Provisional
Probab=73.09 E-value=22 Score=31.59 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 629 EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL 670 (1154)
Q Consensus 629 ~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~L 670 (1154)
+.++.+||.+++-.+...+++...+..-++.+..++.++..|
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443433333333333333344443333
No 274
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=73.08 E-value=1.6e+02 Score=38.87 Aligned_cols=8 Identities=50% Similarity=0.630 Sum_probs=4.2
Q ss_pred ccceeeee
Q 001112 352 GKTKVFLR 359 (1154)
Q Consensus 352 G~TkVFlr 359 (1154)
|+||.-+-
T Consensus 357 GkTKT~iI 364 (1041)
T KOG0243|consen 357 GKTKTCII 364 (1041)
T ss_pred CCceeEEE
Confidence 45555553
No 275
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=73.00 E-value=2e+02 Score=35.62 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 001112 970 VLVQKIFTQTFSY 982 (1154)
Q Consensus 970 ~l~~Q~f~Qlf~~ 982 (1154)
....++.-|||-|
T Consensus 651 ~~d~alm~ql~pl 663 (811)
T KOG4364|consen 651 ICDRALMVQLFPL 663 (811)
T ss_pred HHHHHHHHHHhhh
Confidence 3344444455443
No 276
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.86 E-value=1.1 Score=57.53 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 512 ELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEK 582 (1154)
Q Consensus 512 ~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~ 582 (1154)
+++.|+.....++-|++.+..|+.++..++ ....+...++-++..|+.++..|..-
T Consensus 272 Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E---------------~~~~el~~lq~e~~~Le~el~sW~sl 327 (722)
T PF05557_consen 272 ELKHLRQSQENVELLEEEKRSLQRKLERLE---------------ELEEELAELQLENEKLEDELNSWESL 327 (722)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555443332 22234445555566666666666543
No 277
>PRK00846 hypothetical protein; Provisional
Probab=72.75 E-value=25 Score=31.42 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=7.5
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 001112 629 EKKIDETEKKFEETSKISE 647 (1154)
Q Consensus 629 ~~~l~ele~~~~e~~~~~~ 647 (1154)
+.++.++|.+++-.+...+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe 30 (77)
T PRK00846 12 EARLVELETRLSFQEQALT 30 (77)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333
No 278
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.22 E-value=78 Score=30.29 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001112 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
++..+..+..++++...++.++.+++.++.
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 279
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.21 E-value=1.4e+02 Score=31.69 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 521 RETGALQAAKNKLEKQVEELTWRLQL 546 (1154)
Q Consensus 521 ~~~~~L~~~~~~LE~kv~el~~~l~~ 546 (1154)
.++..|+.....|+.++.+++.+.+.
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655553
No 280
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.83 E-value=1.3e+02 Score=33.30 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEK 637 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1154)
+.+..+|++.|++-++-++..|.+-++
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 445567777778777777776665543
No 281
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=71.69 E-value=46 Score=35.24 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 001112 665 TAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 665 ~~~~~Le~~i~~Le~e~~~l 684 (1154)
.++.+++..+..++++....
T Consensus 159 ~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 282
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=71.68 E-value=1.6e+02 Score=37.59 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=8.7
Q ss_pred cchhhH-HHhHHHHHHHHHH
Q 001112 813 DHMAYW-LSNTSTLLFLLQR 831 (1154)
Q Consensus 813 ~~l~fW-LSN~~~Ll~~lq~ 831 (1154)
..+..| ..++-.+..+|+.
T Consensus 481 ~~~t~~~V~s~~~v~~ll~~ 500 (670)
T KOG0239|consen 481 PLLTVIKVGSSEEVDILLEI 500 (670)
T ss_pred ccceEEecCCHHHHHHHHHH
Confidence 334444 4444555555443
No 283
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.59 E-value=4.2 Score=49.86 Aligned_cols=24 Identities=54% Similarity=0.675 Sum_probs=17.9
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHH
Q 001112 420 MRREASCLRIQRDLRMYLAKKAYK 443 (1154)
Q Consensus 420 ~r~~~AAi~IQ~~~R~~~~Rk~y~ 443 (1154)
.|+++||+.||++||+|.+|++|.
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888887765
No 284
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=71.51 E-value=1e+02 Score=29.98 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 654 ~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
......+..+..++..|+..+..+++.+..+..
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666665544
No 285
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.40 E-value=1e+02 Score=32.70 Aligned_cols=23 Identities=35% Similarity=0.461 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001112 524 GALQAAKNKLEKQVEELTWRLQL 546 (1154)
Q Consensus 524 ~~L~~~~~~LE~kv~el~~~l~~ 546 (1154)
..|++....++.++.+++.+++.
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555444443
No 286
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=71.24 E-value=13 Score=44.44 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=8.0
Q ss_pred HHHHhHHHHHHHHHHHH
Q 001112 628 LEKKIDETEKKFEETSK 644 (1154)
Q Consensus 628 l~~~l~ele~~~~e~~~ 644 (1154)
.+.+.+++|++++.++.
T Consensus 74 qQ~kasELEKqLaaLrq 90 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRR 90 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555554433
No 287
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=71.19 E-value=2.2e+02 Score=33.49 Aligned_cols=16 Identities=6% Similarity=0.470 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001112 567 SALQEMQLQFKESKEK 582 (1154)
Q Consensus 567 ~~l~~le~~l~~~~~~ 582 (1154)
++++.+..++++++.+
T Consensus 309 kelE~lR~~L~kAEke 324 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKE 324 (575)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 288
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=71.18 E-value=2.7e+02 Score=34.56 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 522 ETGALQAAKNKLEKQVEELTWRLQL 546 (1154)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~~l~~ 546 (1154)
+-..+++....++.++..|+..+..
T Consensus 190 ~~~~~~~q~~~le~ki~~lq~a~~~ 214 (629)
T KOG0963|consen 190 EEQNLQEQLEELEKKISSLQSAIED 214 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666667777666554443
No 289
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=71.03 E-value=1.2e+02 Score=35.91 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 001112 661 VQLKTAMHRLEEKVSDME 678 (1154)
Q Consensus 661 ~~l~~~~~~Le~~i~~Le 678 (1154)
+++++-++..+.+|.+||
T Consensus 301 Rdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 301 RDIWEVMESCQTRISKLE 318 (395)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345556666677777776
No 290
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=70.85 E-value=1.5e+02 Score=31.47 Aligned_cols=14 Identities=36% Similarity=0.613 Sum_probs=7.8
Q ss_pred HHHHHhHHHHHHHH
Q 001112 498 ITTQCAWRGKVARR 511 (1154)
Q Consensus 498 i~iQ~~~R~~~arr 511 (1154)
|.+.|.-||.+..+
T Consensus 75 VTi~C~ERGlLL~r 88 (189)
T PF10211_consen 75 VTIDCPERGLLLLR 88 (189)
T ss_pred HHhCcHHHhHHHHH
Confidence 44566666665444
No 291
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=70.37 E-value=92 Score=29.16 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 658 SKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.....++.++..++.++..++.++..++
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 292
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=70.37 E-value=2.7e+02 Score=34.32 Aligned_cols=24 Identities=13% Similarity=0.383 Sum_probs=13.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH
Q 001112 892 KQQLAAYVEKI-YGIIRDNLKKELS 915 (1154)
Q Consensus 892 ~q~L~~~~~~i-y~~l~~~~~~~l~ 915 (1154)
.+|+..-+..| |+..+.++.+-+.
T Consensus 552 ~EqvcnWlae~Gl~qY~n~~r~wv~ 576 (861)
T KOG1899|consen 552 SEQVCNWLAEIGLGQYMNEVRRWVR 576 (861)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHh
Confidence 35555555555 6666666555543
No 293
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=70.33 E-value=1.4e+02 Score=34.56 Aligned_cols=110 Identities=20% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Q 001112 533 LEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVE 612 (1154)
Q Consensus 533 LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~e~~~~~ 612 (1154)
+..|+++|-+.|...-. ....|+.+|+.+..+++..+....+..++....++....++... -....+
T Consensus 279 m~tKveelar~Lr~~I~-------~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqae------c~rQ~q 345 (442)
T PF06637_consen 279 MTTKVEELARSLRAGIE-------RVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAE------CARQTQ 345 (442)
T ss_pred HHHHHHHHHHHHhhhHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE 655 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~ 655 (1154)
-.-.|+..|+.+-+.|.+++++.+++++.++.......+.++.
T Consensus 346 laLEEKaaLrkerd~L~keLeekkreleql~~q~~v~~saLdt 388 (442)
T PF06637_consen 346 LALEEKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDT 388 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
No 294
>PTZ00121 MAEBL; Provisional
Probab=70.29 E-value=4.1e+02 Score=36.36 Aligned_cols=14 Identities=7% Similarity=0.368 Sum_probs=5.7
Q ss_pred eEEEeeCcceEEec
Q 001112 184 FTICHYAGDVTYQT 197 (1154)
Q Consensus 184 F~I~H~ag~V~Y~~ 197 (1154)
|+..-.+|..-|+.
T Consensus 777 fG~~GlGGRLGsn~ 790 (2084)
T PTZ00121 777 YGLYGFGGRLGANI 790 (2084)
T ss_pred eeeeccCccccccc
Confidence 44444444443333
No 295
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=69.95 E-value=63 Score=33.82 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 520 ARETGALQAAKNKLEKQVEELTWRLQLEKRMRV----DMEEAKTQENAKLQSALQEMQLQFK 577 (1154)
Q Consensus 520 a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~----~le~~~~~e~~~L~~~l~~le~~l~ 577 (1154)
..++..|.-.+..||.++.++..+++..+.+.. -.|.....++.-|.+....|+++++
T Consensus 191 ~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 191 TTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777788888888888887775443222 1122222444444444444444443
No 296
>PRK10869 recombination and repair protein; Provisional
Probab=69.93 E-value=2.9e+02 Score=34.51 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+..+..|+.+++.++.++..+-.++...|++
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555556655554
No 297
>PRK09343 prefoldin subunit beta; Provisional
Probab=69.92 E-value=1.1e+02 Score=29.90 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 647 ~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.++..+++..+..+..++++.+.++.++.+++..+..+-+
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666677777777777777777666554
No 298
>PRK00295 hypothetical protein; Provisional
Probab=69.80 E-value=32 Score=30.01 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL 670 (1154)
Q Consensus 632 l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~L 670 (1154)
+.++|.+++-.+...+++...+..-++.+..++.++..|
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333333333333333333333333333333
No 299
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=69.38 E-value=6.6 Score=48.09 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=23.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhHHh
Q 001112 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVC 451 (1154)
Q Consensus 424 ~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~ 451 (1154)
.-|.+||+.||.|.+||.|.++|.-+..
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999998875554
No 300
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=69.12 E-value=2.5e+02 Score=33.42 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=11.8
Q ss_pred HHHHhhhhHHHHHHHhHHHHHH
Q 001112 488 LHYMKLKKAAITTQCAWRGKVA 509 (1154)
Q Consensus 488 ~~~~~~~~a~i~iQ~~~R~~~a 509 (1154)
..|+.+.......|++.-++..
T Consensus 302 ek~r~l~~D~nk~~~~~~~mk~ 323 (622)
T COG5185 302 EKWRALKSDSNKYENYVNAMKQ 323 (622)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3455555555566666555443
No 301
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=69.02 E-value=75 Score=33.69 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001112 655 EAESKIVQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 655 ~~e~~~~~l~~~~~~Le~~i~~Le~e 680 (1154)
.....+..++.....+++++.+.+-+
T Consensus 156 ~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 156 AKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555566666655555544
No 302
>PRK00736 hypothetical protein; Provisional
Probab=69.02 E-value=27 Score=30.43 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL 670 (1154)
Q Consensus 632 l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~L 670 (1154)
+.++|.+++-.+...+++...+..-++.+..+++++..|
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333333333333333333333333333333
No 303
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.94 E-value=31 Score=30.09 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=23.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 628 LEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 628 l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+++++.++|.+.+--++.++++...+.+ .+..+..++.++.-|-+++..++.
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laE-------q~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAE-------QQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444555555554444444444444443 333444444444444444444443
No 304
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=68.94 E-value=29 Score=31.85 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001112 526 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT--------------QENAKLQSALQEMQLQFKESKEK 582 (1154)
Q Consensus 526 L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~--------------~e~~~L~~~l~~le~~l~~~~~~ 582 (1154)
.......||..|.+|+.+|+.|...+..++.+.. ....+|-.++.-+|.++..++..
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999999998887554 23344555555555555544443
No 305
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=68.86 E-value=1.5e+02 Score=30.91 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 001112 610 VVEELTSENEKLKTLVSSLEKKID 633 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1154)
....+..+..+|+.+++.++.++.
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554443
No 306
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=68.66 E-value=1.8e+02 Score=31.69 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 001112 664 KTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 664 ~~~~~~Le~~i~~Le~e~~ 682 (1154)
...++++++++.+.+....
T Consensus 165 ~~~fer~e~kiee~ea~a~ 183 (225)
T COG1842 165 MAAFERMEEKIEEREARAE 183 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443
No 307
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=68.64 E-value=49 Score=36.63 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 647 ~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
+....+..++|+++.+...++..|+.++..|+.+|-.|
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555666666666666666666666555
No 308
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=68.60 E-value=76 Score=29.72 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001112 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 648 ~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
.+..+.+..+..+..+++....++.++.+++..+.
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666666666666666654
No 309
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=68.43 E-value=97 Score=30.12 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER---------------LKQALEAESKIVQLKTAMHRLEEKV 674 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~---------------~~~l~~~e~~~~~l~~~~~~Le~~i 674 (1154)
+.+.|..+...+-.+-..++..+.+.++.+.++++.-++. ..-..+++++...++..++.|+.+.
T Consensus 14 q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe 93 (119)
T COG1382 14 QLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQE 93 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555666665555555433221 1113344555556666666666666
Q ss_pred HhHHHHHHHHHHh
Q 001112 675 SDMETENQILRQQ 687 (1154)
Q Consensus 675 ~~Le~e~~~l~qq 687 (1154)
+.++++++.++..
T Consensus 94 ~~l~e~l~eLq~~ 106 (119)
T COG1382 94 EKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHH
Confidence 6666776666653
No 310
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=68.30 E-value=2.1e+02 Score=32.23 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001112 564 KLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS 643 (1154)
Q Consensus 564 ~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~ 643 (1154)
.++.++..-+.++.+++...+.+.....+-...-.+ -++.+..+..++--|++++++...+...-++.+..+.
T Consensus 183 ~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes-------~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ 255 (305)
T PF14915_consen 183 SVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES-------LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQ 255 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 445555555555555555555444444433322211 2567788889999999999998888777777666666
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 644 KISEERLKQALE-AESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 644 ~~~~~~~~~l~~-~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
....+....+.. .++..--+++..++|-.+..-|++.+
T Consensus 256 ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~ 294 (305)
T PF14915_consen 256 DQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERL 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 666555555422 22222223444444444444444333
No 311
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=68.28 E-value=38 Score=40.57 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=43.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 629 EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 629 ~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
..++.++|.+..++..+.++...+++++++.+-+-+.++..|+..|+.-+...+++++++
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 344556666666777777777777777777777777888888888888888888887753
No 312
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=68.22 E-value=1.7 Score=56.06 Aligned_cols=8 Identities=25% Similarity=0.600 Sum_probs=3.7
Q ss_pred HHHHhccc
Q 001112 1069 YRICTLYW 1076 (1154)
Q Consensus 1069 ~kil~~Y~ 1076 (1154)
++|-++|.
T Consensus 656 ~rl~S~ya 663 (722)
T PF05557_consen 656 VRLTSMYA 663 (722)
T ss_dssp EEEEETT-
T ss_pred EEEEeccc
Confidence 45555553
No 313
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=68.21 E-value=92 Score=29.37 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=25.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 623 TLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 623 ~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.++..|+....-+.+..-+-.....++...+...+..+..++.+++.|.=+...|......|+.
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333333333333333444444444444444444444444444333
No 314
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=68.08 E-value=2.1e+02 Score=33.98 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001112 615 TSENEKLKTLVSSLEKK 631 (1154)
Q Consensus 615 ~~e~~kLe~~l~~l~~~ 631 (1154)
..|+..|++++..++++
T Consensus 275 q~Ei~~LKqeLa~~EEK 291 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEK 291 (395)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 34445555555544443
No 315
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.01 E-value=4.7 Score=50.74 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=23.5
Q ss_pred hhccchhhhhhHHHHHHHHHHHHHHHHhhh
Q 001112 418 ESMRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1154)
Q Consensus 418 ~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~ 447 (1154)
+..+++++|++||++||||++|++...+-+
T Consensus 24 e~rk~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 24 EERKQEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 334467899999999999999988776544
No 316
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=67.93 E-value=1.6e+02 Score=34.86 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 660 IVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
.-+.+.++..++.++.--+..++.|++.+
T Consensus 241 ~~~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 241 LIEHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456666666666666666666666644
No 317
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=67.80 E-value=1.3e+02 Score=38.24 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001112 530 KNKLEKQVEELTWRLQ 545 (1154)
Q Consensus 530 ~~~LE~kv~el~~~l~ 545 (1154)
..++++.+..+...|.
T Consensus 177 ~~~~~~~~~~~~~~l~ 192 (670)
T KOG0239|consen 177 SLKLESDLGDLVTELE 192 (670)
T ss_pred HHHHhhhHHHHHHHHH
Confidence 3444555544444443
No 318
>PRK04406 hypothetical protein; Provisional
Probab=67.66 E-value=37 Score=30.19 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 001112 622 KTLVSSLEKKIDETEKKFEETS 643 (1154)
Q Consensus 622 e~~l~~l~~~l~ele~~~~e~~ 643 (1154)
++.+.+|+.++.-.+..++++.
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN 31 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELN 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333
No 319
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=67.56 E-value=1.8e+02 Score=31.25 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 659 KIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 659 ~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
.+..|+..+...+-++..|+..+..-
T Consensus 162 e~~aLqa~lkk~e~~~~SLe~~LeQK 187 (207)
T PF05010_consen 162 ELLALQASLKKEEMKVQSLEESLEQK 187 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444544444555555554443
No 320
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=67.35 E-value=88 Score=33.29 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
+-.|+..+.+++..+...+.....+..........++..+..+.....+..-|++++..++.|+..|+...
T Consensus 33 iv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 33 IVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREEL 103 (202)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHH
Confidence 33344444444444444444444444444433444445555555666666777777777777777777743
No 321
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=67.25 E-value=29 Score=33.02 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
.+.+-.+..+...+..++++++.+-..+.+++....+.. ....++..+...+..++..++.++..+++++..+
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777766666555555444321 1122333444455566666666666666555543
No 322
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=67.22 E-value=3.5e+02 Score=34.42 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDME-EAKTQENAKLQSALQEMQLQFKES 579 (1154)
Q Consensus 525 ~L~~~~~~LE~kv~el~~~l~~e~~~~~~le-~~~~~e~~~L~~~l~~le~~l~~~ 579 (1154)
-|+..+..|.+++.-|.++|.+.++....-- ..-.-|+..|+.-...|+.++.+.
T Consensus 391 plrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es 446 (861)
T PF15254_consen 391 PLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQES 446 (861)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 3445566666777667666664332110000 000123445555555555555544
No 323
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=66.93 E-value=1.4e+02 Score=29.83 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001112 570 QEMQLQFKESKEKLMKEIEVAKKEAEK 596 (1154)
Q Consensus 570 ~~le~~l~~~~~~~~~e~~~~~~~~ee 596 (1154)
++.+.+-.+....+..+.+.++-.+.+
T Consensus 13 ~~Ek~eHaKTK~lLake~EKLqfAlge 39 (153)
T PF15175_consen 13 EEEKAEHAKTKALLAKESEKLQFALGE 39 (153)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 333333333344444444444444443
No 324
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=66.32 E-value=1.6e+02 Score=30.23 Aligned_cols=52 Identities=10% Similarity=0.120 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 634 ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.+..+..+++.....+..-++.++.-+.+..--+.=|...+..+...++.++
T Consensus 102 qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 102 QLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333333333333444444444444444444444444444444443
No 325
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=66.24 E-value=29 Score=31.56 Aligned_cols=62 Identities=18% Similarity=0.360 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
.|++.+++.+.+.+..++..+.++...+- ..+.-..+++++..+.+.+...+++++.|++++
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eL-----------s~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRREL-----------SPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCC-----------ChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 45555555555555555555544432110 011223466788888888888888888888864
No 326
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=66.18 E-value=4.7e+02 Score=35.52 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDET 635 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~el 635 (1154)
...+..+..++..++..+..+...+.++
T Consensus 776 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 803 (1047)
T PRK10246 776 EETLTQLEQLKQNLENQRQQAQTLVTQT 803 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444444433
No 327
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=66.01 E-value=2.7e+02 Score=32.67 Aligned_cols=9 Identities=22% Similarity=0.745 Sum_probs=5.6
Q ss_pred HhHHHHHHH
Q 001112 502 CAWRGKVAR 510 (1154)
Q Consensus 502 ~~~R~~~ar 510 (1154)
.-||.++.+
T Consensus 216 kDWR~hleq 224 (359)
T PF10498_consen 216 KDWRSHLEQ 224 (359)
T ss_pred chHHHHHHH
Confidence 567776543
No 328
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=65.98 E-value=2.1e+02 Score=31.99 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE 657 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e 657 (1154)
+..+..+....+..++++...-..++.++++...+.+...+++..++
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555554443
No 329
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.83 E-value=1e+02 Score=30.35 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 631 KIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 631 ~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
+++.+..++++..+.......++.+....+.+...+++.++..+..|+..+..+
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444555555555555555555444443
No 330
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=65.83 E-value=2.7e+02 Score=32.52 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 513 LRKLKMAARETGALQAAKNKLEKQVE 538 (1154)
Q Consensus 513 l~~lk~~a~~~~~L~~~~~~LE~kv~ 538 (1154)
+.+|..+...+..++.....++..+.
T Consensus 7 L~KL~et~~~V~~m~~~L~~~~~~L~ 32 (344)
T PF12777_consen 7 LDKLKETEEQVEEMQEELEEKQPELE 32 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555444444333
No 331
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.81 E-value=57 Score=39.06 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 001112 661 VQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 661 ~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
.+++.+...++..+..|+..+
T Consensus 119 ~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 119 EQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 332
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.52 E-value=3.2e+02 Score=33.28 Aligned_cols=41 Identities=10% Similarity=0.185 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE 648 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~ 648 (1154)
.+.+..|+.+....+..+.......+++-.-+.+++.++.+
T Consensus 420 ~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnD 460 (654)
T KOG4809|consen 420 ADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKND 460 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34555666666555555444444444443334444444433
No 333
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=64.93 E-value=4.6e+02 Score=34.98 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHH
Q 001112 950 SIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQ 986 (1154)
Q Consensus 950 ~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~ 986 (1154)
..+..+..+-..+...++...+...+..++....|..
T Consensus 740 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 776 (908)
T COG0419 740 KALELLEELREKLGKAGLRADILRNLLAQIEAEANEI 776 (908)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555545555555555555555544
No 334
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=64.60 E-value=3.3e+02 Score=33.12 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
....++.+.+.++..++.++...+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666655544
No 335
>PF13166 AAA_13: AAA domain
Probab=64.52 E-value=4.1e+02 Score=34.23 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+..+..++..+..++..+..++.++..++.+
T Consensus 423 ~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 423 EKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555443
No 336
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=64.39 E-value=3e+02 Score=32.52 Aligned_cols=35 Identities=31% Similarity=0.578 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 503 AWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELT 541 (1154)
Q Consensus 503 ~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~ 541 (1154)
.|++.+.+ .+.+-+.+...|...+..||..+..+.
T Consensus 84 ~Wk~el~~----ele~l~~E~~~L~~~k~rle~~L~~~~ 118 (421)
T KOG2685|consen 84 FWKGELDR----ELEDLAAEIDDLLHEKRRLERALNALA 118 (421)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555443 255555677777777777777766664
No 337
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=64.16 E-value=2.9e+02 Score=32.43 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=6.1
Q ss_pred hhHHHhHHHHHHH
Q 001112 816 AYWLSNTSTLLFL 828 (1154)
Q Consensus 816 ~fWLSN~~~Ll~~ 828 (1154)
-.|=-+..++++-
T Consensus 244 r~Wnvd~~r~~~T 256 (459)
T KOG0288|consen 244 RLWNVDSLRLRHT 256 (459)
T ss_pred eeeeccchhhhhh
Confidence 3454444554443
No 338
>PF14992 TMCO5: TMCO5 family
Probab=64.00 E-value=2.3e+02 Score=31.83 Aligned_cols=9 Identities=22% Similarity=0.387 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001112 634 ETEKKFEET 642 (1154)
Q Consensus 634 ele~~~~e~ 642 (1154)
..++++.++
T Consensus 127 ~qE~ei~kv 135 (280)
T PF14992_consen 127 SQEKEIAKV 135 (280)
T ss_pred HHHHHHHHH
Confidence 333333333
No 339
>PF15294 Leu_zip: Leucine zipper
Probab=63.66 E-value=2.5e+02 Score=31.50 Aligned_cols=132 Identities=17% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Q 001112 521 RETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKE------------KLMKEIE 588 (1154)
Q Consensus 521 ~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~------------~~~~e~~ 588 (1154)
.++.+|++.+.+|.+++..++.+.. ....|..+++.++.+++........ .++....
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at-----------~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a 200 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQAT-----------SALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMA 200 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHH
Q ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 001112 589 VAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ---ALEAESKIVQLKT 665 (1154)
Q Consensus 589 ~~~~~~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~---l~~~e~~~~~l~~ 665 (1154)
.++... +......++..+.|+..+.....++-.....+.-.+++.+..-.. ......-+..-..
T Consensus 201 ~lK~e~-------------ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~ 267 (278)
T PF15294_consen 201 ALKSEL-------------EKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNE 267 (278)
T ss_pred HHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccH
Q ss_pred HHHHHHHHHHh
Q 001112 666 AMHRLEEKVSD 676 (1154)
Q Consensus 666 ~~~~Le~~i~~ 676 (1154)
++++|+.++..
T Consensus 268 QiKeLRkrl~k 278 (278)
T PF15294_consen 268 QIKELRKRLAK 278 (278)
T ss_pred HHHHHHHHhcC
No 340
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.66 E-value=1.9e+02 Score=33.89 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 001112 615 TSENEKLKTLVSSL 628 (1154)
Q Consensus 615 ~~e~~kLe~~l~~l 628 (1154)
+.++..|+++..++
T Consensus 54 E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 54 ELELNRLQEENTQL 67 (459)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 341
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=63.46 E-value=60 Score=30.93 Aligned_cols=70 Identities=27% Similarity=0.282 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+..++.+...++++++.+.+.+.-++.....++..++.++.++...... -..+..++..++.+++..++.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666666555544333322222 344566677777777666663
No 342
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=63.34 E-value=1.2e+02 Score=28.50 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001112 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
.++.+.+.++..|+..+..|.+-..+||....
T Consensus 66 ~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 66 QQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455556666666666666666666665543
No 343
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=63.23 E-value=2.2e+02 Score=31.89 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.6
Q ss_pred cCCCCccChHHHH
Q 001112 304 AGYPTRKPFDEFV 316 (1154)
Q Consensus 304 ~gyp~r~~~~~F~ 316 (1154)
-|||--++.+.|-
T Consensus 3 LGypr~iSmenFr 15 (267)
T PF10234_consen 3 LGYPRLISMENFR 15 (267)
T ss_pred CCCCCCCcHHHcC
Confidence 4999888888875
No 344
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=63.20 E-value=3.5e+02 Score=32.91 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001112 655 EAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 655 ~~e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
....++...+.++..+++++...+..+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666666666666555543
No 345
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=63.10 E-value=1.2e+02 Score=28.90 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 656 ~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+++.+..++..++.++.++..++.++..+++
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544
No 346
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.00 E-value=3.2e+02 Score=32.47 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 518 MAARETGALQAAKNKLEKQVEELTWRLQ 545 (1154)
Q Consensus 518 ~~a~~~~~L~~~~~~LE~kv~el~~~l~ 545 (1154)
.-..-+.+|......+..++.++++.-+
T Consensus 290 dgeayLaKL~~~l~~~~~~~~~ltqqwe 317 (521)
T KOG1937|consen 290 DGEAYLAKLMGKLAELNKQMEELTQQWE 317 (521)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555566666654443
No 347
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=62.99 E-value=21 Score=30.87 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001112 657 ESKIVQLKTAMHRLEEKVSD 676 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~ 676 (1154)
..++..++.++..+++.+..
T Consensus 45 r~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 45 REKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444443
No 348
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=62.84 E-value=2.8e+02 Score=31.65 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001112 653 ALEAESKIVQLKTAMHRLEEKVSD 676 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~ 676 (1154)
++.-+..+.+|+.++.+|..++..
T Consensus 196 l~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 196 LDKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666555554
No 349
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=62.74 E-value=1.9e+02 Score=30.54 Aligned_cols=76 Identities=11% Similarity=0.252 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
.|+.++.-++..+..-+.+...|...+.-....-.+...+-...+.+...|+.+....+.++..|+..+..|+.+.
T Consensus 109 ~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 109 QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444443333333322222333333344555566677777777777777777777777654
No 350
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.64 E-value=89 Score=29.30 Aligned_cols=79 Identities=29% Similarity=0.321 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001112 607 DHAVVEELTSENEKLKTLVSSLEKKIDETE---------KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1154)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele---------~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~L 677 (1154)
.....+.+..+..+|+..++.|+..+..+. +.+..++...+....++.. .+...+..++..|+.+...+
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~--rK~~~l~~~i~~l~~ke~~l 87 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRS--RKDQLLMEQIEELKKKEREL 87 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777776654211 1222222222222222221 22345677888888888888
Q ss_pred HHHHHHHHHh
Q 001112 678 ETENQILRQQ 687 (1154)
Q Consensus 678 e~e~~~l~qq 687 (1154)
++++..|+++
T Consensus 88 ~~en~~L~~~ 97 (100)
T PF01486_consen 88 EEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHH
Confidence 8888888774
No 351
>smart00338 BRLZ basic region leucin zipper.
Probab=62.63 E-value=79 Score=27.04 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 650 ~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
...+.+++.++..|+.++.+|..++..|+.++..++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777778888888888888888888888888764
No 352
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=62.51 E-value=2.8e+02 Score=31.55 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001112 530 KNKLEKQVEELTWRLQLEKR 549 (1154)
Q Consensus 530 ~~~LE~kv~el~~~l~~e~~ 549 (1154)
.+.||++.+.|+++++.+..
T Consensus 141 t~~LEKEReqL~QQiEFe~~ 160 (561)
T KOG1103|consen 141 TAHLEKEREQLQQQIEFEIE 160 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45577777777777775543
No 353
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=62.41 E-value=30 Score=41.34 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001112 633 DETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 633 ~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
.+.+.+.++++++++++..+++...+....++.+++++++++..|+.+++.
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444443333222222222333344444444444444444433
No 354
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=62.36 E-value=3.3e+02 Score=32.47 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001112 642 TSKISEERLKQALEAESKIVQL 663 (1154)
Q Consensus 642 ~~~~~~~~~~~l~~~e~~~~~l 663 (1154)
++++++....++..++....+.
T Consensus 483 LkrEKe~~EqefLslqeEfQk~ 504 (527)
T PF15066_consen 483 LKREKETREQEFLSLQEEFQKH 504 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444333
No 355
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=62.21 E-value=81 Score=26.89 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 652 ~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.+.+++..+..|+.+...|..++..|+.++..|+.+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555566666666666666666666666665543
No 356
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=62.09 E-value=2.6e+02 Score=31.17 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i 674 (1154)
..+..........+.+++..+.+......+.+.........+.+.+.+...+++......+.|
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L 243 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL 243 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555554444444444444444444444444433333
No 357
>PRK02119 hypothetical protein; Provisional
Probab=62.09 E-value=53 Score=29.08 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 001112 621 LKTLVSSLEKKIDETEKKFEETS 643 (1154)
Q Consensus 621 Le~~l~~l~~~l~ele~~~~e~~ 643 (1154)
+++.+.+|+.++.-.+..+.++.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN 29 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELN 29 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 358
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=62.08 E-value=4.1e+02 Score=33.39 Aligned_cols=6 Identities=50% Similarity=0.772 Sum_probs=3.7
Q ss_pred CCCchH
Q 001112 769 GKPVAA 774 (1154)
Q Consensus 769 ~~p~~A 774 (1154)
|.|+++
T Consensus 464 Gv~s~~ 469 (582)
T PF09731_consen 464 GVPSEA 469 (582)
T ss_pred CCCCHH
Confidence 666554
No 359
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=61.47 E-value=1.2e+02 Score=27.01 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 658 SKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.++..++.++..+..++..++.++..++
T Consensus 40 ~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 40 AKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 360
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=60.91 E-value=73 Score=28.38 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1154)
+..++.|.+|+-.|+-.+--|++.+.
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45567777777777777777666655
No 361
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=60.78 E-value=42 Score=29.31 Aligned_cols=32 Identities=16% Similarity=0.350 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 655 ~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
-.+..+..|...+.+...+|..|+.++..|..
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444
No 362
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=60.26 E-value=92 Score=32.27 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~ 676 (1154)
+.+.....-...|+.+++...++...+.+..+..+..+++...+-++...++..+++.++.++.++..
T Consensus 74 ~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k 141 (203)
T KOG3433|consen 74 EAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAK 141 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666666666666555555555544444444444444444444444443333
No 363
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=60.24 E-value=75 Score=30.28 Aligned_cols=30 Identities=7% Similarity=0.305 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001112 654 LEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 654 ~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
.+++..+.+++.+++.+++++..+....+-
T Consensus 68 ~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 68 HDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333
No 364
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=60.22 E-value=1.9e+02 Score=29.22 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 001112 662 QLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
+++..+.+|...+..++.++..+
T Consensus 112 ~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 112 KLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 365
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=60.19 E-value=84 Score=33.24 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 654 ~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
......+..++.++..|+.-+..-+.|++.|+|
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344566677788888888888888888887764
No 366
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=60.18 E-value=73 Score=38.17 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA-ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~-e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+.+..|-.+.+.++.+++.+..+++.+.++.+++.+.......++..+ +..-.+++.+.+.|++++..++..+..|+.
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555554444444444433 233356777777888888888888877766
Q ss_pred h
Q 001112 687 Q 687 (1154)
Q Consensus 687 q 687 (1154)
+
T Consensus 138 ~ 138 (472)
T TIGR03752 138 R 138 (472)
T ss_pred H
Confidence 4
No 367
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=59.52 E-value=2.3e+02 Score=29.77 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 001112 667 MHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 667 ~~~Le~~i~~Le~e~~~l~q 686 (1154)
..+.++.|..|+.||+.||.
T Consensus 155 ~~~~qe~i~qL~~EN~~LRe 174 (181)
T PF05769_consen 155 SQEEQEIIAQLETENKGLRE 174 (181)
T ss_pred hHhHHHHHHHHHHHHHHHHH
Confidence 34566777777888887776
No 368
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=59.46 E-value=70 Score=33.90 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 664 KTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 664 ~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
++++++++.++.+.+.+.+.+++|
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 369
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=59.11 E-value=2e+02 Score=33.93 Aligned_cols=12 Identities=8% Similarity=0.435 Sum_probs=4.8
Q ss_pred HHHHHHHhHHHH
Q 001112 669 RLEEKVSDMETE 680 (1154)
Q Consensus 669 ~Le~~i~~Le~e 680 (1154)
+.++++..++.+
T Consensus 243 ~~~del~Sle~q 254 (447)
T KOG2751|consen 243 EHQDELDSLEAQ 254 (447)
T ss_pred cccchHHHHHHH
Confidence 333444444433
No 370
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=59.04 E-value=1.5e+02 Score=29.57 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 659 ~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
...........-+..|++|..||+.+|.
T Consensus 69 ~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 69 QLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3344555556666778888888888887
No 371
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.02 E-value=2.7e+02 Score=30.37 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 001112 568 ALQEMQLQFKES 579 (1154)
Q Consensus 568 ~l~~le~~l~~~ 579 (1154)
+++++....+++
T Consensus 60 ~~~~~~~~~~k~ 71 (225)
T COG1842 60 KLEEAQARAEKL 71 (225)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 372
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=58.81 E-value=1.2e+02 Score=34.89 Aligned_cols=24 Identities=29% Similarity=0.395 Sum_probs=16.0
Q ss_pred HHHHHHHhhhHHHhHhhhccCCCC
Q 001112 975 IFTQTFSYINVQLFNSLLLRRECC 998 (1154)
Q Consensus 975 ~f~Qlf~~ina~lfN~Ll~r~~~c 998 (1154)
++.|.|-+-|+.++-.+-...+|.
T Consensus 270 f~~~~~q~yn~~~l~~~~~~~~~~ 293 (330)
T PF07851_consen 270 FFGQFFQLYNAYTLFELSYHPECR 293 (330)
T ss_pred HHHHHHHHHHHHHHHHHHcCccch
Confidence 466778777888777765544433
No 373
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.60 E-value=2e+02 Score=32.93 Aligned_cols=64 Identities=14% Similarity=0.272 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~ 675 (1154)
..|.-++..|+..++++++.+.++.+++.+..++.+.+......+..++..++.++...++-|.
T Consensus 108 ~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777777666666666666667777777888888877777773
No 374
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=58.56 E-value=3.6e+02 Score=32.47 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001112 611 VEELTSENEKLKTLVSSL 628 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l 628 (1154)
+..|+.++..++.++..|
T Consensus 288 I~~Le~qLa~~~aeL~~L 305 (434)
T PRK15178 288 IAGFETQLAEAKAEYAQL 305 (434)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 375
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.37 E-value=3.6e+02 Score=31.55 Aligned_cols=152 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhcccccccchh
Q 001112 535 KQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKE--------KLMKEIEVAKKEAEKVPVVQEVPVI 606 (1154)
Q Consensus 535 ~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~--------~~~~e~~~~~~~~ee~~~~~e~~~~ 606 (1154)
.+..++-..+++........-++...+...|+.++.+..++++.+.+ .-+.-..-.+.-.++..+++-....
T Consensus 13 qkrk~~~~a~ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~ 92 (542)
T KOG0993|consen 13 QKRKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKS 92 (542)
T ss_pred HhhhhcccchhhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcC
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 607 -----DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE------TSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1154)
Q Consensus 607 -----e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e------~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~ 675 (1154)
+-.....|+.+...+.+.-+.++.++..+...+.+ ++.+..+....-+.+..-+.-.++++.+|..++.
T Consensus 93 ~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~ 172 (542)
T KOG0993|consen 93 PNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLA 172 (542)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHH
Q 001112 676 DMETENQILRQ 686 (1154)
Q Consensus 676 ~Le~e~~~l~q 686 (1154)
+-++.++.+.+
T Consensus 173 ~aE~~i~El~k 183 (542)
T KOG0993|consen 173 KAEQRIDELSK 183 (542)
T ss_pred hHHHHHHHHHh
No 376
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=57.90 E-value=73 Score=32.69 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~ 647 (1154)
.-++.+...+..|+..+......+..+++.+.+.+...+
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le 58 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALE 58 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777666666666665555444333
No 377
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=57.81 E-value=3.4e+02 Score=33.32 Aligned_cols=145 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcccccccchhhH
Q 001112 532 KLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKES---KEKLMKEIEVAKKEAEKVPVVQEVPVIDH 608 (1154)
Q Consensus 532 ~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~---~~~~~~e~~~~~~~~ee~~~~~e~~~~e~ 608 (1154)
.+|...+++.++++ .+...+..+...++.+...+..| +.....+.-..+...+......+....-+
T Consensus 338 n~e~~~e~~~r~~e-----------~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~ 406 (607)
T KOG0240|consen 338 NLELTAEEWKRKLE-----------KKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSIT 406 (607)
T ss_pred hhHhhHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.....++.+...+++.+..|...+++...+.........++..++.+-+.....-......++.++.+++++++.-+++
T Consensus 407 ~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e 485 (607)
T KOG0240|consen 407 KLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDE 485 (607)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 378
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.64 E-value=13 Score=45.93 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHhhhhhhh
Q 001112 399 RSAIHIQAACRGQLARTV 416 (1154)
Q Consensus 399 ~a~i~IQ~~~Rg~lar~~ 416 (1154)
+|++.||++||||++|++
T Consensus 31 ~aa~~iq~~lrsyl~Rkk 48 (1096)
T KOG4427|consen 31 AAALFIQRVLRSYLVRKK 48 (1096)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555556666555553
No 379
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=57.26 E-value=1e+02 Score=31.55 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=5.8
Q ss_pred HHHHHHHhHHHHHH
Q 001112 669 RLEEKVSDMETENQ 682 (1154)
Q Consensus 669 ~Le~~i~~Le~e~~ 682 (1154)
++++++.+|.++..
T Consensus 120 emQe~i~~L~kev~ 133 (201)
T KOG4603|consen 120 EMQEEIQELKKEVA 133 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 380
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=57.14 E-value=1.5e+02 Score=29.57 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 657 ESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
++.+..++..+..+.+++..+...+..+
T Consensus 107 ~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 107 EKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333
No 381
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.08 E-value=5.5e+02 Score=33.29 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=8.9
Q ss_pred HHHHHhccCcCCCHHH
Q 001112 1052 YDEITNDLCPILSVQQ 1067 (1154)
Q Consensus 1052 ~~~i~~~~c~~Ls~~Q 1067 (1154)
+|=|+.|.-|.+....
T Consensus 641 yD~IIIDtPP~~~~~D 656 (726)
T PRK09841 641 YDLVIVDTPPMLAVSD 656 (726)
T ss_pred CCEEEEeCCCccccch
Confidence 3434456667666533
No 382
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=56.57 E-value=5.7e+02 Score=33.29 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 657 ESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
+.++..|+.+.+..++....+-...+..
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333
No 383
>PRK02793 phi X174 lysis protein; Provisional
Probab=56.22 E-value=69 Score=28.24 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=6.6
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 001112 624 LVSSLEKKIDETEKKFEE 641 (1154)
Q Consensus 624 ~l~~l~~~l~ele~~~~e 641 (1154)
.+.+|+.++.-.+..+++
T Consensus 9 Ri~~LE~~lafQe~tIe~ 26 (72)
T PRK02793 9 RLAELESRLAFQEITIEE 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 384
>PF14992 TMCO5: TMCO5 family
Probab=55.96 E-value=93 Score=34.79 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001112 612 EELTSENEKLKTLV 625 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l 625 (1154)
.+|+.+.++|+...
T Consensus 66 ~~le~e~~~LE~~n 79 (280)
T PF14992_consen 66 QELELETAKLEKEN 79 (280)
T ss_pred HHHHhhhHHHhhhh
Confidence 33444444444333
No 385
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.94 E-value=2.9e+02 Score=29.78 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001112 563 AKLQSALQEMQLQFKESKEK 582 (1154)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~~ 582 (1154)
..++.++++.+....++...
T Consensus 54 ~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 54 KRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 386
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=55.64 E-value=13 Score=34.97 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKI-DETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l-~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.....++.++..++.++++|-..| ++.-+-.+...++.. ..+.+...+++++.+.+..+..++.++..|+.
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~-------~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFEEANKMVADARRERA-------ALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666555 233333333222222 23334444555555555555555556555555
No 387
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=55.35 E-value=2.6e+02 Score=30.79 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=39.3
Q ss_pred CcccHHHHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHhhhHHHhHhh
Q 001112 944 ASSHWQSIIDSLNTLLSTL----KQNFVPPVLVQKIFTQTFSYINVQLFNSL 991 (1154)
Q Consensus 944 ~~~~~~~il~~L~~~~~~l----~~~~v~~~l~~Q~f~Qlf~~ina~lfN~L 991 (1154)
.+.-++.+++.+..+...| +.-.+|+.+..-++..+.++++-.+...+
T Consensus 90 hs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~ 141 (234)
T PF10474_consen 90 HSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGY 141 (234)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455799999999998888 78899999999999999888877765544
No 388
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=55.15 E-value=1.1e+02 Score=34.07 Aligned_cols=21 Identities=14% Similarity=0.389 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 001112 660 IVQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~Le~e 680 (1154)
+.+++.+-.++...+..++..
T Consensus 237 l~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 237 LGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444433333333
No 389
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=54.97 E-value=4.3e+02 Score=31.38 Aligned_cols=167 Identities=19% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q 001112 506 GKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLE-------------------------------------- 547 (1154)
Q Consensus 506 ~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e-------------------------------------- 547 (1154)
+...+..-+.+..+.+.+..++..+..||..+.+-..-+...
T Consensus 129 ~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ 208 (384)
T PF03148_consen 129 ENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNE 208 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHH
Q ss_pred -----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Q 001112 548 -----KRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLK 622 (1154)
Q Consensus 548 -----~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~e~~~~~~L~~e~~kLe 622 (1154)
++.+.....-+..-..-+.....++..+....+..+.......+....++ +....+...++..++
T Consensus 209 ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~L----------e~ql~~~~~ei~~~e 278 (384)
T PF03148_consen 209 NIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNEL----------EWQLKKTLQEIAEME 278 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHhH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 623 TLVSSLEKKID-------------------------------ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 671 (1154)
Q Consensus 623 ~~l~~l~~~l~-------------------------------ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le 671 (1154)
..+..|++.+. .|-.+..++..-...+..++..++..+..|......|+
T Consensus 279 ~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le 358 (384)
T PF03148_consen 279 KNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLE 358 (384)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHH
Q 001112 672 EKVSDMETENQ 682 (1154)
Q Consensus 672 ~~i~~Le~e~~ 682 (1154)
..|.....-+.
T Consensus 359 ~di~~K~~sL~ 369 (384)
T PF03148_consen 359 EDIAVKNNSLF 369 (384)
T ss_pred HHHHHHHHHHH
No 390
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.97 E-value=3.7e+02 Score=34.05 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 660 IVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
++.|...+..|++...+.-+.++.++.
T Consensus 228 l~~L~~~v~~l~~~k~qr~~kl~~l~~ 254 (660)
T KOG4302|consen 228 LDRLDKMVKKLKEEKKQRLQKLQDLRT 254 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443344444433
No 391
>PRK00736 hypothetical protein; Provisional
Probab=54.87 E-value=75 Score=27.70 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=2.5
Q ss_pred HhHHHHH
Q 001112 675 SDMETEN 681 (1154)
Q Consensus 675 ~~Le~e~ 681 (1154)
..|+.++
T Consensus 36 ~~L~~ql 42 (68)
T PRK00736 36 EQMRKKL 42 (68)
T ss_pred HHHHHHH
Confidence 3333333
No 392
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=54.85 E-value=26 Score=43.50 Aligned_cols=135 Identities=19% Similarity=0.056 Sum_probs=70.0
Q ss_pred HHHHHHHhhhcccchhhhchhhhHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHhhhhHHhHHHHHH
Q 001112 378 ASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMR 457 (1154)
Q Consensus 378 a~~IQ~~~R~~~~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~R 457 (1154)
-..||+.++.++.++.-+.-+-.++.+|+.|+|+.-+.+.....-.+--..||.+|+.-.--...-.-...+...|-...
T Consensus 531 Q~~~~k~~~~f~~~~~~R~~~I~i~~~~a~~~~~~w~~~~~~~~~~K~~~~iq~~~~D~~~~n~iS~~~aN~~~~~~~~~ 610 (1023)
T KOG0165|consen 531 QSVIQKAVRHFLLRKKQRKFTIGIIKIQALWRGYSWRKKNDCTKIKKIRLSLQVVNRDIREENKLSKRTANALHYLLTYK 610 (1023)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcccccHHHHHHHHHHHHHhhcccccCcccccceeeecccc
Confidence 45667777777666544444444555666666655444333222222234456666544332221111111111111111
Q ss_pred HH---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHH
Q 001112 458 GM---AARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARREL 513 (1154)
Q Consensus 458 g~---~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arr~l 513 (1154)
.. ..+..+. ..-..++..+|.+.++.-+++.++....+...+|+.+|.+.-+...
T Consensus 611 R~~~~~e~~~~l-~~~~~~~~~~~~n~~~~~a~sie~~~~~~~~~Lr~~~~~~~i~~~I 668 (1023)
T KOG0165|consen 611 RLSAILEALKHL-EVVTRLSPLCCENMAQSGAISIEKIFVLIRSCLRSIPCMEVIRYAI 668 (1023)
T ss_pred chhhhhhhHHHh-hHHHHhhHHHhhhhhhhchhhHHHHHHHHHhhhccchHHHHHHHHH
Confidence 10 0111111 1224577889999999999988887777777888888877665443
No 393
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.11 E-value=3.6e+02 Score=32.95 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 661 ~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
..|..+++.++..+.+++..++.|.+
T Consensus 518 ~~L~~ElE~~~~~~~~~e~~~evL~~ 543 (852)
T KOG4787|consen 518 IDLVSELEGKIPTIDEIEQCCEVLAA 543 (852)
T ss_pred HHHHHHHHhhcCcHhHHHHHHHHHHH
Confidence 56777777777778888888888876
No 394
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=53.92 E-value=2.7e+02 Score=33.90 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=10.6
Q ss_pred hhhcchhhhcCCCCC
Q 001112 142 IIALLDEACMFPRST 156 (1154)
Q Consensus 142 il~lLdee~~~p~~t 156 (1154)
.+-.|+|||..+..|
T Consensus 106 ~~~s~eee~~~s~ct 120 (518)
T PF10212_consen 106 QLKSLEEECESSLCT 120 (518)
T ss_pred HHHHHHhhcccccch
Confidence 455678888887665
No 395
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=53.80 E-value=3e+02 Score=29.29 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------------------------HHHHHHHHHHHHHHHH
Q 001112 521 RETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT-------------------------QENAKLQSALQEMQLQ 575 (1154)
Q Consensus 521 ~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~-------------------------~e~~~L~~~l~~le~~ 575 (1154)
+.++.|+.+...|.. ..+.|.+.|.+.|..+|.... ....+-++++-.|+.+
T Consensus 3 ekv~~LQ~AL~~LQa---a~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad 79 (205)
T PF12240_consen 3 EKVERLQQALAQLQA---ACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEAD 79 (205)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccchhhHHH--HHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001112 576 FKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAV--VEELTSENE----KLKTLVSSLEKKIDETEKKFEETSKISEER 649 (1154)
Q Consensus 576 l~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~e~~~--~~~L~~e~~----kLe~~l~~l~~~l~ele~~~~e~~~~~~~~ 649 (1154)
+.+|+.+--+|..-.+-..+... ....+.+. +++-..... +-.+++-....+..++|.++..+...+.+.
T Consensus 80 ~~kWEqkYLEEs~mrq~a~dAaa----~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI~EK 155 (205)
T PF12240_consen 80 MTKWEQKYLEESAMRQFAMDAAA----TAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQIAEK 155 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 001112 650 LKQALEAESK 659 (1154)
Q Consensus 650 ~~~l~~~e~~ 659 (1154)
...+..++..
T Consensus 156 DAmIkVLQqr 165 (205)
T PF12240_consen 156 DAMIKVLQQR 165 (205)
T ss_pred HHHHHHHHhh
No 396
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=53.55 E-value=2.1e+02 Score=30.89 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 507 KVARRELRKLKMAARETGALQAAKNKLEKQVEELT 541 (1154)
Q Consensus 507 ~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~ 541 (1154)
+..||.++..-.+.....+-++...++|-.+.+|+
T Consensus 69 K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~ 103 (292)
T KOG4005|consen 69 KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLT 103 (292)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33444444333332222233334455555555554
No 397
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=53.49 E-value=5e+02 Score=31.75 Aligned_cols=7 Identities=43% Similarity=0.463 Sum_probs=2.9
Q ss_pred hhhhhhc
Q 001112 286 VLQQLRC 292 (1154)
Q Consensus 286 v~~QLr~ 292 (1154)
...|+|.
T Consensus 25 t~~~i~~ 31 (489)
T PF05262_consen 25 TAQQIRG 31 (489)
T ss_pred HHHHHHH
Confidence 3444443
No 398
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=53.30 E-value=2e+02 Score=28.72 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 654 ~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
...++++..+++.++.++..+..++++++.+++.
T Consensus 97 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 130 (140)
T PRK03947 97 EILDKRKEELEKALEKLEEALQKLASRIAQLAQE 130 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666666666666655553
No 399
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.24 E-value=2.3e+02 Score=36.95 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=7.6
Q ss_pred cccc-ceeeeecccc
Q 001112 350 QIGK-TKVFLRAGQM 363 (1154)
Q Consensus 350 qiG~-TkVFlr~~~~ 363 (1154)
.+|- .+||.+-|.-
T Consensus 367 ~i~~~~~i~~~ig~~ 381 (782)
T PRK00409 367 EIPVFKEIFADIGDE 381 (782)
T ss_pred cccccceEEEecCCc
Confidence 4554 5666655543
No 400
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=52.87 E-value=5.1e+02 Score=31.60 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1154)
++.+..+...+..|...+..+..+++
T Consensus 350 e~sv~~l~~~lkDLd~~~~aLs~rld 375 (531)
T PF15450_consen 350 EDSVAELMRQLKDLDDHILALSWRLD 375 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34445555555666666555555554
No 401
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=52.83 E-value=21 Score=29.71 Aligned_cols=30 Identities=37% Similarity=0.591 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 659 KIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 659 ~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
++.-|++++.+|++++..|+.||..|++.+
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455688899999999999999999999843
No 402
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=52.69 E-value=27 Score=39.78 Aligned_cols=77 Identities=16% Similarity=0.248 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+..+...+..++..++++...+..+...+.........+...+....-.+.+++..+..+.-.|..|+..++.++..
T Consensus 79 L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 79 LNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 34444444555555555555555555555555555555566666666777778888888888888888888888874
No 403
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=51.88 E-value=5.6e+02 Score=31.83 Aligned_cols=8 Identities=25% Similarity=0.816 Sum_probs=5.0
Q ss_pred cccceeee
Q 001112 351 IGKTKVFL 358 (1154)
Q Consensus 351 iG~TkVFl 358 (1154)
=|+|+.|+
T Consensus 99 ~GrSr~~I 106 (557)
T COG0497 99 DGRSRAFI 106 (557)
T ss_pred CCceeEEE
Confidence 35666666
No 404
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=51.86 E-value=7.3e+02 Score=33.14 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 652 ~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.+...+.....++..+...++.+..++..+..++
T Consensus 411 ~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (908)
T COG0419 411 ELEELEKELEELERELEELEEEIKKLEEQINQLE 444 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444445555555555555554443
No 405
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=51.82 E-value=5e+02 Score=31.23 Aligned_cols=8 Identities=38% Similarity=0.434 Sum_probs=4.0
Q ss_pred ccceeeee
Q 001112 352 GKTKVFLR 359 (1154)
Q Consensus 352 G~TkVFlr 359 (1154)
+.+.|++.
T Consensus 41 a~a~l~v~ 48 (444)
T TIGR03017 41 ATTSVVLD 48 (444)
T ss_pred EEEEEEEe
Confidence 45555553
No 406
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=51.70 E-value=1.1e+02 Score=36.86 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 638 ~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
+..++.-+..-+..+++..+....++++++.+|+++|..++.|....|+++
T Consensus 330 kVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~ 380 (832)
T KOG2077|consen 330 KVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKA 380 (832)
T ss_pred HHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444344444444444444445666666666666666666666666543
No 407
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.69 E-value=2.8e+02 Score=36.19 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=7.2
Q ss_pred CcceEE-eccchhhhcch
Q 001112 190 AGDVTY-QTELFLDKNKD 206 (1154)
Q Consensus 190 ag~V~Y-~~~~fl~kN~d 206 (1154)
.|...| ....+++-|..
T Consensus 213 sg~t~~~ep~~~~~ln~~ 230 (771)
T TIGR01069 213 SGETFYIEPQAIVKLNNK 230 (771)
T ss_pred CCCEEEEEcHHHHHHHHH
Confidence 343333 33335555543
No 408
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=51.00 E-value=1.8e+02 Score=27.26 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001112 653 ALEAESKIVQLKTAMHRLEEKVS 675 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~ 675 (1154)
+..++..+..|..-..+|+.++.
T Consensus 75 V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 75 VTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444444443
No 409
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=50.39 E-value=3.5e+02 Score=28.95 Aligned_cols=8 Identities=25% Similarity=0.298 Sum_probs=2.9
Q ss_pred HHhHHHHH
Q 001112 674 VSDMETEN 681 (1154)
Q Consensus 674 i~~Le~e~ 681 (1154)
+...+.++
T Consensus 122 l~~~~~e~ 129 (201)
T PF12072_consen 122 LEEREEEL 129 (201)
T ss_pred HHHHHHHH
Confidence 33333333
No 410
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.20 E-value=5.8e+02 Score=31.49 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=13.2
Q ss_pred HHHHHHhhhhHHhHHHHHHHHHHHH
Q 001112 439 KKAYKDMCFSAVCIQTGMRGMAARN 463 (1154)
Q Consensus 439 Rk~y~~~r~a~i~iQs~~Rg~~aR~ 463 (1154)
|+.+..++.-+...|++..++..++
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~ 289 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKK 289 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 4444555555555555555555443
No 411
>PLN03188 kinesin-12 family protein; Provisional
Probab=50.19 E-value=8.3e+02 Score=33.30 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=5.2
Q ss_pred cccccccCCcc
Q 001112 69 IGVLDIYGFES 79 (1154)
Q Consensus 69 IgvLDi~GFE~ 79 (1154)
|.++|..|-|.
T Consensus 331 LnLVDLAGSER 341 (1320)
T PLN03188 331 INLVDLAGSER 341 (1320)
T ss_pred EEEEECCCchh
Confidence 44445555443
No 412
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=50.17 E-value=3.6e+02 Score=29.05 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+.+..+-.+...|+.....|+.....|++
T Consensus 169 ~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 169 RKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555544
No 413
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.16 E-value=1.5e+02 Score=36.77 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1154)
+.+.+|++++..++.++..++.++..++..+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544444433
No 414
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=49.99 E-value=1.4e+02 Score=34.31 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQL 663 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l 663 (1154)
+.++|+++-.+|++......++++++.+-............+++.++.+.+.++
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666555554444444444444444444444444
No 415
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=49.55 E-value=26 Score=36.07 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 001112 661 VQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 661 ~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
..|..++++|++++.+|+.|+
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457777778888888888887
No 416
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=48.86 E-value=1.7e+02 Score=24.92 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001112 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 646 ~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
..++...+..++.....|..++..|+.++..|..+++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444555555555666666666666666666653
No 417
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=48.80 E-value=3.9e+02 Score=29.06 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
..-+..|+.....++..+..++++++++...+..... +...++..++.+...+-..+-+++..+..|+.|+..++++
T Consensus 135 ~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~---~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 135 LIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQE---EAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666555555443332221 1223344556666666666666666666666666666554
No 418
>PHA02414 hypothetical protein
Probab=48.65 E-value=1.6e+02 Score=27.19 Aligned_cols=48 Identities=27% Similarity=0.256 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 634 ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
+++...+++..-.-.+.+.+.--.++.+.+--++.+|++.++.|.+-+
T Consensus 33 eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n 80 (111)
T PHA02414 33 ELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESN 80 (111)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhcc
Confidence 344444444333333333333334444555666666666666665544
No 419
>PRK00846 hypothetical protein; Provisional
Probab=48.62 E-value=1.6e+02 Score=26.48 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=5.2
Q ss_pred HHHHHHHHHhHHHH
Q 001112 667 MHRLEEKVSDMETE 680 (1154)
Q Consensus 667 ~~~Le~~i~~Le~e 680 (1154)
+..|+.++..|.+.
T Consensus 43 I~~L~~ql~~L~~r 56 (77)
T PRK00846 43 GARNAELIRHLLED 56 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 420
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.54 E-value=4.3e+02 Score=34.55 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=4.2
Q ss_pred eccchhhhcc
Q 001112 196 QTELFLDKNK 205 (1154)
Q Consensus 196 ~~~~fl~kN~ 205 (1154)
.....++-|.
T Consensus 225 ep~~~~~ln~ 234 (782)
T PRK00409 225 EPQSVVELNN 234 (782)
T ss_pred EcHHHHHHHH
Confidence 3333444444
No 421
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=48.36 E-value=86 Score=28.30 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 649 ~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+..++..++..+..|-..+...+++..+|+.||+.|++
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555555555
No 422
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=48.23 E-value=88 Score=37.64 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
-+.+-++..+..++..++++|+.+..++.+++....+..+ ..+++..+...+.++++.+++++..+++++..+-
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE----DAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777776666666654222211 1223334445566666666666666666655543
No 423
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=48.23 E-value=5.4e+02 Score=30.66 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q 001112 906 IRDNLKKELSSLLSLCI 922 (1154)
Q Consensus 906 l~~~~~~~l~~~L~~~i 922 (1154)
+++++...|..+|.+.+
T Consensus 434 VRK~l~~alr~Ll~HGl 450 (621)
T KOG3759|consen 434 VRKELCVALRDLLAHGL 450 (621)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44555666777776654
No 424
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=47.97 E-value=94 Score=37.72 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
+..+......+.+++++|++++..|+++++..
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445556666666666666666666555
No 425
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.65 E-value=1.1e+02 Score=34.80 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhccCCCeeeeecC
Q 001112 248 FKQQLQQLLETLSSSEPHYIRCVK 271 (1154)
Q Consensus 248 f~~sl~~L~~~l~~t~~hfirCik 271 (1154)
.-.-+..||.++....|-|-+-+-
T Consensus 124 Lv~Liq~l~a~f~~~pP~ys~~~~ 147 (365)
T KOG2391|consen 124 LVGLIQELIAAFSEDPPVYSRSLP 147 (365)
T ss_pred HHHHHHHHHHHhcCCCccccCCCC
Confidence 334455666666667766665443
No 426
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=47.33 E-value=65 Score=29.60 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 659 KIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 659 ~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+...+-.++.-++.+|..||..+..|..+
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666666555543
No 427
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=47.20 E-value=9.3e+02 Score=33.01 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001112 523 TGALQAAKNKLEKQVEELTWRLQ 545 (1154)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~~l~ 545 (1154)
+..-++...++|+++.+.+.++.
T Consensus 232 i~~~ke~v~e~e~e~~~~~~~i~ 254 (1294)
T KOG0962|consen 232 IEKSKEEVSELENELGPIEAKIE 254 (1294)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 33344444555555555554444
No 428
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.14 E-value=2.7e+02 Score=30.02 Aligned_cols=75 Identities=13% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
..+--...+.-+.+.+.|.+.+.+.+.++.+..+...+......-.++.+...+.+++.|...++.+++|....+
T Consensus 46 ~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~k 120 (246)
T KOG4657|consen 46 LVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSK 120 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
No 429
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=46.95 E-value=4.3e+02 Score=29.02 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001112 607 DHAVVEELTSENEKLKTLVSSLEKKID 633 (1154)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1154)
.......|..+...++.++..++..+.
T Consensus 148 ~~a~~~~l~ae~~~l~~~~~~le~el~ 174 (240)
T PF12795_consen 148 SEAQRWLLQAELAALEAQIEMLEQELL 174 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666555554443
No 430
>PLN02678 seryl-tRNA synthetase
Probab=46.68 E-value=99 Score=37.37 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+++-.+..+..++..++++++.+..++-+++..+.... ....++.++...+.+++..+++++..+++++..+-.
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~----~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK----EDATELIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677777777766666655554422111 112233344556666777777777777777665443
No 431
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=46.58 E-value=72 Score=29.08 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETE---KKFEETSKISEERLKQALEAE 657 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele---~~~~e~~~~~~~~~~~l~~~e 657 (1154)
+++.+++..+.....++..+.++...+ +....++++...+...+..-+
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E 56 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNE 56 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccH
Confidence 466777777778888888877776321 233444444444444443333
No 432
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=46.30 E-value=2.4e+02 Score=25.99 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 636 EKKFEETSKISEERLKQALEAESKIVQLKTAMHR 669 (1154)
Q Consensus 636 e~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~ 669 (1154)
+.++..+......+..++...+.....|+.-..+
T Consensus 38 e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~E 71 (89)
T PF13747_consen 38 EEEIQRLDADRSRLAQELDQAEARANRLEEANRE 71 (89)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333344444444444333333333333
No 433
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=46.23 E-value=2.9e+02 Score=29.90 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+.....|-.+..+|..+++.+.+++.+++++
T Consensus 117 r~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 117 RAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 3333444455555556666666666666553
No 434
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=45.84 E-value=3.9e+02 Score=28.30 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMH 668 (1154)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~ 668 (1154)
...|+..+...+..+...+.-......+..+....++.++..+..|.+.+.
T Consensus 111 ~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~ 161 (188)
T PF05335_consen 111 LETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQ 161 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443334443333333334444433333333333
No 435
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.81 E-value=2.4e+02 Score=31.25 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKI 632 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l 632 (1154)
..+.-..++.++.++...+||+++
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~el 102 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEEL 102 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666555555544433
No 436
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=45.71 E-value=3.1e+02 Score=27.08 Aligned_cols=11 Identities=9% Similarity=0.534 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 001112 569 LQEMQLQFKES 579 (1154)
Q Consensus 569 l~~le~~l~~~ 579 (1154)
+..++.+.+.+
T Consensus 29 l~~LEae~q~L 39 (126)
T PF09403_consen 29 LNQLEAEYQQL 39 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 437
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=45.38 E-value=2.2e+02 Score=25.33 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 001112 615 TSENEKLKTLVSSLEKKIDETEKKF 639 (1154)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1154)
+..+++|+.+.=+|+-++--+++.+
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l 30 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERL 30 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 438
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=44.89 E-value=1e+03 Score=32.72 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCHHH
Q 001112 947 HWQSIIDSLNTLLSTLKQNFVPPVL 971 (1154)
Q Consensus 947 ~~~~il~~L~~~~~~l~~~~v~~~l 971 (1154)
...++...|..+... +.++++-.+
T Consensus 1224 niesLa~~L~~II~~-rr~q~nfqL 1247 (1294)
T KOG0962|consen 1224 NIESLAKALSRIIEE-RRRQRNFQL 1247 (1294)
T ss_pred HHHHHHHHHHHHHHH-HhhccCcce
Confidence 455666666666543 345555433
No 439
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=44.70 E-value=89 Score=35.13 Aligned_cols=65 Identities=23% Similarity=0.336 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001112 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~L 677 (1154)
.|..|+..|-=+++-|+..|.+.+..+.+...+++++.+.++-....++-|+...++|++.|..-
T Consensus 137 QLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR 201 (405)
T KOG2010|consen 137 QLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR 201 (405)
T ss_pred hhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566677777777888888888888888877777777777887777777766553
No 440
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.54 E-value=1.1e+02 Score=29.39 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 660 IVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+..++..+.+|-++...|+-||+.||.
T Consensus 24 ~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555554
No 441
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=44.46 E-value=7.3e+02 Score=31.04 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 001112 654 LEAESKIVQLKTAMHRLEEKVSDM 677 (1154)
Q Consensus 654 ~~~e~~~~~l~~~~~~Le~~i~~L 677 (1154)
+.+++++.++++++..+-.++...
T Consensus 349 e~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 349 EALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 442
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=44.18 E-value=5.1e+02 Score=33.52 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHH
Q 001112 893 QQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLV 972 (1154)
Q Consensus 893 q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~ 972 (1154)
+.+...+...-...++.+-..+..+|. -|-+....|... .......++.....++.+|+.++..++.+-=
T Consensus 530 ~~le~~v~~gL~~~i~~l~~~v~~iL~--~Qkk~Df~p~~~---~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~----- 599 (710)
T PF07393_consen 530 SRLEEKVNAGLNKGIDVLMNWVEFILS--EQKKTDFKPKED---DLSLDQQPTPACQEVVEFLERHCSLLKGSLD----- 599 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCCcc---ccccccCCCHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 444444444444455555555555554 343333333111 0011234667889999999999999886532
Q ss_pred HHHHHHHHHhhhHHHhHhhhc--cCCCCCCchhHHHhhchHHHHHHHhhcccccccchHHHhHHHHHHHhHHhhcccccC
Q 001112 973 QKIFTQTFSYINVQLFNSLLL--RRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRI 1050 (1154)
Q Consensus 973 ~Q~f~Qlf~~ina~lfN~Ll~--r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~ 1050 (1154)
.......+.=|+..+|+.|+. .+--.|..=|+++..=|....+++.+-+ .......++-|.+.++|+.++ ..
T Consensus 600 ~~nl~~f~~elg~~l~~~l~~h~kk~~vs~~Gg~~l~~Dl~~Y~~~~~~~~---~~~v~~~F~~L~~l~nl~~v~---~~ 673 (710)
T PF07393_consen 600 GSNLDVFLQELGERLHRLLLKHLKKFTVSSTGGLQLIKDLNEYQDFIRSWG---IPSVDEKFEALKELGNLFIVD---PE 673 (710)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCccCchhHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHhheeec---HH
Confidence 223344444566666666665 3556677899999999999999999865 345668899999999999984 23
Q ss_pred CHHHHHhccC-cCCCHHHHHHHHhc
Q 001112 1051 SYDEITNDLC-PILSVQQLYRICTL 1074 (1154)
Q Consensus 1051 ~~~~i~~~~c-~~Ls~~Ql~kil~~ 1074 (1154)
++.+++.+.+ +.+++..|+..+..
T Consensus 674 ~l~~~~~~~~~~~~~~~~i~~fi~~ 698 (710)
T PF07393_consen 674 NLKELCREGQLGRFSPEEIYEFIQR 698 (710)
T ss_pred HHHHHHhhccccCCCHHHHHHHHHH
Confidence 4445544443 35566666655543
No 443
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=44.14 E-value=3.2e+02 Score=31.85 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 001112 613 ELTSENEKLKTLVSSLEKKID 633 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ 633 (1154)
.|..++.+|+.+...+.++++
T Consensus 148 ~L~~enerL~~e~~~~~~qlE 168 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLE 168 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 444
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=44.04 E-value=2.6e+02 Score=25.76 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e 641 (1154)
..++.|....++|.++++..+.....++....+
T Consensus 39 ~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~E 71 (89)
T PF13747_consen 39 EEIQRLDADRSRLAQELDQAEARANRLEEANRE 71 (89)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344555566666666555555544444443333
No 445
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=43.83 E-value=1.9e+02 Score=35.77 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 654 ~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.++......++.+++++++++..++.++..+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 141 ERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444555555555556666655555543
No 446
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.83 E-value=4.8e+02 Score=34.07 Aligned_cols=6 Identities=33% Similarity=0.600 Sum_probs=2.2
Q ss_pred HHHhhc
Q 001112 9 DSLCKR 14 (1154)
Q Consensus 9 ~~l~~r 14 (1154)
..+..+
T Consensus 16 ~~l~~~ 21 (771)
T TIGR01069 16 ENLLKQ 21 (771)
T ss_pred HHHHHH
Confidence 333333
No 447
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=43.70 E-value=19 Score=41.95 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 001112 424 ASCLRIQRDLRMYLAKKAYK 443 (1154)
Q Consensus 424 ~AAi~IQ~~~R~~~~Rk~y~ 443 (1154)
+||+.||+|+|+|.+|...+
T Consensus 18 kaAilIQkWYRr~~ARle~r 37 (631)
T KOG0377|consen 18 KAAILIQKWYRRYEARLEAR 37 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57889999999998887654
No 448
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=43.62 E-value=35 Score=32.14 Aligned_cols=7 Identities=29% Similarity=0.026 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001112 643 SKISEER 649 (1154)
Q Consensus 643 ~~~~~~~ 649 (1154)
+.+.+++
T Consensus 21 e~ElEeL 27 (100)
T PF06428_consen 21 ESELEEL 27 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 449
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=43.49 E-value=2.8e+02 Score=25.89 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1154)
.+...|..++.+..+.+-+.....+.+..
T Consensus 31 ~k~~rl~~Ek~kadqkyfa~mr~~d~l~~ 59 (96)
T PF08647_consen 31 QKKLRLEAEKAKADQKYFAAMRSKDALDN 59 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444555555555554444444444433
No 450
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.34 E-value=6.8e+02 Score=30.32 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=5.7
Q ss_pred CCCchhHHHhhc
Q 001112 998 CTFSNGEYVKAG 1009 (1154)
Q Consensus 998 cs~s~G~qIr~n 1009 (1154)
|.-+.|+++.+-
T Consensus 555 ~~~~~g~~lql~ 566 (613)
T KOG0992|consen 555 CVIMDGVNLQLS 566 (613)
T ss_pred CcccCcchHHHH
Confidence 444555444443
No 451
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=43.20 E-value=3e+02 Score=26.22 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
...+..++..+.+++++..+.++.+..+++.+
T Consensus 82 ~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~ 113 (120)
T KOG3478|consen 82 SKEIKRLENQIRDSQEEFEKQREAVIKLQQAA 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555556666666666666544
No 452
>PRK11546 zraP zinc resistance protein; Provisional
Probab=43.08 E-value=1.5e+02 Score=29.90 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
++-..+.+-.++...+..+|++++-. ...+...+...-...++++..+.+|+.+|+.++.++..+....
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~a-------Kr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~ 115 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVS-------KRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIA 115 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555443332 2222222222223346778888888888888888777665543
No 453
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=42.40 E-value=4.2e+02 Score=27.65 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 557 AKTQENAKLQSALQEMQLQFKESKEKLMKE 586 (1154)
Q Consensus 557 ~~~~e~~~L~~~l~~le~~l~~~~~~~~~e 586 (1154)
..+.+...++.+.+.++.++++++.++..+
T Consensus 70 ~~k~~~~~lr~~~e~L~~eie~l~~~L~~e 99 (177)
T PF07798_consen 70 SRKSEFAELRSENEKLQREIEKLRQELREE 99 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554333
No 454
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=42.30 E-value=1.6e+02 Score=35.57 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 001112 662 QLKTAMHRLEEKVSDMET 679 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le~ 679 (1154)
.|+.+++..+-..+++.+
T Consensus 132 ~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 132 ALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 333344333333333333
No 455
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=41.97 E-value=3.3e+02 Score=26.59 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+.....+++++..|+.++.....+++.|+..
T Consensus 87 Ee~ke~l~k~i~~les~~e~I~~~m~~LK~~ 117 (131)
T KOG1760|consen 87 EEKKETLEKEIEELESELESISARMDELKKV 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777777777653
No 456
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=41.71 E-value=3.9e+02 Score=27.08 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~ 644 (1154)
+.++-|.+.+++|+.....++..+.++..+...+..
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~ 129 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQ 129 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444444444444333
No 457
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=40.77 E-value=1.3e+02 Score=28.89 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 658 SKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.++..++..+.+|-++...|+-||+.||.
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555554
No 458
>PRK11519 tyrosine kinase; Provisional
Probab=40.74 E-value=9.3e+02 Score=31.18 Aligned_cols=12 Identities=42% Similarity=0.539 Sum_probs=6.1
Q ss_pred HHhccCcCCCHH
Q 001112 1055 ITNDLCPILSVQ 1066 (1154)
Q Consensus 1055 i~~~~c~~Ls~~ 1066 (1154)
|+.|..|.+...
T Consensus 639 ViiDtpP~~~v~ 650 (719)
T PRK11519 639 VLIDTPPILAVT 650 (719)
T ss_pred EEEeCCCcccch
Confidence 444666655443
No 459
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.72 E-value=4.6e+02 Score=27.63 Aligned_cols=14 Identities=21% Similarity=0.088 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 001112 475 ILIQSHCRKYLARL 488 (1154)
Q Consensus 475 ~~IQ~~~R~~~~r~ 488 (1154)
...|...|.+.+.|
T Consensus 89 ~~~~~~~~~fraQR 102 (192)
T PF05529_consen 89 TEDQVLAKKFRAQR 102 (192)
T ss_pred hhHHHHHHHHHHHH
Confidence 44555555554443
No 460
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=40.70 E-value=1.2e+02 Score=25.27 Aligned_cols=8 Identities=13% Similarity=0.385 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001112 616 SENEKLKT 623 (1154)
Q Consensus 616 ~e~~kLe~ 623 (1154)
.+..+++.
T Consensus 7 n~~~~~~~ 14 (55)
T PF05377_consen 7 NELPRIES 14 (55)
T ss_pred HHHHHHHH
Confidence 33333333
No 461
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=40.29 E-value=8.8e+02 Score=30.77 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDE 634 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~e 634 (1154)
+.++.|.++.+.|...++-|.-.+..
T Consensus 249 ~tVq~L~edR~~L~~T~ELLqVRvqS 274 (739)
T PF07111_consen 249 ETVQHLQEDRDALQATAELLQVRVQS 274 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555555555443
No 462
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=40.17 E-value=3.5e+02 Score=26.14 Aligned_cols=28 Identities=14% Similarity=0.399 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 658 SKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
+++..+++.+..++..+..++.++..++
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 463
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=40.07 E-value=3.1e+02 Score=26.57 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001112 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 652 ~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
+++..++.+..+++++..++.++..++..+..
T Consensus 95 r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 95 RLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555443
No 464
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=40.01 E-value=30 Score=25.81 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHH
Q 001112 425 SCLRIQRDLRMYLAKKA 441 (1154)
Q Consensus 425 AAi~IQ~~~R~~~~Rk~ 441 (1154)
||..||-+||.|.+|+.
T Consensus 11 At~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 11 ATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78899999999988875
No 465
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=39.99 E-value=3e+02 Score=32.10 Aligned_cols=7 Identities=29% Similarity=0.373 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001112 660 IVQLKTA 666 (1154)
Q Consensus 660 ~~~l~~~ 666 (1154)
|+.|+..
T Consensus 196 IR~lq~~ 202 (342)
T PF06632_consen 196 IRELQRL 202 (342)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 466
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=39.98 E-value=7.8e+02 Score=30.05 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=6.1
Q ss_pred HHHHHHHhHHHHHHHH
Q 001112 625 VSSLEKKIDETEKKFE 640 (1154)
Q Consensus 625 l~~l~~~l~ele~~~~ 640 (1154)
+.=+++.++..++++.
T Consensus 142 l~Pl~e~l~~f~~~v~ 157 (475)
T PRK10361 142 LSPLREQLDGFRRQVQ 157 (475)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3333333333333333
No 467
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=39.87 E-value=9.6 Score=46.00 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 519 AARETGALQAAKNKLEKQVEELTWRLQ 545 (1154)
Q Consensus 519 ~a~~~~~L~~~~~~LE~kv~el~~~l~ 545 (1154)
-++|+..|++......++++|.+.+|.
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl 400 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLL 400 (495)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666666665554
No 468
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=39.85 E-value=6.1e+02 Score=28.81 Aligned_cols=124 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001112 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVP 598 (1154)
Q Consensus 519 ~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~ 598 (1154)
+..-....-..+..+++.+......|. ...++++..+.+.+.++.+...+....
T Consensus 174 a~evL~~fl~~~~~~~~~ilq~d~~L~-----------~~ek~~~~~~~k~e~~e~e~~~l~e~~--------------- 227 (297)
T PF02841_consen 174 AEEVLQEFLQSKESMENSILQADQQLT-----------EKEKEIEEEQAKAEAAEKEKEKLEEKQ--------------- 227 (297)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH-TTS------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001112 599 VVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1154)
Q Consensus 599 ~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le 678 (1154)
......++.....+++.+..|.+++++......+ +.+..-..+..+..+-.....+.+...|+.+|..|+
T Consensus 228 ---------~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~-e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 228 ---------KEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQ-EQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 469
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.85 E-value=3e+02 Score=28.70 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.+.+...+.-+.+|+..++...++...+....+......+..++...++..++..|+..++.++.++...+
T Consensus 73 s~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 73 SEAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 470
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=39.39 E-value=2.7e+02 Score=24.53 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 620 KLKTLVSSLEKKID-ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 620 kLe~~l~~l~~~l~-ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
.|+.++...-+.+. +-+++..+.+....++...+.........|...+..|..++..|.+.++.|
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 471
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=39.35 E-value=2.9e+02 Score=24.92 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
.+.++.+..|...+-.++...+..-++.+.++..-..+.......+-+++..-.+++..- +++|..|+.+++.
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~ 75 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
No 472
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=39.34 E-value=3e+02 Score=25.12 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER-LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~-~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+..+......+...-..|...++.+..++.+......-. .-.+..-..++..+++.+..+.+.+.+++.....+++
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~q 92 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQQ 92 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 473
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=39.32 E-value=3.7e+02 Score=26.13 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ-------------------------------------- 652 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~-------------------------------------- 652 (1154)
++.+......++++++.+...+.+++..+.+.+...+.+..-
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~v 80 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYV 80 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEE
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 653 -------ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 653 -------l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+-.+.++..+++.++.+++.+..+.++...+..
T Consensus 81 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 81 EKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.09 E-value=4.9e+02 Score=27.45 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhhcccccccchhhHH
Q 001112 542 WRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQF------------KESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHA 609 (1154)
Q Consensus 542 ~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l------------~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~e~~ 609 (1154)
....++.....++-......+..++..+.+++.++ ...........+.+-..+++ +..
T Consensus 5 ~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeE----------Eqq 74 (182)
T PF15035_consen 5 DAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEE----------EQQ 74 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHH----------HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR 669 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~ 669 (1154)
...+|...+.-|.++++.....++.|...+..+......+...+...+.....-+.....
T Consensus 75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~ 134 (182)
T PF15035_consen 75 RSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQ 134 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 475
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=39.02 E-value=3e+02 Score=28.86 Aligned_cols=81 Identities=10% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCcccccccc
Q 001112 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEH 700 (1154)
Q Consensus 621 Le~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~~~~~~~~~~~~~ 700 (1154)
+.+.++-++.....++.++++++.....+..++..-+ +-++..+++++-..+..|+..+..+++......+.......
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYq--ll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~~~~~~~~~~ 160 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQ--LLQHRREMEEMLERLQKLEARLKKLEPIYITPDTEPTYERE 160 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHhHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccc
Q ss_pred cCC
Q 001112 701 ISA 703 (1154)
Q Consensus 701 ~~~ 703 (1154)
...
T Consensus 161 ~~~ 163 (175)
T PRK13182 161 KKP 163 (175)
T ss_pred cCC
No 476
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=38.68 E-value=83 Score=37.09 Aligned_cols=129 Identities=22% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001112 548 KRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSS 627 (1154)
Q Consensus 548 ~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~ 627 (1154)
+....++.+......+++.....+++....+.-..+.+..+...+...++ ...+.++.+++..++....+
T Consensus 54 k~~~~qLrE~~et~~KE~~~~eKe~kE~~~K~~~~~~e~~ek~~k~l~el----------~~~~~elkkEie~IKk~q~e 123 (370)
T PF02994_consen 54 KDFKNQLREQDETPEKELKNKEKELKENIIKNLEVLKEEKEKSIKELNEL----------KKRIKELKKEIENIKKNQSE 123 (370)
T ss_dssp --------------------------------------------------------------------------H-----
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhhhhHhhhhhcccccchhhhhHHHHHHH----------HHHHHHHHHHHHHHhhhHHH
Q ss_pred HHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 628 LEKKIDETEKKFE----ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 628 l~~~l~ele~~~~----e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
....+..+..+.. .+.....++..++.+++..+..++..+..++.++..+++.+..++.
T Consensus 124 ~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 124 MKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
No 477
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=38.60 E-value=6.3e+02 Score=28.60 Aligned_cols=131 Identities=12% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhc
Q 001112 531 NKLEKQVEELTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQ----------LQFKESKEKLMKEIEVAKKEAEKV 597 (1154)
Q Consensus 531 ~~LE~kv~el~~~l~~e~~~~~~le~~~~---~e~~~L~~~l~~le----------~~l~~~~~~~~~e~~~~~~~~ee~ 597 (1154)
++++++-.||..+++--.+.+.-|+...+ .|+++|...+.+|+ ..+...+.+.++-.+..+.+..|+
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeREL 82 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLEREL 82 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccccchh--------------hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 598 PVVQEVPVI--------------DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIV 661 (1154)
Q Consensus 598 ~~~~e~~~~--------------e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~ 661 (1154)
...+-.... ..-.+..+..|..-|+.+++.|+.++.-.|..-..--..++++.-++..++.-+.
T Consensus 83 ARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk 160 (351)
T PF07058_consen 83 ARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLK 160 (351)
T ss_pred HHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 478
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=38.36 E-value=8.4e+02 Score=29.95 Aligned_cols=247 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred hhhhhhhccchhhhhhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 001112 413 ARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMK 492 (1154)
Q Consensus 413 ar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~ 492 (1154)
++-.|+.+|+.-+ -|++.-=..+..+-+-...|++.+..+..+.. .+--||+.----.+-.+...
T Consensus 144 ~~ely~elr~~vl-------~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt~--------~Gd~ieA~evl~~~ee~~~~ 208 (570)
T COG4477 144 VLELYEELRRDVL-------ANRHQYGEAAPELEKKLENIEEELSQFVELTS--------SGDYIEAREVLEEAEEHMIA 208 (570)
T ss_pred HHHHHHHHHHHHH-------HhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcc--------CCChhHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHhHHHHHHH--HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 493 LKKAAITTQCAWRGKVAR--RELRKLKMAARETG---------ALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQE 561 (1154)
Q Consensus 493 ~~~a~i~iQ~~~R~~~ar--r~l~~lk~~a~~~~---------~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e 561 (1154)
++.-.-.|-+.++....- .++..|+..-++.. .+.+....|..++++....+. .-+
T Consensus 209 L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~-------------~Le 275 (570)
T COG4477 209 LRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLT-------------QLE 275 (570)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHH-------------Hhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchh------------------------hHHHHHHHHHH
Q 001112 562 NAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI------------------------DHAVVEELTSE 617 (1154)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~------------------------e~~~~~~L~~e 617 (1154)
+......+...+..++.+-..++.|.++.+...+..+.+.+-... +...+...+++
T Consensus 276 ld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~e 355 (570)
T COG4477 276 LDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKE 355 (570)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.+.+++.+++..+.+++-+.....+........+.+.+-+++..+.+..+..|+..=.+-++.+..++.+
T Consensus 356 L~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~ 425 (570)
T COG4477 356 LKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSK 425 (570)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=38.24 E-value=3.1e+02 Score=24.97 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~ 679 (1154)
+..+.+..+++...++.++++++.+.++..++-....++...+....++++.+-+.++++-+.+.++.+
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~ 89 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELNS 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
No 480
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=37.81 E-value=1.9e+02 Score=36.85 Aligned_cols=78 Identities=10% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER-------LKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~-------~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e 680 (1154)
..+...+.++..+++.+++.++++++++|+++.+++.....- ..++.++.+++..++.+++++.++-.+|+++
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~ 627 (638)
T PRK10636 548 KRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQ 627 (638)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 001112 681 NQILR 685 (1154)
Q Consensus 681 ~~~l~ 685 (1154)
++.+.
T Consensus 628 ~~~~~ 632 (638)
T PRK10636 628 LEQML 632 (638)
T ss_pred HHHHh
No 481
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=37.76 E-value=3.1e+02 Score=30.93 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhHHHH
Q 001112 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI----------VQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~----------~~l~~~~~~Le~~i~~Le~e 680 (1154)
++.+...+..|..+++--+++..=|++.......+.+++..-+.++++.+ ..++.++.+|.++-.-|+.|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 001112 681 NQILR 685 (1154)
Q Consensus 681 ~~~l~ 685 (1154)
+...+
T Consensus 82 LARaK 86 (351)
T PF07058_consen 82 LARAK 86 (351)
T ss_pred HHHhh
No 482
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=36.69 E-value=2.6e+02 Score=28.64 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001112 625 VSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 625 l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
++.+-.....++..+....+....+...+...+..+....+.+.+|+..+..++.++..+..++
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 483
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=36.53 E-value=3.1e+02 Score=24.46 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001112 626 SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 626 ~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+|-++..++..++...+.+...+..-+..++.++..+..-.+.|+.+...++.......+
T Consensus 1 n~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~~~~~~~ 61 (76)
T PF11544_consen 1 NELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRSNDLNKQ 61 (76)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
No 484
>PLN02320 seryl-tRNA synthetase
Probab=36.38 E-value=1.6e+02 Score=36.10 Aligned_cols=71 Identities=20% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001112 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
+++-.+..+..++..++++++.+..+.-+++.. ........++.++...+.+++..|++++..+++++..+
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-----~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG-----KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.36 E-value=2e+02 Score=29.42 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~ 660 (1154)
......|..++.+|+.+++.|++++..++++....+.....+..-++.+.+..
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=36.34 E-value=1.1e+03 Score=30.64 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHH
Q 001112 495 KAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMR-----VDMEEAKTQENAKLQSAL 569 (1154)
Q Consensus 495 ~a~i~iQ~~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~-----~~le~~~~~e~~~L~~~l 569 (1154)
.++-.+......+.....-.+...+.+..+-|.+....++.++.+.+.+++.=++.+ ..-......+..+++.++
T Consensus 241 ~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql 320 (726)
T PRK09841 241 LITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQL 320 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH
Q 001112 570 QEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKID---ETEKKFEETSKIS 646 (1154)
Q Consensus 570 ~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~---ele~~~~e~~~~~ 646 (1154)
.+++.+..++...... ..-.+..+..+...|+.++..++.++. +.+.++.+++++.
T Consensus 321 ~~l~~~~~~l~~~~~~---------------------~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~ 379 (726)
T PRK09841 321 NELTFREAEISQLYKK---------------------DHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDV 379 (726)
T ss_pred HHHHHHHHHHHHHhcc---------------------cCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001112 647 EERLKQALEAESKIVQLK 664 (1154)
Q Consensus 647 ~~~~~~l~~~e~~~~~l~ 664 (1154)
+-.......+-.+..+++
T Consensus 380 ~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 380 EAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHHHHHHHH
No 487
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=36.28 E-value=9.8e+02 Score=30.12 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001112 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAE 595 (1154)
Q Consensus 519 ~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~---~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~e 595 (1154)
.......+.+...+-++...+.++++.+|+++...-++... .+..+-+++-..++....+.+.+.+.+....+...
T Consensus 245 ~~l~~KQ~rk~meEreK~R~erEr~~leeKrlk~~~~~eek~~~keE~~kekee~Klekd~KKqqkekEkeEKrrKdE~- 323 (811)
T KOG4364|consen 245 EKLLLKQLRKNMEEREKERKERERQVLEEKRLKEKEQKEEKKAIKEENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQ- 323 (811)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-
Q ss_pred hcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 596 KVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE 657 (1154)
Q Consensus 596 e~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e 657 (1154)
+..+-++...+..+..+.-.++..+.++..++....+.+-.++..+-..++
T Consensus 324 -----------Ek~kKqeek~KR~k~~Erkee~~rk~deerkK~e~ke~ea~E~rkkr~~ae 374 (811)
T KOG4364|consen 324 -----------EKLKKQEEKQKRAKIMERKEEKSRKSDEERKKLESKEVEAQELRKKRHEAE 374 (811)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
No 488
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=36.23 E-value=2.7e+02 Score=23.96 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 634 ETEKKFEETSKISEERLKQALEAESKI--------------VQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 634 ele~~~~e~~~~~~~~~~~l~~~e~~~--------------~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
+.+..+.+++++...+...+...+.++ ..-...+.+++.++..+++.+..|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 489
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.07 E-value=1.3e+02 Score=25.11 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001112 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1154)
Q Consensus 638 ~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~L 677 (1154)
++.+++.+...+...+...+++..++.++++.+++.+.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=36.05 E-value=3.8e+02 Score=28.29 Aligned_cols=72 Identities=21% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+.-..+.++..+..+...++.+..+++.+++++++..+....+-.+ ..+-+-+.+.++++-|++-|..|+.|
T Consensus 179 KALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E------~r~ieEkk~~eei~fLk~tN~qLKaQ 250 (259)
T KOG4001|consen 179 KALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEE------EREIEEKKMKEEIEFLKETNRQLKAQ 250 (259)
T ss_pred HHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.03 E-value=70 Score=40.95 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001112 471 TRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAA 520 (1154)
Q Consensus 471 ~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arr~l~~lk~~a 520 (1154)
+..+..+-+..-....|..-++..++++.+|+.|||+.+|+..+.+-.++
T Consensus 6 ~er~~~l~r~~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~ 55 (1001)
T KOG0942|consen 6 NERDNLLRRAAEERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFREE 55 (1001)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=35.49 E-value=4.7e+02 Score=26.17 Aligned_cols=105 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001112 556 EAKTQENAKLQSALQEMQLQF-KESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDE 634 (1154)
Q Consensus 556 ~~~~~e~~~L~~~l~~le~~l-~~~~~~~~~e~~~~~~~~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~e 634 (1154)
.....+...+..++.+++..+ ..+...+......+......+ .............+...+..++.....
T Consensus 4 ~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l----------~~~~~~~~~~~~~~~~~~~~l~~~~~k 73 (136)
T PF04871_consen 4 KSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKEL----------KEAEQAAEAELEELASEVKELEAEKEK 73 (136)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 635 TEKKF-EETSKISEERLKQALEAESKIVQLKTAMHRL 670 (1154)
Q Consensus 635 le~~~-~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~L 670 (1154)
+.... .+.+.+...+..-+.+...++..+...+..|
T Consensus 74 l~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 74 LKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
No 493
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=35.37 E-value=5.5e+02 Score=26.93 Aligned_cols=173 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 513 LRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKK 592 (1154)
Q Consensus 513 l~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~ 592 (1154)
+..|+---..+.+|.-.+..-|..+..|..+...-+..-............++..+..++..++..++....--..++..
T Consensus 3 isALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLey 82 (178)
T PF14073_consen 3 ISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEY 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 593 EAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1154)
Q Consensus 593 ~~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~ 672 (1154)
+...+...+-....-.++-..+..+...-...+..-.++++-+|.+...+...-.-...++..++.++..=+.+-+-+++
T Consensus 83 MRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQd 162 (178)
T PF14073_consen 83 MRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQD 162 (178)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHH
Q 001112 673 KVSDMETENQILR 685 (1154)
Q Consensus 673 ~i~~Le~e~~~l~ 685 (1154)
+-..|+..++.-|
T Consensus 163 kAaqLQt~lE~nr 175 (178)
T PF14073_consen 163 KAAQLQTGLETNR 175 (178)
T ss_pred HHHHHHhhHHHhh
No 494
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=35.35 E-value=2.5e+02 Score=35.48 Aligned_cols=130 Identities=22% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHhhhcccchhhhchhhhHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHH
Q 001112 382 QRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAA 461 (1154)
Q Consensus 382 Q~~~R~~~~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~~a 461 (1154)
|+.-++-.++-.|...+.++..+|..+-....+..--..- ++..+|+.-..+..++.|....+++..+|++.+.++.
T Consensus 132 ~~~~lR~~q~~~~~~q~~~~~~~~k~~~~~~~~~~~v~k~---~~~~~~~~~~~~~~~~DfG~q~~a~~tl~Sy~~~WL~ 208 (1023)
T KOG0165|consen 132 KASGLRCSQEAEYHSQSRAAVTIQKAFCRMVTRKLETQKC---AALRIQFFLQMAVYRRDFGQQKRAAITLQSYFRTWLT 208 (1023)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhhhHHHHH---HHhhhHHHhhhchhhhhhHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHH----------------------------------HHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHH
Q 001112 462 RNEL----------------------------------RFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGK 507 (1154)
Q Consensus 462 R~~~----------------------------------~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~ 507 (1154)
+.-+ .+....-....||......+..........-++.||.+|+.+
T Consensus 209 ~~L~~IF~~~~~~~~khlM~kL~~f~s~~~FS~ptmlk~y~~~~s~~~ii~~~~kEAL~k~~L~~i~~L~~~I~~A~~~~ 288 (1023)
T KOG0165|consen 209 RKLFLIFRKAAVVLQKHLMHKLRAFLSAKHFSQPTMLKVYLQIRSSVIIIQARSKEALQKRKLQEIKNLTIKIQAAWRRY 288 (1023)
T ss_pred HHHHHHhccchhcCcHHHHHHHHHHHHHHHhcCchHHHHHHHhccCceeeccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHH
Q 001112 508 VARRELR 514 (1154)
Q Consensus 508 ~arr~l~ 514 (1154)
.+...+.
T Consensus 289 ~~~~~~~ 295 (1023)
T KOG0165|consen 289 RAKKYLC 295 (1023)
T ss_pred hhhhhhh
No 495
>COG5570 Uncharacterized small protein [Function unknown]
Probab=35.35 E-value=67 Score=26.08 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001112 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 627 ~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e 680 (1154)
..+..+.+++++-..++.+.++....-......+.+|+...-.|+++|+.|+..
T Consensus 2 aieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 2 AIESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred cHHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
No 496
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=35.29 E-value=1.3e+02 Score=33.70 Aligned_cols=53 Identities=8% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001112 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 635 le~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.+.++..++.........+.+++.++..++.++.+|+..++++.-+++.++++
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 497
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=35.25 E-value=4.5e+02 Score=25.91 Aligned_cols=67 Identities=24% Similarity=0.283 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001112 503 AWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESK 580 (1154)
Q Consensus 503 ~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~ 580 (1154)
.+|-+.-|+-|++.-=++.=..+-...+.+||++..+|.+.++ ....|+..+..+++.++...+.+.
T Consensus 49 VvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~-----------~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 49 VVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVE-----------KLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.24 E-value=2.1e+02 Score=27.49 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001112 626 SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 626 ~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e 680 (1154)
.++-..+.+++..+..+-.+..++...+.++.++...|+-++..|++.+.+++..
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~ 58 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEAE 58 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 499
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=35.12 E-value=4.9e+02 Score=26.28 Aligned_cols=125 Identities=19% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 001112 523 TGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQE 602 (1154)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~e 602 (1154)
...+++.-..+|.+..+...+.. +....+++-.+++..+..+++.+..-...+.+.+++.+
T Consensus 33 ls~f~AkEeeIErkKmeVrekVq-----------~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkI-------- 93 (159)
T PF04949_consen 33 LSAFRAKEEEIERKKMEVREKVQ-----------AQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKI-------- 93 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH--------
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 001112 603 VPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQL-KTAMHRLEEKVS 675 (1154)
Q Consensus 603 ~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l-~~~~~~Le~~i~ 675 (1154)
+..+.+..-|-.....-+.+..+.-+...+..+++..+..+|.++-..-..+ -+.+++|...|.
T Consensus 94 ---------D~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~ie 158 (159)
T PF04949_consen 94 ---------DSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKEIE 158 (159)
T ss_pred ---------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 500
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.02 E-value=2.2e+02 Score=32.65 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001112 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
++-..+.+++++.+....+++...-+++.....++....+.++.+...+++.++-|..++++-.++.+.+.
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~ 287 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLE 287 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCc
Done!