Query 001113
Match_columns 1154
No_of_seqs 568 out of 2961
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:42:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 100.0 3E-135 1E-139 1305.1 62.3 649 1-661 365-1047(1080)
2 1i84_S Smooth muscle myosin he 100.0 2E-110 6E-115 1102.7 41.7 418 1-418 391-838 (1184)
3 1kk8_A Myosin heavy chain, str 100.0 6E-108 2E-112 1019.9 33.7 417 1-418 388-825 (837)
4 1w7j_A Myosin VA; motor protei 100.0 9E-106 3E-110 995.7 34.2 399 1-401 365-794 (795)
5 4anj_A Unconventional myosin-V 100.0 1E-104 3E-109 1006.5 31.3 412 1-415 380-814 (1052)
6 2ycu_A Non muscle myosin 2C, a 100.0 1E-102 5E-107 995.7 29.1 420 1-420 360-809 (995)
7 1g8x_A Myosin II heavy chain f 100.0 1E-100 5E-105 974.8 44.2 419 1-436 383-808 (1010)
8 1lkx_A Myosin IE heavy chain; 100.0 8E-100 3E-104 930.4 26.6 373 1-374 310-696 (697)
9 1w9i_A Myosin II heavy chain; 100.0 1.3E-99 4E-104 932.4 27.1 377 1-379 383-767 (770)
10 4db1_A Myosin-7; S1DC, cardiac 100.0 7E-100 2E-104 938.1 24.6 374 1-375 389-782 (783)
11 2v26_A Myosin VI; calmodulin-b 100.0 6.2E-99 2E-103 934.9 30.1 386 1-389 376-784 (784)
12 2f6h_X Myosin-2, type V myosin 100.0 3.4E-61 1.2E-65 562.2 32.1 360 738-1143 6-403 (419)
13 3mmi_A Myosin-4; globular tail 100.0 1.8E-54 6.2E-59 485.3 23.1 319 739-1115 17-351 (386)
14 2dfs_A Myosin-5A; myosin-V, in 99.9 2.1E-21 7E-26 250.3 26.2 127 390-520 760-890 (1080)
15 1i84_S Smooth muscle myosin he 99.2 4.2E-11 1.4E-15 158.3 13.7 46 398-443 792-838 (1184)
16 2ix7_C Myosin-5A; contractIle 99.1 3.2E-11 1.1E-15 100.3 2.6 57 372-428 2-58 (58)
17 1n2d_C IQ2 and IQ3 motifs from 98.9 5.7E-10 1.9E-14 88.9 4.7 46 397-442 2-47 (48)
18 2ix7_C Myosin-5A; contractIle 98.9 1.4E-09 4.9E-14 90.3 6.8 54 422-475 4-57 (58)
19 1n2d_C IQ2 and IQ3 motifs from 98.6 9.5E-08 3.3E-12 75.9 6.5 45 446-490 3-47 (48)
20 1wdc_A Scallop myosin; calcium 98.1 1.3E-06 4.3E-11 73.9 3.4 48 370-417 1-51 (64)
21 2bl0_A Major plasmodial myosin 97.9 4E-06 1.4E-10 70.6 3.0 43 374-416 3-48 (63)
22 2v71_A Nuclear distribution pr 97.8 0.0023 7.9E-08 64.9 20.6 41 612-652 98-138 (189)
23 1wdc_A Scallop myosin; calcium 97.5 4.9E-05 1.7E-09 64.1 3.8 48 396-443 4-52 (64)
24 2bl0_A Major plasmodial myosin 97.5 4E-05 1.4E-09 64.4 3.1 47 397-443 3-50 (63)
25 1kk8_A Myosin heavy chain, str 97.1 0.00022 7.4E-09 89.7 3.8 45 399-443 780-825 (837)
26 3na7_A HP0958; flagellar bioge 97.1 0.089 3E-06 57.1 23.9 51 609-659 90-140 (256)
27 3vkg_A Dynein heavy chain, cyt 96.6 0.23 7.8E-06 70.6 27.5 30 511-540 1924-1953(3245)
28 3o0z_A RHO-associated protein 96.3 0.43 1.5E-05 47.2 20.1 15 531-545 9-23 (168)
29 3oja_B Anopheles plasmodium-re 95.8 0.14 4.8E-06 62.6 17.8 76 612-687 505-580 (597)
30 3na7_A HP0958; flagellar bioge 95.8 1.4 4.8E-05 47.5 23.6 45 610-654 98-142 (256)
31 3vkg_A Dynein heavy chain, cyt 95.7 1 3.5E-05 64.2 27.3 63 622-684 2034-2103(3245)
32 2efr_A General control protein 95.5 2.1 7.1E-05 42.1 21.4 39 615-653 76-114 (155)
33 3o0z_A RHO-associated protein 95.5 1.7 6E-05 42.9 20.2 18 516-533 22-39 (168)
34 2v71_A Nuclear distribution pr 95.2 1.9 6.6E-05 43.6 20.1 144 522-675 11-154 (189)
35 3oja_B Anopheles plasmodium-re 95.0 0.15 5.2E-06 62.3 13.9 68 614-681 514-581 (597)
36 3gn4_A Myosin-VI; unconvention 94.8 0.66 2.3E-05 45.0 14.8 56 432-495 14-69 (148)
37 2fxo_A Myosin heavy chain, car 94.8 2.5 8.6E-05 40.4 19.1 33 652-684 91-123 (129)
38 2v66_B Nuclear distribution pr 94.8 2.3 7.8E-05 39.2 17.5 66 610-675 36-101 (111)
39 2fxo_A Myosin heavy chain, car 94.6 3 0.0001 39.8 19.1 39 609-647 69-107 (129)
40 3hnw_A Uncharacterized protein 94.5 0.28 9.6E-06 47.5 11.5 70 614-683 66-135 (138)
41 2ocy_A RAB guanine nucleotide 94.1 3.5 0.00012 40.3 18.1 67 613-686 76-143 (154)
42 2kxw_B Sodium channel protein 93.8 0.022 7.4E-07 38.6 1.5 20 421-440 4-23 (27)
43 3gn4_A Myosin-VI; unconvention 93.7 0.13 4.4E-06 49.9 7.2 55 383-445 13-67 (148)
44 2l53_B CAM, voltage-gated sodi 93.5 0.038 1.3E-06 38.6 2.2 21 421-441 4-24 (31)
45 3bas_A Myosin heavy chain, str 93.0 1.3 4.5E-05 39.4 12.2 75 607-681 12-86 (89)
46 2ocy_A RAB guanine nucleotide 92.0 5.6 0.00019 38.9 16.1 73 615-687 57-137 (154)
47 3u1c_A Tropomyosin alpha-1 cha 92.0 4.4 0.00015 36.9 14.7 27 652-678 73-99 (101)
48 3ol1_A Vimentin; structural ge 91.1 3.4 0.00012 38.8 13.3 19 667-685 85-103 (119)
49 3swk_A Vimentin; cytoskeleton, 90.9 2.6 8.8E-05 37.2 11.5 77 610-686 8-84 (86)
50 1x79_B RAB GTPase binding effe 90.5 4.7 0.00016 37.2 13.0 30 656-685 75-104 (112)
51 3u59_A Tropomyosin beta chain; 90.5 6.4 0.00022 35.8 14.2 26 652-677 73-98 (101)
52 2kxw_B Sodium channel protein 90.4 0.17 5.7E-06 34.3 2.5 20 469-488 4-23 (27)
53 2l53_B CAM, voltage-gated sodi 90.3 0.25 8.5E-06 34.6 3.3 22 469-490 4-25 (31)
54 3a7p_A Autophagy protein 16; c 89.9 3.3 0.00011 40.1 12.1 63 624-686 69-131 (152)
55 3ol1_A Vimentin; structural ge 89.9 10 0.00036 35.5 15.5 47 640-686 65-115 (119)
56 2i1j_A Moesin; FERM, coiled-co 89.7 0.51 1.7E-05 57.1 7.9 19 565-583 340-358 (575)
57 2oqq_A Transcription factor HY 89.7 0.83 2.8E-05 33.8 5.8 34 653-686 5-38 (42)
58 2v66_B Nuclear distribution pr 89.4 13 0.00044 34.3 17.2 59 610-668 43-101 (111)
59 1ic2_A Tropomyosin alpha chain 89.2 5.4 0.00018 34.7 12.1 63 623-685 13-75 (81)
60 2a2f_X Exocyst complex compone 88.7 4.1 0.00014 45.4 13.7 101 942-1045 215-319 (325)
61 3u1c_A Tropomyosin alpha-1 cha 88.2 15 0.00051 33.4 15.8 19 653-671 81-99 (101)
62 3hnw_A Uncharacterized protein 88.2 4 0.00014 39.4 11.5 51 613-663 79-129 (138)
63 3mq7_A Bone marrow stromal ant 86.0 14 0.00049 33.8 12.8 27 660-686 73-99 (121)
64 1ic2_A Tropomyosin alpha chain 85.0 11 0.00038 32.7 11.6 60 612-671 9-68 (81)
65 2jee_A YIIU; FTSZ, septum, coi 84.3 14 0.00047 32.0 11.4 28 610-637 14-41 (81)
66 2eqb_B RAB guanine nucleotide 83.7 22 0.00076 31.8 12.8 17 563-579 8-24 (97)
67 2eqb_B RAB guanine nucleotide 83.4 25 0.00084 31.5 13.4 66 616-681 26-92 (97)
68 3ghg_A Fibrinogen alpha chain; 83.2 41 0.0014 38.9 18.1 15 565-579 62-76 (562)
69 3ghg_A Fibrinogen alpha chain; 82.7 8.8 0.0003 44.3 12.4 16 560-575 64-79 (562)
70 2b9c_A Striated-muscle alpha t 82.5 5.9 0.0002 38.7 9.7 65 608-672 51-115 (147)
71 3u59_A Tropomyosin beta chain; 82.3 29 0.00098 31.4 15.3 19 653-671 81-99 (101)
72 4h22_A Leucine-rich repeat fli 81.7 15 0.00052 33.1 11.0 64 611-674 18-81 (103)
73 2ycu_A Non muscle myosin 2C, a 81.2 0.33 1.1E-05 62.5 0.4 13 85-97 259-271 (995)
74 2w83_C C-JUN-amino-terminal ki 81.1 16 0.00054 31.0 10.1 28 655-682 48-75 (77)
75 2e7s_A RAB guanine nucleotide 80.5 3.8 0.00013 39.0 7.1 17 615-631 66-82 (135)
76 1wt6_A Myotonin-protein kinase 80.0 13 0.00043 32.0 9.4 28 659-686 46-73 (81)
77 1go4_E MAD1 (mitotic arrest de 79.8 8.4 0.00029 34.7 8.8 31 609-639 12-42 (100)
78 1x79_B RAB GTPase binding effe 79.7 27 0.00092 32.2 12.3 19 538-556 16-34 (112)
79 3a7p_A Autophagy protein 16; c 79.5 24 0.00081 34.2 12.4 64 610-673 69-132 (152)
80 3bas_A Myosin heavy chain, str 79.2 29 0.00098 30.7 12.2 69 614-682 12-80 (89)
81 3cvf_A Homer-3, homer protein 78.8 9 0.00031 33.0 8.3 28 609-636 13-40 (79)
82 4anj_A Unconventional myosin-V 78.4 2.5 8.4E-05 54.5 7.0 41 423-464 775-815 (1052)
83 3s4r_A Vimentin; alpha-helix, 78.1 27 0.00093 31.1 11.8 70 608-686 22-91 (93)
84 2b9c_A Striated-muscle alpha t 78.1 12 0.0004 36.6 10.1 64 621-684 50-113 (147)
85 3c9i_A Tail needle protein GP2 77.9 48 0.0016 33.3 14.3 76 617-692 78-153 (242)
86 2w6a_A ARF GTPase-activating p 77.7 12 0.00042 29.8 7.9 29 658-686 34-62 (63)
87 3iv1_A Tumor susceptibility ge 77.5 24 0.00084 30.2 10.5 59 619-677 14-72 (78)
88 3cve_A Homer protein homolog 1 77.4 28 0.00094 29.5 10.7 28 609-636 7-34 (72)
89 3q8t_A Beclin-1; autophagy, AT 77.2 41 0.0014 30.2 15.5 36 612-647 28-63 (96)
90 3tnu_B Keratin, type II cytosk 77.1 29 0.00098 33.0 12.5 68 610-680 37-104 (129)
91 1t2k_D Cyclic-AMP-dependent tr 76.1 17 0.00057 29.7 9.1 38 651-688 22-59 (61)
92 3swk_A Vimentin; cytoskeleton, 75.8 21 0.00073 31.3 10.2 66 612-677 17-82 (86)
93 3fhn_A Protein transport prote 75.8 25 0.00087 42.9 14.4 97 945-1046 562-658 (706)
94 2i1j_A Moesin; FERM, coiled-co 75.7 8.1 0.00028 46.6 10.2 16 530-545 330-345 (575)
95 1fxk_A Prefoldin; archaeal pro 75.6 31 0.001 31.3 12.0 31 656-686 70-100 (107)
96 3qh9_A Liprin-beta-2; coiled-c 75.2 26 0.0009 30.0 10.0 44 637-680 33-76 (81)
97 1w7j_A Myosin VA; motor protei 75.0 1.3 4.5E-05 55.3 3.1 27 423-449 768-794 (795)
98 3cvf_A Homer-3, homer protein 74.8 30 0.001 29.8 10.4 65 616-687 6-70 (79)
99 3q8t_A Beclin-1; autophagy, AT 74.6 48 0.0016 29.7 13.3 32 614-645 16-47 (96)
100 3cve_A Homer protein homolog 1 73.9 31 0.0011 29.1 10.1 56 632-687 9-64 (72)
101 3s4r_A Vimentin; alpha-helix, 73.5 37 0.0013 30.3 11.3 12 625-636 25-36 (93)
102 1l8d_A DNA double-strand break 73.1 30 0.001 31.8 11.3 32 655-686 68-99 (112)
103 3nmd_A CGMP dependent protein 73.1 9.9 0.00034 32.0 6.8 30 656-685 38-67 (72)
104 2zqm_A Prefoldin beta subunit 73.1 37 0.0013 31.3 12.0 30 657-686 76-105 (117)
105 2e7s_A RAB guanine nucleotide 73.0 32 0.0011 32.7 11.2 19 533-551 44-62 (135)
106 2b5u_A Colicin E3; high resolu 72.9 1.2E+02 0.004 35.0 17.5 20 566-585 348-367 (551)
107 3efg_A Protein SLYX homolog; x 72.6 8 0.00027 33.4 6.5 17 631-647 15-31 (78)
108 2zqm_A Prefoldin beta subunit 72.5 51 0.0017 30.3 12.9 39 648-686 74-112 (117)
109 3mq9_A Bone marrow stromal ant 72.4 59 0.002 37.9 16.5 26 659-684 444-469 (471)
110 3tnu_A Keratin, type I cytoske 71.0 31 0.0011 32.8 11.1 62 613-677 42-103 (131)
111 1deq_A Fibrinogen (alpha chain 70.0 60 0.0021 36.1 14.2 17 564-580 64-80 (390)
112 1m1j_B Fibrinogen beta chain; 69.3 1.2E+02 0.0041 35.1 17.3 30 657-686 167-196 (464)
113 3s9g_A Protein hexim1; cyclin 68.9 45 0.0015 29.6 10.2 23 665-687 65-87 (104)
114 1wt6_A Myotonin-protein kinase 68.5 53 0.0018 28.2 10.3 41 640-680 34-74 (81)
115 3a7o_A Autophagy protein 16; c 67.3 43 0.0015 27.7 9.2 20 667-686 48-67 (75)
116 1fxk_C Protein (prefoldin); ar 67.2 71 0.0024 30.2 12.9 39 649-687 93-131 (133)
117 1fxk_A Prefoldin; archaeal pro 67.1 71 0.0024 28.8 12.4 28 654-681 75-102 (107)
118 1go4_E MAD1 (mitotic arrest de 66.1 43 0.0015 30.1 10.0 17 660-676 77-93 (100)
119 1gu4_A CAAT/enhancer binding p 65.2 31 0.0011 29.7 8.6 36 652-687 37-72 (78)
120 3mq9_A Bone marrow stromal ant 64.5 1.1E+02 0.0039 35.3 16.7 18 564-581 401-418 (471)
121 3mq7_A Bone marrow stromal ant 63.8 90 0.0031 28.6 12.6 37 651-687 71-107 (121)
122 2wt7_A Proto-oncogene protein 63.7 44 0.0015 27.4 9.0 36 651-686 23-58 (63)
123 1ci6_A Transcription factor AT 63.2 32 0.0011 28.3 8.0 35 652-686 24-58 (63)
124 4dck_A Sodium channel protein 62.7 4 0.00014 40.6 3.0 24 421-444 128-151 (168)
125 3tnu_B Keratin, type II cytosk 62.3 33 0.0011 32.6 9.2 26 614-639 34-59 (129)
126 2v4h_A NF-kappa-B essential mo 61.8 95 0.0033 28.3 13.1 22 667-688 85-106 (110)
127 3qh9_A Liprin-beta-2; coiled-c 61.7 71 0.0024 27.4 9.8 43 613-655 23-65 (81)
128 3nmd_A CGMP dependent protein 61.6 21 0.00072 30.1 6.6 16 660-675 49-64 (72)
129 1hjb_A Ccaat/enhancer binding 61.0 41 0.0014 29.6 8.7 38 653-690 38-75 (87)
130 1l8d_A DNA double-strand break 60.6 84 0.0029 28.6 11.6 32 651-682 71-102 (112)
131 1m1j_A Fibrinogen alpha subuni 59.5 2.2E+02 0.0075 32.4 16.3 26 658-683 132-157 (491)
132 3iox_A AGI/II, PA; alpha helix 59.4 2.3E+02 0.008 32.7 16.9 30 657-686 79-108 (497)
133 3s9g_A Protein hexim1; cyclin 59.4 57 0.002 28.9 9.1 32 656-687 63-94 (104)
134 2xdj_A Uncharacterized protein 58.7 52 0.0018 28.6 8.9 33 654-686 23-55 (83)
135 2fji_1 Exocyst complex compone 58.6 1.5E+02 0.005 33.7 15.8 123 947-1073 219-349 (399)
136 1jnm_A Proto-oncogene C-JUN; B 58.1 27 0.00092 28.5 6.8 37 651-687 22-58 (62)
137 3ni0_A Bone marrow stromal ant 58.0 99 0.0034 27.2 11.2 23 663-685 65-87 (99)
138 3i00_A HIP-I, huntingtin-inter 57.3 1.1E+02 0.0037 28.6 11.4 68 610-687 16-83 (120)
139 3m9b_A Proteasome-associated A 56.4 8.2 0.00028 40.7 4.1 40 647-686 57-96 (251)
140 3k29_A Putative uncharacterize 56.3 1.6E+02 0.0053 29.0 23.0 15 663-677 132-146 (169)
141 3tnu_A Keratin, type I cytoske 56.2 1.4E+02 0.0046 28.3 13.1 29 610-638 46-74 (131)
142 2k48_A Nucleoprotein; viral pr 55.8 1.1E+02 0.0039 27.4 10.5 31 609-639 35-65 (107)
143 1gd2_E Transcription factor PA 54.5 26 0.00088 29.5 6.1 27 658-684 43-69 (70)
144 3he5_B Synzip2; heterodimeric 54.3 48 0.0016 24.5 6.5 14 667-680 33-46 (52)
145 1m1j_B Fibrinogen beta chain; 53.6 3.1E+02 0.011 31.7 17.1 24 663-686 166-189 (464)
146 1m1j_C Fibrinogen gamma chain; 52.7 1.7E+02 0.0058 33.3 14.5 28 659-686 106-133 (409)
147 1gk4_A Vimentin; intermediate 52.1 1.1E+02 0.0039 26.5 10.2 47 523-583 3-49 (84)
148 1m1j_C Fibrinogen gamma chain; 51.0 2.5E+02 0.0087 31.9 15.6 8 814-821 223-230 (409)
149 4dck_A Sodium channel protein 49.9 14 0.00049 36.7 4.5 24 469-492 128-151 (168)
150 3iox_A AGI/II, PA; alpha helix 49.4 3.4E+02 0.012 31.3 16.1 27 658-684 73-99 (497)
151 3n1e_A Vacuolar protein sortin 49.1 1.4E+02 0.0047 28.8 11.0 77 893-986 15-91 (141)
152 3htk_A Structural maintenance 48.3 96 0.0033 24.8 8.6 24 657-680 32-55 (60)
153 3efg_A Protein SLYX homolog; x 48.3 46 0.0016 28.6 6.9 12 673-684 43-54 (78)
154 3u06_A Protein claret segregat 47.8 21 0.00073 41.0 6.2 15 948-962 311-325 (412)
155 2no2_A HIP-I, huntingtin-inter 47.4 1.7E+02 0.0057 26.7 12.5 11 670-680 87-97 (107)
156 4etp_A Kinesin-like protein KA 47.3 24 0.00082 40.5 6.5 14 949-962 324-337 (403)
157 2k48_A Nucleoprotein; viral pr 46.8 1.6E+02 0.0056 26.4 10.4 58 523-580 37-102 (107)
158 3qne_A Seryl-tRNA synthetase, 46.6 47 0.0016 38.9 8.8 73 608-684 32-104 (485)
159 3i00_A HIP-I, huntingtin-inter 46.5 1.9E+02 0.0063 27.0 11.4 10 564-573 44-53 (120)
160 1wle_A Seryl-tRNA synthetase; 46.5 71 0.0024 37.6 10.5 76 609-684 70-149 (501)
161 1uii_A Geminin; human, DNA rep 46.1 72 0.0025 27.6 7.5 34 653-686 41-74 (83)
162 3htk_A Structural maintenance 45.9 1.1E+02 0.0038 24.4 8.6 23 652-674 34-56 (60)
163 1d7m_A Cortexillin I; coiled-c 45.7 1.5E+02 0.0051 25.7 15.6 27 657-683 73-99 (101)
164 1wlq_A Geminin; coiled-coil; 2 43.9 68 0.0023 27.7 7.0 32 655-686 35-66 (83)
165 3m91_A Proteasome-associated A 42.6 97 0.0033 24.3 7.2 19 664-682 29-47 (51)
166 2dq0_A Seryl-tRNA synthetase; 41.5 50 0.0017 38.4 8.1 73 609-685 31-103 (455)
167 2ke4_A CDC42-interacting prote 40.4 1.7E+02 0.0059 26.2 9.6 29 657-685 61-89 (98)
168 2lw1_A ABC transporter ATP-bin 39.7 1.2E+02 0.004 26.6 8.4 18 619-636 25-42 (89)
169 4h22_A Leucine-rich repeat fli 39.6 2.1E+02 0.0073 25.7 11.3 49 617-665 31-79 (103)
170 2zdi_C Prefoldin subunit alpha 39.0 1.9E+02 0.0067 27.8 10.8 39 649-687 103-141 (151)
171 3lss_A Seryl-tRNA synthetase; 38.7 1.2E+02 0.0043 35.3 10.8 36 608-643 36-71 (484)
172 1lq7_A Alpha3W; three helix bu 38.0 36 0.0012 26.3 4.0 9 672-680 55-63 (67)
173 2xnx_M M protein, M1-BC1; cell 38.0 86 0.0029 30.0 7.5 26 661-686 83-108 (146)
174 1f5n_A Interferon-induced guan 37.8 4.7E+02 0.016 31.3 16.0 11 195-205 96-106 (592)
175 1deq_A Fibrinogen (alpha chain 37.5 4.7E+02 0.016 29.1 17.2 15 531-545 63-77 (390)
176 4etp_A Kinesin-like protein KA 36.9 71 0.0024 36.5 8.3 9 677-685 50-58 (403)
177 4emc_A Monopolin complex subun 35.8 96 0.0033 31.1 7.8 31 610-640 21-51 (190)
178 3ra3_B P2F; coiled coil domain 35.6 31 0.0011 22.3 2.7 24 662-685 4-27 (28)
179 1t2k_D Cyclic-AMP-dependent tr 35.4 1.7E+02 0.006 23.5 9.1 28 652-679 30-57 (61)
180 3ghg_C Fibrinogen gamma chain; 35.0 5E+02 0.017 29.4 14.6 25 662-686 109-133 (411)
181 1dip_A Delta-sleep-inducing pe 34.8 46 0.0016 27.8 4.4 28 660-687 17-44 (78)
182 2yy0_A C-MYC-binding protein; 34.7 65 0.0022 25.5 5.2 30 609-638 19-48 (53)
183 2ke4_A CDC42-interacting prote 34.5 2.5E+02 0.0086 25.1 11.4 28 608-635 61-88 (98)
184 1t6f_A Geminin; coiled-coil, c 34.2 1.2E+02 0.004 21.8 5.6 25 661-685 10-34 (37)
185 2w6a_A ARF GTPase-activating p 34.2 1.8E+02 0.0062 23.3 8.3 36 653-688 22-57 (63)
186 2z5i_A TM, general control pro 34.0 90 0.0031 24.6 5.9 36 651-686 5-40 (52)
187 4dzn_A Coiled-coil peptide CC- 33.9 88 0.003 21.0 4.7 26 661-686 5-30 (33)
188 1f5n_A Interferon-induced guan 33.8 2E+02 0.0069 34.5 11.9 13 68-80 92-104 (592)
189 3c9i_A Tail needle protein GP2 33.1 3.5E+02 0.012 27.2 11.2 60 624-683 92-151 (242)
190 1lwu_C Fibrinogen gamma chain; 32.9 88 0.003 34.5 7.8 30 657-686 25-54 (323)
191 2zxx_A Geminin; coiled-coil, c 32.8 1.1E+02 0.0036 26.4 6.5 25 660-684 36-60 (79)
192 4fi5_A Nucleoprotein; structur 32.7 2.9E+02 0.0098 25.2 10.2 30 610-639 23-52 (113)
193 2xdj_A Uncharacterized protein 32.2 2.5E+02 0.0085 24.3 10.0 39 647-685 23-61 (83)
194 3hr0_A COG4; conserved oligome 32.2 4.8E+02 0.016 27.6 15.7 116 948-1074 127-249 (263)
195 1gd2_E Transcription factor PA 32.0 2.3E+02 0.0077 23.8 8.5 19 559-577 49-67 (70)
196 2yko_A LINE-1 ORF1P; RNA-bindi 31.9 88 0.003 32.6 7.1 14 659-672 35-48 (233)
197 1ses_A Seryl-tRNA synthetase; 31.6 95 0.0032 35.7 8.3 71 608-684 27-97 (421)
198 2lw1_A ABC transporter ATP-bin 31.0 2E+02 0.0068 25.1 8.5 24 610-633 23-46 (89)
199 3dvk_B Voltage-dependent R-typ 31.0 18 0.00061 23.4 1.1 15 425-439 8-22 (23)
200 3mov_A Lamin-B1; LMNB1, B-type 30.7 1.2E+02 0.0043 26.9 7.0 15 614-628 17-31 (95)
201 4fm3_A Uncharacterized hypothe 30.6 2.9E+02 0.0098 24.8 9.2 31 651-681 64-94 (98)
202 2wvr_A Geminin; DNA replicatio 30.2 1.3E+02 0.0045 30.4 7.7 21 665-685 122-142 (209)
203 1d7m_A Cortexillin I; coiled-c 30.1 2.7E+02 0.0093 24.1 15.5 10 536-545 5-14 (101)
204 3a2a_A Voltage-gated hydrogen 29.8 1.5E+02 0.005 23.4 6.1 24 521-544 11-34 (58)
205 3lay_A Zinc resistance-associa 29.7 1.3E+02 0.0044 30.1 7.7 26 657-682 112-137 (175)
206 1hjb_A Ccaat/enhancer binding 29.5 2.5E+02 0.0084 24.6 8.5 32 652-683 44-75 (87)
207 4fi5_A Nucleoprotein; structur 29.4 3.3E+02 0.011 24.8 10.0 56 525-580 26-89 (113)
208 3m9b_A Proteasome-associated A 29.1 38 0.0013 35.7 3.9 38 651-688 54-91 (251)
209 4emc_A Monopolin complex subun 28.8 2.8E+02 0.0096 27.8 9.8 20 657-676 40-59 (190)
210 3he5_A Synzip1; heterodimeric 28.7 1.7E+02 0.0058 21.3 7.0 8 615-622 9-16 (49)
211 1jnm_A Proto-oncogene C-JUN; B 28.7 2.2E+02 0.0074 23.0 7.7 9 532-540 26-34 (62)
212 2ic6_A Nucleocapsid protein; h 28.6 2.8E+02 0.0095 23.7 10.2 28 611-638 7-34 (78)
213 2oto_A M protein; helical coil 28.2 4.1E+02 0.014 25.6 18.8 15 526-540 27-41 (155)
214 3trt_A Vimentin; cytoskeleton, 27.5 2.7E+02 0.0094 23.3 11.1 27 659-685 50-76 (77)
215 2q6q_A Spindle POLE BODY compo 27.4 2.6E+02 0.0089 23.0 9.3 46 641-686 14-59 (74)
216 3uux_B Mitochondrial division 27.3 4.2E+02 0.014 27.5 11.1 47 633-686 180-226 (242)
217 1kd8_A GABH AIV, GCN4 acid bas 27.2 1.2E+02 0.0042 21.7 4.8 24 608-631 7-30 (36)
218 1gmj_A ATPase inhibitor; coile 27.2 2.2E+02 0.0074 24.7 7.5 25 655-679 55-79 (84)
219 2dgc_A Protein (GCN4); basic d 27.0 1.9E+02 0.0064 23.7 6.9 24 663-686 35-58 (63)
220 2akf_A Coronin-1A; coiled coil 26.6 1.4E+02 0.0048 20.2 4.8 18 662-679 10-27 (32)
221 3u06_A Protein claret segregat 26.5 1.2E+02 0.0043 34.5 8.0 14 1006-1019 332-345 (412)
222 3etw_A Adhesin A; antiparallel 26.4 3.9E+02 0.013 24.8 15.1 12 568-579 10-21 (119)
223 3k29_A Putative uncharacterize 26.4 4.7E+02 0.016 25.6 19.8 53 611-663 73-125 (169)
224 2oqq_A Transcription factor HY 26.1 2E+02 0.007 21.4 6.2 8 663-670 29-36 (42)
225 2ic9_A Nucleocapsid protein; h 26.1 3.5E+02 0.012 24.0 10.2 28 611-638 7-34 (96)
226 1lwu_C Fibrinogen gamma chain; 25.7 1.6E+02 0.0053 32.5 8.2 8 814-821 145-152 (323)
227 4dk0_A Putative MACA; alpha-ha 25.7 3.2E+02 0.011 30.1 11.3 35 653-687 117-151 (369)
228 4gkw_A Spindle assembly abnorm 25.6 4.1E+02 0.014 24.7 23.6 23 560-582 60-82 (167)
229 3a7o_A Autophagy protein 16; c 25.5 2.9E+02 0.01 22.9 8.9 55 626-680 21-75 (75)
230 3mov_A Lamin-B1; LMNB1, B-type 25.1 3.2E+02 0.011 24.2 8.7 15 628-642 17-31 (95)
231 3uux_B Mitochondrial division 25.0 5.6E+02 0.019 26.6 11.5 22 662-683 195-216 (242)
232 1gu4_A CAAT/enhancer binding p 24.7 3.3E+02 0.011 23.3 8.4 22 656-677 48-69 (78)
233 3ljm_A Coil Ser L9C; de novo d 24.1 1.3E+02 0.0044 20.0 4.2 10 620-629 12-21 (31)
234 1kd8_B GABH BLL, GCN4 acid bas 24.0 1E+02 0.0035 22.0 4.0 20 665-684 8-27 (36)
235 2w6b_A RHO guanine nucleotide 23.8 2.7E+02 0.0092 21.9 7.6 34 611-644 12-45 (56)
236 3he5_B Synzip2; heterodimeric 23.4 2.3E+02 0.0077 20.9 6.9 18 658-675 31-48 (52)
237 2ic9_A Nucleocapsid protein; h 22.4 4.1E+02 0.014 23.6 10.0 58 524-581 8-73 (96)
238 2akf_A Coronin-1A; coiled coil 22.3 1.8E+02 0.0063 19.7 4.7 21 615-635 5-25 (32)
239 2ic6_A Nucleocapsid protein; h 22.2 3.7E+02 0.013 23.0 10.2 57 524-580 8-72 (78)
240 1nkp_B MAX protein, MYC proto- 21.7 1.7E+02 0.0058 25.1 6.2 30 658-687 47-76 (83)
241 3ghg_B Fibrinogen beta chain; 21.6 9.5E+02 0.032 27.5 13.7 32 656-687 161-192 (461)
242 3etw_A Adhesin A; antiparallel 21.3 4.9E+02 0.017 24.1 13.3 23 660-682 77-99 (119)
243 2oxj_A Hybrid alpha/beta pepti 21.2 1.3E+02 0.0045 21.2 4.0 29 651-679 1-29 (34)
244 2wq1_A General control protein 21.1 1.8E+02 0.006 20.5 4.6 16 662-677 11-26 (33)
245 3v86_A De novo design helix; c 21.0 1.1E+02 0.0038 19.6 3.3 21 663-683 5-25 (27)
246 3m48_A General control protein 20.9 1.5E+02 0.0051 20.9 4.2 19 660-678 9-27 (33)
247 1deb_A APC protein, adenomatou 20.9 2.9E+02 0.01 21.3 7.0 50 625-674 5-54 (54)
248 1cxz_B Protein (PKN); protein- 20.9 3.9E+02 0.013 23.3 8.0 23 662-684 60-82 (86)
249 1g8x_A Myosin II heavy chain f 20.3 5.1E+02 0.017 33.2 12.7 59 389-447 754-816 (1010)
250 3swy_A Cyclic nucleotide-gated 20.2 3E+02 0.01 21.1 6.9 8 565-572 35-42 (46)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=3.1e-135 Score=1305.15 Aligned_cols=649 Identities=37% Similarity=0.609 Sum_probs=524.3
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001113 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
|||+++|.++||+|++.++||.+++|+++++|..+||||||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 365 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f 444 (1080)
T 2dfs_A 365 GVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETF 444 (1080)
T ss_dssp TCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCC
T ss_pred CCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCceEEeeccCCcccc
Confidence 79999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCChHHH
Q 001113 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1154)
+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+|.||++|||||+++ .|||+||||||++|+|||++|
T Consensus 445 ~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f 523 (1080)
T 2dfs_A 445 EINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTW 523 (1080)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHH
T ss_pred CcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCChHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 699999999999999999999
Q ss_pred HHHHHHHh-cCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhc-CCcccccccccchhh----
Q 001113 161 AQKLYQTF-KNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSAS-KCSFVSSLFLPLAEE---- 234 (1154)
Q Consensus 161 ~~kl~~~~-~~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S-~~~~v~~lf~~~~~~---- 234 (1154)
++||+.+| ++|++|.+|+.+...|+|+||||+|+|+++||++||+|+++++++++|++| +++||+.||+.....
T Consensus 524 ~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~ 603 (1080)
T 2dfs_A 524 AQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 603 (1080)
T ss_dssp HHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTHHHHHBCCCCHHHHHHHHTCSSCSHHHHSCC---------
T ss_pred HHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhHHHhccccccHHHHHHHHcccccHHHHHHhcccccccccc
Confidence 99999998 999999999998899999999999999999999999999999999999999 999999999864210
Q ss_pred -----------------------ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhh
Q 001113 235 -----------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLR 291 (1154)
Q Consensus 235 -----------------------~~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr 291 (1154)
..+..+++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++|||
T Consensus 604 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr 683 (1080)
T 2dfs_A 604 SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLR 683 (1080)
T ss_dssp ----------------------------CCCBHHHHHHHHHHHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhhHHHHh
Confidence 011235689999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHhcCCCCccChHHHHHHHhhhhhcccCCCchhHHHHHHHHhhcCC--CCcccccceeeeeccccchhhhh
Q 001113 292 CGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDAR 369 (1154)
Q Consensus 292 ~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~qiG~TkVFlr~~~~~~Le~~ 369 (1154)
|+||+|+|||+++|||+|++|.+|+.||++|+|...... |++++|+.||..+++ ++|++|+||||||+|+++.||.+
T Consensus 684 ~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~-d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~ 762 (1080)
T 2dfs_A 684 ACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLS-DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKI 762 (1080)
T ss_dssp TTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCS-SHHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHH
T ss_pred hcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCC-ChHHHHHHHHHHhcCChhhheeccccchhccchhhHHHHH
Confidence 999999999999999999999999999999999765544 899999999999865 48999999999999999999999
Q ss_pred hhhccchhHHHHHHHhhhcccchhhhchhhhHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHhhhhH
Q 001113 370 RTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSA 449 (1154)
Q Consensus 370 r~~~l~~~a~~IQ~~~R~~~~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~ 449 (1154)
|.+.+..+|+.||++||||++|++|.+++.|++.||++|||+++|+.++.+|+..||++||++||||.+|+.|.+++.++
T Consensus 763 R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aa 842 (1080)
T 2dfs_A 763 RADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDAT 842 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 450 VCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAA 529 (1154)
Q Consensus 450 i~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arr~l~~lk~~a~~~~~L~~~ 529 (1154)
+.||+.|||+.+|+.+..++++.+|+.||++||+|.+|+.|.+.+++++.+|+.||++++|+++..++.+++.++++++.
T Consensus 843 i~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~~l~~~ 922 (1080)
T 2dfs_A 843 IALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKL 922 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccccchh
Q 001113 530 KNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEK---LMKEIEVAKKEAEKVPVVQEVPVI 606 (1154)
Q Consensus 530 ~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~---~~~e~~~~~~~~ee~~~~~e~~~~ 606 (1154)
+.+||+++.+|+++++++++.+.++.+........+..++.+|+.++++++.. +....+....+.+++. .
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~-------~ 995 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA-------K 995 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 99999999999999998777666665544333333334444443333333221 1111122222222211 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIV 661 (1154)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~ 661 (1154)
.++.++++.++++.+++..+.++. ++++++..+++++..+..++++++..+.
T Consensus 996 l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 996 LRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444444555555444444442 3334444555555555555544444333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=1.7e-110 Score=1102.71 Aligned_cols=418 Identities=37% Similarity=0.667 Sum_probs=385.9
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCcccccccccCCcc
Q 001113 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIYGFES 79 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgvLDi~GFE~ 79 (1154)
|||+++|.++||+|++.+++|.|++++++++|..+||||||+||++||+|||.+||.+|++. .....|||||||||||+
T Consensus 391 g~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~ 470 (1184)
T 1i84_S 391 GINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEI 470 (1184)
T ss_dssp TSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCC
T ss_pred CCCHHHHHHHhcCcEEEeCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCC
Confidence 79999999999999999999999999999999999999999999999999999999999875 45679999999999999
Q ss_pred cCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcC--ccchhhcchhhhcCCCCC
Q 001113 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKK--PGGIIALLDEACMFPRST 156 (1154)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~-~dn~~~ldlie~~--~~Gil~lLdee~~~p~~t 156 (1154)
|+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+| .||++|||||+++ |.|||+||||||++|+||
T Consensus 471 f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~t 550 (1184)
T 1i84_S 471 FEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKAT 550 (1184)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCC
Confidence 9999999999999999999999999999999999999999999999 5999999999973 349999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCCC--CCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhh
Q 001113 157 HETFAQKLYQTFKNHKRFSKPKL--ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE 234 (1154)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~~--~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~ 234 (1154)
|.+|++||+.+|++|++|.+|+. +...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+.||+.....
T Consensus 551 d~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~s~~~~~~~lf~~~~~~ 630 (1184)
T 1i84_S 551 DTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRI 630 (1184)
T ss_dssp HHHHHHHHHHHTSSCTTEEECSSCTTTCEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSCHHHHHHHSCCTTC
T ss_pred hHHHHHHHHHHhCCCCCccCCCCCCCCCcEEEECCCceEEeccCCchhhccCcccHHHHHHHHhCchHHHHHHhcccccc
Confidence 99999999999999999999986 4689999999999999999999999999999999999999999999999864310
Q ss_pred ------------------ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchh
Q 001113 235 ------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVM 296 (1154)
Q Consensus 235 ------------------~~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvl 296 (1154)
..++++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||+.+|++||||+||+
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~phfvRCIkPN~~k~p~~fd~~~V~~QLr~~Gvl 710 (1184)
T 1i84_S 631 VGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVL 710 (1184)
T ss_dssp CCC---------------------CCCHHHHHHHHHHHHHHHHTTSEEEECCEECCCSSCCSSCCCHHHHHHHHHHTTHH
T ss_pred ccccccccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceeeeCCCCcCCCCcccHHHHHHHHhhcCch
Confidence 01123468999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCCccChHHHHHHHhhhhhcccCC-CchhHHHHHHHHhhcCCC--Ccccccceeeeeccccchhhhhhhhc
Q 001113 297 EAIRISCAGYPTRKPFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEV 373 (1154)
Q Consensus 297 e~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r~~~ 373 (1154)
|+|||+++|||+|++|.+|+.||++|.|...+. ..|.+..|..||..++++ .|++|+||||||+|+++.||.+|..+
T Consensus 711 E~iri~r~Gfp~R~~~~~F~~ry~~L~~~~~~~~~~d~k~~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~~r~~~ 790 (1184)
T 1i84_S 711 EGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLK 790 (1184)
T ss_dssp HHHHHHHHSCCEEEEHHHHHHHTTTTCTTTSCSSCCCHHHHHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHHHHHHH
T ss_pred HHHHhHhhcCcccccHHHHHHHHHHhccccCCcCCCCHHHHHHHHHHHcCCCccceeEcCeEEEEechHHHHHHHHHHHH
Confidence 999999999999999999999999999876543 468899999999998764 89999999999999999999999999
Q ss_pred cchhHHHHHHHhhhcccchhhhchh---hhHHHHHHHHHhhhhhhhhh
Q 001113 374 LGRSASIIQRKVRSYLSRKNYIMLR---RSAIHIQAACRGQLARTVYE 418 (1154)
Q Consensus 374 l~~~a~~IQ~~~R~~~~Rk~y~~~r---~a~i~IQ~~~Rg~lar~~~~ 418 (1154)
+..+++.||++||||++|++|.+++ .|++.||++||+|++++.|.
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999874 78889999999998876543
No 3
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=5.9e-108 Score=1019.92 Aligned_cols=417 Identities=41% Similarity=0.702 Sum_probs=377.6
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001113 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
|||+++|.++||+|++.+++|.++++++++||..+||||||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 388 gv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f 467 (837)
T 1kk8_A 388 GINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIF 467 (837)
T ss_dssp TSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHhcCcEEEcCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceEEEEecCCcccc
Confidence 79999999999999999999999999999999999999999999999999999999999976667899999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCccchhhcchhhhcCCCCChHH
Q 001113 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1154)
+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+| .||++||||||+ |.|||+||||||++|++||++
T Consensus 468 ~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~t 546 (837)
T 1kk8_A 468 DFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKS 546 (837)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHH
T ss_pred ccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHH
Confidence 999999999999999999999999999999999999999999999 699999999998 779999999999999999999
Q ss_pred HHHHHHH-HhcCCCCcCCCCCC------CCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccch
Q 001113 160 FAQKLYQ-TFKNHKRFSKPKLA------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLA 232 (1154)
Q Consensus 160 ~~~kl~~-~~~~~~~~~~p~~~------~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~ 232 (1154)
|++||+. ++++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+.||+...
T Consensus 547 f~~kl~~~~~~~~~~f~~p~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~ 626 (837)
T 1kk8_A 547 FQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPE 626 (837)
T ss_dssp HHHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHTCC--
T ss_pred HHHHHHHHhcCCCcCccCCCccccccccCCceEEeeccCcccccHHHHHHhccccccHHHHHHHHhchHHHHHHHhcccc
Confidence 9999764 56899999999864 6899999999999999999999999999999999999999999999998743
Q ss_pred hh-----ccCC--CCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcC
Q 001113 233 EE-----SSKT--SKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAG 305 (1154)
Q Consensus 233 ~~-----~~~~--~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g 305 (1154)
.. ..+. ++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|||+++|
T Consensus 627 ~~~g~~~~~k~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~G 706 (837)
T 1kk8_A 627 EPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKG 706 (837)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCC
T ss_pred cccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHccCCeeeeeeCCCccCCcccccchheeeeccccCccHHHHHHHHh
Confidence 21 1111 3468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccChHHHHHHHhhhhhcccCC-CchhHHHHHHHHhhcCCC--CcccccceeeeeccccchhhhhhhhccchhHHHHH
Q 001113 306 YPTRKPFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQ 382 (1154)
Q Consensus 306 yp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r~~~l~~~a~~IQ 382 (1154)
||+|++|.+|+.||++|+|...+. ..|.+++|+.||..++++ +|++|+||||||+|+++.||.+|.+++..+++.||
T Consensus 707 fp~R~~f~eF~~RY~~L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ 786 (837)
T 1kk8_A 707 FPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQ 786 (837)
T ss_dssp SCEEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999986543 468999999999998875 89999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhch---hhhHHHHHHHHHhhhhhhhhh
Q 001113 383 RKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTVYE 418 (1154)
Q Consensus 383 ~~~R~~~~Rk~y~~~---r~a~i~IQ~~~Rg~lar~~~~ 418 (1154)
++||||++|++|.++ |.|+++||++||||++|+.|.
T Consensus 787 a~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 787 AHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 999999999999998 688899999999998876554
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=8.6e-106 Score=995.72 Aligned_cols=399 Identities=45% Similarity=0.773 Sum_probs=374.7
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001113 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
|||+++|.++||+|++.+++|.++++++++||..+||||||+||++||+|||.+||.+|+.+.....+||||||||||+|
T Consensus 365 gv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f 444 (795)
T 1w7j_A 365 GVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETF 444 (795)
T ss_dssp TCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccceEEeeccCccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCChHHH
Q 001113 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1154)
+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++||||||+| .|||+||||||++|++||++|
T Consensus 445 ~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f 523 (795)
T 1w7j_A 445 EINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTW 523 (795)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHH
T ss_pred CcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 699999999999999999999
Q ss_pred HHHHHHHh-cCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcC-Ccccccccccchhh----
Q 001113 161 AQKLYQTF-KNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASK-CSFVSSLFLPLAEE---- 234 (1154)
Q Consensus 161 ~~kl~~~~-~~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~-~~~v~~lf~~~~~~---- 234 (1154)
++||+.+| ++|++|.+|+.+...|+|+||||+|+|+++||++||+|+++++++.+|++|+ ++||+.||+.....
T Consensus 524 ~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~ 603 (795)
T 1w7j_A 524 AQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 603 (795)
T ss_dssp HHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSSCSHHHHTTC---------
T ss_pred HHHHHHHhhccCCccccCCCCCCceEEEecceEEEEechhHHhhccccccHHHHHHHHhccccHHHHHHhcccccccccc
Confidence 99999998 9999999999988999999999999999999999999999999999999999 99999999864210
Q ss_pred -----------------------ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhh
Q 001113 235 -----------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLR 291 (1154)
Q Consensus 235 -----------------------~~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr 291 (1154)
..+..+++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++|||
T Consensus 604 ~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr 683 (795)
T 1w7j_A 604 SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLR 683 (795)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCTTCCTTCCCHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCcCChhhcCcccccchhh
Confidence 011235689999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHhcCCCCccChHHHHHHHhhhhhcccCCCchhHHHHHHHHhhcCC--CCcccccceeeeeccccchhhhh
Q 001113 292 CGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDAR 369 (1154)
Q Consensus 292 ~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~qiG~TkVFlr~~~~~~Le~~ 369 (1154)
|+||+|+|||+++|||+|++|.+|+.||++|+|...... |.+++|+.||..+++ ++|++|+||||||+|+++.||.+
T Consensus 684 ~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~-d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~ 762 (795)
T 1w7j_A 684 ACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLS-DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKI 762 (795)
T ss_dssp HTTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSCGGGCCS-CHHHHHHHHHHHHCCCGGGEEECSSEEEECTTHHHHHHHH
T ss_pred hCChHHHHHHHHcCCCccccHHHHHHHHHHhCCcccCCC-CHHHHHHHHHHHhCCCccceEEcCceEEEchhHHHHHHHH
Confidence 999999999999999999999999999999999765554 899999999999865 48999999999999999999999
Q ss_pred hhhccchhHHHHHHHhhhcccchhhhchhhhH
Q 001113 370 RTEVLGRSASIIQRKVRSYLSRKNYIMLRRSA 401 (1154)
Q Consensus 370 r~~~l~~~a~~IQ~~~R~~~~Rk~y~~~r~a~ 401 (1154)
|.+++..+++.||++||||++|++|+++|.|+
T Consensus 763 r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 763 RADKLRAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998875
No 5
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1e-104 Score=1006.47 Aligned_cols=412 Identities=36% Similarity=0.597 Sum_probs=376.8
Q ss_pred CCCHHHHHHHHhhceEe-----eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001113 1 MCDAKALEDSLCKREIV-----TRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~ 75 (1154)
|||+++|.++||+|++. ++||.++++++++||..+||||||+||++||+|||++||.+|..+ ....+|||||||
T Consensus 380 gv~~~~L~~aLt~r~~~~~~~~~~~e~i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~-~~~~~IGILDI~ 458 (1052)
T 4anj_A 380 GLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE-TSSYFIGVLDIA 458 (1052)
T ss_dssp TCCHHHHHHHHHEEC-------------CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS-CCSEEEEEEECC
T ss_pred CCCHHHHHHHHhhceeeecccccCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccceEEEEecC
Confidence 79999999999999885 579999999999999999999999999999999999999999865 456899999999
Q ss_pred CCcccCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCC
Q 001113 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1154)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~ 155 (1154)
|||+|+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+|.||++|||||+++|.|||+||||||++|++
T Consensus 459 GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~ 538 (1052)
T 4anj_A 459 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQP 538 (1052)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSC
T ss_pred CCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccc
Q 001113 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1154)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1154)
||++|++||++.|++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++++|++|+++||+
T Consensus 539 tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~~~~i~ 618 (1052)
T 4anj_A 539 SDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIR 618 (1052)
T ss_dssp CHHHHHHHHHHTTTTCTTEECGGGCSCSTTTTCCTTSEEEEEETTEEEEEECTTHHHHHBCCCCHHHHHHHHTCSCHHHH
T ss_pred cHHHHHHHHHHHhccCccccCCcccccccccccCCCCCeEEEcCCccEEEecCChhhhccccccHHHHHHHHhCCcHHHH
Confidence 9999999999999999999887643 357999999999999999999999999999999999999999999
Q ss_pred cccccchhhcc------CCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhH
Q 001113 226 SLFLPLAEESS------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAI 299 (1154)
Q Consensus 226 ~lf~~~~~~~~------~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~i 299 (1154)
.||+....... ++.++.||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|
T Consensus 619 ~Lf~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvLE~i 698 (1052)
T 4anj_A 619 ELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 698 (1052)
T ss_dssp HTTCC----------------CCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHHTHHHHH
T ss_pred HhhhccccccccccCCCCCCCCccHHHHHHHHHHHHHHHHcCcCCEEEEEECCCccCCCCcCCHHHHHHHHHHhhHHHHH
Confidence 99986532211 123567999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHHhhhhhcccCCCchhHHHHHHHHhhcCCC--Ccccccceeeeeccccchhhhhhhhccchh
Q 001113 300 RISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRS 377 (1154)
Q Consensus 300 ri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r~~~l~~~ 377 (1154)
||+++|||+|++|.+|+.||++|+|.... ..|++++|+.||+.++++ +|++|+||||||+|+++.||.+|..++..+
T Consensus 699 rI~r~Gyp~R~~f~eF~~RY~~L~~~~~~-~~d~k~~~~~iL~~l~l~~~~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~ 777 (1052)
T 4anj_A 699 DLMQGGFPSRASFHELYNMYKKYMPDKLA-RLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHL 777 (1052)
T ss_dssp HHTTTCCCEEEEHHHHHHHHHTTSCSSGG-GSCHHHHHHHHHHHTSCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHH
T ss_pred HHHhcCCCCcCcHHHHHHHHHHhCccccc-CCCHHHHHHHHHHHcCcCcccEEecCCEEeeCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997654 368899999999999875 899999999999999999999999999999
Q ss_pred HHHHHHHhhhcccchhhhchhhhHHHHHHHHHhhhhhh
Q 001113 378 ASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLART 415 (1154)
Q Consensus 378 a~~IQ~~~R~~~~Rk~y~~~r~a~i~IQ~~~Rg~lar~ 415 (1154)
++.||+ +|||++|++|++++.+++.||..+|++..|+
T Consensus 778 ~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~ 814 (1052)
T 4anj_A 778 AELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRA 814 (1052)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998885 7999999999999999999999998876654
No 6
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1.4e-102 Score=995.70 Aligned_cols=420 Identities=35% Similarity=0.632 Sum_probs=385.5
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CCcccccccccCCcc
Q 001113 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN-SKSLIGVLDIYGFES 79 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-~~~~IgvLDi~GFE~ 79 (1154)
|||+++|.++||+|++.+++|.|++++++++|..+||||||+||++||+|||.+||.+|++... ...+||||||||||+
T Consensus 360 gv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~GFE~ 439 (995)
T 2ycu_A 360 GLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEI 439 (995)
T ss_dssp TCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCSEEEEEEECCCBCC
T ss_pred CCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEeccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999986554 679999999999999
Q ss_pred cCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhc--CccchhhcchhhhcCCCCC
Q 001113 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEK--KPGGIIALLDEACMFPRST 156 (1154)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~-~dn~~~ldlie~--~~~Gil~lLdee~~~p~~t 156 (1154)
|+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+| .||++|||||++ +|.|||+||||||++|++|
T Consensus 440 f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~t 519 (995)
T 2ycu_A 440 FQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKAT 519 (995)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCC
T ss_pred cccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999 699999999998 4889999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCCCC--CCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhh
Q 001113 157 HETFAQKLYQTFKNHKRFSKPKLA--RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE 234 (1154)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~~~--~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~ 234 (1154)
|.+|++||+..|++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+.||+.....
T Consensus 520 D~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~v~~lf~~~~~~ 599 (995)
T 2ycu_A 520 DKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGI 599 (995)
T ss_dssp HHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHTSSCCSS
T ss_pred hHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCccccccchhhhccccccHHHHHHHHhCcHHHHHHHhhccccc
Confidence 999999999999999999999864 589999999999999999999999999999999999999999999999864310
Q ss_pred ----------------ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhh
Q 001113 235 ----------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEA 298 (1154)
Q Consensus 235 ----------------~~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~ 298 (1154)
..++++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+
T Consensus 600 ~~~~~~~~~~~~~~g~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~ 679 (995)
T 2ycu_A 600 VGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEG 679 (995)
T ss_dssp CSCCC-------------CCCSSCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCTTTHHHHHHHHTHHHH
T ss_pred ccccccccccccccccCcCCCCCCchHHHHHHHHHHHHHHHHhcCcceeeeecCCccccccccCHHHHHHHhcccchHHH
Confidence 0112356899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccChHHHHHHHhhhhhcccCC-CchhHHHHHHHHhhcCCC--Ccccccceeeeeccccchhhhhhhhccc
Q 001113 299 IRISCAGYPTRKPFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLG 375 (1154)
Q Consensus 299 iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r~~~l~ 375 (1154)
|||+++|||+|++|.+|+.||++|+|...+. ..|.+++|+.||..++++ +|++|+||||||+|+++.||.+|.+++.
T Consensus 680 iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~~~~LE~~R~~~l~ 759 (995)
T 2ycu_A 680 IRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERASEQT 759 (995)
T ss_dssp HHHHHHSCCEEEEHHHHHHHHGGGSTTTSCSCCCCSCCSCCCSCCCSSEEESSEEEESSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCChhheeecceEEEEecchhhhHHHHHHHHhh
Confidence 9999999999999999999999999886543 467899999999988764 8999999999999999999999999887
Q ss_pred hh-----HHHHHHHhhhcccchhhhchhhhHHHHHHHHHhhhhhhhhhhc
Q 001113 376 RS-----ASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESM 420 (1154)
Q Consensus 376 ~~-----a~~IQ~~~R~~~~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~ 420 (1154)
.+ |..++.|+|+..++..+++.+.++..||+.+||+.+++.....
T Consensus 760 ~~eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekp 809 (995)
T 2ycu_A 760 KSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP 809 (995)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc
Confidence 65 4456777888888877888888888888888887776655443
No 7
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=1.4e-100 Score=974.85 Aligned_cols=419 Identities=39% Similarity=0.674 Sum_probs=382.3
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001113 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
|||+++|.++||+|++.+++|.|++++++++|..+||||||+||++||+|||.+||.+|+++. ...+||||||||||+|
T Consensus 383 gv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~~-~~~~IgvLDI~GFE~f 461 (1010)
T 1g8x_A 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSER-KAYFIGVLDISGFEIF 461 (1010)
T ss_dssp TSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS-CSEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cCceeeeccCcccccC
Confidence 799999999999999999999999999999999999999999999999999999999998765 7889999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhc-CccchhhcchhhhcCCCCChH
Q 001113 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEK-KPGGIIALLDEACMFPRSTHE 158 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~-~dn~~~ldlie~-~~~Gil~lLdee~~~p~~td~ 158 (1154)
+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+| .||++|||||++ +|.|||+||||||++|++||+
T Consensus 462 ~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~ 541 (1010)
T 1g8x_A 462 KVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDN 541 (1010)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHH
T ss_pred CcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChH
Confidence 999999999999999999999999999999999999999999999 599999999998 488999999999999999999
Q ss_pred HHHHHHHHHhc-CCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchh--hc
Q 001113 159 TFAQKLYQTFK-NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE--ES 235 (1154)
Q Consensus 159 ~~~~kl~~~~~-~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--~~ 235 (1154)
+|++||+++++ +|++|.+|+.+...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+.||+.... ..
T Consensus 542 ~f~~kl~~~~~~~~~~f~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~~~lf~~~~~~~~~ 621 (1010)
T 1g8x_A 542 TLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRA 621 (1010)
T ss_dssp HHHHHHHHHHTTTCTTEECCTTCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHCHHHHSCC
T ss_pred HHHHHHHHHhcCCCCCcccCCCCCCCEEEeeeceEEEEeecCccccccccccHHHHHHHHhCcHHHHHHHhcccccccCC
Confidence 99999999999 9999999998888999999999999999999999999999999999999999999999987531 12
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHH
Q 001113 236 SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEF 315 (1154)
Q Consensus 236 ~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F 315 (1154)
.+.++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|||+++|||+|++|.+|
T Consensus 622 ~k~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F 701 (1010)
T 1g8x_A 622 KKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701 (1010)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHHHTTSEEEEEEEECSCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHTTSCCEEEEHHHH
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhcCCeeeeeecCCcccccCCcChhhcchhcccCccHHHHHHHHhCCcccccHHHH
Confidence 23345689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccCCCchhHHHHHHHHhhcCCC--CcccccceeeeeccccchhhhhhhhccchhHHHHHHHhhhcccchh
Q 001113 316 VDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKN 393 (1154)
Q Consensus 316 ~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~~~Rk~ 393 (1154)
+.||++|+|....+..|.+++|+.||..++++ +|++|+||||||+|+++.||.+|.+++..+++.||-..|
T Consensus 702 ~~RY~~L~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~l~~LE~~R~~~l~~~~~~iQY~~~------- 774 (1010)
T 1g8x_A 702 VKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKR------- 774 (1010)
T ss_dssp HHHHGGGSTTCCTTCSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhCCCCCcCCCCHHHHHHHHHHHcCCCccceeehhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 99999999983223568999999999999875 899999999999999999999999999999998884322
Q ss_pred hhchhhhHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHH
Q 001113 394 YIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMY 436 (1154)
Q Consensus 394 y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~ 436 (1154)
+..++.++|+..++...+ ....+...||+.++.|
T Consensus 775 -------a~~L~~WIr~kqa~l~~r--~~~~sl~~IQ~ll~~f 808 (1010)
T 1g8x_A 775 -------ANELVQWINDKQASLESR--DFGDSIESVQSFMNAH 808 (1010)
T ss_dssp -------HHHHHHHHHHHHHHHHCC--CCCSSHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHhh--hccccHHHHHHHHHHH
Confidence 234556777666643332 2335677788777755
No 8
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=8.2e-100 Score=930.44 Aligned_cols=373 Identities=38% Similarity=0.655 Sum_probs=334.5
Q ss_pred CCCHHHHHHHHhhceEeeC----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccC
Q 001113 1 MCDAKALEDSLCKREIVTR----DETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYG 76 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~----~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~G 76 (1154)
|||+++|.++||+|++.++ +|.++++++++||..+||||||+||++||+|||.+||.+|+.+.....+||||||||
T Consensus 310 gv~~~~L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~G 389 (697)
T 1lkx_A 310 KTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTTEKGPVIGILDIYG 389 (697)
T ss_dssp TSCHHHHHHHHHBCC----------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCEEEEEECCC
T ss_pred CCCHHHHHHHHhccEEeeccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Confidence 7999999999999999999 999999999999999999999999999999999999999997766789999999999
Q ss_pred CcccCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCCC
Q 001113 77 FESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRST 156 (1154)
Q Consensus 77 FE~f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~t 156 (1154)
||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++|||||++||.|||+||||||++|++|
T Consensus 390 FE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~t 469 (697)
T 1lkx_A 390 FEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKST 469 (697)
T ss_dssp CCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCC
T ss_pred ccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCC------CCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCccccccccc
Q 001113 157 HETFAQKLYQTFKNHKRFSKPK------LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLP 230 (1154)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~------~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~ 230 (1154)
|++|++||++++++|++|.+|+ .+...|+|+||||+|+|+++||++||+|+++++++++|++|+++||+.||+.
T Consensus 470 D~~f~~kl~~~~~~~~~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~l~~lf~~ 549 (697)
T 1lkx_A 470 DQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPP 549 (697)
T ss_dssp HHHHHHHHHHHSSSSTTEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCSHHHHHHCC-
T ss_pred hHHHHHHHHHHhcCCCccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccHHHHHHHhccchHHHHHhccc
Confidence 9999999999999999999865 2357999999999999999999999999999999999999999999999987
Q ss_pred chhhccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCcc
Q 001113 231 LAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRK 310 (1154)
Q Consensus 231 ~~~~~~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~ 310 (1154)
... ..+..+++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|||+++|||+|+
T Consensus 550 ~~~-~~~~~r~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~ 628 (697)
T 1lkx_A 550 TRP-EDSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRI 628 (697)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHHTSHHHHHHHHHSCSBCC
T ss_pred ccc-ccccCCCCcHHHHHHHHHHHHHHHHHccCCcceEeecCCCcCCCCCcChhhccccCcccccHHHHHHHhcCCCccc
Confidence 532 2233467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhhcccCC-CchhHHHHHHHHhhcCCC--Ccccccceeeeecc-ccchhhhhhhhcc
Q 001113 311 PFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAG-QMADLDARRTEVL 374 (1154)
Q Consensus 311 ~~~~F~~ry~~l~~~~~~~-~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~-~~~~Le~~r~~~l 374 (1154)
+|.+|+.||++|+|..++. ..|++++|+.||..++++ +|++|+||||||++ .++.||.+|.+++
T Consensus 629 ~~~eF~~RY~~L~~~~~~~~~~~~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~l~~LE~~R~~~l 696 (697)
T 1lkx_A 629 EYTRFYNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRELEM 696 (697)
T ss_dssp BSHHHHTTSCSSSCC---------CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHHHHHTCC----
T ss_pred cHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcCcEEeCCeeEEEeCCchHHHHHHHHHhhC
Confidence 9999999999999875432 357899999999999876 89999999999996 7899999998765
No 9
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=1.3e-99 Score=932.38 Aligned_cols=377 Identities=42% Similarity=0.743 Sum_probs=315.2
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001113 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
|||+++|.++||+|++.+++|.++++++++||..+||||||+||++||+|||.+||.+|+.... ..+||||||||||+|
T Consensus 383 gv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~-~~~IGvLDI~GFE~F 461 (770)
T 1w9i_A 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK-AYFIGVLDIYGFEIF 461 (770)
T ss_dssp TCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC-SEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCeeeeccCcccccc
Confidence 7999999999999999999999999999999999999999999999999999999999986555 899999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcC-ccchhhcchhhhcCCCCChH
Q 001113 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKK-PGGIIALLDEACMFPRSTHE 158 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~-~dn~~~ldlie~~-~~Gil~lLdee~~~p~~td~ 158 (1154)
+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+| .||++|||||+++ |.|||+||||||++|++||+
T Consensus 462 ~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~ 541 (770)
T 1w9i_A 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDN 541 (770)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHH
T ss_pred ccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChH
Confidence 999999999999999999999999999999999999999999999 5999999999984 88999999999999999999
Q ss_pred HHHHHHHH-HhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhh--c
Q 001113 159 TFAQKLYQ-TFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE--S 235 (1154)
Q Consensus 159 ~~~~kl~~-~~~~~~~~~~p~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~--~ 235 (1154)
+|++||+. ++++|++|.+|+.+...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+.||+..... .
T Consensus 542 ~f~~kL~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~~~~~~ 621 (770)
T 1w9i_A 542 TLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRA 621 (770)
T ss_dssp HHHHHHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCSSTTHHHHHHCHHHHCCC
T ss_pred HHHHHHHHHhcCCCCCccCCCCCCCceEeeccCccccccccChhhhccCcccHHHHHHHHhchHHHHHHHhhccCCCCCC
Confidence 99999765 46899999999988899999999999999999999999999999999999999999999999864321 1
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHH
Q 001113 236 SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEF 315 (1154)
Q Consensus 236 ~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F 315 (1154)
.++++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|||+++|||+|++|.+|
T Consensus 622 ~k~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF 701 (770)
T 1w9i_A 622 KKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701 (770)
T ss_dssp EETTEECCHHHHHHHHHHHHHHHHHTSEEEEEEEECSCSSCCSSCCCHHHHHHHHHHSSHHHHHHHTTSSCCEEEESCC-
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHhcCceeeeeecCCcccccCccCchhhHhHhcccchHHHHHHHHhcCcccccHHHH
Confidence 12234689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccC-CCchhHHHHHHHHhhcCCC--CcccccceeeeeccccchhhhhhhhccchhHH
Q 001113 316 VDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSAS 379 (1154)
Q Consensus 316 ~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r~~~l~~~a~ 379 (1154)
+.||++|+| .++ +..|.+++|+.||..++++ +|++|+||||||+|+++.||.+|.+++..+++
T Consensus 702 ~~RY~~L~~-~~~~~~~d~k~~~~~lL~~~~~~~~~~~~G~TKVF~r~~~l~~LE~~R~~~l~~~~~ 767 (770)
T 1w9i_A 702 VKRYYLLAP-NVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARIEEARELRGDYKDD 767 (770)
T ss_dssp -----------------------------------CCCCCSSEEEECTTTTTC--------------
T ss_pred HHHHHHhcc-ccccCCCCHHHHHHHHHHhcCCCcccEEeCCeeEEecccHHHHHHHHHHHHHHHHhc
Confidence 999999998 443 3458899999999998775 89999999999999999999999999887654
No 10
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=6.8e-100 Score=938.06 Aligned_cols=374 Identities=40% Similarity=0.720 Sum_probs=318.1
Q ss_pred CCCHHHHHHHHhhceEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001113 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1154)
|||+++|.++||+|++.+++|.++++++++||..+||||||+||++||+|||.+||.+|+++....++||||||||||+|
T Consensus 389 gv~~~~L~~aL~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f 468 (783)
T 4db1_A 389 GLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIF 468 (783)
T ss_dssp TCCHHHHHHHHHSCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSEEEEEEECCCCCCC
T ss_pred CCCHHHHHHhhcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEecccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987667899999999999999
Q ss_pred CCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCccchhhcchhhhcCCCCChHH
Q 001113 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1154)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1154)
+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+| .||++||||||+ |.|||+||||||++|++||++
T Consensus 469 ~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~t 547 (783)
T 4db1_A 469 DFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMT 547 (783)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999 599999999997 679999999999999999999
Q ss_pred HHHHHHHHh-cCCCCcCCCCCC----CCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccccccccchhh
Q 001113 160 FAQKLYQTF-KNHKRFSKPKLA----RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE 234 (1154)
Q Consensus 160 ~~~kl~~~~-~~~~~~~~p~~~----~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~ 234 (1154)
|++||+++| ++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+.||+.....
T Consensus 548 f~~kl~~~~~~~~~~f~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~lf~~~~~~ 627 (783)
T 4db1_A 548 FKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGA 627 (783)
T ss_dssp HHHHHHHHHTTTCTTEECCCC----C-CCEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHHHSCC--
T ss_pred HHHHHHHHhcCCCCCccCCCCCCCCCCCCeEEeCcCCceEEeCcChhhhccccccHHHHHHHHHCccHHHHHHhhccccc
Confidence 999999987 899999999864 578999999999999999999999999999999999999999999999864211
Q ss_pred -----c-----cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhHHHHhc
Q 001113 235 -----S-----SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCA 304 (1154)
Q Consensus 235 -----~-----~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~ 304 (1154)
+ .+.+.++||+++||.||+.||++|++|+||||||||||+.|.|+.||..+|++||||+||+|+|||+++
T Consensus 628 ~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~ 707 (783)
T 4db1_A 628 DAPIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRK 707 (783)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHHT
T ss_pred cccccCccCCCCcCCCCccHHHHHHHHHHHHHHHHHccCCEEEEeeCCCcccCCCcccchhhheeccccChHhheeehhc
Confidence 0 112245899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccChHHHHHHHhhhhhcccCCC--chhHHHHHHHHhhcCCC--Ccccccceeeeeccccchhhhhhhhccc
Q 001113 305 GYPTRKPFDEFVDRFGILASKVLDGS--SDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLG 375 (1154)
Q Consensus 305 gyp~r~~~~~F~~ry~~l~~~~~~~~--~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r~~~l~ 375 (1154)
|||+|++|.+|+.||++|+|..++.. .|.+++|+.||..++++ +|++|+||||||+|+++.||.+|.+++.
T Consensus 708 Gyp~R~~f~eF~~RY~~L~~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVFlr~g~~~~LE~~R~~~l~ 782 (783)
T 4db1_A 708 GFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLS 782 (783)
T ss_dssp SCCEEEEC--------------------------CCHHHHSSSSCGGGEEECSSEEEECTTHHHHHHHHC-----
T ss_pred CCCccCcHHHHHHHHHHhCccccCCCCCCCHHHHHHHHHHhCCCCcCeEEECCEEEEECcCHHHHHHHHHHHHhc
Confidence 99999999999999999999865432 58899999999999875 7999999999999999999999998765
No 11
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=6.2e-99 Score=934.92 Aligned_cols=386 Identities=38% Similarity=0.635 Sum_probs=347.4
Q ss_pred CCCHHHHHHHHhhceEe-----eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001113 1 MCDAKALEDSLCKREIV-----TRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1154)
Q Consensus 1 ~~~~~~l~~~l~~r~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~ 75 (1154)
|||+++|.++||+|++. ++|+.++++++++||..+||||||+||++||+|||.+||.+|... ....+|||||||
T Consensus 376 gv~~~~L~~aL~~r~~~t~~g~~~ge~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~IGvLDI~ 454 (784)
T 2v26_A 376 GLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE-TSSYFIGVLDIA 454 (784)
T ss_dssp TCCHHHHHHHHHEEEC-----------CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS-CCSEEEEEEECC
T ss_pred CCCHHHHHHHHhhcEEeccccCCCCCeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccceeeecccC
Confidence 79999999999999998 679999999999999999999999999999999999999999754 457899999999
Q ss_pred CCcccCCCchhHHHhhhhhHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCccchhhcchhhhcCCCC
Q 001113 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1154)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~vf~~eqeey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~ 155 (1154)
|||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++|||||++||.|||+||||||++|++
T Consensus 455 GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~ 534 (784)
T 2v26_A 455 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQP 534 (784)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSC
T ss_pred CcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCceEEEeeCcceEEeccchhhhcchhhhHHHHHHHhhcCCcccc
Q 001113 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1154)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1154)
||++|++||++++++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+
T Consensus 535 tD~~f~~kl~~~~~~~~~~~~p~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~l~ 614 (784)
T 2v26_A 535 SDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIR 614 (784)
T ss_dssp CHHHHHHHHHHHTTTCTTEECGGGCSSGGGTTSCTTSEEEEEETTEEEEEECTTHHHHTBCCCCHHHHHHHHTCSCHHHH
T ss_pred ChHHHHHHHHHHhCCCcccccCCCccccccccccCCCceEeeecCccEeeeccCHHHhccchhhHHHHHHHHhchhhHHH
Confidence 9999999999999999999988753 358999999999999999999999999999999999999999999
Q ss_pred cccccchhhc------cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhhhH
Q 001113 226 SLFLPLAEES------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAI 299 (1154)
Q Consensus 226 ~lf~~~~~~~------~~~~k~~tv~~~f~~sl~~L~~~l~~t~~hfirCikPN~~~~~~~fd~~~v~~QLr~~gvle~i 299 (1154)
.||+.....+ .+..+++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|
T Consensus 615 ~Lf~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~i 694 (784)
T 2v26_A 615 ELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 694 (784)
T ss_dssp HHC----------------CCCCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHTTHHHHH
T ss_pred HHcccccccccCcccCCCCCccccHHHHHHHHHHHHHHHHHccCCeeEEEecCCcccccCccccccccccccccccHHHH
Confidence 9998652111 1122458999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHHhhhhhcccCCCchhHHHHHHHHhhcCCC--Ccccccceeeeeccccchhhhhhhhccchh
Q 001113 300 RISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRS 377 (1154)
Q Consensus 300 ri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~qiG~TkVFlr~~~~~~Le~~r~~~l~~~ 377 (1154)
||+++|||+|++|.+|+.||++|+|.... ..|+++.|+.||..++++ +|++|+||||||+|+++.||+++.......
T Consensus 695 ri~r~Gyp~R~~f~eF~~RY~~L~~~~~~-~~d~~~~~~~ll~~~~~~~~~~~~G~TKVF~r~g~~~~le~~~~~~~~~~ 773 (784)
T 2v26_A 695 DLMQGGFPSRASFHELYNMYKKYMPDKLA-RLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHL 773 (784)
T ss_dssp HHHTSCCSEEEEHHHHHHHHGGGCCHHHH-TSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHH
T ss_pred HHHHhcCCccccHHHHHHHHhhcCCcccC-CCCHHHHHHHHHHHcCCCcCcEEeCCceEEEcCCHHHHHHHHHhhCHHHH
Confidence 99999999999999999999999986543 358899999999999875 899999999999999999999866554444
Q ss_pred HHHHHHHhhhcc
Q 001113 378 ASIIQRKVRSYL 389 (1154)
Q Consensus 378 a~~IQ~~~R~~~ 389 (1154)
+. |++.+|+|+
T Consensus 774 ~~-ii~~v~~wl 784 (784)
T 2v26_A 774 AE-LVKRVNHWL 784 (784)
T ss_dssp HH-HHHHHHHHC
T ss_pred HH-HHHHHHhhC
Confidence 43 456777774
No 12
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-61 Score=562.19 Aligned_cols=360 Identities=16% Similarity=0.273 Sum_probs=285.0
Q ss_pred hHHHHhhhHHh---hhhcHHHHHHHhh-hcCCC-----CCCCCchHHHHHHHHh-hhcc-hhhhhHHHHHHHHHHHHHhh
Q 001113 738 DSKLRRSHIEH---QHENVDALINCVA-KNLGY-----CNGKPVAAFTIYKCLL-HWKS-FEAERTSVFDRLIQMIGSAI 806 (1154)
Q Consensus 738 ~~~~~~~l~e~---~~e~~~~li~~l~-~~~~~-----~~~~p~~A~il~~c~~-~~~~-~~~e~~~ll~~ii~~i~~~i 806 (1154)
..+..++|.+- ..|+.++||+.+. +.++. ...+++|||+||+|++ ||+. +..+.+.+|++++++|++++
T Consensus 6 ~~~~~~ll~~~~~~~~ei~~~l~~~~~ip~~~~~~~~~~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v 85 (419)
T 2f6h_X 6 NEELYRLLEDTEILNQEITEGLLKGFEVPDAGVAIQLSKRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVV 85 (419)
T ss_dssp HHHHHHHHHCHHHHHHHHHHTTTTTCCCCCCSTTCCCCHHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhhhhccHHHHHHHHHHccCCCCccccCCCCCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 45678888422 2344444444333 34442 1234589999999999 9998 88899999999999999999
Q ss_pred ccc--CC-ccchhhHHHhHHHHHHHH--HHHhhhcCCCCCCCCCCCCCccchhhhhhcccCCCCCchhhhhHHhhHHHHh
Q 001113 807 ENE--DD-NDHMAYWLSNTSTLLFLL--QRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQ 881 (1154)
Q Consensus 807 ~~~--~d-~~~l~fWLSN~~~Ll~~l--q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1154)
+++ +| ++.++|||||+++||||| +++....+.. +..+. + +. .+.
T Consensus 86 ~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~~~~------~~~~~-----------~------~~-------~~~- 134 (419)
T 2f6h_X 86 TQLKGNDLIPSGVFWLANVRELYSFVVFALNSILTEET------FKNGM-----------T------DE-------EYK- 134 (419)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------C-----------C------HH-------HHH-
T ss_pred HhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhccCc------ccccc-----------c------hh-------hHH-
Confidence 876 34 588999999999999999 6664333221 00000 0 11 111
Q ss_pred hhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc---C--CCcCCCCCCcccHHHHHHH
Q 001113 882 VEAKYP--ALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLR---S--GRSFGKDSASSHWQSIIDS 954 (1154)
Q Consensus 882 v~~~~~--~~~f~q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~p~~~~~~~~~---~--~~~~~~~~~~~~~~~il~~ 954 (1154)
+|| +..|+++|.+++.+||++|+++++++|.|++++||+.|.+..+.... + ++.+. .++.++|++|+++
T Consensus 135 ---~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~p~l~paIl~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~Il~~ 210 (419)
T 2f6h_X 135 ---EYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQKKAINAVVISESLPGFSAGETSGFLNKIFA-NTEEYTMDDILTF 210 (419)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTTTC----------------CCCHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccccccccc-CCCccCHHHHHHH
Confidence 232 56899999999999999999999999999999999887665421110 0 12222 3446799999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHHHhHhhhccCCCCCCchhHHHhhchHHHHHHHhhcccccccchHHHhHH
Q 001113 955 LNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKH 1034 (1154)
Q Consensus 955 L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~ 1034 (1154)
|++++++|+.|+|||.+++|+|+|+||||||++||+||+|++||||++|+||||||+.||+||+++|+ +.+|++|+|
T Consensus 211 L~~~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~~~cs~s~G~qIr~nls~Le~W~~~~~l---~~a~~~L~~ 287 (419)
T 2f6h_X 211 FNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNVTRLEEWCKTHGL---TDGTECLQH 287 (419)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTC---TTHHHHTHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhHHHHHhhHHHHHHHHHHcCC---hhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999994 568899999
Q ss_pred HHHHHhHHhhcccccCCHHHHHhccCcCCCHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhhhcCCCC----------
Q 001113 1035 IRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDA---------- 1104 (1154)
Q Consensus 1035 l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ls~~Ql~kil~~Y~~d~~e~~~v~~~~i~~v~~~~~~~~~~~---------- 1104 (1154)
|+||++|||++||+..|++++ +++||+|||+||+||+++||||+|| ++||++||++|++++++++++.
T Consensus 288 l~Qa~~lLq~~k~~~~d~~~i-~~~C~~Ln~~Ql~~il~~Y~~d~~e-~~v~~~~i~~v~~~~~~~~~~~~~~~~~~~~~ 365 (419)
T 2f6h_X 288 LIQTAKLLQVRKYTIEDIDIL-RGICYSLTPAQLQKLISQYQVADYE-SPIPQEILRYVADIVKKEAALSSSGNDSKGHE 365 (419)
T ss_dssp HHHHHHHTTSCCSSHHHHHHH-HHHTTTSCHHHHHHHHHHCCCCTTS-CCCCHHHHHHHHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHhhCCCchhhHHHH-HHHhhcCCHHHHHHHHHhCCCccCC-CCCCHHHHHHHHHHHhcccccccccccccccc
Confidence 999999999999888777776 6999999999999999999999997 6999999999999999877542
Q ss_pred C-CCcccc--cCCCcccccCcccccccccccccCCC--cchhhh
Q 001113 1105 T-SNSFLL--DDNSSIPFSVDDLSNSLQEKDFLDVK--AAEELL 1143 (1154)
Q Consensus 1105 ~-~~~lll--D~~~~~Pf~~~~~~~~~~~~~~~~i~--~p~~l~ 1143 (1154)
. +++||| |.++.+||+.++. -.+++|+ ||+.|+
T Consensus 366 ~~~~~~ll~~d~~~~~Pf~~p~~------~~~~~i~~~iP~~l~ 403 (419)
T 2f6h_X 366 HSSSIFITPETGPFTDPFSLIKT------RKFDQVEAYIPAWLS 403 (419)
T ss_dssp ---CCSCCCCCCCCCCGGGGSCC------CCCCCCCCCCCTTCC
T ss_pred cccccccccCCcccCCCcCCCCc------CcHHHHHhhCCCccc
Confidence 1 268999 5555699998873 2777788 999875
No 13
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-54 Score=485.30 Aligned_cols=319 Identities=17% Similarity=0.192 Sum_probs=244.6
Q ss_pred HHHHhhhHHh---hhhcHHHHHHHhhhcCCCC-CCCCchHHHHHHHHh-hhcc-hhhhhHHHHHHHHHHHHHhhccc--C
Q 001113 739 SKLRRSHIEH---QHENVDALINCVAKNLGYC-NGKPVAAFTIYKCLL-HWKS-FEAERTSVFDRLIQMIGSAIENE--D 810 (1154)
Q Consensus 739 ~~~~~~l~e~---~~e~~~~li~~l~~~~~~~-~~~p~~A~il~~c~~-~~~~-~~~e~~~ll~~ii~~i~~~i~~~--~ 810 (1154)
.+..++|.|- ..|..++||+. +|++..+ .....||||||+|++ +|++ +..++++|+..++++|++++++. +
T Consensus 17 ~el~~ll~d~~~~~~ei~~gl~~~-ip~~~~~~~evl~PA~ii~~~~~~m~~~gl~~~s~~fl~~v~~~I~~~v~~~~~~ 95 (386)
T 3mmi_A 17 PDLLELLMDLNCYTLEVTEGYLKK-VNVTEVNGDNVLGPIHVITTVVSSLVRNGLLIQSSKFISKVLLTVESIVMSLPKD 95 (386)
T ss_dssp -CHHHHHHCHHHHHHHHHHHTSTT-CCCSCCCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhc-CCCCCCCccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3455555443 35667777777 4444222 245688999999999 5665 77888999999999999999863 4
Q ss_pred C-ccchhhHHHhHHHHHHHH--HHHhhhcCCCCCCCCCCCCCccchhhhhhcccCCCCCchhhhhHHhhHHHHhhhccch
Q 001113 811 D-NDHMAYWLSNTSTLLFLL--QRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYP 887 (1154)
Q Consensus 811 d-~~~l~fWLSN~~~Ll~~l--q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 887 (1154)
| +..++|||||+++|++|+ +++ ....+ ++ .++ ..+
T Consensus 96 d~i~~g~FWLsN~~~l~sFv~~~q~----~~~~~---------------------------~~-d~y-~~l--------- 133 (386)
T 3mmi_A 96 ETMLGGIFWLSNLSRLPAFAANQKT----LYEAN---------------------------GG-DEK-DKL--------- 133 (386)
T ss_dssp THHHHHHHHHHHHTTHHHHHHHHHT----TC-------------------------------------CHH---------
T ss_pred cccccchHHHHhHHHHHHHHHHHHH----HHHcc---------------------------Ch-hHH-HHH---------
Confidence 5 899999999999999964 332 11000 00 001 111
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHH
Q 001113 888 ALLFKQQLAAYVE----KIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLK 963 (1154)
Q Consensus 888 ~~~f~q~L~~~~~----~iy~~l~~~~~~~l~~~L~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~ 963 (1154)
...+++.|.++.. +||++|+++++++|+|++ |++...+ .++.+. +++.++|++|+++|++++++|+
T Consensus 134 l~e~r~~l~~L~~~~~e~IY~~~i~~lkk~L~~il------P~~~~~~---~~k~~~-~~~~~s~~~Il~~L~~~~~~L~ 203 (386)
T 3mmi_A 134 TLIYLNDLENETLKVFDKIYSTWLVKFMKHASAHI------EIFDMVL---NEKLFK-NSGDEKFAKLFTFLNEFDAVLC 203 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------THHHHHT---CGGGSS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc------ccccccc---cccccC-CCCccCHHHHHHHHHHHHHHHH
Confidence 1145566666666 999999999999999977 3332211 111122 3457899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhhHHHhHhhhccCCCCCCchhHHHhhchHHHHHHHhhcccccccchHHHhHHHHHHHhHHh
Q 001113 964 QNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLV 1043 (1154)
Q Consensus 964 ~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq 1043 (1154)
.|+|||.++.|+|+|+||||||++||+||+|++||||++|+||||||+.||+||++ + .+.++++|+||+||++|||
T Consensus 204 ~~~V~p~li~QlfsQLF~fIna~lFN~LLlRr~~cs~s~G~qIr~NLs~LEeW~~~-~---l~~a~~~L~~L~QA~~LLQ 279 (386)
T 3mmi_A 204 KFQVVDSMHTKIFNDTLKYLNVMLFNDLITKCPALNWKYGYEVDRNIERLVSWFEP-R---IEDVRPNLIQIIQAVKILQ 279 (386)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHTT-T---SSCCGGGGHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhHHHHHHHHccCcccCcchHHHHHhhHHHHHHHHHh-c---cHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999 6 4677899999999999999
Q ss_pred hcccccCCHHHHHhccCcCCCHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhhhcCCC-CCCCcccccCCC
Q 001113 1044 IHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSND-ATSNSFLLDDNS 1115 (1154)
Q Consensus 1044 ~~kk~~~~~~~i~~~~c~~Ls~~Ql~kil~~Y~~d~~e~~~v~~~~i~~v~~~~~~~~~~-~~~~~lllD~~~ 1115 (1154)
++|++..|.+.+ +++||+|||+||+|||++|+||+|.++|||++|+++|+++++++++. +..-.+|+|.++
T Consensus 280 ~~K~t~~Di~~i-~~~C~~Lsp~QL~kIL~~Y~p~~~~E~~V~~e~i~~v~~~lk~~~~~~~~~~~i~~~~~~ 351 (386)
T 3mmi_A 280 LKISNLNEFKLL-FDFWYALNPAQIQAILLKYKPANKGEAGVPNEILNYLANVIKRENLSLPGKMEIMLSAQF 351 (386)
T ss_dssp CCCCCHHHHHHH-HTTCCSSCHHHHHHHHHTBCCC-----CCCHHHHHHHHHHHHHHHHHCSSCCCSSCCCCC
T ss_pred cCCCCHHHHHHH-HHhcccCCHHHHHHHHHhCcCCCCCCCCCCHHHHHHHHHHHhcccccCCcchhhhhcccc
Confidence 997776655555 79999999999999999999999934799999999999999877542 334468888766
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.88 E-value=2.1e-21 Score=250.32 Aligned_cols=127 Identities=30% Similarity=0.300 Sum_probs=103.2
Q ss_pred cchhhhchhhhHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHh--hhhHHhHHHHHHHHHHHHHHHH
Q 001113 390 SRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDM--CFSAVCIQTGMRGMAARNELRF 467 (1154)
Q Consensus 390 ~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~--r~a~i~iQs~~Rg~~aR~~~~~ 467 (1154)
.+.+..++..+++.||++||||++|+.|.++| .||+.||++||||.+|+.|..+ ..|++.||+.|||+.+|+.+..
T Consensus 760 E~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r--~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~ 837 (1080)
T 2dfs_A 760 EKIRADKLRAACIRIQKTIRGWLMRKKYMRMR--RAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQC 837 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHH
Confidence 33344455678899999999999999988776 6889999999999999888755 4588899999999999988877
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001113 468 RRQTRASILIQSHCRKYLARLHYMKLK--KAAITTQCAWRGKVARRELRKLKMAA 520 (1154)
Q Consensus 468 ~~~~~aa~~IQ~~~R~~~~r~~~~~~~--~a~i~iQ~~~R~~~arr~l~~lk~~a 520 (1154)
.+ .+++.||++||++.+|+.|..++ .+++.||+.||++++|+.+..++.++
T Consensus 838 lr--~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aa 890 (1080)
T 2dfs_A 838 MR--DATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAI 890 (1080)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 65 58889999999999999888765 47888999999999998887655433
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.20 E-value=4.2e-11 Score=158.25 Aligned_cols=46 Identities=28% Similarity=0.464 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhccc-hhhhhhHHHHHHHHHHHHHHH
Q 001113 398 RRSAIHIQAACRGQLARTVYESMRR-EASCLRIQRDLRMYLAKKAYK 443 (1154)
Q Consensus 398 r~a~i~IQ~~~Rg~lar~~~~~~r~-~~AAi~IQ~~~R~~~~Rk~y~ 443 (1154)
..+++.||++||||++|+.|.++++ ..|+++||++||+|.+++.|.
T Consensus 792 ~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3455556666666666666555542 345555666666665555443
No 16
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.07 E-value=3.2e-11 Score=100.31 Aligned_cols=57 Identities=32% Similarity=0.487 Sum_probs=52.0
Q ss_pred hccchhHHHHHHHhhhcccchhhhchhhhHHHHHHHHHhhhhhhhhhhccchhhhhh
Q 001113 372 EVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLR 428 (1154)
Q Consensus 372 ~~l~~~a~~IQ~~~R~~~~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~ 428 (1154)
++++.+|+.||++||||++|+.|.+++.|++.||++|||+++|+.+..++++.||++
T Consensus 2 ~~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~aA~~ 58 (58)
T 2ix7_C 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAATT 58 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccC
Confidence 456789999999999999999999999999999999999999999999998888863
No 17
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.94 E-value=5.7e-10 Score=88.92 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHHHHHHHH
Q 001113 397 LRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAY 442 (1154)
Q Consensus 397 ~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y 442 (1154)
++.+++.||++|||+++|+.+..++++.||++||++||||.+|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 5778999999999999999999999888999999999999999987
No 18
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.92 E-value=1.4e-09 Score=90.28 Aligned_cols=54 Identities=37% Similarity=0.562 Sum_probs=48.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhhHH
Q 001113 422 REASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASI 475 (1154)
Q Consensus 422 ~~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~~~~~aa~ 475 (1154)
...||++||++||||.+|+.|..++.+++.||+.|||+.+|+.+..+++++||+
T Consensus 4 ~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~aA~ 57 (58)
T 2ix7_C 4 LRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAAT 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 347899999999999999999999999999999999999999999888887764
No 19
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.56 E-value=9.5e-08 Score=75.94 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=27.9
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 001113 446 CFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHY 490 (1154)
Q Consensus 446 r~a~i~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~ 490 (1154)
+.+++.||+.+||+++|+.+..++++.||+.||++||||.+|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 344444555555555555555555566777888888888777766
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=98.11 E-value=1.3e-06 Score=73.91 Aligned_cols=48 Identities=35% Similarity=0.419 Sum_probs=36.2
Q ss_pred hhhccchhHHHHHHHhhhcccchhhhch---hhhHHHHHHHHHhhhhhhhh
Q 001113 370 RTEVLGRSASIIQRKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTVY 417 (1154)
Q Consensus 370 r~~~l~~~a~~IQ~~~R~~~~Rk~y~~~---r~a~i~IQ~~~Rg~lar~~~ 417 (1154)
|++++...++.||+.+|||++|+.|.++ +.|+.+||+++|+|++++.+
T Consensus 1 Rd~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4566777788888888888888888877 67777888888888775443
No 21
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.92 E-value=4e-06 Score=70.55 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=29.8
Q ss_pred cchhHHHHHHHhhhcccchhhhch---hhhHHHHHHHHHhhhhhhh
Q 001113 374 LGRSASIIQRKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTV 416 (1154)
Q Consensus 374 l~~~a~~IQ~~~R~~~~Rk~y~~~---r~a~i~IQ~~~Rg~lar~~ 416 (1154)
+....+.||+.+|||++|+.|.++ +.|+.+||+++|+|++++.
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445667777777777777777777 6666677777777776544
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.77 E-value=0.0023 Score=64.87 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001113 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ 652 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~ 652 (1154)
..|...+..++..+.+|+..+++++...........++..+
T Consensus 98 ~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~k 138 (189)
T 2v71_A 98 SQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQR 138 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHH
Confidence 33444444444444444444444444333333333333333
No 23
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.54 E-value=4.9e-05 Score=64.11 Aligned_cols=48 Identities=27% Similarity=0.444 Sum_probs=39.0
Q ss_pred chhhhHHHHHHHHHhhhhhhhhhhccchh-hhhhHHHHHHHHHHHHHHH
Q 001113 396 MLRRSAIHIQAACRGQLARTVYESMRREA-SCLRIQRDLRMYLAKKAYK 443 (1154)
Q Consensus 396 ~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~-AAi~IQ~~~R~~~~Rk~y~ 443 (1154)
++...++.+|+.+||+++|+.+.++.... |+.+||+++|+|..++.+.
T Consensus 4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 34567899999999999999998876544 6669999999998877644
No 24
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.53 E-value=4e-05 Score=64.40 Aligned_cols=47 Identities=30% Similarity=0.439 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhccchh-hhhhHHHHHHHHHHHHHHH
Q 001113 397 LRRSAIHIQAACRGQLARTVYESMRREA-SCLRIQRDLRMYLAKKAYK 443 (1154)
Q Consensus 397 ~r~a~i~IQ~~~Rg~lar~~~~~~r~~~-AAi~IQ~~~R~~~~Rk~y~ 443 (1154)
+...++.+|+.+||+++|+.+.++.... |+.+||+++|+|..++.+.
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~ 50 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWA 50 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Confidence 4567889999999999999998876544 6669999999998876543
No 25
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.07 E-value=0.00022 Score=89.67 Aligned_cols=45 Identities=27% Similarity=0.447 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHhhhhhhhhhhccc-hhhhhhHHHHHHHHHHHHHHH
Q 001113 399 RSAIHIQAACRGQLARTVYESMRR-EASCLRIQRDLRMYLAKKAYK 443 (1154)
Q Consensus 399 ~a~i~IQ~~~Rg~lar~~~~~~r~-~~AAi~IQ~~~R~~~~Rk~y~ 443 (1154)
.+++.||++||||++|++|.+++. ..||++||++||+|.+||.|.
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 344445555555555555444432 234444555555554444433
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.06 E-value=0.089 Score=57.06 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK 659 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~ 659 (1154)
..++.|.+++..++..+..+++.+.++..++++++....+....+...+..
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666655555555555554444433
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.56 E-value=0.23 Score=70.57 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 511 RELRKLKMAARETGALQAAKNKLEKQVEEL 540 (1154)
Q Consensus 511 r~l~~lk~~a~~~~~L~~~~~~LE~kv~el 540 (1154)
.-+.+|.+++..++.+++....++.++++.
T Consensus 1924 ~GL~KL~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1924 IGLKKLRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777766655555554444
No 28
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.32 E-value=0.43 Score=47.17 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 001113 531 NKLEKQVEELTWRLQ 545 (1154)
Q Consensus 531 ~~LE~kv~el~~~l~ 545 (1154)
..||+++.|+...|.
T Consensus 9 ~~LekQL~E~n~kLk 23 (168)
T 3o0z_A 9 SQLQKQLEEANDLLR 23 (168)
T ss_dssp -CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555544
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.82 E-value=0.14 Score=62.64 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+.++++..++++..+.++.++.+.+++..+..++.+.+.++.+..++.++.-++.+.++++++..++.+++.+.++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666665566665566666666666666666777777777777777777664
No 30
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.81 E-value=1.4 Score=47.53 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001113 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQAL 654 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~ 654 (1154)
.++.+...+..++..+.++...+++++..+.+++....++...+.
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554444444444443
No 31
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.74 E-value=1 Score=64.24 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001113 622 KTLVSSLEKKIDETEKKFEETSKISEERLKQ-------ALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 622 e~~l~~l~~~l~ele~~~~e~~~~~~~~~~~-------l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
++++.++++++++++.+.+++..+++.+..+ +..+++-+..|..|..+-.+.+..++.+...+
T Consensus 2034 ~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2034 VATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 3334444444444444433333333333333 33344444556666666666666666665443
No 32
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.52 E-value=2.1 Score=42.10 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001113 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA 653 (1154)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l 653 (1154)
+.++..|...+.+.+.+.+..+.....+++....+...+
T Consensus 76 EeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L 114 (155)
T 2efr_A 76 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 33
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.49 E-value=1.7 Score=42.89 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001113 516 LKMAARETGALQAAKNKL 533 (1154)
Q Consensus 516 lk~~a~~~~~L~~~~~~L 533 (1154)
|+.+.+.+.++++...++
T Consensus 22 Lk~EsE~~~rlkK~~tEl 39 (168)
T 3o0z_A 22 LRTESDTAVRLRKSHTEM 39 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 344444444444443333
No 34
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.21 E-value=1.9 Score=43.65 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 001113 522 ETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQ 601 (1154)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~~~e~~~~~~~~ee~~~~~ 601 (1154)
++...+....++..++.+++..+.+=.....++|.....++..+.+++.+|+..+..+..+...-..++.....+
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e----- 85 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ----- 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 444455555555566666666666555555666666666776666666666666666555443333333322222
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 602 EVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1154)
Q Consensus 602 e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~ 675 (1154)
....+..|.+++..|....+.+...+.++|.....++.........+.+.+.++...-+.+.-|+.++.
T Consensus 86 -----~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 86 -----SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134567788888888888888888888888888888887777777777777777655555555544444
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.95 E-value=0.15 Score=62.32 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001113 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
+....+.++.++...+++.++..+..++++++..++..++++.++++.++++++..++.++.+|+++.
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 514 LKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444455555555555555555556666666666666655554
No 36
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=94.82 E-value=0.66 Score=44.95 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 001113 432 DLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKK 495 (1154)
Q Consensus 432 ~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~ 495 (1154)
-+..|+.+.+|.+...++..+=..-.-..- +..+++.||+.+|||++|+.|+....
T Consensus 14 kV~~WLi~sRWrK~q~~~lsvIKLknKI~y--------R~~~~i~iQktvR~~L~rkkhkPRi~ 69 (148)
T 3gn4_A 14 RVNHWLICSRWKKVQWCSLSVIKLKNKIKY--------RAEACIKMQKTIRMWLCKRRHKPRID 69 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 356777777777766655543222222211 23478889999999999988865433
No 37
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.82 E-value=2.5 Score=40.40 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001113 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 652 ~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
++++.+.....+......++..+..|+.+++.+
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555555555555555444
No 38
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.80 E-value=2.3 Score=39.24 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~ 675 (1154)
....|.+++..|....+.+...+.++|....+++........-+.+.+.++...-+...-|+.++.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666777777677666666666677777766666666666666555
No 39
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.62 E-value=3 Score=39.85 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001113 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~ 647 (1154)
+....|...+..|+..+.++..++++.+....++...+.
T Consensus 69 E~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kk 107 (129)
T 2fxo_A 69 ERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKR 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666665555555555544444433
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.48 E-value=0.28 Score=47.53 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001113 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
+..+.-+++..++.++..++++++++..+..+......+++.+.+++..+++++..|+.++.+|+.++..
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666666666666666666666666666667777777777777777777777776654
No 41
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.06 E-value=3.5 Score=40.29 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 613 ELTSENEKLKTLVSSLEKKIDE-TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~e-le~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
..+.++.+++.++++|-..+-+ ..+-...... .-...+.+...|++++.+-+..+..++.++..|+.
T Consensus 76 ~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~-------~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 76 KAEEEADKLNKEVEDLTASLFDEANNMVADARK-------EKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555665555555432 1112222111 12234455556666666666667777777776665
No 42
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=93.84 E-value=0.022 Score=38.60 Aligned_cols=20 Identities=45% Similarity=0.642 Sum_probs=15.9
Q ss_pred cchhhhhhHHHHHHHHHHHH
Q 001113 421 RREASCLRIQRDLRMYLAKK 440 (1154)
Q Consensus 421 r~~~AAi~IQ~~~R~~~~Rk 440 (1154)
+++.||++||+.||+|+.++
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999988764
No 43
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=93.67 E-value=0.13 Score=49.87 Aligned_cols=55 Identities=18% Similarity=0.391 Sum_probs=38.7
Q ss_pred HHhhhcccchhhhchhhhHHHHHHHHHhhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHh
Q 001113 383 RKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDM 445 (1154)
Q Consensus 383 ~~~R~~~~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~Rk~y~~~ 445 (1154)
+.+..|+.|.++.+...++..+=..=...+. |..|+++||+.+|||++|+.|..-
T Consensus 13 ~kV~~WLi~sRWrK~q~~~lsvIKLknKI~y--------R~~~~i~iQktvR~~L~rkkhkPR 67 (148)
T 3gn4_A 13 KRVNHWLICSRWKKVQWCSLSVIKLKNKIKY--------RAEACIKMQKTIRMWLCKRRHKPR 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4567788888888777666554433333222 336899999999999999998753
No 44
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=93.48 E-value=0.038 Score=38.62 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.4
Q ss_pred cchhhhhhHHHHHHHHHHHHH
Q 001113 421 RREASCLRIQRDLRMYLAKKA 441 (1154)
Q Consensus 421 r~~~AAi~IQ~~~R~~~~Rk~ 441 (1154)
+++.||++||+.||+|+.++.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999988765
No 45
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=92.99 E-value=1.3 Score=39.43 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001113 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
..+.+..+..+..+++..+...+....+++.+...+..++.++..++.+++..+..|.....+|+.++.++++.+
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667777788888888888888888888888888888888877788888888888888888888888887665
No 46
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.05 E-value=5.6 Score=38.85 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA--------LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l--------~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
..+..+|...+.+.+..-.+.+.....++.+.+++...+ .++......++..+..|+.++.+.+.-++.++.
T Consensus 57 ~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 57 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333344444444444444433332 222333344455555555555555555555544
Q ss_pred h
Q 001113 687 Q 687 (1154)
Q Consensus 687 q 687 (1154)
+
T Consensus 137 q 137 (154)
T 2ocy_A 137 Q 137 (154)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.02 E-value=4.4 Score=36.90 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001113 652 QALEAESKIVQLKTAMHRLEEKVSDME 678 (1154)
Q Consensus 652 ~l~~~e~~~~~l~~~~~~Le~~i~~Le 678 (1154)
.++..++.....+.++..|.-+|.-|+
T Consensus 73 kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 73 SLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333344444444444444443
No 48
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.10 E-value=3.4 Score=38.85 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=9.2
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 001113 667 MHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 667 ~~~Le~~i~~Le~e~~~l~ 685 (1154)
..+|+.+++.|++|+.-++
T Consensus 85 r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555554444
No 49
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.92 E-value=2.6 Score=37.24 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
++..+..++.++..+++.++..+++...+.++-..........+..+.+.++...-...+|+.+++.|++|+.-|++
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555666666666666666666666666555444445555555555555556666667788888888888877664
No 50
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=90.47 E-value=4.7 Score=37.18 Aligned_cols=30 Identities=13% Similarity=0.351 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001113 656 AESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 656 ~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.+..+..|...-++...++.+|+.||+.|.
T Consensus 75 vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 75 VQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 344555666677777777888888887775
No 51
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.47 E-value=6.4 Score=35.83 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001113 652 QALEAESKIVQLKTAMHRLEEKVSDM 677 (1154)
Q Consensus 652 ~l~~~e~~~~~l~~~~~~Le~~i~~L 677 (1154)
.++..++.....+.++..|.-+|.-+
T Consensus 73 kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 73 KLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444433
No 52
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=90.35 E-value=0.17 Score=34.33 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=16.1
Q ss_pred HhhhhHHHHHHHHHHHHHHH
Q 001113 469 RQTRASILIQSHCRKYLARL 488 (1154)
Q Consensus 469 ~~~~aa~~IQ~~~R~~~~r~ 488 (1154)
+++.+|++||+.||+|+.++
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999988764
No 53
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=90.28 E-value=0.25 Score=34.57 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=17.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 001113 469 RQTRASILIQSHCRKYLARLHY 490 (1154)
Q Consensus 469 ~~~~aa~~IQ~~~R~~~~r~~~ 490 (1154)
+++.+|++||+.||+|+.++..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999887653
No 54
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.95 E-value=3.3 Score=40.06 Aligned_cols=63 Identities=16% Similarity=0.260 Sum_probs=37.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 624 LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 624 ~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+..|+.++..++.++..++.+..+..+.++..+..+..|+-++..+++++..+++||..|=+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444455566666667777777788888888888866633
No 55
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.87 E-value=10 Score=35.53 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHH
Q 001113 640 EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME----TENQILRQ 686 (1154)
Q Consensus 640 ~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le----~e~~~l~q 686 (1154)
..++.....+.+.++++--....|+.+++.|.+++.=|+ +|+..++.
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443334455555566655555443 45555543
No 56
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=89.73 E-value=0.51 Score=57.13 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001113 565 LQSALQEMQLQFKESKEKL 583 (1154)
Q Consensus 565 L~~~l~~le~~l~~~~~~~ 583 (1154)
|+.++..++.+...++..+
T Consensus 340 ~~~~~~~~~~~~~~~~~~l 358 (575)
T 2i1j_A 340 YQDRLRQMQEEMERSQANL 358 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 57
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=89.69 E-value=0.83 Score=33.76 Aligned_cols=34 Identities=35% Similarity=0.562 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+.+++.+..+++..+.+|++++.-|+.||..|||
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4566777778889999999999999999999998
No 58
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.43 E-value=13 Score=34.25 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMH 668 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~ 668 (1154)
.+..|...+..+...+.+|+..++++|...........++..++..+-....-|+.++.
T Consensus 43 El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 43 DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666665555555555666666555555555555554
No 59
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.25 E-value=5.4 Score=34.74 Aligned_cols=63 Identities=8% Similarity=0.129 Sum_probs=29.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001113 623 TLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 623 ~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.+.+....++..++.++.+.+.........+..++.++..++.++...++++......+....
T Consensus 13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333343333333434444445555555556666666555555555554433
No 60
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=88.67 E-value=4.1 Score=45.39 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=81.4
Q ss_pred CCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHHHhHhhhcc-CCCCCCchhHHHhhchHHHHHHHhh-
Q 001113 942 DSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLR-RECCTFSNGEYVKAGLAELELWCCQ- 1019 (1154)
Q Consensus 942 ~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~- 1019 (1154)
+.++..+.+++.+|..++.. .-++|+.+..-++...|.+|+-.+.+-|+.. -+-.+-.--.++...|..+|+-+.+
T Consensus 215 ~~ps~yi~dli~fL~~~f~s--l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~~ 292 (325)
T 2a2f_X 215 GIASAFITDMISYLKSTFDS--FAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASE 292 (325)
T ss_dssp CSCCHHHHHHHHHHHHHHHT--TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHhC
Confidence 34556799999999999994 6799999999999999999999999977653 2566777778899999999999987
Q ss_pred --cccccccchHHHhHHHHHHHhHHhhc
Q 001113 1020 --AKEEYAGSSWDELKHIRQAVGFLVIH 1045 (1154)
Q Consensus 1020 --~~~~~~~~~~~~L~~l~Qa~~lLq~~ 1045 (1154)
.| .-.+.....|..|+|.++||+..
T Consensus 293 ~v~~-l~~~~L~~~F~eLrQli~Ll~~~ 319 (325)
T 2a2f_X 293 PVPG-LKEGELSKYFLRNRQLLDLLILE 319 (325)
T ss_dssp SSSS-CCSSTTGGGGHHHHHHHHHHHCC
T ss_pred CCCC-cccchHHHHHHHHHHHHHHHHhh
Confidence 33 23356678999999999999864
No 61
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.22 E-value=15 Score=33.40 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001113 653 ALEAESKIVQLKTAMHRLE 671 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le 671 (1154)
..+++..+..|.+.+.-|+
T Consensus 81 ~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 81 AAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3344555555555555544
No 62
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.19 E-value=4 Score=39.43 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQL 663 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l 663 (1154)
.|..++..++.++.+++.++..+..+++++.++..++..++..++.++.+|
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444443333333333333333
No 63
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.01 E-value=14 Score=33.76 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 660 IVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+.+|+.+++.|..++.+...|++.|+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444
No 64
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.96 E-value=11 Score=32.68 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 671 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le 671 (1154)
+.|..+.......++.++..+.+.++.....+.+...+.+++..++..+...+..+....
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444333333
No 65
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.34 E-value=14 Score=32.00 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001113 610 VVEELTSENEKLKTLVSSLEKKIDETEK 637 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1154)
+++.+-..+..|+.++++|+.+...+..
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333333
No 66
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.65 E-value=22 Score=31.76 Aligned_cols=17 Identities=6% Similarity=0.307 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001113 563 AKLQSALQEMQLQFKES 579 (1154)
Q Consensus 563 ~~L~~~l~~le~~l~~~ 579 (1154)
+.++.++..++.++..+
T Consensus 8 e~lre~l~~le~~~~~~ 24 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDR 24 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444455554444443
No 67
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.42 E-value=25 Score=31.50 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001113 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA-LEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l-~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
.+..+|...+.+.+..-.+.+.....++.+.+++...| +++..-+..-..+-..++.++..|+.++
T Consensus 26 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 26 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444433332 2223333333333334444444444443
No 68
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.24 E-value=41 Score=38.90 Aligned_cols=15 Identities=7% Similarity=0.199 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001113 565 LQSALQEMQLQFKES 579 (1154)
Q Consensus 565 L~~~l~~le~~l~~~ 579 (1154)
+...|++|+.+++++
T Consensus 62 ltkrINELKnqLEdl 76 (562)
T 3ghg_A 62 FTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 69
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.72 E-value=8.8 Score=44.30 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001113 560 QENAKLQSALQEMQLQ 575 (1154)
Q Consensus 560 ~e~~~L~~~l~~le~~ 575 (1154)
..+++|+.++++++..
T Consensus 64 krINELKnqLEdlsKn 79 (562)
T 3ghg_A 64 NRINKLKNSLFEYQKN 79 (562)
T ss_dssp HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555666666666433
No 70
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=82.49 E-value=5.9 Score=38.66 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~ 672 (1154)
.+++..|+.+....+...++...+.++...++.-++..+.....+++.++.++..|+.++..+-+
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~ 115 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTN 115 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444444444444444444444444443333333333333333333333333333
No 71
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.28 E-value=29 Score=31.45 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001113 653 ALEAESKIVQLKTAMHRLE 671 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le 671 (1154)
..+++..+..|.+.+.-++
T Consensus 81 ~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 81 ATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3344444555555554443
No 72
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=81.73 E-value=15 Score=33.06 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i 674 (1154)
+..|..++..|-=+++-|+..++++++...++.++..+..+.++........++.++..+++.+
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666677777777777777777776666655555554444445555555444433
No 73
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=81.19 E-value=0.33 Score=62.48 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=8.2
Q ss_pred hhHHHhhhhhHHH
Q 001113 85 FEQFCINLTNEKL 97 (1154)
Q Consensus 85 feqlciNyanEkL 97 (1154)
|-|||-....|-.
T Consensus 259 FYqll~g~~~~~~ 271 (995)
T 2ycu_A 259 FYQLLGGAGEQLK 271 (995)
T ss_dssp HHHHHHHCCHHHH
T ss_pred HHHHHcCCCHHHH
Confidence 7788876654433
No 74
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.06 E-value=16 Score=30.95 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001113 655 EAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 655 ~~e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
.+...+..++....+++.++.++++|+.
T Consensus 48 ~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 48 VLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555555556666655543
No 75
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.48 E-value=3.8 Score=39.04 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001113 615 TSENEKLKTLVSSLEKK 631 (1154)
Q Consensus 615 ~~e~~kLe~~l~~l~~~ 631 (1154)
+.++.+++.++++|-..
T Consensus 66 E~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 66 EEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 76
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=79.97 E-value=13 Score=31.97 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 659 ~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
++...+....+|..++..+++++..|+.
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444444444555555555555543
No 77
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=79.78 E-value=8.4 Score=34.74 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001113 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1154)
+.+..|.++++.|+.+.+.|+++++.+|.++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444433
No 78
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=79.75 E-value=27 Score=32.17 Aligned_cols=19 Identities=11% Similarity=0.221 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 001113 538 EELTWRLQLEKRMRVDMEE 556 (1154)
Q Consensus 538 ~el~~~l~~e~~~~~~le~ 556 (1154)
..++..|+.+...+.+++.
T Consensus 16 ~ql~~qL~k~~~~r~~Le~ 34 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELED 34 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 79
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.50 E-value=24 Score=34.20 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEK 673 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~ 673 (1154)
.+..|+.+...++..+.+++..+.+-.+.++.+..+...+.-++..++.++..++++...|=++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555544443
No 80
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=79.19 E-value=29 Score=30.69 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001113 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
-..++..++..+..++..+...+....+++.....+.....++..++...+....+|...-..|+..++
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444444444444444444433333333333333333333333333333
No 81
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=78.84 E-value=9 Score=33.00 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001113 609 AVVEELTSENEKLKTLVSSLEKKIDETE 636 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1154)
.+++.++..+..|+..+..++..+++-.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554444433
No 82
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=78.38 E-value=2.5 Score=54.47 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=34.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHH
Q 001113 423 EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNE 464 (1154)
Q Consensus 423 ~~AAi~IQ~~~R~~~~Rk~y~~~r~a~i~iQs~~Rg~~aR~~ 464 (1154)
..+|+.||+ +|+|.+|++|++++.+++.+|..+|+...|+.
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777775 79999999999999999999999888766544
No 83
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.13 E-value=27 Score=31.13 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
-+++..|+.++..|+.++..+...-. . ....--...+.+++.++..+..+...++.++..+..+...++.
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~~~------~---~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQGK------S---RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC------C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666655543210 1 1111223445666667777777777777777777777777665
No 84
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=78.12 E-value=12 Score=36.57 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001113 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 621 Le~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
-...++.|+..+.+......+......+...++..++..+...+......+.++..|++++...
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~ 113 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTV 113 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544444444555555555555555555555555555555555555555443
No 85
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=77.95 E-value=48 Score=33.31 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccC
Q 001113 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLST 692 (1154)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~~~~~ 692 (1154)
+....+.++..++.++.+-|.++...+.....+..++...+.++..|+.++..++.++...+..+..++-.-++.+
T Consensus 78 iL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS~s 153 (242)
T 3c9i_A 78 ELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKT 153 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCBSS
T ss_pred eeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhhhh
Confidence 3455566777777777777778887778888888888899999999999999999999999999999998766654
No 86
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=77.70 E-value=12 Score=29.80 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 658 SKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+-...+..++..|+.++..|+.||..||.
T Consensus 34 kVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 34 KVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 33445666677777777777777777764
No 87
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=77.48 E-value=24 Score=30.21 Aligned_cols=59 Identities=8% Similarity=0.185 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001113 619 EKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1154)
Q Consensus 619 ~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~L 677 (1154)
.++++.+.....+++.+.....++.....++...+..++.....+++.+.-|+.+.++|
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555444444444444444444444444443333
No 88
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=77.39 E-value=28 Score=29.45 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001113 609 AVVEELTSENEKLKTLVSSLEKKIDETE 636 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1154)
.+++.++.++..|+..+..++..+++-.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444433
No 89
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=77.21 E-value=41 Score=30.19 Aligned_cols=36 Identities=3% Similarity=0.135 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001113 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~ 647 (1154)
..|+++...+..++..++.+...++..-...-++..
T Consensus 28 ~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn 63 (96)
T 3q8t_A 28 EDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYS 63 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344455555555555555544444443333333333
No 90
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.12 E-value=29 Score=32.96 Aligned_cols=68 Identities=13% Similarity=0.311 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001113 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e 680 (1154)
.+.++...+..|+.+++.++.....++..+.+++.... ..+.+.+..+..++.++..++..+...-.|
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAKQDMARLLRE 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555443322 223344444444555554444444443333
No 91
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=76.09 E-value=17 Score=29.70 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001113 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
..+.+++.++..++.+...|..++..|+.|+..|++..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777888888888899999999999998888753
No 92
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=75.79 E-value=21 Score=31.32 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001113 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1154)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~L 677 (1154)
..+..+...++..+++++.+.++.-.....++.....+.+.+.++--....|+.+++.|.++|.=|
T Consensus 17 ~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 17 ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677777776666666667777777777777776666667777777777777644
No 93
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=75.75 E-value=25 Score=42.90 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=79.7
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHHHhHhhhccCCCCCCchhHHHhhchHHHHHHHhhccccc
Q 001113 945 SSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEY 1024 (1154)
Q Consensus 945 ~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~ 1024 (1154)
++.....+..|...+..|...-+++.+...++.++..=|+..+|+.++++ +-.|-.-|.|+.+=+..|-.=+ + .+
T Consensus 562 SaEL~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~-nkFS~~Ga~Qf~~D~~~L~~v~---~-lp 636 (706)
T 3fhn_A 562 SAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILKL-NKFNQNGLNQFLHDFKSLSSIL---S-LP 636 (706)
T ss_dssp CGGGHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTTT-SCBCHHHHHHHHHHHHHHHTTS---C-CC
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CccCHHHHHHHHHHHHHHHHHh---c-CC
Confidence 45678999999999999999999999999999999999999999999994 5567777888888777653222 2 34
Q ss_pred ccchHHHhHHHHHHHhHHhhcc
Q 001113 1025 AGSSWDELKHIRQAVGFLVIHQ 1046 (1154)
Q Consensus 1025 ~~~~~~~L~~l~Qa~~lLq~~k 1046 (1154)
.+.+-..+..|.+++.||-++.
T Consensus 637 ~~~~~~~~~~L~E~l~LL~L~~ 658 (706)
T 3fhn_A 637 SHATNYKCMSLHELVKILKLKY 658 (706)
T ss_dssp TTCCCHHHHHHHHHHHHHGGGG
T ss_pred CcchhhHHHHHHHHHHHcCCCC
Confidence 4444468999999999999974
No 94
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=75.67 E-value=8.1 Score=46.58 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001113 530 KNKLEKQVEELTWRLQ 545 (1154)
Q Consensus 530 ~~~LE~kv~el~~~l~ 545 (1154)
+...|++..+|+.+|.
T Consensus 330 ~~~~~~~~~~~~~~~~ 345 (575)
T 2i1j_A 330 RERAEKKQQEYQDRLR 345 (575)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3444444444444443
No 95
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=75.64 E-value=31 Score=31.30 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 656 ~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
++.....++..++.|+.++..++.++..++.
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666665554
No 96
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=75.22 E-value=26 Score=29.99 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001113 637 KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 637 ~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e 680 (1154)
-+..+++.++..-..++......+..++..+..-+.++..|+++
T Consensus 33 ~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 33 IKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333333333334443334444444444444444444443
No 97
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=74.96 E-value=1.3 Score=55.33 Aligned_cols=27 Identities=37% Similarity=0.671 Sum_probs=20.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhH
Q 001113 423 EASCLRIQRDLRMYLAKKAYKDMCFSA 449 (1154)
Q Consensus 423 ~~AAi~IQ~~~R~~~~Rk~y~~~r~a~ 449 (1154)
..+|+.||++||||++|++|.++|.++
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357888888888888888888877654
No 98
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.78 E-value=30 Score=29.77 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.+...+.+.+.+++.+..+++.+ ...+...+++.+.+-..++.+++.+-+.+.-.=.|+..+++.
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~-------v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqg 70 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQ-------LRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREG 70 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33334444444444444444433 333444444555455555566665555555555555666653
No 99
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=74.64 E-value=48 Score=29.73 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001113 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKI 645 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~ 645 (1154)
|..+-..|-.++.++++.-..+...+..++.+
T Consensus 16 l~~eE~~L~~eL~~lEke~~~l~~el~~le~E 47 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKVVAENLEKVQAE 47 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333334444444444444444333333333
No 100
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=73.92 E-value=31 Score=29.10 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 632 l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+.+++.+..+++.....+...+++.+.+-..++.+++.+-+.+.-.=.|+..+++.
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~ 64 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDN 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344444444444444444555555555556666666555555555556666654
No 101
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=73.47 E-value=37 Score=30.28 Aligned_cols=12 Identities=25% Similarity=0.055 Sum_probs=4.4
Q ss_pred HHHHHHHhHHHH
Q 001113 625 VSSLEKKIDETE 636 (1154)
Q Consensus 625 l~~l~~~l~ele 636 (1154)
+..|+..+..++
T Consensus 25 VR~LEqqN~~Le 36 (93)
T 3s4r_A 25 VRFLEQQNKILL 36 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 102
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=73.08 E-value=30 Score=31.75 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 655 ~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
..+..+..++.++..+++++..++.++..++.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555544
No 103
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.07 E-value=9.9 Score=32.03 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001113 656 AESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 656 ~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.+..+..++.++.+.++.|.+|+.+++.++
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455566666666666666666666554
No 104
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=73.06 E-value=37 Score=31.28 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+.....++..++.|+.++..++.++..++.
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555544444
No 105
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.01 E-value=32 Score=32.74 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001113 533 LEKQVEELTWRLQLEKRMR 551 (1154)
Q Consensus 533 LE~kv~el~~~l~~e~~~~ 551 (1154)
.+.++..|...+..|+..|
T Consensus 44 ~~~e~~~L~~~l~eE~~~R 62 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELR 62 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344444444454444333
No 106
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=72.93 E-value=1.2e+02 Score=34.96 Aligned_cols=20 Identities=5% Similarity=0.145 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001113 566 QSALQEMQLQFKESKEKLMK 585 (1154)
Q Consensus 566 ~~~l~~le~~l~~~~~~~~~ 585 (1154)
++-+..+++++++++..+..
T Consensus 348 ~~~~~~~~~~~~~~n~~~~~ 367 (551)
T 2b5u_A 348 VQVYNSRKSELDAANKTLAD 367 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhhhhHHHH
Confidence 34456666666666655543
No 107
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=72.64 E-value=8 Score=33.38 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=6.5
Q ss_pred HhHHHHHHHHHHHHHHH
Q 001113 631 KIDETEKKFEETSKISE 647 (1154)
Q Consensus 631 ~l~ele~~~~e~~~~~~ 647 (1154)
++.++|.+++-.+...+
T Consensus 15 Ri~~LE~klAfqE~tIe 31 (78)
T 3efg_A 15 RLVELETRLSFQEQALT 31 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344443333333333
No 108
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=72.54 E-value=51 Score=30.30 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 648 ~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+..+.+..+..+..+++++..++.++.+++..+...-+
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344445555666667777777777777777777765543
No 109
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=72.43 E-value=59 Score=37.85 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001113 659 KIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 659 ~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
++.+++.++..|+.++++++.+.+.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444433
No 110
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.03 E-value=31 Score=32.77 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001113 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~L 677 (1154)
++...+..|+.+++.++.....++..+.+++.... ..+.+.+..+..++.++..++..+...
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC---MQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444333221 122333444444444444444444443
No 111
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=69.99 E-value=60 Score=36.07 Aligned_cols=17 Identities=6% Similarity=0.169 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001113 564 KLQSALQEMQLQFKESK 580 (1154)
Q Consensus 564 ~L~~~l~~le~~l~~~~ 580 (1154)
.++.++++|...+....
T Consensus 64 ~~~~rIe~L~~~L~~~s 80 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQ 80 (390)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44445555555544443
No 112
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=69.25 E-value=1.2e+02 Score=35.12 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
...+..|+..++.+..+|.+|+..+..+..
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777765544
No 113
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=68.88 E-value=45 Score=29.57 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 001113 665 TAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 665 ~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
..+.+|+.++..|..||+.|+++
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555553
No 114
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=68.45 E-value=53 Score=28.21 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001113 640 EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 640 ~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e 680 (1154)
..+........+++.+++.+...|..+++.+++++.+|+.+
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33444444445556666666666666777777777666544
No 115
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=67.34 E-value=43 Score=27.73 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 001113 667 MHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 667 ~~~Le~~i~~Le~e~~~l~q 686 (1154)
.++|.+++-.+.-|+..|++
T Consensus 48 ~ErLNDEiislNIENNlL~~ 67 (75)
T 3a7o_A 48 TERLNDELISGTIENNVLQQ 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhHHHHHHHHH
Confidence 34444555555555555544
No 116
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=67.22 E-value=71 Score=30.15 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 649 ~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+..+++.++..+..+++.+..+++++..+++++..+.++
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455556666667777777777777777777666554
No 117
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=67.09 E-value=71 Score=28.79 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001113 654 LEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 654 ~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
+..+..+..+++++..++.++.+++..+
T Consensus 75 e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 75 ETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555554443
No 118
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.12 E-value=43 Score=30.15 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001113 660 IVQLKTAMHRLEEKVSD 676 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~ 676 (1154)
+..|+.++++|++.+..
T Consensus 77 ~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 77 HSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 119
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=65.23 E-value=31 Score=29.70 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 652 ~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
...+.+..+..|+.+...|+.+|..|+.|+..|++-
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777888999999999999999999999864
No 120
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=64.50 E-value=1.1e+02 Score=35.33 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001113 564 KLQSALQEMQLQFKESKE 581 (1154)
Q Consensus 564 ~L~~~l~~le~~l~~~~~ 581 (1154)
.|++++.+.+..+..+++
T Consensus 401 ~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 344444444444444433
No 121
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=63.78 E-value=90 Score=28.62 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+++.+++.++..|..++.+..+++++|+.+++.+...
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 3466777777788888888888888888888877653
No 122
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=63.73 E-value=44 Score=27.38 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
..+.+++.++..|+.+...|..+|..|+.++..|+.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777788888888888888777765
No 123
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=63.16 E-value=32 Score=28.28 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 652 ~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
...+++.++..|+.+..+|+.++..|+.|+..|++
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777778888888888888888877765
No 124
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=62.75 E-value=4 Score=40.63 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=19.6
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHH
Q 001113 421 RREASCLRIQRDLRMYLAKKAYKD 444 (1154)
Q Consensus 421 r~~~AAi~IQ~~~R~~~~Rk~y~~ 444 (1154)
++..||++||++||.|+.|+.+.+
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 456799999999999988877654
No 125
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.34 E-value=33 Score=32.56 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001113 614 LTSENEKLKTLVSSLEKKIDETEKKF 639 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1154)
...++..+...+..|+.+++.+....
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~ 59 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQC 59 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444444444443333
No 126
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=61.83 E-value=95 Score=28.27 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhh
Q 001113 667 MHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 667 ~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
-+++.++.+.|+.++..|+.++
T Consensus 85 REkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3456677777777777777654
No 127
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.73 E-value=71 Score=27.39 Aligned_cols=43 Identities=28% Similarity=0.223 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE 655 (1154)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~ 655 (1154)
.|-.|+..|+-.+++++.+-.+-|+++...+.+...+..+++.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4555555555555555555555555555544444444444433
No 128
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.65 E-value=21 Score=30.06 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001113 660 IVQLKTAMHRLEEKVS 675 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~ 675 (1154)
+.+.+.++.+|+.++.
T Consensus 49 L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 49 LDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334443333
No 129
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=61.00 E-value=41 Score=29.57 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 001113 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLL 690 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~~~ 690 (1154)
..+.+..+..|+.+...|+.+|..|+.|+..|+.-...
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788899999999999999999998875433
No 130
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=60.62 E-value=84 Score=28.61 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001113 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
.++...+..+..+..++..++.++..++.++.
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555544
No 131
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=59.47 E-value=2.2e+02 Score=32.44 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001113 658 SKIVQLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
..+..|+..++.+..+|++||..+..
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555544
No 132
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=59.44 E-value=2.3e+02 Score=32.67 Aligned_cols=30 Identities=7% Similarity=0.226 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
++...+.+.+++.-+....+.+.++..++.
T Consensus 79 ~~~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 79 QKDLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555666666666666666665544
No 133
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=59.37 E-value=57 Score=28.90 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 656 ~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
...++..|+.++.+|..+...|..|++.-+++
T Consensus 63 ~~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 63 LDARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35667778888888888889999999888875
No 134
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=58.72 E-value=52 Score=28.63 Aligned_cols=33 Identities=3% Similarity=0.158 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 654 ~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.++..++..++.++.+|+..++.+.-+++.+++
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555556666666666666666666665544
No 135
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=58.56 E-value=1.5e+02 Score=33.70 Aligned_cols=123 Identities=13% Similarity=0.040 Sum_probs=93.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHHHhHhhhccCCCCC---CchhHHHhhchHHHHHHHhhcccc
Q 001113 947 HWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCT---FSNGEYVKAGLAELELWCCQAKEE 1023 (1154)
Q Consensus 947 ~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs---~s~G~qIr~nls~Le~W~~~~~~~ 1023 (1154)
.++.|+..+..++.-++ .+++|.+...++..+...+-..-++.|+. +.-|. -.-|.+|+-.+..|.+-+.+.+.
T Consensus 219 ~v~~i~~ti~dy~~d~~-~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~- 295 (399)
T 2fji_1 219 QAQQIADTLDEYLLDIK-PQMNSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLD- 295 (399)
T ss_dssp HHHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 68899999999988775 56999999999999999999999999997 55555 45688999999999999887552
Q ss_pred cccc----hHHHhHHHHHHHhHHhhcccccCCHH-HHHhccCcCCCHHHHHHHHh
Q 001113 1024 YAGS----SWDELKHIRQAVGFLVIHQKYRISYD-EITNDLCPILSVQQLYRICT 1073 (1154)
Q Consensus 1024 ~~~~----~~~~L~~l~Qa~~lLq~~kk~~~~~~-~i~~~~c~~Ls~~Ql~kil~ 1073 (1154)
..+. +...+..|.+.+. |-+++-+..-.. .......|-+++..+.+||.
T Consensus 296 ~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~ 349 (399)
T 2fji_1 296 GNESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILK 349 (399)
T ss_dssp TCTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 1121 4577888888888 876420222111 22256799999999999995
No 136
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=58.09 E-value=27 Score=28.55 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
..+.+++.++..|+.+...|..++..|+.|+..|++.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777778888888888888888887776653
No 137
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=57.95 E-value=99 Score=27.24 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 001113 663 LKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 663 l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.++.+++|+.+|..|..+++...
T Consensus 65 qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 65 QQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777666665554
No 138
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.25 E-value=1.1e+02 Score=28.64 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.+..|..++..|+.+++.+.. +.......+..++..++..+..-.........+.+.|+.+++.++..
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~----------E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKT----------ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666555555544432 22333333444444444444444444455555566666666666553
No 139
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=56.44 E-value=8.2 Score=40.69 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 647 ~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.++..++..+..+...|..++++++.++..|++|++.|++
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555666666777888888899999999999999887
No 140
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=56.26 E-value=1.6e+02 Score=28.97 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhH
Q 001113 663 LKTAMHRLEEKVSDM 677 (1154)
Q Consensus 663 l~~~~~~Le~~i~~L 677 (1154)
++.+...+.+..+++
T Consensus 132 wqaE~kre~E~qEEl 146 (169)
T 3k29_A 132 WMKEALKEEARQEEK 146 (169)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 141
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.25 E-value=1.4e+02 Score=28.28 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001113 610 VVEELTSENEKLKTLVSSLEKKIDETEKK 638 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~ 638 (1154)
.++.|+.++..++.....|+..+.+++..
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34445555555555555555555544443
No 142
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=55.77 E-value=1.1e+02 Score=27.43 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001113 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1154)
+.+++|++|+...+.++...++++.+.++..
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777766665544
No 143
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=54.52 E-value=26 Score=29.52 Aligned_cols=27 Identities=26% Similarity=0.275 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001113 658 SKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
.....+..++..|...+..|..|+..+
T Consensus 43 ~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 43 ELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333345555666666666666666543
No 144
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=54.31 E-value=48 Score=24.46 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=5.4
Q ss_pred HHHHHHHHHhHHHH
Q 001113 667 MHRLEEKVSDMETE 680 (1154)
Q Consensus 667 ~~~Le~~i~~Le~e 680 (1154)
+..|+++|..|+.|
T Consensus 33 ianlrdeiarlene 46 (52)
T 3he5_B 33 IANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 145
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=53.60 E-value=3.1e+02 Score=31.66 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 663 l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
....+..|+..+..+...+..|+.
T Consensus 166 ~~~~i~~L~~~~~~l~~ki~~l~~ 189 (464)
T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKLEN 189 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444
No 146
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=52.65 E-value=1.7e+02 Score=33.34 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 659 ~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+..|+..+..++.+|..|+..+..|..
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344444455555555566555555544
No 147
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=52.09 E-value=1.1e+02 Score=26.46 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 523 TGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKL 583 (1154)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~~ 583 (1154)
+..++..+..||+.+.+++.+... +...++..+..++.++..+..++
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~--------------~~~~~q~~i~~lE~eL~~~r~e~ 49 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAV--------------EAANYQDTIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777788888777666552 22334444555555555544443
No 148
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=51.00 E-value=2.5e+02 Score=31.89 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=5.7
Q ss_pred chhhHHHh
Q 001113 814 HMAYWLSN 821 (1154)
Q Consensus 814 ~l~fWLSN 821 (1154)
..-|||.|
T Consensus 223 ~gEfWLGl 230 (409)
T 1m1j_C 223 TTEFWLGN 230 (409)
T ss_dssp CCCEECCH
T ss_pred CccEEeec
Confidence 46788776
No 149
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=49.92 E-value=14 Score=36.67 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=18.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHh
Q 001113 469 RQTRASILIQSHCRKYLARLHYMK 492 (1154)
Q Consensus 469 ~~~~aa~~IQ~~~R~~~~r~~~~~ 492 (1154)
++..||..||++||.|+.|+.++.
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 456688999999999888766643
No 150
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=49.38 E-value=3.4e+02 Score=31.33 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001113 658 SKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
+.+...++++.+-+.++..-+.++...
T Consensus 73 ~dlakY~~~~AeY~~kl~aYe~~~~~~ 99 (497)
T 3iox_A 73 ADLAKYQKDLADYPVKLKAYEDEQTSI 99 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555544444433
No 151
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=49.06 E-value=1.4e+02 Score=28.76 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHH
Q 001113 893 QQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLV 972 (1154)
Q Consensus 893 q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~ 972 (1154)
+.....+.+||..++.-+..++...+.. .... .+.+++.++.|.+.+..++.+|.. .+|+.-+
T Consensus 15 rdy~eH~~eI~~KLv~Im~~r~~~~l~~------Wd~k----------~pvpS~~m~tl~Ke~~kLH~~Ls~-~LP~~~v 77 (141)
T 3n1e_A 15 KDYHDHIAEISAKLVAIMDSLFDKLLSK------YEVK----------APVPSPCFRNICKQMTKMHEAIFD-LLPEEQT 77 (141)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTT------CCCC----------SSSSCHHHHHHHHHHHHHHHHHTT-TSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccC----------CCCCCHHHHHHHHHHHHHHHHHHh-hCCHHHH
Confidence 3345668999999988888888766531 1110 023457899999999999999965 6899999
Q ss_pred HHHHHHHHHhhhHH
Q 001113 973 QKIFTQTFSYINVQ 986 (1154)
Q Consensus 973 ~Q~f~Qlf~~ina~ 986 (1154)
..+|..+|.-.+-.
T Consensus 78 ~~Im~~Vf~~fk~~ 91 (141)
T 3n1e_A 78 QMLFLRINASYKLH 91 (141)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998765544
No 152
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=48.33 E-value=96 Score=24.82 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 001113 657 ESKIVQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e 680 (1154)
...+.++.+++....+.|..++.+
T Consensus 32 k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 32 KEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 153
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=48.31 E-value=46 Score=28.60 Aligned_cols=12 Identities=8% Similarity=-0.191 Sum_probs=4.5
Q ss_pred HHHhHHHHHHHH
Q 001113 673 KVSDMETENQIL 684 (1154)
Q Consensus 673 ~i~~Le~e~~~l 684 (1154)
.|..|+.++..|
T Consensus 43 ~Id~L~~ql~~L 54 (78)
T 3efg_A 43 TGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 154
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.79 E-value=21 Score=40.98 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 001113 948 WQSIIDSLNTLLSTL 962 (1154)
Q Consensus 948 ~~~il~~L~~~~~~l 962 (1154)
++.-|..|..+...|
T Consensus 311 INkSL~aLg~vI~aL 325 (412)
T 3u06_A 311 INRSLSELTNVILAL 325 (412)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 344455555555444
No 155
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=47.35 E-value=1.7e+02 Score=26.72 Aligned_cols=11 Identities=18% Similarity=0.441 Sum_probs=4.1
Q ss_pred HHHHHHhHHHH
Q 001113 670 LEEKVSDMETE 680 (1154)
Q Consensus 670 Le~~i~~Le~e 680 (1154)
+...+..++.+
T Consensus 87 l~~~~~~l~~E 97 (107)
T 2no2_A 87 WAAEFAELEKE 97 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 156
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.31 E-value=24 Score=40.45 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 001113 949 QSIIDSLNTLLSTL 962 (1154)
Q Consensus 949 ~~il~~L~~~~~~l 962 (1154)
+.-|..|..+...|
T Consensus 324 NkSL~aLg~vI~aL 337 (403)
T 4etp_A 324 NKSLSALGDVIHAL 337 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 157
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=46.77 E-value=1.6e+02 Score=26.43 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 523 TGALQAAKNKLEKQVEELTWRLQLEKR--------MRVDMEEAKTQENAKLQSALQEMQLQFKESK 580 (1154)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~~l~~e~~--------~~~~le~~~~~e~~~L~~~l~~le~~l~~~~ 580 (1154)
++.|++.....|.++...+++|.++++ .+..--.++..++..++..+.+++.++....
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677777777777765542 2333333555666677777777776666543
No 158
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=46.61 E-value=47 Score=38.87 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001113 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
.+++..|..+...+..++++|+.+..++.+++..+.+..+ ...++..+...+.++++.|++++.++++++..+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~----~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKE----DAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666777777666666666555544432211 122334445566666666666666666666543
No 159
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=46.55 E-value=1.9e+02 Score=27.01 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 001113 564 KLQSALQEMQ 573 (1154)
Q Consensus 564 ~L~~~l~~le 573 (1154)
.|+.++..|+
T Consensus 44 ql~~~i~~Le 53 (120)
T 3i00_A 44 QLKGHVSELE 53 (120)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 160
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=46.54 E-value=71 Score=37.57 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001113 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE----RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~----~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
+++-+|..+...+..++++++.+..++.+++.++.+.... ......++..+...+.++++.+++++.++++++..+
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666655555543322100 001122333444556666666666666666665543
No 161
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=46.14 E-value=72 Score=27.56 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
|.++-....+|...+..+++++..++++|+.|+.
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445566666666666666666666654
No 162
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=45.87 E-value=1.1e+02 Score=24.40 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001113 652 QALEAESKIVQLKTAMHRLEEKV 674 (1154)
Q Consensus 652 ~l~~~e~~~~~l~~~~~~Le~~i 674 (1154)
.+....+.+.....++..++.++
T Consensus 34 ~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 34 KINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444433
No 163
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=45.72 E-value=1.5e+02 Score=25.71 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001113 657 ESKIVQLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
+..+.+-++...-|+-++.+...|...
T Consensus 73 E~RLsKtEKDkAiLELkLaE~~Dek~r 99 (101)
T 1d7m_A 73 EARLAKTEKDRAILELKLAEAIDEKSK 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHhhhhhhh
Confidence 344444444444444455554444443
No 164
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=43.90 E-value=68 Score=27.69 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 655 ~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
++-....+|.+.+..++++|..|+++|..|+.
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555666666666666666666554
No 165
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=42.58 E-value=97 Score=24.30 Aligned_cols=19 Identities=5% Similarity=0.179 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 001113 664 KTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 664 ~~~~~~Le~~i~~Le~e~~ 682 (1154)
...+.+.+++|..|+++++
T Consensus 29 ~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 29 METLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443
No 166
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=41.53 E-value=50 Score=38.41 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001113 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
+++-.|..+...+..++++++.+..++.+++..+.+..+ ...++..+...+.++++.+++++.++++++..+-
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE----PVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666555555544322111 1123334445566666666666666666665443
No 167
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=40.42 E-value=1.7e+02 Score=26.19 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001113 657 ESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
+.++.+...++..|+.++.+++.-+..+.
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555555444
No 168
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=39.66 E-value=1.2e+02 Score=26.61 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 001113 619 EKLKTLVSSLEKKIDETE 636 (1154)
Q Consensus 619 ~kLe~~l~~l~~~l~ele 636 (1154)
..|...++.|+.++.+++
T Consensus 25 e~le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 169
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=39.63 E-value=2.1e+02 Score=25.73 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKT 665 (1154)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~ 665 (1154)
++..|+..++++++.+.++.++..+..++.+.+......+...+..++.
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333333333333333333333333333333
No 170
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=39.02 E-value=1.9e+02 Score=27.78 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 649 ~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+..+++.++..+..+++.+..+++++..++..+..+.++
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666777777777777777777777776653
No 171
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=38.72 E-value=1.2e+02 Score=35.27 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001113 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS 643 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~ 643 (1154)
.+++-+|..+..++..++++++.+..++.+++..+.
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~ 71 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKK 71 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666666655555443
No 172
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=38.01 E-value=36 Score=26.32 Aligned_cols=9 Identities=44% Similarity=0.693 Sum_probs=3.4
Q ss_pred HHHHhHHHH
Q 001113 672 EKVSDMETE 680 (1154)
Q Consensus 672 ~~i~~Le~e 680 (1154)
+++..|++|
T Consensus 55 eevkkleee 63 (67)
T 1lq7_A 55 EEVKKLEEE 63 (67)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 173
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=37.96 E-value=86 Score=30.00 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 661 ~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
..++..+..++..+..|+.++..|..
T Consensus 83 k~~ea~la~l~~~~~~LeAE~aKLeE 108 (146)
T 2xnx_M 83 GNAKLELDQLSSEKEQLTIEKAKLEE 108 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444445555555555443
No 174
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=37.81 E-value=4.7e+02 Score=31.28 Aligned_cols=11 Identities=36% Similarity=0.223 Sum_probs=5.2
Q ss_pred Eeccchhhhcc
Q 001113 195 YQTELFLDKNK 205 (1154)
Q Consensus 195 Y~~~~fl~kN~ 205 (1154)
.|+.|+.+..+
T Consensus 96 iDTpGi~~~~~ 106 (592)
T 1f5n_A 96 LDTEGLGDVEK 106 (592)
T ss_dssp EEECCBCCGGG
T ss_pred ecCCCcCcccc
Confidence 45555554433
No 175
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.52 E-value=4.7e+02 Score=29.10 Aligned_cols=15 Identities=13% Similarity=0.218 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001113 531 NKLEKQVEELTWRLQ 545 (1154)
Q Consensus 531 ~~LE~kv~el~~~l~ 545 (1154)
..++.+|++|+.+|.
T Consensus 63 r~~~~rIe~L~~~L~ 77 (390)
T 1deq_A 63 QDFTSRINKLRDSLF 77 (390)
T ss_pred hhHHHHHHHHHHHHH
Confidence 334445555554444
No 176
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.90 E-value=71 Score=36.47 Aligned_cols=9 Identities=44% Similarity=0.482 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 001113 677 METENQILR 685 (1154)
Q Consensus 677 Le~e~~~l~ 685 (1154)
|..++..++
T Consensus 50 l~n~~~elk 58 (403)
T 4etp_A 50 LHNELQELR 58 (403)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 333444444
No 177
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.84 E-value=96 Score=31.07 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001113 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFE 640 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~ 640 (1154)
.++.|..|+..|.++++....+++.++++++
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~ 51 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQID 51 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544444444443333
No 178
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.60 E-value=31 Score=22.33 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 001113 662 QLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.+.....+|+.++..|+-|+..|+
T Consensus 4 rlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhc
Confidence 344455555555666655555443
No 179
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.35 E-value=1.7e+02 Score=23.49 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001113 652 QALEAESKIVQLKTAMHRLEEKVSDMET 679 (1154)
Q Consensus 652 ~l~~~e~~~~~l~~~~~~Le~~i~~Le~ 679 (1154)
++..++.....|..++..|++++..|+.
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555544443
No 180
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=35.02 E-value=5e+02 Score=29.43 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.|+..+.....+|.+|++.+..|..
T Consensus 109 ~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 109 YLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555566666655554
No 181
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=34.76 E-value=46 Score=27.83 Aligned_cols=28 Identities=36% Similarity=0.489 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 660 IVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
+.-|++++.+|.+++..|+.||..||+-
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888999999999999999999984
No 182
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.74 E-value=65 Score=25.49 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001113 609 AVVEELTSENEKLKTLVSSLEKKIDETEKK 638 (1154)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~ 638 (1154)
..++.|..|+..|+..++.|.++++++..+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666555555555443
No 183
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=34.53 E-value=2.5e+02 Score=25.10 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001113 608 HAVVEELTSENEKLKTLVSSLEKKIDET 635 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~el 635 (1154)
+.++.+....+.+|+.++..++.-+.++
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555444444444444
No 184
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=34.20 E-value=1.2e+02 Score=21.76 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 001113 661 VQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 661 ~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.+|.+++..-.++|..|+++|..|+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3455555556666666777766654
No 185
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=34.16 E-value=1.8e+02 Score=23.28 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001113 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
+...+.++.+|-+-...|.+++..++.+++.|+.++
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 334444555555555555555555555555555443
No 186
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=34.00 E-value=90 Score=24.56 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.+.+.++..+.+|++++.+|++++..-+++...+.+
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~ 40 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISE 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344566677777777777777777666665555544
No 187
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=33.90 E-value=88 Score=21.01 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 661 ~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
..+..++..|+.++..|+-|+..|+|
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555666666666666666666654
No 188
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=33.75 E-value=2e+02 Score=34.51 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=10.0
Q ss_pred ccccccccCCccc
Q 001113 68 LIGVLDIYGFESF 80 (1154)
Q Consensus 68 ~IgvLDi~GFE~f 80 (1154)
.|-++|++||-..
T Consensus 92 ~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 92 ILVLLDTEGLGDV 104 (592)
T ss_dssp EEEEEEECCBCCG
T ss_pred eEEEecCCCcCcc
Confidence 4678999998754
No 189
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=33.10 E-value=3.5e+02 Score=27.22 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=35.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001113 624 LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 624 ~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
++++-+.++...+..+..++-.....+.++..++.++..++..+...+.+|..|+.+--.
T Consensus 92 ~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS 151 (242)
T 3c9i_A 92 DVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVS 151 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCB
T ss_pred ccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhh
Confidence 333333344444444444444444445555666666777777777778888887777543
No 190
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.92 E-value=88 Score=34.49 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+.++..|+..++.++.+|.+|+..+..++.
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555554
No 191
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=32.79 E-value=1.1e+02 Score=26.36 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 001113 660 IVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
..+|-.++..++++|..|+++|..|
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555554433
No 192
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=32.73 E-value=2.9e+02 Score=25.19 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001113 610 VVEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1154)
.+++|+.|+...+.++...+.++.+.++..
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~ 52 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQY 52 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777777777776666655543
No 193
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=32.24 E-value=2.5e+02 Score=24.33 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001113 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 647 ~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
-++..+++.++..+..|...++++.-++..+++....+-
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555666666666666666555544443
No 194
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=32.21 E-value=4.8e+02 Score=27.64 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHHHhHhhhccCCCCCCchhHHHhhchHHHHHHHhhcccccccc
Q 001113 948 WQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGS 1027 (1154)
Q Consensus 948 ~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~ 1027 (1154)
+...+.-++.++.-++.. +.|.....+++-+..++...+=..++. .-++--=|+++--=++.|-.++.+.+ ...
T Consensus 127 ~~~F~~~w~~ll~p~k~~-Lt~~~y~~Ll~~~~~~la~~lE~~i~~--~~fn~lGal~LdrDvr~li~~~~~~~---~~~ 200 (263)
T 3hr0_A 127 VQQFILNLEQQMAEFKAS-LSPVIYDSLTGLMTSLVAVELEKVVLK--STFNRLGGLQFDKELRSLIAYLTTVT---TWT 200 (263)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHHHHHHHHHTTS---CTT
T ss_pred HHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHh--CCcCchhHHHHHHHHHHHHHHHHhcc---chh
Confidence 445555555555555443 335555556666666665555454443 33666668888888999989887744 356
Q ss_pred hHHHhHHHHHHHhHHhhcccccCCHHHHH-------hccCcCCCHHHHHHHHhc
Q 001113 1028 SWDELKHIRQAVGFLVIHQKYRISYDEIT-------NDLCPILSVQQLYRICTL 1074 (1154)
Q Consensus 1028 ~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~-------~~~c~~Ls~~Ql~kil~~ 1074 (1154)
.++.|..+.|.+-+|-+.. .+|+. ..+-|.|||..+.+++..
T Consensus 201 lRekF~RL~QI~~lLnle~-----~eev~d~~~~~~~~~~W~Ls~~E~r~il~l 249 (263)
T 3hr0_A 201 IRDKFARLSQMATILNLER-----VTEILDYWGPNSGPLTWRLTPAEVRQVLAL 249 (263)
T ss_dssp HHHHTHHHHHHHHHHTCSS-----GGGGGGTSGGGGTTCCCCSCHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcCCC-----hHHHHHHhcccCCCccccCCHHHHHHHHHh
Confidence 8899999999999998862 33331 235689999999999875
No 195
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=31.96 E-value=2.3e+02 Score=23.76 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001113 559 TQENAKLQSALQEMQLQFK 577 (1154)
Q Consensus 559 ~~e~~~L~~~l~~le~~l~ 577 (1154)
..|+..|..++..|..++.
T Consensus 49 ~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 49 TLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544
No 196
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=31.86 E-value=88 Score=32.59 Aligned_cols=14 Identities=7% Similarity=0.273 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001113 659 KIVQLKTAMHRLEE 672 (1154)
Q Consensus 659 ~~~~l~~~~~~Le~ 672 (1154)
.+..++..+.+|.+
T Consensus 35 rik~ne~sL~dL~d 48 (233)
T 2yko_A 35 RIKRNEQSLQEIWD 48 (233)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 197
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=31.57 E-value=95 Score=35.66 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001113 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
.+++..|..+...+..++++++.+..++.+++.. +.. .....+.++...+.++++.+++++.++++++..+
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~--~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK--APP----EEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--SCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677777777666665555555433 000 1122333444556666666666666666666543
No 198
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.02 E-value=2e+02 Score=25.08 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 001113 610 VVEELTSENEKLKTLVSSLEKKID 633 (1154)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1154)
.++.|...+.+|+.++..++..+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555554443
No 199
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=30.99 E-value=18 Score=23.43 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHHHHH
Q 001113 425 SCLRIQRDLRMYLAK 439 (1154)
Q Consensus 425 AAi~IQ~~~R~~~~R 439 (1154)
|+..||-+||.+..|
T Consensus 8 A~llI~d~~r~~k~r 22 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc
Confidence 677777777777654
No 200
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=30.68 E-value=1.2e+02 Score=26.93 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001113 614 LTSENEKLKTLVSSL 628 (1154)
Q Consensus 614 L~~e~~kLe~~l~~l 628 (1154)
|...+..|+..+.++
T Consensus 17 Lq~~~~~LE~~l~e~ 31 (95)
T 3mov_A 17 GQKESRACLERIQEL 31 (95)
T ss_dssp -CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 201
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=30.56 E-value=2.9e+02 Score=24.76 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001113 651 KQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~ 681 (1154)
.++.++.....+-++.+.+++..|..|+.|+
T Consensus 64 ArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 64 ARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455555555666666665554
No 202
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=30.23 E-value=1.3e+02 Score=30.35 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 001113 665 TAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 665 ~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
..+..++++|..|+++|..|+
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444443333
No 203
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=30.11 E-value=2.7e+02 Score=24.13 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 001113 536 QVEELTWRLQ 545 (1154)
Q Consensus 536 kv~el~~~l~ 545 (1154)
++.-++..|+
T Consensus 5 ~La~le~sLe 14 (101)
T 1d7m_A 5 RLAGLENSLE 14 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 3333433333
No 204
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=29.77 E-value=1.5e+02 Score=23.42 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 521 RETGALQAAKNKLEKQVEELTWRL 544 (1154)
Q Consensus 521 ~~~~~L~~~~~~LE~kv~el~~~l 544 (1154)
+.+.+|++.+..|-.++..|+...
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c 34 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSC 34 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666654433
No 205
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.70 E-value=1.3e+02 Score=30.09 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001113 657 ESKIVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
+.+++.+.+++.+|+.++.....+..
T Consensus 112 eakI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777766666555543
No 206
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=29.50 E-value=2.5e+02 Score=24.61 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001113 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 652 ~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
++..++.+...|..++..|+.++..|+.-+..
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555444433
No 207
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=29.36 E-value=3.3e+02 Score=24.81 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 525 ALQAAKNKLEKQVEELTWRLQLEKR--------MRVDMEEAKTQENAKLQSALQEMQLQFKESK 580 (1154)
Q Consensus 525 ~L~~~~~~LE~kv~el~~~l~~e~~--------~~~~le~~~~~e~~~L~~~l~~le~~l~~~~ 580 (1154)
.|++.....|.++.-.+++|..+++ .+..--..+..++..++..+.+++.++....
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777666777665432 2222333455666666666666666665543
No 208
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.13 E-value=38 Score=35.67 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001113 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq~ 688 (1154)
.++.+++.++..+..+++.|.+.+.+++.|+..|+.+.
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777777777754
No 209
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.79 E-value=2.8e+02 Score=27.75 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001113 657 ESKIVQLKTAMHRLEEKVSD 676 (1154)
Q Consensus 657 e~~~~~l~~~~~~Le~~i~~ 676 (1154)
+.++..|+++++.+++....
T Consensus 40 ~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 40 ATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 33333344444444443333
No 210
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.73 E-value=1.7e+02 Score=21.33 Aligned_cols=8 Identities=25% Similarity=0.314 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001113 615 TSENEKLK 622 (1154)
Q Consensus 615 ~~e~~kLe 622 (1154)
+.+...|+
T Consensus 9 enevasle 16 (49)
T 3he5_A 9 ENEVASLE 16 (49)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33333333
No 211
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.69 E-value=2.2e+02 Score=23.04 Aligned_cols=9 Identities=44% Similarity=0.796 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001113 532 KLEKQVEEL 540 (1154)
Q Consensus 532 ~LE~kv~el 540 (1154)
.||.++.+|
T Consensus 26 ~Le~~v~~L 34 (62)
T 1jnm_A 26 RLEEKVKTL 34 (62)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334433333
No 212
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=28.61 E-value=2.8e+02 Score=23.72 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001113 611 VEELTSENEKLKTLVSSLEKKIDETEKK 638 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~ 638 (1154)
+++|+.++...+.++...+.++.+.++.
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~ 34 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERA 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555555554443
No 213
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=28.22 E-value=4.1e+02 Score=25.59 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 001113 526 LQAAKNKLEKQVEEL 540 (1154)
Q Consensus 526 L~~~~~~LE~kv~el 540 (1154)
+...+..|..+..++
T Consensus 27 l~~eN~~Lk~e~e~l 41 (155)
T 2oto_A 27 LRHENKDLKARLENA 41 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444433333
No 214
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.45 E-value=2.7e+02 Score=23.30 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001113 659 KIVQLKTAMHRLEEKVSDMETENQILR 685 (1154)
Q Consensus 659 ~~~~l~~~~~~Le~~i~~Le~e~~~l~ 685 (1154)
.+...+.++.+|+-.+..|+.|++.++
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344456666666667777777766654
No 215
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=27.36 E-value=2.6e+02 Score=23.01 Aligned_cols=46 Identities=20% Similarity=0.132 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 641 ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 641 e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
+...+..++..-+..+..++.++.+-.+.|+.+....+.....|.+
T Consensus 14 ~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k 59 (74)
T 2q6q_A 14 EKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEK 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Confidence 3333334444444444455544544445555555444444444444
No 216
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=27.26 E-value=4.2e+02 Score=27.55 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 633 DETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 633 ~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
.++..+++.+......+..++ +.++++-..|+..+..+++.++.++.
T Consensus 180 ~EID~KI~~L~~mR~~vl~RL-------A~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 180 RDIEVEVENLRQKKEKLLGKI-------ANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333 44444444455555555555544444
No 217
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.21 E-value=1.2e+02 Score=21.67 Aligned_cols=24 Identities=46% Similarity=0.464 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 608 HAVVEELTSENEKLKTLVSSLEKK 631 (1154)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~ 631 (1154)
++++++|..++..|+.++..|++-
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 218
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.19 E-value=2.2e+02 Score=24.72 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 001113 655 EAESKIVQLKTAMHRLEEKVSDMET 679 (1154)
Q Consensus 655 ~~e~~~~~l~~~~~~Le~~i~~Le~ 679 (1154)
.-.+.+..+++.+.+.+.+|.+|+.
T Consensus 55 ~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 55 HHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444555555555555555543
No 219
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.02 E-value=1.9e+02 Score=23.66 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 001113 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1154)
Q Consensus 663 l~~~~~~Le~~i~~Le~e~~~l~q 686 (1154)
|+.++..|+.+...|..++..|++
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433
No 220
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.58 E-value=1.4e+02 Score=20.24 Aligned_cols=18 Identities=22% Similarity=0.577 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 001113 662 QLKTAMHRLEEKVSDMET 679 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le~ 679 (1154)
+++.-+++|++++..|++
T Consensus 10 ~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 10 NLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 221
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.46 E-value=1.2e+02 Score=34.55 Aligned_cols=14 Identities=7% Similarity=-0.062 Sum_probs=6.4
Q ss_pred HhhchHHHHHHHhh
Q 001113 1006 VKAGLAELELWCCQ 1019 (1154)
Q Consensus 1006 Ir~nls~Le~W~~~ 1019 (1154)
|-|.=|.|-..+++
T Consensus 332 iPyRdSkLT~LLqd 345 (412)
T 3u06_A 332 IPYRNSKLTHLLMP 345 (412)
T ss_dssp CCGGGSHHHHHHGG
T ss_pred CCccccHHHHHHHH
Confidence 44444444444443
No 222
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=26.42 E-value=3.9e+02 Score=24.76 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 001113 568 ALQEMQLQFKES 579 (1154)
Q Consensus 568 ~l~~le~~l~~~ 579 (1154)
++..|+.+++.+
T Consensus 10 ~l~~Leae~q~L 21 (119)
T 3etw_A 10 ELQALDAEYQNL 21 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 223
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=26.41 E-value=4.7e+02 Score=25.63 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQL 663 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l 663 (1154)
+..+..=++-+...+.+++..+.+..+.+....+........+..+.....++
T Consensus 73 i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 73 ILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444433333333333333333333333333
No 224
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.10 E-value=2e+02 Score=21.37 Aligned_cols=8 Identities=25% Similarity=0.306 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001113 663 LKTAMHRL 670 (1154)
Q Consensus 663 l~~~~~~L 670 (1154)
|+.+..-|
T Consensus 29 Lq~EN~mL 36 (42)
T 2oqq_A 29 LQNENQML 36 (42)
T ss_dssp HHHHHHHH
T ss_pred HHHhHHHH
Confidence 33333333
No 225
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=26.08 E-value=3.5e+02 Score=24.02 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001113 611 VEELTSENEKLKTLVSSLEKKIDETEKK 638 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~ 638 (1154)
+++|+.++...+.++...+.++.+.++.
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~ 34 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERA 34 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555555443
No 226
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.68 E-value=1.6e+02 Score=32.51 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=5.2
Q ss_pred chhhHHHh
Q 001113 814 HMAYWLSN 821 (1154)
Q Consensus 814 ~l~fWLSN 821 (1154)
..-|||.|
T Consensus 145 ~gEfWLGl 152 (323)
T 1lwu_C 145 TTEFWLGN 152 (323)
T ss_dssp CSCEECCH
T ss_pred CccEEecc
Confidence 45677766
No 227
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=25.66 E-value=3.2e+02 Score=30.12 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 653 l~~~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
++.++..+...+.+++.++.++..++.+++.++.+
T Consensus 117 ~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 117 LNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777777777777777777664
No 228
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.62 E-value=4.1e+02 Score=24.69 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001113 560 QENAKLQSALQEMQLQFKESKEK 582 (1154)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~~ 582 (1154)
+|+..|+.++..++..++++...
T Consensus 60 KEi~~Lrae~~~~QRn~~K~~~~ 82 (167)
T 4gkw_A 60 KEIGKLRAELGTAQRNLEKADQL 82 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 44445554444444444444433
No 229
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=25.46 E-value=2.9e+02 Score=22.93 Aligned_cols=55 Identities=16% Similarity=0.293 Sum_probs=22.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001113 626 SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1154)
Q Consensus 626 ~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i~~Le~e 680 (1154)
..|++++.+-+.++..++....-..+..+.+...+-.+.-+..-|++++..+++|
T Consensus 21 ~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 21 AILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 3334444444444444433333333333344444445555555566666665543
No 230
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=25.15 E-value=3.2e+02 Score=24.24 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=5.2
Q ss_pred HHHHhHHHHHHHHHH
Q 001113 628 LEKKIDETEKKFEET 642 (1154)
Q Consensus 628 l~~~l~ele~~~~e~ 642 (1154)
++.....++..+.++
T Consensus 17 Lq~~~~~LE~~l~e~ 31 (95)
T 3mov_A 17 GQKESRACLERIQEL 31 (95)
T ss_dssp -CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 231
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.98 E-value=5.6e+02 Score=26.65 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 001113 662 QLKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
.+-..++.++..=..|+.++..
T Consensus 195 ~vl~RLA~lEqdEl~LE~eL~~ 216 (242)
T 3uux_B 195 KLLGKIANIEQNQLLLEDNLKQ 216 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 3344444444444444444433
No 232
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.72 E-value=3.3e+02 Score=23.28 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 001113 656 AESKIVQLKTAMHRLEEKVSDM 677 (1154)
Q Consensus 656 ~e~~~~~l~~~~~~Le~~i~~L 677 (1154)
++.+...|..++..|+.++..|
T Consensus 48 L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 48 LTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444433
No 233
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.08 E-value=1.3e+02 Score=19.95 Aligned_cols=10 Identities=30% Similarity=0.497 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 001113 620 KLKTLVSSLE 629 (1154)
Q Consensus 620 kLe~~l~~l~ 629 (1154)
.|+..++.++
T Consensus 12 alesklqale 21 (31)
T 3ljm_A 12 ALESKLQALE 21 (31)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 234
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=24.01 E-value=1e+02 Score=22.02 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 001113 665 TAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 665 ~~~~~Le~~i~~Le~e~~~l 684 (1154)
..+++|-.+...|+.|...|
T Consensus 8 ~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 33333333333333333333
No 235
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=23.78 E-value=2.7e+02 Score=21.95 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001113 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1154)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~ 644 (1154)
+-.|..+...|+++...+.+.+++..+...++++
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555544455445444444444443
No 236
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.40 E-value=2.3e+02 Score=20.94 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001113 658 SKIVQLKTAMHRLEEKVS 675 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~ 675 (1154)
+-+..+..++.+|+.++.
T Consensus 31 kiianlrdeiarleneva 48 (52)
T 3he5_B 31 KIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334445555555555443
No 237
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=22.45 E-value=4.1e+02 Score=23.57 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 524 GALQAAKNKLEKQVEELTWRLQLEKR--------MRVDMEEAKTQENAKLQSALQEMQLQFKESKE 581 (1154)
Q Consensus 524 ~~L~~~~~~LE~kv~el~~~l~~e~~--------~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~ 581 (1154)
..|++.....|.++.-..++|..+++ .+..--..+..++..++..+.+++.++.....
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 8 KEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666667777777777765432 22333335556666777777777766665543
No 238
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.25 E-value=1.8e+02 Score=19.68 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 001113 615 TSENEKLKTLVSSLEKKIDET 635 (1154)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~el 635 (1154)
+.+..+|..-+.+|+++++.+
T Consensus 5 ee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333
No 239
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=22.17 E-value=3.7e+02 Score=22.95 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 524 GALQAAKNKLEKQVEELTWRLQLEKR--------MRVDMEEAKTQENAKLQSALQEMQLQFKESK 580 (1154)
Q Consensus 524 ~~L~~~~~~LE~kv~el~~~l~~e~~--------~~~~le~~~~~e~~~L~~~l~~le~~l~~~~ 580 (1154)
..|++.....|.++.-..++|..+++ .+..--..+..++..++..+.+++.++....
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 8 KEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777765432 2222333455666667777777666665543
No 240
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.66 E-value=1.7e+02 Score=25.08 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 658 ~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.-+..|+.++..|+.++..|+.++..|+++
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666666666654
No 241
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=21.64 E-value=9.5e+02 Score=27.52 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001113 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1154)
Q Consensus 656 ~e~~~~~l~~~~~~Le~~i~~Le~e~~~l~qq 687 (1154)
.+..+..|+..+..+..+|++|+..+..++..
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34556677777777777888888777777664
No 242
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=21.29 E-value=4.9e+02 Score=24.08 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 001113 660 IVQLKTAMHRLEEKVSDMETENQ 682 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~Le~e~~ 682 (1154)
+.+++..+.+|+.+|...+.-++
T Consensus 77 ~k~Y~~~~keLd~~ik~qekiId 99 (119)
T 3etw_A 77 ASKYEDALKKLEAEMEQQKAVIS 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 243
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.19 E-value=1.3e+02 Score=21.23 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001113 651 KQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1154)
Q Consensus 651 ~~l~~~e~~~~~l~~~~~~Le~~i~~Le~ 679 (1154)
.+..+++.++.+|-.+..+|+.++.+|++
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHH
No 244
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=21.11 E-value=1.8e+02 Score=20.47 Aligned_cols=16 Identities=0% Similarity=0.034 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHhH
Q 001113 662 QLKTAMHRLEEKVSDM 677 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~L 677 (1154)
++-.+...|+.++.+|
T Consensus 11 ell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 11 ENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHH
Confidence 3333333444444433
No 245
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.95 E-value=1.1e+02 Score=19.64 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 001113 663 LKTAMHRLEEKVSDMETENQI 683 (1154)
Q Consensus 663 l~~~~~~Le~~i~~Le~e~~~ 683 (1154)
+..++.+|+.++..|+.|...
T Consensus 5 lkdevgelkgevralkdevkd 25 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhc
Confidence 445555555555555555543
No 246
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.93 E-value=1.5e+02 Score=20.88 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 001113 660 IVQLKTAMHRLEEKVSDME 678 (1154)
Q Consensus 660 ~~~l~~~~~~Le~~i~~Le 678 (1154)
+.+|-.+..+|+.++.+|+
T Consensus 9 VEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3334444444444444443
No 247
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.92 E-value=2.9e+02 Score=21.31 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001113 625 VSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1154)
Q Consensus 625 l~~l~~~l~ele~~~~e~~~~~~~~~~~l~~~e~~~~~l~~~~~~Le~~i 674 (1154)
++.|-..++.+.++...+.++.++-...+..++.....+++-+..|+..|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~~i 54 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGSI 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcccC
No 248
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=20.85 E-value=3.9e+02 Score=23.28 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 001113 662 QLKTAMHRLEEKVSDMETENQIL 684 (1154)
Q Consensus 662 ~l~~~~~~Le~~i~~Le~e~~~l 684 (1154)
....++.....++..|++++..|
T Consensus 60 ~V~~eL~~sn~kl~~L~~eL~eL 82 (86)
T 1cxz_B 60 PVELLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555544
No 249
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=20.35 E-value=5.1e+02 Score=33.18 Aligned_cols=59 Identities=12% Similarity=-0.027 Sum_probs=36.4
Q ss_pred ccchhhhchhhhHHHHHHHHHhhhhhhhhhh----ccchhhhhhHHHHHHHHHHHHHHHHhhh
Q 001113 389 LSRKNYIMLRRSAIHIQAACRGQLARTVYES----MRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1154)
Q Consensus 389 ~~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~----~r~~~AAi~IQ~~~R~~~~Rk~y~~~r~ 447 (1154)
+...+-.++..+++.||...|+...++.++. ++.......++...+.+.+++.|....+
T Consensus 754 LE~~R~~~l~~~~~~iQY~~~a~~L~~WIr~kqa~l~~r~~~~sl~~IQ~ll~~f~~fk~~~k 816 (1010)
T 1g8x_A 754 IEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEK 816 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccC
Confidence 3334444566778888877776654443322 2223334468888888888888887644
No 250
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.21 E-value=3e+02 Score=21.10 Aligned_cols=8 Identities=13% Similarity=0.526 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001113 565 LQSALQEM 572 (1154)
Q Consensus 565 L~~~l~~l 572 (1154)
|+.++..+
T Consensus 35 lKqRit~l 42 (46)
T 3swy_A 35 MKQRLSQL 42 (46)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
Done!