Query 001114
Match_columns 1154
No_of_seqs 163 out of 224
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 16:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4572 Predicted DNA-binding 100.0 3.3E-37 7.2E-42 357.8 40.4 463 21-525 2-587 (1424)
2 PF10377 ATG11: Autophagy-rela 100.0 8.3E-31 1.8E-35 260.2 12.1 121 977-1143 4-129 (129)
3 PF04108 APG17: Autophagy prot 99.9 1.7E-23 3.7E-28 245.1 44.2 337 145-499 20-411 (412)
4 KOG4250 TANK binding protein k 97.5 0.23 4.9E-06 61.9 34.3 161 13-202 314-474 (732)
5 cd01807 GDX_N ubiquitin-like d 97.0 0.0014 3.1E-08 59.4 6.2 68 16-84 2-70 (74)
6 PF00240 ubiquitin: Ubiquitin 97.0 0.0015 3.3E-08 57.9 6.3 65 21-86 3-67 (69)
7 cd01812 BAG1_N Ubiquitin-like 97.0 0.0018 3.8E-08 57.8 6.4 67 16-83 2-68 (71)
8 cd01794 DC_UbP_C dendritic cel 96.9 0.0018 4E-08 58.5 5.7 64 19-83 4-67 (70)
9 cd01805 RAD23_N Ubiquitin-like 96.9 0.0028 6.1E-08 57.5 6.8 64 20-84 7-72 (77)
10 cd01793 Fubi Fubi ubiquitin-li 96.7 0.0032 6.9E-08 57.1 6.2 68 16-85 2-69 (74)
11 cd01798 parkin_N amino-termina 96.7 0.0039 8.5E-08 55.8 6.5 66 18-84 3-68 (70)
12 cd01791 Ubl5 UBL5 ubiquitin-li 96.7 0.0058 1.2E-07 55.8 7.6 68 16-84 3-71 (73)
13 cd01806 Nedd8 Nebb8-like ubiq 96.7 0.0048 1E-07 55.5 7.0 66 20-86 7-72 (76)
14 cd01796 DDI1_N DNA damage indu 96.7 0.0039 8.6E-08 56.3 6.1 60 16-75 2-62 (71)
15 cd01800 SF3a120_C Ubiquitin-li 96.6 0.0032 6.9E-08 57.6 5.4 65 21-86 5-69 (76)
16 PTZ00044 ubiquitin; Provisiona 96.6 0.0049 1.1E-07 55.9 6.2 68 16-84 2-70 (76)
17 cd01809 Scythe_N Ubiquitin-lik 96.6 0.0055 1.2E-07 54.6 6.4 63 20-83 7-69 (72)
18 cd01803 Ubiquitin Ubiquitin. U 96.5 0.0063 1.4E-07 54.8 6.5 66 20-86 7-72 (76)
19 cd01810 ISG15_repeat2 ISG15 ub 96.5 0.0063 1.4E-07 55.2 6.5 68 18-86 3-70 (74)
20 cd01802 AN1_N ubiquitin-like d 96.5 0.0074 1.6E-07 58.7 7.2 73 11-84 24-97 (103)
21 cd01799 Hoil1_N Ubiquitin-like 96.4 0.0054 1.2E-07 56.3 5.6 62 22-84 11-73 (75)
22 smart00213 UBQ Ubiquitin homol 96.3 0.0075 1.6E-07 52.0 5.5 60 16-75 2-61 (64)
23 cd01813 UBP_N UBP ubiquitin pr 96.3 0.011 2.3E-07 54.1 6.4 60 16-75 2-64 (74)
24 cd01769 UBL Ubiquitin-like dom 96.1 0.017 3.8E-07 50.4 6.6 63 22-85 6-68 (69)
25 PF06160 EzrA: Septation ring 96.0 6.5 0.00014 49.2 33.5 121 357-477 279-417 (560)
26 cd01804 midnolin_N Ubiquitin-l 95.9 0.026 5.7E-07 52.0 7.3 68 15-84 2-70 (78)
27 cd01792 ISG15_repeat1 ISG15 ub 95.9 0.019 4.2E-07 53.0 6.4 66 20-86 9-76 (80)
28 cd01797 NIRF_N amino-terminal 95.9 0.022 4.7E-07 52.6 6.6 64 20-84 7-72 (78)
29 PRK04778 septation ring format 95.5 9.4 0.0002 47.9 29.5 119 357-475 283-419 (569)
30 cd01808 hPLIC_N Ubiquitin-like 94.7 0.069 1.5E-06 48.0 5.8 63 19-83 6-68 (71)
31 PRK11637 AmiB activator; Provi 93.6 3.6 7.9E-05 49.6 19.2 52 821-872 46-97 (428)
32 KOG0243 Kinesin-like protein [ 93.5 1.4 3E-05 57.5 15.8 183 817-1010 443-662 (1041)
33 KOG0004 Ubiquitin/40S ribosoma 92.8 0.08 1.7E-06 54.6 3.0 75 16-91 2-77 (156)
34 cd01763 Sumo Small ubiquitin-r 92.7 0.51 1.1E-05 44.4 8.0 74 12-86 9-83 (87)
35 KOG0003 Ubiquitin/60s ribosoma 92.6 0.051 1.1E-06 52.5 1.1 68 16-84 3-70 (128)
36 TIGR00601 rad23 UV excision re 91.2 0.4 8.7E-06 56.8 6.7 68 20-87 7-77 (378)
37 COG3883 Uncharacterized protei 90.6 7.2 0.00016 44.2 15.3 52 821-872 44-95 (265)
38 cd01789 Alp11_N Ubiquitin-like 90.5 1.5 3.3E-05 41.0 8.6 69 17-86 6-81 (84)
39 PF14560 Ubiquitin_2: Ubiquiti 90.4 0.92 2E-05 42.5 7.1 71 15-86 2-83 (87)
40 PF04108 APG17: Autophagy prot 90.2 51 0.0011 39.9 32.2 20 432-451 375-394 (412)
41 PF15450 DUF4631: Domain of un 88.6 72 0.0016 39.4 25.7 32 166-197 262-293 (531)
42 cd00196 UBQ Ubiquitin-like pro 88.0 1.6 3.4E-05 35.3 6.1 62 22-84 6-67 (69)
43 PF11559 ADIP: Afadin- and alp 87.8 6.7 0.00015 40.5 11.9 99 821-919 51-150 (151)
44 PF00261 Tropomyosin: Tropomyo 86.5 23 0.0005 39.5 16.0 48 962-1009 172-219 (237)
45 KOG0005 Ubiquitin-like protein 86.3 0.47 1E-05 41.6 2.0 55 20-74 7-61 (70)
46 KOG0010 Ubiquitin-like protein 84.7 2.3 5E-05 51.4 7.4 78 14-92 15-92 (493)
47 cd01795 USP48_C USP ubiquitin- 84.4 2.1 4.5E-05 41.6 5.5 57 27-84 18-75 (107)
48 cd01815 BMSC_UbP_N Ubiquitin-l 84.3 1.7 3.7E-05 40.2 4.8 53 32-85 19-74 (75)
49 COG1196 Smc Chromosome segrega 82.9 2.1E+02 0.0045 39.5 62.2 55 956-1010 867-921 (1163)
50 PF11976 Rad60-SLD: Ubiquitin- 82.4 2.5 5.4E-05 37.8 5.0 58 18-75 5-63 (72)
51 KOG0976 Rho/Rac1-interacting s 80.6 68 0.0015 41.3 17.6 183 822-1016 92-306 (1265)
52 KOG0001 Ubiquitin and ubiquiti 80.5 7.2 0.00016 33.4 7.2 64 20-84 6-69 (75)
53 PF04740 LXG: LXG domain of WX 77.1 91 0.002 33.5 15.9 40 238-281 92-132 (204)
54 PF10146 zf-C4H2: Zinc finger- 76.8 26 0.00056 39.2 11.7 94 818-911 7-100 (230)
55 cd01790 Herp_N Homocysteine-re 76.5 6.7 0.00014 36.7 6.0 64 20-83 8-76 (79)
56 cd01801 Tsc13_N Ubiquitin-like 76.3 8.2 0.00018 35.4 6.5 69 16-85 2-76 (77)
57 KOG0011 Nucleotide excision re 76.3 28 0.00062 40.5 12.0 69 20-88 7-77 (340)
58 PF12128 DUF3584: Protein of u 76.0 3.3E+02 0.0071 37.8 66.4 44 876-919 730-781 (1201)
59 PF05377 FlaC_arch: Flagella a 75.9 7.3 0.00016 34.1 5.5 41 838-881 2-42 (55)
60 KOG0963 Transcription factor/C 75.1 79 0.0017 39.8 16.0 83 821-903 202-299 (629)
61 PRK03918 chromosome segregatio 74.7 1.1E+02 0.0024 40.3 18.7 29 827-855 198-226 (880)
62 cd07664 BAR_SNX2 The Bin/Amphi 74.0 1.6E+02 0.0034 33.2 21.8 55 353-408 96-150 (234)
63 cd07665 BAR_SNX1 The Bin/Amphi 73.3 1.7E+02 0.0036 33.1 20.5 133 349-485 92-231 (234)
64 PF14197 Cep57_CLD_2: Centroso 73.2 14 0.0003 33.8 6.9 50 822-871 5-68 (69)
65 PF06160 EzrA: Septation ring 71.9 2.8E+02 0.0061 35.1 34.3 155 167-321 152-332 (560)
66 COG4942 Membrane-bound metallo 71.8 25 0.00055 42.4 10.6 81 823-903 183-264 (420)
67 PRK15048 methyl-accepting chem 71.6 2.7E+02 0.0058 34.7 21.1 89 857-945 305-411 (553)
68 PF05911 DUF869: Plant protein 71.5 62 0.0013 42.2 14.7 173 820-1016 118-309 (769)
69 KOG1962 B-cell receptor-associ 70.9 18 0.00039 39.9 8.5 74 823-907 135-208 (216)
70 PLN02560 enoyl-CoA reductase 69.9 14 0.00031 42.9 8.0 65 20-85 7-82 (308)
71 PF07926 TPR_MLP1_2: TPR/MLP1/ 69.1 27 0.00059 35.5 8.9 71 831-915 5-75 (132)
72 PF07106 TBPIP: Tat binding pr 68.7 15 0.00033 38.7 7.3 66 820-885 70-137 (169)
73 PF05483 SCP-1: Synaptonemal c 66.9 97 0.0021 39.5 14.3 131 811-944 229-367 (786)
74 PF04156 IncA: IncA protein; 66.4 78 0.0017 33.8 12.3 81 823-903 89-169 (191)
75 cd07623 BAR_SNX1_2 The Bin/Amp 66.4 2.1E+02 0.0047 31.6 20.1 41 445-485 181-221 (224)
76 COG4942 Membrane-bound metallo 65.6 2.6E+02 0.0056 34.2 17.2 85 820-908 43-128 (420)
77 cd01788 ElonginB Ubiquitin-lik 65.6 13 0.00028 37.2 5.5 59 17-75 5-63 (119)
78 PRK13169 DNA replication intia 64.1 23 0.0005 35.3 7.0 48 822-869 8-55 (110)
79 PF10473 CENP-F_leu_zip: Leuci 63.8 23 0.00051 36.7 7.2 70 816-885 46-115 (140)
80 KOG2196 Nuclear porin [Nuclear 63.4 2.6E+02 0.0057 31.6 17.9 75 299-379 175-249 (254)
81 PF06156 DUF972: Protein of un 63.2 24 0.00053 34.9 7.0 50 822-871 8-57 (107)
82 PF09730 BicD: Microtubule-ass 63.1 3.8E+02 0.0083 35.0 19.0 157 821-1010 19-183 (717)
83 PF10168 Nup88: Nuclear pore c 63.1 4.6E+02 0.01 34.3 24.8 46 177-222 580-625 (717)
84 PRK04778 septation ring format 62.6 4.1E+02 0.009 33.6 30.8 26 174-199 163-188 (569)
85 PF06005 DUF904: Protein of un 62.1 75 0.0016 29.4 9.4 35 836-870 4-38 (72)
86 PF09726 Macoilin: Transmembra 61.2 1.4E+02 0.0031 38.7 15.0 150 822-1010 425-575 (697)
87 PF13870 DUF4201: Domain of un 60.7 93 0.002 33.1 11.4 122 823-972 50-172 (177)
88 COG1579 Zn-ribbon protein, pos 59.6 71 0.0015 36.0 10.6 32 639-670 49-80 (239)
89 PF08580 KAR9: Yeast cortical 59.3 5.2E+02 0.011 33.7 19.7 80 243-322 38-122 (683)
90 PF05335 DUF745: Protein of un 58.6 1E+02 0.0022 33.6 11.2 81 822-902 74-157 (188)
91 KOG0250 DNA repair protein RAD 58.5 6.3E+02 0.014 34.4 54.9 45 157-201 209-253 (1074)
92 KOG1318 Helix loop helix trans 57.7 30 0.00065 41.7 7.7 84 586-671 243-326 (411)
93 KOG0018 Structural maintenance 56.4 2.2E+02 0.0047 38.3 15.2 161 817-998 647-825 (1141)
94 PF12179 IKKbetaNEMObind: I-ka 56.0 13 0.00029 30.1 3.0 24 863-886 2-25 (38)
95 KOG0995 Centromere-associated 55.3 5.4E+02 0.012 32.6 30.1 193 188-407 365-569 (581)
96 PF10174 Cast: RIM-binding pro 55.2 4.1E+02 0.0089 35.1 17.6 26 822-847 399-424 (775)
97 cd01814 NTGP5 Ubiquitin-like N 55.0 12 0.00025 37.4 3.2 59 18-76 9-75 (113)
98 PF15272 BBP1_C: Spindle pole 54.8 43 0.00093 36.6 7.6 24 647-670 130-153 (196)
99 COG1579 Zn-ribbon protein, pos 54.6 89 0.0019 35.3 10.3 12 909-920 174-185 (239)
100 COG4467 Regulator of replicati 53.7 37 0.00079 33.6 6.2 47 822-868 8-54 (114)
101 PF04102 SlyX: SlyX; InterPro 53.4 48 0.001 30.2 6.6 49 822-870 4-52 (69)
102 PF09731 Mitofilin: Mitochondr 52.9 5E+02 0.011 32.8 17.9 160 873-1056 343-536 (582)
103 KOG0946 ER-Golgi vesicle-tethe 52.1 1.1E+02 0.0025 39.6 11.6 224 583-904 619-870 (970)
104 TIGR01843 type_I_hlyD type I s 51.4 1.6E+02 0.0034 35.0 12.5 45 823-867 145-189 (423)
105 PF03915 AIP3: Actin interacti 50.9 3.1E+02 0.0068 33.6 14.8 71 357-427 251-321 (424)
106 PRK09039 hypothetical protein; 50.8 1.1E+02 0.0024 36.2 10.9 48 824-871 118-165 (343)
107 PF09726 Macoilin: Transmembra 50.8 1.2E+02 0.0025 39.5 11.8 82 821-902 551-649 (697)
108 KOG3091 Nuclear pore complex, 50.5 2.4E+02 0.0052 34.9 13.5 34 824-857 336-369 (508)
109 PF12777 MT: Microtubule-bindi 50.2 57 0.0012 38.4 8.5 74 824-901 216-289 (344)
110 PF12718 Tropomyosin_1: Tropom 49.3 2.5E+02 0.0054 29.2 12.0 44 826-869 25-68 (143)
111 PF10267 Tmemb_cc2: Predicted 49.2 5.4E+02 0.012 31.3 16.3 23 642-664 62-84 (395)
112 PRK04325 hypothetical protein; 48.7 70 0.0015 29.6 7.0 49 822-870 9-57 (74)
113 PRK00736 hypothetical protein; 47.5 78 0.0017 28.9 7.0 49 822-870 5-53 (68)
114 PF09177 Syntaxin-6_N: Syntaxi 47.2 2.5E+02 0.0054 27.0 10.9 37 422-458 60-96 (97)
115 PF12718 Tropomyosin_1: Tropom 47.1 2.5E+02 0.0054 29.2 11.5 87 825-919 17-104 (143)
116 PF03962 Mnd1: Mnd1 family; I 46.7 1.6E+02 0.0034 32.0 10.5 27 822-848 69-95 (188)
117 cd00176 SPEC Spectrin repeats, 46.1 3.6E+02 0.0077 27.9 18.3 42 242-287 137-178 (213)
118 COG3883 Uncharacterized protei 46.0 75 0.0016 36.3 8.1 61 820-880 36-96 (265)
119 PF03449 GreA_GreB_N: Transcri 45.6 82 0.0018 29.2 6.9 25 643-667 47-71 (74)
120 PF04156 IncA: IncA protein; 44.8 2.5E+02 0.0055 29.9 11.7 50 823-872 82-131 (191)
121 PRK00295 hypothetical protein; 44.8 93 0.002 28.4 7.1 47 823-869 6-52 (68)
122 TIGR01069 mutS2 MutS2 family p 44.5 1E+02 0.0023 40.3 10.3 72 822-899 511-582 (771)
123 PRK00846 hypothetical protein; 44.4 91 0.002 29.3 7.0 50 821-870 12-61 (77)
124 cd08915 V_Alix_like Protein-in 44.1 5.9E+02 0.013 29.9 28.5 44 243-286 135-178 (342)
125 KOG2196 Nuclear porin [Nuclear 43.5 5.4E+02 0.012 29.3 20.0 159 144-327 82-251 (254)
126 PRK02119 hypothetical protein; 43.4 95 0.0021 28.7 7.0 50 821-870 8-57 (73)
127 PF04880 NUDE_C: NUDE protein, 42.9 36 0.00079 36.3 4.8 45 838-889 2-46 (166)
128 PRK15422 septal ring assembly 42.0 2.3E+02 0.0051 26.8 9.1 35 837-871 5-39 (79)
129 PF10805 DUF2730: Protein of u 41.7 1.1E+02 0.0025 30.0 7.8 52 820-871 33-86 (106)
130 KOG4643 Uncharacterized coiled 41.6 5.3E+02 0.011 34.8 15.2 92 816-921 409-500 (1195)
131 PRK05892 nucleoside diphosphat 41.6 60 0.0013 34.2 6.2 24 647-670 52-75 (158)
132 PF06730 FAM92: FAM92 protein; 41.3 5.6E+02 0.012 28.8 15.8 62 167-229 9-70 (219)
133 PRK13922 rod shape-determining 41.2 1.6E+02 0.0036 33.3 10.1 97 980-1086 69-171 (276)
134 PF13949 ALIX_LYPXL_bnd: ALIX 41.1 5.8E+02 0.013 28.9 31.5 45 243-287 86-130 (296)
135 PF10186 Atg14: UV radiation r 40.0 2.9E+02 0.0063 31.1 12.0 50 823-872 57-106 (302)
136 PF00038 Filament: Intermediat 40.0 6.3E+02 0.014 29.0 21.0 175 821-1010 46-232 (312)
137 KOG0612 Rho-associated, coiled 39.7 8.2E+02 0.018 33.8 16.7 15 927-941 582-596 (1317)
138 COG2433 Uncharacterized conser 39.6 2.2E+02 0.0048 36.1 11.2 54 814-867 414-467 (652)
139 PRK04406 hypothetical protein; 39.6 1.2E+02 0.0025 28.3 7.0 46 823-868 12-57 (75)
140 PF11932 DUF3450: Protein of u 39.5 3.3E+02 0.0072 30.6 12.1 16 1023-1038 184-199 (251)
141 TIGR02894 DNA_bind_RsfA transc 39.3 94 0.002 33.0 7.0 50 838-887 106-155 (161)
142 PF08826 DMPK_coil: DMPK coile 38.8 1.1E+02 0.0025 27.4 6.5 30 834-863 30-59 (61)
143 PRK10803 tol-pal system protei 38.8 73 0.0016 36.3 6.8 52 821-872 39-90 (263)
144 PF12329 TMF_DNA_bd: TATA elem 38.2 1.4E+02 0.0031 27.6 7.3 16 827-842 3-18 (74)
145 TIGR00998 8a0101 efflux pump m 37.9 3.8E+02 0.0083 30.8 12.7 59 821-879 79-137 (334)
146 cd09234 V_HD-PTP_like Protein- 37.5 7.5E+02 0.016 29.1 29.4 47 243-289 133-179 (337)
147 COG2433 Uncharacterized conser 37.4 1.2E+02 0.0026 38.2 8.6 60 822-881 436-505 (652)
148 PF08537 NBP1: Fungal Nap bind 37.4 69 0.0015 37.4 6.2 39 845-883 184-222 (323)
149 PF09789 DUF2353: Uncharacteri 37.3 5.4E+02 0.012 30.4 13.4 34 630-663 4-37 (319)
150 PF10168 Nup88: Nuclear pore c 37.1 1.1E+03 0.024 31.0 21.7 31 351-381 684-714 (717)
151 PF13935 Ead_Ea22: Ead/Ea22-li 36.9 1.8E+02 0.0039 30.0 8.6 47 820-866 65-113 (139)
152 PF04102 SlyX: SlyX; InterPro 36.7 99 0.0021 28.1 6.0 51 835-885 3-53 (69)
153 PHA02940 hypothetical protein; 36.6 7E+02 0.015 28.6 13.4 147 852-1010 37-210 (315)
154 PRK00409 recombination and DNA 36.1 1.7E+02 0.0036 38.6 10.2 72 822-899 516-587 (782)
155 PF10191 COG7: Golgi complex c 36.0 1.3E+02 0.0029 39.4 9.3 141 821-992 37-183 (766)
156 PF04100 Vps53_N: Vps53-like, 35.3 8.7E+02 0.019 29.3 22.4 52 468-525 244-295 (383)
157 cd07595 BAR_RhoGAP_Rich-like T 35.3 2.3E+02 0.0049 32.1 9.9 84 822-908 121-214 (244)
158 PF10498 IFT57: Intra-flagella 34.7 8.8E+02 0.019 29.1 15.6 36 238-273 216-252 (359)
159 KOG4360 Uncharacterized coiled 34.6 1.6E+02 0.0035 36.4 8.8 69 820-888 210-299 (596)
160 PF01763 Herpes_UL6: Herpesvir 34.2 61 0.0013 40.7 5.5 81 635-725 370-454 (557)
161 PRK02793 phi X174 lysis protei 33.8 1.7E+02 0.0036 27.0 7.0 46 823-868 9-54 (72)
162 PF04100 Vps53_N: Vps53-like, 33.3 9.4E+02 0.02 29.0 24.0 25 297-321 73-97 (383)
163 PF07061 Swi5: Swi5; InterPro 33.2 1.7E+02 0.0036 27.9 7.0 27 893-919 40-66 (83)
164 PF11433 DUF3198: Protein of u 33.1 53 0.0011 28.0 3.2 29 852-887 20-48 (51)
165 PF13758 Prefoldin_3: Prefoldi 33.1 69 0.0015 31.4 4.6 82 581-666 11-99 (99)
166 PF10186 Atg14: UV radiation r 32.7 4.8E+02 0.01 29.4 12.2 21 952-972 252-272 (302)
167 PF13874 Nup54: Nucleoporin co 32.7 1.6E+02 0.0034 30.5 7.4 100 823-936 31-137 (141)
168 PF11543 UN_NPL4: Nuclear pore 32.6 51 0.0011 30.9 3.5 59 25-84 15-78 (80)
169 smart00806 AIP3 Actin interact 32.3 1E+03 0.022 29.2 25.6 160 244-427 155-325 (426)
170 PF04111 APG6: Autophagy prote 32.2 3.8E+02 0.0082 31.4 11.3 49 822-870 43-91 (314)
171 PRK04406 hypothetical protein; 31.8 1.8E+02 0.0039 27.1 6.9 52 831-882 6-57 (75)
172 COG4026 Uncharacterized protei 31.8 3.7E+02 0.008 30.1 10.2 61 812-872 97-171 (290)
173 PF10174 Cast: RIM-binding pro 31.7 1.4E+03 0.03 30.5 19.1 106 815-920 294-424 (775)
174 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.6 2.5E+02 0.0054 28.6 8.6 62 835-903 58-119 (132)
175 PF15619 Lebercilin: Ciliary p 31.2 4.8E+02 0.011 28.6 11.2 79 821-903 67-146 (194)
176 PF13870 DUF4201: Domain of un 30.7 2.6E+02 0.0055 29.7 8.9 89 820-908 61-161 (177)
177 cd07669 BAR_SNX33 The Bin/Amph 30.4 7.8E+02 0.017 27.4 12.5 60 383-442 105-168 (207)
178 PRK13729 conjugal transfer pil 30.4 1.1E+02 0.0024 37.7 6.7 45 828-872 68-112 (475)
179 PRK02793 phi X174 lysis protei 30.0 1.6E+02 0.0034 27.2 6.2 50 834-883 6-55 (72)
180 PF01442 Apolipoprotein: Apoli 29.5 6.4E+02 0.014 25.9 14.1 23 986-1008 165-187 (202)
181 PF10211 Ax_dynein_light: Axon 29.5 4.7E+02 0.01 28.4 10.8 65 846-916 123-187 (189)
182 cd09236 V_AnPalA_UmRIM20_like 29.5 1E+03 0.022 28.3 29.5 71 242-312 135-209 (353)
183 PF10392 COG5: Golgi transport 29.4 4.4E+02 0.0095 26.8 10.0 57 852-908 67-123 (132)
184 smart00787 Spc7 Spc7 kinetocho 29.4 1.7E+02 0.0037 34.3 7.9 65 820-884 202-266 (312)
185 KOG2180 Late Golgi protein sor 29.3 1.4E+03 0.031 29.9 22.7 72 444-525 230-310 (793)
186 PF08614 ATG16: Autophagy prot 29.3 3.4E+02 0.0074 29.3 9.7 48 825-872 126-173 (194)
187 PF06103 DUF948: Bacterial pro 29.2 3.9E+02 0.0084 25.1 9.0 43 825-867 22-64 (90)
188 PF04728 LPP: Lipoprotein leuc 29.1 2.5E+02 0.0055 25.0 6.9 31 830-860 4-34 (56)
189 KOG2264 Exostosin EXT1L [Signa 29.1 2.2E+02 0.0047 35.7 8.7 61 821-881 78-138 (907)
190 PF08614 ATG16: Autophagy prot 29.0 1E+02 0.0022 33.4 5.6 36 825-860 105-140 (194)
191 cd06409 PB1_MUG70 The MUG70 pr 29.0 1.3E+02 0.0028 28.8 5.6 34 18-51 5-38 (86)
192 PF00170 bZIP_1: bZIP transcri 29.0 1.3E+02 0.0028 26.7 5.3 36 834-869 24-59 (64)
193 PF04912 Dynamitin: Dynamitin 28.7 9.7E+02 0.021 28.8 14.3 140 259-423 213-368 (388)
194 PF07106 TBPIP: Tat binding pr 28.7 1.2E+02 0.0027 31.9 6.1 52 821-872 78-138 (169)
195 PF07889 DUF1664: Protein of u 28.5 3.3E+02 0.0072 28.0 8.7 39 234-272 38-78 (126)
196 PF12329 TMF_DNA_bd: TATA elem 28.5 4.2E+02 0.009 24.6 8.7 63 819-881 9-71 (74)
197 cd07652 F-BAR_Rgd1 The F-BAR ( 28.4 4.3E+02 0.0094 29.5 10.6 81 824-907 67-147 (234)
198 cd07593 BAR_MUG137_fungi The B 28.4 3.1E+02 0.0068 30.5 9.3 91 821-914 113-204 (215)
199 PF01017 STAT_alpha: STAT prot 28.3 6.5E+02 0.014 27.0 11.6 82 838-919 4-92 (182)
200 PF13881 Rad60-SLD_2: Ubiquiti 28.2 96 0.0021 30.9 4.8 57 22-78 11-75 (111)
201 PF04740 LXG: LXG domain of WX 28.2 7.6E+02 0.017 26.4 16.3 53 973-1027 152-204 (204)
202 PF12325 TMF_TATA_bd: TATA ele 28.2 3.7E+02 0.008 27.3 9.0 57 818-874 12-68 (120)
203 cd00890 Prefoldin Prefoldin is 28.1 1.3E+02 0.0029 29.6 6.0 126 845-999 1-127 (129)
204 PRK11546 zraP zinc resistance 27.9 1.8E+02 0.0039 30.5 6.8 17 852-868 91-107 (143)
205 PRK10884 SH3 domain-containing 27.7 3.5E+02 0.0076 29.9 9.5 16 822-837 100-115 (206)
206 PRK06568 F0F1 ATP synthase sub 27.7 2.7E+02 0.0058 29.5 8.2 54 839-902 34-87 (154)
207 KOG1853 LIS1-interacting prote 27.5 9.8E+02 0.021 27.4 19.5 26 379-404 246-271 (333)
208 PRK04325 hypothetical protein; 27.4 1.8E+02 0.0038 27.0 6.0 49 835-883 8-56 (74)
209 PF04129 Vps52: Vps52 / Sac2 f 27.3 2.9E+02 0.0063 34.5 9.9 125 820-993 12-138 (508)
210 PF04977 DivIC: Septum formati 27.1 2E+02 0.0043 25.9 6.4 31 832-862 20-50 (80)
211 PF00170 bZIP_1: bZIP transcri 27.0 1.9E+02 0.0041 25.6 6.0 38 822-859 26-63 (64)
212 PF15584 Imm44: Immunity prote 26.7 24 0.00052 34.0 0.3 11 1046-1056 42-52 (94)
213 KOG4302 Microtubule-associated 26.2 1.6E+03 0.034 29.4 31.9 22 462-483 362-383 (660)
214 smart00338 BRLZ basic region l 26.1 1.6E+02 0.0036 26.0 5.5 34 834-867 24-57 (65)
215 KOG0810 SNARE protein Syntaxin 26.1 1.1E+03 0.024 27.6 20.6 59 266-326 193-251 (297)
216 KOG2391 Vacuolar sorting prote 26.1 2.5E+02 0.0054 33.2 8.2 71 817-887 209-283 (365)
217 cd07627 BAR_Vps5p The Bin/Amph 26.0 9.1E+02 0.02 26.5 23.6 49 360-409 85-133 (216)
218 PF12240 Angiomotin_C: Angiomo 25.7 5.1E+02 0.011 28.7 10.0 30 641-670 128-157 (205)
219 PRK09039 hypothetical protein; 25.7 1.2E+03 0.026 27.8 18.6 27 1013-1039 205-233 (343)
220 KOG0006 E3 ubiquitin-protein l 25.6 1.3E+02 0.0028 35.1 5.7 51 24-74 14-64 (446)
221 PF03962 Mnd1: Mnd1 family; I 25.5 1.3E+02 0.0028 32.7 5.6 19 927-945 150-168 (188)
222 PRK11578 macrolide transporter 25.4 5.3E+02 0.011 30.5 11.2 41 827-867 97-137 (370)
223 PRK13454 F0F1 ATP synthase sub 25.4 2.2E+02 0.0048 30.5 7.4 59 824-899 53-111 (181)
224 PF11932 DUF3450: Protein of u 25.0 1E+03 0.022 26.7 14.8 43 839-881 38-80 (251)
225 PRK10132 hypothetical protein; 24.8 2.9E+02 0.0064 27.5 7.5 23 838-860 7-29 (108)
226 PF05546 She9_MDM33: She9 / Md 24.6 1E+03 0.022 26.6 13.3 151 821-1010 8-207 (207)
227 PF04728 LPP: Lipoprotein leuc 24.5 3.9E+02 0.0085 23.8 7.2 28 837-864 4-31 (56)
228 COG0598 CorA Mg2+ and Co2+ tra 24.3 1.2E+03 0.025 27.3 15.8 130 354-490 149-279 (322)
229 KOG3973 Uncharacterized conser 24.2 1.1E+03 0.025 28.1 12.9 14 471-484 285-298 (465)
230 PF15456 Uds1: Up-regulated Du 24.2 3.7E+02 0.008 27.5 8.2 62 820-882 20-106 (124)
231 PF14538 Raptor_N: Raptor N-te 24.0 1.4E+02 0.003 31.4 5.4 50 32-91 70-121 (154)
232 PF09755 DUF2046: Uncharacteri 24.0 1.2E+03 0.027 27.4 20.7 24 950-973 220-243 (310)
233 PF00435 Spectrin: Spectrin re 23.9 5.2E+02 0.011 23.4 8.8 79 825-903 4-84 (105)
234 PRK00295 hypothetical protein; 23.7 2.7E+02 0.0059 25.4 6.5 47 836-882 5-51 (68)
235 PRK00286 xseA exodeoxyribonucl 23.6 1.3E+03 0.028 28.1 14.3 48 222-269 224-274 (438)
236 PF07889 DUF1664: Protein of u 23.5 2.9E+02 0.0063 28.4 7.3 19 852-870 91-109 (126)
237 smart00338 BRLZ basic region l 23.4 1.7E+02 0.0037 25.9 5.1 38 822-859 26-63 (65)
238 PLN03188 kinesin-12 family pro 23.3 1.9E+03 0.042 30.7 16.3 156 854-1021 1069-1252(1320)
239 PRK11637 AmiB activator; Provi 23.2 1.4E+03 0.03 27.7 27.2 14 261-274 81-94 (428)
240 cd00632 Prefoldin_beta Prefold 23.1 2.1E+02 0.0045 27.9 6.1 42 820-861 61-102 (105)
241 PF04124 Dor1: Dor1-like famil 23.0 1.3E+03 0.028 27.2 17.8 16 472-489 229-244 (338)
242 PRK01885 greB transcription el 22.7 1.4E+02 0.0031 31.4 5.2 28 643-670 48-75 (157)
243 PF13815 Dzip-like_N: Iguana/D 22.6 1.6E+02 0.0036 29.3 5.4 34 825-858 83-116 (118)
244 PF14728 PHTB1_C: PTHB1 C-term 22.6 1.4E+03 0.031 27.6 14.1 141 826-968 198-376 (377)
245 PRK00736 hypothetical protein; 22.6 2.4E+02 0.0053 25.7 5.9 48 835-882 4-51 (68)
246 KOG0980 Actin-binding protein 22.5 2E+03 0.043 29.3 22.8 45 178-222 412-456 (980)
247 KOG2728 Uncharacterized conser 22.5 1.6E+02 0.0034 33.6 5.5 55 37-91 16-87 (302)
248 PF06419 COG6: Conserved oligo 22.4 1.2E+03 0.027 29.8 14.3 30 952-985 188-217 (618)
249 PF06785 UPF0242: Uncharacteri 22.4 6.4E+02 0.014 30.0 10.4 82 821-902 70-158 (401)
250 KOG1029 Endocytic adaptor prot 22.4 1.9E+03 0.042 29.1 17.8 9 46-54 186-194 (1118)
251 KOG0996 Structural maintenance 21.9 2.3E+03 0.049 29.8 58.4 53 618-670 775-827 (1293)
252 PF05700 BCAS2: Breast carcino 21.9 4.5E+02 0.0098 29.1 9.1 73 821-893 142-218 (221)
253 PF09469 Cobl: Cordon-bleu ubi 21.8 1E+02 0.0022 29.0 3.3 44 42-89 2-48 (79)
254 PRK02119 hypothetical protein; 21.7 2.8E+02 0.0061 25.7 6.2 49 834-882 7-55 (73)
255 PRK13729 conjugal transfer pil 21.7 1.3E+02 0.0029 37.0 5.3 38 823-860 84-121 (475)
256 PF04111 APG6: Autophagy prote 21.7 9E+02 0.019 28.4 11.9 40 822-861 50-89 (314)
257 PF07111 HCR: Alpha helical co 21.6 4.9E+02 0.011 33.7 10.1 59 822-880 521-587 (739)
258 PF11594 Med28: Mediator compl 21.6 3.7E+02 0.0081 26.9 7.3 66 826-896 19-84 (106)
259 cd07665 BAR_SNX1 The Bin/Amphi 21.5 1.2E+03 0.026 26.3 20.7 39 163-201 30-68 (234)
260 PF06600 DUF1140: Protein of u 21.3 3.2E+02 0.0069 26.9 6.6 46 177-222 54-105 (107)
261 PF05739 SNARE: SNARE domain; 21.0 5.4E+02 0.012 22.1 8.4 49 833-881 1-49 (63)
262 PF08912 Rho_Binding: Rho Bind 21.0 3E+02 0.0066 25.5 6.1 34 827-860 1-34 (69)
263 TIGR01461 greB transcription e 21.0 1.9E+02 0.0041 30.5 5.6 28 643-670 46-73 (156)
264 PHA02887 EGF-like protein; Pro 20.9 39 0.00085 33.9 0.6 51 997-1047 11-66 (126)
265 PF08700 Vps51: Vps51/Vps67; 20.9 3.6E+02 0.0079 24.8 7.0 53 824-876 21-84 (87)
266 PF15003 HAUS2: HAUS augmin-li 20.9 2.5E+02 0.0055 32.3 6.9 24 861-884 87-110 (277)
267 KOG3493 Ubiquitin-like protein 20.8 49 0.0011 30.0 1.1 55 19-73 7-61 (73)
268 PF08172 CASP_C: CASP C termin 20.8 3.9E+02 0.0085 30.4 8.4 38 969-1006 82-119 (248)
269 cd00632 Prefoldin_beta Prefold 20.7 2.4E+02 0.0052 27.5 6.0 45 826-870 60-104 (105)
270 KOG0971 Microtubule-associated 20.7 2.2E+03 0.048 29.1 35.7 97 821-920 947-1051(1243)
271 KOG4514 Uncharacterized conser 20.7 1.1E+03 0.024 25.7 12.3 18 264-281 201-218 (222)
272 cd09237 V_ScBro1_like Protein- 20.6 1.4E+03 0.031 26.9 26.4 40 243-282 130-169 (356)
273 PRK10476 multidrug resistance 20.6 8.5E+02 0.018 28.4 11.6 13 1072-1084 276-288 (346)
274 PRK03947 prefoldin subunit alp 20.5 7.2E+02 0.016 25.2 9.7 125 840-1011 3-139 (140)
275 PF10473 CENP-F_leu_zip: Leuci 20.5 7.1E+02 0.015 26.0 9.5 66 840-905 7-72 (140)
276 PF12126 DUF3583: Protein of u 20.4 1.4E+03 0.031 26.8 13.9 103 362-469 16-124 (324)
277 PF08232 Striatin: Striatin fa 20.4 2.4E+02 0.0051 29.1 6.1 40 637-676 34-73 (134)
278 PF09748 Med10: Transcription 20.2 6.6E+02 0.014 25.6 9.2 43 237-279 68-115 (128)
No 1
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-37 Score=357.84 Aligned_cols=463 Identities=18% Similarity=0.236 Sum_probs=369.1
Q ss_pred cCCceeEecCC-CCCCHHHHHHHHHHHhCCCCCCEEEEecC-Ccccccccccccc-CCCCCceEEEEeccccCCCCCCCC
Q 001114 21 ENGHSFELDCN-ENSPVEAVMRFIESAAGINFNDQLVLCLD-MKLEPQKLLSAYR-LPSDDKEVFIFNKLRLQSNSPPPS 97 (1154)
Q Consensus 21 htG~~l~~d~~-~f~SVe~LK~~Ia~~t~IP~~~QILLtsg-Gkl~k~~~L~~Y~-l~~denEIFVFDRrll~~~~~~p~ 97 (1154)
++|+.++||+. ..+++.+||..|+...|+...++.+|..| .....++.|+.|+ +|++++|||+||+...-.+.++..
T Consensus 2 drGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnkem~lcde~~a~ 81 (1424)
T KOG4572|consen 2 DRGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNKEMGLCDENHAG 81 (1424)
T ss_pred CCCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEeehhhccccCCCCC
Confidence 68999999998 58899999999999999999999999865 5788999999998 778889999999988766655444
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCCCCChhh--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 98 PEQVDVLEVADPPPPALSQDPHPLDDAPDPAL--KALPSYERQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERAVE 175 (1154)
Q Consensus 98 ~e~l~ipe~~~pP~p~~s~~pspL~ds~dp~l--raL~sye~lfr~~l~~A~AL~~~a~~~~e~ce~Lv~Ei~vq~raL~ 175 (1154)
|.. ... -...+|+.+... -.+|+-...+.....+|..++..|......|.+|+++-+++++||.
T Consensus 82 pdt-Tyi-------------FqmedDae~kaeesL~mpa~fhivae~~elA~e~~eVaaelcqfCagLVhdehf~HkGWa 147 (1424)
T KOG4572|consen 82 PDT-TYI-------------FQMEDDAEDKAEESLKMPAPFHIVAELPELAKECREVAAELCQFCAGLVHDEHFLHKGWA 147 (1424)
T ss_pred CCc-eee-------------eecccHHHHHHHHHHcCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 431 100 012233322111 1244444456777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCccccc---------------------
Q 001114 176 VGRGNLEQYYRVINQNYND---FMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQT--------------------- 231 (1154)
Q Consensus 176 aAvaNLe~~~~~lek~f~e---f~~~~~qll~~~~~LL~~we~dLe~Lr~IpIhpaL~~--------------------- 231 (1154)
|.++||++.+....+..-. ....+.++.++...+|-+|...++.|++||+..+|.+
T Consensus 148 AiiaNLddcsnk~dKl~fKFe~i~Sk~~e~IEdidlkLlhlgdaVeqlakIpllecltrhsyreclgrldelPeeedsek 227 (1424)
T KOG4572|consen 148 AIIANLDDCSNKMDKLGFKFELIHSKSEELIEDIDLKLLHLGDAVEQLAKIPLLECLTRHSYRECLGRLDELPEEEDSEK 227 (1424)
T ss_pred HHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHhcchHhhhhhhhHHHhhcccccCchhhhcch
Confidence 9999999999887765544 4456677888889999999999999999998887754
Q ss_pred -------------cc----------------------------------------------------------ccccccc
Q 001114 232 -------------AT----------------------------------------------------------CKCLLDF 240 (1154)
Q Consensus 232 -------------e~----------------------------------------------------------~~TL~Df 240 (1154)
.. ..+|.||
T Consensus 228 AelkrSTel~inPD~~rttneslltsfpksvehvspdtadaesgkeirescqstvhqqdettidtkdgdlpffn~sLfD~ 307 (1424)
T KOG4572|consen 228 AELKRSTELPINPDEKRTTNESLLTSFPKSVEHVSPDTADAESGKEIRESCQSTVHQQDETTIDTKDGDLPFFNCSLFDF 307 (1424)
T ss_pred HhhccccccCCCCCCccccchhhhhcCcccccccCCccccchhhhHHHHHhhhhhhhcccccccccCCCcccccchHHHH
Confidence 00 2789999
Q ss_pred cCh----hHHHHHHHHHHHHHHHHHHHHHH-----HHH--------HHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 001114 241 VKE----EHLRKSAETCSSSHRQFENKVSQ-----FKQ--------IFDDVKRRVEELLNTRASLPIKNLEMMIKEHQRF 303 (1154)
Q Consensus 241 Vd~----e~Lrk~ae~C~~s~~~f~~Kv~~-----L~~--------~i~~Ik~~Vd~L~~~~~~~sl~~Le~~l~e~~~l 303 (1154)
|.. .++....+.|-...++++.++.. +.+ .+..+++.-+. .+.|+.++..+.++
T Consensus 308 IamaD~~adldgL~~kcfdkirqLd~qia~pfiaecqqt~akldNQemkafKGiedR---------f~aLd~miaSC~rl 378 (1424)
T KOG4572|consen 308 IAMADPEADLDGLPDKCFDKIRQLDEQIAIPFIAECQQTHAKLDNQEMKAFKGIEDR---------FSALDFMIASCERL 378 (1424)
T ss_pred HHhcCCccchhhhhHHHHHHHHhhchhhhhHHHHHHHHHHHhhcchhhHhhhcHHHH---------HHHHHHHHHHHHHH
Confidence 974 45666666666655555544322 111 22233333333 34788999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhccccccccCCCCccccccccCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 304 INEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPRMQACDRSISKLLDFCQDKKNEMN 383 (1154)
Q Consensus 304 i~Eq~siaqsL~kD~e~V~kL~dd~~~~~lssS~~s~davs~Ls~ma~~Htk~lLPsL~~~~~eL~d~l~~~~~~KNeL~ 383 (1154)
+++++.+++.+..++-..-++.| .+.|++++.+|.+.++ .|+++..++.++.+.|.++|.++.
T Consensus 379 vnEqKeLahgflAn~keaekikD----------------an~LPdic~eHan~ll-iifeN~refldikqkcdqaKQEia 441 (1424)
T KOG4572|consen 379 VNEQKELAHGFLANIKEAEKIKD----------------ANKLPDICEEHANCLL-IIFENFREFLDIKQKCDQAKQEIA 441 (1424)
T ss_pred HHHHHHHHHHHHHhhhhcccccc----------------cccCChHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999988877766654 4689999999998776 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHhhhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 384 VFVHNYMQKITYVSYV-IKDAKLQFPVFREAMVRQDDIFADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERL 462 (1154)
Q Consensus 384 ~~~~~~Lr~IS~IQs~-I~evk~~L~~L~e~L~rq~d~F~~L~~V~~LP~aYga~LiEvVRRRew~~k~~~~as~LAEeL 462 (1154)
++++.+|.|..++... ..+..+.++.|.-.+.....+++.+.++.+.|.+|...|+|+||||-|...|..|++.+...-
T Consensus 442 kNLhtRlk~ccfqml~adqdgek~~allel~ieale~hmdiieairdaP~lYclaVsEiVRRklfike~eEWaga~skd~ 521 (1424)
T KOG4572|consen 442 KNLHTRLKGCCFQMLDADQDGEKDIALLELKIEALEIHMDIIEAIRDAPILYCLAVSEIVRRKLFIKELEEWAGAHSKDC 521 (1424)
T ss_pred HHHHhhhhhhheeehhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999998886664 444445556666555556678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhhhccCCCCCCCCccccccC--CCCCCCccCCHHHHH---hhhh
Q 001114 463 ATKREVEVRRREEFLKANSVYIPRDILGSMGLYDTPNQCDVNIA--PSDTNLLDIDISDLE---VYAP 525 (1154)
Q Consensus 463 a~lreeE~kRRekf~K~~G~~LP~dL~~~~GL~d~PP~~evnl~--~~D~~LP~I~r~Dle---~yi~ 525 (1154)
+.|.+.|.+.|+.|-+.|..+|++.+| +|++|+.|.+-++.+ .||+.||+|..+||. .++|
T Consensus 522 aqf~eaEekkREqfGk~fkKhFLha~f--f~gfDn~P~~fckak~eKfDcdLPdIa~edik~Lqd~cP 587 (1424)
T KOG4572|consen 522 AQFSEAEEKKREQFGKKFKKHFLHALF--FGGFDNLPEFFCKAKLEKFDCDLPDIAKEDIKDLQDACP 587 (1424)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhh--hcccccCCHHHhcCChhhcCCCCchhhHHHHHHHHHhCh
Confidence 999999999999999999999999998 477776556666665 499999999999875 4455
No 2
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=99.97 E-value=8.3e-31 Score=260.21 Aligned_cols=121 Identities=35% Similarity=0.615 Sum_probs=110.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccceEEeeccCCcc-----hhhhccCCCc
Q 001114 977 ELLDKNRKVELAHEQLKKELEEKKELVKTLYTKHQLEKQANKEKISFSRLEVHEIAAFVLNSAGH-----YEAINRNCSN 1051 (1154)
Q Consensus 977 ~~~~r~~~~e~~~~~~~ke~~~k~~~~~~l~~k~~~~~~~~~~~i~~~~f~~~~~~~f~~~~~~~-----~~a~n~~~~~ 1051 (1154)
++.+|++++|.++++|+||++.|++.++++. ++||||++|+|||||+|+||+.|+ |+|||.||||
T Consensus 4 ~v~~r~~d~e~lakkl~Ke~k~~~~~~~~~~----------~~kIs~~~f~~GDlvLflpt~~~~~~~~~~~af~~~~~~ 73 (129)
T PF10377_consen 4 AVIKRFKDVEELAKKLQKENKSKRSELKKLQ----------KEKISFRNFQVGDLVLFLPTRNHNNKKQPWAAFNVGCPH 73 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh----------cCcEEEecCCCCCEEEEEecCCCCccccceEEeeCCCce
Confidence 8999999999999999999999998766443 459999999999999999999988 9999999999
Q ss_pred ccccchhhhhhccCCCCCCCcEEEEEEEEeeecccCCCCCCCCCCCCCCCccccccccCCcccccccCCCCCCCCCCCCC
Q 001114 1052 YYLSAESVALFTDNLPRRPSYIVGQIVHIERQTAKPLPPAATRPGQGKADQVDRLTFDTGTDRLALNSGSTTSNPFGLPI 1131 (1154)
Q Consensus 1052 y~l~~e~~~~~~~~~~~~~~~i~g~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~l~~ 1131 (1154)
|||+++|+++ +..++|+||||||++||+++|+ .+.+.|||+||.
T Consensus 74 YFL~~~s~~~---~~~~~~~w~vgrI~~~e~~~v~---------------------------------~~~~~Npy~Lp~ 117 (129)
T PF10377_consen 74 YFLHEDSIAA---NELKRREWIVGRIVSIEECQVK---------------------------------DDKDSNPYNLPV 117 (129)
T ss_pred EEEecccchh---ccCCCCCEEEEEEEEEEEEEec---------------------------------cCCCCCCCcCCC
Confidence 9999999987 4567899999999999999996 013899999999
Q ss_pred ccEEEEEEEeec
Q 001114 1132 GCEYFIVTVAML 1143 (1154)
Q Consensus 1132 g~~~~~v~v~~~ 1143 (1154)
|++||+|+|+|.
T Consensus 118 Gt~~y~V~v~~~ 129 (129)
T PF10377_consen 118 GTKFYRVTVEPM 129 (129)
T ss_pred CCEEEEEEEEeC
Confidence 999999999974
No 3
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=99.94 E-value=1.7e-23 Score=245.06 Aligned_cols=337 Identities=20% Similarity=0.275 Sum_probs=248.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC
Q 001114 145 RGHAIYIRTQAKIEMCERLLREQKVQERAVEVGRGNLEQ-YYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSV 223 (1154)
Q Consensus 145 ~A~AL~~~a~~~~e~ce~Lv~Ei~vq~raL~aAvaNLe~-~~~~lek~f~ef~~~~~qll~~~~~LL~~we~dLe~Lr~I 223 (1154)
.|+.+...++..++....+..++.++.+|+.-.+..|.. .+..+...++.....|..+....+.....++..|+.|+++
T Consensus 20 ~An~~~~~ar~~l~~~~~~~~k~~fl~~~l~~Q~~~L~~~~~~~~~~~~~~~~~~f~~l~~~ld~~~~~L~~~l~~Lr~t 99 (412)
T PF04108_consen 20 EANEILTSARQSLEESVPLSAKTGFLRRGLKQQLKLLYKKVRSSLLIVYEWGQRDFKDLVKELDPADARLEQTLDMLRNT 99 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 388888999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCccccc--ccccccccccChhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhh--------
Q 001114 224 KLHPSLQT--ATCKCLLDFVKEEHL-------RKSAETCSSSHRQFENKVSQFKQIFDDVKRRV--EELLNT-------- 284 (1154)
Q Consensus 224 pIhpaL~~--e~~~TL~DfVd~e~L-------rk~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~V--d~L~~~-------- 284 (1154)
+++|.|++ ++.+||+||||.+.+ +...+.|..++..|++-+.+++..+..++..+ ..+...
T Consensus 100 ~v~~~~~~~~~~~ktL~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 179 (412)
T PF04108_consen 100 KVPPFFRPPGEEPKTLYDFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQLINKRLKDYELLAPFQS 179 (412)
T ss_pred cCCccccCCCCCCCcHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhcccccc
Confidence 99999986 467999999998644 55588999999999999999988888777666 111110
Q ss_pred -c---cCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhccccccccCCCCccccccccCchhhhhhccch
Q 001114 285 -R---ASL--PIKNLEMMIKEHQRFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHL 358 (1154)
Q Consensus 285 -~---~~~--sl~~Le~~l~e~~~li~Eq~siaqsL~kD~e~V~kL~dd~~~~~lssS~~s~davs~Ls~ma~~Htk~lL 358 (1154)
. +.. +.......+.+...+-+++.++.++|.++|+-....+....+ .++...+..+++
T Consensus 180 ~~~~~~~~~~s~~~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg----------------~~~~~~e~~e~l 243 (412)
T PF04108_consen 180 SLGSSPSSSSSNPLMSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEG----------------EPMSEEERQEML 243 (412)
T ss_pred ccCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------CCCChHHHHHHH
Confidence 0 000 123344455566666789999999999999776555542111 122223333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH-------HHHHHhhhhhHH
Q 001114 359 PRMQACDRSISKLLDFCQDKKN---------------------EMNVFVHNYMQKITYVSY-------VIKDAKLQFPVF 410 (1154)
Q Consensus 359 PsL~~~~~eL~d~l~~~~~~KN---------------------eL~~~~~~~Lr~IS~IQs-------~I~evk~~L~~L 410 (1154)
..|.+.+.++.+++..+...-. .+...+...+..+..++. .+.++.+.|..+
T Consensus 244 ~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~ 323 (412)
T PF04108_consen 244 EVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEE 323 (412)
T ss_pred HHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333111 111111112222222222 233333444444
Q ss_pred HHHHHhhhhHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhh
Q 001114 411 REAMVRQDDIFADLKLV-RGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKANSVYIPRDIL 489 (1154)
Q Consensus 411 ~e~L~rq~d~F~~L~~V-~~LP~aYga~LiEvVRRRew~~k~~~~as~LAEeLa~lreeE~kRRekf~K~~G~~LP~dL~ 489 (1154)
++.+....+.+..|..+ .+++.+|+++|+|+.|||.|.++|++.+..++++|++++++|.++|+.|++++|+|||.++|
T Consensus 324 ~~~i~~~~~~l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l~eeE~~~Re~F~~e~GdyLP~diw 403 (412)
T PF04108_consen 324 KESIQAYIDELEQLCEFYEGFLSAYDSLLLEVERRRAVRDKMKKIIREANEELDKLREEEQRRREAFLKEYGDYLPEDIW 403 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCChhhC
Confidence 44444444566777666 56999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 001114 490 GSMGLYDTPN 499 (1154)
Q Consensus 490 ~~~GL~d~PP 499 (1154)
|||.+.|.
T Consensus 404 --pg~~d~p~ 411 (412)
T PF04108_consen 404 --PGMIDPPS 411 (412)
T ss_pred --CCccCCCC
Confidence 69988884
No 4
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=97.53 E-value=0.23 Score=61.90 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=100.3
Q ss_pred CeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEeccccCCC
Q 001114 13 GKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLRLQSN 92 (1154)
Q Consensus 13 ~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRrll~~~ 92 (1154)
..++||...++.++.+-+.+-.+++.|+.-|...||||...|+||..+|.......-.+.. .+.+.++|||...-....
T Consensus 314 ~vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~~~Q~~~-dg~~~~l~l~~~~~~~v~ 392 (732)
T KOG4250|consen 314 KVVHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHLEDSAQCIP-DGLDSPLYLVSDQDKNVD 392 (732)
T ss_pred heeEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccccCcccccCC-CCCCCceEEEecCCCcch
Confidence 4689999999999999999999999999999999999999999998876543322111111 135789999864433221
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCCCCCCChhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 93 SPPPSPEQVDVLEVADPPPPALSQDPHPLDDAPDPALKALPSYERQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQER 172 (1154)
Q Consensus 93 ~~~p~~e~l~ipe~~~pP~p~~s~~pspL~ds~dp~lraL~sye~lfr~~l~~A~AL~~~a~~~~e~ce~Lv~Ei~vq~r 172 (1154)
.. .++....|+.+ |.-.-+ ++ +..+. +....-|+. ....+..+......+.+
T Consensus 393 ~~-------~~~~r~~p~~~-----~~i~~d-~k-----~~~ak--i~~~~vg~~--------~~~~i~~ll~~~~r~~q 444 (732)
T KOG4250|consen 393 ER-------KILKRSLPKVV-----PYIDQD-KK-----ASLAK--IQLRKVGLE--------ALREIDTLLEDQERLFQ 444 (732)
T ss_pred hh-------cccccCCCCCc-----cchhcc-ch-----hhhhh--hhhhHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 11 11111122211 111111 11 11111 111112333 33455667777788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 173 AVEVGRGNLEQYYRVINQNYNDFMKRYSQQ 202 (1154)
Q Consensus 173 aL~aAvaNLe~~~~~lek~f~ef~~~~~ql 202 (1154)
++.+++.+|-.....+.+.-..+.......
T Consensus 445 g~r~~~~~L~~~~s~~~k~~~t~~~~~~~~ 474 (732)
T KOG4250|consen 445 GLRAVMELLVRTNSELLKVKTTSRSALQQL 474 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887766665554443
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=97.02 E-value=0.0014 Score=59.36 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=57.4
Q ss_pred EEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 16 LVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 16 ~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
+|++ ..+|..+.+++....+|.+||+-|+..+|||+++|-|+..|-.+....+|+.|++. +...|+|-
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~-~~~~l~l~ 70 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIG-PNAKLNLV 70 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCC-CCCEEEEE
Confidence 3444 46899999999999999999999999999999999999988788888999999975 44555554
No 6
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=97.01 E-value=0.0015 Score=57.90 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=57.7
Q ss_pred cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 21 ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 21 htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
-+|..+.+++....+|.+||..|+..++||+++|.|+..|-.+....+|.+|++. +...|+|+=|
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~-~~~~I~l~~k 67 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIK-DGSTIHLVIK 67 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTS-TTEEEEEEES
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCC-CCCEEEEEEe
Confidence 4799999999999999999999999999999999999987778889999999986 4457877654
No 7
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=96.98 E-value=0.0018 Score=57.76 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=57.0
Q ss_pred EEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEE
Q 001114 16 LVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFI 83 (1154)
Q Consensus 16 ~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFV 83 (1154)
+|.+-+.|..+.+++....+|.+||+.|+..+|||+++|-|+..|..+....+|..|++. +...|+|
T Consensus 2 ~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~-~g~~l~v 68 (71)
T cd01812 2 RVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVK-DGSKVML 68 (71)
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCC-CCCEEEE
Confidence 466666799999999999999999999999999999999999887777778899999875 4556665
No 8
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=96.89 E-value=0.0018 Score=58.47 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=56.7
Q ss_pred EecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEE
Q 001114 19 ISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFI 83 (1154)
Q Consensus 19 ~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFV 83 (1154)
...+|.++.+++.+..||.+||+.|+...|||+.+|-|+.+|..|.....+..|++. ....|+|
T Consensus 4 k~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~-~~~tv~~ 67 (70)
T cd01794 4 RLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQ-KDYVVQV 67 (70)
T ss_pred EcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCC-CCCEEEE
Confidence 456899999999999999999999999999999999999877778888999999876 6667766
No 9
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=96.87 E-value=0.0028 Score=57.50 Aligned_cols=64 Identities=16% Similarity=0.297 Sum_probs=54.6
Q ss_pred ecCCceeEecCCCCCCHHHHHHHHHHHhCC--CCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 20 SENGHSFELDCNENSPVEAVMRFIESAAGI--NFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 20 AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~I--P~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
..+|..+.+++....+|.+||+.|+..+|| |+++|.|+..|..+....+|..|++. +...|+|.
T Consensus 7 ~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~-~~~~i~~~ 72 (77)
T cd01805 7 TLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKID-EKDFVVVM 72 (77)
T ss_pred eCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCC-CCCEEEEE
Confidence 478999999999999999999999999999 99999999877777777899999886 34456554
No 10
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=96.75 E-value=0.0032 Score=57.13 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=56.6
Q ss_pred EEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEe
Q 001114 16 LVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (1154)
Q Consensus 16 ~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFD 85 (1154)
+|++= ++.++.+++.+..+|.+||.-|+..+|||+++|.|+.+|-.+....+|+.|++. +...|+|-=
T Consensus 2 qi~vk-~~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~-~~~tl~l~~ 69 (74)
T cd01793 2 QLFVR-AQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVE-ELCTLEVAG 69 (74)
T ss_pred EEEEE-CCCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCC-CCCEEEEEE
Confidence 45543 467888888899999999999999999999999999987778888999999875 566776653
No 11
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=96.72 E-value=0.0039 Score=55.83 Aligned_cols=66 Identities=11% Similarity=0.260 Sum_probs=57.0
Q ss_pred EEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 18 HISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 18 ~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
+....|+.+.+++.+..+|.+||..|+..+|||+++|.|+.+|..+....+|..|++. +...|+|=
T Consensus 3 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~-~~stl~l~ 68 (70)
T cd01798 3 VRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG-QQSILHAV 68 (70)
T ss_pred EEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCC-CCCEEEEE
Confidence 3566899999999999999999999999999999999999887788888999999875 55666653
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=96.72 E-value=0.0058 Score=55.79 Aligned_cols=68 Identities=13% Similarity=0.265 Sum_probs=56.6
Q ss_pred EEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 16 LVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 16 ~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
.|.+ ..+|..+.+++.+-.+|.+||..|+..+|||++.|=|.-+|..+....+|..|++. +...|++|
T Consensus 3 ~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~-~~stv~l~ 71 (73)
T cd01791 3 EVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIH-DGMNLELY 71 (73)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCC-CCCEEEEE
Confidence 3444 44699999999999999999999999999999999998775455556789999875 67888888
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=96.71 E-value=0.0048 Score=55.53 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=56.9
Q ss_pred ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 20 SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 20 AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
..+|+.+.+.+....+|.+||+.|+..+|||+++|-|+..|..+....+|.+|++. +...|+|.=+
T Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~-~g~~i~l~~~ 72 (76)
T cd01806 7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLE-GGSVLHLVLA 72 (76)
T ss_pred eCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCC-CCCEEEEEEE
Confidence 55799999988899999999999999999999999999877777788999999875 5567777643
No 14
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=96.66 E-value=0.0039 Score=56.28 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=49.9
Q ss_pred EEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccc-cccccccCC
Q 001114 16 LVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQ-KLLSAYRLP 75 (1154)
Q Consensus 16 ~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~-~~L~~Y~l~ 75 (1154)
+|....+|..+.+++....+|.+||..|+..+|||+++|.|+..|..+... ..|..|++.
T Consensus 2 ~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~ 62 (71)
T cd01796 2 TVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62 (71)
T ss_pred EEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCC
Confidence 455555899999999999999999999999999999999998865555444 578889865
No 15
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=96.64 E-value=0.0032 Score=57.55 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=55.9
Q ss_pred cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 21 ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 21 htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
-+|+++.+++....+|.+||.-|+..+|||++.|-|+..|..+....+|.+|++. +...|.|.=|
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~-~g~~l~v~~~ 69 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLA-NGTIIHLQLK 69 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCC-CCCEEEEEEe
Confidence 3799999999999999999999999999999999999877777788899999875 5566766543
No 16
>PTZ00044 ubiquitin; Provisional
Probab=96.58 E-value=0.0049 Score=55.86 Aligned_cols=68 Identities=13% Similarity=0.271 Sum_probs=55.8
Q ss_pred EEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 16 LVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 16 ~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
+||+ ..+|+++.+......+|.+||.-|+..+|||+++|-|+.+|..+.....|.+|++. +...|-|.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~-~~~~i~l~ 70 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVV-PGSTIHMV 70 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCC-CCCEEEEE
Confidence 3444 56899999999999999999999999999999999999877777778899999875 33444443
No 17
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=96.56 E-value=0.0055 Score=54.55 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=53.1
Q ss_pred ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEE
Q 001114 20 SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFI 83 (1154)
Q Consensus 20 AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFV 83 (1154)
..+|..+.+.+....+|.+||..|+..+|||++.|-|+..|..+....+|..|++. +...|+|
T Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~-~~~~l~l 69 (72)
T cd01809 7 TLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVE-DGHTIHL 69 (72)
T ss_pred eCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCC-CCCEEEE
Confidence 45688888988888999999999999999999999999876667778899999875 4555554
No 18
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=96.52 E-value=0.0063 Score=54.79 Aligned_cols=66 Identities=20% Similarity=0.362 Sum_probs=55.8
Q ss_pred ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 20 SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 20 AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
..+|+.+.+++....+|.+||..|+..+|||+++|-|..+|..+.....|..|++. +...|+|.=|
T Consensus 7 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~-~~~~i~l~~~ 72 (76)
T cd01803 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 72 (76)
T ss_pred cCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCC-CCCEEEEEEE
Confidence 45799999999999999999999999999999999999877677778899999875 4566666543
No 19
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.51 E-value=0.0063 Score=55.21 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=58.5
Q ss_pred EEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 18 HISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 18 ~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
+.-..|.++.+++....+|.+||.-|+...|||+++|-|+..|..|....+|..|++. +...|++.-|
T Consensus 3 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~-~~~tl~l~~~ 70 (74)
T cd01810 3 VRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK-PGCTVFMNLR 70 (74)
T ss_pred EECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCC-CCCEEEEEEE
Confidence 3567899999988889999999999999999999999999877778888999999875 5667877644
No 20
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=96.50 E-value=0.0074 Score=58.71 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=61.5
Q ss_pred cCCeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 11 HEGKLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 11 ~~~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
....|+|++-. +|+++.+++....+|.+||+.|+...|||+++|-|..+|..+.....|+.|++. +...|+|-
T Consensus 24 ~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~-~~stL~l~ 97 (103)
T cd01802 24 FYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNIS-EGCTLKLV 97 (103)
T ss_pred cCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCC-CCCEEEEE
Confidence 34468888754 799999999999999999999999999999999999877778888999999864 55566664
No 21
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=96.45 E-value=0.0054 Score=56.27 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=51.8
Q ss_pred CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccc-cccccccccCCCCCceEEEE
Q 001114 22 NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLE-PQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 22 tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~-k~~~L~~Y~l~~denEIFVF 84 (1154)
.|.++.++..+..+|.+||..|+..+|||+++|.| ..|..+. ...+|+.|+..++..-+|||
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 45667777788899999999999999999999999 6666665 55899999987666778887
No 22
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=96.31 E-value=0.0075 Score=52.01 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=50.1
Q ss_pred EEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCC
Q 001114 16 LVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLP 75 (1154)
Q Consensus 16 ~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~ 75 (1154)
+|++-..|..+.+++..-.+|.+||..|+..+|||++.|-|+..|..+....+|..|++.
T Consensus 2 ~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~ 61 (64)
T smart00213 2 ELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQ 61 (64)
T ss_pred EEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCc
Confidence 455555556778888888899999999999999999999999877667777888888865
No 23
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=96.25 E-value=0.011 Score=54.12 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=52.2
Q ss_pred EEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEe---cCCccccccccccccCC
Q 001114 16 LVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLC---LDMKLEPQKLLSAYRLP 75 (1154)
Q Consensus 16 ~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLt---sgGkl~k~~~L~~Y~l~ 75 (1154)
.|-+-+.|..+.+++..-.++.+||+.|+..+|||+++|=||. .|.-+.....|..|++.
T Consensus 2 ~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~ 64 (74)
T cd01813 2 PVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLK 64 (74)
T ss_pred EEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCC
Confidence 5777899999999999999999999999999999999999996 34445577899999765
No 24
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=96.05 E-value=0.017 Score=50.40 Aligned_cols=63 Identities=22% Similarity=0.372 Sum_probs=53.8
Q ss_pred CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEe
Q 001114 22 NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (1154)
Q Consensus 22 tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFD 85 (1154)
+|..+.+.+....++.+||..|++.+|+|++.|.|+..|..+....+|..|+.. +...|+|.+
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~-~~~~i~v~~ 68 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQ-DGSTLHLVL 68 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCC-CCCEEEEEE
Confidence 689998988889999999999999999999999998866667777889888875 556787765
No 25
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.02 E-value=6.5 Score=49.23 Aligned_cols=121 Identities=10% Similarity=0.075 Sum_probs=86.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-----------------Hhhhh
Q 001114 357 HLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVFREAM-----------------VRQDD 419 (1154)
Q Consensus 357 lLPsL~~~~~eL~d~l~~~~~~KNeL~~~~~~~Lr~IS~IQs~I~evk~~L~~L~e~L-----------------~rq~d 419 (1154)
.+..+.+.-..||+.++.=..+|+....+.-.....|..+......+...+..++... ....+
T Consensus 279 ~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~ 358 (560)
T PF06160_consen 279 ENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEK 358 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 3455777777888888888888888888888877777777777776666555554321 11112
Q ss_pred HHH-HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 420 IFA-DLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFL 477 (1154)
Q Consensus 420 ~F~-~L~~V~~LP~aYga~LiEvVRRRew~~k~~~~as~LAEeLa~lreeE~kRRekf~ 477 (1154)
.|. ....+..-..+|.....+...=.+-...+...-..+.+.++.++.+|...|++-.
T Consensus 359 ~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~ 417 (560)
T PF06160_consen 359 RYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQ 417 (560)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2333445557888888887777777778888899999999999999999998743
No 26
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=95.91 E-value=0.026 Score=51.96 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=54.2
Q ss_pred EEEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 15 LLVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 15 L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
|.|++ ..+|..+.+++....||.+||..|++.+++|++.|-|..+|..+... .|..|++. +...|||.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~-~~~~i~l~ 70 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLG-DGSKLTLV 70 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCC-CCCEEEEE
Confidence 34444 44699999988889999999999999999999999888765445444 89999875 56677775
No 27
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=95.90 E-value=0.019 Score=52.95 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=53.0
Q ss_pred ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEE--EecCCccccccccccccCCCCCceEEEEec
Q 001114 20 SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLV--LCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 20 AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QIL--LtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
..+|+.+.+++....+|.+||..|+..+|||+++|-| ..+|..+....+|..|++. +...|+|.=|
T Consensus 9 ~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~-~gs~l~l~~~ 76 (80)
T cd01792 9 MLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLG-PGSTVLLVVQ 76 (80)
T ss_pred eCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCC-CCCEEEEEEE
Confidence 5679999999888999999999999999999999998 4434445556789999875 5566776543
No 28
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=95.88 E-value=0.022 Score=52.61 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=53.7
Q ss_pred ecCCce-eEec-CCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 20 SENGHS-FELD-CNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 20 AhtG~~-l~~d-~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
..+|.. +.++ .....+|.+||..|+..+|||+++|-|+.+|-.+....+|..|++. +..-|+|.
T Consensus 7 ~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~-~~~~i~l~ 72 (78)
T cd01797 7 TMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVG-LNDIIQLL 72 (78)
T ss_pred cCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCC-CCCEEEEE
Confidence 567886 6785 6788999999999999999999999999977778888999999876 55666664
No 29
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.46 E-value=9.4 Score=47.93 Aligned_cols=119 Identities=12% Similarity=0.052 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-----------------Hhhhh
Q 001114 357 HLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVFREAM-----------------VRQDD 419 (1154)
Q Consensus 357 lLPsL~~~~~eL~d~l~~~~~~KNeL~~~~~~~Lr~IS~IQs~I~evk~~L~~L~e~L-----------------~rq~d 419 (1154)
.+..+.+.-..||+.++.-..+|+..-.+.-..-+.|..++.....+...+..+++.. .....
T Consensus 283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~ 362 (569)
T PRK04778 283 KNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEK 362 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHH
Confidence 3456677777788888888888888888777777777777777777776666665531 11112
Q ss_pred HHH-HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 420 IFA-DLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREE 475 (1154)
Q Consensus 420 ~F~-~L~~V~~LP~aYga~LiEvVRRRew~~k~~~~as~LAEeLa~lreeE~kRRek 475 (1154)
.|. ....+..--..|..+..+.---.+=...+...-..+.+.+..++..|...|++
T Consensus 363 ~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~k 419 (569)
T PRK04778 363 QYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREK 419 (569)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 33344333344877777777667777778888889999999999999998876
No 30
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=94.72 E-value=0.069 Score=48.03 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=50.4
Q ss_pred EecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEE
Q 001114 19 ISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFI 83 (1154)
Q Consensus 19 ~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFV 83 (1154)
...+|. ..+++....+|.+||..|++.+|||+++|=|..+|..+....+|..|++. +...|+|
T Consensus 6 k~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~-~~stl~l 68 (71)
T cd01808 6 KTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIK-DGLTVHL 68 (71)
T ss_pred EcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCC-CCCEEEE
Confidence 345776 47777788899999999999999999999888766667777899999875 4555665
No 31
>PRK11637 AmiB activator; Provisional
Probab=93.63 E-value=3.6 Score=49.60 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~ 872 (1154)
...+.+++..+.++.+.+.+++.+++.+.+++..|.++|+.++..|++.+..
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~ 97 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNT 97 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555544444
No 32
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.48 E-value=1.4 Score=57.52 Aligned_cols=183 Identities=24% Similarity=0.264 Sum_probs=116.5
Q ss_pred CCchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhH
Q 001114 817 PKVSSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADR 896 (1154)
Q Consensus 817 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~ 896 (1154)
.+.....+.+|..+|+.+.+++.++.+++--....-.-|+++++.+++.|++....|+-++--+. .++..+...++
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~----~~~~~l~~~e~ 518 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQ----QAKATLKEEEE 518 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 44578889999999999999999999998777777788999999999999998888766665555 33333444444
Q ss_pred hHHHHHH---------------HHHhhhhhhhhhhhhcc--ccccCC--cccchhhhHH----HHHHhhcccCCCCCCcC
Q 001114 897 RASEYSA---------------LRASAVKLRGLFERLRS--CVFASE--GAGGFADSLR----TLAQSLANSISDNEDDG 953 (1154)
Q Consensus 897 ~~~~~~~---------------l~~~~~r~~gl~~~~~~--~~~~p~--~~~~~~~~l~----~~~~~l~~~~~~~~~~~ 953 (1154)
.+..+-. |+.|...|.||++|+.. -+..+- ..++|--.|. .+...++.+.++
T Consensus 519 ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~----- 593 (1041)
T KOG0243|consen 519 IISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQ----- 593 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhh-----
Confidence 4444433 67777999999999987 345554 2244444433 343444432221
Q ss_pred hHHHHHHHHHhhhhhhhhh--------------hcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 954 TAEFRKCIRVLADRVAFLS--------------RHREELLDKNRKVELAHEQLKKELEEKKELVKTLYTKH 1010 (1154)
Q Consensus 954 ~~~f~~~i~~l~d~v~fl~--------------~~~~~~~~r~~~~e~~~~~~~ke~~~k~~~~~~l~~k~ 1010 (1154)
.|..--..++....|++ .+|.-+.+=+.-++-+.+-+.|+.+..-+.|.+-..++
T Consensus 594 --~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~~~r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~ 662 (1041)
T KOG0243|consen 594 --QISQLTTMLAQMESFLSAKSKATEIMKTKISKDRDILSEVLESLQQLQEVLKKDSESCLEVINSSITSS 662 (1041)
T ss_pred --HHHHHHHHHhhhHHHhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhh
Confidence 22222222222222322 34445555566666677777777777777776655544
No 33
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=92.81 E-value=0.08 Score=54.63 Aligned_cols=75 Identities=20% Similarity=0.369 Sum_probs=65.2
Q ss_pred EEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEeccccCC
Q 001114 16 LVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLRLQS 91 (1154)
Q Consensus 16 ~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRrll~~ 91 (1154)
.||+ .-+|..+.++.....+++.+|.-|+...|||+++|=|..+|.+|..-..++.|++. .+.+|+|+-+..-..
T Consensus 2 ~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iq-kestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 2 QIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRLRGGA 77 (156)
T ss_pred ccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCcccccccc-ccceEEEEEEecCCc
Confidence 3444 55788899999999999999999999999999999999999999999999999976 788999998844433
No 34
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=92.72 E-value=0.51 Score=44.39 Aligned_cols=74 Identities=11% Similarity=0.253 Sum_probs=62.6
Q ss_pred CCeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 12 ~~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
...+.|++- .+|..+.+.+...+++..|+..++...|||+++|-++..|-++....++..|++- +...|.|+=+
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~-d~d~I~v~l~ 83 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGME-DGDEIEVMLE 83 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCC-CCCEEEEEEe
Confidence 445666664 3599999999999999999999999999999999999988788889999999875 6678888744
No 35
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=92.56 E-value=0.051 Score=52.53 Aligned_cols=68 Identities=16% Similarity=0.337 Sum_probs=57.6
Q ss_pred EEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 16 LVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 16 ~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
.+..--+|.++.+.+.+..+|+.+|.-|.+..|||++.|.|.-.+-.+....++..|++. .+..|-+|
T Consensus 3 ~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~-~~~Tl~~~ 70 (128)
T KOG0003|consen 3 IFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-KESTLHLV 70 (128)
T ss_pred EEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCcc-chhhhhhh
Confidence 455678999999999999999999999999999999999999888888888999999876 33333333
No 36
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.16 E-value=0.4 Score=56.83 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=55.6
Q ss_pred ecCCceeEecCCCCCCHHHHHHHHHHHhC---CCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 20 SENGHSFELDCNENSPVEAVMRFIESAAG---INFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 20 AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~---IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
-..|+.+.+++....+|.+||..|+..+| ||+++|-|+..|..|....+|..|++...+--|++-.|.
T Consensus 7 tl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 7 TLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred eCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 47899999999999999999999999999 999999999877777778899999975333334444443
No 37
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.59 E-value=7.2 Score=44.24 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~ 872 (1154)
...+.++|+.|+..++++.++.+|+....+||..++.|+..+++.+++..+|
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777777777777776666
No 38
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=90.50 E-value=1.5 Score=41.03 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=49.5
Q ss_pred EEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEE-ecCC-----cc-ccccccccccCCCCCceEEEEec
Q 001114 17 VHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVL-CLDM-----KL-EPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 17 V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILL-tsgG-----kl-~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
|-..+++...+.......+|.+||.-|++.||+|+..|-|. ..+. .+ .....|.+|+.. +..+|.|=|.
T Consensus 6 i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~-dg~~IhVvD~ 81 (84)
T cd01789 6 ITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVD-DGCRIHVIDV 81 (84)
T ss_pred EEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCC-CCCEEEEEeC
Confidence 33334344445446789999999999999999999999984 3332 24 345779999854 6788888763
No 39
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=90.35 E-value=0.92 Score=42.49 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=52.3
Q ss_pred EEEEEecCCc---eeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEec---CCcc-----ccccccccccCCCCCceEEE
Q 001114 15 LLVHISENGH---SFELDCNENSPVEAVMRFIESAAGINFNDQLVLCL---DMKL-----EPQKLLSAYRLPSDDKEVFI 83 (1154)
Q Consensus 15 L~V~~AhtG~---~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLts---gGkl-----~k~~~L~~Y~l~~denEIFV 83 (1154)
+.|++.|+.. .++.......+|.+||.-|+..||||+++|.|..- ++.. ...+.|..|++- +--+|+|
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~-dg~~i~V 80 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIK-DGMRIHV 80 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-S-TTEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCC-CCCEEEE
Confidence 4566666666 77777788999999999999999999999997543 3322 346889999854 6678888
Q ss_pred Eec
Q 001114 84 FNK 86 (1154)
Q Consensus 84 FDR 86 (1154)
=|.
T Consensus 81 ~D~ 83 (87)
T PF14560_consen 81 VDT 83 (87)
T ss_dssp EE-
T ss_pred EeC
Confidence 774
No 40
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=90.19 E-value=51 Score=39.92 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001114 432 PAYRACLAEVVRRKASMKLY 451 (1154)
Q Consensus 432 ~aYga~LiEvVRRRew~~k~ 451 (1154)
-++...--|..||..|...|
T Consensus 375 eL~~l~eeE~~~Re~F~~e~ 394 (412)
T PF04108_consen 375 ELDKLREEEQRRREAFLKEY 394 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 55666668999999998776
No 41
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=88.58 E-value=72 Score=39.44 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 166 EQKVQERAVEVGRGNLEQYYRVINQNYNDFMK 197 (1154)
Q Consensus 166 Ei~vq~raL~aAvaNLe~~~~~lek~f~ef~~ 197 (1154)
.+.-|.++++.||..|+.|+..-..+.+....
T Consensus 262 ~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~ 293 (531)
T PF15450_consen 262 KLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLN 293 (531)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567889999999999999988877776665
No 42
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=87.99 E-value=1.6 Score=35.34 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=46.6
Q ss_pred CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 22 NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 22 tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
+|....+......++.+|+..|...+|++++.+-|+..++.+.....+..|... ....|.+.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~ 67 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQ-DGDELVLV 67 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCC-CCCEEEEE
Confidence 678888888889999999999999999999999999877666555554344432 33444443
No 43
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.83 E-value=6.7 Score=40.51 Aligned_cols=99 Identities=24% Similarity=0.273 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASE 900 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~ 900 (1154)
...-+.|..++..+...+..++..+.++.+.++.+.+|+...+......+..+.+++..+...+++.+.-+.....+...
T Consensus 51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq 130 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQ 130 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888889999999999999999999999999999999999999999999999888877777777767
Q ss_pred HHH-HHHhhhhhhhhhhhhc
Q 001114 901 YSA-LRASAVKLRGLFERLR 919 (1154)
Q Consensus 901 ~~~-l~~~~~r~~gl~~~~~ 919 (1154)
|.. +|..-.-+-.|++|+.
T Consensus 131 ~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 666 7777777777777764
No 44
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=86.47 E-value=23 Score=39.47 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=32.0
Q ss_pred HHhhhhhhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 962 RVLADRVAFLSRHREELLDKNRKVELAHEQLKKELEEKKELVKTLYTK 1009 (1154)
Q Consensus 962 ~~l~d~v~fl~~~~~~~~~r~~~~e~~~~~~~ke~~~k~~~~~~l~~k 1009 (1154)
..+-++|.+|..+..+.-.|+-.+|.-..+|.+++..=...|.+.=.|
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777777777777787777777777777766555555444333
No 45
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.26 E-value=0.47 Score=41.59 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=47.1
Q ss_pred ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccC
Q 001114 20 SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRL 74 (1154)
Q Consensus 20 AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l 74 (1154)
.-||..+.+|..+...|+.+|+-|+..-|||+.+|-|+.+|-.+-.+.+-.+|+.
T Consensus 7 tLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~ 61 (70)
T KOG0005|consen 7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNL 61 (70)
T ss_pred eeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhh
Confidence 4589999999999999999999999999999999999887766656666667754
No 46
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=84.68 E-value=2.3 Score=51.40 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=66.0
Q ss_pred eEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEeccccCCC
Q 001114 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLRLQSN 92 (1154)
Q Consensus 14 ~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRrll~~~ 92 (1154)
.++|.+-..+..+.|.+....+|..||+.|+..+++|+++++|+-.|-.|..+++|..|++- |...|+|-=|..-...
T Consensus 15 ~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~-Dg~TvHLVik~~~~~~ 92 (493)
T KOG0010|consen 15 LIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQ-DGHTVHLVIKSQPRPT 92 (493)
T ss_pred eeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCC-CCcEEEEEeccCCCCC
Confidence 36666666666888888899999999999999999999999999877778788999999874 8899999887765544
No 47
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=84.37 E-value=2.1 Score=41.61 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=46.3
Q ss_pred EecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccc-cccccccccCCCCCceEEEE
Q 001114 27 ELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLE-PQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 27 ~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~-k~~~L~~Y~l~~denEIFVF 84 (1154)
.+.+.+-.+|.+||.-|...++||+.+|=|+.-|-.|. ...+|.+|++. .+.-|+|.
T Consensus 18 ~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~-sgSvl~Ll 75 (107)
T cd01795 18 ALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVI-PESVILLK 75 (107)
T ss_pred eEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCC-CCCEEEEE
Confidence 45667889999999999999999999999987643343 56899999987 45667776
No 48
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=84.31 E-value=1.7 Score=40.25 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHhC--CC-CCCEEEEecCCccccccccccccCCCCCceEEEEe
Q 001114 32 ENSPVEAVMRFIESAAG--IN-FNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (1154)
Q Consensus 32 ~f~SVe~LK~~Ia~~t~--IP-~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFD 85 (1154)
...+|.+||.-|+..++ |+ +++|-|+.+|-.+...++|..|++. +..-|+++-
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~-~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQ-SGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCC-CCCEEEEEe
Confidence 46899999999999984 76 7777788877788888999999975 556666653
No 49
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=82.88 E-value=2.1e+02 Score=39.46 Aligned_cols=55 Identities=29% Similarity=0.361 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhhhhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 956 EFRKCIRVLADRVAFLSRHREELLDKNRKVELAHEQLKKELEEKKELVKTLYTKH 1010 (1154)
Q Consensus 956 ~f~~~i~~l~d~v~fl~~~~~~~~~r~~~~e~~~~~~~ke~~~k~~~~~~l~~k~ 1010 (1154)
+.+.-+.-+.+.+..+-.++..+-++...++....++..+.+...+.+..|-.++
T Consensus 867 ~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 921 (1163)
T COG1196 867 ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL 921 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666777777777777777777777777777777666666665554444
No 50
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=82.36 E-value=2.5 Score=37.81 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=49.1
Q ss_pred EEecCCceeEecCCCCCCHHHHHHHHHHHhCCCC-CCEEEEecCCccccccccccccCC
Q 001114 18 HISENGHSFELDCNENSPVEAVMRFIESAAGINF-NDQLVLCLDMKLEPQKLLSAYRLP 75 (1154)
Q Consensus 18 ~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~-~~QILLtsgGkl~k~~~L~~Y~l~ 75 (1154)
+...+|..+.+.+...+++..|.+.++...+||. .++.++.-|.++.+++++.+|++-
T Consensus 5 v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ie 63 (72)
T PF11976_consen 5 VRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIE 63 (72)
T ss_dssp EEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-S
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCC
Confidence 3456788999999999999999999999999999 777777777788889999999875
No 51
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=80.65 E-value=68 Score=41.25 Aligned_cols=183 Identities=20% Similarity=0.169 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEY 901 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~ 901 (1154)
..|..|+..+.++.-||.++.+++....-|...|+.-.-..+..|.|-..- |||.=-++-++-|.---.+|..-.-.
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~ete---lE~~~srlh~le~eLsAk~~eIf~~~ 168 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIE---IENLNSRLHKLEDELSAKAHDIFMIG 168 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhhHHHHHHH
Confidence 345566666777777777777777666666555555555555555444444 66655555555554444445544444
Q ss_pred HHHHHhhhhhhhhhhhhcccc--ccCC------cccchhhhHHHHHHhhcccCCCC-------CCcChH-----------
Q 001114 902 SALRASAVKLRGLFERLRSCV--FASE------GAGGFADSLRTLAQSLANSISDN-------EDDGTA----------- 955 (1154)
Q Consensus 902 ~~l~~~~~r~~gl~~~~~~~~--~~p~------~~~~~~~~l~~~~~~l~~~~~~~-------~~~~~~----------- 955 (1154)
..|+-+-..+-.+-+-+++-. .+-. ++-.|-+.+- .|+. ++..+-
T Consensus 169 ~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~---------~nD~~sle~~~~q~~tq~vl~ev~QLss 239 (1265)
T KOG0976|consen 169 EDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLI---------EKDQKSLELHKDQENTQKVLKEVMQLSS 239 (1265)
T ss_pred HHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544444444333333211 0000 0011111110 0000 111111
Q ss_pred HHH------HHHHHhhhhhhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001114 956 EFR------KCIRVLADRVAFLSRHREELLDKNRKVELAHEQLKKELEEKKELVKTLYTKHQLEKQA 1016 (1154)
Q Consensus 956 ~f~------~~i~~l~d~v~fl~~~~~~~~~r~~~~e~~~~~~~ke~~~k~~~~~~l~~k~~~~~~~ 1016 (1154)
+|+ +-...|-+.|-||----.+|.++-+.+++-+..|.+|+-.|.++||-+-.-++-+||-
T Consensus 240 ~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt 306 (1265)
T KOG0976|consen 240 QKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQT 306 (1265)
T ss_pred hHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111 1111122333344333468999999999999999999999999999998888877774
No 52
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=80.52 E-value=7.2 Score=33.40 Aligned_cols=64 Identities=19% Similarity=0.364 Sum_probs=52.1
Q ss_pred ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 20 SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 20 AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
..+|..+.+.+....+++.+|.-|+...+||.++|.+..++-.+.....+..|++. ....+++.
T Consensus 6 ~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~-~~~~~~l~ 69 (75)
T KOG0001|consen 6 TLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQ-EGSTLHLV 69 (75)
T ss_pred ecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCC-CCCEEEEE
Confidence 48999999999999999999999999999999999987777666667888888754 33444433
No 53
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=77.15 E-value=91 Score=33.52 Aligned_cols=40 Identities=10% Similarity=0.272 Sum_probs=19.1
Q ss_pred ccccChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 238 LDFVKEEHLR-KSAETCSSSHRQFENKVSQFKQIFDDVKRRVEEL 281 (1154)
Q Consensus 238 ~DfVd~e~Lr-k~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~Vd~L 281 (1154)
.-||+++.|+ ++...+...... +..+...++.+...|..+
T Consensus 92 ~a~i~e~~L~~el~~~l~~~~~~----~~~~~~~~~~~~~~vsdi 132 (204)
T PF04740_consen 92 NAIIDEDFLESELKKKLNQLKEQ----IEDLQDEINSILSSVSDI 132 (204)
T ss_pred cccccHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhccchHHH
Confidence 3467777776 554444444333 333333344433444444
No 54
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.82 E-value=26 Score=39.21 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=76.7
Q ss_pred CchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHh
Q 001114 818 KVSSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRR 897 (1154)
Q Consensus 818 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~ 897 (1154)
+.+...++.+.+.|-.-.+-+...+.-|+.+.+|...|..|=...-+.|...+.|=-|||+.+..|+++-.-.+-.+.|.
T Consensus 7 r~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 7 RNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777888888888888888888888888888999999999999999999998888888888888
Q ss_pred HHHHHHHHHhhhhh
Q 001114 898 ASEYSALRASAVKL 911 (1154)
Q Consensus 898 ~~~~~~l~~~~~r~ 911 (1154)
-.||..|....=++
T Consensus 87 ~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 87 YEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887766655444
No 55
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=76.50 E-value=6.7 Score=36.74 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=47.1
Q ss_pred ecCCce--eEecCCCCCCHHHHHHHHHHHhC-CC-CCCEEEEecCCccccccccccccC-CCCCceEEE
Q 001114 20 SENGHS--FELDCNENSPVEAVMRFIESAAG-IN-FNDQLVLCLDMKLEPQKLLSAYRL-PSDDKEVFI 83 (1154)
Q Consensus 20 AhtG~~--l~~d~~~f~SVe~LK~~Ia~~t~-IP-~~~QILLtsgGkl~k~~~L~~Y~l-~~denEIFV 83 (1154)
+-+|.. +.+++....+|.+||+-|+..++ +| +++|-|+-+|--|...++|..|.. ..+...|.+
T Consensus 8 ~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHL 76 (79)
T cd01790 8 SPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHL 76 (79)
T ss_pred CCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEE
Confidence 557777 44455788999999999999985 44 688888887767777789988851 224455554
No 56
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=76.30 E-value=8.2 Score=35.40 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=47.0
Q ss_pred EEEEecCC-ceeE-ecC-CCCCCHHHHHHHHHHHhCC-CCCCEEEE-ecCCccc-cccccccccCCCCCceEEEEe
Q 001114 16 LVHISENG-HSFE-LDC-NENSPVEAVMRFIESAAGI-NFNDQLVL-CLDMKLE-PQKLLSAYRLPSDDKEVFIFN 85 (1154)
Q Consensus 16 ~V~~AhtG-~~l~-~d~-~~f~SVe~LK~~Ia~~t~I-P~~~QILL-tsgGkl~-k~~~L~~Y~l~~denEIFVFD 85 (1154)
.|.++-+| ..+. ++. ....+|.+||..|+..++. +++.|=|. -+.|+.+ ...+|..|++. +..+|||=|
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~-~g~~lyvKD 76 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVG-AGATLYVRD 76 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCC-CCCEEEEee
Confidence 46667777 6654 233 3567999999999999975 55554443 3456544 46688999875 556888744
No 57
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=76.27 E-value=28 Score=40.54 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=58.2
Q ss_pred ecCCceeEecCCCCCCHHHHHHHHHHHhC--CCCCCEEEEecCCccccccccccccCCCCCceEEEEeccc
Q 001114 20 SENGHSFELDCNENSPVEAVMRFIESAAG--INFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (1154)
Q Consensus 20 AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~--IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRrl 88 (1154)
--.|++|++++.+-.+|-++|.-|+...| .|...|.|+-.|-.|....++..|+.-...--|++-.|.-
T Consensus 7 tL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 7 TLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred eccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 45799999999999999999999999999 9999999999888888899999998753334455555554
No 58
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=76.04 E-value=3.3e+02 Score=37.75 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=24.9
Q ss_pred HHhhhHHHHHHHHHhhhhHhHhHHHHHH-----HHHhh---hhhhhhhhhhc
Q 001114 876 LENCLHEAREEAQTHLCAADRRASEYSA-----LRASA---VKLRGLFERLR 919 (1154)
Q Consensus 876 ~en~~~~~~~~~~~~~~~~d~~~~~~~~-----l~~~~---~r~~gl~~~~~ 919 (1154)
+.+-+....++.+.....++.+..++.. |.+.| .+|.+|..++.
T Consensus 730 ~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~ 781 (1201)
T PF12128_consen 730 LDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIE 781 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455555555555555555665555554 77777 35555555544
No 59
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=75.87 E-value=7.3 Score=34.09 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLH 881 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~ 881 (1154)
++|+|+++.++.-.|+.+++|.+.+++-+++..+| .-.+|.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en---vk~ll~ 42 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEEN---VKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 68999999999999999999999999999999988 544443
No 60
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=75.14 E-value=79 Score=39.80 Aligned_cols=83 Identities=24% Similarity=0.270 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHh------
Q 001114 821 SELVLKLQSALADKSDQLSETQTK----LKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTH------ 890 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~------ 890 (1154)
++.|..||+++....+++.+++++ ...-.+||+.+-.||+..+..+...|.-|.||.+-+..|-+.++..
T Consensus 202 e~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~ 281 (629)
T KOG0963|consen 202 EKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDID 281 (629)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchH
Confidence 578999999999999999999999 8888999999999999999999999999999999999888777665
Q ss_pred -----hhhHhHhHHHHHH
Q 001114 891 -----LCAADRRASEYSA 903 (1154)
Q Consensus 891 -----~~~~d~~~~~~~~ 903 (1154)
+|.-|+-+..+++
T Consensus 282 ~~~~~L~~kd~~i~~L~~ 299 (629)
T KOG0963|consen 282 ALGSVLNQKDSEIAQLSN 299 (629)
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 7888998888877
No 61
>PRK03918 chromosome segregation protein; Provisional
Probab=74.73 E-value=1.1e+02 Score=40.31 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=11.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 001114 827 LQSALADKSDQLSETQTKLKAVMEEVVML 855 (1154)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 855 (1154)
++..++...+++.+++.++..+.+++..+
T Consensus 198 l~~~~~~l~~ei~~l~~e~~~l~~~~~~~ 226 (880)
T PRK03918 198 KEKELEEVLREINEISSELPELREELEKL 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444443333333
No 62
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=74.02 E-value=1.6e+02 Score=33.16 Aligned_cols=55 Identities=7% Similarity=0.082 Sum_probs=30.1
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001114 353 HDKSHLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFP 408 (1154)
Q Consensus 353 Htk~lLPsL~~~~~eL~d~l~~~~~~KNeL~~~~~~~Lr~IS~IQs~I~evk~~L~ 408 (1154)
|...-...+.+...-|.++++-|...|..+...+ ..++.....+..+...+..+.
T Consensus 96 ~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~-k~~~~~~~a~~~L~kkr~~~~ 150 (234)
T cd07664 96 HQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRM-KCWQKWQDAQVTLQKKREAEA 150 (234)
T ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3333344556666677777777777776665544 233333344444444444433
No 63
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=73.25 E-value=1.7e+02 Score=33.05 Aligned_cols=133 Identities=8% Similarity=0.146 Sum_probs=65.0
Q ss_pred hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhh---HHHHH-
Q 001114 349 MYDVHDKSHLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVFREAMVRQDD---IFADL- 424 (1154)
Q Consensus 349 ma~~Htk~lLPsL~~~~~eL~d~l~~~~~~KNeL~~~~~~~Lr~IS~IQs~I~evk~~L~~L~e~L~rq~d---~F~~L- 424 (1154)
+...|..+-..-+.+...-|.++++-|...|..+....-..-. ....+..+...+..+..+... .+.++ .-..+
T Consensus 92 i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~-~~~~~~~l~kKr~~~~Kl~~~-~~~dK~~~a~~Ev~ 169 (234)
T cd07665 92 IEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQR-WQDAQAMLQKKREAEARLLWA-NKPDKLQQAKDEIA 169 (234)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHH
Confidence 3334444445567777777888888887777666554433322 233344444433333333111 01100 00111
Q ss_pred ---HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 001114 425 ---KLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKANSVYIP 485 (1154)
Q Consensus 425 ---~~V~~LP~aYga~LiEvVRRRew~~k~~~~as~LAEeLa~lreeE~kRRekf~K~~G~~LP 485 (1154)
+.++..-.-|.. +.+.+ |+|+..+=...+..+-..+..+.+.-...-+.-.+-++.|+|
T Consensus 170 e~e~k~~~a~~~fe~-is~~i-k~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~flp 231 (234)
T cd07665 170 EWESRVTQYERDFER-ISATV-RKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFLP 231 (234)
T ss_pred HHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111111111211 22222 345544446666666666666666666666667777777776
No 64
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.23 E-value=14 Score=33.85 Aligned_cols=50 Identities=22% Similarity=0.152 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhhh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEE--------------VVMLGRELEMRQKLLDESQM 871 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~~el~~~~~~l~e~~~ 871 (1154)
-.+..|++.|+.-+.+++-.+.-++.+..| +..|+.|++.+++.|+++.+
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467788888888777777777766666666 77888888888888877653
No 65
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=71.86 E-value=2.8e+02 Score=35.08 Aligned_cols=155 Identities=14% Similarity=0.251 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhc-CCCCccccc-------------
Q 001114 167 QKVQERAVEVGRGNLEQYYRVINQNYNDFMKRYSQ-QQRVHSDLLANFGRDIEKLRS-VKLHPSLQT------------- 231 (1154)
Q Consensus 167 i~vq~raL~aAvaNLe~~~~~lek~f~ef~~~~~q-ll~~~~~LL~~we~dLe~Lr~-IpIhpaL~~------------- 231 (1154)
+....-...-|+..|+.....++..|..|..+-.. -...-.++|...+..+..|.. ++-.|.+..
T Consensus 152 ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL 231 (560)
T PF06160_consen 152 LLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEEL 231 (560)
T ss_pred HHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Confidence 33444455667778888888888888888886553 112223445555555544332 222233322
Q ss_pred -------ccccccccccC-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCC--ChhhHHHHHHHH
Q 001114 232 -------ATCKCLLDFVK-EEHLRKSAETCSSSHRQFEN-KVSQFKQIFDDVKRRVEELLNTRASL--PIKNLEMMIKEH 300 (1154)
Q Consensus 232 -------e~~~TL~DfVd-~e~Lrk~ae~C~~s~~~f~~-Kv~~L~~~i~~Ik~~Vd~L~~~~~~~--sl~~Le~~l~e~ 300 (1154)
...+.-.+-++ ...+.++.+.+......+.. .+.+++..+..|...++.|....... +-+..+..+...
T Consensus 232 ~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l 311 (560)
T PF06160_consen 232 KEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKEL 311 (560)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 01222222233 23444444444444444433 55666667777777777765432110 011222233333
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 001114 301 QRFINEQKSIMQSLSKDVSTV 321 (1154)
Q Consensus 301 ~~li~Eq~siaqsL~kD~e~V 321 (1154)
...+..+....+.+...+++|
T Consensus 312 ~~~l~~~~~~~~~l~~e~~~v 332 (560)
T PF06160_consen 312 YEYLEHAKEQNKELKEELERV 332 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555444
No 66
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=71.75 E-value=25 Score=42.35 Aligned_cols=81 Identities=25% Similarity=0.250 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHH-HHHHHhhhhHhHhHHHH
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAR-EEAQTHLCAADRRASEY 901 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~-~~~~~~~~~~d~~~~~~ 901 (1154)
+-.+|+..+.+..++...+.-++..-.+-.+.|..+|..-++.|.|..-|-.-|++.+..|+ +.|+..-.++=+++.+-
T Consensus 183 eq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~aa~~ 262 (420)
T COG4942 183 EQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAA 262 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444444888888999999999999999999999999888 55544444443444443
Q ss_pred HH
Q 001114 902 SA 903 (1154)
Q Consensus 902 ~~ 903 (1154)
-.
T Consensus 263 ~~ 264 (420)
T COG4942 263 RA 264 (420)
T ss_pred HH
Confidence 33
No 67
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=71.56 E-value=2.7e+02 Score=34.71 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHHHHHhhhhhhhhhhhhcc------------cc-c
Q 001114 857 RELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSALRASAVKLRGLFERLRS------------CV-F 923 (1154)
Q Consensus 857 ~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~r~~gl~~~~~~------------~~-~ 923 (1154)
..++.+.....+...++....+..+++.+.++.-....+.-...+..|.....+|.++.+-.+. .| .
T Consensus 305 ~s~eeis~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~i~~~I~~Ia~QTNLLALNAaIEA 384 (553)
T PRK15048 305 ASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEA 384 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666777777788888888888888888888888888888887777777665554 34 2
Q ss_pred cC----C-cccchhhhHHHHHHhhccc
Q 001114 924 AS----E-GAGGFADSLRTLAQSLANS 945 (1154)
Q Consensus 924 ~p----~-~~~~~~~~l~~~~~~l~~~ 945 (1154)
|- + |.+--||++|.||.--..+
T Consensus 385 ARAGE~GrGFAVVA~EVr~LA~~t~~s 411 (553)
T PRK15048 385 ARAGEQGRGFAVVAGEVRNLASRSAQA 411 (553)
T ss_pred hccccCCCCChhHHHHHHHHHHHHHHH
Confidence 22 2 5577789999999876553
No 68
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=71.54 E-value=62 Score=42.22 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHH
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRAS 899 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~ 899 (1154)
+++.|.+|......-...+..+..+|..+..|.+.|+-||-.+++.|+=-++- .|=. |.-|-+-.+-+=.-+-
T Consensus 118 ~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E---~~~~----~~~ae~a~kqhle~vk 190 (769)
T PF05911_consen 118 KEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEE---REYS----RRAAEAASKQHLESVK 190 (769)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh----HHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999888622111 0000 0011111111222233
Q ss_pred HHHHHHHhhhhhhhhhhhhccccccCCcccchhhhHHHHHH-----------hhcccCCCCCCcChHHHHHHHHHhhhhh
Q 001114 900 EYSALRASAVKLRGLFERLRSCVFASEGAGGFADSLRTLAQ-----------SLANSISDNEDDGTAEFRKCIRVLADRV 968 (1154)
Q Consensus 900 ~~~~l~~~~~r~~gl~~~~~~~~~~p~~~~~~~~~l~~~~~-----------~l~~~~~~~~~~~~~~f~~~i~~l~d~v 968 (1154)
.+..|++---|+|+|..|+- --|++++..-...-.++. +-|+++..... +++
T Consensus 191 kiakLEaEC~rLr~l~rk~l---pgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~--------------~~~ 253 (769)
T PF05911_consen 191 KIAKLEAECQRLRALVRKKL---PGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSP--------------QNP 253 (769)
T ss_pred HHHHHHHHHHHHHHHHhccC---CChHHHHHhHHHHHHhccccccccCCCCCCcccccccccc--------------ccc
Confidence 44458888899999988765 122222222233333311 11111111112 233
Q ss_pred hhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHH-----hhhhhhh
Q 001114 969 AFLSRHREELLDKNRKVELAHEQLKKELEEKKELV---KTLYTK-----HQLEKQA 1016 (1154)
Q Consensus 969 ~fl~~~~~~~~~r~~~~e~~~~~~~ke~~~k~~~~---~~l~~k-----~~~~~~~ 1016 (1154)
.--.+-..-+.+|-..||.=+|.|+.=|-.|..++ +++|+| .++|.|-
T Consensus 254 ~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 254 QKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222233455677777777777766666665544 567776 3566665
No 69
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=70.91 E-value=18 Score=39.94 Aligned_cols=74 Identities=23% Similarity=0.261 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHH
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYS 902 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~ 902 (1154)
+...+++.++..++ ++++.....++...|+.||++.++.|+.-|.+ .+++-- -++-.+.-.||...||+
T Consensus 135 ~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~---~~al~K----q~e~~~~EydrLlee~~ 203 (216)
T KOG1962|consen 135 ENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKK---VDALKK----QSEGLQDEYDRLLEEYS 203 (216)
T ss_pred HHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHcccHHHHHHHHHH
Confidence 34445555544444 55556666666667777777777777766666 555555 55666777888888998
Q ss_pred HHHHh
Q 001114 903 ALRAS 907 (1154)
Q Consensus 903 ~l~~~ 907 (1154)
.|+..
T Consensus 204 ~Lq~~ 208 (216)
T KOG1962|consen 204 KLQEQ 208 (216)
T ss_pred HHHHH
Confidence 88764
No 70
>PLN02560 enoyl-CoA reductase
Probab=69.90 E-value=14 Score=42.92 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=49.5
Q ss_pred ecCCcee---EecCCCCCCHHHHHHHHHHHhCC-CCCCEEEEec------CCc-cccccccccccCCCCCceEEEEe
Q 001114 20 SENGHSF---ELDCNENSPVEAVMRFIESAAGI-NFNDQLVLCL------DMK-LEPQKLLSAYRLPSDDKEVFIFN 85 (1154)
Q Consensus 20 AhtG~~l---~~d~~~f~SVe~LK~~Ia~~t~I-P~~~QILLts------gGk-l~k~~~L~~Y~l~~denEIFVFD 85 (1154)
+-+|..+ ++++..-.+|++||..|++..++ +++.|=|... .|+ +....+|.+|++. +..+|||=|
T Consensus 7 ~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~-~gstLy~kD 82 (308)
T PLN02560 7 SRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLG-DGGTVVFKD 82 (308)
T ss_pred cCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCC-CCceEEEEe
Confidence 5678887 67888888999999999999997 7777776642 233 4456788999874 566888877
No 71
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=69.12 E-value=27 Score=35.51 Aligned_cols=71 Identities=24% Similarity=0.277 Sum_probs=53.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHHHHHhhhh
Q 001114 831 LADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSALRASAVK 910 (1154)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~r 910 (1154)
+..-...+..+...+..+...+..++.+|+.-+....+.|.| ||+=|. +.+.| +.+++.||.-.-.
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~---YE~El~---------~Ha~~--~~~L~~lr~e~~~ 70 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQK---YERELV---------KHAED--IKELQQLREELQE 70 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---------HhHHH--HHHHHHHHHHHHH
Confidence 333444556666677777788889999999999999999999 999887 77777 7778887776644
Q ss_pred hhhhh
Q 001114 911 LRGLF 915 (1154)
Q Consensus 911 ~~gl~ 915 (1154)
++.-+
T Consensus 71 ~~~~~ 75 (132)
T PF07926_consen 71 LQQEI 75 (132)
T ss_pred HHHHH
Confidence 44333
No 72
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.71 E-value=15 Score=38.66 Aligned_cols=66 Identities=23% Similarity=0.331 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhhhhhhHHhhhHHHHH
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGREL--EMRQKLLDESQMNCAHLENCLHEARE 885 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el--~~~~~~l~e~~~~~~~~en~~~~~~~ 885 (1154)
+..++.++...+.+..+++.+++..++.+..|++.|++++ +.++..+.+.+..|..|+..|+..|.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778888888888888888888888888888888887 47888888999999999999997776
No 73
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=66.94 E-value=97 Score=39.49 Aligned_cols=131 Identities=17% Similarity=0.174 Sum_probs=90.0
Q ss_pred cCCCCCCCchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHh
Q 001114 811 ADSGLDPKVSSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTH 890 (1154)
Q Consensus 811 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~ 890 (1154)
+.+..+-..+++.|+-|+..+.+|++.+.++.-.|..-..-|+.|...-+.-...|-+++..=-||.--||+|.-.-|-
T Consensus 229 eey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~- 307 (786)
T PF05483_consen 229 EEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQE- 307 (786)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH-
Confidence 3677777889999999999999999999999999999999999999999999999999999988888888855433322
Q ss_pred hhhHhHhHHHHHHHHHhhhhhhhhhhhhcc----cc---ccCC-cccchhhhHHHHHHhhcc
Q 001114 891 LCAADRRASEYSALRASAVKLRGLFERLRS----CV---FASE-GAGGFADSLRTLAQSLAN 944 (1154)
Q Consensus 891 ~~~~d~~~~~~~~l~~~~~r~~gl~~~~~~----~~---~~p~-~~~~~~~~l~~~~~~l~~ 944 (1154)
|-.-.++-++ -|..-...+--|.+-+-+ |. ++-+ .|..|--++.+|..+|..
T Consensus 308 -~~~tq~~le~-~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~ 367 (786)
T PF05483_consen 308 -SESTQKALEE-DLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTT 367 (786)
T ss_pred -HHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222 133333333333333332 11 2222 446677777777777755
No 74
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=66.43 E-value=78 Score=33.76 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHH
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYS 902 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~ 902 (1154)
....++.++++-++.+.+++..+....+....++.++...+..++...++|.-++-.+.+.+.+-+-.+|.++....++.
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~ 168 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLE 168 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444455555555666777777777443443344333222333344444444443
Q ss_pred H
Q 001114 903 A 903 (1154)
Q Consensus 903 ~ 903 (1154)
.
T Consensus 169 ~ 169 (191)
T PF04156_consen 169 R 169 (191)
T ss_pred H
Confidence 3
No 75
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=66.40 E-value=2.1e+02 Score=31.64 Aligned_cols=41 Identities=10% Similarity=0.188 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 001114 445 KASMKLYMGMAGQLAERLATKREVEVRRREEFLKANSVYIP 485 (1154)
Q Consensus 445 Rew~~k~~~~as~LAEeLa~lreeE~kRRekf~K~~G~~LP 485 (1154)
.|+..+=...+..+-..|..+.+.....=+...+-++.|+|
T Consensus 181 ~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~p 221 (224)
T cd07623 181 KEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLP 221 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444445566666666777777777777777777777776
No 76
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=65.63 E-value=2.6e+02 Score=34.17 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhh-hhHhHhH
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHL-CAADRRA 898 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~-~~~d~~~ 898 (1154)
-..++..+.+++.+..++...|+..|+.+..||+.+..+|-.++.-|+++.-+-+-++-.+. -.+.++ ..-++.+
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~----~l~~q~r~qr~~La 118 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN----ALEVQEREQRRRLA 118 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666777766666666666666666555555444 222222 3344455
Q ss_pred HHHHHHHHhh
Q 001114 899 SEYSALRASA 908 (1154)
Q Consensus 899 ~~~~~l~~~~ 908 (1154)
.-++++--||
T Consensus 119 ~~L~A~~r~g 128 (420)
T COG4942 119 EQLAALQRSG 128 (420)
T ss_pred HHHHHHHhcc
Confidence 5555555554
No 77
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=65.61 E-value=13 Score=37.15 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=47.9
Q ss_pred EEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCC
Q 001114 17 VHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLP 75 (1154)
Q Consensus 17 V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~ 75 (1154)
+-+-..-.+|-+|+...++|=+||+-|+..+..|+.+|.|+-.+.-+...++|..|+..
T Consensus 5 lmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t 63 (119)
T cd01788 5 LMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFT 63 (119)
T ss_pred EEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCcc
Confidence 33444455666799999999999999999999999999999334557888999998874
No 78
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=64.08 E-value=23 Score=35.26 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDES 869 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~ 869 (1154)
+.+..|+..+.+-.+++.+++..+..+++|-+.|+.|-+.++..|++.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999999999999999999999975
No 79
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=63.79 E-value=23 Score=36.67 Aligned_cols=70 Identities=24% Similarity=0.325 Sum_probs=56.2
Q ss_pred CCCchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHH
Q 001114 816 DPKVSSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEARE 885 (1154)
Q Consensus 816 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~ 885 (1154)
++.+.-.++..|+..+..-+..+..++..|..+..|--.|..+|...+.++.|....+-+++|+|+++=.
T Consensus 46 daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 46 DAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444566777888888888888888888888888888888888888888899998888889999986533
No 80
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=63.40 E-value=2.6e+02 Score=31.62 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhccccccccCCCCccccccccCchhhhhhccchHHHHHHHHHHHHHHHHHHHH
Q 001114 299 EHQRFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPRMQACDRSISKLLDFCQDK 378 (1154)
Q Consensus 299 e~~~li~Eq~siaqsL~kD~e~V~kL~dd~~~~~lssS~~s~davs~Ls~ma~~Htk~lLPsL~~~~~eL~d~l~~~~~~ 378 (1154)
.+..+..++.+.++++..|...+-+-.++.... ....+.+.+|.++...|-+ -|..|.++.-.|.+.+..+.+.
T Consensus 175 qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~-----~d~t~~~~qi~Kilnah~~-sLqwl~d~st~~e~k~d~i~K~ 248 (254)
T KOG2196|consen 175 QTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKT-----VDKTDPIIQIEKILNAHMD-SLQWLDDNSTQLEKKLDKIKKL 248 (254)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCc-----cccCCchHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHhh
Confidence 455678888888889998888775544442221 1122335666666666654 3455666666666666555544
Q ss_pred H
Q 001114 379 K 379 (1154)
Q Consensus 379 K 379 (1154)
+
T Consensus 249 ~ 249 (254)
T KOG2196|consen 249 K 249 (254)
T ss_pred h
Confidence 3
No 81
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=63.15 E-value=24 Score=34.90 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQM 871 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~ 871 (1154)
+.+.+|+..|.+-..++.+++..+..+++|=+.|+.|-+.++..|++...
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788999999999999999999999999999999999999999997654
No 82
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.12 E-value=3.8e+02 Score=34.99 Aligned_cols=157 Identities=26% Similarity=0.312 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASE 900 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~ 900 (1154)
+.++.+=.++=+.-..+|.++++.|+....++++.+.|.+.+.....+..++|.-+|-.----|++-+--+-.-=|...+
T Consensus 19 e~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~d 98 (717)
T PF09730_consen 19 ESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQD 98 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555666788999999999999999999999999999999999999988877776677777667777788999
Q ss_pred HHHHHHhhhhhhhhhhhhccccccCCcccchhhhHHHHHHhhcccCCCCCCcChHHH---HHHHHHhhhhhhhhhhcHHH
Q 001114 901 YSALRASAVKLRGLFERLRSCVFASEGAGGFADSLRTLAQSLANSISDNEDDGTAEF---RKCIRVLADRVAFLSRHREE 977 (1154)
Q Consensus 901 ~~~l~~~~~r~~gl~~~~~~~~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~f---~~~i~~l~d~v~fl~~~~~~ 977 (1154)
|+.|+.-.+-+--.. -+|+ .+-++| .+=|+.|.+-+.||+.|.++
T Consensus 99 yselEeENislQKqv-----------------s~Lk---------------~sQvefE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 99 YSELEEENISLQKQV-----------------SVLK---------------QSQVEFEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred hHHHHHHHHHHHHHH-----------------HHHH---------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887553222111 1222 112344 45688888999999999888
Q ss_pred HHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 978 LLDKNRK-----VELAHEQLKKELEEKKELVKTLYTKH 1010 (1154)
Q Consensus 978 ~~~r~~~-----~e~~~~~~~ke~~~k~~~~~~l~~k~ 1010 (1154)
+. |-++ +|-+-.-|..|-|.|..+=|-|-..+
T Consensus 147 ~~-rLk~iae~qleEALesl~~EReqk~~LrkEL~~~~ 183 (717)
T PF09730_consen 147 AA-RLKEIAEKQLEEALESLKSEREQKNALRKELDQHL 183 (717)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 65 4444 78888889999999988888887765
No 83
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.07 E-value=4.6e+02 Score=34.33 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 001114 177 GRGNLEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRS 222 (1154)
Q Consensus 177 AvaNLe~~~~~lek~f~ef~~~~~qll~~~~~LL~~we~dLe~Lr~ 222 (1154)
-++.+..-...+..+.....+.|....++|..|..+.+.-+..+..
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555677777778888888888999999999999999988754
No 84
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=62.59 E-value=4.1e+02 Score=33.61 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 174 VEVGRGNLEQYYRVINQNYNDFMKRY 199 (1154)
Q Consensus 174 L~aAvaNLe~~~~~lek~f~ef~~~~ 199 (1154)
...|+..|+.-...++..|..|..+-
T Consensus 163 ~G~a~~~le~~l~~~e~~f~~f~~l~ 188 (569)
T PRK04778 163 FGPALDELEKQLENLEEEFSQFVELT 188 (569)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566667777777777777777753
No 85
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=62.10 E-value=75 Score=29.40 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 836 DQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
..+++++.|+..+++-|+.|+.|++.++.+-.+..
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45788999999999999999999999888766655
No 86
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=61.16 E-value=1.4e+02 Score=38.69 Aligned_cols=150 Identities=21% Similarity=0.231 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEY 901 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~ 901 (1154)
.+|..|+..|..--..=.|++.+|.-+...=-.|+.||..+|..-|+.|.-+.+|.+ ||+.-+-.+...+||..|-
T Consensus 425 ~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~----aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 425 ADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ----ARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666677776665554456666666666666665555433333 4557777778888888887
Q ss_pred HHHHHhh-hhhhhhhhhhccccccCCcccchhhhHHHHHHhhcccCCCCCCcChHHHHHHHHHhhhhhhhhhhcHHHHHH
Q 001114 902 SALRASA-VKLRGLFERLRSCVFASEGAGGFADSLRTLAQSLANSISDNEDDGTAEFRKCIRVLADRVAFLSRHREELLD 980 (1154)
Q Consensus 902 ~~l~~~~-~r~~gl~~~~~~~~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~f~~~i~~l~d~v~fl~~~~~~~~~ 980 (1154)
-..|... ..+.-.+.++.--..+ .|..++.... .++ ..-+.+-.
T Consensus 501 ~~~R~~lEkQL~eErk~r~~ee~~-------------aar~~~~~~~-------------------~r~---e~~e~~r~ 545 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKARKEEEEK-------------AARALAQAQA-------------------TRQ---ECAESCRQ 545 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHh-------------hhhccccchh-------------------ccc---hhHHHHHH
Confidence 7766655 3333333222210000 1111111000 000 00112455
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 981 KNRKVELAHEQLKKELEEKKELVKTLYTKH 1010 (1154)
Q Consensus 981 r~~~~e~~~~~~~ke~~~k~~~~~~l~~k~ 1010 (1154)
|-+++|.=.++|+.|++.|+|.+..|-...
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999887766
No 87
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=60.66 E-value=93 Score=33.05 Aligned_cols=122 Identities=17% Similarity=0.224 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHH
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYS 902 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~ 902 (1154)
+...|..++++|++.|..+..+....+..++..+.-|......+......=+-.+..+.+.|++...-....|..-..+.
T Consensus 50 en~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~ 129 (177)
T PF13870_consen 50 ENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNK 129 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888877777777766666555555544444333444455455544444444444444444
Q ss_pred HHHHhhhhhhhhhhhhccccccCCccc-chhhhHHHHHHhhcccCCCCCCcChHHHHHHHHHhhhhhhhhh
Q 001114 903 ALRASAVKLRGLFERLRSCVFASEGAG-GFADSLRTLAQSLANSISDNEDDGTAEFRKCIRVLADRVAFLS 972 (1154)
Q Consensus 903 ~l~~~~~r~~gl~~~~~~~~~~p~~~~-~~~~~l~~~~~~l~~~~~~~~~~~~~~f~~~i~~l~d~v~fl~ 972 (1154)
.|+..| | -++.| +++ +|......+ .+.++.|+.|--+|..+.
T Consensus 130 ~l~~~~----~-------~~~~P-~ll~Dy~~~~~~~----------------~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 130 KLRQQG----G-------LLGVP-ALLRDYDKTKEEV----------------EELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHhc----C-------CCCCc-HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH
Confidence 444322 1 12567 665 677665533 567777777666555443
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.57 E-value=71 Score=36.03 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001114 639 HIQAMLKAKQMQCVSYEKRIQELEQRLSDQYL 670 (1154)
Q Consensus 639 ~lq~~~~~~~~~~~~~e~RIr~LE~lL~~Q~~ 670 (1154)
-++-++...++++...+++|++++.++.+-..
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888999999999999888877666
No 89
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=59.35 E-value=5.2e+02 Score=33.69 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCChhh-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 243 EEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRA----SLPIKN-LEMMIKEHQRFINEQKSIMQSLSKD 317 (1154)
Q Consensus 243 ~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~Vd~L~~~~~----~~sl~~-Le~~l~e~~~li~Eq~siaqsL~kD 317 (1154)
...++.|....+.....|...+.+++..|..+-..|+....+-. +.++.. +..+.+.+.+|..+++.....+.+.
T Consensus 38 ~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~~vK~~L~~vK~q 117 (683)
T PF08580_consen 38 AEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQMELDVKKTLISVKKQ 117 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999888777777543321 223333 5666666666666666555555555
Q ss_pred HHHHH
Q 001114 318 VSTVK 322 (1154)
Q Consensus 318 ~e~V~ 322 (1154)
++...
T Consensus 118 veiAm 122 (683)
T PF08580_consen 118 VEIAM 122 (683)
T ss_pred HHHHH
Confidence 54443
No 90
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=58.60 E-value=1e+02 Score=33.64 Aligned_cols=81 Identities=23% Similarity=0.280 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHh---hhhHhHhH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTH---LCAADRRA 898 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~---~~~~d~~~ 898 (1154)
.+|.|.+.-+.+-...|...+.-+..++.-...-+.+++.++.+|...+.|+.|.+...+.|.-+...+ +-.|-+|+
T Consensus 74 ~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rv 153 (188)
T PF05335_consen 74 QEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRV 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666777777777777777777888889999999999999999999999988665554444 44455555
Q ss_pred HHHH
Q 001114 899 SEYS 902 (1154)
Q Consensus 899 ~~~~ 902 (1154)
.++.
T Consensus 154 e~L~ 157 (188)
T PF05335_consen 154 EELQ 157 (188)
T ss_pred HHHH
Confidence 4443
No 91
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=58.47 E-value=6.3e+02 Score=34.37 Aligned_cols=45 Identities=7% Similarity=-0.035 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 157 IEMCERLLREQKVQERAVEVGRGNLEQYYRVINQNYNDFMKRYSQ 201 (1154)
Q Consensus 157 ~e~ce~Lv~Ei~vq~raL~aAvaNLe~~~~~lek~f~ef~~~~~q 201 (1154)
.+.|...+.+++.........+.+++.-+..+++.+.+....+..
T Consensus 209 L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~ 253 (1074)
T KOG0250|consen 209 LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDN 253 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777788888888877766653
No 92
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=57.71 E-value=30 Score=41.65 Aligned_cols=84 Identities=15% Similarity=0.197 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhcCcccccCcccccccchhhhhHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001114 586 KLKAELASAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYEKRIQELEQRL 665 (1154)
Q Consensus 586 ~l~~el~~~ia~~~~~~~~~~~~s~~~~~~~~~~~~a~~~t~~~l~~kde~~~~lq~~~~~~~~~~~~~e~RIr~LE~lL 665 (1154)
|-|-.|...|..|+..-|--..+++.-+ +|.+|+.+.+....+. -+.+-++.++...+.++...+-|..||++||..+
T Consensus 243 RRR~nIN~~IkeLg~liP~~~~~~~~~n-KgtILk~s~dYIr~Lq-q~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~ 320 (411)
T KOG1318|consen 243 RRRENINDRIKELGQLIPKCNSEDMKSN-KGTILKASCDYIRELQ-QTLQRARELENRQKKLESTNQELALRIEELKSEA 320 (411)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcchhhcc-cchhhHHHHHHHHHHH-HHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHH
Confidence 3345688899999999877666666554 8888898888665543 3455577777778888899999999999999999
Q ss_pred HHHHHh
Q 001114 666 SDQYLM 671 (1154)
Q Consensus 666 ~~Q~~~ 671 (1154)
.++..+
T Consensus 321 ~~~~~~ 326 (411)
T KOG1318|consen 321 GRHGLQ 326 (411)
T ss_pred HHhcCc
Confidence 988874
No 93
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=56.43 E-value=2.2e+02 Score=38.33 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=92.7
Q ss_pred CCchhHHHHHHHHHHHh----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 001114 817 PKVSSELVLKLQSALAD----------KSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREE 886 (1154)
Q Consensus 817 ~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~ 886 (1154)
++|+++.+..|..+-+. +...+++.+++++.+...++.++.+++.++..|+..+----|+|+.|. +
T Consensus 647 ~~wdek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~----~ 722 (1141)
T KOG0018|consen 647 AKWDEKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEID----E 722 (1141)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence 55777766666544333 444566677788888888999999999888777766666566777766 2
Q ss_pred HHHhhhhHhHhHHHHHHHHHhhhhhhhhhhhhcc---cc---ccCC-ccc-chhhhHHHHHHhhcccCCCCCCcChHHHH
Q 001114 887 AQTHLCAADRRASEYSALRASAVKLRGLFERLRS---CV---FASE-GAG-GFADSLRTLAQSLANSISDNEDDGTAEFR 958 (1154)
Q Consensus 887 ~~~~~~~~d~~~~~~~~l~~~~~r~~gl~~~~~~---~~---~~p~-~~~-~~~~~l~~~~~~l~~~~~~~~~~~~~~f~ 958 (1154)
-+-+....-| .|+.+-.+++-|.+|.+. .| +.|. ||. +=-+.- .+.+..+. ..-+|+
T Consensus 723 ~~p~i~~i~r------~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~-~~~~~~a~--------k~~ef~ 787 (1141)
T KOG0018|consen 723 FGPEISEIKR------KLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEER-ELQQEFAK--------KRLEFE 787 (1141)
T ss_pred hCchHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHH-HHHHHHHH--------HHHHHH
Confidence 2222221111 133334556666666664 22 2232 542 111111 12222222 345788
Q ss_pred HHHHHhhhhhhhhhhcHHHHHHHhHHHHHHHHHHHHHHHH
Q 001114 959 KCIRVLADRVAFLSRHREELLDKNRKVELAHEQLKKELEE 998 (1154)
Q Consensus 959 ~~i~~l~d~v~fl~~~~~~~~~r~~~~e~~~~~~~ke~~~ 998 (1154)
+-|..|.-++.|.-+ ...-+|+-+.|...+.+.++++.
T Consensus 788 ~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~ 825 (1141)
T KOG0018|consen 788 NQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEG 825 (1141)
T ss_pred HHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHh
Confidence 888888888888765 35666666666666666655543
No 94
>PF12179 IKKbetaNEMObind: I-kappa-kinase-beta NEMO binding domain; InterPro: IPR022007 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with PF00069 from PFAM. These proteins are involved in inflammatory reactions. They cause release of NF-kappa-B into the nucleus of inflammatory cells and upregulation of transcription of proinflammatory cytokines. They perform this function by phosphorylating I-kappa-B proteins which are targeted for degradation to release NF-kappa-B. This kinase (I-kappa-kinase-beta) is found in association with IKK-alpha and NEMO (NF-kappa-B essential modulator). This domain is the binding site of IKK-beta for NEMO. ; GO: 0008384 IkappaB kinase activity; PDB: 3BRT_C 3BRV_C.
Probab=55.97 E-value=13 Score=30.10 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.4
Q ss_pred HHHHhhhhhhhhhHHhhhHHHHHH
Q 001114 863 QKLLDESQMNCAHLENCLHEAREE 886 (1154)
Q Consensus 863 ~~~l~e~~~~~~~~en~~~~~~~~ 886 (1154)
..++.|.+-=|.+|++.|.||++|
T Consensus 2 ~~lv~En~~~lsqL~s~mqdt~~E 25 (38)
T PF12179_consen 2 EQLVEENQNYLSQLESLMQDTMKE 25 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999988876
No 95
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.33 E-value=5.4e+02 Score=32.61 Aligned_cols=193 Identities=11% Similarity=0.202 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHhhcCCCCcccccccccccccccCh--hHHHHHHHHHHHHHHHHHHHH
Q 001114 188 INQNYNDFMKRYSQQQRVHSDLLANFGRD-IEKLRSVKLHPSLQTATCKCLLDFVKE--EHLRKSAETCSSSHRQFENKV 264 (1154)
Q Consensus 188 lek~f~ef~~~~~qll~~~~~LL~~we~d-Le~Lr~IpIhpaL~~e~~~TL~DfVd~--e~Lrk~ae~C~~s~~~f~~Kv 264 (1154)
.+-.+..+.+-...+..++..++.+.... .+....+++.|.=. .....||=+. -.+..|.+........-..+.
T Consensus 365 ~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~---~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~ 441 (581)
T KOG0995|consen 365 LKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERA---ATNGVDLKSYVKPLLKELLDEISEELHEAENEL 441 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccC---ccccccchhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555666666666666 45555566665322 2334444332 355666666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHH----HhHHHH-HhhhhccccccccCCCCc
Q 001114 265 SQFKQIFDDVKRRVEELLNTRASLPIKNLEMMIKEHQRFINEQKSIMQSLS----KDVSTV-KKLVDDCLSCQLSSSLRP 339 (1154)
Q Consensus 265 ~~L~~~i~~Ik~~Vd~L~~~~~~~sl~~Le~~l~e~~~li~Eq~siaqsL~----kD~e~V-~kL~dd~~~~~lssS~~s 339 (1154)
..++..++++...+++..... ..++.-+.++....+..+..++... ...+.+ .++.+..
T Consensus 442 ~tLq~~~~~~~~~i~E~~~~l-----~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~----------- 505 (581)
T KOG0995|consen 442 ETLQEHFSNKASTIEEKIQIL-----GEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLK----------- 505 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 566666666666666543211 1122112222222222222222222 222211 0111000
Q ss_pred cccccccCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhh
Q 001114 340 HDAVSALGPMYDVHDKSHLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITY----VSYVIKDAKLQF 407 (1154)
Q Consensus 340 ~davs~Ls~ma~~Htk~lLPsL~~~~~eL~d~l~~~~~~KNeL~~~~~~~Lr~IS~----IQs~I~evk~~L 407 (1154)
+.....|.. .-..+..+-.++..++..|.+-|++...++...++.|+. +|+.|-+.+..+
T Consensus 506 ---l~~~~~m~~-----a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~~ 569 (581)
T KOG0995|consen 506 ---LVLNTSMKE-----AEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKADL 569 (581)
T ss_pred ---HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001110 112355666778888888999999998999988888876 555555555544
No 96
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=55.19 E-value=4.1e+02 Score=35.09 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKA 847 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 847 (1154)
+.+++|...|.+|+.++.+...+|..
T Consensus 399 ~kie~Lee~l~ekd~ql~~~k~Rl~~ 424 (775)
T PF10174_consen 399 KKIENLEEQLREKDRQLDEEKERLSS 424 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44777888888999999998888883
No 97
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=54.96 E-value=12 Score=37.41 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=44.2
Q ss_pred EEecCCcee-EecCCCCCCHHHHHHHHHHHhC-----CC--CCCEEEEecCCccccccccccccCCC
Q 001114 18 HISENGHSF-ELDCNENSPVEAVMRFIESAAG-----IN--FNDQLVLCLDMKLEPQKLLSAYRLPS 76 (1154)
Q Consensus 18 ~~AhtG~~l-~~d~~~f~SVe~LK~~Ia~~t~-----IP--~~~QILLtsgGkl~k~~~L~~Y~l~~ 76 (1154)
|.-..|.-+ .+......+|.+||+-|+..|+ || +++|-|+-+|-.|....+|..|+++-
T Consensus 9 frl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~ 75 (113)
T cd01814 9 FRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPV 75 (113)
T ss_pred EEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcc
Confidence 445556322 1233467899999999998884 44 89999999888888899999998663
No 98
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=54.79 E-value=43 Score=36.61 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=19.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 001114 647 KQMQCVSYEKRIQELEQRLSDQYL 670 (1154)
Q Consensus 647 ~~~~~~~~e~RIr~LE~lL~~Q~~ 670 (1154)
.+....+||+||+.||-+|+.|..
T Consensus 130 r~~e~~~YesRI~dLE~~L~~~n~ 153 (196)
T PF15272_consen 130 RERERIAYESRIADLERQLNSRNN 153 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445566999999999999995544
No 99
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.62 E-value=89 Score=35.27 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=6.4
Q ss_pred hhhhhhhhhhcc
Q 001114 909 VKLRGLFERLRS 920 (1154)
Q Consensus 909 ~r~~gl~~~~~~ 920 (1154)
-++=+.|+|++.
T Consensus 174 ~ell~~yeri~~ 185 (239)
T COG1579 174 PELLSEYERIRK 185 (239)
T ss_pred HHHHHHHHHHHh
Confidence 455555665543
No 100
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=53.70 E-value=37 Score=33.62 Aligned_cols=47 Identities=26% Similarity=0.225 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
+.|.+|...|-....+++.++..|..+++|=+.|+-|.+++++.|.+
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 56788999999999999999999999999999999999999999997
No 101
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=53.42 E-value=48 Score=30.17 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
.-+.+|+.+|+-....|.+|..-+..-..+|..|+++|..+..+|.+.+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777777777777666666666667777777666666666543
No 102
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=52.89 E-value=5e+02 Score=32.75 Aligned_cols=160 Identities=20% Similarity=0.220 Sum_probs=86.8
Q ss_pred hhhHHhhhHHHHHHHHHhhhh------HhHhHHHHHHHHHhhhhhhhhhhhhcc-----------------------ccc
Q 001114 873 CAHLENCLHEAREEAQTHLCA------ADRRASEYSALRASAVKLRGLFERLRS-----------------------CVF 923 (1154)
Q Consensus 873 ~~~~en~~~~~~~~~~~~~~~------~d~~~~~~~~l~~~~~r~~gl~~~~~~-----------------------~~~ 923 (1154)
-.||+|-+.+.+.+-+.+... .-.|..-+..|..+-.||+||-+-+.. .+.
T Consensus 343 ~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~ 422 (582)
T PF09731_consen 343 EEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSALD 422 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777766555554333221 233444455577777777777654443 111
Q ss_pred cCC-cc-cchhhhHHHHHHhhcccCCCCCCcChHHHHHHHHHhhhhh---hhhhhcHHHHHHHhHHHHHHHHHHHHHHHH
Q 001114 924 ASE-GA-GGFADSLRTLAQSLANSISDNEDDGTAEFRKCIRVLADRV---AFLSRHREELLDKNRKVELAHEQLKKELEE 998 (1154)
Q Consensus 924 ~p~-~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~f~~~i~~l~d~v---~fl~~~~~~~~~r~~~~e~~~~~~~ke~~~ 998 (1154)
.+. +. .-|.+.|+.|...-++ | .-..-.|..|..-+ |+++ ++.|..||.+|.....+.---=.+
T Consensus 423 ~~~~~~~~p~~~el~~l~~~~~~------d---~~v~~~l~~l~~~a~~~Gv~s--~~~L~~rf~~v~~~~r~~~l~~~~ 491 (582)
T PF09731_consen 423 SGNAGSPRPFEDELRALKELAPD------D---ELVDAALSSLPPEAAQRGVPS--EAQLRNRFERVAPEVRRASLVPPE 491 (582)
T ss_pred cCCCcCCCCHHHHHHHHHHhCCC------C---hHHHHHHHhcCHHHhhCCCCC--HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 111 22 5677777777555111 1 23344555555322 5777 558999999998776665332255
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccccccccceEEeeccCCcchhhhccCCCcccccc
Q 001114 999 KKELVKTLYTKHQLEKQANKEKISFSRLEVHEIAAFVLNSAGHYEAINRNCSNYYLSA 1056 (1154)
Q Consensus 999 k~~~~~~l~~k~~~~~~~~~~~i~~~~f~~~~~~~f~~~~~~~~~a~n~~~~~y~l~~ 1056 (1154)
..-++--+++++ ..++-|.... +.+ -|...+.+..+.| -.|||..
T Consensus 492 ~~g~~~~~~s~~-------~S~l~~~~~~--~~~--~~~~~d~~~ilar--ae~~l~~ 536 (582)
T PF09731_consen 492 GAGLLGHLLSYL-------FSLLLFRPKG--GEV--DPEGDDVESILAR--AEYYLER 536 (582)
T ss_pred CCCHHHHHHHHH-------HheeeeecCC--CCC--CCCCCCHHHHHHH--HHHHHHC
Confidence 666677777777 4444444333 111 3455566666665 3455543
No 103
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.09 E-value=1.1e+02 Score=39.57 Aligned_cols=224 Identities=21% Similarity=0.168 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhcCccccc---------CcccccccchhhhhHHHHHHHHhccchHHHHHHHHHHHHHHHHhhh
Q 001114 583 ENAKLKAELASAIALICSLCPEMEY---------ESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVS 653 (1154)
Q Consensus 583 ena~l~~el~~~ia~~~~~~~~~~~---------~s~~~~~~~~~~~~a~~~t~~~l~~kde~~~~lq~~~~~~~~~~~~ 653 (1154)
|--||.+++-..|+.+-+-.+++.. ++.++ .--.++. +++.-|--.-+++.+...++...+.
T Consensus 619 ~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~--~~~kyK~-------lI~~lD~~~e~lkQ~~~~l~~e~ee 689 (970)
T KOG0946|consen 619 EFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDD--IQQKYKG-------LIRELDYQIENLKQMEKELQVENEE 689 (970)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHH--HHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH---HHHHHHHHHhhhhccCCCCCcchhhhhhccCCCCCCCCCCCCccccccCCCCCCCcccccccccchhhh
Q 001114 654 YEKRIQEL---EQRLSDQYLMKQKHSNGKDVSDFALLVEKADDCKPESSGGGETHMPCISTSEPMDEVSCVSNSFDAKLA 730 (1154)
Q Consensus 654 ~e~RIr~L---E~lL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1154)
++.-|+.+ =..|-+|+- -.|+.=-+....-+ .|-+.+.
T Consensus 690 L~~~vq~~~s~hsql~~q~~-----------------~Lk~qLg~~~~~~~------------~~~q~~e---------- 730 (970)
T KOG0946|consen 690 LEEEVQDFISEHSQLKDQLD-----------------LLKNQLGIISSKQR------------DLLQGAE---------- 730 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHhcccccchh------------hHHhHHH----------
Q ss_pred hhccCCCCCCCCcccccccccCCCCCCCccccCCcccccCc----------------ccccCCCCcccccccccccCCCc
Q 001114 731 LLNRQPSKGREGVDENMLDSSGMLNPPLDSSMMEPHREELP----------------INEKDGKYKMPGQLGMSMTNSST 794 (1154)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~s~~~~~~ld~~~~~~~~~e~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 794 (1154)
+.++.|+|+. +.+-.+++.++.++..+-.++.-
T Consensus 731 -------------------------------~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~ 779 (970)
T KOG0946|consen 731 -------------------------------ASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAEL 779 (970)
T ss_pred -------------------------------hccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhc
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001114 795 AESMPEPHNILPCDATADSGLDPKVSSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCA 874 (1154)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~ 874 (1154)
..+ ..-...+.....++.+++ +++++.++.++..+++++.++++.+-.+.......|++.-.-|+
T Consensus 780 ~~~--------------~~~~~~~~qeqv~El~~~-l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~ 844 (970)
T KOG0946|consen 780 SQG--------------SLNDNLGDQEQVIELLKN-LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEK 844 (970)
T ss_pred ccc--------------hhhhhhhhHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccc
Q ss_pred hHHhhhHHHHHHHHHhhhhHhHhHHHHHHH
Q 001114 875 HLENCLHEAREEAQTHLCAADRRASEYSAL 904 (1154)
Q Consensus 875 ~~en~~~~~~~~~~~~~~~~d~~~~~~~~l 904 (1154)
-+-|-.. .+--++.+.-.+....++|
T Consensus 845 ~la~e~~----~ieq~ls~l~~~~k~~~nl 870 (970)
T KOG0946|consen 845 NLANELK----LIEQKLSNLQEKIKFGNNL 870 (970)
T ss_pred chhhHHH----HHHHHHHHHHHHhhhhhhH
No 104
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=51.41 E-value=1.6e+02 Score=34.96 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLD 867 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~ 867 (1154)
.+..++..++....++..++.++..+.+++..++++++..+.+++
T Consensus 145 ~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~ 189 (423)
T TIGR01843 145 QLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKE 189 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555544444
No 105
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=50.90 E-value=3.1e+02 Score=33.59 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHH
Q 001114 357 HLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVFREAMVRQDDIFADLKLV 427 (1154)
Q Consensus 357 lLPsL~~~~~eL~d~l~~~~~~KNeL~~~~~~~Lr~IS~IQs~I~evk~~L~~L~e~L~rq~d~F~~L~~V 427 (1154)
+...|.....+|.++-.++...|-.+.+-.=.-|+.|..=|.-+..-...+.-|++.+.+-...|..+.++
T Consensus 251 v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~ 321 (424)
T PF03915_consen 251 VAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777888888888888888888888888888766666655556666777776666777777776
No 106
>PRK09039 hypothetical protein; Validated
Probab=50.82 E-value=1.1e+02 Score=36.22 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001114 824 VLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQM 871 (1154)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~ 871 (1154)
...|+..|.+.....++...++..+.++|+.||..|..++..|++.+.
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555554444444444433
No 107
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=50.77 E-value=1.2e+02 Score=39.47 Aligned_cols=82 Identities=26% Similarity=0.301 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHh--------------hhHHHHH-
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLEN--------------CLHEARE- 885 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en--------------~~~~~~~- 885 (1154)
+.++-.|+..|..|.+++.++|.++..+-.-...=..|.|.+-.-|--.|+--+|||| +|.+||.
T Consensus 551 E~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq 630 (697)
T PF09726_consen 551 ESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQ 630 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888888877433321111133566666667777777788988 5667764
Q ss_pred --HHHHhhhhHhHhHHHHH
Q 001114 886 --EAQTHLCAADRRASEYS 902 (1154)
Q Consensus 886 --~~~~~~~~~d~~~~~~~ 902 (1154)
+++.++-+-|+-+.|+.
T Consensus 631 ~ei~~~~~~~~d~ei~~lk 649 (697)
T PF09726_consen 631 LEIAQGQLRKKDKEIEELK 649 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 108
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.48 E-value=2.4e+02 Score=34.90 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001114 824 VLKLQSALADKSDQLSETQTKLKAVMEEVVMLGR 857 (1154)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 857 (1154)
+.+|+..+.-.++++..-+..|+++.++|.+|+.
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk 369 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQK 369 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777777777777777777776663
No 109
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=50.24 E-value=57 Score=38.44 Aligned_cols=74 Identities=24% Similarity=0.275 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHH
Q 001114 824 VLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEY 901 (1154)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~ 901 (1154)
|..++.++++-.+.+.+.+.+|.....++..+..+|..++..+++.+..-..|++-++ .++.++..|-+...-+
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~----~~~~kl~rA~~Li~~L 289 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIE----ETERKLERAEKLISGL 289 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhccHHHHHhhh
Confidence 3456666666666777777777777777777777777777777666666455555555 7777777776655443
No 110
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=49.27 E-value=2.5e+02 Score=29.21 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001114 826 KLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDES 869 (1154)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~ 869 (1154)
.|.....++.++|..+..|+..+..+|..+...|......++++
T Consensus 25 ~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 25 QLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344444444455555555555555555444444444444444
No 111
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=49.25 E-value=5.4e+02 Score=31.30 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 001114 642 AMLKAKQMQCVSYEKRIQELEQR 664 (1154)
Q Consensus 642 ~~~~~~~~~~~~~e~RIr~LE~l 664 (1154)
..+..+|-++..|.+|.++||+-
T Consensus 62 ~~i~~lqkkL~~y~~~l~ele~~ 84 (395)
T PF10267_consen 62 QTIAQLQKKLEQYHKRLKELEQG 84 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 36677888999999999999864
No 112
>PRK04325 hypothetical protein; Provisional
Probab=48.71 E-value=70 Score=29.63 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
.-+.+|+.+++-..+.|.+|..-+.+-..+|..|++.|..+..+|.+.+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466677777766677766666666666666666666666666665543
No 113
>PRK00736 hypothetical protein; Provisional
Probab=47.51 E-value=78 Score=28.86 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
.-+.+|+.+++-....|.+|..-+.+-..+|..|++.|..+..+|.+.+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467777777777777777777777777777777777777766666543
No 114
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=47.25 E-value=2.5e+02 Score=26.98 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=30.1
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 422 ADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQL 458 (1154)
Q Consensus 422 ~~L~~V~~LP~aYga~LiEvVRRRew~~k~~~~as~L 458 (1154)
.-+..+..-|.-|+..-.|+.+||.|...+......+
T Consensus 60 ~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 60 EAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 4466677789999999999999999999888776653
No 115
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=47.06 E-value=2.5e+02 Score=29.22 Aligned_cols=87 Identities=18% Similarity=0.288 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHH-
Q 001114 825 LKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSA- 903 (1154)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~- 903 (1154)
.+++.++.+......+.+..|..+...+..|..+|+.+...|.+++.. ++++- ...++.-+..||+.-+--
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~-------lee~~-~~~~~~E~l~rriq~LEee 88 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK-------LEESE-KRKSNAEQLNRRIQLLEEE 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHH-HHHHhHHHHHhhHHHHHHH
Confidence 333333333333333334444444444444444444444444444444 33221 222233356666655544
Q ss_pred HHHhhhhhhhhhhhhc
Q 001114 904 LRASAVKLRGLFERLR 919 (1154)
Q Consensus 904 l~~~~~r~~gl~~~~~ 919 (1154)
|..+-.+++-.-++++
T Consensus 89 le~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 89 LEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665555555
No 116
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.68 E-value=1.6e+02 Score=32.00 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAV 848 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 848 (1154)
..+..|++.++...+.+.+++.+|...
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 117
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=46.15 E-value=3.6e+02 Score=27.87 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001114 242 KEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRAS 287 (1154)
Q Consensus 242 d~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~Vd~L~~~~~~ 287 (1154)
+...+++....+ ..|...+......+..+......|......
T Consensus 137 ~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (213)
T cd00176 137 DLESVEELLKKH----KELEEELEAHEPRLKSLNELAEELLEEGHP 178 (213)
T ss_pred CHHHHHHHHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHcCCC
Confidence 344555444443 444555555566667777777777655433
No 118
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.00 E-value=75 Score=36.35 Aligned_cols=61 Identities=11% Similarity=0.242 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhh
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCL 880 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~ 880 (1154)
.+..+.++++.+..-.++|+.+.+++..++.++..++.|.+.++..+.+.+..-+-++|.+
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666666665555544444433
No 119
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=45.57 E-value=82 Score=29.19 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q 001114 643 MLKAKQMQCVSYEKRIQELEQRLSD 667 (1154)
Q Consensus 643 ~~~~~~~~~~~~e~RIr~LE~lL~~ 667 (1154)
+-..-.+...-.+.||+.||+.|.+
T Consensus 47 eY~aAke~q~~le~rI~~Le~~l~~ 71 (74)
T PF03449_consen 47 EYHAAKERQAFLEARIRELEERLAR 71 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445566677889999999999975
No 120
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.83 E-value=2.5e+02 Score=29.88 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~ 872 (1154)
++.+++..+.+..+++++++.++.....++..++......++.+...++.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 131 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEER 131 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44444555555555555555555555555554444444444444444444
No 121
>PRK00295 hypothetical protein; Provisional
Probab=44.80 E-value=93 Score=28.36 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDES 869 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~ 869 (1154)
-+.+|+.+++-..+.|.+|..-+.+-.++|..|++.|..+..+|.+.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777777777777776666666666777777766666666554
No 122
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.49 E-value=1e+02 Score=40.35 Aligned_cols=72 Identities=26% Similarity=0.266 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRAS 899 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~ 899 (1154)
..+.+|=.+|.+...++.+....+....+|+..++.+|+.-...|++- -+..+.+||++|+.-+..|-+.+.
T Consensus 511 ~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~------~~~~~~~a~~ea~~~~~~a~~~~~ 582 (771)
T TIGR01069 511 EEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER------ERNKKLELEKEAQEALKALKKEVE 582 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555666666666665555555442 455777777777766666654443
No 123
>PRK00846 hypothetical protein; Provisional
Probab=44.39 E-value=91 Score=29.30 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
+.-+.+|+.+++-....|.++..-+.+...+|..|++.|..+..+|.+.+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888888888888888888888888888888888888888765
No 124
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=44.15 E-value=5.9e+02 Score=29.86 Aligned_cols=44 Identities=16% Similarity=0.010 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001114 243 EEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRA 286 (1154)
Q Consensus 243 ~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~Vd~L~~~~~ 286 (1154)
..+++.....+..+...+..++...+..+.-+....+.+....|
T Consensus 135 ~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~~P 178 (342)
T cd08915 135 VTKLRGYLEQASNSDNEVLQCYESIDPNLVLLCGGYKELKAFIP 178 (342)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCChHHHHHhCC
Confidence 46788888889999999999999998888888777777665554
No 125
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=43.51 E-value=5.4e+02 Score=29.26 Aligned_cols=159 Identities=15% Similarity=0.170 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001114 144 HRGHAIYIRTQAKIEMCERLLREQKVQERAVEVGR-GN------LEQY---YRVINQNYNDFMKRYSQQQRVHSDLLANF 213 (1154)
Q Consensus 144 ~~A~AL~~~a~~~~e~ce~Lv~Ei~vq~raL~aAv-aN------Le~~---~~~lek~f~ef~~~~~qll~~~~~LL~~w 213 (1154)
-|...|....+.+.+.|. |.-||+-.+ .| |..- +..-+++.+.-..|+..++++...+|..|
T Consensus 82 kWs~el~~Qe~vF~~q~~--------qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~l 153 (254)
T KOG2196|consen 82 KWSLELEEQERVFLQQAT--------QVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPL 153 (254)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777766666666554 444554322 11 1111 12234555556667777777778888888
Q ss_pred HHHHHHhhcCCCCcccccccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CChhh
Q 001114 214 GRDIEKLRSVKLHPSLQTATCKCLLDFVKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRAS-LPIKN 292 (1154)
Q Consensus 214 e~dLe~Lr~IpIhpaL~~e~~~TL~DfVd~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~Vd~L~~~~~~-~sl~~ 292 (1154)
|.-++.+..-- +.--.|+++. +.-.....|+.++..+...++.|-..+..+-..... ..+-.
T Consensus 154 E~k~~~~~g~~------------~~~~~D~eR~-----qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~q 216 (254)
T KOG2196|consen 154 ETKLELQSGHT------------YLSRADVERE-----QTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQ 216 (254)
T ss_pred HHHHhccccch------------hhhhhhHHHH-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHH
Confidence 87776543321 1112333333 233344566777766666666555444444332211 11223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhc
Q 001114 293 LEMMIKEHQRFINEQKSIMQSLSKDVSTVKKLVDD 327 (1154)
Q Consensus 293 Le~~l~e~~~li~Eq~siaqsL~kD~e~V~kL~dd 327 (1154)
+...+.-|..-++-+....-++.+-++.+.++.++
T Consensus 217 i~Kilnah~~sLqwl~d~st~~e~k~d~i~K~~~~ 251 (254)
T KOG2196|consen 217 IEKILNAHMDSLQWLDDNSTQLEKKLDKIKKLKDD 251 (254)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 44443333333333444444555566666666553
No 126
>PRK02119 hypothetical protein; Provisional
Probab=43.41 E-value=95 Score=28.72 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
+.-+.+|+.+++-..+.|.+|..-+.+-.++|..|+++|..+...|.+.+
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566777777777777777777777777777777777777666666543
No 127
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=42.90 E-value=36 Score=36.26 Aligned_cols=45 Identities=29% Similarity=0.398 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHH
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQT 889 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~ 889 (1154)
|.++|.|++.+++.-+.|..||+.-..|..|+|- |.+|+|++-|-
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QR-------LkDE~RDLKqE 46 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQR-------LKDELRDLKQE 46 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 6789999999999999999999886667777664 57788776553
No 128
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.03 E-value=2.3e+02 Score=26.78 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001114 837 QLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQM 871 (1154)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~ 871 (1154)
-++.+|+|+..+++.|+-|+-|++.++.+=.....
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999988776554443
No 129
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=41.67 E-value=1.1e+02 Score=30.03 Aligned_cols=52 Identities=27% Similarity=0.277 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhh
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAV--MEEVVMLGRELEMRQKLLDESQM 871 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~el~~~~~~l~e~~~ 871 (1154)
+...+..|+..++..+..++.+|.++..+ .++|..|+-++...+..+++...
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 56778889999999999999999998888 77788887777777766665443
No 130
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=41.62 E-value=5.3e+02 Score=34.79 Aligned_cols=92 Identities=20% Similarity=0.169 Sum_probs=72.8
Q ss_pred CCCchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHh
Q 001114 816 DPKVSSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAAD 895 (1154)
Q Consensus 816 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d 895 (1154)
++++=.+.++.|+..+-+-.+++.++++--|.++.|-..|..|..+.+.-+++-+--|-|+--+++ .+|
T Consensus 409 e~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls-----------~~~ 477 (1195)
T KOG4643|consen 409 EHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLS-----------LQD 477 (1195)
T ss_pred HhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH-----------HHH
Confidence 335556889999999999999999999999999999999999999888877766555555555554 677
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhccc
Q 001114 896 RRASEYSALRASAVKLRGLFERLRSC 921 (1154)
Q Consensus 896 ~~~~~~~~l~~~~~r~~gl~~~~~~~ 921 (1154)
++..+|+.|+. +++-|.++|++.
T Consensus 478 Q~~~et~el~~---~iknlnk~L~~r 500 (1195)
T KOG4643|consen 478 QLEAETEELLN---QIKNLNKSLNNR 500 (1195)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHH
Confidence 78888887775 477888887754
No 131
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=41.60 E-value=60 Score=34.24 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=18.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 001114 647 KQMQCVSYEKRIQELEQRLSDQYL 670 (1154)
Q Consensus 647 ~~~~~~~~e~RIr~LE~lL~~Q~~ 670 (1154)
..+...-.|.||+.||.+|.+-..
T Consensus 52 ak~~q~~~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 52 RADELARLDDRINELDRRLRTGPT 75 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCEE
Confidence 344455689999999999997654
No 132
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=41.28 E-value=5.6e+02 Score=28.76 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCccc
Q 001114 167 QKVQERAVEVGRGNLEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSL 229 (1154)
Q Consensus 167 i~vq~raL~aAvaNLe~~~~~lek~f~ef~~~~~qll~~~~~LL~~we~dLe~Lr~IpIhpaL 229 (1154)
-+.|.+-++-.++|.+.|+..+...|..+...-..+++..+.|.. +-.+|..-..+++...|
T Consensus 9 rd~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak-~l~~yA~~E~~~l~~~L 70 (219)
T PF06730_consen 9 RDSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAK-QLQDYANTENPNLKLGL 70 (219)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH-HHHHHHhcCCccHhhHH
Confidence 345667778889999999999999999999988888877655444 44666665655554444
No 133
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=41.20 E-value=1.6e+02 Score=33.33 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=56.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhc-ccccccccccccceEEeeccCCcchhhhccCCCccc
Q 001114 980 DKNRKVELAHEQLKKELEEKKELVKTLYTKHQLEK-----QAN-KEKISFSRLEVHEIAAFVLNSAGHYEAINRNCSNYY 1053 (1154)
Q Consensus 980 ~r~~~~e~~~~~~~ke~~~k~~~~~~l~~k~~~~~-----~~~-~~~i~~~~f~~~~~~~f~~~~~~~~~a~n~~~~~y~ 1053 (1154)
..+.++..-+++|++|+.+.+.++..+- .++.|. .-+ +.... .++-.-.+...-|++...+.-||+|..+=
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~-~l~~en~~L~~lL~~~~~~~-~~~i~A~Vi~~~~~~~~~~i~Id~G~~~G- 145 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELE-QLEAENARLRELLNLKESLD-YQFITARVISRSPDPWSQQVTIDKGSNDG- 145 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCcccCC-CceEEEEEEEeCCCCceeEEEEccCcccC-
Confidence 3455666666777777766655555331 111111 111 12222 26677777777788778888889876442
Q ss_pred ccchhhhhhccCCCCCCCcEEEEEEEEeeeccc
Q 001114 1054 LSAESVALFTDNLPRRPSYIVGQIVHIERQTAK 1086 (1154)
Q Consensus 1054 l~~e~~~~~~~~~~~~~~~i~g~i~~i~~~~~~ 1086 (1154)
+.....-+ .+.++||+|+....++++
T Consensus 146 v~~g~~Vv-------~~~GlVG~V~~v~~~~s~ 171 (276)
T PRK13922 146 VKKGMPVI-------DPGGLVGRVIEVSPNTSR 171 (276)
T ss_pred CCCCCceE-------cCCCCeEEEEEECCCeeE
Confidence 22221112 467899999999888776
No 134
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=41.05 E-value=5.8e+02 Score=28.91 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001114 243 EEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRAS 287 (1154)
Q Consensus 243 ~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~Vd~L~~~~~~ 287 (1154)
..+++.....+..+...+..++......+.-+....+.|....|.
T Consensus 86 l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~ 130 (296)
T PF13949_consen 86 LQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPS 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCC
Confidence 467777788888888999999999888888887777776554443
No 135
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=40.03 E-value=2.9e+02 Score=31.09 Aligned_cols=50 Identities=10% Similarity=0.241 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~ 872 (1154)
.+..++..+..+...+..++..+....++|...+++++..+..|......
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555444444443
No 136
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.99 E-value=6.3e+02 Score=28.97 Aligned_cols=175 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASE 900 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~ 900 (1154)
...-...+..|.+--.+|+++...-..+.-++.+|+.|++..+.++++....|..+|+=++..|......-.+-...=++
T Consensus 46 ~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~ 125 (312)
T PF00038_consen 46 SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQ 125 (312)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Q ss_pred HHHHHH--------hhhhhhhhhhhhccccccCC-cc--cchhhhHHHHHHhhcccCCCCCCcChHHHHHHHHHhh-hhh
Q 001114 901 YSALRA--------SAVKLRGLFERLRSCVFASE-GA--GGFADSLRTLAQSLANSISDNEDDGTAEFRKCIRVLA-DRV 968 (1154)
Q Consensus 901 ~~~l~~--------~~~r~~gl~~~~~~~~~~p~-~~--~~~~~~l~~~~~~l~~~~~~~~~~~~~~f~~~i~~l~-d~v 968 (1154)
+-.|.. .--.|+.|..+....++... ++ ..+...|+.+ -.+|...+.--- |=-
T Consensus 126 i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~ei---------------R~~ye~~~~~~~~e~e 190 (312)
T PF00038_consen 126 IQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREI---------------RAQYEEIAQKNREELE 190 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHH---------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhH---------------HHHHHHHHhhhhhhhh
Q ss_pred hhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 969 AFLSRHREELLDKNRKVELAHEQLKKELEEKKELVKTLYTKH 1010 (1154)
Q Consensus 969 ~fl~~~~~~~~~r~~~~e~~~~~~~ke~~~k~~~~~~l~~k~ 1010 (1154)
.....+..++.............++-|+..-+..|..|-.++
T Consensus 191 ~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el 232 (312)
T PF00038_consen 191 EWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAEL 232 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhh
No 137
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=39.74 E-value=8.2e+02 Score=33.81 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=9.6
Q ss_pred cccchhhhHHHHHHh
Q 001114 927 GAGGFADSLRTLAQS 941 (1154)
Q Consensus 927 ~~~~~~~~l~~~~~~ 941 (1154)
++.+|.|-+.-|-.+
T Consensus 582 ~~~~~~d~l~~le~~ 596 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEES 596 (1317)
T ss_pred ccccHHHHHHHHHHH
Confidence 567777777755444
No 138
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.61 E-value=2.2e+02 Score=36.10 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=41.4
Q ss_pred CCCCCchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 814 GLDPKVSSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLD 867 (1154)
Q Consensus 814 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~ 867 (1154)
.-+-....+.+.++..+++.-..++++|+..|..+..||.+|+++|+..+...+
T Consensus 414 ~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 414 RREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677888888888888888888888888888888888888886655444
No 139
>PRK04406 hypothetical protein; Provisional
Probab=39.59 E-value=1.2e+02 Score=28.32 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
-+.+|+.+++-..+.|.+|..-+.+-..+|..|+++|..+..+|.+
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555544444444455555555544444443
No 140
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.47 E-value=3.3e+02 Score=30.56 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=6.3
Q ss_pred cccccccceEEeeccC
Q 001114 1023 FSRLEVHEIAAFVLNS 1038 (1154)
Q Consensus 1023 ~~~f~~~~~~~f~~~~ 1038 (1154)
+.-|-+|=+++|+.|+
T Consensus 184 V~~LrlGr~~l~~~t~ 199 (251)
T PF11932_consen 184 VDFLRLGRVALYYQTL 199 (251)
T ss_pred EEEEeecchhheeECC
Confidence 3333334444444443
No 141
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.31 E-value=94 Score=33.02 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEA 887 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~ 887 (1154)
...++..+..+.+++..|..|++.+.+.+...++|-.-|=+.|+.||-.+
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666777777777888888888889444456778887765
No 142
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=38.79 E-value=1.1e+02 Score=27.44 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=17.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 834 KSDQLSETQTKLKAVMEEVVMLGRELEMRQ 863 (1154)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~l~~el~~~~ 863 (1154)
-..+|.+.+.+...+..||..|+.|++.++
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555556666666666666666666554
No 143
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.77 E-value=73 Score=36.25 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~ 872 (1154)
+.-+..|+..+......+.+|..+|..+..||+.||-.+|..+..|++.+..
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999888888766554
No 144
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.25 E-value=1.4e+02 Score=27.61 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=8.8
Q ss_pred HHHHHHhhhhhhHHHH
Q 001114 827 LQSALADKSDQLSETQ 842 (1154)
Q Consensus 827 l~~~~~~~~~~~~~~~ 842 (1154)
|.++|.+||.+|.++.
T Consensus 3 l~~~l~EKDe~Ia~L~ 18 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLM 18 (74)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 4555556665555544
No 145
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=37.85 E-value=3.8e+02 Score=30.82 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENC 879 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~ 879 (1154)
...+..++..+.....++..++..+..+..++..++..++..+..++..+.+-..++.+
T Consensus 79 ~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L 137 (334)
T TIGR00998 79 ELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPL 137 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566667777777777777777777777777777766766666666655554444433
No 146
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=37.48 E-value=7.5e+02 Score=29.14 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 001114 243 EEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLP 289 (1154)
Q Consensus 243 ~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~Vd~L~~~~~~~s 289 (1154)
..+++...+.+..+...+..++......+.-+....+.+....|.++
T Consensus 133 ~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iPs~~ 179 (337)
T cd09234 133 LKKYKEAHEKASQSNTELHKAMNLHIANLKLLAGPLDELQKKLPSPS 179 (337)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHhhCCCcc
Confidence 35777788888889999999999999888888777777776655543
No 147
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.44 E-value=1.2e+02 Score=38.22 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEE----------VVMLGRELEMRQKLLDESQMNCAHLENCLH 881 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~~el~~~~~~l~e~~~~~~~~en~~~ 881 (1154)
.++.+|+..+++....+..|+++|..+-.+ |..+.++++.+...|.|.-+---.||+-|.
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777766666554 444555555555555554444333444333
No 148
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=37.36 E-value=69 Score=37.45 Aligned_cols=39 Identities=31% Similarity=0.346 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHH
Q 001114 845 LKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEA 883 (1154)
Q Consensus 845 ~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~ 883 (1154)
+..+.+++..+..||+-+++.|.=.|+.|+-||-+|.+|
T Consensus 184 ~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLdda 222 (323)
T PF08537_consen 184 IDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDA 222 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444455566677788888999999999999999833
No 149
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=37.34 E-value=5.4e+02 Score=30.44 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=24.4
Q ss_pred hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001114 630 LHLKDEYGKHIQAMLKAKQMQCVSYEKRIQELEQ 663 (1154)
Q Consensus 630 l~~kde~~~~lq~~~~~~~~~~~~~e~RIr~LE~ 663 (1154)
|.+|-|.+..|..+++.-+..-..|+-.+-.|..
T Consensus 4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqe 37 (319)
T PF09789_consen 4 LQSKSEALLILSQELEKCQSERDQYKLMAEQLQE 37 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777778888888887888777766653
No 150
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.15 E-value=1.1e+03 Score=30.99 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=16.6
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 351 DVHDKSHLPRMQACDRSISKLLDFCQDKKNE 381 (1154)
Q Consensus 351 ~~Htk~lLPsL~~~~~eL~d~l~~~~~~KNe 381 (1154)
..|.+.+--.|.+...+|.+++..+...|+.
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445556666666666666555544
No 151
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=36.86 E-value=1.8e+02 Score=30.01 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 001114 820 SSELVLKLQSALADKSDQLSETQTK--LKAVMEEVVMLGRELEMRQKLL 866 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~el~~~~~~l 866 (1154)
+.+.|+.|=+.|+.+.+.+.+++.. ...+...+..|+.+|+...+.+
T Consensus 65 nP~tvLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 65 NPATVLALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999977 8888888999999999888777
No 152
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.74 E-value=99 Score=28.13 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=40.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHH
Q 001114 835 SDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEARE 885 (1154)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~ 885 (1154)
.+.|.+||.||.....-|..|...+-.-+..+|..+.-|.+|...|.+.+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457889999999888889999999999999999999999999988886553
No 153
>PHA02940 hypothetical protein; Provisional
Probab=36.64 E-value=7e+02 Score=28.56 Aligned_cols=147 Identities=20% Similarity=0.218 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-----------hhhHHhhhHHHHHHHHHhh---------hhHhHhHHHHHHHHHhhhhh
Q 001114 852 VVMLGRELEMRQKLLDESQMN-----------CAHLENCLHEAREEAQTHL---------CAADRRASEYSALRASAVKL 911 (1154)
Q Consensus 852 ~~~l~~el~~~~~~l~e~~~~-----------~~~~en~~~~~~~~~~~~~---------~~~d~~~~~~~~l~~~~~r~ 911 (1154)
+..|+.||+-+++.+.++..- -+-|+--+.+|||-+..-. ..-|+-+.=|.+|++|..=+
T Consensus 37 addLraeLeyI~kEi~~~~~~~ksVkeaielt~siL~~yy~~a~e~~k~Ls~Ay~kN~i~smF~nai~lYAnL~ainal~ 116 (315)
T PHA02940 37 ADDLRAELEYIQKEIVESYSITKSVKEAIELTYSILTDYYNDAKEKSKLLSDAYNKNAIKSMFDNAIELYANLAAINALL 116 (315)
T ss_pred hhhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHH
Confidence 778888888777765554332 2345566677777655422 22345555566688777444
Q ss_pred hhhhhhhcc--ccccCCcccchh----hhHHHHHHhhcccCCCCCCcChHHHHHHHHHhhhh-hhhhhhcHHHHHHHhHH
Q 001114 912 RGLFERLRS--CVFASEGAGGFA----DSLRTLAQSLANSISDNEDDGTAEFRKCIRVLADR-VAFLSRHREELLDKNRK 984 (1154)
Q Consensus 912 ~gl~~~~~~--~~~~p~~~~~~~----~~l~~~~~~l~~~~~~~~~~~~~~f~~~i~~l~d~-v~fl~~~~~~~~~r~~~ 984 (1154)
+=.++-... -.+.| -...|. |.+-.||.....-++.++++ -.++-|.-- ..|.. +.+.-++
T Consensus 117 ~~i~~~ik~~~~~t~~-~~i~FtqkA~dtv~~la~~yvq~vk~d~r~------~~a~~l~keLs~~~d-----~~enepd 184 (315)
T PHA02940 117 RLIRSFIKPEPTLTTP-LFIDFTQKAKDTVILLAGRYVQDVKKDDRR------TIANKLSKELSWTID-----YQENEPD 184 (315)
T ss_pred HHHHHhCCCCCCcCch-HHHHHHHHhhhHHHHHHHHHHHHccccHHH------HHHHHHHhhhhHHHH-----HHhcCcc
Confidence 433332211 11222 224443 34444555544433433331 112222211 12444 6778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 985 VELAHEQLKKELEEKKELVKTLYTKH 1010 (1154)
Q Consensus 985 ~e~~~~~~~ke~~~k~~~~~~l~~k~ 1010 (1154)
||+.-+..+-++|+|.++-+--|.-+
T Consensus 185 le~d~keie~~lE~~~dl~rGtY~vL 210 (315)
T PHA02940 185 LESDFKEIEEELEEKDDLSRGTYKVL 210 (315)
T ss_pred hhhhHHHHHHHHhccchhhhhHHHHH
Confidence 99999999999999999877666544
No 154
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.13 E-value=1.7e+02 Score=38.61 Aligned_cols=72 Identities=28% Similarity=0.373 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRAS 899 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~ 899 (1154)
..+++|=..|.++-.++.+....+....+|+..++++|+.-...|++ +.+..+.+|+++|+.-+..|-+.+.
T Consensus 516 ~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~------~~~~~~~~~~~~a~~~l~~a~~~~~ 587 (782)
T PRK00409 516 EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQE------EEDKLLEEAEKEAQQAIKEAKKEAD 587 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555556666666666666666655555543 2556777777777766655554443
No 155
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=36.04 E-value=1.3e+02 Score=39.40 Aligned_cols=141 Identities=21% Similarity=0.262 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLK----AVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADR 896 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~ 896 (1154)
...+..||--..+-+..|.+.=..+- +++.||..++.|...++..+...+.+ ..++++
T Consensus 37 s~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~------------------~~~~e~ 98 (766)
T PF10191_consen 37 SSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEE------------------IKAVEQ 98 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH------------------Hhhhhc
Q ss_pred hHHHHHHHHHhh--hhhhhhhhhhccccccCCcccchhhhHHHHHHhhcccCCCCCCcChHHHHHHHHHhhhhhhhhhhc
Q 001114 897 RASEYSALRASA--VKLRGLFERLRSCVFASEGAGGFADSLRTLAQSLANSISDNEDDGTAEFRKCIRVLADRVAFLSRH 974 (1154)
Q Consensus 897 ~~~~~~~l~~~~--~r~~gl~~~~~~~~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~f~~~i~~l~d~v~fl~~~ 974 (1154)
-.. .+|. .++...++|+..|-.+--.+.+|..-...+-.-+.+.-=..-.+...+.++|+.+|.| +-
T Consensus 99 ~t~-----~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~----~p-- 167 (766)
T PF10191_consen 99 DTA-----QSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQD----VP-- 167 (766)
T ss_pred cHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC----CC--
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 001114 975 REELLDKNRKVELAHEQL 992 (1154)
Q Consensus 975 ~~~~~~r~~~~e~~~~~~ 992 (1154)
+-.+|.+-+|++..||
T Consensus 168 --d~~~r~~~le~l~nrL 183 (766)
T PF10191_consen 168 --DYEERRQQLEALKNRL 183 (766)
T ss_pred --chhHHHHHHHHHHHHH
No 156
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=35.35 E-value=8.7e+02 Score=29.29 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhccCchhhhccCCCCCCCCccccccCCCCCCCccCCHHHHHhhhh
Q 001114 468 VEVRRREEFLKANSVYIPRDILGSMGLYDTPNQCDVNIAPSDTNLLDIDISDLEVYAP 525 (1154)
Q Consensus 468 eE~kRRekf~K~~G~~LP~dL~~~~GL~d~PP~~evnl~~~D~~LP~I~r~Dle~yi~ 525 (1154)
+-..||=.|.+..-.-+=.. ++ .--||.|.|.-. .-...-.+||+||...+.
T Consensus 244 d~i~RRy~Wfkr~L~~~e~~-~~----~iFP~~W~v~~~-L~~~Fc~~Tr~dL~~iL~ 295 (383)
T PF04100_consen 244 DNIDRRYAWFKRLLKNFEEK-FA----NIFPPSWRVPER-LCVEFCEITRKDLSEILS 295 (383)
T ss_pred hhHHHHHHHHHHHHHHHHhh-cc----ccCCCcCcHHHH-HHHHHHHHHHHHHHHHHh
Confidence 44566666666543333111 00 112556655321 112455678888877764
No 157
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=35.34 E-value=2.3e+02 Score=32.11 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHH-HHHhh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVM---------EEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREE-AQTHL 891 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~-~~~~~ 891 (1154)
+.+....++|+.+-=.++-.+++++++. ..+..|+.|++....++++|+++ ++..|-+-.+. +.--.
T Consensus 121 k~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~---~~~~M~~~l~~E~e~~~ 197 (244)
T cd07595 121 PNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDA---LATDMYEFLAKEAEIAS 197 (244)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHccHHHHH
Confidence 5666666777777777777788887653 56788999999999999999999 88888765444 43333
Q ss_pred hhHhHhHHHHHHHHHhh
Q 001114 892 CAADRRASEYSALRASA 908 (1154)
Q Consensus 892 ~~~d~~~~~~~~l~~~~ 908 (1154)
+=.+-....++--|.+.
T Consensus 198 ~l~~lv~aQl~YH~~a~ 214 (244)
T cd07595 198 YLIDLIEAQREYHRTAL 214 (244)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 158
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=34.72 E-value=8.8e+02 Score=29.14 Aligned_cols=36 Identities=11% Similarity=0.259 Sum_probs=26.2
Q ss_pred ccc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 238 LDF-VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDD 273 (1154)
Q Consensus 238 ~Df-Vd~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~ 273 (1154)
.|| ...+.|++....+..........+.+|...+..
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~ 252 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK 252 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 688 667788888888888887777777776655543
No 159
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=34.56 E-value=1.6e+02 Score=36.42 Aligned_cols=69 Identities=25% Similarity=0.286 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhhhhhhhhhHHh
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELE---------------------MRQKLLDESQMNCAHLEN 878 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~---------------------~~~~~l~e~~~~~~~~en 878 (1154)
-+..+.-+++.|+.|+++++.....++.++.++..+++++- .....+.|.|.--|-.+-
T Consensus 210 tN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~ 289 (596)
T KOG4360|consen 210 TNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQ 289 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888888877777777777666665544 555667777777666777
Q ss_pred hhHHHHHHHH
Q 001114 879 CLHEAREEAQ 888 (1154)
Q Consensus 879 ~~~~~~~~~~ 888 (1154)
-+|||-|+-+
T Consensus 290 ~~~EaeeELk 299 (596)
T KOG4360|consen 290 MLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHH
Confidence 7787777654
No 160
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=34.22 E-value=61 Score=40.68 Aligned_cols=81 Identities=21% Similarity=0.161 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhccCC----CCCcchhhhhhccCCCCCCCCCCCCccccccC
Q 001114 635 EYGKHIQAMLKAKQMQCVSYEKRIQELEQRLSDQYLMKQKHSNG----KDVSDFALLVEKADDCKPESSGGGETHMPCIS 710 (1154)
Q Consensus 635 e~~~~lq~~~~~~~~~~~~~e~RIr~LE~lL~~Q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1154)
+++..+=+++..++.--+.+++|||++|.+|.++..+++.-.+. -|+..-+ +..+ -.+...+...-
T Consensus 370 ~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~~~~~~~~~~~~~~~~~~~--t~~a--------l~~~~~~~~~~ 439 (557)
T PF01763_consen 370 GQINNQFDTIEDLKEENQDLEKKLRELESELSRYREEAQRAPQSAADDANLLTSD--TLEA--------LRKVLDHELID 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccccccc--HHHH--------HHhhccccccc
Confidence 46777778888889999999999999999999999875443331 1221111 1111 01112233445
Q ss_pred CCCCCCccccccccc
Q 001114 711 TSEPMDEVSCVSNSF 725 (1154)
Q Consensus 711 ~~~~~~~~~~~~~~~ 725 (1154)
.+.+|++...+.|||
T Consensus 440 ~s~~~~d~~~VaNSF 454 (557)
T PF01763_consen 440 VSSSMDDNRYVANSF 454 (557)
T ss_pred cccccCCCCeeeecc
Confidence 666888888888886
No 161
>PRK02793 phi X174 lysis protein; Provisional
Probab=33.80 E-value=1.7e+02 Score=27.04 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
-+.+|+.+++-..+.|.+|..-+.+-..+|..|+++|..+..+|.+
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555555555544444443
No 162
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=33.35 E-value=9.4e+02 Score=29.04 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 001114 297 IKEHQRFINEQKSIMQSLSKDVSTV 321 (1154)
Q Consensus 297 l~e~~~li~Eq~siaqsL~kD~e~V 321 (1154)
+.+.+....+-+..++.|.+|+..+
T Consensus 73 i~~ik~kA~~sE~~V~~it~dIk~L 97 (383)
T PF04100_consen 73 ISEIKSKAEESEQMVQEITRDIKQL 97 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555566666666554
No 163
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=33.23 E-value=1.7e+02 Score=27.88 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=16.7
Q ss_pred hHhHhHHHHHHHHHhhhhhhhhhhhhc
Q 001114 893 AADRRASEYSALRASAVKLRGLFERLR 919 (1154)
Q Consensus 893 ~~d~~~~~~~~l~~~~~r~~gl~~~~~ 919 (1154)
.+=+..-|||.++-.|-++=|+.-=.+
T Consensus 40 ~hI~lLheYNeiKD~gQ~Lig~iA~~r 66 (83)
T PF07061_consen 40 RHIKLLHEYNEIKDIGQGLIGLIADQR 66 (83)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 334567799998888855444443333
No 164
>PF11433 DUF3198: Protein of unknown function (DUF3198); InterPro: IPR024504 This domain is found at the C-terminal of a family of archaeal proteins annotated as membrane proteins.; PDB: 1X9B_A.
Probab=33.14 E-value=53 Score=27.98 Aligned_cols=29 Identities=41% Similarity=0.344 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 001114 852 VVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEA 887 (1154)
Q Consensus 852 ~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~ 887 (1154)
|.+| .|||.+..+|+++ |+|.|+||.+.=
T Consensus 20 v~nL-~ELE~is~rlg~~------Y~~~LeeaK~kW 48 (51)
T PF11433_consen 20 VRNL-TELERISKRLGKS------YQIRLEEAKEKW 48 (51)
T ss_dssp HHHH-HHHHHHHHHH-SH------HHHHHHHHHHHH
T ss_pred HHhH-HHHHHHHHHHchH------HHHHHHHHHHhh
Confidence 4444 5899999999976 999999887753
No 165
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=33.13 E-value=69 Score=31.44 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHHHH-------HHHHhhcCcccccCcccccccchhhhhHHHHHHHHhccchHHHHHHHHHHHHHHHHhhh
Q 001114 581 EVENAKLKAELASA-------IALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVS 653 (1154)
Q Consensus 581 e~ena~l~~el~~~-------ia~~~~~~~~~~~~s~~~~~~~~~~~~a~~~t~~~l~~kde~~~~lq~~~~~~~~~~~~ 653 (1154)
++|-.-||-||.+. ...+-+.+..|...-+++-.+..++..--. .-|..+..+.-|-.-+++-+.-+.+
T Consensus 11 ~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~~~~----i~Rt~~Qvv~~l~RRiDYV~~Ni~t 86 (99)
T PF13758_consen 11 EAEYEGLKEEIEALPEDDDATREDLLRIRRDFGGSLVTEKEIKEILGEGQG----ITRTREQVVDVLSRRIDYVQQNIET 86 (99)
T ss_pred HHHHHHHHHHHHhccccCCCCHHHHHHHHHhcCcccccHHHHHHHhCCCCC----CCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777887777 345666677788666654333333332111 1133677888888999999999999
Q ss_pred HHHHHHHHHHHHH
Q 001114 654 YEKRIQELEQRLS 666 (1154)
Q Consensus 654 ~e~RIr~LE~lL~ 666 (1154)
+++||..-|+.|+
T Consensus 87 leKql~~aE~kla 99 (99)
T PF13758_consen 87 LEKQLEAAENKLA 99 (99)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999874
No 166
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=32.72 E-value=4.8e+02 Score=29.37 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=11.4
Q ss_pred cChHHHHHHHHHhhhhhhhhh
Q 001114 952 DGTAEFRKCIRVLADRVAFLS 972 (1154)
Q Consensus 952 ~~~~~f~~~i~~l~d~v~fl~ 972 (1154)
.+...|..-+..|.-||..|-
T Consensus 252 ~~~~~f~~~v~lLn~nI~~L~ 272 (302)
T PF10186_consen 252 VDRQRFEYAVFLLNKNIAQLC 272 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666665444
No 167
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=32.65 E-value=1.6e+02 Score=30.46 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHH
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYS 902 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~ 902 (1154)
-+.+|..-+....+.+.....+|+.+.+++..|++--..+...|.++...=.+|--.+ =+.+.-..
T Consensus 31 GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~--------------l~v~~~~e 96 (141)
T PF13874_consen 31 GFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRL--------------LRVLRKQE 96 (141)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 4566666666777777777777777777766665554455555555444411111111 11223333
Q ss_pred HHHHhhh-------hhhhhhhhhccccccCCcccchhhhHH
Q 001114 903 ALRASAV-------KLRGLFERLRSCVFASEGAGGFADSLR 936 (1154)
Q Consensus 903 ~l~~~~~-------r~~gl~~~~~~~~~~p~~~~~~~~~l~ 936 (1154)
.||..|. .+++=++.+..-+.+|++..|-.++|.
T Consensus 97 ilr~~g~~l~~eEe~L~~~le~l~~~l~~p~~~~~rl~El~ 137 (141)
T PF13874_consen 97 ILRNRGYALSPEEEELRKRLEALEAQLNAPAQLKGRLNELW 137 (141)
T ss_dssp HHHH-------------------------------------
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 5777773 334444444556678866777777765
No 168
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=32.64 E-value=51 Score=30.90 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=30.7
Q ss_pred eeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecC---Ccc--ccccccccccCCCCCceEEEE
Q 001114 25 SFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD---MKL--EPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 25 ~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsg---Gkl--~k~~~L~~Y~l~~denEIFVF 84 (1154)
+..+++....++.+|++.|+..++||...+.|.... +.+ ...++|..+++.+. .=|||+
T Consensus 15 ~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHG-dmlyL~ 78 (80)
T PF11543_consen 15 MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHG-DMLYLK 78 (80)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT--EEE--
T ss_pred CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCc-cEEEEe
Confidence 345556678899999999999999999998887652 222 23567777766532 345554
No 169
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=32.28 E-value=1e+03 Score=29.23 Aligned_cols=160 Identities=10% Similarity=0.203 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCChhhHHHH-----HHHHHHH---HHHHHHHHH
Q 001114 244 EHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTR---ASLPIKNLEMM-----IKEHQRF---INEQKSIMQ 312 (1154)
Q Consensus 244 e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~Vd~L~~~~---~~~sl~~Le~~-----l~e~~~l---i~Eq~siaq 312 (1154)
..|+.+..+.....+....-..++...|..|+..+..+.... ...+.+.+... .++...+ +++...++.
T Consensus 155 ~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE 234 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIE 234 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555556667778888888888775531 11122222221 1111122 333333444
Q ss_pred HHHHhHHHHHhhhhccccccccCCCCccccccccCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 313 SLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQK 392 (1154)
Q Consensus 313 sL~kD~e~V~kL~dd~~~~~lssS~~s~davs~Ls~ma~~Htk~lLPsL~~~~~eL~d~l~~~~~~KNeL~~~~~~~Lr~ 392 (1154)
.|++|+ +..-+ +| .. ..-+.+...|.....+|.++-.++..-|=-+.+-.=.-|..
T Consensus 235 ~LRkDV--~~RgV------------Rp------~~----~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~ 290 (426)
T smart00806 235 ALRKDV--AQRGV------------RP------SK----KQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDK 290 (426)
T ss_pred HHHHHH--HHcCC------------CC------CH----HHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 444443 00000 00 00 11122334566777777777777877777777777777777
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHH
Q 001114 393 ITYVSYVIKDAKLQFPVFREAMVRQDDIFADLKLV 427 (1154)
Q Consensus 393 IS~IQs~I~evk~~L~~L~e~L~rq~d~F~~L~~V 427 (1154)
|..=|.-+.-..-.+.-|.+.|.+-.+.|..+.++
T Consensus 291 VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq~ 325 (426)
T smart00806 291 VCEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQC 325 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77655544333333444666666555666665554
No 170
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.16 E-value=3.8e+02 Score=31.44 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
..+.+++..+..-.++-.++...|+.+..|-..|..||..++..+++.+
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555544444443
No 171
>PRK04406 hypothetical protein; Provisional
Probab=31.85 E-value=1.8e+02 Score=27.08 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=41.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHH
Q 001114 831 LADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHE 882 (1154)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~ 882 (1154)
.+.-...|.+||.||.....=|..|...+-.-+..++..+.-|.+|=+.|.+
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344568888999988888888999999989999999888888887666653
No 172
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.76 E-value=3.7e+02 Score=30.11 Aligned_cols=61 Identities=23% Similarity=0.217 Sum_probs=42.5
Q ss_pred CCCCCCCchhHHHHHHHHHHH--------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001114 812 DSGLDPKVSSELVLKLQSALA--------------DKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 812 ~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~ 872 (1154)
.|+.+.-.-+..-.+|+++|- +-.....+++.||....+|-..|..||+.++..++|.|+-
T Consensus 97 GHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~er 171 (290)
T COG4026 97 GHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQER 171 (290)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554555566666542 3445567777888888888888888888888888887776
No 173
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=31.66 E-value=1.4e+03 Score=30.46 Aligned_cols=106 Identities=24% Similarity=0.252 Sum_probs=66.4
Q ss_pred CCCCchhHHHHHHHHHHHhhhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 001114 815 LDPKVSSELVLKLQSALADKSDQLSETQTK-------LKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEA 887 (1154)
Q Consensus 815 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~ 887 (1154)
++..-+.-++..++..|..+.++..+++.. |.+..++-++|+.|++.++..|++..-.|--..--+.++-++-
T Consensus 294 ~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~ 373 (775)
T PF10174_consen 294 LELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEK 373 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445678888999988887777765544 4555666888999999888888887777665555555443332
Q ss_pred HH----------hhhhHhHhHH----HHHH----HHHhhhhhhhhhhhhcc
Q 001114 888 QT----------HLCAADRRAS----EYSA----LRASAVKLRGLFERLRS 920 (1154)
Q Consensus 888 ~~----------~~~~~d~~~~----~~~~----l~~~~~r~~gl~~~~~~ 920 (1154)
-+ ++-..++.++ .|.+ |+--..++.++++|+++
T Consensus 374 ~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~ 424 (775)
T PF10174_consen 374 SRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS 424 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 1222222222 2222 33444778888888885
No 174
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.62 E-value=2.5e+02 Score=28.57 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHH
Q 001114 835 SDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSA 903 (1154)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~ 903 (1154)
.+.|..++..+..+..+|+.|+.+++..+..|+++.. ...+-+..-+..+..+.+|+.+++.
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~-------sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEA-------SWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777788888777777776443 3455555666677777777777765
No 175
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=31.16 E-value=4.8e+02 Score=28.56 Aligned_cols=79 Identities=24% Similarity=0.285 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhHHhhhHHHHHHHHHhhhhHhHhHH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ-MNCAHLENCLHEAREEAQTHLCAADRRAS 899 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~-~~~~~~en~~~~~~~~~~~~~~~~d~~~~ 899 (1154)
..+|-.|+..|-..-++..+++.+++..-+|+-.++.+|..++.+.+.-. ..+.-|..-|+ .+++.+..+|+++.
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~----~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLS----QLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999998887655221 12333555555 66777788888888
Q ss_pred HHHH
Q 001114 900 EYSA 903 (1154)
Q Consensus 900 ~~~~ 903 (1154)
++..
T Consensus 143 ~Lek 146 (194)
T PF15619_consen 143 ELEK 146 (194)
T ss_pred HHHH
Confidence 8766
No 176
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=30.67 E-value=2.6e+02 Score=29.75 Aligned_cols=89 Identities=21% Similarity=0.247 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhhhHHhhhHHHHHHHHH---
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELE-------MRQKLLDESQMNCAHLENCLHEAREEAQT--- 889 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~-------~~~~~l~e~~~~~~~~en~~~~~~~~~~~--- 889 (1154)
.+.++..|+.+....-..|.-+..|+..+..+...++.+|. ..+..|..+...+..+.+...+-+...-.
T Consensus 61 Rn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~ 140 (177)
T PF13870_consen 61 RNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGV 140 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 57888999999999999999999999999999888888777 55566666667777777777743322211
Q ss_pred -hh-hhHhHhHHHHHHHHHhh
Q 001114 890 -HL-CAADRRASEYSALRASA 908 (1154)
Q Consensus 890 -~~-~~~d~~~~~~~~l~~~~ 908 (1154)
.+ -..|+...++..||..-
T Consensus 141 P~ll~Dy~~~~~~~~~l~~~i 161 (177)
T PF13870_consen 141 PALLRDYDKTKEEVEELRKEI 161 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 11 13556666666666554
No 177
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=30.42 E-value=7.8e+02 Score=27.41 Aligned_cols=60 Identities=15% Similarity=0.046 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhh-HH--HHHHHH-hchHHHHHHHHHHHH
Q 001114 383 NVFVHNYMQKITYVSYVIKDAKLQFPVFREAMVRQDD-IF--ADLKLV-RGIGPAYRACLAEVV 442 (1154)
Q Consensus 383 ~~~~~~~Lr~IS~IQs~I~evk~~L~~L~e~L~rq~d-~F--~~L~~V-~~LP~aYga~LiEvV 442 (1154)
+..++.+.+-++..-..|.--+.-+..++|+-....+ .+ .....| .+.-.++.+.++|+-
T Consensus 105 ~d~L~~Y~GlL~~fPDii~v~K~A~~KvkE~~k~~~e~Km~~~~~~~v~~R~~~isya~~AEm~ 168 (207)
T cd07669 105 LDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMDQDEADGIRKRCRVVGFALQAEMN 168 (207)
T ss_pred HHHHHHHhCcccCCccHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444444444444445555555554211111 11 122234 466777778888863
No 178
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.38 E-value=1.1e+02 Score=37.67 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=26.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001114 828 QSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~ 872 (1154)
+++|.+.....+|+|.||.++..|...+.+.+..++.+|++.+..
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE 112 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQD 112 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 455555566666666666666666665555555556655554444
No 179
>PRK02793 phi X174 lysis protein; Provisional
Probab=29.98 E-value=1.6e+02 Score=27.22 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=41.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHH
Q 001114 834 KSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEA 883 (1154)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~ 883 (1154)
-.+.|.+||.||.....=|..|...+-.-+..++..+.-|.+|-+.|.++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34688899999988888899999999999999999998888887777644
No 180
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=29.55 E-value=6.4e+02 Score=25.94 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001114 986 ELAHEQLKKELEEKKELVKTLYT 1008 (1154)
Q Consensus 986 e~~~~~~~ke~~~k~~~~~~l~~ 1008 (1154)
+...+.+...++.+.+.++.-+.
T Consensus 165 ~~~~~~l~~~l~~~~~~l~~~~~ 187 (202)
T PF01442_consen 165 EEKAEELKETLDQRIEELESSID 187 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 181
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=29.54 E-value=4.7e+02 Score=28.41 Aligned_cols=65 Identities=26% Similarity=0.374 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHHHHHhhhhhhhhhh
Q 001114 846 KAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSALRASAVKLRGLFE 916 (1154)
Q Consensus 846 ~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~r~~gl~~ 916 (1154)
..+..+|..|+.|.+.+...+.+.+..|..+|...+|.++... -+...|++.|+..+..++--.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~------k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE------KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455557777777777777777777777777766665544332 3457788888888877765444
No 182
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=29.47 E-value=1e+03 Score=28.26 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=47.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCh----hhHHHHHHHHHHHHHHHHHHHH
Q 001114 242 KEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPI----KNLEMMIKEHQRFINEQKSIMQ 312 (1154)
Q Consensus 242 d~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~Vd~L~~~~~~~sl----~~Le~~l~e~~~li~Eq~siaq 312 (1154)
+..+++...+.+..+...+..++...+..+.-+......+....|.... ......+...+.+++++..+-+
T Consensus 135 ~~~~~~~~L~~A~~sD~~v~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~ 209 (353)
T cd09236 135 QAAEYEGYLKQAGASDELVRRKLDEWEDLIQILTGDERDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLES 209 (353)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999999998887777766555444321 1233334444444555544433
No 183
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=29.43 E-value=4.4e+02 Score=26.82 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHHHHHhh
Q 001114 852 VVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSALRASA 908 (1154)
Q Consensus 852 ~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~ 908 (1154)
+..+...++..+..++..++.+.-|..-..|--|.++.......|.-.-.+.||..+
T Consensus 67 ~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~ 123 (132)
T PF10392_consen 67 IEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVS 123 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888889999999999999888999999999999999999999988888899876
No 184
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.40 E-value=1.7e+02 Score=34.30 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHH
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAR 884 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~ 884 (1154)
+..+...++.+|..-..++.....++..+.+++..++..++....+..|++..=+++|+.+++-|
T Consensus 202 d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 185
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.30 E-value=1.4e+03 Score=29.90 Aligned_cols=72 Identities=19% Similarity=0.137 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhccCchhhhccCCCCCCCCccccccCCCC--CCCcc
Q 001114 444 RKASMKLYMGMAGQLAERLATKRE-------VEVRRREEFLKANSVYIPRDILGSMGLYDTPNQCDVNIAPSD--TNLLD 514 (1154)
Q Consensus 444 RRew~~k~~~~as~LAEeLa~lre-------eE~kRRekf~K~~G~~LP~dL~~~~GL~d~PP~~evnl~~~D--~~LP~ 514 (1154)
|.++.+.|- .+.|.|-+..|++ +..-||=.|.|..-.-+- +.|. .--|+.|.| ++. +..-.
T Consensus 230 reelIkwf~--~qqL~ey~~IF~en~E~a~LDkidrRY~wfKr~L~~fe-~k~~----~iFP~dW~v---~~RLt~eFc~ 299 (793)
T KOG2180|consen 230 REELIKWFC--SQQLEEYEQIFRENEEAASLDKLDRRYAWFKRLLRDFE-EKWK----PIFPADWHV---AYRLTIEFCH 299 (793)
T ss_pred HHHHHHHHH--HHHHHHHHHHHhccHhhhhhhhHHHHHHHHHHHHHHHH-Hhcc----ccCCcccch---hHHHHHHHHH
Confidence 455555553 3456666667777 345688888876543331 2221 112556665 333 35667
Q ss_pred CCHHHHHhhhh
Q 001114 515 IDISDLEVYAP 525 (1154)
Q Consensus 515 I~r~Dle~yi~ 525 (1154)
++|+||+....
T Consensus 300 ~Tr~~L~~Il~ 310 (793)
T KOG2180|consen 300 QTRKQLESILK 310 (793)
T ss_pred HHHHHHHHHHH
Confidence 78888887754
No 186
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=29.27 E-value=3.4e+02 Score=29.33 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001114 825 LKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~ 872 (1154)
..|+.++.+....|.+.+.-+..+.+|+..|+-+++....+++..+..
T Consensus 126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444445555555555555555555555555443
No 187
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=29.15 E-value=3.9e+02 Score=25.11 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 825 LKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLD 867 (1154)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~ 867 (1154)
..+.+++++-.+.+..++.++..+..|+..+-.+.+.+..-.+
T Consensus 22 ~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666665555555444443333
No 188
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.12 E-value=2.5e+02 Score=24.95 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=17.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001114 830 ALADKSDQLSETQTKLKAVMEEVVMLGRELE 860 (1154)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~ 860 (1154)
++++-+.++.+|.+|+..+..+|+.|+.++.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555543
No 189
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=29.10 E-value=2.2e+02 Score=35.69 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLH 881 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~ 881 (1154)
...+.++...++.-+..|.|+|.|-..+..||+.++.-+|.++.++...|-+--.|+|-.+
T Consensus 78 ~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 78 GRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 4568899999999999999999999999999999998888888888888888666777666
No 190
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=29.05 E-value=1e+02 Score=33.42 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001114 825 LKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELE 860 (1154)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~ 860 (1154)
..|+.++..+...|.+++..+..+..+|..|..+|.
T Consensus 105 ~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ 140 (194)
T PF08614_consen 105 QELEKELSEKERRLAELEAELAQLEEKIKDLEEELK 140 (194)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333333333333333
No 191
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=29.03 E-value=1.3e+02 Score=28.84 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=31.4
Q ss_pred EEecCCceeEecCCCCCCHHHHHHHHHHHhCCCC
Q 001114 18 HISENGHSFELDCNENSPVEAVMRFIESAAGINF 51 (1154)
Q Consensus 18 ~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~ 51 (1154)
|-+..|+...|.+.+..++.+|++.|++..|+..
T Consensus 5 ~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~ 38 (86)
T cd06409 5 FKDPKGRVHRFRLRPSESLEELRTLISQRLGDDD 38 (86)
T ss_pred eeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCcc
Confidence 4577999999999999999999999999999987
No 192
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.97 E-value=1.3e+02 Score=26.65 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=23.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001114 834 KSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDES 869 (1154)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~ 869 (1154)
|-.++.+|+.++..+..+...|+.++..+...+..+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777776666655543
No 193
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=28.71 E-value=9.7e+02 Score=28.79 Aligned_cols=140 Identities=15% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001114 259 QFENKVSQFKQIFDD----------------VKRRVEELLNTRASLPIKNLEMMIKEHQRFINEQKSIMQSLSKDVSTVK 322 (1154)
Q Consensus 259 ~f~~Kv~~L~~~i~~----------------Ik~~Vd~L~~~~~~~sl~~Le~~l~e~~~li~Eq~siaqsL~kD~e~V~ 322 (1154)
.|..|+..|++.++. |...++.|.....--+...|+..-.....+..++. .|.+.-..+.
T Consensus 213 ~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~----~l~~~~~~~~ 288 (388)
T PF04912_consen 213 DLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELE----ELAEKRKEAK 288 (388)
T ss_pred HHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH----HHHhcccccc
Q ss_pred hhhhccccccccCCCCccccccccCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 323 KLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKD 402 (1154)
Q Consensus 323 kL~dd~~~~~lssS~~s~davs~Ls~ma~~Htk~lLPsL~~~~~eL~d~l~~~~~~KNeL~~~~~~~Lr~IS~IQs~I~e 402 (1154)
...+. -..+..+|.. +|.+..++..|=.++.++...+ .+=.++..+.+.+..+.....+
T Consensus 289 ~~~~~---------------e~KI~eLy~~-----l~~~~~~~~~lP~lv~RL~tL~-~lH~~a~~~~~~l~~le~~q~~ 347 (388)
T PF04912_consen 289 EDAEQ---------------ESKIDELYEI-----LPRWDPYAPSLPSLVERLKTLK-SLHEEAAEFSQTLSELESQQSD 347 (388)
T ss_pred ccccc---------------hhHHHHHHHH-----HHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhHHHHHHHhhhhHHHH
Q 001114 403 AKLQFPVFREAMVRQDDIFAD 423 (1154)
Q Consensus 403 vk~~L~~L~e~L~rq~d~F~~ 423 (1154)
+...+..+++.|......|..
T Consensus 348 l~~~l~~~~~~L~~ve~~~~~ 368 (388)
T PF04912_consen 348 LQSQLKKWEELLNKVEEKFKE 368 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 194
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.69 E-value=1.2e+02 Score=31.86 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhhh
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEE---------VVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~el~~~~~~l~e~~~~ 872 (1154)
+..+.+|+..+.+-...++.+++.|+.+... |+.|+.|++.+..+|+..+.+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4568888888888888888888888776554 888888888888888877665
No 195
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.49 E-value=3.3e+02 Score=27.96 Aligned_cols=39 Identities=18% Similarity=0.395 Sum_probs=18.8
Q ss_pred ccccccccCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 234 CKCLLDFVKE--EHLRKSAETCSSSHRQFENKVSQFKQIFD 272 (1154)
Q Consensus 234 ~~TL~DfVd~--e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~ 272 (1154)
++.|.|.+.. ..|.++.+....+-++|..|++.+...++
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klD 78 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLD 78 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444444442 34555555555555555555555444444
No 196
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=28.48 E-value=4.2e+02 Score=24.58 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=35.4
Q ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 001114 819 VSSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLH 881 (1154)
Q Consensus 819 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~ 881 (1154)
.++..|..|...-..-+++-....+-|+.+-..+..+..++..+...++++...-..|+.+|.
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677777765555555555555555555555555555555555555555555334444443
No 197
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=28.40 E-value=4.3e+02 Score=29.54 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHH
Q 001114 824 VLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSA 903 (1154)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~ 903 (1154)
+..+-...+.-.++=..+-..|..+.+++..|..|++..|+.+.+--.. +++-|.+|-..++.-+...|.+..||..
T Consensus 67 ~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k---~~k~~~~a~~~leKAK~~Y~~~c~e~Ek 143 (234)
T cd07652 67 YHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKR---AEKKVQDAEAAAEKAKARYDSLADDLER 143 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q 001114 904 LRAS 907 (1154)
Q Consensus 904 l~~~ 907 (1154)
++..
T Consensus 144 ar~~ 147 (234)
T cd07652 144 VKTG 147 (234)
T ss_pred Hhcc
No 198
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=28.36 E-value=3.1e+02 Score=30.49 Aligned_cols=91 Identities=20% Similarity=0.122 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHH-HHHHhhhhHhHhHH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEARE-EAQTHLCAADRRAS 899 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~-~~~~~~~~~d~~~~ 899 (1154)
-+.+....++|+.+-=.++-..++++....+-..++.||+..+.+.+|+.++ .+++|..-.+ ++.--.|=.+-...
T Consensus 113 ~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfees~E~---a~~~M~~i~~~e~e~~~~L~~lv~A 189 (215)
T cd07593 113 MKEYHSARKKLESRRLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEESSED---VEARMVAIKESEADQYRDLTDLLDA 189 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3577778888888888888888888887766678999999999999999999 8888885555 34444444444444
Q ss_pred HHHHHHHhhhhhhhh
Q 001114 900 EYSALRASAVKLRGL 914 (1154)
Q Consensus 900 ~~~~l~~~~~r~~gl 914 (1154)
+++--+.+.--+.+|
T Consensus 190 Ql~Yh~q~~e~L~~l 204 (215)
T cd07593 190 ELDYHQQSLDVLREV 204 (215)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444333333
No 199
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=28.28 E-value=6.5e+02 Score=27.03 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh------hHHHHHHHHHhhhhHhHhHHHHHHHHHhh-hh
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENC------LHEAREEAQTHLCAADRRASEYSALRASA-VK 910 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~------~~~~~~~~~~~~~~~d~~~~~~~~l~~~~-~r 910 (1154)
-.+++++|..+...|-.+..++..+..+-|+....+-+|++. -...++..+.....++...+.++..|.+- .+
T Consensus 4 ~~ei~~~l~~l~~~vq~~e~~~k~Le~~QE~f~~~~q~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~R~~lv~~ 83 (182)
T PF01017_consen 4 QQEIEQKLQDLRNRVQETENDIKSLEDLQEEFDFQYQTLQQLQETEQNSNALKEQLKQEQQQLQQMLNELDQKRKELVSK 83 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTT--STTTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666665444443 11122324445556666666666666443 34
Q ss_pred hhhhhhhhc
Q 001114 911 LRGLFERLR 919 (1154)
Q Consensus 911 ~~gl~~~~~ 919 (1154)
+++++..+.
T Consensus 84 l~~~~~~~~ 92 (182)
T PF01017_consen 84 LKETLNCLE 92 (182)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 200
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=28.23 E-value=96 Score=30.93 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=37.5
Q ss_pred CCc-eeEecCCCCCCHHHHHHHHHHHhC------CCCCCEE-EEecCCccccccccccccCCCCC
Q 001114 22 NGH-SFELDCNENSPVEAVMRFIESAAG------INFNDQL-VLCLDMKLEPQKLLSAYRLPSDD 78 (1154)
Q Consensus 22 tG~-~l~~d~~~f~SVe~LK~~Ia~~t~------IP~~~QI-LLtsgGkl~k~~~L~~Y~l~~de 78 (1154)
+|. .-.+.....++|.+||+.|-..|- ......| |+..|--|....+|..++.+..+
T Consensus 11 ~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~ 75 (111)
T PF13881_consen 11 DGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGE 75 (111)
T ss_dssp TS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTS
T ss_pred CCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCC
Confidence 888 777777789999999999999992 3334445 66644446677888888776433
No 201
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=28.20 E-value=7.6e+02 Score=26.41 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=41.8
Q ss_pred hcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccc
Q 001114 973 RHREELLDKNRKVELAHEQLKKELEEKKELVKTLYTKHQLEKQANKEKISFSRLE 1027 (1154)
Q Consensus 973 ~~~~~~~~r~~~~e~~~~~~~ke~~~k~~~~~~l~~k~~~~~~~~~~~i~~~~f~ 1027 (1154)
++..+.+++...+++-+..+-.+.+.-...|++.+++++--. +..+|+.+.|+
T Consensus 152 ~~l~~~lekL~~fd~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~g~~~~~~y~ 204 (204)
T PF04740_consen 152 KKLQETLEKLRAFDQQSSSIFSEIEELLQALQSGLSQLQSMW--NNGSISIGSYQ 204 (204)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCcccCCC
Confidence 344488888888888888889999999999999999884444 67777777664
No 202
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.19 E-value=3.7e+02 Score=27.34 Aligned_cols=57 Identities=25% Similarity=0.141 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001114 818 KVSSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCA 874 (1154)
Q Consensus 818 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~ 874 (1154)
..+...|+.|++.|..+.-++..+...+.++..+=..|+.||=.+-...|+.+..+.
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~ 68 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKK 68 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999888877777777666666666554433
No 203
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.14 E-value=1.3e+02 Score=29.63 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHHHHHhhhhhhhhhhhhcccccc
Q 001114 845 LKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSALRASAVKLRGLFERLRSCVFA 924 (1154)
Q Consensus 845 ~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~r~~gl~~~~~~~~~~ 924 (1154)
+..+......|+.+++.++..+...++-+.-|+++.. +++.|....--...+.-. ...++.
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~------------------~l~~l~~~~~~~~~l~~~-g~~~~~ 61 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKE------------------TLETLKKAEEEKELLVPL-GAGLFV 61 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhhccCCCCeEEEec-CCceEE
Q ss_pred CCcccchhhhHHHHH-HhhcccCCCCCCcChHHHHHHHHHhhhhhhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001114 925 SEGAGGFADSLRTLA-QSLANSISDNEDDGTAEFRKCIRVLADRVAFLSRHREELLDKNRKVELAHEQLKKELEEK 999 (1154)
Q Consensus 925 p~~~~~~~~~l~~~~-~~l~~~~~~~~~~~~~~f~~~i~~l~d~v~fl~~~~~~~~~r~~~~e~~~~~~~ke~~~k 999 (1154)
|+.+.+--.=+-.++ .++.. -.+...++.|.+|+.+|......+-+....++.-...+...+..+
T Consensus 62 ~~~i~~~~~v~v~iG~~~~ve----------~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 62 KAEVKDDDKVLVDLGTGVYVE----------KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEEECCCCEEEEEecCCEEEE----------ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 204
>PRK11546 zraP zinc resistance protein; Provisional
Probab=27.92 E-value=1.8e+02 Score=30.49 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001114 852 VVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 852 ~~~l~~el~~~~~~l~e 868 (1154)
|..|.+|+..++.+|+|
T Consensus 91 I~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 91 INAVAKEMENLRQSLDE 107 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555553
No 205
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.71 E-value=3.5e+02 Score=29.91 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhhhh
Q 001114 822 ELVLKLQSALADKSDQ 837 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~ 837 (1154)
.++.+|+.+|++-+++
T Consensus 100 ~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 100 NQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 4455555555554433
No 206
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=27.68 E-value=2.7e+02 Score=29.51 Aligned_cols=54 Identities=2% Similarity=-0.024 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHH
Q 001114 839 SETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYS 902 (1154)
Q Consensus 839 ~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~ 902 (1154)
++-+.++..-.++...++.|++. ...+ ||..|.+||.+|+.-...|...+...-
T Consensus 34 eeR~~~I~~~Ld~Ae~~r~eA~~-------l~~e---~e~~L~~Ar~EA~~Ii~~A~~~a~~~~ 87 (154)
T PRK06568 34 DAKILEVQEKVLKAEKLKEDAAL-------LFEQ---TNAQIKKLETLRSQMIEESNEVTKKII 87 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555443 3334 788888888888887777777666543
No 207
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=27.54 E-value=9.8e+02 Score=27.44 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 379 KNEMNVFVHNYMQKITYVSYVIKDAK 404 (1154)
Q Consensus 379 KNeL~~~~~~~Lr~IS~IQs~I~evk 404 (1154)
|-+.+.-+...+|.+..+.++|....
T Consensus 246 RisalnivgDllRkvgalesklascr 271 (333)
T KOG1853|consen 246 RISALNIVGDLLRKVGALESKLASCR 271 (333)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 44445556667777777776666554
No 208
>PRK04325 hypothetical protein; Provisional
Probab=27.38 E-value=1.8e+02 Score=27.05 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=41.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHH
Q 001114 835 SDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEA 883 (1154)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~ 883 (1154)
...|.+||.|+.....=|..|...+-.-++.+++.+.-|.+|-+.|.++
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468999999988888899999999999999999998888887777744
No 209
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=27.34 E-value=2.9e+02 Score=34.51 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHH
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRAS 899 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~ 899 (1154)
..+.+.+|...+..-++-|..+|+-|.....++..+..|+..+|.+-.+.+.. |+|+-.
T Consensus 12 e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~---L~Nrk~------------------ 70 (508)
T PF04129_consen 12 ESENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVK---LKNRKA------------------ 70 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHH------------------
Q ss_pred HHHHHHHhhhhhhhhhhhhccccccCC--cccchhhhHHHHHHhhcccCCCCCCcChHHHHHHHHHhhhhhhhhhhcHHH
Q 001114 900 EYSALRASAVKLRGLFERLRSCVFASE--GAGGFADSLRTLAQSLANSISDNEDDGTAEFRKCIRVLADRVAFLSRHREE 977 (1154)
Q Consensus 900 ~~~~l~~~~~r~~gl~~~~~~~~~~p~--~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~f~~~i~~l~d~v~fl~~~~~~ 977 (1154)
+ +...|++.|- +.+.|-.+.-.++-++. -|...+.++.-+..+...+...
T Consensus 71 --------------------------~~~~L~~~i~~i~-ipP~lI~~I~~~~v~e~-~~~~~~~~~~k~~~~~~~~~~~ 122 (508)
T PF04129_consen 71 --------------------------VEEKLSPFIDDIV-IPPDLIRSICEGPVNEQ-YIEELLELLKKKIFFSKDQSFK 122 (508)
T ss_pred --------------------------HHHHHHHHHHHHc-CCHHHHHhHhcCCCCHH-HHHHHHHHHHHHHHHHhhcccc
Q ss_pred HHHHhHHHHHHHHHHH
Q 001114 978 LLDKNRKVELAHEQLK 993 (1154)
Q Consensus 978 ~~~r~~~~e~~~~~~~ 993 (1154)
=.+-+++++...++|+
T Consensus 123 ~~~a~~d~~~~Le~L~ 138 (508)
T PF04129_consen 123 DSKAIKDVKPELEKLK 138 (508)
T ss_pred cccchHHHHHHHHHHH
No 210
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.13 E-value=2e+02 Score=25.91 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=16.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 832 ADKSDQLSETQTKLKAVMEEVVMLGRELEMR 862 (1154)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~ 862 (1154)
.+...++.+++.++..+.+|...|+.|++.+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555544
No 211
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.95 E-value=1.9e+02 Score=25.58 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGREL 859 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el 859 (1154)
..+.+|+..+..-......+...+..+.+++..|+.|+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556666666666666665555555555555555543
No 212
>PF15584 Imm44: Immunity protein 44
Probab=26.65 E-value=24 Score=33.99 Aligned_cols=11 Identities=45% Similarity=1.081 Sum_probs=9.4
Q ss_pred ccCCCcccccc
Q 001114 1046 NRNCSNYYLSA 1056 (1154)
Q Consensus 1046 n~~~~~y~l~~ 1056 (1154)
|.|||||||-.
T Consensus 42 ~~gc~NYf~~g 52 (94)
T PF15584_consen 42 NVGCPNYFLGG 52 (94)
T ss_pred ccCcchhhcCC
Confidence 67999999964
No 213
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.24 E-value=1.6e+03 Score=29.36 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001114 462 LATKREVEVRRREEFLKANSVY 483 (1154)
Q Consensus 462 La~lreeE~kRRekf~K~~G~~ 483 (1154)
......+|..-|+.+++.+..+
T Consensus 362 ~i~k~keea~srk~il~~ve~W 383 (660)
T KOG4302|consen 362 LIKKYKEEALSRKEILERVEKW 383 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666443
No 214
>smart00338 BRLZ basic region leucin zipper.
Probab=26.14 E-value=1.6e+02 Score=26.02 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=20.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 834 KSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLD 867 (1154)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~ 867 (1154)
|...+.+|+.++..++.+...|+.+++.++..+.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666655544443
No 215
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.12 E-value=1.1e+03 Score=27.61 Aligned_cols=59 Identities=17% Similarity=0.356 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 001114 266 QFKQIFDDVKRRVEELLNTRASLPIKNLEMMIKEHQRFINEQKSIMQSLSKDVSTVKKLVD 326 (1154)
Q Consensus 266 ~L~~~i~~Ik~~Vd~L~~~~~~~sl~~Le~~l~e~~~li~Eq~siaqsL~kD~e~V~kL~d 326 (1154)
+.++++.+|+.+-+++...- .++.+|.++.-++.-|++.|.+.+..|..++.+....+.
T Consensus 193 ~~~~~l~Eiq~Rh~~ik~LE--ksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~ 251 (297)
T KOG0810|consen 193 QAKQTLAEIQERHDEIKKLE--KSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVE 251 (297)
T ss_pred hhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34456666666666554210 123456666666777788888888888877766655543
No 216
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.10 E-value=2.5e+02 Score=33.25 Aligned_cols=71 Identities=28% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 001114 817 PKVSSELVLKLQSALADKSDQLSETQTKLKAVMEE----VVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEA 887 (1154)
Q Consensus 817 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~ 887 (1154)
+.+.....+.+....+++.+++..+.+.|++-.+| .+.|+.|.+++.-.+-..||||--|---.+||-|-|
T Consensus 209 asvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~ 283 (365)
T KOG2391|consen 209 ASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKA 283 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
No 217
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=25.98 E-value=9.1e+02 Score=26.52 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001114 360 RMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPV 409 (1154)
Q Consensus 360 sL~~~~~eL~d~l~~~~~~KNeL~~~~~~~Lr~IS~IQs~I~evk~~L~~ 409 (1154)
...+...-|++++..|...|+.+.... ..+...-.++..+...+.++..
T Consensus 85 e~~~l~~~L~ey~r~~~Svk~~~~~R~-~~~~~~~~~~~~L~k~~~~~~K 133 (216)
T cd07627 85 DVLTLGVTLDEYIRSIGSVRAAFAQRQ-KLWQYWQSAESELSKKKAQLEK 133 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777776665544 3334444444444444444433
No 218
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=25.75 E-value=5.1e+02 Score=28.72 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001114 641 QAMLKAKQMQCVSYEKRIQELEQRLSDQYL 670 (1154)
Q Consensus 641 q~~~~~~~~~~~~~e~RIr~LE~lL~~Q~~ 670 (1154)
.+++-...-+|.-.|.||+.|+.+|..--.
T Consensus 128 ~eel~~a~~K~qemE~RIK~LhaqI~EKDA 157 (205)
T PF12240_consen 128 EEELHMANRKCQEMENRIKALHAQIAEKDA 157 (205)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 678888889999999999999999887554
No 219
>PRK09039 hypothetical protein; Validated
Probab=25.72 E-value=1.2e+03 Score=27.76 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=16.0
Q ss_pred hhhhccccccc--ccccccceEEeeccCC
Q 001114 1013 EKQANKEKISF--SRLEVHEIAAFVLNSA 1039 (1154)
Q Consensus 1013 ~~~~~~~~i~~--~~f~~~~~~~f~~~~~ 1039 (1154)
+...+.+.|.+ .+|.+..-++|-++++
T Consensus 205 ~~~~~~~~iri~g~~~~~~~~vlF~~gsa 233 (343)
T PRK09039 205 EILGDREGIRIVGDRFVFQSEVLFPTGSA 233 (343)
T ss_pred HHhCCCCCcEEECCEEEecCCceeCCCCc
Confidence 44455555554 5676666677766553
No 220
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=25.64 E-value=1.3e+02 Score=35.08 Aligned_cols=51 Identities=10% Similarity=0.257 Sum_probs=40.7
Q ss_pred ceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccC
Q 001114 24 HSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRL 74 (1154)
Q Consensus 24 ~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l 74 (1154)
+.+.+.++.-+++.+||+.++...|||++++=++..|-+|-+..++...-+
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL 64 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDL 64 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccc
Confidence 345556667789999999999999999999988888888877777754433
No 221
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.49 E-value=1.3e+02 Score=32.67 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=12.7
Q ss_pred cccchhhhHHHHHHhhccc
Q 001114 927 GAGGFADSLRTLAQSLANS 945 (1154)
Q Consensus 927 ~~~~~~~~l~~~~~~l~~~ 945 (1154)
++-.|.|.|-.|-..+-+-
T Consensus 150 ~anrwTDNI~~l~~~~~~k 168 (188)
T PF03962_consen 150 AANRWTDNIFSLKSYLKKK 168 (188)
T ss_pred HHHHHHhhHHHHHHHHHHh
Confidence 3466777777777777663
No 222
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=25.42 E-value=5.3e+02 Score=30.46 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=28.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 827 LQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLD 867 (1154)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~ 867 (1154)
++..+.+...++.+++..+.....+....+.+++..+.|.+
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~ 137 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAK 137 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555667777777777777777777777776665554
No 223
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=25.37 E-value=2.2e+02 Score=30.54 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHH
Q 001114 824 VLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRAS 899 (1154)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~ 899 (1154)
+-.+.+.|+++.+.+...-.+.+...+++. +.+.. ||..|++||.+|+.-+..|-..+.
T Consensus 53 ~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~--------------~~~~e---ye~~L~~Ar~EA~~ii~~A~~ea~ 111 (181)
T PRK13454 53 LPRIGAVLAERQGTITNDLAAAEELKQKAV--------------EAEKA---YNKALADARAEAQRIVAETRAEIQ 111 (181)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666555544333333333322 22233 677777777777766666644443
No 224
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.05 E-value=1e+03 Score=26.74 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 001114 839 SETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLH 881 (1154)
Q Consensus 839 ~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~ 881 (1154)
.++..++...-+|-..|..|++.+...++-.+--+.||+..+.
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555556666665
No 225
>PRK10132 hypothetical protein; Provisional
Probab=24.82 E-value=2.9e+02 Score=27.52 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 001114 838 LSETQTKLKAVMEEVVMLGRELE 860 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~ 860 (1154)
..+++.++..++.||..|-.+||
T Consensus 7 ~~~~~~q~e~L~~Dl~~L~~~le 29 (108)
T PRK10132 7 RNDVDDGVQDIQNDVNQLADSLE 29 (108)
T ss_pred cchhhhHHHHHHHHHHHHHHHHH
Confidence 34556666667777776666665
No 226
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=24.63 E-value=1e+03 Score=26.59 Aligned_cols=151 Identities=24% Similarity=0.319 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASE 900 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~ 900 (1154)
...+.+||.++..-+..|++ -+.-.+|..|+..+.. +|+-|.+||++++.-+.+++..+..
T Consensus 8 ~~~~d~lq~~i~~as~~lNd-----~TGYs~Ie~LK~~i~~--------------~E~~l~~~r~~~~~aK~~Y~~ai~~ 68 (207)
T PF05546_consen 8 SFYMDSLQETIFTASQALND-----VTGYSEIEKLKKSIEE--------------LEDELEAARQEVREAKAAYDDAIQQ 68 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----ccChHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhhhhhhccccc-cCCcccchhhhHHHHHHhhcccCCCC----------------CCcChHHHHHHHHH
Q 001114 901 YSALRASAVKLRGLFERLRSCVF-ASEGAGGFADSLRTLAQSLANSISDN----------------EDDGTAEFRKCIRV 963 (1154)
Q Consensus 901 ~~~l~~~~~r~~gl~~~~~~~~~-~p~~~~~~~~~l~~~~~~l~~~~~~~----------------~~~~~~~f~~~i~~ 963 (1154)
-+ ++-.-|-+|..|+. + +|.-+..|..=.| +++ |......|.+..+.
T Consensus 69 Rs---~sQrEvn~LLqRK~---sWs~~DleRFT~Lyr----------~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~~~ 132 (207)
T PF05546_consen 69 RS---SSQREVNELLQRKH---SWSPADLERFTELYR----------NDHENEQAEEEAKEALEEAEEKVEEAFDDLMRA 132 (207)
T ss_pred HH---HHHHHHHHHHhccc---CCChHHHHHHHHHHH----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh----------hhhh----------------------hhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 964 LA----------DRVA----------------------FLSRHREELLDKNRKVELAHEQLKKELEEKKELVKTLYTKH 1010 (1154)
Q Consensus 964 l~----------d~v~----------------------fl~~~~~~~~~r~~~~e~~~~~~~ke~~~k~~~~~~l~~k~ 1010 (1154)
+= |||- |+- |=-||-+-|.+|-.++...+++-.+....-+..+
T Consensus 133 Il~RYHEEQiWSDKIRr~STwgT~~lmgvNvllFl~~~~~~----EPwkRrRLv~~fe~~v~~~l~~~~~~~~~~~~~~ 207 (207)
T PF05546_consen 133 ILTRYHEEQIWSDKIRRASTWGTWGLMGVNVLLFLVAQLLV----EPWKRRRLVKSFEEKVKEALEEVRQELELKLDQM 207 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
No 227
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=24.53 E-value=3.9e+02 Score=23.81 Aligned_cols=28 Identities=7% Similarity=0.235 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 837 QLSETQTKLKAVMEEVVMLGRELEMRQK 864 (1154)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~el~~~~~ 864 (1154)
.+++|.+.+..+...|..|..++..++.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 228
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=24.33 E-value=1.2e+03 Score=27.25 Aligned_cols=130 Identities=9% Similarity=0.098 Sum_probs=85.7
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhchHHH
Q 001114 354 DKSHLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVFREAMVRQDDIFADLKLVRGIGPA 433 (1154)
Q Consensus 354 tk~lLPsL~~~~~eL~d~l~~~~~~KNeL~~~~~~~Lr~IS~IQs~I~evk~~L~~L~e~L~rq~d~F~~L~~V~~LP~a 433 (1154)
.+.+.|.+.++..++.++-+.+...... ..++.|..++..+..++..+.-.++++.+....... ..-.+.-.-
T Consensus 149 ~d~~~~~le~i~~~~~~ie~~l~~~~~~------~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~-~~~~~~~~~ 221 (322)
T COG0598 149 VDNYFPVLEQIEDELEAIEDQLLASTTN------EELERLGELRRSLVYLRRALAPLRDVLLRLARRPLD-WLSEEDREY 221 (322)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcCccH------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcc-cCCHHHHHH
Confidence 4455666666666666655555443322 467777777777777776665555544332221110 011123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-Cchhhhc
Q 001114 434 YRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKANSVY-IPRDILG 490 (1154)
Q Consensus 434 Yga~LiEvVRRRew~~k~~~~as~LAEeLa~lreeE~kRRekf~K~~G~~-LP~dL~~ 490 (1154)
+.-+..++.|=-+..+.+....+.+.+....+...+.-.-=+.+.-++-. +|+.++.
T Consensus 222 l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIa 279 (322)
T COG0598 222 LRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLIT 279 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 56667777788888899999999999999999999999999999998876 6777655
No 229
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=24.23 E-value=1.1e+03 Score=28.11 Aligned_cols=14 Identities=21% Similarity=0.071 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhccC
Q 001114 471 RRREEFLKANSVYI 484 (1154)
Q Consensus 471 kRRekf~K~~G~~L 484 (1154)
.+|++=..++..++
T Consensus 285 ~~Re~Taski~k~~ 298 (465)
T KOG3973|consen 285 DRRERTASKIHKLS 298 (465)
T ss_pred chhhhhhhhhcccc
Confidence 46666666666655
No 230
>PF15456 Uds1: Up-regulated During Septation
Probab=24.18 E-value=3.7e+02 Score=27.46 Aligned_cols=62 Identities=27% Similarity=0.243 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-------HHHH------------------HHHHHHHHHHHhhhhhhhh
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEE-------VVML------------------GRELEMRQKLLDESQMNCA 874 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l------------------~~el~~~~~~l~e~~~~~~ 874 (1154)
+-++|.+|++.+..-+..+.-+..||. +.-. ++.+ ..||..+..+.||......
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~ 98 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELW 98 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 457888999888888888888777766 2222 2222 3456678888888888877
Q ss_pred hHHhhhHH
Q 001114 875 HLENCLHE 882 (1154)
Q Consensus 875 ~~en~~~~ 882 (1154)
.+||.+.+
T Consensus 99 ~le~R~~~ 106 (124)
T PF15456_consen 99 KLENRLAE 106 (124)
T ss_pred HHHHHHHH
Confidence 78887773
No 231
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=23.98 E-value=1.4e+02 Score=31.45 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEe--cCCccccccccccccCCCCCceEEEEeccccCC
Q 001114 32 ENSPVEAVMRFIESAAGINFNDQLVLC--LDMKLEPQKLLSAYRLPSDDKEVFIFNKLRLQS 91 (1154)
Q Consensus 32 ~f~SVe~LK~~Ia~~t~IP~~~QILLt--sgGkl~k~~~L~~Y~l~~denEIFVFDRrll~~ 91 (1154)
--.++++++..+...-.-..++-||+= |-|-.. |++..+||||||.+.+.
T Consensus 70 ~dpt~e~~~~~~~~~R~~a~~~RvLFHYnGhGvP~----------Pt~~GeIw~f~~~~tqy 121 (154)
T PF14538_consen 70 LDPTVEDLKRLCQSLRRNAKDERVLFHYNGHGVPR----------PTENGEIWVFNKNYTQY 121 (154)
T ss_pred cCCCHHHHHHHHHHHHhhCCCceEEEEECCCCCCC----------CCCCCeEEEEcCCCCcc
Confidence 457889999988888877777777763 333331 35678999999988744
No 232
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.97 E-value=1.2e+03 Score=27.42 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=17.6
Q ss_pred CCcChHHHHHHHHHhhhhhhhhhh
Q 001114 950 EDDGTAEFRKCIRVLADRVAFLSR 973 (1154)
Q Consensus 950 ~~~~~~~f~~~i~~l~d~v~fl~~ 973 (1154)
..|....+-.-|+.|.+-|.=|-+
T Consensus 220 ~~Dt~e~~~shI~~Lr~EV~RLR~ 243 (310)
T PF09755_consen 220 ENDTAERLSSHIRSLRQEVSRLRQ 243 (310)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHH
Confidence 345566899999999988884443
No 233
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=23.88 E-value=5.2e+02 Score=23.37 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHH
Q 001114 825 LKLQSALADKSDQLSETQTKLKAV--MEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYS 902 (1154)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~ 902 (1154)
......+++-..||.+++.+|... -..+..+...+...+....+...-..+++.+...|..+.......++..-..+.
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~ 83 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLE 83 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 344455555555666655555111 111233333333333333333333333444444444443333333333333333
Q ss_pred H
Q 001114 903 A 903 (1154)
Q Consensus 903 ~ 903 (1154)
.
T Consensus 84 ~ 84 (105)
T PF00435_consen 84 E 84 (105)
T ss_dssp H
T ss_pred H
Confidence 3
No 234
>PRK00295 hypothetical protein; Provisional
Probab=23.74 E-value=2.7e+02 Score=25.37 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHH
Q 001114 836 DQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHE 882 (1154)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~ 882 (1154)
+.|.+||.|+.....-|..|...+-.-+..+|..+.-|.+|-+.|.+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999998888889999999999999999988888887777664
No 235
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=23.57 E-value=1.3e+03 Score=28.11 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=33.5
Q ss_pred cCCCCcccccccccccccccC---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 222 SVKLHPSLQTATCKCLLDFVK---EEHLRKSAETCSSSHRQFENKVSQFKQ 269 (1154)
Q Consensus 222 ~IpIhpaL~~e~~~TL~DfVd---~e~Lrk~ae~C~~s~~~f~~Kv~~L~~ 269 (1154)
.|||..+.--+...||.|||- ..+.-.+++.+......+..++..+..
T Consensus 224 ~~Pvis~IGHE~D~tl~D~vAd~ra~TPtaaae~~~~~~~e~~q~Ld~l~~ 274 (438)
T PRK00286 224 RIPVISAVGHETDFTIADFVADLRAPTPTAAAELAVPDRAELLQRLQQLQQ 274 (438)
T ss_pred CCCEEEeccCCCCccHHHHhhhccCCChHHHHHHhCccHHHHHHHHHHHHH
Confidence 688888877688899999987 346666666666555555555555544
No 236
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.52 E-value=2.9e+02 Score=28.36 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 001114 852 VVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 852 ~~~l~~el~~~~~~l~e~~ 870 (1154)
|+.++++++.++..++..|
T Consensus 91 V~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 91 VTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 3333333333333333333
No 237
>smart00338 BRLZ basic region leucin zipper.
Probab=23.41 E-value=1.7e+02 Score=25.89 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGREL 859 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el 859 (1154)
..+.+|+..+..-..+..+|..++..+..|+..|+.++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666666666666655554
No 238
>PLN03188 kinesin-12 family protein; Provisional
Probab=23.30 E-value=1.9e+03 Score=30.66 Aligned_cols=156 Identities=21% Similarity=0.298 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHh---hhHHHHHHHHHhhhhHhHhHHHHHHHHHhh-------hhhh-hhhhhhcccc
Q 001114 854 MLGRELEMRQKLLDESQMNCAHLEN---CLHEAREEAQTHLCAADRRASEYSALRASA-------VKLR-GLFERLRSCV 922 (1154)
Q Consensus 854 ~l~~el~~~~~~l~e~~~~~~~~en---~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~-------~r~~-gl~~~~~~~~ 922 (1154)
-||-|||..+.+-++.++- ||+ |.+|--|--|.-.--|=|++-.|.-|+-.- .||. |.-+=++-
T Consensus 1069 elr~eles~r~l~Ekl~~E---L~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkka-- 1143 (1320)
T PLN03188 1069 ELRTELDASRALAEKQKHE---LDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKA-- 1143 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3666666666666666655 543 555555555555667778888887766544 2221 22222221
Q ss_pred ccCCcc----cchhhhHHHHHHhhcc-cCC-----CCCCcChHHHHHHHHHhhhhhhhhhhcHHHHHHHhHHHHHHHHH-
Q 001114 923 FASEGA----GGFADSLRTLAQSLAN-SIS-----DNEDDGTAEFRKCIRVLADRVAFLSRHREELLDKNRKVELAHEQ- 991 (1154)
Q Consensus 923 ~~p~~~----~~~~~~l~~~~~~l~~-~~~-----~~~~~~~~~f~~~i~~l~d~v~fl~~~~~~~~~r~~~~e~~~~~- 991 (1154)
.|-+|| ..|+.+|.+==..|-- --+ .+++ --.+-=+|==|+=|+--. ||+=|++..|-++.-
T Consensus 1144 aakag~kg~~~~f~~alaae~s~l~~ereker~~~~~en---k~l~~qlrdtaeav~aag----ellvrl~eaeea~~~a 1216 (1320)
T PLN03188 1144 AARAGVRGAESKFINALAAEISALKVEREKERRYLRDEN---KSLQAQLRDTAEAVQAAG----ELLVRLKEAEEALTVA 1216 (1320)
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 111244 5577665421111100 000 0001 011222233345555444 788888887765432
Q ss_pred ------HHHHHHHHHHHHHHHHHHhhhhhhhccccc
Q 001114 992 ------LKKELEEKKELVKTLYTKHQLEKQANKEKI 1021 (1154)
Q Consensus 992 ------~~ke~~~k~~~~~~l~~k~~~~~~~~~~~i 1021 (1154)
...|++.=+.+|-+|-.||..|--.=|+..
T Consensus 1217 ~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1217 QKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444444556677777755544434333
No 239
>PRK11637 AmiB activator; Provisional
Probab=23.17 E-value=1.4e+03 Score=27.71 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 001114 261 ENKVSQFKQIFDDV 274 (1154)
Q Consensus 261 ~~Kv~~L~~~i~~I 274 (1154)
..++..+...++.+
T Consensus 81 ~~qi~~~~~~i~~~ 94 (428)
T PRK11637 81 EEAISQASRKLRET 94 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 240
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.06 E-value=2.1e+02 Score=27.86 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEM 861 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~ 861 (1154)
.++.+..|...++.-...+..++.+++.+.+++..|+.+|..
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444444444444444444444444443
No 241
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=22.97 E-value=1.3e+03 Score=27.18 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=9.1
Q ss_pred HHHHHHHHhhccCchhhh
Q 001114 472 RREEFLKANSVYIPRDIL 489 (1154)
Q Consensus 472 RRekf~K~~G~~LP~dL~ 489 (1154)
.|..+...+..|. .+|
T Consensus 229 ~R~~~fdiitqY~--aIF 244 (338)
T PF04124_consen 229 YREHLFDIITQYR--AIF 244 (338)
T ss_pred HHHHHHHHHHHHH--HHc
Confidence 5556666665554 555
No 242
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=22.72 E-value=1.4e+02 Score=31.38 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001114 643 MLKAKQMQCVSYEKRIQELEQRLSDQYL 670 (1154)
Q Consensus 643 ~~~~~~~~~~~~e~RIr~LE~lL~~Q~~ 670 (1154)
+.++..++..-.|.||++||++|.+-..
T Consensus 48 eY~aAk~~~~~~e~rI~~L~~~L~~A~i 75 (157)
T PRK01885 48 DYIYGKKRLREIDRRVRFLTKRLENLKV 75 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCEE
Confidence 4555666677799999999999987655
No 243
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.62 E-value=1.6e+02 Score=29.34 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001114 825 LKLQSALADKSDQLSETQTKLKAVMEEVVMLGRE 858 (1154)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e 858 (1154)
..|+..+....++..+++.+++...+|+..|++|
T Consensus 83 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 83 EQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344444444444444444444333
No 244
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=22.61 E-value=1.4e+03 Score=27.60 Aligned_cols=141 Identities=27% Similarity=0.317 Sum_probs=68.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhhHHhhhHH----------HHHHHHHh
Q 001114 826 KLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLL-----DESQMNCAHLENCLHE----------AREEAQTH 890 (1154)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l-----~e~~~~~~~~en~~~~----------~~~~~~~~ 890 (1154)
.|+.-++.-+++.. ++.+++...+++..+-.++-..|++| |-.-.+|.||+=+|++ +-+++|.+
T Consensus 198 Pl~~~~~~id~H~~-lr~~~~~~~~~L~~~a~QfRaIQrrlL~r~kd~~p~~l~~L~~LLe~ty~~l~~~~d~~~~~~~~ 276 (377)
T PF14728_consen 198 PLQEYFEIIDQHFE-LRQELKELEEELDERAQQFRAIQRRLLTRFKDKNPAPLDNLDTLLEGTYRQLIALADEIEELQAN 276 (377)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 56666666666666666665555543 3344556666666652 23344444
Q ss_pred hhhHhHhHHHHHHHHHhhhhhh-hhhh----hhccccccC-C---cccchhhhHHH-HHHhh----cccCCC--------
Q 001114 891 LCAADRRASEYSALRASAVKLR-GLFE----RLRSCVFAS-E---GAGGFADSLRT-LAQSL----ANSISD-------- 948 (1154)
Q Consensus 891 ~~~~d~~~~~~~~l~~~~~r~~-gl~~----~~~~~~~~p-~---~~~~~~~~l~~-~~~~l----~~~~~~-------- 948 (1154)
++.|.-+.+=...|-..=.+.+ ++-+ -++ .+..| . .=.||=|...+ ++--| ..+.++
T Consensus 277 l~~a~~~L~~~~~Ll~~L~~l~~~l~~~~~~~l~-s~~~~~v~d~~e~gWEE~~~aal~~LL~t~l~k~~k~~~~~~~~~ 355 (377)
T PF14728_consen 277 LKRAGASLSCATQLLILLLKLRFNLNEDDVELLE-SVFSPSVQDSTEQGWEESVDAALSHLLRTCLLKSSKDQAKHAPSP 355 (377)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCCHHHHHHHH-HHcCCCcCcCCcCChHHHHHHHHHHHHHhcccCCccccccCCCCC
Confidence 4444433333333322222221 1100 111 22233 1 22788888763 33333 222221
Q ss_pred -CCCcChHHHHHHHHHhhhhh
Q 001114 949 -NEDDGTAEFRKCIRVLADRV 968 (1154)
Q Consensus 949 -~~~~~~~~f~~~i~~l~d~v 968 (1154)
.+--++.+|++-|.+|.||+
T Consensus 356 l~~~~d~~rlkk~i~~~~dRl 376 (377)
T PF14728_consen 356 LSIPKDTSRLKKHISLLCDRL 376 (377)
T ss_pred ccCcccHHHHHHHHHHHHHhc
Confidence 13345669999999999996
No 245
>PRK00736 hypothetical protein; Provisional
Probab=22.55 E-value=2.4e+02 Score=25.70 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHH
Q 001114 835 SDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHE 882 (1154)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~ 882 (1154)
.+.|.+||.||.....=|..|...+-.-+..+|..+.-|..|=+.|.+
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999998888889999999999999999998888888777764
No 246
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=22.46 E-value=2e+03 Score=29.31 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 001114 178 RGNLEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRS 222 (1154)
Q Consensus 178 vaNLe~~~~~lek~f~ef~~~~~qll~~~~~LL~~we~dLe~Lr~ 222 (1154)
+.-++.-....+++|+..+..|.++...|.+||..|++....|..
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~ 456 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLES 456 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777788899999999999999999999999988877654
No 247
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=22.46 E-value=1.6e+02 Score=33.59 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCCCCCCEEEEecCCccccc-----cccccccCCCC------------CceEEEEeccccCC
Q 001114 37 EAVMRFIESAAGINFNDQLVLCLDMKLEPQ-----KLLSAYRLPSD------------DKEVFIFNKLRLQS 91 (1154)
Q Consensus 37 e~LK~~Ia~~t~IP~~~QILLtsgGkl~k~-----~~L~~Y~l~~d------------enEIFVFDRrll~~ 91 (1154)
..+++||....+++...+++.|+||..++- +++++|+.|+- =.-||+|..+.+.+
T Consensus 16 s~~~eFi~~q~s~~~rrIVlVTSGGTtVPLE~ntVRFiDNFSaGtRGAaSAE~Fl~agYaVIFl~R~~Sl~P 87 (302)
T KOG2728|consen 16 SLIEEFIKLQASLQGRRIVLVTSGGTTVPLEQNTVRFIDNFSAGTRGAASAEYFLAAGYAVIFLYRERSLFP 87 (302)
T ss_pred HHHHHHHHHHhhccCceEEEEecCCeEeecccCceEeeeccCcCCccchhHHHHHhCCceEEEEeecccccc
Confidence 358999999999999889999999977653 56677776632 26899998877754
No 248
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=22.41 E-value=1.2e+03 Score=29.84 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=21.9
Q ss_pred cChHHHHHHHHHhhhhhhhhhhcHHHHHHHhHHH
Q 001114 952 DGTAEFRKCIRVLADRVAFLSRHREELLDKNRKV 985 (1154)
Q Consensus 952 ~~~~~f~~~i~~l~d~v~fl~~~~~~~~~r~~~~ 985 (1154)
+...-|++|++.|.+|-.+++ ..++.|...
T Consensus 188 ~~~~~l~~al~~L~~rp~lf~----~~l~~~~~~ 217 (618)
T PF06419_consen 188 EVSPLLRRALRYLRERPVLFN----YCLDEFAEA 217 (618)
T ss_pred ccchHHHHHHHHHhcChHHHH----HHHHHHHHH
Confidence 346799999999998866555 566666543
No 249
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.37 E-value=6.4e+02 Score=29.96 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhh
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEE-------VVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCA 893 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~ 893 (1154)
..+..+.-.++-++++-|..+...++....| -..|..+|-..+..+-..--+--|||-|++-++||.|--+-.
T Consensus 70 ~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq 149 (401)
T PF06785_consen 70 GQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ 149 (401)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HhHhHHHHH
Q 001114 894 ADRRASEYS 902 (1154)
Q Consensus 894 ~d~~~~~~~ 902 (1154)
.|....|+.
T Consensus 150 L~~l~~e~~ 158 (401)
T PF06785_consen 150 LDALQQECG 158 (401)
T ss_pred HHHHHHHHh
No 250
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.37 E-value=1.9e+03 Score=29.08 Aligned_cols=9 Identities=0% Similarity=0.054 Sum_probs=4.6
Q ss_pred HhCCCCCCE
Q 001114 46 AAGINFNDQ 54 (1154)
Q Consensus 46 ~t~IP~~~Q 54 (1154)
.|.||..+-
T Consensus 186 eWAVp~~~k 194 (1118)
T KOG1029|consen 186 EWAVPQHNK 194 (1118)
T ss_pred hccccchhh
Confidence 455555543
No 251
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.90 E-value=2.3e+03 Score=29.77 Aligned_cols=53 Identities=28% Similarity=0.308 Sum_probs=46.2
Q ss_pred hhhhHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001114 618 VLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYEKRIQELEQRLSDQYL 670 (1154)
Q Consensus 618 ~~~~a~~~t~~~l~~kde~~~~lq~~~~~~~~~~~~~e~RIr~LE~lL~~Q~~ 670 (1154)
+.+.+.++...+|.-.++.++.+++.+-..++++..+..||+.||.+|..-..
T Consensus 775 ~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~ 827 (1293)
T KOG0996|consen 775 VSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTA 827 (1293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHH
Confidence 33446678888899899999999999999999999999999999999887666
No 252
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=21.86 E-value=4.5e+02 Score=29.15 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhh
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEE----VVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCA 893 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~ 893 (1154)
+..+..|++.|....+++.++..+=+....+ +..|...-..+-.+-=|...-|..||+=+.+-|+.++.....
T Consensus 142 e~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 142 EAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4667788888888888888887765554444 667777777788888899999999999988888777665543
No 253
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=21.79 E-value=1e+02 Score=29.03 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=26.6
Q ss_pred HHHHHhCCCCCCEEEEec---CCccccccccccccCCCCCceEEEEecccc
Q 001114 42 FIESAAGINFNDQLVLCL---DMKLEPQKLLSAYRLPSDDKEVFIFNKLRL 89 (1154)
Q Consensus 42 ~Ia~~t~IP~~~QILLts---gGkl~k~~~L~~Y~l~~denEIFVFDRrll 89 (1154)
.|..+|-..+...|||=- +..|+=...|+.|++ +|+|++|....
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGi----rELYA~D~~~~ 48 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGI----RELYAWDTSRE 48 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-----SEEEEEE----
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhH----HHHHhhccccc
Confidence 478899999999999943 456777788888875 59999998844
No 254
>PRK02119 hypothetical protein; Provisional
Probab=21.72 E-value=2.8e+02 Score=25.68 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=37.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHH
Q 001114 834 KSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHE 882 (1154)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~ 882 (1154)
..+.|.+||.|+.....-|..|...+-.-+..+|..+.-|.+|-+.|.+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467888888887777778888888888888888888777776666653
No 255
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.70 E-value=1.3e+02 Score=37.00 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELE 860 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~ 860 (1154)
.+..|+..++.-+++..+++.||+.+.+|++.|+..++
T Consensus 84 qLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 84 QYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344555555555555555555555553
No 256
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.67 E-value=9e+02 Score=28.39 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEM 861 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~ 861 (1154)
.++..|+..-...-++|.+++..-..+.+|+..|+.|++.
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444443
No 257
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=21.61 E-value=4.9e+02 Score=33.73 Aligned_cols=59 Identities=29% Similarity=0.434 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh-hhhhhhhhHHhhh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVME-------EVVMLGRELEMRQKLLD-ESQMNCAHLENCL 880 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~el~~~~~~l~-e~~~~~~~~en~~ 880 (1154)
.....|+-.|.++.+.+.+++.+|.++.. +...|++||...|..-+ ..|+-|+-+|+.+
T Consensus 521 e~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl 587 (739)
T PF07111_consen 521 EVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRL 587 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666655443 36667777775554444 4444444444433
No 258
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=21.58 E-value=3.7e+02 Score=26.86 Aligned_cols=66 Identities=23% Similarity=0.296 Sum_probs=45.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhH
Q 001114 826 KLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADR 896 (1154)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~ 896 (1154)
..+.=+-+|...|+-.+=+ ..+++||..|+.||...-.++.....--.+++|+|+ +++.....-|.
T Consensus 19 q~e~~FlqKr~~LS~~kpe-~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~----d~~~~~k~~~e 84 (106)
T PF11594_consen 19 QMEAFFLQKRFELSAYKPE-QVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLS----DAQNQHKVPDE 84 (106)
T ss_pred HHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhccCchh
Confidence 3344445555555433222 356778999999998777777777777778999999 77766665554
No 259
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=21.48 E-value=1.2e+03 Score=26.34 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 163 LLREQKVQERAVEVGRGNLEQYYRVINQNYNDFMKRYSQ 201 (1154)
Q Consensus 163 Lv~Ei~vq~raL~aAvaNLe~~~~~lek~f~ef~~~~~q 201 (1154)
.+.++..|.+.+..++..|-.|.+.+-....+|-.-+..
T Consensus 30 ~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~ 68 (234)
T cd07665 30 EVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAM 68 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777777666666666554443
No 260
>PF06600 DUF1140: Protein of unknown function (DUF1140); InterPro: IPR009520 This entry is represented by Bacteriophage bIL286, Orf36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short, hypothetical phage and bacterial proteins. The function of this family is unknown.
Probab=21.27 E-value=3.2e+02 Score=26.93 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHhhc
Q 001114 177 GRGNLEQYYRVINQNYNDFMK------RYSQQQRVHSDLLANFGRDIEKLRS 222 (1154)
Q Consensus 177 AvaNLe~~~~~lek~f~ef~~------~~~qll~~~~~LL~~we~dLe~Lr~ 222 (1154)
+++|++.+++.+.+.+..... |-..++++.-...+.|...|+.+++
T Consensus 54 s~~n~efyi~E~~~~l~~l~e~Dr~~~Ws~kLHQdr~kFV~kY~~vle~yr~ 105 (107)
T PF06600_consen 54 SVGNAEFYIKEIYQKLSQLAEIDRLFHWSSKLHQDRYKFVSKYPKVLEKYRQ 105 (107)
T ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 689999999999999876554 8888888888888888888877654
No 261
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=21.05 E-value=5.4e+02 Score=22.15 Aligned_cols=49 Identities=18% Similarity=0.378 Sum_probs=38.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 001114 833 DKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLH 881 (1154)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~ 881 (1154)
+.++.|.+++..+..+.+=...+..|++.-...||....|..+-...|+
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~ 49 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLK 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888999999999999987777555444444
No 262
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=20.99 E-value=3e+02 Score=25.46 Aligned_cols=34 Identities=29% Similarity=0.319 Sum_probs=27.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001114 827 LQSALADKSDQLSETQTKLKAVMEEVVMLGRELE 860 (1154)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~ 860 (1154)
|.+.++.+++...++..|++...+|+..++.|-.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~ 34 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQ 34 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888899999999999999887777653
No 263
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=20.97 E-value=1.9e+02 Score=30.52 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001114 643 MLKAKQMQCVSYEKRIQELEQRLSDQYL 670 (1154)
Q Consensus 643 ~~~~~~~~~~~~e~RIr~LE~lL~~Q~~ 670 (1154)
+-.+..++..-.|.||+.||++|.+-..
T Consensus 46 eY~aak~~~~~le~rI~~L~~~L~~A~i 73 (156)
T TIGR01461 46 DYQYGKKRLREIDRRVRFLTKRLENLKV 73 (156)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCEE
Confidence 5555666777799999999999998765
No 264
>PHA02887 EGF-like protein; Provisional
Probab=20.94 E-value=39 Score=33.94 Aligned_cols=51 Identities=24% Similarity=0.250 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhhhh-----hhcccccccccccccceEEeeccCCcchhhhcc
Q 001114 997 EEKKELVKTLYTKHQLEK-----QANKEKISFSRLEVHEIAAFVLNSAGHYEAINR 1047 (1154)
Q Consensus 997 ~~k~~~~~~l~~k~~~~~-----~~~~~~i~~~~f~~~~~~~f~~~~~~~~~a~n~ 1047 (1154)
|.--.+||+|.+|---=. -----.|.|..+.+||||+.-+|..|||.-||-
T Consensus 11 k~ey~li~~l~~~k~~~~~s~~~vll~~n~~fy~~ri~el~~i~rn~e~h~s~~~y 66 (126)
T PHA02887 11 KNEYKLIKNLLGKKFTLATSIIIVLLIFNIAFYGIRIHELAIIKRNFESHISKFNY 66 (126)
T ss_pred hhHHHHHHHHhcCceEeeehhHHHHHHHHHhhheeehheeeeeecccccceeeeeh
Confidence 333457888877620000 000224789999999999999999999999874
No 265
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=20.90 E-value=3.6e+02 Score=24.81 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhhhhhhH
Q 001114 824 VLKLQSALADKSDQLSETQTKLKAVMEE-----------VVMLGRELEMRQKLLDESQMNCAHL 876 (1154)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~el~~~~~~l~e~~~~~~~~ 876 (1154)
+.++......-..++.+.+..|..++-+ |..|+.++..++.+|.+.+-.|-.+
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 266
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=20.87 E-value=2.5e+02 Score=32.32 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=17.4
Q ss_pred HHHHHHhhhhhhhhhHHhhhHHHH
Q 001114 861 MRQKLLDESQMNCAHLENCLHEAR 884 (1154)
Q Consensus 861 ~~~~~l~e~~~~~~~~en~~~~~~ 884 (1154)
.+.++.+-.|+=|.|||..|.+=+
T Consensus 87 ~L~~K~~~Lq~m~shLe~VLk~K~ 110 (277)
T PF15003_consen 87 YLAEKCEALQSMNSHLEAVLKEKD 110 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 566777777788888888887433
No 267
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.81 E-value=49 Score=30.00 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=39.9
Q ss_pred EecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCcccccccccccc
Q 001114 19 ISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYR 73 (1154)
Q Consensus 19 ~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~ 73 (1154)
+--=|..+.+.|..-.++.+||..|+.+||--++.++|=-...-...+=.|..|-
T Consensus 7 nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dye 61 (73)
T KOG3493|consen 7 NDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYE 61 (73)
T ss_pred hhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEE
Confidence 3345888999999999999999999999998888777643222233334455554
No 268
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.75 E-value=3.9e+02 Score=30.38 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=31.2
Q ss_pred hhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 969 AFLSRHREELLDKNRKVELAHEQLKKELEEKKELVKTL 1006 (1154)
Q Consensus 969 ~fl~~~~~~~~~r~~~~e~~~~~~~ke~~~k~~~~~~l 1006 (1154)
..+..||+-+-.|...+|.-..++..++..-+.+|++|
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L 119 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESL 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999998888888877777777654
No 269
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.71 E-value=2.4e+02 Score=27.47 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=24.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 826 KLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
........-.+.+..++.+++.+.+.+..+..++..++..|.|.|
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444455555555555555555555555555555555544
No 270
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.67 E-value=2.2e+03 Score=29.12 Aligned_cols=97 Identities=24% Similarity=0.259 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhh--------
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLC-------- 892 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~-------- 892 (1154)
-...+.|.=+++++.+.+.+++...|.-.+|++.++--|+...++|+-.+-+--|-=.-+.|+-|+++..+-
T Consensus 947 ~edaegL~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efee 1026 (1243)
T KOG0971|consen 947 IEDAEGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEE 1026 (1243)
T ss_pred HHhhhhhhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777889999999999999998889999999888888888886666644433344556666665443
Q ss_pred hHhHhHHHHHHHHHhhhhhhhhhhhhcc
Q 001114 893 AADRRASEYSALRASAVKLRGLFERLRS 920 (1154)
Q Consensus 893 ~~d~~~~~~~~l~~~~~r~~gl~~~~~~ 920 (1154)
.-|-..++++.|++.-.- |+.|+++
T Consensus 1027 tmdaLq~di~~lEsek~e---lKqrl~~ 1051 (1243)
T KOG0971|consen 1027 TMDALQADIDQLESEKAE---LKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHHHHHhhHHH---HHHHhhh
Confidence 346667788888887643 5677654
No 271
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.66 E-value=1.1e+03 Score=25.71 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001114 264 VSQFKQIFDDVKRRVEEL 281 (1154)
Q Consensus 264 v~~L~~~i~~Ik~~Vd~L 281 (1154)
+.+|.+.|.+|++.|+-|
T Consensus 201 v~~La~qir~irRlve~l 218 (222)
T KOG4514|consen 201 VEQLAQQIRQIRRLVEML 218 (222)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555543
No 272
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=20.63 E-value=1.4e+03 Score=26.94 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 243 EEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELL 282 (1154)
Q Consensus 243 ~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~Vd~L~ 282 (1154)
..+++.....+..+...+..++...+..+.-+......+.
T Consensus 130 ~~k~~~~L~~A~~SD~~l~~~~~~~~~~l~lL~~~~~~l~ 169 (356)
T cd09237 130 LVKLKKSLVEASASDEKLFSLVDPVKEDIALLLNGGSLWE 169 (356)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 4678888889999999999999999988887765555443
No 273
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=20.61 E-value=8.5e+02 Score=28.42 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=9.7
Q ss_pred cEEEEEEEEeeec
Q 001114 1072 YIVGQIVHIERQT 1084 (1154)
Q Consensus 1072 ~i~g~i~~i~~~~ 1084 (1154)
.+=|+|.+|....
T Consensus 276 ~~~G~V~~Is~~~ 288 (346)
T PRK10476 276 PFEGKVDSIGWGV 288 (346)
T ss_pred eEEEEEEEECCcc
Confidence 3679999988754
No 274
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.54 E-value=7.2e+02 Score=25.23 Aligned_cols=125 Identities=19% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHHHH------------Hh
Q 001114 840 ETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSALR------------AS 907 (1154)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~l~------------~~ 907 (1154)
+.+..|..+.+....|+.+++.++..+.+...- +-.+..-...+..|. .+
T Consensus 3 ~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~------------------~~e~~~~~e~l~~l~~~~~~~e~lvplg~ 64 (140)
T PRK03947 3 ESEQELEELAAQLQALQAQIEALQQQLEELQAS------------------INELDTAKETLEELKSKGEGKETLVPIGA 64 (140)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhcccCCCCeEEEEcCC
Q ss_pred hhhhhhhhhhhccccccCCcccchhhhHHHHHHhhcccCCCCCCcChHHHHHHHHHhhhhhhhhhhcHHHHHHHhHHHHH
Q 001114 908 AVKLRGLFERLRSCVFASEGAGGFADSLRTLAQSLANSISDNEDDGTAEFRKCIRVLADRVAFLSRHREELLDKNRKVEL 987 (1154)
Q Consensus 908 ~~r~~gl~~~~~~~~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~f~~~i~~l~d~v~fl~~~~~~~~~r~~~~e~ 987 (1154)
|+=|+|-.. ..+-|..+.|..-|++- .++.-|..|.+|+.+|..+...|.+....+
T Consensus 65 ~~yv~~~v~-~~~kV~v~lG~g~~vE~---------------------~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~-- 120 (140)
T PRK03947 65 GSFVKAKVK-DKDKVIVSLGAGYSAEK---------------------DLDEAIEILDKRKEELEKALEKLEEALQKL-- 120 (140)
T ss_pred CcEEEEEec-CCCeEEEEcCCCEEEEe---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 988 AHEQLKKELEEKKELVKTLYTKHQ 1011 (1154)
Q Consensus 988 ~~~~~~ke~~~k~~~~~~l~~k~~ 1011 (1154)
++.++.....+..++.+.+
T Consensus 121 -----~~~~~~~~~~l~~l~~~~~ 139 (140)
T PRK03947 121 -----ASRIAQLAQELQQLQQEAA 139 (140)
T ss_pred -----HHHHHHHHHHHHHHHHHhc
No 275
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.54 E-value=7.1e+02 Score=26.03 Aligned_cols=66 Identities=24% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHHHH
Q 001114 840 ETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSALR 905 (1154)
Q Consensus 840 ~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~l~ 905 (1154)
.++++|+++..+-++|..-++.+...|+.+|.|=.|++.=.+-++.+..+=..--.-.+.+++.|+
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~ 72 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLE 72 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777666666666666666677777444444444445555554444444444444433
No 276
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=20.39 E-value=1.4e+03 Score=26.78 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhH-H---HHHHHhhhhHH-HHHHHHhchHHHHH
Q 001114 362 QACDRSISKLLDFCQDKKNEMNVFVHNYMQK-ITYVSYVIKDAKLQFPV-F---REAMVRQDDIF-ADLKLVRGIGPAYR 435 (1154)
Q Consensus 362 ~~~~~eL~d~l~~~~~~KNeL~~~~~~~Lr~-IS~IQs~I~evk~~L~~-L---~e~L~rq~d~F-~~L~~V~~LP~aYg 435 (1154)
-..+.+|+..+..+-+.|..+-..++.+.+. |+.||..=.++-..+.. | .+.|..+..+. ..|.+++ -|
T Consensus 16 ~aahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir-----~G 90 (324)
T PF12126_consen 16 GAAHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIR-----TG 90 (324)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----hH
Confidence 3445567777777777787777777777777 45566554333221111 1 11111111111 1233332 48
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 436 ACLAEVVRRKASMKLYMGMAGQLAERLATKREVE 469 (1154)
Q Consensus 436 a~LiEvVRRRew~~k~~~~as~LAEeLa~lreeE 469 (1154)
..|+|.+.|..--+.+....+-|.+.|..++.+|
T Consensus 91 ~~LVekM~~YASDQEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 91 GALVEKMKLYASDQEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhhc
Confidence 8899999999999999999999999988887765
No 277
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=20.36 E-value=2.4e+02 Score=29.07 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcc
Q 001114 637 GKHIQAMLKAKQMQCVSYEKRIQELEQRLSDQYLMKQKHS 676 (1154)
Q Consensus 637 ~~~lq~~~~~~~~~~~~~e~RIr~LE~lL~~Q~~~~~~~~ 676 (1154)
+..||++....++.-+.+..||+-||--|.+.-..-+++.
T Consensus 34 Ia~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 34 IAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4488899999999999999999999999999888544433
No 278
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.18 E-value=6.6e+02 Score=25.64 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=32.2
Q ss_pred cccccChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 237 LLDFVKEE-----HLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVE 279 (1154)
Q Consensus 237 L~DfVd~e-----~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~Vd 279 (1154)
+.+|||.. -.|+..+.|.+..+..++|+.-++.--+.+...+.
T Consensus 68 vl~yID~GrNPDiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~ 115 (128)
T PF09748_consen 68 VLEYIDDGRNPDIYTREFVELVRRENQYVKGKMEAFKSFRDVLAEELA 115 (128)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888853 78899999999999999998887765554443333
Done!