Query 001114
Match_columns 1154
No_of_seqs 163 out of 224
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hpq_C ATG17, KLTH0D15642P; au 99.9 5.3E-20 1.8E-24 212.1 32.9 340 133-496 7-398 (413)
2 4efo_A Serine/threonine-protei 98.0 1.1E-05 3.9E-10 75.3 7.8 74 14-87 14-89 (94)
3 2bwf_A Ubiquitin-like protein 97.6 0.00014 4.7E-09 64.2 8.4 73 14-87 4-76 (77)
4 4eew_A Large proline-rich prot 97.6 0.00018 6.1E-09 65.5 8.3 74 11-86 14-88 (88)
5 3phx_B Ubiquitin-like protein 97.6 0.00023 7.8E-09 63.4 8.7 73 13-86 3-76 (79)
6 4dwf_A HLA-B-associated transc 97.5 0.00024 8.1E-09 65.0 8.6 74 12-87 3-77 (90)
7 3qa8_A MGC80376 protein; kinas 97.5 0.0038 1.3E-07 77.1 21.3 226 14-283 312-550 (676)
8 1v86_A DNA segment, CHR 7, way 97.5 0.00018 6.3E-09 67.0 7.4 80 6-87 9-88 (95)
9 1wx8_A Riken cDNA 4931431F19; 97.5 0.00017 5.8E-09 66.9 6.8 81 6-87 9-89 (96)
10 4hcn_B Polyubiquitin, ubiquiti 97.5 0.00022 7.6E-09 66.6 7.6 75 11-86 19-94 (98)
11 3dbh_I NEDD8; cell cycle, acti 97.5 0.00027 9.3E-09 64.0 7.9 75 11-86 9-84 (88)
12 3v6c_B Ubiquitin; structural g 97.5 0.00031 1.1E-08 64.5 8.4 75 11-86 14-89 (91)
13 3n3k_B Ubiquitin; hydrolase, p 97.4 0.00031 1E-08 63.1 7.8 73 13-86 2-75 (85)
14 2hj8_A Interferon-induced 17 k 97.4 0.00038 1.3E-08 63.7 8.2 73 14-87 4-77 (88)
15 3plu_A Ubiquitin-like modifier 97.4 0.00041 1.4E-08 64.7 8.2 73 11-84 18-91 (93)
16 2klc_A Ubiquilin-1; ubiquitin- 97.4 0.0005 1.7E-08 64.8 8.9 75 11-86 22-96 (101)
17 3mtn_B UBA80, ubcep1, ubiquiti 97.4 0.00043 1.5E-08 62.1 8.0 73 13-86 2-75 (85)
18 1ndd_A NEDD8, protein (ubiquit 97.4 0.00058 2E-08 59.7 8.5 71 15-86 1-72 (76)
19 1uel_A HHR23B, UV excision rep 97.3 0.00089 3E-08 62.2 10.1 72 15-87 1-76 (95)
20 1wx7_A Ubiquilin 3; ubiquitin- 97.3 0.0013 4.3E-08 62.3 10.7 76 11-87 14-89 (106)
21 1j8c_A Ubiquitin-like protein 97.3 0.00096 3.3E-08 65.4 10.0 75 12-87 30-104 (125)
22 3a9j_A Ubiquitin; protein comp 97.3 0.00078 2.7E-08 58.8 8.4 71 15-86 1-72 (76)
23 4fbj_B NEDD8; effector-HOST ta 97.3 0.00055 1.9E-08 62.7 7.7 71 15-86 1-72 (88)
24 2faz_A Ubiquitin-like containi 97.3 0.00071 2.4E-08 59.9 8.2 72 14-86 2-76 (78)
25 3m63_B Ubiquitin domain-contai 97.2 0.00032 1.1E-08 66.3 5.9 73 13-86 27-99 (101)
26 3m62_B UV excision repair prot 97.2 0.00047 1.6E-08 65.5 7.1 71 15-86 2-73 (106)
27 1yx5_B Ubiquitin; proteasome, 97.2 0.00079 2.7E-08 62.7 8.4 72 15-87 1-73 (98)
28 1wh3_A 59 kDa 2'-5'-oligoadeny 97.2 0.001 3.5E-08 60.2 8.6 74 12-86 5-79 (87)
29 3k9o_B Ubiquitin, UBB+1; E2-25 97.2 0.00091 3.1E-08 61.7 8.4 73 15-88 2-75 (96)
30 2l7r_A Ubiquitin-like protein 97.2 0.00056 1.9E-08 63.4 6.8 74 11-86 16-89 (93)
31 2kd0_A LRR repeats and ubiquit 97.2 0.00098 3.3E-08 60.8 8.3 72 13-85 11-82 (85)
32 2dzi_A Ubiquitin-like protein 97.2 0.0012 4E-08 58.7 8.6 73 13-86 6-79 (81)
33 2wyq_A HHR23A, UV excision rep 97.2 0.0013 4.4E-08 59.2 8.7 74 12-86 3-80 (85)
34 2kk8_A Uncharacterized protein 97.1 0.00091 3.1E-08 60.9 7.7 72 12-84 8-81 (84)
35 1ttn_A DC-UBP, dendritic cell- 97.1 0.00085 2.9E-08 63.7 7.4 76 11-87 20-96 (106)
36 3u30_A Ubiquitin, linear DI-ub 97.1 0.0011 3.7E-08 67.9 8.5 76 10-86 16-92 (172)
37 1v5t_A 8430435I17RIK protein; 97.1 0.00081 2.8E-08 61.9 6.8 71 13-84 6-80 (90)
38 1sif_A Ubiquitin; hydrophobic 97.1 0.0012 4E-08 60.5 7.8 72 14-86 9-81 (88)
39 1uh6_A Ubiquitin-like 5; beta- 97.1 0.0011 3.9E-08 62.7 7.7 70 14-84 28-98 (100)
40 1wxv_A BAG-family molecular ch 97.0 0.0014 4.7E-08 60.3 7.9 73 13-86 6-84 (92)
41 2kan_A Uncharacterized protein 97.0 0.0016 5.6E-08 60.5 8.3 76 11-87 12-88 (94)
42 1wgg_A Ubiquitin carboxyl-term 97.0 0.0011 3.9E-08 61.8 6.8 69 13-83 6-75 (96)
43 1wy8_A NP95-like ring finger p 97.0 0.0024 8.1E-08 58.1 8.7 73 13-86 6-81 (89)
44 1v5o_A 1700011N24RIK protein; 96.9 0.0021 7.1E-08 60.6 8.1 72 15-87 8-85 (102)
45 1yqb_A Ubiquilin 3; structural 96.9 0.0024 8.1E-08 60.1 8.3 76 11-87 19-94 (100)
46 2dzm_A FAS-associated factor 1 96.9 0.0015 5.2E-08 61.7 6.9 69 14-83 8-78 (100)
47 1we6_A Splicing factor, putati 96.9 0.0027 9.3E-08 60.6 8.5 75 11-86 24-103 (111)
48 3vdz_A Ubiquitin-40S ribosomal 96.8 0.0028 9.4E-08 60.7 8.5 73 13-86 34-107 (111)
49 2uyz_B Small ubiquitin-related 96.8 0.0028 9.6E-08 56.3 7.6 72 14-86 3-75 (79)
50 2kdi_A Ubiquitin, vacuolar pro 96.7 0.0036 1.2E-07 60.3 8.4 74 14-88 9-83 (114)
51 1wyw_B Ubiquitin-like protein 96.7 0.0036 1.2E-07 58.3 7.9 75 11-86 18-93 (97)
52 2ojr_A Ubiquitin; lanthide-bin 96.7 0.0066 2.3E-07 57.9 9.5 73 13-86 34-107 (111)
53 2kj6_A Tubulin folding cofacto 96.6 0.006 2E-07 57.3 8.8 76 11-87 11-96 (97)
54 3b08_A Polyubiquitin-C, ubiqui 96.6 0.005 1.7E-07 60.9 8.4 71 15-86 1-72 (152)
55 2lxa_A Ubiquitin-like protein 96.6 0.0019 6.6E-08 59.5 4.9 72 15-86 2-77 (87)
56 3b1l_X E3 ubiquitin-protein li 95.6 0.00037 1.2E-08 61.4 0.0 71 15-86 1-72 (76)
57 3rt3_B Ubiquitin-like protein 96.5 0.0061 2.1E-07 61.3 8.9 74 12-86 79-153 (159)
58 2kjr_A CG11242; UBL, ubiquitin 96.5 0.0056 1.9E-07 57.3 7.7 73 12-85 13-94 (95)
59 2fnj_B Transcription elongatio 96.5 0.0086 2.9E-07 58.3 9.1 72 15-86 3-80 (118)
60 1we7_A SF3A1 protein; structur 96.4 0.0065 2.2E-07 58.4 7.9 65 22-87 44-108 (115)
61 3l0w_B Monoubiquitinated proli 96.4 0.0084 2.9E-07 61.7 9.1 72 15-87 1-73 (169)
62 1v6e_A Cytoskeleton-associated 96.4 0.0062 2.1E-07 56.5 7.2 71 15-86 8-87 (95)
63 4dbg_A Ranbp-type and C3HC4-ty 96.3 0.0095 3.3E-07 56.8 8.3 73 12-85 22-98 (105)
64 3rt3_B Ubiquitin-like protein 96.3 0.01 3.5E-07 59.7 9.1 71 15-86 3-76 (159)
65 3u5e_m 60S ribosomal protein L 96.1 0.00094 3.2E-08 65.5 0.0 71 15-86 1-72 (128)
66 1x1m_A Ubiquitin-like protein 96.1 0.015 5E-07 55.2 8.2 73 14-87 12-100 (107)
67 3q3f_A Ribonuclease/ubiquitin 96.1 0.009 3.1E-07 62.7 7.2 72 14-86 105-177 (189)
68 1wju_A NEDD8 ultimate buster-1 96.1 0.0075 2.6E-07 57.1 5.9 68 14-82 17-87 (100)
69 3b08_A Polyubiquitin-C, ubiqui 96.0 0.019 6.6E-07 56.7 8.9 72 14-86 76-148 (152)
70 4a20_A Ubiquitin-like protein 95.9 0.013 4.3E-07 55.2 6.9 73 12-84 17-93 (98)
71 1t0y_A Tubulin folding cofacto 95.9 0.024 8.2E-07 55.1 9.0 72 14-86 6-86 (122)
72 1wia_A Hypothetical ubiquitin- 95.6 0.028 9.7E-07 51.7 7.9 72 12-87 5-78 (95)
73 4ajy_B Transcription elongatio 95.6 0.052 1.8E-06 52.7 9.9 72 15-86 3-80 (118)
74 1wgd_A Homocysteine-responsive 95.6 0.029 1E-06 51.5 7.8 72 14-86 7-85 (93)
75 3u30_A Ubiquitin, linear DI-ub 95.6 0.02 7E-07 58.4 7.4 71 15-86 97-168 (172)
76 4b6w_A Tubulin-specific chaper 95.6 0.022 7.5E-07 52.2 6.8 63 24-87 15-84 (86)
77 3u5c_f 40S ribosomal protein S 95.5 0.0024 8.1E-08 64.8 0.0 72 15-87 1-73 (152)
78 1v2y_A 3300001G02RIK protein; 95.2 0.016 5.6E-07 55.2 4.9 72 12-84 5-93 (105)
79 3ai5_A Yeast enhanced green fl 95.2 0.036 1.2E-06 62.2 8.3 76 10-86 229-305 (307)
80 2kdb_A Homocysteine-responsive 95.1 0.03 1E-06 52.7 6.1 65 11-75 20-91 (99)
81 2daf_A FLJ35834 protein; hypot 94.6 0.064 2.2E-06 52.0 7.2 72 12-84 13-86 (118)
82 1wf9_A NPL4 family protein; be 94.6 0.079 2.7E-06 50.2 7.7 70 15-86 8-94 (107)
83 3shq_A UBLCP1; phosphatase, hy 94.5 0.041 1.4E-06 62.1 6.6 71 13-84 4-77 (320)
84 2gow_A HCG-1 protein, ubiquiti 94.0 0.07 2.4E-06 52.4 6.2 78 10-87 13-100 (125)
85 2kzr_A Ubiquitin thioesterase 94.0 0.078 2.7E-06 48.1 6.0 65 20-86 7-77 (86)
86 1wgh_A Ubiquitin-like 3, HCG-1 93.9 0.22 7.4E-06 48.3 9.3 65 11-75 13-86 (116)
87 1oqy_A HHR23A, UV excision rep 93.6 0.32 1.1E-05 55.9 11.5 76 13-89 6-86 (368)
88 2eke_C Ubiquitin-like protein 92.2 0.61 2.1E-05 44.4 9.4 75 11-86 28-102 (106)
89 2io1_B Small ubiquitin-related 92.1 0.46 1.6E-05 44.1 8.4 76 12-88 5-81 (94)
90 1se9_A Ubiquitin family; ubiqu 92.0 0.58 2E-05 46.0 9.3 64 14-77 16-88 (126)
91 2dzj_A Synaptic glycoprotein S 91.9 0.37 1.3E-05 44.1 7.4 68 15-83 11-85 (88)
92 1wjn_A Tubulin-folding protein 91.8 0.36 1.2E-05 44.7 7.3 65 21-86 20-92 (97)
93 1wm3_A Ubiquitin-like protein 91.7 0.58 2E-05 41.0 8.2 69 15-84 2-71 (72)
94 2io0_B Small ubiquitin-related 91.6 0.61 2.1E-05 43.1 8.5 74 13-87 4-78 (91)
95 2xzm_9 RPS31E; ribosome, trans 91.4 0.036 1.2E-06 58.1 0.0 66 15-86 1-67 (189)
96 3a4r_A Nfatc2-interacting prot 90.7 0.77 2.6E-05 41.1 8.1 72 12-84 5-78 (79)
97 2k8h_A Small ubiquitin protein 90.0 0.81 2.8E-05 43.9 8.0 73 13-86 25-98 (110)
98 2d07_B Ubiquitin-like protein 88.6 1.6 5.3E-05 40.4 8.6 75 11-86 14-89 (93)
99 1wz0_A Ubiquitin-like protein 88.0 1.5 5.1E-05 41.6 8.1 75 12-87 22-97 (104)
100 3nmd_A CGMP dependent protein 84.0 2.5 8.6E-05 37.5 6.8 48 823-870 20-67 (72)
101 4eut_A Serine/threonine-protei 83.9 2.4 8.1E-05 48.1 8.8 75 14-88 312-388 (396)
102 1zxa_A CGMP-dependent protein 77.8 1.9 6.5E-05 37.8 3.9 46 822-867 11-56 (67)
103 3kyd_D Small ubiquitin-related 76.1 9.4 0.00032 36.8 8.6 74 12-86 38-112 (115)
104 1nkp_B MAX protein, MYC proto- 75.2 13 0.00043 33.5 8.8 67 586-666 12-78 (83)
105 3pge_A SUMO-modified prolifera 74.8 7.1 0.00024 41.2 8.1 77 12-89 27-103 (200)
106 2jee_A YIIU; FTSZ, septum, coi 73.4 19 0.00066 32.7 9.3 34 836-869 6-39 (81)
107 1ic2_A Tropomyosin alpha chain 72.0 18 0.00062 32.5 9.0 72 823-898 7-78 (81)
108 1kd8_A GABH AIV, GCN4 acid bas 70.6 6.9 0.00024 30.0 4.8 33 838-870 3-35 (36)
109 3na7_A HP0958; flagellar bioge 70.5 21 0.0007 38.7 10.8 71 820-890 88-158 (256)
110 3tix_A Ubiquitin-like protein 70.3 7.3 0.00025 40.9 6.7 75 12-87 55-129 (207)
111 3na7_A HP0958; flagellar bioge 70.1 1.1E+02 0.0038 32.9 16.5 58 826-883 15-72 (256)
112 4gkw_A Spindle assembly abnorm 69.7 87 0.003 30.7 14.1 39 989-1027 121-162 (167)
113 3nmd_A CGMP dependent protein 69.6 6.5 0.00022 34.9 5.3 40 825-864 29-68 (72)
114 2daj_A KIAA0977 protein, COBL- 65.4 25 0.00087 32.2 8.3 68 17-88 14-84 (91)
115 3s84_A Apolipoprotein A-IV; fo 64.1 94 0.0032 34.1 14.5 54 954-1010 200-254 (273)
116 3m48_A General control protein 63.6 7.7 0.00026 29.3 3.8 30 839-868 3-32 (33)
117 1kd8_B GABH BLL, GCN4 acid bas 62.6 13 0.00046 28.5 5.0 33 838-870 3-35 (36)
118 1nkp_A C-MYC, MYC proto-oncoge 61.7 37 0.0013 31.1 9.0 68 586-666 16-83 (88)
119 3hnw_A Uncharacterized protein 60.3 24 0.00084 35.0 8.1 45 827-871 66-110 (138)
120 3ghg_A Fibrinogen alpha chain; 59.7 1.8E+02 0.0062 34.7 16.2 34 170-203 58-91 (562)
121 1i84_S Smooth muscle myosin he 58.5 29 0.00099 45.6 10.7 57 821-877 856-912 (1184)
122 1wgy_A RAP guanine nucleotide 58.4 71 0.0024 30.3 10.4 78 14-92 11-92 (104)
123 1nlw_A MAD protein, MAX dimeri 58.0 43 0.0015 30.1 8.6 68 586-666 11-78 (80)
124 2jxx_A Nfatc2-interacting prot 57.5 33 0.0011 32.0 8.0 74 10-84 21-96 (97)
125 2wq1_A General control protein 55.6 17 0.00057 27.5 4.4 31 838-868 2-32 (33)
126 2r2v_A GCN4 leucine zipper; co 55.4 21 0.00071 27.2 4.9 31 838-868 3-33 (34)
127 4emc_A Monopolin complex subun 54.5 26 0.0009 36.4 7.4 137 819-985 17-175 (190)
128 3c3f_A Alpha/beta peptide with 54.3 19 0.00066 27.3 4.5 31 838-868 3-33 (34)
129 1ic2_A Tropomyosin alpha chain 54.1 49 0.0017 29.6 8.4 61 825-885 16-76 (81)
130 2b9c_A Striated-muscle alpha t 53.0 73 0.0025 31.9 10.2 93 822-918 52-145 (147)
131 3u1c_A Tropomyosin alpha-1 cha 51.6 1.2E+02 0.0041 28.3 10.9 33 836-868 30-62 (101)
132 3c3g_A Alpha/beta peptide with 51.5 23 0.00077 26.8 4.5 31 838-868 2-32 (33)
133 3ghg_A Fibrinogen alpha chain; 51.4 1.2E+02 0.0043 36.0 13.1 33 384-416 124-156 (562)
134 3s84_A Apolipoprotein A-IV; fo 51.0 2.8E+02 0.0095 30.3 24.5 13 313-325 129-141 (273)
135 2oqq_A Transcription factor HY 51.0 31 0.001 27.5 5.4 36 823-858 4-39 (42)
136 3zbh_A ESXA; unknown function, 51.0 52 0.0018 29.3 8.2 34 241-274 9-42 (99)
137 2pjh_A Protein NPL4, nuclear p 51.0 20 0.0007 32.0 5.3 62 20-83 11-77 (80)
138 1uo4_A General control protein 50.6 22 0.00074 27.1 4.3 31 838-868 3-33 (34)
139 1am9_A Srebp-1A, protein (ster 50.5 38 0.0013 30.5 7.0 61 587-662 17-77 (82)
140 2dzk_A UBX domain-containing p 50.4 65 0.0022 30.4 9.0 74 2-75 2-80 (109)
141 3u59_A Tropomyosin beta chain; 50.1 1.3E+02 0.0045 27.9 10.9 36 837-872 31-66 (101)
142 3u59_A Tropomyosin beta chain; 50.0 1.1E+02 0.0037 28.5 10.3 72 824-899 11-82 (101)
143 4ath_A MITF, microphthalmia-as 49.4 65 0.0022 29.4 8.2 62 591-664 7-78 (83)
144 4gkw_A Spindle assembly abnorm 48.7 93 0.0032 30.5 9.6 59 830-897 40-98 (167)
145 2v66_B Nuclear distribution pr 48.1 1.8E+02 0.0062 27.9 11.5 61 821-881 2-66 (111)
146 2bni_A General control protein 47.3 25 0.00084 26.8 4.2 31 838-868 3-33 (34)
147 2fxo_A Myosin heavy chain, car 47.0 1.3E+02 0.0045 29.1 10.8 80 820-903 18-104 (129)
148 1i84_S Smooth muscle myosin he 46.7 44 0.0015 43.8 9.6 59 820-878 862-920 (1184)
149 4dnd_A Syntaxin-10, SYN10; str 46.2 1.4E+02 0.0046 29.3 10.7 41 422-462 88-128 (130)
150 3tnu_B Keratin, type II cytosk 46.0 40 0.0014 32.8 6.9 36 849-884 35-70 (129)
151 2oxj_A Hybrid alpha/beta pepti 45.3 35 0.0012 25.9 4.7 31 838-868 3-33 (34)
152 3u1c_A Tropomyosin alpha-1 cha 45.0 1.5E+02 0.005 27.7 10.3 72 824-899 11-82 (101)
153 1go4_E MAD1 (mitotic arrest de 44.4 28 0.00096 32.8 5.2 71 577-663 21-96 (100)
154 3ol1_A Vimentin; structural ge 44.3 1.8E+02 0.0063 27.8 11.2 76 821-896 19-108 (119)
155 3gwk_C SAG1039, putative uncha 44.2 1.7E+02 0.0059 26.0 11.7 34 241-274 8-41 (98)
156 3ljm_A Coil Ser L9C; de novo d 43.5 23 0.00079 25.5 3.4 23 645-667 4-26 (31)
157 2v71_A Nuclear distribution pr 41.7 63 0.0022 33.7 7.9 57 821-877 55-115 (189)
158 1dh3_A Transcription factor CR 40.4 28 0.00094 29.2 4.1 35 833-867 19-53 (55)
159 2ve7_A Kinetochore protein HEC 39.8 38 0.0013 37.9 6.4 39 825-863 174-212 (315)
160 2dfs_A Myosin-5A; myosin-V, in 39.5 41 0.0014 43.8 7.5 47 822-868 928-978 (1080)
161 3hnw_A Uncharacterized protein 39.4 91 0.0031 30.9 8.4 56 823-878 76-131 (138)
162 3tnu_A Keratin, type I cytoske 38.8 45 0.0015 32.5 6.0 11 873-883 61-71 (131)
163 3oja_B Anopheles plasmodium-re 38.8 1.1E+02 0.0039 36.2 10.9 42 969-1010 540-581 (597)
164 4ioe_A Secreted protein ESXB; 38.5 2E+02 0.0069 25.2 11.7 34 241-274 9-42 (93)
165 2p4v_A Transcription elongatio 38.4 46 0.0016 33.6 6.2 62 575-670 9-74 (158)
166 2xdj_A Uncharacterized protein 38.1 88 0.003 28.4 7.3 51 821-871 5-55 (83)
167 3v7o_A Minor nucleoprotein VP3 37.6 6.9 0.00024 41.6 0.0 73 12-85 19-91 (227)
168 1x8y_A Lamin A/C; structural p 37.3 91 0.0031 28.3 7.4 69 824-903 5-77 (86)
169 3m91_A Proteasome-associated A 37.3 83 0.0028 26.1 6.4 43 821-863 8-50 (51)
170 3s4r_A Vimentin; alpha-helix, 37.1 2.2E+02 0.0074 26.2 10.0 72 837-910 10-88 (93)
171 1uii_A Geminin; human, DNA rep 36.4 82 0.0028 28.7 6.7 46 825-870 35-80 (83)
172 3m9b_A Proteasome-associated A 36.3 45 0.0015 36.3 6.0 43 821-863 53-95 (251)
173 3efg_A Protein SLYX homolog; x 36.0 72 0.0025 28.6 6.4 49 822-870 14-62 (78)
174 2dgc_A Protein (GCN4); basic d 35.5 40 0.0014 29.0 4.5 36 832-867 26-61 (63)
175 2dfs_A Myosin-5A; myosin-V, in 35.4 1.6E+02 0.0054 38.4 11.9 57 821-877 959-1018(1080)
176 2l76_A Nfatc2-interacting prot 34.3 1.1E+02 0.0039 28.4 7.6 72 12-84 19-90 (95)
177 2k48_A Nucleoprotein; viral pr 33.3 2.7E+02 0.0091 26.4 9.8 73 798-870 11-95 (107)
178 3fpp_A Macrolide-specific effl 33.3 1.4E+02 0.0049 32.7 9.8 43 826-868 66-108 (341)
179 4ati_A MITF, microphthalmia-as 33.3 65 0.0022 31.0 6.1 67 586-664 37-113 (118)
180 3swk_A Vimentin; cytoskeleton, 33.2 98 0.0033 28.2 6.9 30 856-885 48-77 (86)
181 3m0d_C TNF receptor-associated 32.9 1.4E+02 0.0048 25.7 7.5 36 834-869 4-39 (65)
182 4dk0_A Putative MACA; alpha-ha 32.8 1.2E+02 0.004 33.8 9.1 95 827-929 68-165 (369)
183 3vkg_A Dynein heavy chain, cyt 32.7 7.9E+02 0.027 36.0 18.8 169 822-1014 1906-2086(3245)
184 1sb0_B Protein C-MYB; CREB-bin 32.6 23 0.00078 25.1 1.9 12 655-666 2-13 (26)
185 2dhz_A RAP guanine nucleotide 32.1 1.2E+02 0.0041 29.5 7.6 78 14-92 11-98 (120)
186 3bas_A Myosin heavy chain, str 32.0 2.2E+02 0.0074 25.9 9.1 39 820-858 19-57 (89)
187 3uf8_A Ubiquitin-like protein 31.3 1E+02 0.0034 32.3 7.7 75 11-86 18-92 (209)
188 1x9b_A Hypothetical membrane p 30.5 36 0.0012 28.0 3.1 28 852-886 22-49 (53)
189 3hhm_B NISH2 P85alpha; PI3KCA, 30.3 6.6E+02 0.023 28.6 14.9 52 359-410 201-252 (373)
190 1grj_A GREA protein; transcrip 29.8 96 0.0033 31.1 6.9 23 648-670 52-74 (158)
191 1l8d_A DNA double-strand break 29.8 3.4E+02 0.012 25.1 10.6 42 830-871 4-45 (112)
192 3htk_A Structural maintenance 29.6 1.6E+02 0.0056 24.4 7.3 45 825-869 8-52 (60)
193 1jcd_A Major outer membrane li 29.3 1.7E+02 0.0057 24.4 7.0 44 824-867 6-49 (52)
194 3uul_A Utrophin; spectrin repe 29.0 1.3E+02 0.0045 27.4 7.3 71 824-894 4-77 (118)
195 2efr_A General control protein 28.9 4.6E+02 0.016 26.4 11.8 60 822-881 70-129 (155)
196 2al3_A TUG long isoform; TUG U 28.8 78 0.0027 29.3 5.4 61 16-76 12-72 (90)
197 3uun_A Dystrophin; triple heli 28.7 2.3E+02 0.0079 25.6 9.0 97 821-917 1-100 (119)
198 3a7p_A Autophagy protein 16; c 28.5 3.7E+02 0.013 27.1 10.6 52 821-872 67-125 (152)
199 1ci6_A Transcription factor AT 28.2 1.1E+02 0.0038 26.2 6.0 22 847-868 41-62 (63)
200 1t2k_D Cyclic-AMP-dependent tr 27.7 1.1E+02 0.0038 25.8 5.9 25 837-861 23-47 (61)
201 3qh9_A Liprin-beta-2; coiled-c 27.7 1.7E+02 0.0057 26.6 7.1 46 822-867 26-71 (81)
202 4etp_A Kinesin-like protein KA 27.5 77 0.0026 36.6 6.5 9 909-917 65-73 (403)
203 1vd2_A Protein kinase C, IOTA 27.4 1.3E+02 0.0045 27.6 6.7 49 11-59 3-51 (89)
204 3g67_A Methyl-accepting chemot 27.3 5.6E+02 0.019 26.9 20.7 39 241-279 116-154 (213)
205 2hy6_A General control protein 27.1 96 0.0033 23.6 4.6 31 838-868 3-33 (34)
206 2efr_A General control protein 27.1 3.8E+02 0.013 27.1 10.6 66 850-919 21-87 (155)
207 3qwe_A GMIP, GEM-interacting p 27.0 1.3E+02 0.0045 33.1 7.9 81 835-919 85-177 (279)
208 3htk_A Structural maintenance 26.9 2.1E+02 0.0071 23.7 7.4 42 837-881 6-47 (60)
209 3o0z_A RHO-associated protein 26.7 2.7E+02 0.0093 28.5 9.5 40 977-1019 122-161 (168)
210 2v4h_A NF-kappa-B essential mo 25.7 1.9E+02 0.0066 27.6 7.6 46 820-872 22-67 (110)
211 3viq_B Mating-type switching p 25.6 1.7E+02 0.0059 26.7 7.0 67 839-921 4-70 (85)
212 3ol1_A Vimentin; structural ge 25.4 4.2E+02 0.014 25.2 10.3 40 837-879 21-60 (119)
213 1deq_A Fibrinogen (alpha chain 25.3 8.1E+02 0.028 28.1 14.0 15 258-272 63-77 (390)
214 2lw1_A ABC transporter ATP-bin 25.2 1.9E+02 0.0064 26.2 7.4 19 852-870 58-76 (89)
215 3tnu_B Keratin, type II cytosk 24.7 3.3E+02 0.011 26.2 9.5 61 160-220 34-94 (129)
216 2nps_D Syntaxin-6; vesicle fus 24.6 2E+02 0.007 25.6 7.4 62 829-901 12-73 (82)
217 2d1l_A Metastasis suppressor p 24.1 7.1E+02 0.024 26.9 14.3 20 432-451 189-208 (253)
218 3a7p_A Autophagy protein 16; c 23.5 3.5E+02 0.012 27.2 9.4 26 835-860 67-92 (152)
219 1m1j_A Fibrinogen alpha subuni 23.5 7.3E+02 0.025 29.1 13.2 109 293-419 52-160 (491)
220 3ok8_A Brain-specific angiogen 23.2 4.7E+02 0.016 27.8 11.0 96 826-921 72-187 (222)
221 1jnm_A Proto-oncogene C-JUN; B 23.2 71 0.0024 27.1 3.9 31 835-865 21-51 (62)
222 2wvr_A Geminin; DNA replicatio 23.2 1.4E+02 0.0049 31.3 6.7 47 824-870 103-149 (209)
223 3brv_A Inhibitor of nuclear fa 22.7 26 0.0009 28.8 1.0 27 861-887 7-33 (48)
224 3qfl_A MLA10; coiled-coil, (CC 22.1 2.4E+02 0.0082 26.5 7.8 56 843-902 19-79 (115)
225 3tnu_A Keratin, type I cytoske 21.9 3.1E+02 0.01 26.5 8.7 62 160-221 36-97 (131)
226 4h22_A Leucine-rich repeat fli 21.9 2.2E+02 0.0074 27.0 7.0 45 837-881 31-75 (103)
227 1deq_A Fibrinogen (alpha chain 21.9 9.4E+02 0.032 27.6 15.5 18 301-318 140-157 (390)
228 1gk4_A Vimentin; intermediate 21.7 4.3E+02 0.015 23.6 9.8 66 827-903 6-75 (84)
229 3efg_A Protein SLYX homolog; x 21.5 1.6E+02 0.0054 26.4 5.9 50 835-884 13-62 (78)
230 3i00_A HIP-I, huntingtin-inter 21.5 3.5E+02 0.012 26.2 8.7 63 820-882 13-79 (120)
231 1jcd_A Major outer membrane li 21.4 2.4E+02 0.0083 23.5 6.5 30 831-860 6-35 (52)
232 2wt7_B Transcription factor MA 21.3 1.4E+02 0.0048 27.6 5.6 39 834-872 46-84 (90)
233 1hlo_A Protein (transcription 21.2 2.3E+02 0.0077 25.1 6.9 56 586-655 22-77 (80)
234 2pnv_A Small conductance calci 21.2 1E+02 0.0034 24.8 4.0 33 821-853 8-40 (43)
235 1x79_B RAB GTPase binding effe 21.0 1.9E+02 0.0066 27.7 6.7 49 838-893 1-49 (112)
236 1zxa_A CGMP-dependent protein 20.6 76 0.0026 27.8 3.5 35 818-852 21-55 (67)
237 1ci6_A Transcription factor AT 20.1 1.9E+02 0.0064 24.7 5.9 32 825-856 26-57 (63)
238 1gd2_E Transcription factor PA 20.1 1.3E+02 0.0043 26.6 4.8 38 833-870 26-63 (70)
No 1
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=99.87 E-value=5.3e-20 Score=212.12 Aligned_cols=340 Identities=12% Similarity=0.143 Sum_probs=216.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHH
Q 001114 133 PSYERQFRYHYHRGHAIYIRTQAKIEM-------CERLLREQKVQERAVEVGRGNLEQYY--RVINQ---NYNDFMKRYS 200 (1154)
Q Consensus 133 ~sye~lfr~~l~~A~AL~~~a~~~~e~-------ce~Lv~Ei~vq~raL~aAvaNLe~~~--~~lek---~f~ef~~~~~ 200 (1154)
..|-..-+..+.+|+.++..|+..... +...++...++..|+.-....|..++ ..|.. .++....-|.
T Consensus 7 ~~~~~~A~~tL~~AQ~lC~~A~~~l~~t~~~L~~~~~~~~k~~Fl~~~l~~Q~~~L~~~ilr~~i~~~li~~e~~~~~f~ 86 (413)
T 4hpq_C 7 EKLLENSRKFLTGAKLICQESNDHLTTTKLRIREWQKFQSKLHFVLDCIQQQTKFLSEILLREGIGRNLIEEEWSQTVLV 86 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 346555666778888888777664433 44455566666666666666665322 12222 1222222344
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcCCCCcccccccccccccccChh-------HHHHH--HHH-HHHHHHHHHHHHHHH---
Q 001114 201 QQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDFVKEE-------HLRKS--AET-CSSSHRQFENKVSQF--- 267 (1154)
Q Consensus 201 qll~~~~~LL~~we~dLe~Lr~IpIhpaL~~e~~~TL~DfVd~e-------~Lrk~--ae~-C~~s~~~f~~Kv~~L--- 267 (1154)
++...........+..|+.|+.+++.+.+ ++.++|+||||.+ +|+++ .+. .......|..-+..+
T Consensus 87 ~lv~~l~~~~~~L~~~~~~Lr~T~v~~~~--~~~k~L~DFIs~~sv~~L~~kLke~p~I~~~i~~i~~~y~~~l~~~~~~ 164 (413)
T 4hpq_C 87 RLVNDMKFWQNEITKMMNKLDNITNEIDQ--QHNSKLGDFISRDSSHILDSKLNEIPTIRKQVENITRQYQTMLAKVQSQ 164 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCCSS--SCCCTTTTSSCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccc--CCCCcHHHHcCHhhHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777888899999999999999998 3338999999975 44444 332 344445555444444
Q ss_pred --HHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhccccccccCCCCccccccc
Q 001114 268 --KQIFDDVKRRVEELLNTRASLPIKNLEMMIKEHQRFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSA 345 (1154)
Q Consensus 268 --~~~i~~Ik~~Vd~L~~~~~~~sl~~Le~~l~e~~~li~Eq~siaqsL~kD~e~V~kL~dd~~~~~lssS~~s~davs~ 345 (1154)
+..+..++..+...+...+..+..-....+.+...+-.++.++..+|.++|+-...+.+.
T Consensus 165 l~~~~L~~L~~~~~~~~~~~~~~~~~~~~~ll~el~~le~elA~~L~SLT~HyDqC~~l~~~------------------ 226 (413)
T 4hpq_C 165 LVESRMKGLRDEFSSKFGDQCRENLKLNEEFTNEADQLEQELADFLKSFTDHFDKCSALSSR------------------ 226 (413)
T ss_dssp HHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT------------------
T ss_pred HHHhhHHHHHHHHHhccCCCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------
Confidence 334444544444433333222222122345556666788999999999999877666532
Q ss_pred cCchhhhhhccchHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHH---HHHHHHHHHHHHHHHH
Q 001114 346 LGPMYDVHDKSHLPRMQACDRSISKLLDFCQDKK---------------------NEMNVF---VHNYMQKITYVSYVIK 401 (1154)
Q Consensus 346 Ls~ma~~Htk~lLPsL~~~~~eL~d~l~~~~~~K---------------------NeL~~~---~~~~Lr~IS~IQs~I~ 401 (1154)
++...++.+++..|...+.++.+++..+...- ..+... ....++.....-..+.
T Consensus 227 --~~s~~e~~elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~e~l~i~~ 304 (413)
T 4hpq_C 227 --SVSPEDAQNLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFE 304 (413)
T ss_dssp --SCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCChHhHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 22233345566666666666655555544321 111111 1111111111222334
Q ss_pred HHhhhhhHHHHHHHhhhhHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 402 DAKLQFPVFREAMVRQDDIFADLKL-VRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKAN 480 (1154)
Q Consensus 402 evk~~L~~L~e~L~rq~d~F~~L~~-V~~LP~aYga~LiEvVRRRew~~k~~~~as~LAEeLa~lreeE~kRRekf~K~~ 480 (1154)
++...|..|++.+..+.+.|..|.. ..++..+|.++|+|+.|||.+.+++.+.+++++++|++++++|.++|+.|+..+
T Consensus 305 ~i~e~l~~fk~~~~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~~~~L~~l~e~d~~~Re~F~~~~ 384 (413)
T 4hpq_C 305 GISALIQKFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQLEQINTADLRERQMFLLEN 384 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566677777777778888884 478999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhhhccCCCCC
Q 001114 481 SVYIPRDILGSMGLYD 496 (1154)
Q Consensus 481 G~~LP~dL~~~~GL~d 496 (1154)
|+|||.++| ||+-|
T Consensus 385 G~yLP~diw--pg~id 398 (413)
T 4hpq_C 385 GNYLPETIW--PDEIG 398 (413)
T ss_dssp SSSSCGGGS--TTTSS
T ss_pred cccCChhhC--CCccc
Confidence 999999999 57644
No 2
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.00 E-value=1.1e-05 Score=75.32 Aligned_cols=74 Identities=11% Similarity=0.167 Sum_probs=65.6
Q ss_pred eEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecC-C-ccccccccccccCCCCCceEEEEecc
Q 001114 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD-M-KLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 14 ~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsg-G-kl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
-++||+..+|....+.+.+-.++..||+.|+++||||+++|.||..| + .+.+......|..-+.++|||||+|.
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~~ 89 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSLE 89 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEECC
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEecC
Confidence 48999999999999999999999999999999999999999999876 2 46677777788766678999999975
No 3
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=97.64 E-value=0.00014 Score=64.18 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=63.2
Q ss_pred eEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 14 ~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
.|.|++-.+|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|..+.
T Consensus 4 ~m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~-~g~~i~l~~~~ 76 (77)
T 2bwf_A 4 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQ-DGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCC-TTCEEEEEECC
T ss_pred EEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCC-CCCEEEEEEcC
Confidence 47777766999999999999999999999999999999999999876667778899999976 56789988764
No 4
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=97.57 E-value=0.00018 Score=65.51 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=63.2
Q ss_pred cCCeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 11 HEGKLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 11 ~~~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.+..|.|++-. +|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++ +...|+|.-|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i--~g~~i~lv~R 88 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV--GGKVIHLVER 88 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC--TTEEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC--CCcEEEEEEC
Confidence 45678888876 79999999999999999999999999999999999987766777889999998 3678887643
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=97.56 E-value=0.00023 Score=63.43 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=63.6
Q ss_pred CeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 13 GKLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 13 ~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
+.|+|++-. +|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|.=|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~-~~~~l~l~~r 76 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLK-PLSTVFMNLR 76 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCC-TTCEEEEEEC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCC-CCCEEEEEEe
Confidence 468888865 899999999999999999999999999999999999977777788999999975 5667888754
No 6
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=97.53 E-value=0.00024 Score=64.96 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=64.6
Q ss_pred CCeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 12 EGKLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 12 ~~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
+..|+|++-. +|..+.+++....+|.+||..|+..++||+++|-|+..|..|.....|..|++ +...|+|.-|.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i--~g~~i~l~~~~ 77 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV--GGKVIHLVERA 77 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC--TTEEEEEEECC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC--CCcEEEEEecC
Confidence 4578888865 79999999999999999999999999999999999987766777889999998 46889998763
No 7
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=97.50 E-value=0.0038 Score=77.14 Aligned_cols=226 Identities=18% Similarity=0.188 Sum_probs=131.7
Q ss_pred eEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCC-cccccccccccc--------CCCCCceEEEE
Q 001114 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDM-KLEPQKLLSAYR--------LPSDDKEVFIF 84 (1154)
Q Consensus 14 ~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgG-kl~k~~~L~~Y~--------l~~denEIFVF 84 (1154)
.+.+|+.+++....+....-.++.+|+.+|...||||..+|.++.+.| .+.+......+. ...++.-||+|
T Consensus 312 il~~f~~~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (676)
T 3qa8_A 312 LLSVMNMVSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLF 391 (676)
T ss_dssp EEECCCSSSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEEC
T ss_pred ccccccccccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEE
Confidence 478999999999999888999999999999999999999999998855 444543332221 13457899999
Q ss_pred eccccCCCC---CCCCCCcccccccCCCCCCCCCCCCCCCCCCCChhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 85 NKLRLQSNS---PPPSPEQVDVLEVADPPPPALSQDPHPLDDAPDPALKALPSYERQFRYHYHRGHAIYIRTQAKIEMCE 161 (1154)
Q Consensus 85 DRrll~~~~---~~p~~e~l~ipe~~~pP~p~~s~~pspL~ds~dp~lraL~sye~lfr~~l~~A~AL~~~a~~~~e~ce 161 (1154)
||....... +++.|+.+...-. .|.. .|.- ..+ +. -||.|+. .|.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~--------~~~~------~~~-------~~--~~~~~~~--------~~~ 439 (676)
T 3qa8_A 392 DNRKTVYEPQISLPAHPESVSIVLQ-DPKR--------PLTY------THL-------RR--VWGQIWQ--------TIR 439 (676)
T ss_dssp SSCC------CCCCCCCCCHHHHHH-TTCC--------CCCC------SCC-------TT--HHHHHHH--------HHH
T ss_pred ecccccccCCCCCCCCChHHHHHHh-hhhh--------cCCH------HHH-------HH--HHHHHHH--------HHH
Confidence 996654322 1233332110000 0100 0100 111 11 4666654 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCccccccccccccccc
Q 001114 162 RLLREQKVQERAVEVGRGNLEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDFV 241 (1154)
Q Consensus 162 ~Lv~Ei~vq~raL~aAvaNLe~~~~~lek~f~ef~~~~~qll~~~~~LL~~we~dLe~Lr~IpIhpaL~~e~~~TL~DfV 241 (1154)
.+...-.-..+|-.||.-||=.|-..+.+.-+......+++..++.=.-....-||+.-.. +.+-+ ..
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-~~ 507 (676)
T 3qa8_A 440 ALKEDCARLLQGQRTSMVNLLRYNTELSKKKNSMTSECEQLKAKLDFFRSSIQIDLEKYSE-----------QMEFG-IT 507 (676)
T ss_dssp HHHHHHHHHHHHHHHHTSSHHHHHHTTTTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----------CSSSC-CC
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----------HHhcC-Cc
Confidence 4455555677888899999999999998888888888877766544444444555544221 11122 33
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 242 KEEHLRKSAETCSSS-HRQFENKVSQFKQIFDDVKRRVEELLN 283 (1154)
Q Consensus 242 d~e~Lrk~ae~C~~s-~~~f~~Kv~~L~~~i~~Ik~~Vd~L~~ 283 (1154)
++.-++.|.+-=.++ +-...++|..+...+-.+..++-+|-.
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (676)
T 3qa8_A 508 SEKLLSAWREMEQAVELCGREREVQALVDKMMALQTDSVDLQR 550 (676)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHTHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhcc
Confidence 444555555421111 111123556666666666666655543
No 8
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.49 E-value=0.00018 Score=67.02 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=65.6
Q ss_pred ccccccCCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEe
Q 001114 6 TEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (1154)
Q Consensus 6 ~~~~~~~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFD 85 (1154)
++..+....|.|++-++|+.+.+++....+|.+||..|+..++||+++|-|+..|..+ .+..|..|++. +...|+|..
T Consensus 9 ~~~~~~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~-~g~~i~lv~ 86 (95)
T 1v86_A 9 AGGGVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVT-SGAKIMVVG 86 (95)
T ss_dssp CCCCCCCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCC-TTEEEEECC
T ss_pred CCCCCCCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCC-CCCEEEEEe
Confidence 3344455678999999999999999999999999999999999999999999755545 66799999875 556788876
Q ss_pred cc
Q 001114 86 KL 87 (1154)
Q Consensus 86 Rr 87 (1154)
+.
T Consensus 87 ~~ 88 (95)
T 1v86_A 87 ST 88 (95)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 9
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.47 E-value=0.00017 Score=66.91 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=67.0
Q ss_pred ccccccCCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEe
Q 001114 6 TEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (1154)
Q Consensus 6 ~~~~~~~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFD 85 (1154)
++....+..|.|++-..|..+.+++....+|.+||..|+..++||+++|-|+..|..|....+|..|++. +...|+|+.
T Consensus 9 ~~~~~~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~-~g~~i~l~~ 87 (96)
T 1wx8_A 9 SGREPSSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGIL-DGSTVHVVV 87 (96)
T ss_dssp CCSCCCSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCC-TTEEEECCB
T ss_pred cCCCCCCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCC-CCCEEEEEE
Confidence 3343355679999988899999999999999999999999999999999999876667677899999875 556788876
Q ss_pred cc
Q 001114 86 KL 87 (1154)
Q Consensus 86 Rr 87 (1154)
|.
T Consensus 88 ~~ 89 (96)
T 1wx8_A 88 RS 89 (96)
T ss_dssp CC
T ss_pred eC
Confidence 53
No 10
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00022 Score=66.64 Aligned_cols=75 Identities=16% Similarity=0.340 Sum_probs=63.6
Q ss_pred cCCeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 11 ~~~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.+..|+|++- .+|..+.+++....+|.+||..|+..++||+++|-|+..|..|.....|..|++. +...|+|.-|
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~-~g~~i~l~~r 94 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 94 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCC-TTEEEEEECB
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCC-CCCEEEEEEe
Confidence 4557888886 6999999999999999999999999999999999999877777788899999875 5678888755
No 11
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=97.45 E-value=0.00027 Score=63.96 Aligned_cols=75 Identities=17% Similarity=0.361 Sum_probs=65.0
Q ss_pred cCCeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 11 HEGKLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 11 ~~~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.+..|.|++-. +|..+.+++....+|.+||..|+..++||+++|-|+..|..+....+|..|++. +...|+|+=|
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~-~~~~i~l~~r 84 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL-GGSVLHLVLR 84 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCC-TTCEEEECCC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCC-CCCEEEEEEe
Confidence 45678998874 899999999999999999999999999999999999977777788999999875 5667888654
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=97.45 E-value=0.00031 Score=64.54 Aligned_cols=75 Identities=19% Similarity=0.364 Sum_probs=65.2
Q ss_pred cCCeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 11 ~~~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.+..|+|++- .+|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|.-|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~-~g~~i~l~~r 89 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 89 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCC-TTCEEEEECC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCC-CCCEEEEEEe
Confidence 3557889886 7999999999999999999999999999999999999977778788999999975 5667888754
No 13
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=97.42 E-value=0.00031 Score=63.10 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=61.9
Q ss_pred CeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 13 ~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
..|+|++- .+|..+.+++....+|.+||..|+..++||+++|-|+..|..+....+|.+|++. +...|+|.=|
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~-~~~~i~l~~r 75 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIH-NHSALYLLLK 75 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCC-TTCEEEEEEC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCC-CCCEEEEEEe
Confidence 45777776 5899999999999999999999999999999999999976667778899999875 5678888765
No 14
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=97.40 E-value=0.00038 Score=63.70 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=62.3
Q ss_pred eEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 14 KLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 14 ~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
.|.|++-. +|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|..+.
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~-~g~~i~l~~~~ 77 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLK-PLSTVFMNLRL 77 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCS-TTCEEEEEEC-
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCC-CCCEEEEEEEc
Confidence 57777764 699999999999999999999999999999999999876667778899999975 56788888753
No 15
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=97.38 E-value=0.00041 Score=64.74 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=61.6
Q ss_pred cCCeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 11 ~~~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
.+.-+.|++= -+|..+.+++.+..+|.+||+-|+.+.|||+++|.|.-+|-.+....+|++|++. +...|.+|
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~-dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVH-DQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCC-TTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCC-CCCEEEEE
Confidence 4557888875 5999999999999999999999999999999999999866667777899999976 55566666
No 16
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=97.38 E-value=0.0005 Score=64.76 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=64.2
Q ss_pred cCCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 11 ~~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
....|.|++-..|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|..|
T Consensus 22 ~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~-~g~~I~l~~~ 96 (101)
T 2klc_A 22 HPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIH-DGLTVHLVIK 96 (101)
T ss_dssp -CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCC-TTCEEEEEEC
T ss_pred CCCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCC-CCCEEEEEEc
Confidence 34568888877799999999999999999999999999999999999876566677899999875 5668888875
No 17
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=97.36 E-value=0.00043 Score=62.05 Aligned_cols=73 Identities=19% Similarity=0.376 Sum_probs=62.4
Q ss_pred CeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 13 GKLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 13 ~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
..|+|++-. +|..+.+++....+|.+||..|+..++||+++|-|+..|..+....+|.+|++. +...|+|.=|
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~-~~~~l~l~~r 75 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KWSTLFLLLR 75 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCC-TTCEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCC-CCCEEEEEEE
Confidence 457888764 789999999999999999999999999999999999877677778899999875 5678888754
No 18
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.35 E-value=0.00058 Score=59.66 Aligned_cols=71 Identities=17% Similarity=0.340 Sum_probs=59.7
Q ss_pred EEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 15 LLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
|+|++-. +|..+.+++....+|.+||..|+..++||+++|-|+..|..+....+|.+|++. +...|+|.-|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~-~g~~i~l~~~ 72 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL-GGSVLHLVLA 72 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCC-TTCEEEEEEC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCC-CCCEEEEEEe
Confidence 4566644 799999999999999999999999999999999999876667678899999876 5567888754
No 19
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.35 E-value=0.00089 Score=62.17 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=60.4
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHH---hCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESA---AGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~---t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
|+|++- -+|..+.+++....+|.+||..|+.. +|||+++|-|+..|..+....+|..|++. +...|+|..+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~-~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKID-EKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCC-SSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCC-CCCEEEEEEeC
Confidence 455554 47999999999999999999999999 79999999999876667677899999875 56788888754
No 20
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.29 E-value=0.0013 Score=62.33 Aligned_cols=76 Identities=9% Similarity=0.099 Sum_probs=63.2
Q ss_pred cCCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 11 ~~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
....|+|++-..+..+.+++....+|.+||..|+..++||+++|-|+..|..|.....|..|++. +...|+|+.|.
T Consensus 14 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~-~g~~i~l~~~~ 89 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVR-DGLTVHLVIKR 89 (106)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCC-TTEEEEEEECC
T ss_pred CCceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCC-CCCEEEEEEcC
Confidence 35568888876655678888889999999999999999999999999876566677899999875 56789998754
No 21
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.28 E-value=0.00096 Score=65.42 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=64.4
Q ss_pred CCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 12 EGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 12 ~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
...|.|++-..|..+.+++....+|.+||..|+..++||+++|-|+..|..|....+|..|++. +...|+|+.|.
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~-~gstI~lv~~~ 104 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIH-DGLTVHLVIKR 104 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCS-SSEEEEEEEC-
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCC-CCCEEEEEecc
Confidence 4568888877799999999999999999999999999999999999876667677899999975 56789998764
No 22
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.27 E-value=0.00078 Score=58.85 Aligned_cols=71 Identities=18% Similarity=0.360 Sum_probs=59.3
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
|+|++- .+|..+.+++....+|.+||..|+..++||+++|-|+..|..+....+|.+|++. +...|+|.=|
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~-~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-RESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCC-TTCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCC-CCCEEEEEEe
Confidence 456654 4799999999999999999999999999999999999876667677899999876 5567887754
No 23
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=97.27 E-value=0.00055 Score=62.65 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=60.9
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
|.|++- .+|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|.=|
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~-~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL-GGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCC-TTCEEEEECB
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCC-CCCEEEEEEE
Confidence 455554 6899999999999999999999999999999999999977777778899999875 5678888754
No 24
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=97.27 E-value=0.00071 Score=59.95 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=59.9
Q ss_pred eEEEEEe-cCCcee-Eec-CCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 14 KLLVHIS-ENGHSF-ELD-CNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 14 ~L~V~~A-htG~~l-~~d-~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.|+|++- -+|..+ .++ +....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|.-|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~-~g~~i~l~~r 76 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVR-LNDTIQLLVR 76 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCC-TTCEEEEEEC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCC-CCCEEEEEEe
Confidence 5777774 479885 888 8899999999999999999999999999876667778899999875 5667887644
No 25
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.00032 Score=66.26 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=61.6
Q ss_pred CeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 13 GKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 13 ~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
..+.|.+-.+|..+.+++....+|.+||..|+..+|||+++|-|+..|..|.....|..|++. +...|+|..+
T Consensus 27 m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~-~g~tI~lv~~ 99 (101)
T 3m63_B 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQ-DGHSVHLVKS 99 (101)
T ss_dssp --CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCC-TTEEEEECCC
T ss_pred cEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCC-CCCEEEEEeC
Confidence 345666667999999999999999999999999999999999999977677778899999875 5677888754
No 26
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.00047 Score=65.55 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=60.3
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
|+|++- -+|..+.+++....+|.+||..|+..+|||+++|-|+..|..|.....|..|++. +...|+|.-+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~-~g~~i~lv~~ 73 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLK-DGDQVVFMVS 73 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCC-TTCEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCC-CCCEEEEEEc
Confidence 456665 4899999999999999999999999999999999999877667778899999875 5678888865
No 27
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=97.23 E-value=0.00079 Score=62.66 Aligned_cols=72 Identities=19% Similarity=0.378 Sum_probs=60.7
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
|+|++- -+|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|+.|.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~-~g~~i~l~~~~ 73 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRL 73 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCC-TTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCC-CCCEEEEEEeC
Confidence 456554 4799999999999999999999999999999999999876667677899999875 56789988763
No 28
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.20 E-value=0.001 Score=60.20 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=62.8
Q ss_pred CCeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 12 EGKLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 12 ~~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
++.|+|++-. +|..+.+++....+|.+||..|+..++||+++|-|+..|-.+....+|..|++. +...|+|.-|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~-~g~~i~l~~~ 79 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQ-DSDTLILSKK 79 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCC-TTEEEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCC-CCCEEEEEEe
Confidence 3568888764 799999999999999999999999999999999999876667678899999875 5667888765
No 29
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=97.20 E-value=0.00091 Score=61.73 Aligned_cols=73 Identities=21% Similarity=0.394 Sum_probs=62.5
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEeccc
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRrl 88 (1154)
|+|++- .+|..+.+++....+|.+||..|+..++||++.|-|+..|..+....+|.+|++. +...|+|+=|..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~-~~~~i~l~~r~~ 75 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRLR 75 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCC-TTCEEEEEECCC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCC-CCCEEEEEEEcC
Confidence 456664 4899999999999999999999999999999999999977778788899999975 667899987643
No 30
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=97.19 E-value=0.00056 Score=63.39 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=60.7
Q ss_pred cCCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 11 ~~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
....|.|++-. |..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|.=|
T Consensus 16 ~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~-~gstI~lv~r 89 (93)
T 2l7r_A 16 PRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE-ALTTLEVAGR 89 (93)
T ss_dssp ----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCC-SSCEEEEECC
T ss_pred CCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCC-CCCEEEEEEe
Confidence 34467888776 99999999999999999999999999999999999876667778899999875 5567887644
No 31
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.18 E-value=0.00098 Score=60.78 Aligned_cols=72 Identities=10% Similarity=0.158 Sum_probs=60.9
Q ss_pred CeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEe
Q 001114 13 GKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (1154)
Q Consensus 13 ~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFD 85 (1154)
+.+.+....+|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|..
T Consensus 11 ~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~-~g~~l~l~~ 82 (85)
T 2kd0_A 11 STIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVG-SGAKLMLMA 82 (85)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCC-TTEEEEEEC
T ss_pred CcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCC-CCCEEEEEE
Confidence 346677788999999999999999999999999999999999999866556677899999875 456787764
No 32
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.17 E-value=0.0012 Score=58.72 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=60.3
Q ss_pred CeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 13 ~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
..|+|++- .+|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|.=|
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~-~g~~i~l~~~ 79 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIG-PNSKLNLVVK 79 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCC-SSBCCEEECC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCC-CCCEEEEEEe
Confidence 45777764 6799999999999999999999999999999999999876666677899999876 4556777643
No 33
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=97.15 E-value=0.0013 Score=59.18 Aligned_cols=74 Identities=12% Similarity=0.234 Sum_probs=61.7
Q ss_pred CCeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHH---hCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 12 EGKLLVHISE-NGHSFELDCNENSPVEAVMRFIESA---AGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 12 ~~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~---t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
++.|.|++-. +|..+.+++....+|.+||..|+.. +|||+++|-|+..|..+....+|.+|++. +...|+|..+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~-~g~~i~l~~~ 80 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRID-EKNFVVVMVT 80 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCC-TTSEEEEEEC
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCC-CCCEEEEEEc
Confidence 3567777754 6999999999999999999999998 89999999999876667678899999875 5667888764
No 34
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.15 E-value=0.00091 Score=60.94 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=61.8
Q ss_pred CCeEEEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCc-cccccccccccCCCCCceEEEE
Q 001114 12 EGKLLVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMK-LEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 12 ~~~L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGk-l~k~~~L~~Y~l~~denEIFVF 84 (1154)
-..|.|++ .-+|..+.+++....+|.+||..|+..+|||+++|-|+..|.. +....+|..|++. +...|+|.
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~-~gs~i~lv 81 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIV-PTSDIQLE 81 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCC-TTSCEEEE
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCC-CCCEEEEE
Confidence 45688888 5789999999999999999999999999999999999987666 6778899999875 55567765
No 35
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.11 E-value=0.00085 Score=63.65 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=64.3
Q ss_pred cCCeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 11 HEGKLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 11 ~~~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
.+..|+|++-. +|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|..+.
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~-~g~ti~lv~~~ 96 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIP-KDYVVQVIVSQ 96 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCS-SSCEEEEECCC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCC-CCCEEEEEEeC
Confidence 34468888865 899999999999999999999999999999999999976667678899999875 56788888654
No 36
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=97.09 E-value=0.0011 Score=67.93 Aligned_cols=76 Identities=17% Similarity=0.336 Sum_probs=64.1
Q ss_pred ccCCeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 10 VHEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 10 ~~~~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.....|+|++- .+|..+.+++....+|.+||..|+..+|||+++|-|+..|..+.....|.+|++. +...|+|.-|
T Consensus 16 ~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~-~~~~l~l~~~ 92 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 92 (172)
T ss_dssp ---CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCC-TTCEEEEEEC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCc-ccceeeeeec
Confidence 35667999997 8999999999999999999999999999999999999887777788999999875 5556777654
No 37
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=97.08 E-value=0.00081 Score=61.91 Aligned_cols=71 Identities=17% Similarity=0.308 Sum_probs=58.0
Q ss_pred CeEEEEEecCCceeEe-cCCCCCCHHHHHHHHHHHhCCCCCCEEEE---ecCCccccccccccccCCCCCceEEEE
Q 001114 13 GKLLVHISENGHSFEL-DCNENSPVEAVMRFIESAAGINFNDQLVL---CLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 13 ~~L~V~~AhtG~~l~~-d~~~f~SVe~LK~~Ia~~t~IP~~~QILL---tsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
..|.|++-++|..+.+ ++....+|.+||..|+..+|||+++|-|+ ..|..+.....|..|++. +...|.|-
T Consensus 6 ~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~-~g~~l~l~ 80 (90)
T 1v5t_A 6 SGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLK-PNTKIMMM 80 (90)
T ss_dssp CSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCC-TTEEEEEE
T ss_pred ceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCC-CCCEEEEE
Confidence 4577777789999999 99999999999999999999999999999 544445556799999875 44556653
No 38
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=97.08 E-value=0.0012 Score=60.46 Aligned_cols=72 Identities=19% Similarity=0.370 Sum_probs=60.4
Q ss_pred eEEEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 14 KLLVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 14 ~L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
-|+|++ ..+|..+.+++....+|.+||..|+..++||++.|-|+..|..+....+|.+|++. +...|+|+-|
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~-~g~~i~l~~r 81 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 81 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCC-TTCEEEEEC-
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCC-CCCEEEEEEe
Confidence 366665 57999999999999999999999999999999999999876667677899999875 5567888754
No 39
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.06 E-value=0.0011 Score=62.66 Aligned_cols=70 Identities=14% Similarity=0.330 Sum_probs=58.9
Q ss_pred eEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 14 KLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 14 ~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
-|.|++-. +|..+.+++.+-.+|.+||..|+...|||+++|.|..+|-.|....+|..|++. +...|.||
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~-~gstlhL~ 98 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIH-DGMNLELY 98 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCC-TTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCC-CCCEEEEE
Confidence 48888854 699999999999999999999999999999999999875556567899999975 44556665
No 40
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.04 E-value=0.0014 Score=60.31 Aligned_cols=73 Identities=19% Similarity=0.301 Sum_probs=59.4
Q ss_pred CeEEEEEecCCceeEecCCCC-----CCHHHHHHHHHHHhCCCCCCEEEEecCCcccc-ccccccccCCCCCceEEEEec
Q 001114 13 GKLLVHISENGHSFELDCNEN-----SPVEAVMRFIESAAGINFNDQLVLCLDMKLEP-QKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 13 ~~L~V~~AhtG~~l~~d~~~f-----~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k-~~~L~~Y~l~~denEIFVFDR 86 (1154)
..|.|++-+.|..+.+++... .+|.+||..|+..+|||+++|-|+..|..|.. ...|..|++. +...|+|..+
T Consensus 6 ~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~-~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQ-DGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCC-SSEEEEEESC
T ss_pred CeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCC-CCCEEEEEec
Confidence 358899988999999988774 99999999999999999999999986544544 4579999875 5567888653
No 41
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.02 E-value=0.0016 Score=60.49 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=62.5
Q ss_pred cCCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccc-cccccccCCCCCceEEEEecc
Q 001114 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQ-KLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 11 ~~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~-~~L~~Y~l~~denEIFVFDRr 87 (1154)
-...+.|++-..+..+.+++....+|.+||..|+..+|||+++|-|+..|..|... .+|..|++. +...|+|..|.
T Consensus 12 ~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~-~gstl~lv~r~ 88 (94)
T 2kan_A 12 AVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGIT-EFSEIVVFLKS 88 (94)
T ss_dssp SSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCC-TTEEEEEEECC
T ss_pred CCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCC-CCCEEEEEEeC
Confidence 34557787765555888999999999999999999999999999999876566666 799999975 56788888764
No 42
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.98 E-value=0.0011 Score=61.85 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=57.8
Q ss_pred CeEEEEEecCCcee-EecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEE
Q 001114 13 GKLLVHISENGHSF-ELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFI 83 (1154)
Q Consensus 13 ~~L~V~~AhtG~~l-~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFV 83 (1154)
..|.|++-+.|+.+ .+++....+|.+||..|+..+|||+++|-|+..|..+... .|..|++. +...|+|
T Consensus 6 ~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~-~g~~i~l 75 (96)
T 1wgg_A 6 SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMK-NGMTVLM 75 (96)
T ss_dssp CEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCC-SSCEEEC
T ss_pred cEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCC-CCCEEEE
Confidence 46888888999999 6999999999999999999999999999999866555555 99999875 4455655
No 43
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.97 E-value=0.0024 Score=58.07 Aligned_cols=73 Identities=11% Similarity=0.180 Sum_probs=61.4
Q ss_pred CeEEEEEe-cCC-ceeEe-cCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 13 GKLLVHIS-ENG-HSFEL-DCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 13 ~~L~V~~A-htG-~~l~~-d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
..|+|++- .+| ..+.+ ++....+|.+||..|+..++||+++|-|+..|..+....+|..|++. +...|+|.-|
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~-~g~~i~l~~~ 81 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVG-LNDIIQLLVR 81 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCC-TTCEEEEEEC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCC-CCCEEEEEEe
Confidence 45888875 478 68999 59999999999999999999999999999876566677899999875 5668888755
No 44
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.92 E-value=0.0021 Score=60.56 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=57.4
Q ss_pred EEEEEec--C---CceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccc-cccccccCCCCCceEEEEecc
Q 001114 15 LLVHISE--N---GHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQ-KLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 15 L~V~~Ah--t---G~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~-~~L~~Y~l~~denEIFVFDRr 87 (1154)
|+|++-. . |+.+.+++....+|.+||..|+..+|||+++|-|+..|..|... .+|..|++. +...|+|..|.
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~-~g~~l~l~~~~ 85 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLK-DGDMVVLLQKD 85 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCC-TTEEEEECBCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCC-CCCEEEEEECC
Confidence 6665543 2 37989999999999999999999999999999999876555445 579999875 55678888664
No 45
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.90 E-value=0.0024 Score=60.07 Aligned_cols=76 Identities=9% Similarity=0.096 Sum_probs=62.8
Q ss_pred cCCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 11 ~~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
.+..|.|++-..+..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|.-|.
T Consensus 19 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~-~gstI~l~~r~ 94 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVR-DGLTVHLVIKR 94 (100)
T ss_dssp CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCC-TTCEEEEEECC
T ss_pred CCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCC-CCCEEEEEEcC
Confidence 44568888876555678888899999999999999999999999999876566677899999875 56688888653
No 46
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.89 E-value=0.0015 Score=61.74 Aligned_cols=69 Identities=13% Similarity=0.280 Sum_probs=57.0
Q ss_pred eEEEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEe-cCCccccccccccccCCCCCceEEE
Q 001114 14 KLLVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLC-LDMKLEPQKLLSAYRLPSDDKEVFI 83 (1154)
Q Consensus 14 ~L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLt-sgGkl~k~~~L~~Y~l~~denEIFV 83 (1154)
.|.+|+ -.+|..+.+++..-.+|.+||+-|+..+|||+++|-|+. .+|++.....|+.|++.. ...|+|
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~-gstL~l 78 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPK-NNSLYV 78 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCS-EEEEEE
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCC-CCEEEE
Confidence 466555 579999999999999999999999999999999999984 577876778999998763 355555
No 47
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.86 E-value=0.0027 Score=60.58 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=62.2
Q ss_pred cCCeEEEEEec----CCceeEecCCC-CCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEe
Q 001114 11 HEGKLLVHISE----NGHSFELDCNE-NSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (1154)
Q Consensus 11 ~~~~L~V~~Ah----tG~~l~~d~~~-f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFD 85 (1154)
+++.++|++-. +|..+.+++.. ..+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|.=
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~-~g~~l~l~~ 102 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVG-AGEILTLSL 102 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCS-SSCEEEEEC
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCC-CCCEEEEEE
Confidence 45567777754 79999999997 9999999999999999999999999876666678899999875 556788774
Q ss_pred c
Q 001114 86 K 86 (1154)
Q Consensus 86 R 86 (1154)
|
T Consensus 103 r 103 (111)
T 1we6_A 103 R 103 (111)
T ss_dssp S
T ss_pred E
Confidence 4
No 48
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=96.85 E-value=0.0028 Score=60.71 Aligned_cols=73 Identities=18% Similarity=0.332 Sum_probs=63.6
Q ss_pred CeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 13 ~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
..|+|++- .+|..+.+++....+|.+||..|+..++||++.|-|+..|..|....+|..|++. +...|+|.-|
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~-~gs~I~l~~r 107 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 107 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCC-TTCEEEEEEC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCC-CCCEEEEEEe
Confidence 46888886 6899999999999999999999999999999999999977777778899999875 5667888765
No 49
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=96.80 E-value=0.0028 Score=56.27 Aligned_cols=72 Identities=4% Similarity=0.160 Sum_probs=62.2
Q ss_pred eEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 14 KLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 14 ~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.|.|++- -+|..+.+++....+|.+||..|+...|||+++|-|+..|-.+...+++..|++. +...|+|+=|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~-~~~~i~l~~~ 75 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGME-EEDVIEVYQE 75 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCC-TTEEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCC-CCCEEEEEEe
Confidence 4677775 5899999999999999999999999999999999999987778888999999976 5667887754
No 50
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.0036 Score=60.29 Aligned_cols=74 Identities=19% Similarity=0.376 Sum_probs=62.5
Q ss_pred eEEEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEeccc
Q 001114 14 KLLVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (1154)
Q Consensus 14 ~L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRrl 88 (1154)
..+|++ ..+|..+.+++....+|.+||..|+..+|||+++|-|+..|..|....+|..|++. +...|+|..|..
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~-~gstI~l~~~~~ 83 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQ-RESTLHLVLRLR 83 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCC-SSCEEEEEECCC
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCC-CCCEEEEEEEcC
Confidence 345555 57899999999999999999999999999999999999876667678899999875 567899987643
No 51
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=96.71 E-value=0.0036 Score=58.34 Aligned_cols=75 Identities=4% Similarity=0.149 Sum_probs=64.4
Q ss_pred cCCeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 11 ~~~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.+..|+|++- -+|..+.+++....+|..||..|+...|||+++|-|+..|-.|....+|..|++. +...|.|+=|
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~-~g~~I~l~~~ 93 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGME-EEDVIEVYQE 93 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCC-TTCEEEEEES
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCC-CCCEEEEEEe
Confidence 4456888885 5899999999999999999999999999999999999987778888999999976 5667887754
No 52
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=96.66 E-value=0.0066 Score=57.95 Aligned_cols=73 Identities=18% Similarity=0.345 Sum_probs=62.0
Q ss_pred CeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 13 GKLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 13 ~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
..|+|++-. +|..+.+++....+|.+||..|+..++||+++|-|+..|..+....+|..|++. +...|+|.=|
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~-~gs~I~l~~r 107 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 107 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCC-TTCEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCC-CCCEEEEEEe
Confidence 468888754 799999999999999999999999999999999999876667778899999875 5567888754
No 53
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=96.64 E-value=0.006 Score=57.32 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=60.2
Q ss_pred cCCeEEEEEecCC---ceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecC--Cc-----cccccccccccCCCCCce
Q 001114 11 HEGKLLVHISENG---HSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD--MK-----LEPQKLLSAYRLPSDDKE 80 (1154)
Q Consensus 11 ~~~~L~V~~AhtG---~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsg--Gk-----l~k~~~L~~Y~l~~denE 80 (1154)
..+.+.|++-++. ..++++.....+|.+||.-|+..+|||+++|-|+..| |+ +...++|..|++. +...
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~-~g~~ 89 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPF-DGFR 89 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCC-SCCE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCC-CCCE
Confidence 3456677776643 3688888999999999999999999999999988654 34 2567889999974 6678
Q ss_pred EEEEecc
Q 001114 81 VFIFNKL 87 (1154)
Q Consensus 81 IFVFDRr 87 (1154)
|+|.|.+
T Consensus 90 Ihlvd~~ 96 (97)
T 2kj6_A 90 LHIIDLD 96 (97)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9998854
No 54
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=96.58 E-value=0.005 Score=60.91 Aligned_cols=71 Identities=18% Similarity=0.364 Sum_probs=60.7
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
|.|++- .+|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~-~~~~l~l~~~ 72 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 72 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCC-TTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccC-CCCeeEEEee
Confidence 456663 6899999999999999999999999999999999999876667778899999876 5667888776
No 55
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0019 Score=59.47 Aligned_cols=72 Identities=8% Similarity=0.211 Sum_probs=57.9
Q ss_pred EEEEE-ecCCceeEecCC--CCCCHHHHHHHH-HHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 15 LLVHI-SENGHSFELDCN--ENSPVEAVMRFI-ESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~-AhtG~~l~~d~~--~f~SVe~LK~~I-a~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
|.|++ .-+|..+.+++. ...+|.+||+.| +...|||+++|-|+.+|..|....+|+.|++..+...|.|-=+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence 34555 458888888754 999999999999 9999999999999998877888899999997334556666543
No 56
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=95.58 E-value=0.00037 Score=61.44 Aligned_cols=71 Identities=11% Similarity=0.275 Sum_probs=57.5
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
|+|++- .+|+.+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|.+|++. +...|+|.-|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~-~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLE-QQSIVHIVQR 72 (76)
Confidence 445553 4799999999899999999999999999999999998876667677899999875 4456766543
No 57
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=96.55 E-value=0.0061 Score=61.31 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=62.7
Q ss_pred CCeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 12 EGKLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 12 ~~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
++.|.|++-. +|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|.-|
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~-~g~~l~l~~r 153 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLK-PLSTVFMNLR 153 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCC-TTCEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCC-CCCEEEEEEe
Confidence 4457777644 799999999999999999999999999999999999977777778899999875 5667877754
No 58
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=96.51 E-value=0.0056 Score=57.27 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=58.4
Q ss_pred CCeEEEEEecCC---ceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecC-Cc----c-ccccccccccCCCCCceEE
Q 001114 12 EGKLLVHISENG---HSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD-MK----L-EPQKLLSAYRLPSDDKEVF 82 (1154)
Q Consensus 12 ~~~L~V~~AhtG---~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsg-Gk----l-~k~~~L~~Y~l~~denEIF 82 (1154)
.+.+.|++-+++ ..+++++....+|.+||.-|+..+|||+++|-|+..+ |+ + ...++|..|++. +...|+
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~-~gstih 91 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANS-DGLRLH 91 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCS-SSCEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcC-CCCEEE
Confidence 455667665543 3788888899999999999999999999999998763 54 3 567899999975 677898
Q ss_pred EEe
Q 001114 83 IFN 85 (1154)
Q Consensus 83 VFD 85 (1154)
|-|
T Consensus 92 lvD 94 (95)
T 2kjr_A 92 VVD 94 (95)
T ss_dssp EEE
T ss_pred EEC
Confidence 887
No 59
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=96.49 E-value=0.0086 Score=58.27 Aligned_cols=72 Identities=19% Similarity=0.152 Sum_probs=58.2
Q ss_pred EEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCC------CCceEEEEec
Q 001114 15 LLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPS------DDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~------denEIFVFDR 86 (1154)
|+|++-....++.+++....+|.+||.-|+...|||+++|-|+.+|..|....+|..|++.. ....|++.-|
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 45555433346888999999999999999999999999999998666677788999999873 3567888776
No 60
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=96.43 E-value=0.0065 Score=58.36 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=56.1
Q ss_pred CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 22 NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 22 tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
+|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|.-|.
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~-~g~~i~lv~rl 108 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMA-SGAVIHLALKE 108 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCC-SSCEEEEEECC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCC-CCCEEEEEEEc
Confidence 688999999999999999999999999999999999976666677899999875 56678887553
No 61
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=96.41 E-value=0.0084 Score=61.67 Aligned_cols=72 Identities=18% Similarity=0.385 Sum_probs=61.4
Q ss_pred EEEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 15 LLVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 15 L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
|+|++ .-+|+.+.+++....+|.+||..|+..+|||+++|-|+..|..|....+|..|++. +...|+|.-|.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~-~gstI~Lvlrl 73 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRL 73 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCC-TTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCC-CCCEEEEEEEe
Confidence 34554 45899999999999999999999999999999999999987778888999999875 56678888653
No 62
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.39 E-value=0.0062 Score=56.53 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=58.7
Q ss_pred EEEEEecCCc--eeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecC--Cc----c-ccccccccccCCCCCceEEEEe
Q 001114 15 LLVHISENGH--SFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD--MK----L-EPQKLLSAYRLPSDDKEVFIFN 85 (1154)
Q Consensus 15 L~V~~AhtG~--~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsg--Gk----l-~k~~~L~~Y~l~~denEIFVFD 85 (1154)
+.|.+-+.+. .+++++....+|.+||.-|+..+|||+++|-|+..| |+ + ....+|..|++. +...|+|-|
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~-~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVD-DGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCC-TTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCC-CCCEEEEEE
Confidence 6777777777 688888899999999999999999999999988764 55 2 467899999975 566899887
Q ss_pred c
Q 001114 86 K 86 (1154)
Q Consensus 86 R 86 (1154)
.
T Consensus 87 ~ 87 (95)
T 1v6e_A 87 H 87 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 63
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=96.35 E-value=0.0095 Score=56.82 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=61.2
Q ss_pred CCeEEEEEecC---CceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccc-cccccccccCCCCCceEEEEe
Q 001114 12 EGKLLVHISEN---GHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLE-PQKLLSAYRLPSDDKEVFIFN 85 (1154)
Q Consensus 12 ~~~L~V~~Aht---G~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~-k~~~L~~Y~l~~denEIFVFD 85 (1154)
+-+|.|++-.- +..+.+++.+..+|.+||+-|+..+|||++.|=+.. ||+++ ...+|.+|++..+...||+|=
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~-ggkll~D~~TL~~ygI~~~G~t~hL~l 98 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVI-GQRLARDQETLHSHGVRQNGDSAYLYL 98 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEEECTTCBTGGGTCCSTTCEEEEEE
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEec-cCeEccCcCcHHHcCCCCCCCEEEEEE
Confidence 34889998663 478899999999999999999999999999999554 66665 678999999865778999883
No 64
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=96.35 E-value=0.01 Score=59.71 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=60.1
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEE-e-cCCccccccccccccCCCCCceEEEEec
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVL-C-LDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILL-t-sgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
|.|++- .+|..+.+++....+|.+||.-|+..+|||+++|-|+ . +|..+....+|.+|++. +...|+|.-+
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~-~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLG-PGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCC-TTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCC-CCCEEEEEcc
Confidence 566664 7899999999999999999999999999999999998 7 56667778999999875 5566777655
No 65
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=96.10 E-value=0.00094 Score=65.50 Aligned_cols=71 Identities=17% Similarity=0.365 Sum_probs=0.0
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
|+|++- .+|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|.+|++. +...|+|+=|
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~-~gsti~l~~r 72 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 72 (128)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccC-CCCEEEEEEE
Confidence 345553 3799999999999999999999999999999999999877778888999999875 5567777754
No 66
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.09 E-value=0.015 Score=55.25 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=56.7
Q ss_pred eEEEEEecCC----ceeEecC--------CCC-CCHHHHHHHHHHHh--CCCCCC-EEEEecCCccccccccccccCCCC
Q 001114 14 KLLVHISENG----HSFELDC--------NEN-SPVEAVMRFIESAA--GINFND-QLVLCLDMKLEPQKLLSAYRLPSD 77 (1154)
Q Consensus 14 ~L~V~~AhtG----~~l~~d~--------~~f-~SVe~LK~~Ia~~t--~IP~~~-QILLtsgGkl~k~~~L~~Y~l~~d 77 (1154)
.|+|++-+.| ..+.+++ ... .+|.+||..|+..+ +||+++ |-|+..|..|....+|..|++. +
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~-~ 90 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ-P 90 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC-T
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC-C
Confidence 4566655444 4777773 344 89999999999999 999999 9998877677777899999875 5
Q ss_pred CceEEEEecc
Q 001114 78 DKEVFIFNKL 87 (1154)
Q Consensus 78 enEIFVFDRr 87 (1154)
...|+|..|.
T Consensus 91 g~~i~lv~~~ 100 (107)
T 1x1m_A 91 GSTVHVLRKS 100 (107)
T ss_dssp TCEEEEEESS
T ss_pred CCEEEEEeCC
Confidence 5678887654
No 67
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=96.06 E-value=0.009 Score=62.67 Aligned_cols=72 Identities=18% Similarity=0.333 Sum_probs=62.5
Q ss_pred eEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 14 KLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 14 ~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.|+|++-. +|+.+.+++....+|.+||..|+..++||+++|-|+..|..|....+|..|++. +...|+|.-|
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~-~gstI~Lvlr 177 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 177 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCC-TTCEEEECCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCC-CCCEEEEEEE
Confidence 48888865 799999999999999999999999999999999999977778788999999875 5667777654
No 68
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.05 E-value=0.0075 Score=57.05 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=56.6
Q ss_pred eEEEEEec-C--CceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEE
Q 001114 14 KLLVHISE-N--GHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVF 82 (1154)
Q Consensus 14 ~L~V~~Ah-t--G~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIF 82 (1154)
.+.|+... . |..+.+++....+|.+||.-|+..+|||+++|-|+.+|-.|....+|.+|++. +..-|.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~-~gsti~ 87 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVA-HNVKAM 87 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCC-SSEEEE
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCC-CCCEEE
Confidence 47787665 2 78999999999999999999999999999999999876567677899999976 444453
No 69
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.98 E-value=0.019 Score=56.68 Aligned_cols=72 Identities=18% Similarity=0.361 Sum_probs=60.1
Q ss_pred eEEEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 14 KLLVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 14 ~L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.+.|++ ..+|..+.+++....+|.+||..|+..+|||+++|-|+..|..+....+|..|++. +...|+|+-|
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~-~~~~i~l~~r 148 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 148 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCC-TTCEEEEEEC
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCC-CCCEEEEEEe
Confidence 345554 35799999999999999999999999999999999999876667778899999875 5567888755
No 70
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=95.94 E-value=0.013 Score=55.20 Aligned_cols=73 Identities=8% Similarity=0.216 Sum_probs=57.9
Q ss_pred CCeEEEEEe-cCCceeEe--cCCCCCCHHHHHHHH-HHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 12 EGKLLVHIS-ENGHSFEL--DCNENSPVEAVMRFI-ESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 12 ~~~L~V~~A-htG~~l~~--d~~~f~SVe~LK~~I-a~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
++.|.|++- -+|..+.+ ++....+|.+||+.| +...|||+++|-|+..|..|....+|..|++..+...|.|.
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEE
Confidence 456778774 48887777 566999999999999 88899999999999988788888999999871244455544
No 71
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=95.91 E-value=0.024 Score=55.14 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=59.2
Q ss_pred eEEEEEecCCc--eeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecC--Cc----c-ccccccccccCCCCCceEEEE
Q 001114 14 KLLVHISENGH--SFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD--MK----L-EPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 14 ~L~V~~AhtG~--~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsg--Gk----l-~k~~~L~~Y~l~~denEIFVF 84 (1154)
.+.|++-+.+. .+++++....+|.+||.-|+..+|||+++|-|...| |+ + ....+|..|++. +...|+|-
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~-~g~~ihvv 84 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVR-DGYRIHAV 84 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCC-SSEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCC-CCCEEEEE
Confidence 46777777776 677888899999999999999999999999988754 44 2 467899999975 67899999
Q ss_pred ec
Q 001114 85 NK 86 (1154)
Q Consensus 85 DR 86 (1154)
|.
T Consensus 85 d~ 86 (122)
T 1t0y_A 85 DV 86 (122)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 72
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.63 E-value=0.028 Score=51.75 Aligned_cols=72 Identities=8% Similarity=0.009 Sum_probs=57.8
Q ss_pred CCeEEEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccc-cccccccCCCCCceEEEEecc
Q 001114 12 EGKLLVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQ-KLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 12 ~~~L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~-~~L~~Y~l~~denEIFVFDRr 87 (1154)
...|.|++ ..+|..+.+++....+|.+||..|+..+ +++|-|+..|..|... ..|..|++. +...|+|..+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~-~g~~i~l~~~~ 78 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNIT-NNCVIHCHRSP 78 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCC-TTEEEEEECCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCC-CCCEEEEEECC
Confidence 45688888 4689999999999999999999999988 7777777765556666 799999875 56788888653
No 73
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=95.61 E-value=0.052 Score=52.74 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=58.6
Q ss_pred EEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCC------CceEEEEec
Q 001114 15 LLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSD------DKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~d------enEIFVFDR 86 (1154)
++|-+-....++.+++....+|.+||.-|+...|||+++|-|+.+|-.|...++|..|++... +-.|++-=|
T Consensus 3 vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred eEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 556666667788889999999999999999999999999999986656777899999987631 456776655
No 74
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.59 E-value=0.029 Score=51.53 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=57.1
Q ss_pred eEEEEEec-CCc--eeEecCCCCCCHHHHHHHHHHHh--CCCCCCEEEEecCCccccccccccc--cCCCCCceEEEEec
Q 001114 14 KLLVHISE-NGH--SFELDCNENSPVEAVMRFIESAA--GINFNDQLVLCLDMKLEPQKLLSAY--RLPSDDKEVFIFNK 86 (1154)
Q Consensus 14 ~L~V~~Ah-tG~--~l~~d~~~f~SVe~LK~~Ia~~t--~IP~~~QILLtsgGkl~k~~~L~~Y--~l~~denEIFVFDR 86 (1154)
.|.|++-. +|. .+.+++....+|.+||..|+..+ +||+++|-|+..|..|.....|..| ++. +...|.|.-|
T Consensus 7 ~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~-~~~~i~lv~~ 85 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQE-KRHVLHLVCN 85 (93)
T ss_dssp CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSS-CSEEEEEECC
T ss_pred EEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCC-CCCEEEEEeC
Confidence 46666533 566 67778889999999999999999 9999999999876667678899999 754 5567777654
No 75
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=95.59 E-value=0.02 Score=58.40 Aligned_cols=71 Identities=18% Similarity=0.371 Sum_probs=59.8
Q ss_pred EEEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 15 LLVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
+.|++ ..+|..+.+++....+|.+||.-|+..+|||+++|.|+..|..+....+|..|++. +...|+|.=|
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~-~g~tl~l~~r 168 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 168 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCC-TTCEEEECC-
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCC-CCCEEEEEEe
Confidence 44443 57899999999999999999999999999999999999977777788999999875 6677777643
No 76
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=95.57 E-value=0.022 Score=52.21 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=50.8
Q ss_pred ceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEec------CCc-cccccccccccCCCCCceEEEEecc
Q 001114 24 HSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCL------DMK-LEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 24 ~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLts------gGk-l~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
..++.......+|++||.-|+..+|||+++|-|..- .|+ +...++|..|++. +...|+|-|++
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~-~g~~ihlvd~~ 84 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCR-DEFVIHVVDLQ 84 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCC-TTCEEEEEECC
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCC-CCCEEEEEeCC
Confidence 445667778999999999999999999999998752 144 4567999999974 77899988753
No 77
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=95.48 E-value=0.0024 Score=64.80 Aligned_cols=72 Identities=18% Similarity=0.379 Sum_probs=0.0
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
|+|++- .+|..+.+++....+|.+||..|+..+|||+++|-|+..|..|....+|.+|++. +...|+|.-|-
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~-~gstL~Lvlrl 73 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRL 73 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCC-CCCEEEEEeec
Confidence 345553 3799999999999999999999999999999999999877778888999999875 56678887653
No 78
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.24 E-value=0.016 Score=55.17 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=55.4
Q ss_pred CCeEEEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCC---------------CEEEEecCCccc-cccccccccC
Q 001114 12 EGKLLVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFN---------------DQLVLCLDMKLE-PQKLLSAYRL 74 (1154)
Q Consensus 12 ~~~L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~---------------~QILLtsgGkl~-k~~~L~~Y~l 74 (1154)
+..|+|++ --+|..+.+++....+|.+||..|+..++||+. +|-|...|-.|. ...+|..|++
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 34588888 689999999999999999999999999999983 445665555554 4589999997
Q ss_pred CCCCceEEEE
Q 001114 75 PSDDKEVFIF 84 (1154)
Q Consensus 75 ~~denEIFVF 84 (1154)
. +...|.+-
T Consensus 85 ~-~g~~l~lv 93 (105)
T 1v2y_A 85 R-NRDEVSFI 93 (105)
T ss_dssp C-SSEEEEEE
T ss_pred C-CCCEEEEE
Confidence 5 33444433
No 79
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=95.20 E-value=0.036 Score=62.23 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=63.4
Q ss_pred ccCCeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 10 VHEGKLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 10 ~~~~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
...+.|+|++-. +|+.+.+++....+|.+||..|+..+|||+++|-|+..|..|....+|..|++. +...|+|.-|
T Consensus 229 ~~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~-~gstL~LvlR 305 (307)
T 3ai5_A 229 GITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 305 (307)
T ss_dssp SSCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCC-TTCEEEEEC-
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCC-CCCEEEEEEe
Confidence 356678888855 799999999999999999999999999999999999876667778899999875 5567777643
No 80
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.05 E-value=0.03 Score=52.71 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=49.7
Q ss_pred cCCeEEEEE-ecCCc--eeEecCCCCCCHHHHHHHHHHHh-CCC-CCCEEEEecCCccccccccccc--cCC
Q 001114 11 HEGKLLVHI-SENGH--SFELDCNENSPVEAVMRFIESAA-GIN-FNDQLVLCLDMKLEPQKLLSAY--RLP 75 (1154)
Q Consensus 11 ~~~~L~V~~-AhtG~--~l~~d~~~f~SVe~LK~~Ia~~t-~IP-~~~QILLtsgGkl~k~~~L~~Y--~l~ 75 (1154)
.++.|.|++ ..+|. .+.+++....+|.+||+.|+..+ |+| +++|-|+..|-.|....+|..| ++.
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~ 91 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQD 91 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTC
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCC
Confidence 345577777 45676 56788889999999999999975 666 4888899877667778899999 764
No 81
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.62 E-value=0.064 Score=52.04 Aligned_cols=72 Identities=10% Similarity=0.059 Sum_probs=59.8
Q ss_pred CCeEEEE--EecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 12 EGKLLVH--ISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 12 ~~~L~V~--~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
...+.|- .+..|+.+.++...-.+|.+||..|+..++||++.|-|+.+|-.+..+++|..|+.. +...|.|-
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk-~g~TIhLv 86 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVK-PQEIVQVE 86 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCC-SSCEEEEE
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCC-CCCEEEEE
Confidence 3345555 577899999999999999999999999999999999999987777788999999975 55566554
No 82
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=94.58 E-value=0.079 Score=50.25 Aligned_cols=70 Identities=14% Similarity=0.267 Sum_probs=55.1
Q ss_pred EEEEE-ecCCceeEecCC-CCCCHHHHHHHHHHHhCCCCCCEEEEecCC-----------c----cccccccccccCCCC
Q 001114 15 LLVHI-SENGHSFELDCN-ENSPVEAVMRFIESAAGINFNDQLVLCLDM-----------K----LEPQKLLSAYRLPSD 77 (1154)
Q Consensus 15 L~V~~-AhtG~~l~~d~~-~f~SVe~LK~~Ia~~t~IP~~~QILLtsgG-----------k----l~k~~~L~~Y~l~~d 77 (1154)
|.|.+ .-+|.. .+++. .-.+|.+||+.|+..++||+++|-|...+. . +....+|..|++. +
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~-~ 85 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA-H 85 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC-T
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC-C
Confidence 77766 567865 67777 889999999999999999999999865543 3 3566889999976 5
Q ss_pred CceEEEEec
Q 001114 78 DKEVFIFNK 86 (1154)
Q Consensus 78 enEIFVFDR 86 (1154)
...|||.++
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 566887765
No 83
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=94.54 E-value=0.041 Score=62.13 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=58.0
Q ss_pred CeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEE---ecCCccccccccccccCCCCCceEEEE
Q 001114 13 GKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVL---CLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 13 ~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILL---tsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
..+.|.+-++|..+.+++....+|.+||+-|+..+|||+.+|=|+ ..|+.+.....|+.|++. +...|.|-
T Consensus 4 ~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik-~g~~l~L~ 77 (320)
T 3shq_A 4 KEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELK-PNFKLMMV 77 (320)
T ss_dssp CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC---CEEEEE
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCC-CCCEEEEE
Confidence 346778889999999999999999999999999999999999999 455566667889999875 44556554
No 84
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=94.02 E-value=0.07 Score=52.37 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=60.0
Q ss_pred ccCCeEEEEE-ecCCceeEecCCCCCCHHHHHHHHHHH------hCCC--CCCEEEEecCCccccccccccccCCCCC-c
Q 001114 10 VHEGKLLVHI-SENGHSFELDCNENSPVEAVMRFIESA------AGIN--FNDQLVLCLDMKLEPQKLLSAYRLPSDD-K 79 (1154)
Q Consensus 10 ~~~~~L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~------t~IP--~~~QILLtsgGkl~k~~~L~~Y~l~~de-n 79 (1154)
+.+..|.|.+ .-+|.++.+++.+..+|.+||+.|+.. .+|| +++|-|+.+|-.|....+|..|++...+ .
T Consensus 13 ~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~ 92 (125)
T 2gow_A 13 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT 92 (125)
T ss_dssp CCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEE
T ss_pred CCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence 3455677777 468999999999999999999999994 4774 7788888877777788999999986332 2
Q ss_pred eEEEEecc
Q 001114 80 EVFIFNKL 87 (1154)
Q Consensus 80 EIFVFDRr 87 (1154)
.|.|.=|.
T Consensus 93 tlhlv~r~ 100 (125)
T 2gow_A 93 VMHLVARE 100 (125)
T ss_dssp EEEEEECS
T ss_pred EEEEEecC
Confidence 45555443
No 85
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=93.96 E-value=0.078 Score=48.11 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=50.5
Q ss_pred ecCCceeEec-CCCCCCHHHHHHHHHHHhCCCCCCEEEEecC-Cccc----cccccccccCCCCCceEEEEec
Q 001114 20 SENGHSFELD-CNENSPVEAVMRFIESAAGINFNDQLVLCLD-MKLE----PQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 20 AhtG~~l~~d-~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsg-Gkl~----k~~~L~~Y~l~~denEIFVFDR 86 (1154)
..+|..+ ++ +..-.+|.+||.+|+..+|||++.|-|+.++ ++.+ ...+|..|++. ....|||-++
T Consensus 7 ~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~-~g~~l~v~~~ 77 (86)
T 2kzr_A 7 AKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQ-SGDMLIVEED 77 (86)
T ss_dssp ETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCC-TTCEEECCCC
T ss_pred cCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCC-CCCEEEEEeC
Confidence 5678654 55 7788999999999999999999999988763 5554 46789999876 3446777654
No 86
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.91 E-value=0.22 Score=48.27 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=54.8
Q ss_pred cCCeEEEEE-ecCCceeEecCCCCCCHHHHHHHHHHHh------CC--CCCCEEEEecCCccccccccccccCC
Q 001114 11 HEGKLLVHI-SENGHSFELDCNENSPVEAVMRFIESAA------GI--NFNDQLVLCLDMKLEPQKLLSAYRLP 75 (1154)
Q Consensus 11 ~~~~L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t------~I--P~~~QILLtsgGkl~k~~~L~~Y~l~ 75 (1154)
....|.|++ ..+|.++.+++....+|.+||+.|+..| +| |+++|-|+..|-.|....+|..|++.
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~ 86 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLP 86 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCC
Confidence 334588877 4699999999999999999999999955 65 68888899987778888999999875
No 87
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=93.57 E-value=0.32 Score=55.90 Aligned_cols=76 Identities=13% Similarity=0.261 Sum_probs=60.6
Q ss_pred CeEEEEEec-CCceeEecCCCCCCHHHHHHHHHH---HhCCCCCCEEEEecCCccccccccccccCCCCCceE-EEEecc
Q 001114 13 GKLLVHISE-NGHSFELDCNENSPVEAVMRFIES---AAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEV-FIFNKL 87 (1154)
Q Consensus 13 ~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~---~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEI-FVFDRr 87 (1154)
..|.|++-. +|..+.+++....+|.+||..|+. .+|||+++|-|+..|..|....+|..|++. +...| ++..|.
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~-~gstIv~lv~k~ 84 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRID-EKNFVVVMVTKT 84 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCC-TTSCEEEEEECC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCC-CCCEEEEEEecC
Confidence 356676644 699999999999999999999999 567999999999876667778899999976 34445 666665
Q ss_pred cc
Q 001114 88 RL 89 (1154)
Q Consensus 88 ll 89 (1154)
.-
T Consensus 85 ~~ 86 (368)
T 1oqy_A 85 KA 86 (368)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 88
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=92.16 E-value=0.61 Score=44.42 Aligned_cols=75 Identities=9% Similarity=0.224 Sum_probs=64.1
Q ss_pred cCCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 11 ~~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.+..+.|.+..+|..+.|.+...+.+..|+..++...||+++.+-++..|.++...++...|++- +...|-||-+
T Consensus 28 ~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~me-dgD~Idv~~~ 102 (106)
T 2eke_C 28 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDME-DNDIIEAHRE 102 (106)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCC-TTEEEEEEEC
T ss_pred CCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCC-CCCEEEEEee
Confidence 44578888866999999999999999999999999999999988888877788888999999865 5667888754
No 89
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=92.12 E-value=0.46 Score=44.14 Aligned_cols=76 Identities=8% Similarity=0.252 Sum_probs=64.8
Q ss_pred CCeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEeccc
Q 001114 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (1154)
Q Consensus 12 ~~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRrl 88 (1154)
+..++|.+- .+|..+.+++...+.+..|+..++...|||++++-++..|.++.+.++...|++- +...|-||-+..
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~me-dgD~Idv~~~~~ 81 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEME-DEDTIDVFQQQT 81 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCC-TTCEEEEEECCE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCC-CCCEEEEEEecc
Confidence 356888886 5899999999999999999999999999999998898888888888999999875 667788886543
No 90
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.03 E-value=0.58 Score=45.96 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=51.7
Q ss_pred eEEEEE-ecCCcee-EecCCCCCCHHHHHHHHHHHh-----CCCC--CCEEEEecCCccccccccccccCCCC
Q 001114 14 KLLVHI-SENGHSF-ELDCNENSPVEAVMRFIESAA-----GINF--NDQLVLCLDMKLEPQKLLSAYRLPSD 77 (1154)
Q Consensus 14 ~L~V~~-AhtG~~l-~~d~~~f~SVe~LK~~Ia~~t-----~IP~--~~QILLtsgGkl~k~~~L~~Y~l~~d 77 (1154)
.|.|.+ .-+|..+ .++..+..+|.+||+-|+..| +||+ ++|-|+.+|-.|....+|..|++...
T Consensus 16 ~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~ 88 (126)
T 1se9_A 16 QLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVS 88 (126)
T ss_dssp CEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTT
T ss_pred cEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcC
Confidence 445544 8899888 688889999999999998776 5887 67778887777788899999998743
No 91
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.93 E-value=0.37 Score=44.14 Aligned_cols=68 Identities=9% Similarity=0.053 Sum_probs=50.6
Q ss_pred EEEEE-ecCCcee--Ee-cCCCCCCHHHHHHHHHHH-hCCCCCCEEEEec-CCccc-cccccccccCCCCCceEEE
Q 001114 15 LLVHI-SENGHSF--EL-DCNENSPVEAVMRFIESA-AGINFNDQLVLCL-DMKLE-PQKLLSAYRLPSDDKEVFI 83 (1154)
Q Consensus 15 L~V~~-AhtG~~l--~~-d~~~f~SVe~LK~~Ia~~-t~IP~~~QILLts-gGkl~-k~~~L~~Y~l~~denEIFV 83 (1154)
|.|++ .-+|..+ .+ ++.+-.+|.+||..|+.. .+||+++|-|... .|+.+ ...+|..|++. +...|||
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~-~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVG-TTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCC-SEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCC-CCCEEEE
Confidence 66665 3455554 46 777889999999999995 8999999998754 66655 66799999875 4445554
No 92
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.80 E-value=0.36 Score=44.67 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=52.4
Q ss_pred cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecC---C--c--c-ccccccccccCCCCCceEEEEec
Q 001114 21 ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD---M--K--L-EPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 21 htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsg---G--k--l-~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.+|+.++.......+|.+||.-|++.||||+..|-|...+ + . + ...+.|.+|++. +...|+|=|.
T Consensus 20 ~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~-~G~~I~V~d~ 92 (97)
T 1wjn_A 20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVE-NGDCLLVRWS 92 (97)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCC-TTCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCC-CCCEEEEEec
Confidence 5788988888889999999999999999999999987542 1 1 2 345789999875 6678888764
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=91.75 E-value=0.58 Score=41.02 Aligned_cols=69 Identities=9% Similarity=0.267 Sum_probs=58.0
Q ss_pred EEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 15 L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
+.|.+. -+|..+.+.+...+.+..|+...+...|||++++-++..|.++.+.++...|+.- +...|-||
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~me-dgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEME-DEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCC-TTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCC-CCCEEEEE
Confidence 445553 5899999999999999999999999999999999899888888888999999865 55566665
No 94
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=91.64 E-value=0.61 Score=43.12 Aligned_cols=74 Identities=8% Similarity=0.255 Sum_probs=63.5
Q ss_pred CeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 13 ~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
..+.|.+. -+|..+.|.+...+.+..|+...+...|||++++-++..|.++.+.++...|+.- +...|-||-+.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~me-dgD~Idv~~~q 78 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEME-DEDTIDVFQQQ 78 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCC-TTEEEEEEECC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCC-CCCEEEEEEec
Confidence 46777775 5899999999999999999999999999999999899888888888999999865 66778888543
No 95
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=91.44 E-value=0.036 Score=58.10 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred EEEEE-ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 15 LLVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 15 L~V~~-AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
|+|++ .-+|.++.+++.+..+|.+||..|+...|||+++|-|+..|-.|....+|. ++..|+|.=|
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs------~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT------DDVTYYLSLK 67 (189)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc------CCCEEEEEEe
Confidence 45555 357999999999999999999999999999999999998776676667774 3445666543
No 96
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=90.74 E-value=0.77 Score=41.10 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=60.6
Q ss_pred CCeEEEEEec-CCc-eeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 12 EGKLLVHISE-NGH-SFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 12 ~~~L~V~~Ah-tG~-~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
+..+.|.+.. +|. .+.+.+...+.+..|+...+...|||++++-++..|.++...++...|++- +...|-||
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~me-dgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLE-SGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCC-TTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCC-CCCEEEEe
Confidence 4567787754 885 899999999999999999999999999988888877788888999999865 55667665
No 97
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=90.00 E-value=0.81 Score=43.86 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=62.7
Q ss_pred CeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 13 ~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
..+.|.+. -+|..+.|.+...+.+..|+..++...|||+.++-++..|-++...++...|.+- +...|-||-+
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mE-DgD~Idv~~~ 98 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGME-DDDVIDAMVE 98 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCS-SEEEEEEECC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCC-CCCEEEEEEc
Confidence 45888886 4899999999999999999999999999999988888878888888999999865 5667877754
No 98
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=88.61 E-value=1.6 Score=40.41 Aligned_cols=75 Identities=8% Similarity=0.268 Sum_probs=63.1
Q ss_pred cCCeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 11 ~~~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
.+..+.|.+. .+|..+.|.+...+.+..|+..++...|||++.+-++..|-++.+.++...|++- +...|-||-+
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~me-dgD~Idv~~~ 89 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEME-DEDTIDVFQQ 89 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCC-TTEEEEEEEC
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCC-CCCEEEEEee
Confidence 3457888885 4899999999999999999999999999999988888878788888999999865 5667777754
No 99
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.97 E-value=1.5 Score=41.56 Aligned_cols=75 Identities=8% Similarity=0.256 Sum_probs=63.9
Q ss_pred CCeEEEEEe-cCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 12 ~~~L~V~~A-htG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
+..+.|.+. .+|..+.|.+...+.+..|+..++...|||++.+-++..|-++...++...|.+- +...|.||-+.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~me-dgD~Idv~~~q 97 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEME-DEDTIDVFQQQ 97 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCC-TTEEEEECCCC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCC-CCCEEEEEEec
Confidence 357888875 4899999999999999999999999999999988888878888888999999865 66778887543
No 100
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=83.99 E-value=2.5 Score=37.53 Aligned_cols=48 Identities=23% Similarity=0.255 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
-|-+||..|..|+.+|.+-+..|..+..++.....|+..++..||..|
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 388899999888887777777777777777766666666666666543
No 101
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=83.92 E-value=2.4 Score=48.09 Aligned_cols=75 Identities=11% Similarity=0.182 Sum_probs=62.7
Q ss_pred eEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCC--ccccccccccccCCCCCceEEEEeccc
Q 001114 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDM--KLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (1154)
Q Consensus 14 ~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgG--kl~k~~~L~~Y~l~~denEIFVFDRrl 88 (1154)
..++++..+-....+-.....++..|++.|+..++|++.+|.+|..++ .+.+......|...+.++|+++|++..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (396)
T 4eut_A 312 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSREG 388 (396)
T ss_dssp EEEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEECC-
T ss_pred EEEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEecCC
Confidence 457888888888888778899999999999999999999999998764 346667777888777889999998753
No 102
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=77.81 E-value=1.9 Score=37.81 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLD 867 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~ 867 (1154)
..+++++..|..|+..+.+||..|..--+||..|+++|++.+.-+.
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678899999999999999999999999999999999998887765
No 103
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=76.06 E-value=9.4 Score=36.84 Aligned_cols=74 Identities=4% Similarity=0.138 Sum_probs=61.7
Q ss_pred CCeEEEEEec-CCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 12 EGKLLVHISE-NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 12 ~~~L~V~~Ah-tG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
+..+.|.+.. +|..+.|.+...+.+..|+...+...|||+..+-++..|.++...++...+..- +...|-||=.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~ME-DgD~IdV~~~ 112 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGME-EEDVIEVYQE 112 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCC-TTCEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCC-CCCEEEEEee
Confidence 4577777765 688899999999999999999999999999999999877788888888888765 5567877754
No 104
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=75.15 E-value=13 Score=33.53 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhcCcccccCcccccccchhhhhHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001114 586 KLKAELASAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYEKRIQELEQRL 665 (1154)
Q Consensus 586 ~l~~el~~~ia~~~~~~~~~~~~s~~~~~~~~~~~~a~~~t~~~l~~kde~~~~lq~~~~~~~~~~~~~e~RIr~LE~lL 665 (1154)
+-+..|...+..+...-|.....-+ ....+|..|. +|+++||.+...++..+..++.++..|++.|
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~---sK~~iL~~Ai-----------~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKA---SRAQILDKAT-----------EYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCC---CHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC---CHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788889999999887653221 2345555554 4999999999999999999999999999888
Q ss_pred H
Q 001114 666 S 666 (1154)
Q Consensus 666 ~ 666 (1154)
.
T Consensus 78 ~ 78 (83)
T 1nkp_B 78 R 78 (83)
T ss_dssp H
T ss_pred H
Confidence 4
No 105
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=74.83 E-value=7.1 Score=41.15 Aligned_cols=77 Identities=9% Similarity=0.187 Sum_probs=64.4
Q ss_pred CCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecccc
Q 001114 12 EGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLRL 89 (1154)
Q Consensus 12 ~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRrll 89 (1154)
+.++.|.+..+|..+.|.+...+.+..|+...+...|||..++-++..|.++...++...++.- +.-.|-||=...-
T Consensus 27 ~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~ME-dgD~Idv~~~q~g 103 (200)
T 3pge_A 27 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDME-DNDIIEAHREQIG 103 (200)
T ss_dssp CCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCC-TTEEEEEEECCSC
T ss_pred CCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCC-CCCEEEEEeccCc
Confidence 4456666678999999999999999999999999999999999999988888888888888765 5566777765443
No 106
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=73.40 E-value=19 Score=32.67 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001114 836 DQLSETQTKLKAVMEEVVMLGRELEMRQKLLDES 869 (1154)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~ 869 (1154)
.-++.+|.|+..+++.|+-|+-|++.++.+-..+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999888765543
No 107
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.98 E-value=18 Score=32.47 Aligned_cols=72 Identities=25% Similarity=0.239 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhH
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRA 898 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~ 898 (1154)
.+..|+...+.-...+.+++.+++...+....+-.|+..+++++-..+.+--.+|..|. .|+.++-.++..+
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~----~a~~kLeeaek~~ 78 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK----DAQEKLELADKKA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 34555555666666666666666666666666666666666666666666444555555 6666666666554
No 108
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=70.60 E-value=6.9 Score=29.99 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
.+++|+|.+.++.+...|..|.+.++++|-+|.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 467888999999999999999999999998773
No 109
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=70.51 E-value=21 Score=38.67 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHh
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTH 890 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~ 890 (1154)
+.+++..|+..++.-...+..++.++..+|+++..++.+++.....+++.+..-.+...-+.++..+.+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKET 158 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998888888888666666666555444433
No 110
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=70.30 E-value=7.3 Score=40.94 Aligned_cols=75 Identities=9% Similarity=0.219 Sum_probs=64.1
Q ss_pred CCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEecc
Q 001114 12 EGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (1154)
Q Consensus 12 ~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDRr 87 (1154)
+..+.|.+..+|..+.|.+...+.+..|+...+...|||+..+-++..|.++...++...+.+- +...|-||=..
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdME-DGDtIDV~leQ 129 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDME-DNDIIEAHREQ 129 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCC-TTEEEEECCCC
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCC-CCCEEEEEEec
Confidence 3467777788999999999999999999999999999999888888877788888888888764 56778888544
No 111
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=70.12 E-value=1.1e+02 Score=32.90 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=35.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHH
Q 001114 826 KLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEA 883 (1154)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~ 883 (1154)
.+...++.-...+.++-..|..+.++++.++..++..+..+++.+.....+|+-+.++
T Consensus 15 ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~ 72 (256)
T 3na7_A 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555556666666666666666666666666666666666666666633
No 112
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=69.67 E-value=87 Score=30.65 Aligned_cols=39 Identities=33% Similarity=0.327 Sum_probs=32.0
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHhhhhhhhccccccccccc
Q 001114 989 HEQLKKELE---EKKELVKTLYTKHQLEKQANKEKISFSRLE 1027 (1154)
Q Consensus 989 ~~~~~ke~~---~k~~~~~~l~~k~~~~~~~~~~~i~~~~f~ 1027 (1154)
-+.|+||+| .|.+++-.-|.|++.|-.+-|+||++.|-+
T Consensus 121 iG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~Q 162 (167)
T 4gkw_A 121 IGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQ 162 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 355677775 577888889999999999999999988743
No 113
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.63 E-value=6.5 Score=34.94 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 825 LKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQK 864 (1154)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~ 864 (1154)
......|.+|+..|.+++..|..-.++|..|++||++.++
T Consensus 29 ~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 29 QEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344456789999999999999999999999999998765
No 114
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.39 E-value=25 Score=32.22 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=55.2
Q ss_pred EEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEec---CCccccccccccccCCCCCceEEEEeccc
Q 001114 17 VHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCL---DMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (1154)
Q Consensus 17 V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLts---gGkl~k~~~L~~Y~l~~denEIFVFDRrl 88 (1154)
|+|-.--+...+-+++...+.+|.-.|..++...++..+||-. +..|+-...|+.|++- |+|++|.+.
T Consensus 14 vVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgir----ELya~d~~~ 84 (91)
T 2daj_A 14 VINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLR----ELYAMDVNR 84 (91)
T ss_dssp EEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCS----EEEEEECCC
T ss_pred EEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhh----hhheecccc
Confidence 3344444555567889999999999999999999999999954 5677888999999865 999999765
No 115
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=64.08 E-value=94 Score=34.07 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhhhhhhhhhhcHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 954 TAEFRKCIRVLADRVAFLSRHREELLDK-NRKVELAHEQLKKELEEKKELVKTLYTKH 1010 (1154)
Q Consensus 954 ~~~f~~~i~~l~d~v~fl~~~~~~~~~r-~~~~e~~~~~~~ke~~~k~~~~~~l~~k~ 1010 (1154)
..+.++.+.-++..| .+|.+++-.+ ++-+|.|++++....|+=++-+-..++-+
T Consensus 200 ~e~l~~~l~~~~~~~---~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l~~~~~~~ 254 (273)
T 3s84_A 200 TEGLQKSLAELGGHL---DQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAGDV 254 (273)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred HHHHHHhHHHHHHHH---HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhCcchhhH
Confidence 345555555555443 2333344332 45678888888777766666555555544
No 116
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=63.65 E-value=7.7 Score=29.29 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 839 SETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 839 ~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
+++|+|.+.++.|-+.|..|.+.++++|.+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 578899999999999999999999999864
No 117
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=62.60 E-value=13 Score=28.47 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
.+++|+|.+.++.+-+.|..|.+.++++|-+|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 456788888899998889999999999988763
No 118
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=61.73 E-value=37 Score=31.07 Aligned_cols=68 Identities=22% Similarity=0.208 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhcCcccccCcccccccchhhhhHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001114 586 KLKAELASAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYEKRIQELEQRL 665 (1154)
Q Consensus 586 ~l~~el~~~ia~~~~~~~~~~~~s~~~~~~~~~~~~a~~~t~~~l~~kde~~~~lq~~~~~~~~~~~~~e~RIr~LE~lL 665 (1154)
+-+..|...+..+...-|....+.=.+ ...+|..|. +|++.|+.+...++.....++.+.+.|..+|
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~s--K~~iL~~A~-----------~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAP--KVVILKKAT-----------AYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCC--HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999988877664432222 455666654 4999999999888888888888888888777
Q ss_pred H
Q 001114 666 S 666 (1154)
Q Consensus 666 ~ 666 (1154)
.
T Consensus 83 ~ 83 (88)
T 1nkp_A 83 E 83 (88)
T ss_dssp H
T ss_pred H
Confidence 5
No 119
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.25 E-value=24 Score=34.96 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=21.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001114 827 LQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQM 871 (1154)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~ 871 (1154)
+-..+-....+..+++..+....+|+..|+.||...+.++++...
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~ 110 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK 110 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555555555544444444333
No 120
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.68 E-value=1.8e+02 Score=34.67 Aligned_cols=34 Identities=9% Similarity=-0.040 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 170 QERAVEVGRGNLEQYYRVINQNYNDFMKRYSQQQ 203 (1154)
Q Consensus 170 q~raL~aAvaNLe~~~~~lek~f~ef~~~~~qll 203 (1154)
|.+-+.-.+..|..-+.++++++.+...|++.+.
T Consensus 58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~ 91 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIM 91 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 3334444444555555555666666666655443
No 121
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=58.48 E-value=29 Score=45.60 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLE 877 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~e 877 (1154)
..++.+|+..|.+..+.+..++..+..+.+++..|+.+++.++..|.+.+..++.+|
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e 912 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555554444444444433333
No 122
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=58.38 E-value=71 Score=30.29 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=53.8
Q ss_pred eEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEE--ec-CCccc-cccccccccCCCCCceEEEEecccc
Q 001114 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVL--CL-DMKLE-PQKLLSAYRLPSDDKEVFIFNKLRL 89 (1154)
Q Consensus 14 ~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILL--ts-gGkl~-k~~~L~~Y~l~~denEIFVFDRrll 89 (1154)
-.+||+++.. -+++-...+.++.+++..++.+.+...++++|. .+ |.|.+ +.+-+.-...-+-...+||+.|..+
T Consensus 11 ~~~Vy~~Dhs-y~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd~~ 89 (104)
T 1wgy_A 11 FCHVYITEHS-YVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKDLA 89 (104)
T ss_dssp CEEEECSSSC-EEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECCSS
T ss_pred EEEEEeccCc-eEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehHhc
Confidence 4889998544 455666778999999999999999988788875 44 55543 3333312211122479999999888
Q ss_pred CCC
Q 001114 90 QSN 92 (1154)
Q Consensus 90 ~~~ 92 (1154)
+.-
T Consensus 90 d~L 92 (104)
T 1wgy_A 90 DTL 92 (104)
T ss_dssp SCC
T ss_pred ccc
Confidence 553
No 123
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=58.05 E-value=43 Score=30.12 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhhcCcccccCcccccccchhhhhHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001114 586 KLKAELASAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYEKRIQELEQRL 665 (1154)
Q Consensus 586 ~l~~el~~~ia~~~~~~~~~~~~s~~~~~~~~~~~~a~~~t~~~l~~kde~~~~lq~~~~~~~~~~~~~e~RIr~LE~lL 665 (1154)
+-+..|...+..+...-|.....+-. ....+|..|. +|+++|+..-..++.....+..+++.|...|
T Consensus 11 ~RR~~lk~~f~~Lr~~vP~~~~~~k~--sk~~iL~kA~-----------~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 11 NRRAHLRLSLEKLKGLVPLGPDSSRH--TTLSLLTKAK-----------LHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSSSCCC--TTHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888887765332221 2445666664 4999999999999999999999999998887
Q ss_pred H
Q 001114 666 S 666 (1154)
Q Consensus 666 ~ 666 (1154)
.
T Consensus 78 ~ 78 (80)
T 1nlw_A 78 E 78 (80)
T ss_dssp H
T ss_pred h
Confidence 5
No 124
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=57.50 E-value=33 Score=32.02 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=58.5
Q ss_pred ccCCeEEEEEec-CC-ceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 10 VHEGKLLVHISE-NG-HSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 10 ~~~~~L~V~~Ah-tG-~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
..+..+.|-+.. +| ..+.|.+...+.+..|...-+...|+++...-++.-|.++.+.++...+..- +...|-||
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdME-DgD~IDv~ 96 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGME-SGDLIEVW 96 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCC-TTEEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCC-CCCEEEEe
Confidence 355667777754 66 4788899999999999999999999999987788877788888888788764 55667665
No 125
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=55.65 E-value=17 Score=27.46 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
.+++|+|++.++.+.+.|..|++.++++|-|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 3578889999999999999999999988754
No 126
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=55.37 E-value=21 Score=27.18 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
.+++++|++.++.+-.-|..|+..++++|-|
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 5678889999999999999999999998864
No 127
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=54.53 E-value=26 Score=36.38 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhH
Q 001114 819 VSSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRA 898 (1154)
Q Consensus 819 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~ 898 (1154)
..+.+|..|+......+++|...+..++++.++++.|+......+..+. .++|.++...
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~--------------~~~e~i~i~~------- 75 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS--------------QQAENSEVIK------- 75 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH--------------HHHHhhhHHH-------
Confidence 3567889998887777777776666666666666666555533332221 2222222211
Q ss_pred HHHHHHHHhhhhhhhhhhhhcc----ccccCC-c-------ccchhhhHHH-HH-----HhhcccCCCCCCcChHHHHHH
Q 001114 899 SEYSALRASAVKLRGLFERLRS----CVFASE-G-------AGGFADSLRT-LA-----QSLANSISDNEDDGTAEFRKC 960 (1154)
Q Consensus 899 ~~~~~l~~~~~r~~gl~~~~~~----~~~~p~-~-------~~~~~~~l~~-~~-----~~l~~~~~~~~~~~~~~f~~~ 960 (1154)
.=|.-| .|+|||+..+.-.. |+-+.. | .+.|-=.+.. -+ .+.|- . +..+..+++..
T Consensus 76 DL~e~L--TGl~V~~~~ed~~~~~FDc~Qtg~nG~~~~~~~tl~ykL~i~k~~~~~~e~~Y~P~-l---~~r~~ee~r~L 149 (190)
T 4emc_A 76 DLYEYL--CNVRVHKSYEDDSGLWFDISQGTHSGGSSDDYSIMDYKLGFVKGQAQVTEVIYAPV-L---KQRSTEELYSL 149 (190)
T ss_dssp HHHHHH--HSEECCCCCCCSSCEEEEEEESCCC-----CCCCCCEEEEEC-----CCEEEEEEC-C---SSSCHHHHHHH
T ss_pred HHHHHc--cCcEEEEEEEcCCCeEEEEEecCCCCCcCCcceEEEEEEeeccCCCCCceEEEecc-c---cccchHHHHHH
Confidence 123334 68999999766444 885544 7 4322211110 00 01111 1 22344678899
Q ss_pred HHHhh----hhhhhhhhcHHHHHHHhHHH
Q 001114 961 IRVLA----DRVAFLSRHREELLDKNRKV 985 (1154)
Q Consensus 961 i~~l~----d~v~fl~~~~~~~~~r~~~~ 985 (1154)
+++|= |.++|=-.+ +.+=|.+|
T Consensus 150 ~~~LPdYL~d~ltFP~~~---l~qFY~Kv 175 (190)
T 4emc_A 150 QSKLPEYLFETLSFPLSS---LNQFYNKI 175 (190)
T ss_dssp HHHSCGGGGSCEEEETTH---HHHHHHHH
T ss_pred HHhCcHHhhceeeecHHH---HHHHHHHH
Confidence 99987 666665433 55556665
No 128
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=54.26 E-value=19 Score=27.26 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
.+++|+|++.++.+-..|..|.+.++++|-+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 4678889999999999999999999998854
No 129
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=54.13 E-value=49 Score=29.61 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHH
Q 001114 825 LKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEARE 885 (1154)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~ 885 (1154)
.+.+..+++-...+.+.+.+...+.+||..|++-+-.+...||..++........|++|+.
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666666666666666666666666665555556665543
No 130
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=53.00 E-value=73 Score=31.89 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEY 901 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~ 901 (1154)
..+..|...|.+-.....+.+.|...+...+..+..+|+..-..++....-|..||+=|+ .+-.++++..--...|
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~----~~~~nlKsLE~~eeka 127 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK----TVTNNLKSLEDKVEEL 127 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHhHHHH
Confidence 344555555555555555556666666666888888888888888888888888888888 6667777666555555
Q ss_pred HHHHHhh-hhhhhhhhhh
Q 001114 902 SALRASA-VKLRGLFERL 918 (1154)
Q Consensus 902 ~~l~~~~-~r~~gl~~~~ 918 (1154)
+.-+..- -+||.|-.||
T Consensus 128 s~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 128 LSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5433222 5666665554
No 131
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=51.60 E-value=1.2e+02 Score=28.30 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 836 DQLSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
.++.+.+.+...+.+||+.|++-+..+...||.
T Consensus 30 ~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 30 ADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555444444443
No 132
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=51.47 E-value=23 Score=26.76 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
.+++|+|++.++.+=..|..|++.++++|-+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 3578899999999999999999999998854
No 133
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=51.37 E-value=1.2e+02 Score=35.99 Aligned_cols=33 Identities=9% Similarity=0.039 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 001114 384 VFVHNYMQKITYVSYVIKDAKLQFPVFREAMVR 416 (1154)
Q Consensus 384 ~~~~~~Lr~IS~IQs~I~evk~~L~~L~e~L~r 416 (1154)
..+-..+.+|..+|..|.++..+|..|.-++..
T Consensus 124 ekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 124 RKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777777777777777666555443
No 134
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=51.04 E-value=2.8e+02 Score=30.32 Aligned_cols=13 Identities=8% Similarity=0.394 Sum_probs=6.0
Q ss_pred HHHHhHHHHHhhh
Q 001114 313 SLSKDVSTVKKLV 325 (1154)
Q Consensus 313 sL~kD~e~V~kL~ 325 (1154)
++.+.++.+....
T Consensus 129 k~~~~leeLr~~l 141 (273)
T 3s84_A 129 KIDQTVEELRRSL 141 (273)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4444444554443
No 135
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=51.03 E-value=31 Score=27.49 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRE 858 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e 858 (1154)
-+.+|+.+..+.....+|+|++++.+..|=.+||.=
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 367788888888888888888888888887777753
No 136
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=50.98 E-value=52 Score=29.32 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=28.2
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDV 274 (1154)
Q Consensus 241 Vd~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~I 274 (1154)
|+.+.|+..+..+......+...+..|...+..|
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999998888888888887777766655
No 137
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=50.97 E-value=20 Score=31.98 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=42.6
Q ss_pred ecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecC---Cccc--cccccccccCCCCCceEEE
Q 001114 20 SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD---MKLE--PQKLLSAYRLPSDDKEVFI 83 (1154)
Q Consensus 20 AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsg---Gkl~--k~~~L~~Y~l~~denEIFV 83 (1154)
.-+| +..+++....++.+|+..|+..++||++.+-+..+. +.+. +...|..+++.+ -.-|||
T Consensus 11 s~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~h-Gd~l~l 77 (80)
T 2pjh_A 11 SPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKH-GDLLFL 77 (80)
T ss_dssp CSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCT-TCCEEC
T ss_pred CCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCC-CCEEEE
Confidence 3445 556677788899999999999999999888777663 2232 455666666543 234444
No 138
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=50.63 E-value=22 Score=27.08 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
.+++|+|.+.++.+-+.|..|+..++++|.+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 4578889999999999999999999998864
No 139
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=50.49 E-value=38 Score=30.46 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhcCcccccCcccccccchhhhhHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001114 587 LKAELASAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYEKRIQELE 662 (1154)
Q Consensus 587 l~~el~~~ia~~~~~~~~~~~~s~~~~~~~~~~~~a~~~t~~~l~~kde~~~~lq~~~~~~~~~~~~~e~RIr~LE 662 (1154)
-+..|...+..+...-|.. ++-- ....+|..|. +|+++||.+...++.....++.+|++..
T Consensus 17 RR~~in~~f~~L~~lvP~~--~~k~--~Ka~IL~~Ai-----------~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 17 YRSSINDKIIELKDLVVGT--EAKL--NKSAVLRKAI-----------DYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHTCS--SCCC--CHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC--CCCC--CHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4456777788888777752 1111 2455666654 4999999988888777777766666543
No 140
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=50.41 E-value=65 Score=30.37 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=50.7
Q ss_pred CCCcccccccCCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCC-ccc----cccccccccCC
Q 001114 2 SCSITEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDM-KLE----PQKLLSAYRLP 75 (1154)
Q Consensus 2 ~~~~~~~~~~~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgG-kl~----k~~~L~~Y~l~ 75 (1154)
|||.+....-+....-+.--+|.++.-......+|.+++.||....+.+....-|+++.- +.. ..++|...++.
T Consensus 2 ~~~~p~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ 80 (109)
T 2dzk_A 2 SSGSSGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELA 80 (109)
T ss_dssp CSCCCCCCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCS
T ss_pred CCCCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCC
Confidence 566655544334344445568998888878889999999999999888877777888643 322 24566555554
No 141
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=50.10 E-value=1.3e+02 Score=27.94 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001114 837 QLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~ 872 (1154)
++.+.+.+...+.+||..|++-+..+..-+|..++.
T Consensus 31 ~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~ 66 (101)
T 3u59_A 31 DKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSES 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555554444444444443333
No 142
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=49.96 E-value=1.1e+02 Score=28.47 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHH
Q 001114 824 VLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRAS 899 (1154)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~ 899 (1154)
+..|+-..+.-.....+++.+++.+.++-..+-.|+..+++++.-.+.+.-.++..|. .++..+-.++..+.
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~----~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK----EAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3445555555555666677777777777777777777777777777666555666666 44444444444444
No 143
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=49.42 E-value=65 Score=29.37 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=38.5
Q ss_pred HHHHHHHHhhcCcccccCcccccccchhhhhHHHHHHHHhccchHHHHHHHHH----------HHHHHHHhhhHHHHHHH
Q 001114 591 LASAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAM----------LKAKQMQCVSYEKRIQE 660 (1154)
Q Consensus 591 l~~~ia~~~~~~~~~~~~s~~~~~~~~~~~~a~~~t~~~l~~kde~~~~lq~~----------~~~~~~~~~~~e~RIr~ 660 (1154)
+..-|.-++..-|.-. +.--.-++|.+|+.|.+ |++.||.+ ...++...+.+--|||+
T Consensus 7 IN~~I~EL~~LiP~~~-~~~~k~nKg~IL~ksvd-----------YI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqE 74 (83)
T 4ath_A 7 INDRIKELGTLIPKSN-DPDMRWNKGTILKASVD-----------YIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQE 74 (83)
T ss_dssp HHHHHHHHHHHSCCCC-CTTCCCSHHHHHHHHHH-----------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhccCCCCC-CcccCcchHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4555666666655431 11111367888888654 77777554 44555556688889999
Q ss_pred HHHH
Q 001114 661 LEQR 664 (1154)
Q Consensus 661 LE~l 664 (1154)
||-.
T Consensus 75 LE~q 78 (83)
T 4ath_A 75 LEMQ 78 (83)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
No 144
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=48.66 E-value=93 Score=30.46 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=38.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHh
Q 001114 830 ALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRR 897 (1154)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~ 897 (1154)
+|.+-...++++..+=.+...|++.||-|++.+|..++-++-. =+|--.|.++.+.|-|
T Consensus 40 ML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~---------Lkrn~~qQnQQSlDiR 98 (167)
T 4gkw_A 40 MLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQL---------LKRNSQQQNQQSLDMR 98 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHH---------HHhhhHHHhHhhhhHH
Confidence 3333334444455555566677888888888888877776665 2466677778888855
No 145
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=48.14 E-value=1.8e+02 Score=27.86 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEE----VVMLGRELEMRQKLLDESQMNCAHLENCLH 881 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~el~~~~~~l~e~~~~~~~~en~~~ 881 (1154)
++...+|+.+...-...+.+.+.|+.....| ++.|+.||.+++.--++.+.-+..||--=.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ND 66 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3556788888888888889999999888776 888999999988888888888777775543
No 146
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=47.33 E-value=25 Score=26.79 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
.+++|+|++.++.+=..|..|++.++++|-+
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLLGE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHhcc
Confidence 4678899999999999999999999988854
No 147
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=47.01 E-value=1.3e+02 Score=29.12 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------hHHhhhHHHHHHHHHhhh
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCA-------HLENCLHEAREEAQTHLC 892 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~-------~~en~~~~~~~~~~~~~~ 892 (1154)
....+..|+.+|..-.....+++.+...+++|.+.|...|..-+..+.+..+-|. -||.-|+ +.+.++-
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~----el~~rle 93 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVK----EMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 4566777888888888888888888888888888888888876666666665554 3455555 4455555
Q ss_pred hHhHhHHHHHH
Q 001114 893 AADRRASEYSA 903 (1154)
Q Consensus 893 ~~d~~~~~~~~ 903 (1154)
.-..+..++.+
T Consensus 94 eeee~~~~L~~ 104 (129)
T 2fxo_A 94 DEEEMNAELTA 104 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 148
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=46.70 E-value=44 Score=43.85 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHh
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLEN 878 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en 878 (1154)
-..++.+++..|....+.+.+++.++..+.+++..++.+|...+..+.+.+..+..++.
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~ 920 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAA 920 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888999999888888888888887777766666666554443
No 149
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=46.17 E-value=1.4e+02 Score=29.31 Aligned_cols=41 Identities=7% Similarity=0.167 Sum_probs=35.1
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 422 ADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERL 462 (1154)
Q Consensus 422 ~~L~~V~~LP~aYga~LiEvVRRRew~~k~~~~as~LAEeL 462 (1154)
.-+..+..=|.-|+..-.|+.|||.|...+......+-.+|
T Consensus 88 ~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 88 ETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777899999999999999999999999988887765
No 150
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.96 E-value=40 Score=32.80 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHH
Q 001114 849 MEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAR 884 (1154)
Q Consensus 849 ~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~ 884 (1154)
..||+.|++-+..++..|+-..--|+-||+-|.|+.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444444444444444433333455666665443
No 151
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=45.25 E-value=35 Score=25.95 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
.+++|+|.+.++.+=..|..|.+.++.+|-+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 4678899999999999999999999988753
No 152
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=44.96 E-value=1.5e+02 Score=27.72 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHH
Q 001114 824 VLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRAS 899 (1154)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~ 899 (1154)
+..|+...+.-.....+++.+++...++-..+-.|+..+++++.-...+.-.++..|. +|+..+-.++..+.
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~----ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH----KSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4445555555556666777777777777777777777777777777766555666666 44444444454444
No 153
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.44 E-value=28 Score=32.81 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=47.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHhhcCc--cccc---CcccccccchhhhhHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Q 001114 577 TSKMEVENAKLKAELASAIALICSLCP--EMEY---ESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQC 651 (1154)
Q Consensus 577 t~~le~ena~l~~el~~~ia~~~~~~~--~~~~---~s~~~~~~~~~~~~a~~~t~~~l~~kde~~~~lq~~~~~~~~~~ 651 (1154)
...||.||.+|+.+++..=..+-.+.- .|.. -.+|= ..|+...| ..+.+.++.+++..|
T Consensus 21 i~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~--~~NPa~~a--------------~~~~~~~~e~Lq~E~ 84 (100)
T 1go4_E 21 VEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHM--SLNPTSVA--------------RQRLREDHSQLQAEC 84 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEE--SSCHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeee--cCChHHHH--------------HHHHHHHHHHHHHHH
Confidence 447999999999999988888766521 1111 11222 33443333 224457888999999
Q ss_pred hhHHHHHHHHHH
Q 001114 652 VSYEKRIQELEQ 663 (1154)
Q Consensus 652 ~~~e~RIr~LE~ 663 (1154)
..+..||+.||+
T Consensus 85 erLr~~v~~lEe 96 (100)
T 1go4_E 85 ERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHTTCC-
T ss_pred HHHHHHHHHHhc
Confidence 999999999886
No 154
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=44.29 E-value=1.8e+02 Score=27.80 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEV--------------VMLGRELEMRQKLLDESQMNCAHLENCLHEAREE 886 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~ 886 (1154)
...+.+|+..|+.-...-..++..+..+...+ ..+..++..+++-+|+..++.+-||+.++--+||
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 34566777777665555444444444433332 2233344477777888888777788777765555
Q ss_pred HHHhhhhHhH
Q 001114 887 AQTHLCAADR 896 (1154)
Q Consensus 887 ~~~~~~~~d~ 896 (1154)
----++.++.
T Consensus 99 l~FLKk~hee 108 (119)
T 3ol1_A 99 IAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544455543
No 155
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=44.23 E-value=1.7e+02 Score=26.01 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=26.6
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDV 274 (1154)
Q Consensus 241 Vd~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~I 274 (1154)
|+.+.|+..+..+......+...+..|...+..|
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999988888888777777766666554
No 156
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=43.54 E-value=23 Score=25.54 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=19.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Q 001114 645 KAKQMQCVSYEKRIQELEQRLSD 667 (1154)
Q Consensus 645 ~~~~~~~~~~e~RIr~LE~lL~~ 667 (1154)
.+++.+|.++|+..+.||..|..
T Consensus 4 ealekkcaalesklqalekklea 26 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999988753
No 157
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=41.66 E-value=63 Score=33.73 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEE----VVMLGRELEMRQKLLDESQMNCAHLE 877 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~el~~~~~~l~e~~~~~~~~e 877 (1154)
++....|+.++......+.+.++|+.....| |+.|+.|+..++.-.+..+.-|..||
T Consensus 55 Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 55 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 158
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=40.37 E-value=28 Score=29.22 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=27.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 833 DKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLD 867 (1154)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~ 867 (1154)
-|-..+.+|+.++..+..|-..|+.+++.++..+.
T Consensus 19 RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 19 KKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35577888888888888888888888887776654
No 159
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=39.75 E-value=38 Score=37.95 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 825 LKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQ 863 (1154)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~ 863 (1154)
..++.....+.+++..++.+..++.+|++.|+++.+...
T Consensus 174 ~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 174 SKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444556677777777777777777766665433
No 160
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=39.48 E-value=41 Score=43.80 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLK----AVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~el~~~~~~l~e 868 (1154)
..+.+|+..|+++.+...++..+++ +..+|++.|+.+++.++.+..|
T Consensus 928 ~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e 978 (1080)
T 2dfs_A 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978 (1080)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665543 4556667776666655554443
No 161
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.41 E-value=91 Score=30.85 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHh
Q 001114 823 LVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLEN 878 (1154)
Q Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en 878 (1154)
...+|+..++++.+.+..+..+|.....+...++.|++.++..++++|+.-+-||-
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666544443
No 162
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.85 E-value=45 Score=32.53 Aligned_cols=11 Identities=55% Similarity=0.591 Sum_probs=5.3
Q ss_pred hhhHHhhhHHH
Q 001114 873 CAHLENCLHEA 883 (1154)
Q Consensus 873 ~~~~en~~~~~ 883 (1154)
|+-||+-|.|+
T Consensus 61 ~~sLE~~l~e~ 71 (131)
T 3tnu_A 61 KASLENSLEET 71 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455555533
No 163
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.84 E-value=1.1e+02 Score=36.20 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=35.3
Q ss_pred hhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 969 AFLSRHREELLDKNRKVELAHEQLKKELEEKKELVKTLYTKH 1010 (1154)
Q Consensus 969 ~fl~~~~~~~~~r~~~~e~~~~~~~ke~~~k~~~~~~l~~k~ 1010 (1154)
.-+-+.+.++-+++.........+++|+...++++|.|-.|+
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567778888888888888899999999999999998888
No 164
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=38.52 E-value=2e+02 Score=25.16 Aligned_cols=34 Identities=9% Similarity=0.261 Sum_probs=28.3
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDV 274 (1154)
Q Consensus 241 Vd~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~I 274 (1154)
|+.+.|+..+..+......+...+..|+..+..|
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999988888888887777777655
No 165
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=38.41 E-value=46 Score=33.59 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=39.8
Q ss_pred hccchhhhhhHHHHH----HHHHHHHHHhhcCcccccCcccccccchhhhhHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 001114 575 AGTSKMEVENAKLKA----ELASAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQ 650 (1154)
Q Consensus 575 ~~t~~le~ena~l~~----el~~~ia~~~~~~~~~~~~s~~~~~~~~~~~~a~~~t~~~l~~kde~~~~lq~~~~~~~~~ 650 (1154)
.|-.+|+.|+..|+. +++..|+..... |.+.| || +-.+..++
T Consensus 9 ~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~------GDlsE--------Na--------------------eY~aak~~ 54 (158)
T 2p4v_A 9 EGYEKLKQELNYLWREERPEVTKKVTWAASL------GDRSE--------NA--------------------DYQYNKKR 54 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH------SCTTT--------CH--------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHhC------CCccc--------ch--------------------hHHHHHHH
Confidence 355678888888865 666666655333 33333 21 22223345
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001114 651 CVSYEKRIQELEQRLSDQYL 670 (1154)
Q Consensus 651 ~~~~e~RIr~LE~lL~~Q~~ 670 (1154)
..-.|.||+.||++|.+-..
T Consensus 55 q~~~e~rI~~L~~~L~~A~v 74 (158)
T 2p4v_A 55 LREIDRRVRYLTKCMENLKI 74 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHhhCee
Confidence 57789999999999987654
No 166
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=38.14 E-value=88 Score=28.45 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQM 871 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~ 871 (1154)
+.-|..|+..+.....-+.++-.+|..+..||+.||-.+|.....|+..+.
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345667776666666777888888888888888887777766666554433
No 167
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=37.64 E-value=6.9 Score=41.62 Aligned_cols=73 Identities=10% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEe
Q 001114 12 EGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (1154)
Q Consensus 12 ~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFD 85 (1154)
+..+.|.+..+|..+.|.+...+.+..|+...+...|||+..+-++..|.++...++...++.- +...|-||-
T Consensus 19 ~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~ME-DGDtIDV~l 91 (227)
T 3v7o_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDME-DNDIIEAHR 91 (227)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCC-CCCEEEEEe
Confidence 3456666688999999999999999999999999999999988888877788888888888764 556777773
No 168
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=37.30 E-value=91 Score=28.31 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHH
Q 001114 824 VLKLQSALADKSDQLSETQTKLKAVMEE----VVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRAS 899 (1154)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~ 899 (1154)
+..|++..+.....|.+++.....-++. |+.|..||..++..+..-... |+.+|. -+-+-|--++
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~E---Yq~Lln--------vK~~Le~EIa 73 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDE---YQELLD--------IKLALDMEIH 73 (86)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------HHHhhHHHHH
Confidence 4445555555555555555544332222 444444444333333222222 555555 2345566666
Q ss_pred HHHH
Q 001114 900 EYSA 903 (1154)
Q Consensus 900 ~~~~ 903 (1154)
.|-.
T Consensus 74 tYRk 77 (86)
T 1x8y_A 74 AYRK 77 (86)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 169
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.29 E-value=83 Score=26.14 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQ 863 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~ 863 (1154)
..-..+|+..+..-+++...|.+-|+..-++|..|+.||+.+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556688999999999999999999999999999999998753
No 170
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.13 E-value=2.2e+02 Score=26.24 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHHHHHhhh
Q 001114 837 QLSETQTKLKAVMEEVVM-------LGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSALRASAV 909 (1154)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~-------l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~ 909 (1154)
++..|.++|-.+.+.|-. |..+++.++.. +..-.+.+||.-+.++|...-.-...--+...|+++|....-
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~--~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544433 33334333332 233466788888888876544444444455566666655443
Q ss_pred h
Q 001114 910 K 910 (1154)
Q Consensus 910 r 910 (1154)
+
T Consensus 88 ~ 88 (93)
T 3s4r_A 88 R 88 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 171
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.35 E-value=82 Score=28.68 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 825 LKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
++=+.+|.+-=+....|-..|....+||+.|+.|++.++.+-+..|
T Consensus 35 E~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 35 EKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555566667777788889999999999999888877655
No 172
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.32 E-value=45 Score=36.26 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQ 863 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~ 863 (1154)
+.-+.+|+..+...+.+...+...|+.+.+||..|++||+.++
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667777777777766666666666666666666666544
No 173
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=35.96 E-value=72 Score=28.61 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
.-+.+|+.+|+-....|.+|..-+.+-..+|..|++.|..+..+|.+.+
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777666666666667777776666666665544
No 174
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.52 E-value=40 Score=29.01 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=29.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 832 ADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLD 867 (1154)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~ 867 (1154)
.-|-.++.+|+.++..+..|-+.|+.|++.++..|.
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446788999999999999999999999988887764
No 175
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=35.37 E-value=1.6e+02 Score=38.43 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001114 821 SELVLKLQSALADK---SDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLE 877 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~e 877 (1154)
..++.+|++.+++. .+++.+++++++.+.+|++.|+.+++.+.+..++.++.|.++.
T Consensus 959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666775544433 3444455666666777777777777666666655555544443
No 176
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=34.31 E-value=1.1e+02 Score=28.43 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=59.1
Q ss_pred CCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEE
Q 001114 12 EGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (1154)
Q Consensus 12 ~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVF 84 (1154)
+..+.|-+...|..+.|.+...+-++.|...-++.-|++++.+..|.-|.++-..++-..++.. +...|-+|
T Consensus 19 ~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~me-D~DiID~~ 90 (95)
T 2l76_A 19 PRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLG-VADIIDCV 90 (95)
T ss_dssp CCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCC-SSCEEEEE
T ss_pred CCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCC-CCCEEEEE
Confidence 3456666667999999999999999999999999999999999999988888887777777654 44445554
No 177
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=33.32 E-value=2.7e+02 Score=26.41 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCcccCCCCCCCchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Q 001114 798 MPEPHNILPCDATADSGLDPKVSSELVLKLQSALADKSDQLSETQTKLKAVMEE------------VVMLGRELEMRQKL 865 (1154)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~el~~~~~~ 865 (1154)
.|.|+--|.+-.+--+.-..+.--..+.+||..+..-..||.....||+.+.+- +-.=+.+...++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~K 90 (107)
T 2k48_A 11 IPNPLLGLDSTENLYFQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETK 90 (107)
T ss_dssp CCCSCCSCCCCCCCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccccccchhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444444445566789999999999999999999999998876 33344555566666
Q ss_pred Hhhhh
Q 001114 866 LDESQ 870 (1154)
Q Consensus 866 l~e~~ 870 (1154)
|.|.+
T Consensus 91 iaeLK 95 (107)
T 2k48_A 91 LGELK 95 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 178
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=33.29 E-value=1.4e+02 Score=32.66 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=29.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 826 KLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
+++..+.+...++.+++..+..+..+....+.+++..+.|.++
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~ 108 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQT 108 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555666667777777777777777777777777777665
No 179
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=33.27 E-value=65 Score=30.98 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhcCcccccCcccccccchhhhhHHHHHHHHhccchHHHHHHHHHHHHHHHH----------hhhHH
Q 001114 586 KLKAELASAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQ----------CVSYE 655 (1154)
Q Consensus 586 ~l~~el~~~ia~~~~~~~~~~~~s~~~~~~~~~~~~a~~~t~~~l~~kde~~~~lq~~~~~~~~~----------~~~~e 655 (1154)
+-+..|...+..++..-|.-..... .-..+.+|..|.+ |++.||.+...++.. ...+.
T Consensus 37 rRR~~In~~~~~L~~lvP~~~~~~~-k~~Ka~IL~~aie-----------YIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~ 104 (118)
T 4ati_A 37 RRRFNINDRIKELGTLIPKSNDPDM-RWNKGTILKASVD-----------YIRKLQREQQRAKDLENRQKKLEHANRHLL 104 (118)
T ss_dssp HHHHHHHHHHHHHHHHSCCC----C-CCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHhhccCccc-cCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788889999998776543210 0124556666544 999999888777654 44677
Q ss_pred HHHHHHHHH
Q 001114 656 KRIQELEQR 664 (1154)
Q Consensus 656 ~RIr~LE~l 664 (1154)
.||++||-+
T Consensus 105 ~riqeLE~~ 113 (118)
T 4ati_A 105 LRVQELEMQ 113 (118)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 788888863
No 180
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.19 E-value=98 Score=28.17 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhHHHHH
Q 001114 856 GRELEMRQKLLDESQMNCAHLENCLHEARE 885 (1154)
Q Consensus 856 ~~el~~~~~~l~e~~~~~~~~en~~~~~~~ 885 (1154)
..++..+++-+|+..|+.+-||.-++--.|
T Consensus 48 E~d~~~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 48 ENTLQSFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334447788888888888888776664333
No 181
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=32.91 E-value=1.4e+02 Score=25.67 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=27.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001114 834 KSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDES 869 (1154)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~ 869 (1154)
|.+-|.+++.|+..+..-|+.+.+|++.+...++.+
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~ 39 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATS 39 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456677788888888888888888888777776654
No 182
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=32.81 E-value=1.2e+02 Score=33.75 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=48.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHH-HHH
Q 001114 827 LQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYS-ALR 905 (1154)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~-~l~ 905 (1154)
++..+.+...++.+++..|.....+....+++++..+.|++.--..-.-|+ .++..+..+........ .|+
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~--------~a~~~~~~a~a~~~~~~~~l~ 139 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN--------TAKATLNNAKAEMDVVQENIK 139 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666667777777777777777777777666654322211122 22222222221111111 133
Q ss_pred Hhhhhhhhhhhhhccc-cccCC-ccc
Q 001114 906 ASAVKLRGLFERLRSC-VFASE-GAG 929 (1154)
Q Consensus 906 ~~~~r~~gl~~~~~~~-~~~p~-~~~ 929 (1154)
..-..+.-+...+..| |.||. |+.
T Consensus 140 ~~~~~l~~a~~~l~~~~i~AP~~G~V 165 (369)
T 4dk0_A 140 QAEIEVNTAETNLGYTKITSPIDGTV 165 (369)
T ss_dssp HHHHHHHHHHHTTCCSSCCCSCCSCC
T ss_pred HHHHHHHHHHHHhhcCEEECCCCeEE
Confidence 3334555566666665 69997 763
No 183
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.68 E-value=7.9e+02 Score=36.01 Aligned_cols=169 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEY 901 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~ 901 (1154)
....+.++.+..+.+++.-==+||....+.|+.|+.||...+..|.+.+.. -|..|. +-...+..|++.-.+.
T Consensus 1906 ~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~e---a~~~l~----~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A 1906 LLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQ---ANQKLK----QMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHH
Q ss_pred HHHHHhh-hhhhhhhhhhcccc-----ccCCcccchhhhHHHHHHhhcccCCCCCCcChHHHHHHHHHhh---hhhhhhh
Q 001114 902 SALRASA-VKLRGLFERLRSCV-----FASEGAGGFADSLRTLAQSLANSISDNEDDGTAEFRKCIRVLA---DRVAFLS 972 (1154)
Q Consensus 902 ~~l~~~~-~r~~gl~~~~~~~~-----~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~f~~~i~~l~---d~v~fl~ 972 (1154)
...++-. ....-...++..|. ..|. .++-.-|+. -..+....-.-|+ +.+.=|.
T Consensus 1979 ~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa---------~Pkr~~l~~--------ae~~l~~~~~~L~~~~~~L~~le 2041 (3245)
T 3vkg_A 1979 RELQVQLDVRNKEIAVQKVKAYADLEKAEPT---------GPLREEVEQ--------LENAANELKLKQDEIVATITALE 2041 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC----------------CHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------ChHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhh
Q 001114 973 RHREELLDKNRKVELAHEQLKKE---LEEKKELVKTLYTKHQLEK 1014 (1154)
Q Consensus 973 ~~~~~~~~r~~~~e~~~~~~~ke---~~~k~~~~~~l~~k~~~~~ 1014 (1154)
...+++-+.|...-+=..+|..| .+.|-+-..+|.+.|.-||
T Consensus 2042 ~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2042 KSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
No 184
>1sb0_B Protein C-MYB; CREB-binding protein, transcriptional activation, constitutive activation, LXXLL motif, KIX; NMR {Mus musculus} PDB: 2agh_A
Probab=32.57 E-value=23 Score=25.08 Aligned_cols=12 Identities=67% Similarity=0.750 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q 001114 655 EKRIQELEQRLS 666 (1154)
Q Consensus 655 e~RIr~LE~lL~ 666 (1154)
|+||++||=+|-
T Consensus 2 EkriKElELLLM 13 (26)
T 1sb0_B 2 EKRIKELELLLM 13 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 789999998884
No 185
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=32.13 E-value=1.2e+02 Score=29.45 Aligned_cols=78 Identities=5% Similarity=0.046 Sum_probs=51.4
Q ss_pred eEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCC------CEEEE--ec-CCccc-cccccccccCCCCCceEEE
Q 001114 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFN------DQLVL--CL-DMKLE-PQKLLSAYRLPSDDKEVFI 83 (1154)
Q Consensus 14 ~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~------~QILL--ts-gGkl~-k~~~L~~Y~l~~denEIFV 83 (1154)
-.+||+++.. -+++-...+.++.+++..++.+.+..-+ +++|. .+ |.|.+ +.+-.+-...-+-...+||
T Consensus 11 ~~~VY~~Dhs-y~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfv 89 (120)
T 2dhz_A 11 FCRVYMPDHS-YVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFA 89 (120)
T ss_dssp EECEECTTSC-CCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEE
T ss_pred EEEEEeccCc-eEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEE
Confidence 4778887544 3445566789999999999999998765 77764 54 55543 3222211111122479999
Q ss_pred EeccccCCC
Q 001114 84 FNKLRLQSN 92 (1154)
Q Consensus 84 FDRrll~~~ 92 (1154)
+.|..++.-
T Consensus 90 c~kd~~d~L 98 (120)
T 2dhz_A 90 CTRDSYEAL 98 (120)
T ss_dssp ECTTTTTTC
T ss_pred eehHhcccc
Confidence 999888553
No 186
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=31.98 E-value=2.2e+02 Score=25.91 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRE 858 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e 858 (1154)
...++..|+..+..-.+...+++.+...+++|.+.|...
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777777554
No 187
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=31.32 E-value=1e+02 Score=32.30 Aligned_cols=75 Identities=9% Similarity=0.224 Sum_probs=59.4
Q ss_pred cCCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCCCCceEEEEec
Q 001114 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (1154)
Q Consensus 11 ~~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~denEIFVFDR 86 (1154)
...++.|.+..+|..+.|++...+.+..|+...+...|+|.+++-++.-|.++...++-..+..- ++..|=||-+
T Consensus 18 ~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~e-d~d~I~~~~e 92 (209)
T 3uf8_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDME-DNDIIEAHRE 92 (209)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCC-TTEEEEEECS
T ss_pred CCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhc-ccccchhhcc
Confidence 44578888888999999999999999999999999999999999999877777666666555543 4445555544
No 188
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=30.52 E-value=36 Score=27.96 Aligned_cols=28 Identities=36% Similarity=0.316 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 001114 852 VVMLGRELEMRQKLLDESQMNCAHLENCLHEAREE 886 (1154)
Q Consensus 852 ~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~ 886 (1154)
|.+| .|||.+..+|+++ |++.|+||.+.
T Consensus 22 v~nL-~ELE~is~rlg~~------Y~~~LeeaK~k 49 (53)
T 1x9b_A 22 VRNL-NELEALAVRLGKS------YRIQLDQAKEK 49 (53)
T ss_dssp HHHH-HHHHHHHHHHCSH------HHHHHHHHHHH
T ss_pred HHhH-HHHHHHHHHHchH------HHHHHHHHHHh
Confidence 4444 5899999999976 99999988765
No 189
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=30.28 E-value=6.6e+02 Score=28.62 Aligned_cols=52 Identities=6% Similarity=0.038 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 001114 359 PRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVF 410 (1154)
Q Consensus 359 PsL~~~~~eL~d~l~~~~~~KNeL~~~~~~~Lr~IS~IQs~I~evk~~L~~L 410 (1154)
..+..+...|...+..+.+.|..|...+-..-..+-.++.+|-.++..|..|
T Consensus 201 ~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql 252 (373)
T 3hhm_B 201 QRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQL 252 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 4588888889999999999999988887777666667777777777666443
No 190
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=29.80 E-value=96 Score=31.12 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=17.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHH
Q 001114 648 QMQCVSYEKRIQELEQRLSDQYL 670 (1154)
Q Consensus 648 ~~~~~~~e~RIr~LE~lL~~Q~~ 670 (1154)
.++..-.|.||+.||+.|.+-..
T Consensus 52 k~~q~~~e~ri~~Le~~L~~a~v 74 (158)
T 1grj_A 52 REQQGFCEGRIKDIEAKLSNAQV 74 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCee
Confidence 34456679999999999987554
No 191
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.75 E-value=3.4e+02 Score=25.07 Aligned_cols=42 Identities=7% Similarity=0.132 Sum_probs=28.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001114 830 ALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQM 871 (1154)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~ 871 (1154)
.+....+++.+++.+|..+..+++.++.+++.++..+.+...
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444566677777777777777777777777777776654
No 192
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.57 E-value=1.6e+02 Score=24.37 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001114 825 LKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDES 869 (1154)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~ 869 (1154)
..++..+.+........+..+......+..+..+|+..+.-+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433444444444444444444444444443333333
No 193
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=29.32 E-value=1.7e+02 Score=24.43 Aligned_cols=44 Identities=7% Similarity=0.025 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 824 VLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLD 867 (1154)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~ 867 (1154)
+.+|-+.+.+-+.+++.|.+++..+-.+|..-+.|-..--..||
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444444444444444444444444444444333333333
No 194
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=29.01 E-value=1.3e+02 Score=27.36 Aligned_cols=71 Identities=10% Similarity=0.106 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhH
Q 001114 824 VLKLQSALADKSDQLSETQTKLKAV---MEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAA 894 (1154)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~ 894 (1154)
+...+..+++-..||.+++.+|... -..+..++.-|...+.+..|....-..++.+.+.|..+.+...++.
T Consensus 4 L~~f~~~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~ 77 (118)
T 3uul_A 4 LDSYQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSD 77 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4567888888899999998888652 1225555555555555555555544557788887777776555443
No 195
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=28.89 E-value=4.6e+02 Score=26.40 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLH 881 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~ 881 (1154)
.....++.++..-+.++.+.+.+-..+.-.|+.|..+++.+-..|..-.+....+.-.|.
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888888888888999999999888888877776554444444
No 196
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=28.82 E-value=78 Score=29.28 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=47.9
Q ss_pred EEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEecCCccccccccccccCCC
Q 001114 16 LVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPS 76 (1154)
Q Consensus 16 ~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLtsgGkl~k~~~L~~Y~l~~ 76 (1154)
.++++.+|++..+.+.+.+++-++-.--.+++|+++++--|.-.+-.++-..+++.-++|+
T Consensus 12 v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpn 72 (90)
T 2al3_A 12 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPN 72 (90)
T ss_dssp EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCS
T ss_pred EEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCC
Confidence 5566789999999999999999998888999999988776766555555556665556653
No 197
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=28.70 E-value=2.3e+02 Score=25.57 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHh
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKA---VMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRR 897 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~ 897 (1154)
+..+...+..+++-..||.+++..|.. +-..+..++.-|...+.+..|....-..++.+...|..+.+...++.+..
T Consensus 1 el~L~~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~ 80 (119)
T 3uun_A 1 EVNLDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEE 80 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHH
Q ss_pred HHHHHHHHHhhhhhhhhhhh
Q 001114 898 ASEYSALRASAVKLRGLFER 917 (1154)
Q Consensus 898 ~~~~~~l~~~~~r~~gl~~~ 917 (1154)
..=-..|.....|=..|..+
T Consensus 81 ~~i~~~l~~l~~rw~~L~~~ 100 (119)
T 3uun_A 81 TEVQEQMNLLNSRWECLRVA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 198
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=28.45 E-value=3.7e+02 Score=27.10 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHhhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001114 821 SELVLKLQSALADKSDQLSETQ-------TKLKAVMEEVVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~el~~~~~~l~e~~~~ 872 (1154)
...+..|+..+......+.+++ .-+..+.+|+..|+-+++....++...|..
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777666666666 345566667777777777777777766663
No 199
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.21 E-value=1.1e+02 Score=26.17 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 001114 847 AVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 847 ~~~~~~~~l~~el~~~~~~l~e 868 (1154)
.+..+|+.|+.|+..++.+|.|
T Consensus 41 ~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 41 ALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333445555555555555543
No 200
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.66 E-value=1.1e+02 Score=25.80 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 837 QLSETQTKLKAVMEEVVMLGRELEM 861 (1154)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~el~~ 861 (1154)
.+.+++.+...+..+-..|+.|++.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~ 47 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTL 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333333
No 201
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=27.66 E-value=1.7e+02 Score=26.58 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001114 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLD 867 (1154)
Q Consensus 822 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~ 867 (1154)
.+|-+|.-++.+-.++-.+.|.||++-.+|++.|+..|+.--..+.
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~ 71 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIE 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHH
Confidence 3566788888888888888999999999999999988885544433
No 202
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.55 E-value=77 Score=36.63 Aligned_cols=9 Identities=11% Similarity=0.471 Sum_probs=7.3
Q ss_pred hhhhhhhhh
Q 001114 909 VKLRGLFER 917 (1154)
Q Consensus 909 ~r~~gl~~~ 917 (1154)
+|||.+..+
T Consensus 65 vRvRP~~~~ 73 (403)
T 4etp_A 65 LRIRPALKN 73 (403)
T ss_dssp EEECCCCTT
T ss_pred EEeCCCCCc
Confidence 899998765
No 203
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=27.45 E-value=1.3e+02 Score=27.61 Aligned_cols=49 Identities=6% Similarity=0.052 Sum_probs=42.9
Q ss_pred cCCeEEEEEecCCceeEecCCCCCCHHHHHHHHHHHhCCCCCCEEEEec
Q 001114 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCL 59 (1154)
Q Consensus 11 ~~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~IP~~~QILLts 59 (1154)
.++.+.|-...+|..+.+.+..-.+++.|.+-|...++++..+.+.|.-
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky 51 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKW 51 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEE
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 4567899999999999888888899999999999999999888887754
No 204
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=27.27 E-value=5.6e+02 Score=26.86 Aligned_cols=39 Identities=8% Similarity=0.136 Sum_probs=26.2
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVE 279 (1154)
Q Consensus 241 Vd~e~Lrk~ae~C~~s~~~f~~Kv~~L~~~i~~Ik~~Vd 279 (1154)
|=.+.+|++++....+-..+...+..+...+......++
T Consensus 116 VVA~Evr~La~~t~~~~~~I~~~i~~i~~~~~~~~~~~~ 154 (213)
T 3g67_A 116 IVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLE 154 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688888888888877777777776665554444333
No 205
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=27.15 E-value=96 Score=23.61 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e 868 (1154)
.+++|+|.+.+..+=+.|..|.+.++++|-|
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3567788888888888888888888887754
No 206
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=27.07 E-value=3.8e+02 Score=27.06 Aligned_cols=66 Identities=24% Similarity=0.299 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHHHH-Hhhhhhhhhhhhhc
Q 001114 850 EEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSALR-ASAVKLRGLFERLR 919 (1154)
Q Consensus 850 ~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~l~-~~~~r~~gl~~~~~ 919 (1154)
+||+.+..+|+.+...++....-|..||.=|+ -+-.++++.......|+.-+ ..--+||-|-.++.
T Consensus 21 eEvaR~E~dLEraEERae~aE~k~~eLEeeL~----~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLK 87 (155)
T 2efr_A 21 NEVARLKKLLERAEERAELSEGKSAELEEELK----TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK 87 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999888 77777777777776666533 22367777777776
No 207
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=27.03 E-value=1.3e+02 Score=33.11 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHHHHHhhhhh-
Q 001114 835 SDQLSETQTKLK--AVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSALRASAVKL- 911 (1154)
Q Consensus 835 ~~~~~~~~~~~~--~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~r~- 911 (1154)
.+.+.++ ..|. .+.+++..++.|+++.++.+.|.=.. .|.-|+||--.++--+...+.|+.||..+|.+..|-
T Consensus 85 ~~~~~~~-~~lq~~~~~~~L~~~~~e~ek~RK~~Ke~w~r---~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e 160 (279)
T 3qwe_A 85 GTLAMET-VAQQKRDYYQPLAAKRTEIEKWRKEFKEQWMK---EQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDS 160 (279)
T ss_dssp HHHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC----
T ss_pred HHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q ss_pred ---------hhhhhhhc
Q 001114 912 ---------RGLFERLR 919 (1154)
Q Consensus 912 ---------~gl~~~~~ 919 (1154)
|+|..|.+
T Consensus 161 ~~q~~~~~~K~lek~r~ 177 (279)
T 3qwe_A 161 APQASPGPSKQQERRRR 177 (279)
T ss_dssp ---------HHHHHHHH
T ss_pred cccccccccchhhHHHh
No 208
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.94 E-value=2.1e+02 Score=23.72 Aligned_cols=42 Identities=10% Similarity=0.117 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 001114 837 QLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLH 881 (1154)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~ 881 (1154)
++..++.++....+++..++.+++.++..+++...+ ++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~---l~~~~~ 47 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEK---LNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 344555555555556666666666666666666666 555444
No 209
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.71 E-value=2.7e+02 Score=28.47 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=22.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 001114 977 ELLDKNRKVELAHEQLKKELEEKKELVKTLYTKHQLEKQANKE 1019 (1154)
Q Consensus 977 ~~~~r~~~~e~~~~~~~ke~~~k~~~~~~l~~k~~~~~~~~~~ 1019 (1154)
.+.+|+.++|-...-+.=|+- =.+|.|-.++..|-.+-++
T Consensus 122 ~L~Ekl~~lEKe~a~~eid~~---~eLKalQ~~~eqE~~~H~~ 161 (168)
T 3o0z_A 122 EAQDMLNHSEKEKNNLEIDLN---YKLKSLQQRLEQEVNEHKV 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 467777777543333322211 3467777777777666553
No 210
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.74 E-value=1.9e+02 Score=27.60 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~ 872 (1154)
...+|.+|+..|... |..|.+.+.++..|+.|+...+..|+..++=
T Consensus 22 ~~~ei~~L~~~L~~A-------EeaL~~Kq~~idelk~ei~q~~~~lE~I~vL 67 (110)
T 2v4h_A 22 ASMQLEDLRQQLQQA-------EEALVAKQELIDKLKEEAEQHKIVMETVPVL 67 (110)
T ss_dssp SCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666776555444 4444555555555555555555555554443
No 211
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.63 E-value=1.7e+02 Score=26.72 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHHHHHHhhhhhhhhhhhh
Q 001114 839 SETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYSALRASAVKLRGLFERL 918 (1154)
Q Consensus 839 ~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~r~~gl~~~~ 918 (1154)
+.++.+++.+.+++..|..|+......|.+.. +..-...+=+..-+||.++-.|-.+=|+.-=.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~----------------~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~ 67 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRD----------------AKQTVQKHIDLLHTYNEIRDIALGMIGKVAEH 67 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSC----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777776665321 11112233355679999999887766666555
Q ss_pred ccc
Q 001114 919 RSC 921 (1154)
Q Consensus 919 ~~~ 921 (1154)
+.|
T Consensus 68 rgv 70 (85)
T 3viq_B 68 EKC 70 (85)
T ss_dssp TTS
T ss_pred cCC
Confidence 544
No 212
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=25.44 E-value=4.2e+02 Score=25.24 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q 001114 837 QLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENC 879 (1154)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~ 879 (1154)
.|.+++.+|..+..|=+.|..|+++.+..+|+...- ||+-
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K---yE~E 60 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK---LQEE 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHH
Confidence 466777777777777677777777777766666666 5553
No 213
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.33 E-value=8.1e+02 Score=28.08 Aligned_cols=15 Identities=7% Similarity=0.439 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 001114 258 RQFENKVSQFKQIFD 272 (1154)
Q Consensus 258 ~~f~~Kv~~L~~~i~ 272 (1154)
+.|..+|.+|+..+.
T Consensus 63 r~~~~rIe~L~~~L~ 77 (390)
T 1deq_A 63 QDFTSRINKLRDSLF 77 (390)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344444444444333
No 214
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.18 E-value=1.9e+02 Score=26.19 Aligned_cols=19 Identities=5% Similarity=0.097 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 001114 852 VVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 852 ~~~l~~el~~~~~~l~e~~ 870 (1154)
++.|..+|+.+...|++.-
T Consensus 58 ~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 58 TQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 215
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.67 E-value=3.3e+02 Score=26.15 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 001114 160 CERLLREQKVQERAVEVGRGNLEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKL 220 (1154)
Q Consensus 160 ce~Lv~Ei~vq~raL~aAvaNLe~~~~~lek~f~ef~~~~~qll~~~~~LL~~we~dLe~L 220 (1154)
+..=+.++.-+.++|.+=+..+......++....+....+...+..+...+..++..|..+
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344556666666777777777777777777777777777666777777777666665544
No 216
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=24.62 E-value=2e+02 Score=25.55 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=44.7
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHH
Q 001114 829 SALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEY 901 (1154)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~ 901 (1154)
..+.+.++.|+++...+..+..---.+..||+.--.+||+...+ +. .|+.++..+-+|+..+
T Consensus 12 ~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~-------~d----~~~~~L~~~~~r~~~~ 73 (82)
T 2nps_D 12 NMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHE-------LE----STQSRLDNVMKKLAKV 73 (82)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HH----HHHHHHHHHHHHHHHH
Confidence 35667889999999999999988889999999999999976555 44 6666666666665543
No 217
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=24.14 E-value=7.1e+02 Score=26.93 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001114 432 PAYRACLAEVVRRKASMKLY 451 (1154)
Q Consensus 432 ~aYga~LiEvVRRRew~~k~ 451 (1154)
..|..+|+|=.||.-|.--+
T Consensus 189 ~~~r~AL~EERrRycflv~~ 208 (253)
T 2d1l_A 189 QAVRKALIEERGRFCTFISM 208 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57888899998888776433
No 218
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.52 E-value=3.5e+02 Score=27.23 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001114 835 SDQLSETQTKLKAVMEEVVMLGRELE 860 (1154)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~l~~el~ 860 (1154)
.+.|..++..+..+..+|..|..||.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~ 92 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIA 92 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777776666
No 219
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.49 E-value=7.3e+02 Score=29.14 Aligned_cols=109 Identities=7% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhccccccccCCCCccccccccCchhhhhhccchHHHHHHHHHHHHHH
Q 001114 293 LEMMIKEHQRFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPRMQACDRSISKLL 372 (1154)
Q Consensus 293 Le~~l~e~~~li~Eq~siaqsL~kD~e~V~kL~dd~~~~~lssS~~s~davs~Ls~ma~~Htk~lLPsL~~~~~eL~d~l 372 (1154)
|..+|.+.++ ++...+..|...+..+.+.-.+ ..........--+.-+....++++.+....
T Consensus 52 LqglL~kqer---dv~~rI~kLkn~L~~~s~s~~~---------------s~~y~~~~~~~lk~~~~q~~dndn~~~e~S 113 (491)
T 1m1j_A 52 MQGIIDDTDQ---NYSQRIDNIRQQLADSQNKYKT---------------SNRVIVETINILKPGLEGAQQLDENYGHVS 113 (491)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTTH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhh---hHHHHHHHHHHHHHHHHhhcch---------------HHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhh
Q 001114 373 DFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVFREAMVRQDD 419 (1154)
Q Consensus 373 ~~~~~~KNeL~~~~~~~Lr~IS~IQs~I~evk~~L~~L~e~L~rq~d 419 (1154)
..+-..-.-|-..+-..++.|..+|..|.++..+|..|..++..+.+
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 220
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=23.20 E-value=4.7e+02 Score=27.83 Aligned_cols=96 Identities=19% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHH-----HHHHHHHHH--------HHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhh
Q 001114 826 KLQSALADKSDQLSETQTKLKAVMEE-----VVMLGRELE--------MRQKLLDESQMNCAHLENCLHEAREEAQTHLC 892 (1154)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~el~--------~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~ 892 (1154)
+|...|-+-+..-..++++|..+.+. |.-|..-++ ..+.-.-|...-+++||.|+-|.+...+..+.
T Consensus 72 eLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e~k~~~~~leK~~~elkK~~rksqk 151 (222)
T 3ok8_A 72 ILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDK 151 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhcc
Q ss_pred hHhH-------hHHHHHHHHHhhhhhhhhhhhhccc
Q 001114 893 AADR-------RASEYSALRASAVKLRGLFERLRSC 921 (1154)
Q Consensus 893 ~~d~-------~~~~~~~l~~~~~r~~gl~~~~~~~ 921 (1154)
.+.. |.+||++..+-|.|===+=||.|-|
T Consensus 152 ~~~k~~e~v~~~q~el~~f~~~s~r~Al~EErRRYc 187 (222)
T 3ok8_A 152 NAREMKESVNRLHAQMQAFVSESKRAAELEEKRRYR 187 (222)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 221
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.20 E-value=71 Score=27.13 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001114 835 SDQLSETQTKLKAVMEEVVMLGRELEMRQKL 865 (1154)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~ 865 (1154)
-..+.+|+.++..+..+-..|+.+++.++..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444444433
No 222
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.15 E-value=1.4e+02 Score=31.31 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 824 VLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
-++=+.+|.+-=+....|-..|....+||+.|+.|++.++.+.+..|
T Consensus 103 AE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 103 AEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666777778888899999999999999999988776
No 223
>3brv_A Inhibitor of nuclear factor kappa-B kinase subuni; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Synthetic} PDB: 3brt_A
Probab=22.68 E-value=26 Score=28.77 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.0
Q ss_pred HHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 001114 861 MRQKLLDESQMNCAHLENCLHEAREEA 887 (1154)
Q Consensus 861 ~~~~~l~e~~~~~~~~en~~~~~~~~~ 887 (1154)
++..+++|.+.=|-+|+++|+++.++.
T Consensus 7 ~~~~lleEn~~~~~~L~sliqdt~~eq 33 (48)
T 3brv_A 7 KSEELVAEAHNLCTLLENAIQDTVREQ 33 (48)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556789999999999999999888773
No 224
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=22.08 E-value=2.4e+02 Score=26.52 Aligned_cols=56 Identities=20% Similarity=0.148 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHH
Q 001114 843 TKLKAVMEEVVMLGRELEMRQKLLDES-----QMNCAHLENCLHEAREEAQTHLCAADRRASEYS 902 (1154)
Q Consensus 843 ~~~~~~~~~~~~l~~el~~~~~~l~e~-----~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~ 902 (1154)
..+..+.++|..|+.||+..+.-|... |..-....+.|.+.|+.|- .+|--+.+|.
T Consensus 19 ~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaY----D~ED~iD~f~ 79 (115)
T 3qfl_A 19 KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSY----VIEDVVDKFL 79 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 346778888999999999888877543 3345667888888888764 3444455554
No 225
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.92 E-value=3.1e+02 Score=26.52 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 001114 160 CERLLREQKVQERAVEVGRGNLEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLR 221 (1154)
Q Consensus 160 ce~Lv~Ei~vq~raL~aAvaNLe~~~~~lek~f~ef~~~~~qll~~~~~LL~~we~dLe~Lr 221 (1154)
+..=+.++.-+.++|.+=+..+......++....+....+...+..+...+..++..|..++
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556666666666666666666677777666666666666666666666666655443
No 226
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.92 E-value=2.2e+02 Score=26.97 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhH
Q 001114 837 QLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLH 881 (1154)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~ 881 (1154)
|++=++++|....+..+.+++|+..-...++-....|..|-.-+.
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777777666667766666666666555
No 227
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.91 E-value=9.4e+02 Score=27.57 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 001114 301 QRFINEQKSIMQSLSKDV 318 (1154)
Q Consensus 301 ~~li~Eq~siaqsL~kD~ 318 (1154)
+..|.+|..-+|.|..|+
T Consensus 140 q~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 140 QKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344667777777888777
No 228
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=21.71 E-value=4.3e+02 Score=23.59 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhhHhHhHHHHH
Q 001114 827 LQSALADKSDQLSETQTKLKAV----MEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRASEYS 902 (1154)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~~d~~~~~~~ 902 (1154)
|++.-+.--.+|.+++.....- ...|+.|..||..++..+..-... |+.+|. -+-+-|--++.|-
T Consensus 6 l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~E---Yq~Lln--------vK~~Ld~EIatYR 74 (84)
T 1gk4_A 6 LKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLRE---YQDLLN--------VKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------HHHhhHHHHHHHH
Confidence 3333333344444444443322 222444444444444433322222 566665 2345566666665
Q ss_pred H
Q 001114 903 A 903 (1154)
Q Consensus 903 ~ 903 (1154)
.
T Consensus 75 k 75 (84)
T 1gk4_A 75 K 75 (84)
T ss_dssp H
T ss_pred H
Confidence 5
No 229
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.49 E-value=1.6e+02 Score=26.40 Aligned_cols=50 Identities=20% Similarity=0.135 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHH
Q 001114 835 SDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAR 884 (1154)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~ 884 (1154)
.+.|.+||.||.....-|..|...+-.-+..+|..+.-|++|-..+.+..
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35778899999888888999999999999999999999889988887544
No 230
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=21.46 E-value=3.5e+02 Score=26.16 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHH
Q 001114 820 SSELVLKLQSALADKSDQLSETQTKLKAVM----EEVVMLGRELEMRQKLLDESQMNCAHLENCLHE 882 (1154)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~ 882 (1154)
.+..|..|+..++.-...+..+...=..++ .=|+.|..||+..+...++...+|-.|..-+.+
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777766655555544433222222 227777777777777666666666666665553
No 231
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=21.37 E-value=2.4e+02 Score=23.46 Aligned_cols=30 Identities=7% Similarity=0.069 Sum_probs=14.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001114 831 LADKSDQLSETQTKLKAVMEEVVMLGRELE 860 (1154)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~l~~el~ 860 (1154)
+++-+.++.+|.+|+..+-.+|+.|+.++.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 232
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.32 E-value=1.4e+02 Score=27.56 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001114 834 KSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMN 872 (1154)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~ 872 (1154)
|-.+..++|.....+..||..|+.|+..++..+|....-
T Consensus 46 r~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 46 RVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888888777766655
No 233
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.24 E-value=2.3e+02 Score=25.07 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhcCcccccCcccccccchhhhhHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHH
Q 001114 586 KLKAELASAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYE 655 (1154)
Q Consensus 586 ~l~~el~~~ia~~~~~~~~~~~~s~~~~~~~~~~~~a~~~t~~~l~~kde~~~~lq~~~~~~~~~~~~~e 655 (1154)
+-+..|...+..|+..-|....+-+ ....+|..|. +|+++||.+...++.++..++
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~---sK~~iL~~Ai-----------~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKA---SRAQILDKAT-----------EYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCC---CHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCc---cHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888999999887653221 2344555543 488888888777766665443
No 234
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.19 E-value=1e+02 Score=24.83 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 001114 821 SELVLKLQSALADKSDQLSETQTKLKAVMEEVV 853 (1154)
Q Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (1154)
.+.|++|+.-=++-.++|..+|.||.++.+.+.
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777666544
No 235
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=21.04 E-value=1.9e+02 Score=27.72 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHhhhh
Q 001114 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCA 893 (1154)
Q Consensus 838 ~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~~~~~~~en~~~~~~~~~~~~~~~ 893 (1154)
..|+.+..+.+..+...|+++|++....-.+ ||-++++++|+...+.|.
T Consensus 1 ~~~t~~~~~~lq~~~~ql~~qL~k~~~~r~~-------Le~~w~~k~E~~k~qV~~ 49 (112)
T 1x79_B 1 MAETRDQVKKLQLMLRQANDQLEKTMKDKQE-------LEDFIKQSSEDSSHQISA 49 (112)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
No 236
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.57 E-value=76 Score=27.84 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=27.5
Q ss_pred CchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 001114 818 KVSSELVLKLQSALADKSDQLSETQTKLKAVMEEV 852 (1154)
Q Consensus 818 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (1154)
+.++..+.+|+..|.+|+..|.+|+.+|.++-.-+
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44788899999999999999999999888776543
No 237
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.14 E-value=1.9e+02 Score=24.72 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 001114 825 LKLQSALADKSDQLSETQTKLKAVMEEVVMLG 856 (1154)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 856 (1154)
.+|+..+.+-.....+|+.+++.+..||..|+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 238
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.08 E-value=1.3e+02 Score=26.60 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=22.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001114 833 DKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (1154)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~l~e~~ 870 (1154)
-|.+.|.+||.++..+..+...|..|-+.++..++.++
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777776665555555555555444433
Done!