Your job contains 1 sequence.
>001115
MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH
SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP
RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANED
NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV
KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP
DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT
TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD
RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI
LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG
KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG
CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR
VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP
GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR
FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA
SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV
YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR
KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS
VIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELR
LKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSI
KPSMLTGKWFTA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001115
(1152 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2088644 - symbol:RRP5 "Ribosomal RNA Processin... 2009 9.5e-208 1
MGI|MGI:1341788 - symbol:Pdcd11 "programmed cell death 11... 834 1.6e-87 2
RGD|1304933 - symbol:Pdcd11 "programmed cell death 11" sp... 830 2.1e-87 2
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 880 8.4e-87 1
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 879 1.1e-86 1
UNIPROTKB|Q14690 - symbol:PDCD11 "Protein RRP5 homolog" s... 838 6.2e-84 2
UNIPROTKB|F1PLK8 - symbol:PDCD11 "Uncharacterized protein... 844 5.9e-83 1
UNIPROTKB|F1S842 - symbol:LOC100157027 "Uncharacterized p... 824 7.9e-81 1
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p... 824 8.1e-81 1
UNIPROTKB|F1P3T9 - symbol:PDCD11 "Uncharacterized protein... 625 2.3e-76 2
ZFIN|ZDB-GENE-030131-4076 - symbol:pdcd11 "programmed cel... 662 3.5e-62 2
POMBASE|SPCC1183.07 - symbol:SPCC1183.07 "U3 snoRNP-assoc... 452 6.5e-49 2
CGD|CAL0005606 - symbol:orf19.1578 species:5476 "Candida ... 482 1.0e-45 3
DICTYBASE|DDB_G0286941 - symbol:DDB_G0286941 species:4468... 430 5.8e-37 1
SGD|S000004842 - symbol:RRP5 "RNA binding protein involve... 205 3.0e-30 4
ASPGD|ASPL0000042752 - symbol:rrp5 species:162425 "Emeric... 191 5.0e-22 4
FB|FBgn0039182 - symbol:CG5728 species:7227 "Drosophila m... 232 3.0e-13 2
TIGR_CMR|SO_2402 - symbol:SO_2402 "ribosomal protein S1" ... 190 3.7e-11 1
WB|WBGene00002850 - symbol:let-716 species:6239 "Caenorha... 188 4.0e-11 3
TIGR_CMR|CPS_2335 - symbol:CPS_2335 "ribosomal protein S1... 171 2.4e-09 2
TIGR_CMR|CBU_0528 - symbol:CBU_0528 "ribosomal protein S1... 142 5.7e-09 4
UNIPROTKB|P0AG67 - symbol:rpsA "30S ribosomal subunit pro... 171 6.2e-09 2
UNIPROTKB|Q9KQT3 - symbol:VC_1915 "30S ribosomal protein ... 162 3.8e-07 2
TIGR_CMR|VC_1915 - symbol:VC_1915 "ribosomal protein S1" ... 162 3.8e-07 2
TIGR_CMR|BA_1519 - symbol:BA_1519 "ribosomal protein S1" ... 146 4.1e-07 2
TIGR_CMR|CHY_1925 - symbol:CHY_1925 "hydroxymethylbutenyl... 153 4.9e-07 1
TIGR_CMR|SPO_0802 - symbol:SPO_0802 "ribosomal protein S1... 104 1.1e-06 3
TIGR_CMR|CJE_0972 - symbol:CJE_0972 "ribosomal protein S1... 146 2.2e-06 1
TIGR_CMR|GSU_2603 - symbol:GSU_2603 "ribosomal protein S1... 134 4.7e-05 1
TIGR_CMR|NSE_0408 - symbol:NSE_0408 "ribosomal protein S1... 127 0.00014 3
UNIPROTKB|O06147 - symbol:rpsA "30S ribosomal protein S1"... 130 0.00016 2
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 2009 (712.3 bits), Expect = 9.5e-208, P = 9.5e-208
Identities = 396/690 (57%), Positives = 507/690 (73%)
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHSDVKPGMV K KVI+VD+FGAIV
Sbjct: 433 FKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIV 492
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 576
QF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL I
Sbjct: 493 QFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPI 552
Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
LSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VV
Sbjct: 553 LSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVV 612
Query: 637 KCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSK 696
KCR+ S++ ++RI L+ +K + +K K
Sbjct: 613 KCRVTSAVHGTQRITLNDSIKLGSIVSGIIDTITSQAVIVRVK-----------SKSVVK 661
Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 756
GTI EHLADH E A ++ S+++PGYE D+LLVLD E +N+ LS+KYSLI A++LPSD
Sbjct: 662 GTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDF 721
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
+ + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSKA+D +AD+S++++VGQSVR+NI
Sbjct: 722 NQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANI 781
Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
+DVN E RITLSLKQS C+S DASF+QE+FL++EKI+ LQSS S+ WVE F IGS
Sbjct: 782 VDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGS 841
Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
+I+G + E ND GVVV+F+ ++V GFI H + GAT+ GSV+ A +LD+++AERLVDL
Sbjct: 842 LIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLVDL 901
Query: 937 SLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
SL+ ++ + +L VHQ V+A+VEIVKE +LVLS+PE+ ++
Sbjct: 902 SLRPELLNNLTKEVSNSSKKKRKRGISK--ELEVHQRVSAVVEIVKEQHLVLSIPEHGYT 959
Query: 997 IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXXXXXXX 1056
IGYASVSDYNTQK P KQF GQSV+A+V A+ + T+GRLLLLL ++
Sbjct: 960 IGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLTSGRLLLLLDSVSGTSETSRSKRA 1019
Query: 1057 XX-XXYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
+VGS+V AEITEIKP ELR+ FG F GRIHITEV + ++ + F+ F++GQ
Sbjct: 1020 KKKSSCEVGSVVHAEITEIKPFELRVNFGNSFRGRIHITEVLVNDASTSDEPFAKFRVGQ 1079
Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
+++AR++AK D+KK+ LWELS+KP+ML
Sbjct: 1080 SISARVVAKPCHTDIKKTQLWELSVKPAML 1109
Score = 1805 (640.5 bits), Expect = 4.3e-200, Sum P(4) = 4.3e-200
Identities = 368/643 (57%), Positives = 453/643 (70%)
Query: 15 DGPKFNKASKNQFKNSKKQINDAVEAQDLALXXXXXXXXFPRGGGHSLTQRERDEIHAEV 74
D K K K FK +K + EA L L FPRGGG SL+++ER++++ EV
Sbjct: 15 DSTKSFKPMKKPFKKTKDDVAARSEAMALQLEDVPD---FPRGGGTSLSKKEREKLYEEV 71
Query: 75 DAEFEAVERGLHXXXXXXXXXTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAG 134
DAEF+A ER ++++ +DDLG LFG G+ GK PRYANKIT KNIS G
Sbjct: 72 DAEFDADER---VSKKSKGGKSKKRIPSDLDDLGLLFGGGLHGKRPRYANKITTKNISPG 128
Query: 135 MKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILDNEIEANEDNLLPTIFHVGQLVS 194
MKL GVV EVN+KD+VI D IE +E+ LL IF VGQLV
Sbjct: 129 MKLLGVVTEVNQKDIVI-SLPGGLRGLVRASEVSDFTDRGIEDDENELLGDIFSVGQLVP 187
Query: 195 CIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIEDHGYILHFGL 254
CIVL+LDDDKKE GKRKIW ++ Q GMV +A VKSIEDHG ILHFGL
Sbjct: 188 CIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGL 247
Query: 255 PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 314
PS TGF+ ++ N +K G L+QGVV IDR RK+V+LSSDPD+V+KC+TKDL G+
Sbjct: 248 PSITGFIEISDDG-NQESGMKTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSGM 306
Query: 315 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
S DLL+PGMMV+ RVQS+LENG++ FLTYF GTVD+FHL+N +WK++YNQ+K VN
Sbjct: 307 SFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTVN 366
Query: 375 ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXIPSTPV 434
ARILF+DP+SRAVGLTL+P+++ N+APP HV GDI+D++K +PS P
Sbjct: 367 ARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKSGLLLE-LPSKPT 425
Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
TPAYV+ +KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHS
Sbjct: 426 PTPAYVS---------------FKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHS 470
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
DVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVL
Sbjct: 471 DVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVL 530
Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
G KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF P
Sbjct: 531 GCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVP 590
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
R ELGL+PG +P S++HVG+VVKCR+ S++ ++RI L+ +K
Sbjct: 591 RFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLNDSIK 633
Score = 116 (45.9 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 47/163 (28%), Positives = 74/163 (45%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
D+ P M V+G V S G + V+A L ++ + + +P K+F VG + RVL
Sbjct: 1341 DLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVL 1400
Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRL--ITHGWITKIEKHGCFVRF-YNGV 609
V+ SKRI VT KT+ SY + + G I ++E G F+ G+
Sbjct: 1401 NVEPLSKRIEVT-LKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGM 1459
Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
G S+L D + Y G+ V+ +I+ +RI+L
Sbjct: 1460 VGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISL 1502
Score = 101 (40.6 bits), Expect = 2.2e-197, Sum P(3) = 2.2e-197
Identities = 44/180 (24%), Positives = 83/180 (46%)
Query: 967 DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
D+GV V + K +++LS + +++ D K P+K+F G+ V V+
Sbjct: 1345 DMGVQGYVKNTMS--KGCFIILSRT-VEAKVRLSNLCD-TFVKEPEKEFPVGKLVTGRVL 1400
Query: 1027 ALPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLKFG-I 1085
+ S R+ + LK + + VG ++ I ++P L +
Sbjct: 1401 NVEPLSK--RIEVTLKTVNAGGRPKSESYDLKKLH-VGDMISGRIRRVEPFGLFIDIDQT 1457
Query: 1086 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
G G HI++++DD+ +EN+ + +K G++V A+I+ K D +K + L +K S L
Sbjct: 1458 GMVGLCHISQLSDDR---MENVQARYKAGESVRAKIL----KLDEEKKRI-SLGMKSSYL 1509
Score = 88 (36.0 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 31/118 (26%), Positives = 62/118 (52%)
Query: 233 GMVLTAYVKSIEDHGYILHF-GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR 291
G ++ ++ D G +++F + + GF+P++++ G + PG ++ VV I R
Sbjct: 840 GSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMG---GATLVPGSVVNAVVLDISRAE 896
Query: 292 KVVYLSSDPDTVSKCVTKDL---------KGISIDLLVPGMMVSTRVQSILENGVMLS 340
++V LS P+ ++ +TK++ +GIS +L V VS V+ + E ++LS
Sbjct: 897 RLVDLSLRPELLNN-LTKEVSNSSKKKRKRGISKELEVH-QRVSAVVEIVKEQHLVLS 952
Score = 87 (35.7 bits), Expect = 5.0e-198, Sum P(3) = 5.0e-198
Identities = 27/103 (26%), Positives = 47/103 (45%)
Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
D +H ++ G + + G F+ G + G S+ D + ++ Y G+SV
Sbjct: 1428 DLKKLHVGDMISGRIRRVEPFGLFIDIDQTG-MVGLCHISQLSDDRMENVQARYKAGESV 1486
Query: 813 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
R+ IL ++ E RI+L +K S + D Q L E+ +M
Sbjct: 1487 RAKILKLDEEKKRISLGMKSSYLMNGDDDKAQP--LSEDNTSM 1527
Score = 82 (33.9 bits), Expect = 3.5e-195, Sum P(3) = 3.5e-195
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 1064 GSLVQAEITEIKPLE--LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
G ++ I++I P LR++ G GR+H TE+ND S V + L F+ GQ V ++
Sbjct: 1236 GDILGGRISKILPGVGGLRVQLGPYVFGRVHFTEIND--SWVPDPL-DGFREGQFVKCKV 1292
Query: 1122 IAKSNKPDMKKSFLWELSIKPSM 1144
+ S+ K ++ ELS++ S+
Sbjct: 1293 LEISSSS--KGTWQIELSLRTSL 1313
Score = 80 (33.2 bits), Expect = 4.3e-200, Sum P(4) = 4.3e-200
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR-SKAVDGQRADLSKTYYVGQSVRSNIL 817
+ P+ V GYV N + GCF+ L R R S D + K + VG+ V +L
Sbjct: 1342 LSPDMGVQGYVKNTMSKGCFI-ILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVL 1400
Query: 818 DVNSETGRITLSLK 831
+V + RI ++LK
Sbjct: 1401 NVEPLSKRIEVTLK 1414
Score = 64 (27.6 bits), Expect = 5.0e-198, Sum P(3) = 5.0e-198
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
G++ GCF+ V+ S L EP + VG++V R+++ P S+RI
Sbjct: 1350 GYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSKRI 1409
Query: 651 NLS 653
++
Sbjct: 1410 EVT 1412
Score = 59 (25.8 bits), Expect = 4.3e-200, Sum P(4) = 4.3e-200
Identities = 15/77 (19%), Positives = 39/77 (50%)
Query: 874 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 926
+G +I G++ FG+ + ++ + + G QL+ +E+ G ++A IL
Sbjct: 1434 VGDMISGRIRRVEPFGLFIDIDQ-TGMVGLCHISQLSDDRMENVQARYKAGESVRAKILK 1492
Query: 927 VAKAERLVDLSLKTVFI 943
+ + ++ + L +K+ ++
Sbjct: 1493 LDEEKKRISLGMKSSYL 1509
Score = 44 (20.5 bits), Expect = 4.3e-200, Sum P(4) = 4.3e-200
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 625 EPSSMYHVGQVVKCRIM---SS------IPASRRINLSFMMKPTRVSED 664
+P + GQ VKC+++ SS I S R +L M +SED
Sbjct: 1277 DPLDGFREGQFVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHLSED 1325
Score = 42 (19.8 bits), Expect = 3.5e-195, Sum P(3) = 3.5e-195
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 1003 SDYN-TQKFPQKQFLNGQSVIATV 1025
S++N TQ+ Q +F GQ VI V
Sbjct: 1113 SEFNDTQESEQLEFAAGQCVIGYV 1136
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 834 (298.6 bits), Expect = 1.6e-87, Sum P(2) = 1.6e-87
Identities = 275/1008 (27%), Positives = 453/1008 (44%)
Query: 54 FPRGGGHSLTQRERDEIHA-EVDAEFE-AVERGLHXXXXXXXXXTERKANETVDDLGSLF 111
FPRGG L + E+ E D F+ + E G + K + ++ S+
Sbjct: 8 FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLK-IEKRKSI- 65
Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXIL 171
I K ++L+++ GM++ G V EV+E +LV+
Sbjct: 66 -KSIKEKF----EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYT 120
Query: 172 D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXX 224
NE A E+ L LP +F G LV C+V LD E GK+ +
Sbjct: 121 QKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKV 178
Query: 225 XXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
+ ++ GM+LT V S+EDHGY++ G+ FL E N G K G
Sbjct: 179 LSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQY 238
Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
L VV + VV LS + VS + + +++ L+PG++V +VQ + + G+ L
Sbjct: 239 LTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQL 298
Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
+FLT+F G VD HL+ P Y+ ++ V A IL V P +R V L+L P LH
Sbjct: 299 NFLTFFKGLVDFMHLE---PKK--MGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPG 353
Query: 400 APPSHV---KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
P + + ++G + D + + AY +S +++ + +
Sbjct: 354 RPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEA 410
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+K GS + RI+ + ++ LA L+ S + D+K G VVKG V+A+ FG +V
Sbjct: 411 FKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILV 470
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
+ +K L P H+++ + P KK+ G E+ RVL ++K++ +T KKTLV SKL
Sbjct: 471 KVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKL 530
Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
++++ Y A L THG I +++ +GC V+FYN VQG P+ EL +P ++++ GQ
Sbjct: 531 SLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQ 590
Query: 635 VVKCRIMSSIPASRRINLSF-MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKG 693
VVK ++S P+ R+ LSF ++ +R + G
Sbjct: 591 VVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTG 650
Query: 694 Y--------SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 745
+ +PT HL+DH + ++ ++ G ++L L ++LL K +L
Sbjct: 651 LEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPAL 710
Query: 746 INSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
+++ + Q P S I P ++ G+V I E G FV+F L+G +P++ D S
Sbjct: 711 VSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPS 770
Query: 804 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQSSK 860
+ + GQ+V + + +V+ R+ LSL+ S CS S SF+ LEE +
Sbjct: 771 EHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMS 830
Query: 861 HNGSEL-KWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGS 918
+ S L + + G V++ VHE D VV S + D+ + + AG VE G
Sbjct: 831 NQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQ 890
Query: 919 VIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIV 978
+ +L V + V +SL ++R HQ IV
Sbjct: 891 KKKVVVLHVDMLKLEVHVSLHQDLVNRKTRKLRKSSR---------------HQ---GIV 932
Query: 979 EIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 1025
+ ++E++ V SL E H + ++ +S N T F ++ GQ V T+
Sbjct: 933 QHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980
Score = 85 (35.0 bits), Expect = 1.6e-87, Sum P(2) = 1.6e-87
Identities = 30/96 (31%), Positives = 46/96 (47%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+G V I +K + + GF G IH + + DD V + + K G+ VTAR+I
Sbjct: 1046 IGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDDVP-VGTSPTTTLKAGKKVTARVI 1104
Query: 1123 A----KSNK--PDMKKSF---LWELSIKPSMLTGKW 1149
K++K P F + ELS++PS L G +
Sbjct: 1105 GGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSY 1140
Score = 45 (20.9 bits), Expect = 2.6e-83, Sum P(2) = 2.6e-83
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1005 YNTQKFPQKQFLNGQSVIATVM 1026
+ K P K+F GQ++ ATV+
Sbjct: 1198 FKVLKHPDKKFQVGQAIEATVV 1219
>RGD|1304933 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA;ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 RGD:1304933 GO:GO:0005829
GO:GO:0005634 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:22984 KO:K14792
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 IPI:IPI00870468
RefSeq:NP_001101074.2 UniGene:Rn.136636 ProteinModelPortal:D3ZNI3
Ensembl:ENSRNOT00000027512 GeneID:309458 KEGG:rno:309458
NextBio:660838 ArrayExpress:D3ZNI3 Uniprot:D3ZNI3
Length = 1876
Score = 830 (297.2 bits), Expect = 2.1e-87, Sum P(2) = 2.1e-87
Identities = 258/934 (27%), Positives = 429/934 (45%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
++L+++ GM++ G V EVNE +LV+ NE A E+ L
Sbjct: 75 LSLESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLE 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V LD E GK+ + E ++ GM+LT
Sbjct: 135 DLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSAEALRPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FL E N G K G L VV + V
Sbjct: 193 TVSSLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS + VS + + +++ L+PG++V +VQ + + G+ L+FLT+FTG VD H
Sbjct: 253 VSLSVEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFFTGLVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
L+ P Y+ + V A IL V P +R V L+L P LH P + + ++G +
Sbjct: 313 LE---PKK--MGSYSSKQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + + + AY +S +++ + + +K GS R RI+ +
Sbjct: 368 LDDASVEGFFEKAGAIFRLRDGVL---AYARLSHLSDSKKAFSAEAFKLGSTHRCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S + D+K G +VKGKV+A+ FG +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ + P KKF G E+ RVL ++K++ +T KKTLV SKL ++ Y +A L
Sbjct: 485 LADIMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEDAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG I +++ +GC V+FYN VQG P+ EL +P +++ GQVVK +++ P+
Sbjct: 545 THGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKE 604
Query: 649 RINLSF-MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIP------- 700
R+ LSF ++ + ++ G +P
Sbjct: 605 RMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNIPAFL 664
Query: 701 -TEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDAS 757
T HL+DH+ + ++ ++ G ++L L ++LL K +L+++ + Q P S
Sbjct: 665 PTPHLSDHVANGPLLHHWLQTGDTLHRVLCLSQSEKHILLCRKPALVSTVEGGQDPKSLS 724
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
I P ++ G+V +I + G FV+F L+G +P++ D S+ + GQ+V + +
Sbjct: 725 EIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 784
Query: 818 DVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFI 873
+V+ R+ LSL+ S CS S SF+ LEE + + S L + +
Sbjct: 785 NVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMT 844
Query: 874 IGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
G V++ V E + G VV D+ + + AG +E G + +L V +
Sbjct: 845 PGMVLDAMVQEVLENGSVVFGGGPVPDLILRASRYHRAGQELEPGQKKKVVVLHVDALKL 904
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R +A HQ IV+ ++E++ V SL E
Sbjct: 905 EVHVSLHQDLVNR--KARKLRKNSR-------------HQ---GIVQHLEESFAVASLVE 946
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 1025
H + ++ +S N T F ++ GQ V T+
Sbjct: 947 TGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980
Score = 88 (36.0 bits), Expect = 2.1e-87, Sum P(2) = 2.1e-87
Identities = 30/96 (31%), Positives = 45/96 (46%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+G V I +K + GF G IH++ + DD V + K G+ VTAR+I
Sbjct: 1040 IGDKVTGTIKSVKATHAVVTLDDGFIGCIHVSRILDDVPEGVSPT-TTLKAGKKVTARVI 1098
Query: 1123 A----KSNK--PDMKKSF---LWELSIKPSMLTGKW 1149
K++K P F + ELS++PS L G +
Sbjct: 1099 GGRDVKTSKFLPISHPRFVLTILELSVRPSELKGDY 1134
Score = 57 (25.1 bits), Expect = 2.4e-86, Sum P(3) = 2.4e-86
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G L++ + I P + + G G + + V+ S E G+ VTAR++
Sbjct: 1329 GQLLRGYVKSILPSSVVIGLGPSVMGLVKHSHVSQCVSREKELYDKCLPEGKLVTARVLC 1388
Query: 1124 KSNKPDMKKSFLWELSIKPSMLTGK 1148
+ P KK+ + ELS+ PS TGK
Sbjct: 1389 VN--P--KKNLI-ELSLLPSD-TGK 1407
Score = 50 (22.7 bits), Expect = 2.2e-83, Sum P(2) = 2.2e-83
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGI--GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
Y G V + + ++ L+ I GRI + + V+++ F+IGQ +
Sbjct: 1151 YQAGQTVTCFLKKYNVMKKWLEVDIEPDIRGRIPLL-LTSLSFKVLKHPDKKFQIGQAIK 1209
Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSML 1145
A ++ PD+ ++FL I P L
Sbjct: 1210 ATVVG----PDIPRAFLCLSLIGPYKL 1232
Score = 47 (21.6 bits), Expect = 2.4e-86, Sum P(3) = 2.4e-86
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 972 QTVNAIVEI--VKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVM 1026
QTV ++ V + +L + + P+ I S + K P K+F GQ++ ATV+
Sbjct: 1155 QTVTCFLKKYNVMKKWLEVDIEPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQAIKATVV 1213
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 880 (314.8 bits), Expect = 8.4e-87, P = 8.4e-87
Identities = 288/1049 (27%), Positives = 473/1049 (45%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
+ ++++ GM++ G V EVNE +L I + NE A E+ L
Sbjct: 75 LNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQ 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V LD K K+ + ET++ GM+LT
Sbjct: 135 DLVGLPELFSPGMLVRCVVSSLDTTKGS--KKNVMLSLNPKNVNRVLSAETLKPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L ++ + +R V
Sbjct: 193 TVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS VS + + + +++ L+PG++V +VQ + G+ L FL++F+G VD H
Sbjct: 253 VTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
L T + N ++V A +L V P +RAV L+L P L P + + ++G +
Sbjct: 313 LDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + T AY + ++ + + +K G+ + RI+ +
Sbjct: 368 LDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S E + D+KPG +VKGKV+ + G +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ I P KK+ VG E+ RVL K+K++ +T KKTLV+SKL ++ Y +A L
Sbjct: 485 LADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG PR EL + +P S+++ GQVVK +++ P+
Sbjct: 545 THGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKE 604
Query: 649 RINLSFMM--KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX-----XIAKGYSKGTIPT 701
R+ LSF + P + E + G +PT
Sbjct: 605 RMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFLPT 664
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P S I
Sbjct: 665 AHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEI 724
Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
HP ++ G+V NI + G FV+F L+G AP++ D S + GQ+V + + +V
Sbjct: 725 HPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNV 784
Query: 820 NSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIG 875
+ E R+ LSL+ S C+ D S + LEE+ + + S L + + G
Sbjct: 785 DEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 844
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 932
++ +V E + G V+ F E V G + + + AG +E G +A IL+V +
Sbjct: 845 MALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKL 902
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R DL AIV+ ++E++ V SL E
Sbjct: 903 EVHVSLCHDLVNR------------KAKKLKKGSDL------QAIVQHLEESFAVASLVE 944
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXX 1047
H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 945 TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVT-GLLLAIEGPAAKRTMRQ 1003
Query: 1048 XXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
D +G +V + IKP + + G G IH
Sbjct: 1004 TRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHA 1063
Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+ + DD V + + K+G+ VTAR+I
Sbjct: 1064 SHILDDVP-VGTSPTAKLKVGKKVTARVI 1091
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 879 (314.5 bits), Expect = 1.1e-86, P = 1.1e-86
Identities = 288/1049 (27%), Positives = 473/1049 (45%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
+ ++++ GM++ G V EVNE +L I + NE A E+ L
Sbjct: 75 LNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQ 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V LD K K+ + ET++ GM+LT
Sbjct: 135 DLVGLPELFSPGMLVRCVVSSLDTTKGS--KKNVMLSLNPKNVNRVLSAETLKPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L ++ + +R V
Sbjct: 193 TVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS VS + + + +++ L+PG++V +VQ + G+ L FL++F+G VD H
Sbjct: 253 VTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
L T + N ++V A +L V P +RAV L+L P L P + + ++G +
Sbjct: 313 LDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + T AY + ++ + + +K G+ + RI+ +
Sbjct: 368 LDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S E + D+KPG +VKGKV+ + G +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ I P KK+ VG E+ RVL K+K++ +T KKTLV+SKL ++ Y +A L
Sbjct: 485 LADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG PR EL + +P S+++ GQVVK +++ P+
Sbjct: 545 THGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKE 604
Query: 649 RINLSFMM--KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX-----XIAKGYSKGTIPT 701
R+ LSF + P + E + G +PT
Sbjct: 605 RMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPT 664
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P S I
Sbjct: 665 AHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEI 724
Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
HP ++ G+V NI + G FV+F L+G AP++ D S + GQ+V + + +V
Sbjct: 725 HPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNV 784
Query: 820 NSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIG 875
+ E R+ LSL+ S C+ D S + LEE+ + + S L + + G
Sbjct: 785 DEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 844
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 932
++ +V E + G V+ F E V G + + + AG +E G +A IL+V +
Sbjct: 845 MALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKL 902
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R DL AIV+ ++E++ V SL E
Sbjct: 903 EVHVSLCHDLVNR------------KAKKLKKGSDL------QAIVQHLEESFAVASLVE 944
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXX 1047
H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 945 TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVT-GLLLAIEGPAAKRTMRQ 1003
Query: 1048 XXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
D +G +V + IKP + + G G IH
Sbjct: 1004 TRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHA 1063
Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+ + DD V + + K+G+ VTAR+I
Sbjct: 1064 SHILDDVP-VGTSPTAKLKVGKKVTARVI 1091
>UNIPROTKB|Q14690 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
EMBL:CH471066 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL591408
GO:GO:0006364 EMBL:AL139339 InterPro:IPR022967 SMART:SM00316
CTD:22984 eggNOG:COG0539 HOGENOM:HOG000088607 HOVERGEN:HBG108419
KO:K14792 EMBL:D80007 EMBL:AL603983 EMBL:BC049838 EMBL:BC064486
EMBL:BC080560 EMBL:BC111040 EMBL:AY007124 IPI:IPI00400922
RefSeq:NP_055791.1 UniGene:Hs.239499 PDB:1WI5 PDBsum:1WI5
ProteinModelPortal:Q14690 SMR:Q14690 IntAct:Q14690
MINT:MINT-1388150 STRING:Q14690 PhosphoSite:Q14690 DMDM:145559523
SWISS-2DPAGE:Q14690 PaxDb:Q14690 PRIDE:Q14690 DNASU:22984
Ensembl:ENST00000369797 GeneID:22984 KEGG:hsa:22984 UCSC:uc001kwy.1
GeneCards:GC10P105156 H-InvDB:HIX0009176 HGNC:HGNC:13408
HPA:CAB026472 HPA:HPA017924 MIM:612333 neXtProt:NX_Q14690
PharmGKB:PA134909758 InParanoid:Q14690 OMA:LHLADIY
OrthoDB:EOG4XKV63 PhylomeDB:Q14690 ChiTaRS:PDCD11
EvolutionaryTrace:Q14690 GenomeRNAi:22984 NextBio:43819
ArrayExpress:Q14690 Bgee:Q14690 CleanEx:HS_PDCD11
Genevestigator:Q14690 GermOnline:ENSG00000148843 Uniprot:Q14690
Length = 1871
Score = 838 (300.0 bits), Expect = 6.2e-84, Sum P(2) = 6.2e-84
Identities = 278/1050 (26%), Positives = 471/1050 (44%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
++++++ GM++ G V EVNE +LVI NE E L
Sbjct: 75 LSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLK 134
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
LP +F G LV C+V L + GK+ + E ++ GM+LT
Sbjct: 135 DLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTG 192
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L +V + V
Sbjct: 193 TVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGV 252
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS VS + + + +++ L+PG++V +VQ + G+ L+FLT+FTG VD H
Sbjct: 253 VSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMH 312
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDI 410
L T + N + V A IL V P +R V L+L P L P + + +G +
Sbjct: 313 LDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAV 367
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + + AY +S +++ + + +K G+ + RI+ +
Sbjct: 368 LDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDY 424
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ LA L+ S E + D++PG VVKG V+ + S+G +V+ ++ L P H
Sbjct: 425 SQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMH 484
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ + P KK+ +G E+ RVL ++K++ +T KKTL++SKL +++ YA+A L
Sbjct: 485 LADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQ 544
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG P+ EL + +P +++ GQVVK +++ P+
Sbjct: 545 THGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKE 604
Query: 649 RINLSFMM--------KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYS-KGTI 699
R+ LSF + +P S+ ++ + +
Sbjct: 605 RMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIRAFL 664
Query: 700 PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDAS 757
PT HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P + S
Sbjct: 665 PTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFS 724
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
IHP ++ G+V +I + G F++F L+G AP++ D S + GQ+V + +
Sbjct: 725 EIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVT 784
Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGF 872
+V+ E R+ LSL+ S C D + + LL + + LQ S + ++ +
Sbjct: 785 NVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEM 843
Query: 873 IIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
G ++ V E D VV S D+ + + AG VESG + IL+V +
Sbjct: 844 TPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLK 903
Query: 932 RLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLP 991
V +SL ++R +A HQ AIV+ +++++ + SL
Sbjct: 904 LEVHVSLHQDLVNR--KARKLRKGSE-------------HQ---AIVQHLEKSFAIASLV 945
Query: 992 EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXX 1046
E H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 946 ETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT-GLLLAVEGPAAKRTMR 1004
Query: 1047 XXXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIH 1092
D +G +V + IKP + + G G IH
Sbjct: 1005 PTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIH 1064
Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+ + DD + K+G+TVTAR+I
Sbjct: 1065 ASHILDDVPEGTSPT-TKLKVGKTVTARVI 1093
Score = 47 (21.6 bits), Expect = 6.2e-84, Sum P(2) = 6.2e-84
Identities = 18/87 (20%), Positives = 44/87 (50%)
Query: 1064 GSLVQAEITEIKPLELRLKFG---IGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
G L++ + I+P + + G +G H+++ + K + + G+ +TAR
Sbjct: 1324 GQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSPSKKALYNK---HLPEGKLLTAR 1380
Query: 1121 IIAKSNKPDMKK-SFLWELSIKPSMLT 1146
++ +++ ++ + SFL + KP +L+
Sbjct: 1381 VLRLNHQKNLVELSFLPGDTGKPDVLS 1407
>UNIPROTKB|F1PLK8 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
Uniprot:F1PLK8
Length = 1870
Score = 844 (302.2 bits), Expect = 5.9e-83, P = 5.9e-83
Identities = 278/1049 (26%), Positives = 473/1049 (45%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL- 182
++++++ GM++ G V EV+E +LVI + NE A E+ L
Sbjct: 72 LSVESLREGMRILGCVKEVHELELVISLPNGLQGFVQATEICDAYTEQLNEQVAQEEPLK 131
Query: 183 ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
L +F G LV C+V + E GK+ + E ++ GM+LT
Sbjct: 132 DLVCLSELFSPGMLVRCVVSSVGIT--ESGKKSVKLSLNPKNVNEVLSAEALKPGMLLTG 189
Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
V S+EDHGY++ G+ FLP E N G +K G L ++ + V
Sbjct: 190 TVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKGNGGV 249
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS P VS + + + +++ L+PG++V +VQ + G+ L+FLT+F+G VD H
Sbjct: 250 VGLSIGPSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLTFFSGLVDFMH 309
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDI 410
L T + N + V A +L V P +RAV L+L P L + + +G +
Sbjct: 310 LDPKKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPIFLQPGRSLTRLSCQHLGAV 364
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
D + + AY +S +++ + + YK G+ + RI+ +
Sbjct: 365 LDDVPVQSFFSKAGATFRLKDGAL---AYARLSHLSDSKNIFNAEAYKPGNIHKCRIIDY 421
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ + L+ S E F + D+KPG +VKG V+ ++ +G +V+ ++ L P H
Sbjct: 422 SQMDEMVLLSLRPSIIESQYFRYHDIKPGALVKGTVLTIEPYGMLVKVGEQIRGLIPPMH 481
Query: 531 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ I P KK+ +G E+ RVL ++K++ +T KKTL++SKL ++ YA+A L
Sbjct: 482 LADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGLQ 541
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG+I +++ +GC V+FYN VQG P+ EL + +P +++ GQVVK +++ P+
Sbjct: 542 THGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVVVLNCEPSKE 601
Query: 649 RINLSFMM--KPTRV-----SEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPT 701
R+ LSF + P + + + +PT
Sbjct: 602 RMLLSFKLLGDPKKEHTGHSQKKRRAISVGQLVDVKVLEKTKDGLEVSVLPHNIPAFLPT 661
Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P + + I
Sbjct: 662 PHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFAEI 721
Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
HP ++ G+V +I + G FV+F L+G AP++ D S + GQ+V + + +V
Sbjct: 722 HPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNV 781
Query: 820 NSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIG 875
+ E R+ LSL+ S C D S + LEE+ + + S L + + G
Sbjct: 782 DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 841
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 932
V++ +V E + G VV F E V G + + + AG VE G + IL+V +
Sbjct: 842 MVLDLEVQEVLEDGSVV-FSE-GPVSGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKL 899
Query: 933 LVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPE 992
V +SL ++R + HQ AIV+ ++E++ V SL E
Sbjct: 900 EVHVSLCHDLVNRKPKKLKKGSE---------------HQ---AIVQHLEESFAVASLVE 941
Query: 993 YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXX 1051
H ++ S N T +F ++ GQ V T+ T G LL +
Sbjct: 942 TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGMT-GFLLAVEGPAAKRTVRQ 1000
Query: 1052 XXXXXXXXXYD------------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
D +G +V + IKP + + G G IH
Sbjct: 1001 TRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHA 1060
Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+ + DD V + + K+G+TVTAR+I
Sbjct: 1061 SHILDDVP-VGTSPTAKLKVGRTVTARVI 1088
>UNIPROTKB|F1S842 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
ArrayExpress:F1S842 Uniprot:F1S842
Length = 1859
Score = 824 (295.1 bits), Expect = 7.9e-81, P = 7.9e-81
Identities = 296/1124 (26%), Positives = 496/1124 (44%)
Query: 54 FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHXXXXXXXXXTERKANETVDDLGSLFGD 113
FPRGG + + E+ + V+ + L +K+ + + L D
Sbjct: 8 FPRGGTRKIRKSEKT-LQQSVEQD------NLFDISTEEESTKRKKSQKEPATIKKLKTD 60
Query: 114 GI-SGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXIL 171
S K R +I +++ GM++ G V EVNE +LVI
Sbjct: 61 KRESSKFVREKFEILNEESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYT 120
Query: 172 D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXX 224
NE A E+ L LP +F G LV C+V L K GK+ +
Sbjct: 121 KKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLGITKS--GKKDVKLSLNPKNVNKV 178
Query: 225 XXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
E ++ GM+LT V S+EDHGY++ G+ FLP E N +K G
Sbjct: 179 LNPEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKDAKLKVGQY 238
Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
L +++ + + VV LS VS + + + +++ L+PG++V +VQ + G+ L
Sbjct: 239 LNCIIQEVKGSGGVVSLSIGNSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTL 298
Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
FL++FTG VD HL T + N + V A +L V P +R V L+L P L
Sbjct: 299 KFLSFFTGLVDFMHLDPKKAGTYFSN-----QPVRACVLCVHPRTRDVRLSLRPTFLQPG 353
Query: 400 APPSHV---KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
P + + ++G + + + T AY + ++ + +
Sbjct: 354 RPLTGLSCQQLGAVLEDVPVQGFFGNAGATFRLKD---GTLAYARFNHLSNSKKAFKPET 410
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+K G+ + RI+ + ++ + L+ S E + D+KPG +VKGKV+ + +G +V
Sbjct: 411 FKPGNIHKCRIIDYSRMDEMVLLSLRTSVIEAQFLRYHDIKPGALVKGKVLTIKPYGMLV 470
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
++ L P H+++ + P KK+ VG E+ RVL ++KR+ +T KKTLV+SKL
Sbjct: 471 NMGREIRGLVPPMHLADILMKNPEKKYHVGDEVKCRVLLCDPEAKRLMMTLKKTLVESKL 530
Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
++ YA+A L THG+I +++ +GC V+FYN VQG P+ EL + +P S Q
Sbjct: 531 PAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPESGVVSCQ 590
Query: 635 VVKCRIMSSIPASRRINLSFMMK--PTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX---- 688
VVK +++ P+ ++ LSF + P + SE
Sbjct: 591 VVKVVVLNCEPSKEKMLLSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLE 650
Query: 689 -XIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVL-DNESSNLLLSAKYSLI 746
+ + +PT HL+DH+ ++ ++ ++ G ++L L + E N LL K +L+
Sbjct: 651 VAVLPHNIRAFLPTPHLSDHVANSPLLYHWLQAGDVLHRVLCLSETEERNELLCRKPALV 710
Query: 747 NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
++ + Q P S IHP ++ G+V +I + G F++F L+G AP++ D S
Sbjct: 711 SAVEGGQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSD 770
Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKH 861
+ GQ+V + + +V+ E R+ LSL+ S C+ D S + LEE+ + +
Sbjct: 771 HFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDQATTSLLLLSQCLEEQQGVRSLMSN 830
Query: 862 NGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESG 917
S L + + G V++ +V E + G V+ F E V G + + + AG VESG
Sbjct: 831 RDSVLIQTLAEMTPGMVLDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQEVESG 888
Query: 918 SVIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAI 977
+ IL+V + V +SL+ ++R + G +Q A+
Sbjct: 889 QKKKVVILNVDMLKLEVHVSLRRDLVNRRTKKLRKG---------------GEYQ---AV 930
Query: 978 VEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGR 1036
V+ ++E + V SL E H ++ S N T +F ++ GQ V T+ T G
Sbjct: 931 VQHLEETFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLSTTEPGVT-GL 989
Query: 1037 LLLL----LKAIXXXXXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLE 1078
LL + K D +G +V + IKP
Sbjct: 990 LLAVEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKSIKPTH 1049
Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+ + G G IH + + DD V + + K+G+ VTAR+I
Sbjct: 1050 VVVTLEDGIVGCIHASHILDDVP-VGTSPTTKLKVGKKVTARVI 1092
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 824 (295.1 bits), Expect = 8.1e-81, P = 8.1e-81
Identities = 294/1123 (26%), Positives = 494/1123 (43%)
Query: 54 FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHXXXXXXXXXTERKANETVDDLGSLFGD 113
FPRGG + + E+ + V+ + L +K+ + + L D
Sbjct: 8 FPRGGTRKIRKSEKT-LQQSVEQD------NLFDISTEEESTKRKKSQKEPATIKKLKTD 60
Query: 114 GI-SGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXIL 171
S K R +I +++ GM++ G V EVNE +LVI
Sbjct: 61 KRESSKFVREKFEILNEESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYT 120
Query: 172 D--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXX 224
NE A E+ L LP +F G LV C+V L K GK+ +
Sbjct: 121 KKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLGITKS--GKKDVKLSLNPKNVNKV 178
Query: 225 XXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLL 279
E ++ GM+LT V S+EDHGY++ G+ FLP E N +K G
Sbjct: 179 LNPEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKDAKLKVGQY 238
Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
L +++ + + VV LS VS + + + +++ L+PG++V +VQ + G+ L
Sbjct: 239 LNCIIQEVKGSGGVVSLSIGNSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTL 298
Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
FL++FTG VD HL T + N + V A +L V P +R V L+L P L
Sbjct: 299 KFLSFFTGLVDFMHLDPKKAGTYFSN-----QPVRACVLCVHPRTRDVRLSLRPTFLQPG 353
Query: 400 APPSHV---KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
P + + ++G + + + T AY + ++ + +
Sbjct: 354 RPLTGLSCQQLGAVLEDVPVQGFFGNAGATFRLKD---GTLAYARFNHLSNSKKAFKPET 410
Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
+K G+ + RI+ + ++ + L+ S E + D+KPG +VKGKV+ + +G +V
Sbjct: 411 FKPGNIHKCRIIDYSRMDEMVLLSLRTSVIEAQFLRYHDIKPGALVKGKVLTIKPYGMLV 470
Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
++ L P H+++ + P KK+ VG E+ RVL ++KR+ +T KKTLV+SKL
Sbjct: 471 NMGREIRGLVPPMHLADILMKNPEKKYHVGDEVKCRVLLCDPEAKRLMMTLKKTLVESKL 530
Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
++ YA+A L THG+I +++ +GC V+FYN VQG P+ EL + +P S Q
Sbjct: 531 PAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPESGVVSCQ 590
Query: 635 VVKCRIMSSIPASRRINLSFMMK--PTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX---- 688
VVK +++ P+ ++ LSF + P + SE
Sbjct: 591 VVKVVVLNCEPSKEKMLLSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLE 650
Query: 689 -XIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 747
+ + +PT HL+DH+ ++ ++ ++ G ++L L +LL K +L++
Sbjct: 651 VAVLPHNIRAFLPTPHLSDHVANSPLLYHWLQAGDVLHRVLCLSETEGRVLLCRKPALVS 710
Query: 748 SAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
+ + Q P S IHP ++ G+V +I + G F++F L+G AP++ D S
Sbjct: 711 AVEGGQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDH 770
Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHN 862
+ GQ+V + + +V+ E R+ LSL+ S C+ D S + LEE+ + +
Sbjct: 771 FVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDQATTSLLLLSQCLEEQQGVRSLMSNR 830
Query: 863 GSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGS 918
S L + + G V++ +V E + G V+ F E V G + + + AG VESG
Sbjct: 831 DSVLIQTLAEMTPGMVLDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQEVESGQ 888
Query: 919 VIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIV 978
+ IL+V + V +SL+ ++R + G +Q A+V
Sbjct: 889 KKKVVILNVDMLKLEVHVSLRRDLVNRRTKKLRKG---------------GEYQ---AVV 930
Query: 979 EIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
+ ++E + V SL E H ++ S N T +F ++ GQ V T+ T G L
Sbjct: 931 QHLEETFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLSTTEPGVT-GLL 989
Query: 1038 LLL----LKAIXXXXXXXXXXXXXXXXYD--------------VGSLVQAEITEIKPLEL 1079
L + K D +G +V + IKP +
Sbjct: 990 LAVEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKSIKPTHV 1049
Query: 1080 RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+ G G IH + + DD V + + K+G+ VTAR+I
Sbjct: 1050 VVTLEDGIVGCIHASHILDDVP-VGTSPTTKLKVGKKVTARVI 1091
>UNIPROTKB|F1P3T9 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 EMBL:AADN02030831
IPI:IPI00603042 Ensembl:ENSGALT00000013446 Uniprot:F1P3T9
Length = 1841
Score = 625 (225.1 bits), Expect = 2.3e-76, Sum P(2) = 2.3e-76
Identities = 165/555 (29%), Positives = 269/555 (48%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXX---XXXXXXXXXILDNEI---EANE 179
+T+K + GM G + EV +LVI +L ++ E E
Sbjct: 81 LTIKELCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAYSELLSKQVTQGELLE 140
Query: 180 D-NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 238
D N L ++ G LV C+V ++ K G+R I + GM+L+
Sbjct: 141 DLNSLSDLYSPGMLVRCVVTSVE--KSADGRRSIKLSINPKSVNKGLSASALTSGMLLSG 198
Query: 239 YVKSIEDHGYILHFGLPSFTGFLP----RNNL-AENSGIDVKPGLLLQGVVRSIDRTRKV 293
+V S+EDHGY++ G+ FLP +N + A G D+K G L V+ + +V
Sbjct: 199 FVSSVEDHGYLIDIGVSGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCVIEEVKNEGRV 258
Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
V LS+D V+ + + + ++ L+PG++V +VQ + GV L+FL+ FTG VD H
Sbjct: 259 VRLSADRSEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMH 318
Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
+ +TN Y+ ++ V A IL PTS+ V LTL LH P+ + ++G +
Sbjct: 319 VDPE-KSTN----YSPNQMVKACILSTHPTSKVVRLTLRQAFLHPGGSPNQLSNDRIGAV 373
Query: 411 YDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
++S + + A+ +++ +K G + RI+ +
Sbjct: 374 VEESTVKAFYKQFGAVFQLDDGML---AFARPKHLSKTRKSFKPAAFKAGCKHKCRIIDY 430
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
++ + LK E + D+ G V++GKV+++ G V+ G+K L P H
Sbjct: 431 SLMDEMCIVSLKHQIIEARFLRYEDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMH 490
Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
+++ + +P KK+ VG E+ RVL K++ +T KKTLV+SKL +LSSY +A LI
Sbjct: 491 LADVILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLVQSKLPVLSSYEDAEPGLI 550
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
THG++ + GC V+FYN V+G P++EL +P P ++H GQVVK ++ P
Sbjct: 551 THGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQE 610
Query: 649 RINLSFMMKPTRVSE 663
R+ LSF + V E
Sbjct: 611 RLLLSFRLSSRTVPE 625
Score = 233 (87.1 bits), Expect = 2.3e-76, Sum P(2) = 2.3e-76
Identities = 110/484 (22%), Positives = 201/484 (41%)
Query: 699 IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDA 756
+PT HL+D + ++ ++ ++ G +++ L ++ ++L K ++I++ Q Q+
Sbjct: 673 LPTVHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVRSF 732
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
S I P ++ GYV ++ G FV F +TG AP+ D D + VGQ+V + +
Sbjct: 733 SEIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKV 792
Query: 817 LDVNSETGRITLSLKQSCCSSTDA-----SFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 871
+ ++ E R+ LSLK S CSS D+ S + ++F E+I L + + V
Sbjct: 793 MSIDEEKQRVLLSLKVSECSSGDSAAESFSLLNQYFKEVEEIRNLLRRREESGLARCVCE 852
Query: 872 FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVA 928
+ G ++ V + + G + F V G T + L G V G + +L V
Sbjct: 853 LVPGKELQLVVQDVMEDGSAL-FSGGC-VRGLTVTATRYHLGGKNVIPGEKAKGLVLHVD 910
Query: 929 KAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVL 988
V +SL+ + + + H AIV+ + E + ++
Sbjct: 911 AITSKVYVSLREELLKKRAKQRLTKNSQ--------------HP---AIVQHIAEEFAIV 953
Query: 989 SLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL------ 1041
SL + S +N T +F ++ GQ + AT + + ++ G LL +
Sbjct: 954 SLLDSGRLAAIPIASHFNDTFRFDSEKLKVGQRIYAT-LKMVKANDLGVLLAVQDPAKKN 1012
Query: 1042 -----KAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
+ +G +V + +KP + + G IH + +
Sbjct: 1013 AFVRDRKESETALEETLAAAVKHSLSLGDIVTGTVKSVKPTHVTVAIDDKLTGSIHASRI 1072
Query: 1097 NDDKSNVVENLFSNF--KIGQTVTARIIAKSN----------KPDMKKSFLWELSIKPSM 1144
D+ V + F + K GQ VTAR+I + P +S + ELSI+PS
Sbjct: 1073 LDE---VPIHSFPTYTLKAGQKVTARVIGGRDVNTHRYLPITHPHFTRS-VPELSIRPSE 1128
Query: 1145 LTGK 1148
+ G+
Sbjct: 1129 IEGE 1132
Score = 138 (53.6 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 61/255 (23%), Positives = 110/255 (43%)
Query: 696 KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPS 754
KG +P+ HLAD + K + G E ++L + L L+ K +L+ S + S
Sbjct: 483 KGLVPSMHLADVILKQPEKKYNV--GDEVRCRVLECNPAEKKLFLTLKKTLVQSKLPVLS 540
Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
P + HG+V E GC V+F + G P+++ + K ++ GQ V+
Sbjct: 541 SYEDAEPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKV 600
Query: 815 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874
+L + R+ LS + S S T E + +K Q K+ E+ VE ++
Sbjct: 601 MVLKCEPQQERLLLSFRLS--SRTVPEGRSE--CIPKK---KQQVKYQIGEMVDVE--VL 651
Query: 875 GSVIEG-KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 933
G +V D G V+++ + F+ + +L ++ G V+ + K +R+
Sbjct: 652 KKNENGLEVSILEDGGNVIAWLPTVHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRI 711
Query: 934 VDLSLKTVFIDRFRE 948
+ L K+ I +E
Sbjct: 712 I-LCRKSAVISAVQE 725
Score = 117 (46.2 bits), Expect = 7.4e-06, Sum P(4) = 7.4e-06
Identities = 82/360 (22%), Positives = 146/360 (40%)
Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
G ++ +V S+ G+ + G V HL + K YN +V R+L +
Sbjct: 459 GDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADVILKQPEKK-YNVGDEVRCRVLECN 517
Query: 382 PTSRAVGLTLNPYLLHNRAP---------PSHVKVGDIYDQS------KXXXXXXXXXXX 426
P + + LTL L+ ++ P P + G + K
Sbjct: 518 PAEKKLFLTLKKTLVQSKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKFYNDVKGLVPK 577
Query: 427 XXIPSTPVSTPAYVTIS-DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA 485
+ S P+S P V V + V K E + + R+ +L FR L++ +
Sbjct: 578 NELSSEPISCPDKVFHDGQVVKVMVLKCEPQQE-----RL-LLSFR----LSSRTVPEGR 627
Query: 486 FEGLVFTHSDVKP--GMVVKGKVIAVDSFG---AIVQFPGGVKALCPLPHMSEFEIVKPG 540
E + VK G +V +V+ + G +I++ G V A P H+S+F V
Sbjct: 628 SECIPKKKQQVKYQIGEMVDVEVLKKNENGLEVSILEDGGNVIAWLPTVHLSDF--VANS 685
Query: 541 KKF---KVGAELVFRVLGVKSK--RITVTHKKTLVKS--KLAILSSYAEATDRLITHGWI 593
K +++ RV+ + K RI + K ++ + + ++ S++E ++ G++
Sbjct: 686 KLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVRSFSEIQPGVLLIGYV 745
Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
K+ G FV F GV G AP+ + + + VGQ V ++MS +R+ LS
Sbjct: 746 RKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLS 805
Score = 110 (43.8 bits), Expect = 3.7e-05, Sum P(4) = 3.7e-05
Identities = 30/122 (24%), Positives = 63/122 (51%)
Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 537
+ ++ A E +V + S+++PG+++ G V V FG V+FP GV L P MS+ +
Sbjct: 717 SAVISAVQEEQVVRSFSEIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVT 776
Query: 538 KPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-ITHGWITKI 596
F VG ++ +V+ + ++ ++ L+ K++ SS A + + + + ++
Sbjct: 777 DTKDHFVVGQTVIAKVMSIDEEK-----QRVLLSLKVSECSSGDSAAESFSLLNQYFKEV 831
Query: 597 EK 598
E+
Sbjct: 832 EE 833
Score = 88 (36.0 bits), Expect = 4.3e-61, Sum P(2) = 4.3e-61
Identities = 45/181 (24%), Positives = 79/181 (43%)
Query: 759 IHPNSVVHGYVCNII-ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
+ P ++ G V +I G + G G D + +G+ VR IL
Sbjct: 1228 LEPGTITVGMVAKMIPHIGLTITLPGGKAGKVSIFHLSDKYTESPLSDFKIGKVVRCYIL 1287
Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
++E G+I LSL+QS + ++ +++ +E I ++ K +V+ V
Sbjct: 1288 --SNENGKIQLSLRQSRLNPRNSRKVED---VE--ITCIKDVKKGQLVRGYVKSVTPSGV 1340
Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
G ++ G ++ F+ S Y F+ H L + G ++ A +LDV K E V+LS
Sbjct: 1341 FFGL--SASLLGRIL-FQNVSP-Y-FVQKHSLYEKYLPEGKLLTAKVLDVNKKENHVELS 1395
Query: 938 L 938
L
Sbjct: 1396 L 1396
Score = 77 (32.2 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 83/348 (23%), Positives = 140/348 (40%)
Query: 715 KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNI 772
K+VI PG + L++ +D +S + +S + L+ A+Q + S HP V H I
Sbjct: 894 KNVI-PGEKAKGLVLHVDAITSKVYVSLREELLKKRAKQRLTKNSQ-HPAIVQH-----I 946
Query: 773 IETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
E V L GRL S D R D S+ VGQ + + + V + + L++
Sbjct: 947 AEEFAIVSLLDSGRLAAIPIASHFNDTFRFD-SEKLKVGQRIYATLKMVKANDLGVLLAV 1005
Query: 831 KQSCCSSTDASFMQE-HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
+ + +E LEE +A + KH+ S V G + SV V + D
Sbjct: 1006 QDPAKKNAFVRDRKESETALEETLAA--AVKHSLSLGDIVTG-TVKSVKPTHVTVAIDDK 1062
Query: 890 VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVDLSLK--TVFID 944
+ S S + + H T+++G + A ++ DV R + ++ T +
Sbjct: 1063 LTGSIHA-SRILDEVPIHSFPTYTLKAGQKVTARVIGGRDV-NTHRYLPITHPHFTRSVP 1120
Query: 945 RFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKE-----NYLVLSL-PEYNHSIG 998
LG + T + V++ N+L + + P+ +
Sbjct: 1121 ELSIRPSEIEGEVETMRDDTREKLGPYNTGQTVTCFVRKYNTLKNWLEVEVTPDVRGRVP 1180
Query: 999 YASVSDYNTQ--KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI 1044
+S NT+ K P+K F NGQ++ ATV ++ T L L L I
Sbjct: 1181 RLLLS-LNTKVLKHPEKNFKNGQALSATVTGTDATET--NLFLSLTGI 1225
Score = 76 (31.8 bits), Expect = 8.0e-60, Sum P(2) = 8.0e-60
Identities = 34/147 (23%), Positives = 59/147 (40%)
Query: 693 GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL 752
G G + HL+D + + S K G + + +L NE+ + LS + S +N
Sbjct: 1253 GGKAGKVSIFHLSDKYTESPL--SDFKIG-KVVRCYILSNENGKIQLSLRQSRLNPRNSR 1309
Query: 753 PSD------ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG--FAPRSKAVDGQRADLSK 804
+ + +V GYV ++ +G F L G Q+ L +
Sbjct: 1310 KVEDVEITCIKDVKKGQLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYE 1369
Query: 805 TYYV-GQSVRSNILDVNSETGRITLSL 830
Y G+ + + +LDVN + + LSL
Sbjct: 1370 KYLPEGKLLTAKVLDVNKKENHVELSL 1396
Score = 54 (24.1 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 1064 GSLVQAEITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
G++ + ++ P + L + G G++ I ++D E+ S+FKIG+ V I+
Sbjct: 1231 GTITVGMVAKMIPHIGLTITLPGGKAGKVSIFHLSD---KYTESPLSDFKIGKVVRCYIL 1287
Query: 1123 AKSN 1126
+ N
Sbjct: 1288 SNEN 1291
Score = 49 (22.3 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 20/101 (19%), Positives = 42/101 (41%)
Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
TG + +++ DV Q RS RK +D +K + ++ ++I
Sbjct: 25 TGKKAKPKFEQDNLFDVHHEEQTQKRKRSEGDHRKQKKFKADIKAPAKDIAISIEPLTIK 84
Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
L GM+ ++ + +++S TG V + H+ + +
Sbjct: 85 ELCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAY 125
Score = 44 (20.5 bits), Expect = 1.9e-56, Sum P(2) = 1.9e-56
Identities = 34/158 (21%), Positives = 59/158 (37%)
Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTG--FAPRSKAVDGQRADLSKTYYV-GQSVRSN 815
+ +V GYV ++ +G F L G Q+ L + Y G+ + +
Sbjct: 1322 VKKGQLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAK 1381
Query: 816 ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE----EKIAMLQSSKHNGSELKWV-E 870
+LDVN + + LSL + S + E L E+ + +K E+K +
Sbjct: 1382 VLDVNKKENHVELSLLPE--DTEMPSVLPESLGLPRCGAEEEKREEDNKEKKEEVKMKRK 1439
Query: 871 GFIIGSVIEGKVH---------ESNDFGVVVSFEEHSD 899
+ S E + + ND G+ V + E D
Sbjct: 1440 QRRVNSESEQETKPKKRKFSPADENDSGIEVYYREEED 1477
Score = 41 (19.5 bits), Expect = 3.9e-56, Sum P(2) = 3.9e-56
Identities = 19/91 (20%), Positives = 42/91 (46%)
Query: 1061 YDVGSLVQAEITEIKPLE--LRLKFGIGFHGRIH--ITEVNDDKSNVVENLFSNFKIGQT 1116
Y+ G V + + L+ L ++ GR+ + +N + V+++ NFK GQ
Sbjct: 1147 YNTGQTVTCFVRKYNTLKNWLEVEVTPDVRGRVPRLLLSLN---TKVLKHPEKNFKNGQA 1203
Query: 1117 VTARIIAK-SNKPDMKKSFLWELSIKPSMLT 1146
++A + + + ++ S S++P +T
Sbjct: 1204 LSATVTGTDATETNLFLSLTGIQSLEPGTIT 1234
>ZFIN|ZDB-GENE-030131-4076 [details] [associations]
symbol:pdcd11 "programmed cell death 11"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 ZFIN:ZDB-GENE-030131-4076 GO:GO:0003723 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HOGENOM:HOG000088607 HOVERGEN:HBG108419 OMA:LHLADIY
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 EMBL:CR812943
IPI:IPI00817258 UniGene:Dr.76104 Ensembl:ENSDART00000074342
Ensembl:ENSDART00000124833 Uniprot:B8JIP9
Length = 1816
Score = 662 (238.1 bits), Expect = 3.5e-62, Sum P(2) = 3.5e-62
Identities = 216/914 (23%), Positives = 422/914 (46%)
Query: 54 FPRGGGHSLTQRER--DEIHAEVDAEFEAVERGLHXXXXXXXXXTERKAN-ETVDDLGSL 110
FPRGG T+R++ D I EVD F+ + + K+ + VD+
Sbjct: 8 FPRGG----TERKKPTDLIPHEVDNLFDTPAKAVKKKKKAVKQDEAPKSKKQKVDE---- 59
Query: 111 FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXX---XXXXXX 167
+ I + L++++ G + G V EV++ ++V+
Sbjct: 60 --ENIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAY 117
Query: 168 XXILDNEIEANE--DNLLPT--IFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXX 223
IL+++++ ++ + ++P +F +G L+ C+V LD K+ G +
Sbjct: 118 TNILNDKLDTDDGLEEVVPLSKLFTLGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNK 175
Query: 224 XXXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283
++ M L+ V+S+EDHGY++ G+ FLP+ + + + V +L+ +
Sbjct: 176 ALNSVALKPAMTLSGCVESVEDHGYLVDIGIGGTKAFLPKKSTSSKQDLYVGQYVLV--L 233
Query: 284 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
+ + + +VV LS +P + K + +G ++D L+PG+++ V+ + +G++++FL+
Sbjct: 234 IEDVKDSGRVVRLSQNPQALVKACAQTKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLS 293
Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAP 401
FTG VD HL +T Y++ +++ ARIL+V P++R VGL+L +LL
Sbjct: 294 SFTGVVDFLHLDEDKEST-----YSKGQEILARILYVQPSTRQVGLSLRSHLLPPGGAVL 348
Query: 402 PSHV--KVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
H +VG++ + + + A+V ++ +E +L+ +
Sbjct: 349 DLHFSERVGEVVQGCQMTSLHHYSGALMKMLD---GSRAFVH-RNLLKEPKEELDTNHLM 404
Query: 460 GSCVRV-RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
+ RI+ + +E + L+ S+ E F+ D+K G +V+G V + G V+
Sbjct: 405 SQTQHILRIINYSPIEQIYQATLRWSSIETPFFSCQDIKVGQIVEGTVTDLQKHGVYVRI 464
Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAI 576
++ + P H+++ + P KKF G ++ RVL V++++ + +T KK LV+S L I
Sbjct: 465 GEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLLVEAQKKLLILTRKKALVESTLPI 524
Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
SY++A I+HG++ I++ GC VRFY V+G P EL + P ++ VGQVV
Sbjct: 525 FQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVV 584
Query: 637 KCRIMSSIPASRRINLSFM-MKPTRVSEDXXXXXXXXXXXXXXXXX---XXXXXXXXIAK 692
K +++ + + LSF + V E+ I
Sbjct: 585 KVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEVSIIP 644
Query: 693 GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN-ESSNLLLSAKYSLINSAQQ 751
+ +PT HL+DH+ + + ++ G L+ L N + ++L+ K L +
Sbjct: 645 EEVQAFLPTTHLSDHVTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLKAYIED 704
Query: 752 --LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
+P + S + + G+V NI+ G F+ F + G AP + D + S + +
Sbjct: 705 GAIPKNFSELQVGMQMVGWVKNIMPYGVFISFPYGVFGLAPIANMGDQFIKETSGIFDID 764
Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL-LEEKIAMLQSSKHNG-SELK 867
Q+V + + +++ E R +SLK S S ++ F L+E+ + + G S++
Sbjct: 765 QTVVAKVTNLDEEKQRFLVSLKLSELSLSENEFHTRLIQGLKERRNISEMRAGRGDSDVL 824
Query: 868 W-VEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL 925
W + +G ++ V ++ + G V+++ ++ S V + + G + G + A IL
Sbjct: 825 WKLSALTVGDQMKMIVGDTTEDGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKLNAVIL 884
Query: 926 DVAKAERLVDLSLK 939
+ + V +SL+
Sbjct: 885 HIDFVKSQVHVSLR 898
Score = 58 (25.5 bits), Expect = 3.5e-62, Sum P(2) = 3.5e-62
Identities = 14/60 (23%), Positives = 33/60 (55%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
+G L++ + ++K L + + G GR+H++++ + ++ S K+G + AR+I
Sbjct: 997 LGELMKVTVKKLKALCVLVNLPSGNTGRVHVSQILEFP-DIGSCPTSVLKVGMEMEARVI 1055
Score = 48 (22.0 bits), Expect = 3.9e-61, Sum P(2) = 3.9e-61
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 973 TVNAIVEIVKENYLVLSLPEYNHSIGYAS-VSDYNTQKFPQKQFLNGQSV 1021
T+ + +I L+L+LP N + + + +SD T+K P + + GQ +
Sbjct: 1187 TLAMVQKIQPHKGLMLALPYENTGLAHLTDLSDSYTEK-PLESYKEGQII 1235
Score = 43 (20.2 bits), Expect = 6.0e-60, Sum P(3) = 6.0e-60
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 984 NYLVLSLPEYNHSI 997
N+L +S P+YN SI
Sbjct: 1064 NFLAISHPDYNISI 1077
Score = 40 (19.1 bits), Expect = 2.7e-60, Sum P(2) = 2.7e-60
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 980 IVKENYLVLSL-PEYNHSIGY-ASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
I KE L + + P+ ++ A + K PQ+ F GQ++ A V+++
Sbjct: 1113 IKKEQLLEVHVKPDIMGAVPLLAMCNKLGLSKHPQRLFKPGQALSAKVVSV 1163
Score = 39 (18.8 bits), Expect = 6.0e-60, Sum P(3) = 6.0e-60
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 1111 FKIGQTVTARIIAKSNKPDMKKSFLWELSI 1140
FK GQ ++A++++ D KK + LS+
Sbjct: 1150 FKPGQALSAKVVSV----DPKKPIQFSLSL 1175
>POMBASE|SPCC1183.07 [details] [associations]
symbol:SPCC1183.07 "U3 snoRNP-associated protein Rrp5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005730
"nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0030515 "snoRNA binding" evidence=ISO]
[GO:0032040 "small-subunit processome" evidence=ISO] [GO:0042134
"rRNA primary transcript binding" evidence=ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 SMART:SM00386
PomBase:SPCC1183.07 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0030515 GO:GO:0006397
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006364 GO:GO:0042134 GO:GO:0032040
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 eggNOG:COG0539
KO:K14792 OMA:LHLADIY PIR:T40847 RefSeq:NP_587890.1
ProteinModelPortal:O74835 STRING:O74835 EnsemblFungi:SPCC1183.07.1
GeneID:2538897 KEGG:spo:SPCC1183.07 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 NextBio:20800076 Uniprot:O74835
Length = 1690
Score = 452 (164.2 bits), Expect = 6.5e-49, Sum P(2) = 6.5e-49
Identities = 186/767 (24%), Positives = 318/767 (41%)
Query: 20 NKASK-NQFKNSKKQINDAVEAQDLALXXXXXXXXFPRGGGHSLTQRERDEIHAEVDAEF 78
NK + N + S Q N+ + + L FPRGG SLT E E A ++A+
Sbjct: 4 NKRKRSNASEGSDSQGNERISS----LSANEATQDFPRGGASSLTPLEYKE--AVLEAKK 57
Query: 79 EAVERGLHXXXXXXXXXTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLW 138
+ +E ++K ++ L + L + + KNI+ G +
Sbjct: 58 DFMESASGTAELSKKTRPKKKGSKK-SSKSELDNEE---NLKVHIQSLRYKNITPGSLIL 113
Query: 139 GVVAEVNEKDLVI----CXXXXXXXXXXXXXXXXXI--LDNEIEAN-----EDNL--LPT 185
G +A++N DL + C + +DN E N ED L +P
Sbjct: 114 GQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNAATEEEDGLNQIPD 173
Query: 186 I---FHVGQLVSCIVLQL-DDDKKEIGKRKIWXXXXXXXXXXXX-XXETVQEGMVLTAYV 240
+ + VGQ V V L ++ + GKR I G ++ A V
Sbjct: 174 LMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSAPEAADFVAGSMIQAVV 233
Query: 241 KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
SIEDHG + G+ ++TGFL + ++ N V+ LL V+ DR + +LS
Sbjct: 234 SSIEDHGIVFDIGINNYTGFLSKKHI--NDFPFVEGQSLLCSVISKEDR---IFHLS--- 285
Query: 301 DTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
++ TK L+ + S+ ++PG ++ V I E+GV+ ++ T DI+H +
Sbjct: 286 --LTATSTKALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMGVVDVTSDIYH-SSPVK 342
Query: 360 TTNWKNDYNQHKKVNARILFV---DPTSRAVG-----LTLNPYLLHNRAPPSHVKVGDIY 411
+ ++ + K V AR+LFV DP AV LT N + N P + +G I
Sbjct: 343 GEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSFLPHVLTFN-FATPNTPHPDQLDIGFIV 401
Query: 412 DQSKXXXXXXXXXXXXXIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
+ +K + +S A+++ +SD + YK S RI+ +
Sbjct: 402 NAAKVTYVSSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNSGPYKVDSTHEARIINY 461
Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
+++ L + S D++ G V G + + G +V G+ L P H
Sbjct: 462 SYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTH 521
Query: 531 MSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
M++ + P ++FKVG+ + RVL V KR+ +T KK+L+ + L ++ Y +AT
Sbjct: 522 MADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQ 581
Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
T G + +I + G V FYN V+ F P SE+ + + VGQ + I+S P +R
Sbjct: 582 TVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENR 641
Query: 649 RINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYS-KGTIPTEHLAD- 706
++ + + + G G I L D
Sbjct: 642 KMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLCDG 701
Query: 707 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ 751
L + + + ++ + ++LVL ++S L LS K SL+ +A++
Sbjct: 702 DLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKE 748
Score = 447 (162.4 bits), Expect = 6.6e-43, Sum P(2) = 6.6e-43
Identities = 173/708 (24%), Positives = 294/708 (41%)
Query: 172 DNEIEANEDNL-----LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWXXXXXXXXXXXX 225
DN ED L L ++ VGQ V V L ++ + GKR I
Sbjct: 158 DNAATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSA 217
Query: 226 -XXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV 284
G ++ A V SIEDHG + G+ ++TGFL + ++ N V+ LL V+
Sbjct: 218 PEAADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHI--NDFPFVEGQSLLCSVI 275
Query: 285 RSIDRTRKVVYLSSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLT 343
DR + +LS ++ TK L+ + S+ ++PG ++ V I E+GV+ ++
Sbjct: 276 SKEDR---IFHLS-----LTATSTKALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMG 327
Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVG-----LTLNPYL 395
T DI+H + + ++ + K V AR+LFV DP AV LT N +
Sbjct: 328 VVDVTSDIYH-SSPVKGEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSFLPHVLTFN-FA 385
Query: 396 LHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVT-ISDVAEEEVRKLE 454
N P + +G I + +K + +S A+++ +SD +
Sbjct: 386 TPNTPHPDQLDIGFIVNAAKVTYVSSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNS 445
Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
YK S RI+ + +++ L + S D++ G V G + + G
Sbjct: 446 GPYKVDSTHEARIINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVDGTIAKLIPQGI 505
Query: 515 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKS 572
+V G+ L P HM++ + P ++FKVG+ + RVL V KR+ +T KK+L+ +
Sbjct: 506 VVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNT 565
Query: 573 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
L ++ Y +AT T G + +I + G V FYN V+ F P SE+ + + V
Sbjct: 566 DLPLIYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKV 625
Query: 633 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAK 692
GQ + I+S P +R++ + + +
Sbjct: 626 GQTLSVTIVSCDPENRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDL 685
Query: 693 GYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINS 748
G G I L D L + + + ++ + ++LVL ++S L LS K SL+ +
Sbjct: 686 GDKVTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEA 745
Query: 749 AQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
A++ +P + + + G+V N G FV F L P++ + S Y
Sbjct: 746 AKENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAYISEEYVPVPSAVY 805
Query: 807 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA-SFMQEHFLLEEKI 853
QSV L V + +S K A FM+ + ++ +
Sbjct: 806 KPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPV 853
Score = 153 (58.9 bits), Expect = 6.5e-49, Sum P(2) = 6.5e-49
Identities = 45/154 (29%), Positives = 74/154 (48%)
Query: 719 KPGYEFDQLLV-----LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
KP + +QL+ +DN+S + +S K S I + ++ + I S + G V +
Sbjct: 1188 KPHFHVNQLVKGSIVGIDNDSKRIEMSLKQSKIKDSSEITKTFADIAVGSNLDGTVVKVG 1247
Query: 774 ETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+ G +R G + G +S+ D ++SK Y G VR+++LDV+SE RI L LK
Sbjct: 1248 DYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLK 1307
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
S S M ++ EE + M + + SE
Sbjct: 1308 SSYFDSDSDISMSDN---EEDVEMRSEDQSDTSE 1338
Score = 106 (42.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 58/244 (23%), Positives = 107/244 (43%)
Query: 430 PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL-ATGILKASAFEG 488
PS P +DV +E+ L+K + G ++ ++ L A G L+ FE
Sbjct: 994 PSVNGRIPILDLTTDV--KELNSLQKHFFLGKAIKCYVVNAEDSITLSAIGPLQG--FEN 1049
Query: 489 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA-LCPLPHMSEFEIVKPGKKFKVGA 547
L PG + GKV V+ GAI+Q PG + + + +++I+ P KF
Sbjct: 1050 LT-------PGSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFDDYDIL-PETKFTRNN 1101
Query: 548 ELVFRVLGVK--SKRITVTHKKTLVKSK-LAILSSYAEATDRL----ITHGWITKIEKHG 600
+ VL V ++++ ++ + + +S+ + I + D L I G++ + G
Sbjct: 1102 LVGVCVLSVDVPNRKVALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQG 1161
Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
FV + + EL D + +HV Q+VK I+ S+RI +S +K +
Sbjct: 1162 LFVTIGHNLIARVKIGEL-FDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMS--LKQS 1218
Query: 660 RVSE 663
++ +
Sbjct: 1219 KIKD 1222
Score = 101 (40.6 bits), Expect = 5.7e-48, Sum P(3) = 5.7e-48
Identities = 27/101 (26%), Positives = 52/101 (51%)
Query: 852 KIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 910
++++ QS + SE+ K +GS ++G V + D+GV++ + ++ G ++A
Sbjct: 1212 EMSLKQSKIKDSSEITKTFADIAVGSNLDGTVVKVGDYGVLIRIDGTDNIVGLCHKSEIA 1271
Query: 911 GATV-------ESGSVIQAAILDVAKAERLVDLSLKTVFID 944
A V SG ++A +LDV +R + L LK+ + D
Sbjct: 1272 DAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLKSSYFD 1312
Score = 93 (37.8 bits), Expect = 5.7e-48, Sum P(3) = 5.7e-48
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
+ G+VCN+ G FV L + D D ++V Q V+ +I+ +++++
Sbjct: 1149 ICRGFVCNVANQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDS 1208
Query: 824 GRITLSLKQS 833
RI +SLKQS
Sbjct: 1209 KRIEMSLKQS 1218
Score = 87 (35.7 bits), Expect = 7.0e-41, Sum P(3) = 7.0e-41
Identities = 28/103 (27%), Positives = 48/103 (46%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-NL-FSNFKIGQTVT 1118
Y G + A +T K +L + HGR+ ++EV D+ +V+ N F G +
Sbjct: 863 YVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKIR 922
Query: 1119 ARIIAKSNKPDMK----------KSFLWELSIKPSMLTGKWFT 1151
R++ + + K K FL ELS++PS+L + F+
Sbjct: 923 VRVLGIHDSRNHKFLPISHRVSPKQFL-ELSVRPSILNMEPFS 964
Score = 56 (24.8 bits), Expect = 4.1e-44, Sum P(3) = 4.1e-44
Identities = 23/97 (23%), Positives = 44/97 (45%)
Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
+++A+ S+ SA ++ P S + G V N+ E G ++ G ++G R D
Sbjct: 1029 VVNAEDSITLSAIGPLQGFENLTPGSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFDD 1088
Query: 798 QRADLSKTYYVGQS-VRSNILDVNSETGRITLSLKQS 833
L +T + + V +L V+ ++ LS + S
Sbjct: 1089 YDI-LPETKFTRNNLVGVCVLSVDVPNRKVALSARNS 1124
Score = 49 (22.3 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 1111
VG ++EI + L + + G R H+ +V+ +K + L S++
Sbjct: 1262 VGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLKSSY 1310
Score = 48 (22.0 bits), Expect = 7.3e-38, Sum P(3) = 7.3e-38
Identities = 25/108 (23%), Positives = 43/108 (39%)
Query: 843 MQEHFLLEEKIAMLQSSKHNGSELKWV---EGF---IIGSVIEGKVHESNDFGVVVSFEE 896
+Q+HF L + I + + L + +GF GS + GKV N+ G ++
Sbjct: 1015 LQKHFFLGKAIKCYVVNAEDSITLSAIGPLQGFENLTPGSRLVGKVTNVNEAGAILQLPG 1074
Query: 897 H-----SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
H S + F + L +++ +L V R V LS +
Sbjct: 1075 HMSGRVSRIDMFDDYDILPETKFTRNNLVGVCVLSVDVPNRKVALSAR 1122
Score = 47 (21.6 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 538 KPGKKFKVGAELVFRVLGVKSKR 560
KP K+F G ++ RVLG+ R
Sbjct: 910 KPLKRFHKGDKIRVRVLGIHDSR 932
Score = 43 (20.2 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 455 KKYKEGSCVRVRILG 469
K++ +G +RVR+LG
Sbjct: 913 KRFHKGDKIRVRVLG 927
Score = 39 (18.8 bits), Expect = 1.7e-41, Sum P(3) = 1.7e-41
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 846 HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF--GVVVSFEEHSDVYGF 903
H LLE + L S+H G +E F I G G++ S+ + D++
Sbjct: 1566 HGLLERSLQSLPKSEHVGI----IEKFAILEFKNGDPERGRTIFEGLLSSYPKRLDLWNV 1621
Query: 904 I 904
+
Sbjct: 1622 L 1622
Score = 39 (18.8 bits), Expect = 7.0e-41, Sum P(3) = 7.0e-41
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 976 AIVEIVKENYLVLSLPEYNHSIGY 999
++VE KEN + +++ + I Y
Sbjct: 741 SLVEAAKENRMPINITDLKEGIKY 764
>CGD|CAL0005606 [details] [associations]
symbol:orf19.1578 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0032040 "small-subunit
processome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386
CGD:CAL0005606 GO:GO:0003723 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:AACQ01000008 EMBL:AACQ01000007 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_722479.1 RefSeq:XP_722620.1 ProteinModelPortal:Q5ALK0
STRING:Q5ALK0 GeneID:3635820 GeneID:3635933 KEGG:cal:CaO19.1578
KEGG:cal:CaO19.9151 Uniprot:Q5ALK0
Length = 1722
Score = 482 (174.7 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 187/772 (24%), Positives = 325/772 (42%)
Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIED 245
IF +G + + +D K K++I + + +L VKSIED
Sbjct: 180 IFKLGSWLKAKITTSHEDYKN--KKRIELTIEPESVNENLEVDDLIVNNILQCSVKSIED 237
Query: 246 HGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSDPDT 302
HG IL G ++GF+ L N+ IDV PGL++ + S R + L T
Sbjct: 238 HGIILDTGKQEYSGFISNKELT-NAQIDVNTIVPGLVILCSIASKPSGR-TINLKPTTAT 295
Query: 303 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 362
VS T SID + PG++V + + ENG++ GT+ + +QN F
Sbjct: 296 VSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FELKE 354
Query: 363 WKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIYDQ 413
K+ Y V AR+L V + T + + L++ P++L S + +G ++DQ
Sbjct: 355 LKHKYAIGSTVKARVLAVLLKNGTKKLI-LSILPHVLQLGDDSSQTEALEAFPIGHVFDQ 413
Query: 414 SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
K S+ + I ++ + L Y GS + R++GF +
Sbjct: 414 VKVIGNDKHYVYVSF-----GSSSLFGQIHQSKFDDNKSL-LDYSIGSTHKSRVIGFNEV 467
Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPH 530
+ L ++ + DV G ++ +++ V D G V+F K P
Sbjct: 468 DNLLILTFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGVGINVKFFDEFKGFVPGNQ 527
Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRLIT 589
MS+ ++V P +KF+VG + R+L KR VT +K LV + ILS +A T
Sbjct: 528 MSDIKLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGFKT 587
Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
+ + K +GC V F+ ++ F P++E+ + SS +GQ+VK RI+ +R
Sbjct: 588 NAIVEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNKEQKR 647
Query: 650 INLSFM----MKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA 705
+ ++ + + +E + + +G I L+
Sbjct: 648 LVVTLKQSSELSNAQKNEISKLVSGKSIVKTVVVEKTKDSVLVELEGSHLRGVIYDGQLS 707
Query: 706 D-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSAQQ--LPSDASHIH 760
D + E + + G E ++L+LD + + ++ +AK SLI++++ P + S I
Sbjct: 708 DGNYEQNRALAKRLAIG-ETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEFSDIA 766
Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
N VV GYV ++ G FV F GRLTG DLSK ++ QS+ +L V+
Sbjct: 767 VNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCRVLSVD 826
Query: 821 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKI-AMLQSSKHNGSELKWVEGFIIGSVIE 879
E R L+L S + D + + +KI A Q + +K V+G + +
Sbjct: 827 KENERFLLTLNNSSSFTKDDEQLIKPIDATKKIVADYQPGETTKVVIKAVKGTQLNVQLA 886
Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
+ D + F+ D+ HQ ++ + G + ++ + A+
Sbjct: 887 DNLQGRVD--ITQCFKSIKDIKNL---HQPLASSFQKGETLDVKVIGIHDAK 933
Score = 91 (37.1 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 31/104 (29%), Positives = 52/104 (50%)
Query: 850 EEKIAM-LQSSKHNGSELKWVEGFI---IGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
E +I M L+ S+ NG ELK ++ F IG + EG V + DFGV V + +V G
Sbjct: 1208 EGRILMTLKESEVNG-ELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVSGLCH 1266
Query: 906 HHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVF 942
H +++ V++ G ++ IL + +R + L +K +
Sbjct: 1267 HSEISENDVDNVKSLFGTGDRVKVKILKIDSEKRQLSLGMKASY 1310
Score = 68 (29.0 bits), Expect = 2.3e-42, Sum P(4) = 2.3e-42
Identities = 41/180 (22%), Positives = 74/180 (41%)
Query: 967 DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS-VSDYNTQKFPQKQFLNGQSVIATV 1025
DL Q + V+ + N + +SL +++ S +SD + + Q F Q VI +
Sbjct: 1144 DLTRGQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDW-QNFFKPNQPVIGKI 1202
Query: 1026 MALPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLKFG- 1084
+ + GR+L+ LK +G + + +T + +K
Sbjct: 1203 V---NCKQEGRILMTLKE--SEVNGELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDG 1257
Query: 1085 -IGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPS 1143
+ G H +E+++ N V+N+ S F G V +I+ K D +K L L +K S
Sbjct: 1258 TVNVSGLCHHSEISE---NDVDNVKSLFGTGDRVKVKIL----KIDSEKRQL-SLGMKAS 1309
Score = 50 (22.7 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 21/99 (21%), Positives = 34/99 (34%)
Query: 54 FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHXXXXXXXXXTERKANETVDDLGSLF 111
FPRGG L+ E EI E D FE E ++ + + +
Sbjct: 16 FPRGGSKPLSALEVKEISNEATKDVLFEQAESNKRSNSNKSDQPKKKHKKSSKNKSKNDK 75
Query: 112 GDGISGKLPRYA-NKITLKNISAGMKLWGVVAEVNEKDL 149
D KN+ +G + G + +N+ D+
Sbjct: 76 NDNDEETTQSVTIETFNFKNLVSGSTVLGQIKTINKLDI 114
Score = 49 (22.3 bits), Expect = 2.1e-40, Sum P(4) = 2.1e-40
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IAKSN 1126
A I +IKP + ++ G +T+ +D S+ ++++F+ + V+A++ I +N
Sbjct: 1065 ARIIKIKPNHVLVELGNNVIASSFVTDALNDYSDKLDHVFN---VNDYVSAKVLDIDSTN 1121
Query: 1127 K 1127
K
Sbjct: 1122 K 1122
Score = 47 (21.6 bits), Expect = 9.8e-45, Sum P(4) = 9.8e-45
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 18 KFNKASKNQFKNSKKQINDAVEAQDLAL 45
K K+SKN+ KN K ND Q + +
Sbjct: 62 KHKKSSKNKSKNDKND-NDEETTQSVTI 88
Score = 39 (18.8 bits), Expect = 9.8e-45, Sum P(4) = 9.8e-45
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 106 DLGSLFGDGISGKLP 120
D+G GD ++G +P
Sbjct: 113 DIGLALGDNLTGYIP 127
>DICTYBASE|DDB_G0286941 [details] [associations]
symbol:DDB_G0286941 species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
dictyBase:DDB_G0286941 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000092
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 RefSeq:XP_637477.1
ProteinModelPortal:Q54L26 EnsemblProtists:DDB0187202 GeneID:8625876
KEGG:ddi:DDB_G0286941 InParanoid:Q54L26 OMA:IEPLEMI Uniprot:Q54L26
Length = 804
Score = 430 (156.4 bits), Expect = 5.8e-37, P = 5.8e-37
Identities = 128/482 (26%), Positives = 220/482 (45%)
Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIED 245
+F+ GQ++ C ++ L D G + +T E M + ++SI+D
Sbjct: 234 MFYKGQMLKCAIVGLTDHHTIEG---LHCTLRPELVNVGSSIDTFSEDMTIHGCIESIQD 290
Query: 246 HGYILHFGLPSFTGFLPRNNLA----ENSGIDVKP---GLLLQGVVRSIDRTRKVVYLSS 298
GYI+ FG + GFL +N + S D G ++ +++SID++ K L+
Sbjct: 291 KGYIVSFGSKDYNGFLEFSNTCYYYPDQSSDDQNQLYIGQPIESLIQSIDKSTKTFKLTI 350
Query: 299 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
VS+ K+ + I+++ + GM+V T+V +L NG+ L FL +F G + I H QN
Sbjct: 351 SHPLVSRSTIKNSETITMESIKAGMLVETKVLRVLSNGLHLGFLDFFAGDIFILHSQNPI 410
Query: 359 PTTNWKNDYNQHKKVNARILFVDPTSRAVGL-TLN------PYLLHNRAPPSHVKVGDIY 411
T Y +++ V ARILFVD + +GL TL PY P +V+ G +
Sbjct: 411 ET------YKENQGVKARILFVDQVHKRIGLSTLGHVLGFKPYPFGTTKPGQYVESGKLT 464
Query: 412 DQSKXXXXXXXXXXXXXIPSTPVSTP----AYVTISDVAE--EEVRKLEKKYKEGSCV-- 463
+ + S P+ P Y+ I ++ ++ K ++K+ +
Sbjct: 465 IERIEPLEMIVTTESTVVQSNPMKAPLLLRGYIHIEELESGVNDLTKASNQFKKTEPLEK 524
Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
R R+ HL+G+ T + E ++++D+ GMVV+G + V + V+ +
Sbjct: 525 RCRVKHLDHLDGMVTYTARTRELEKKFYSYNDLSCGMVVQGVIRYVRADSLEVELATSIH 584
Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYA 581
+ HM++ I P + FKVGA + R++ V+ KR+ +T KK+L+ S+ I++
Sbjct: 585 GVVARHHMADTNITDPLEFFKVGATVKVRIINVEPDKKRLQLTLKKSLIYSEYPIITDKN 644
Query: 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
I+HG ITK + FV FYN G L + VG+ V + +
Sbjct: 645 TTPIGTISHGIITKTTRFLVFVSFYNNSFGVVEAQNLSNSKIESVQKQFPVGRTVLAKTL 704
Query: 642 SS 643
S
Sbjct: 705 FS 706
>SGD|S000004842 [details] [associations]
symbol:RRP5 "RNA binding protein involved in synthesis of
both 18S and 5.8S rRNAs" species:4932 "Saccharomyces cerevisiae"
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
Pfam:PF00575 PROSITE:PS50126 SMART:SM00386 SGD:S000004842
GO:GO:0005730 GO:GO:0008266 EMBL:BK006946 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z49939
GO:GO:0030686 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472
InterPro:IPR022967 SMART:SM00316 GO:GO:0000464 GO:GO:0000480
eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
HOGENOM:HOG000167551 OrthoDB:EOG4N07P1 PIR:S57596
RefSeq:NP_013956.1 ProteinModelPortal:Q05022 SMR:Q05022
DIP:DIP-6535N IntAct:Q05022 MINT:MINT-680694 STRING:Q05022
PaxDb:Q05022 PeptideAtlas:Q05022 EnsemblFungi:YMR229C GeneID:855269
KEGG:sce:YMR229C CYGD:YMR229c OMA:FYGNVRG NextBio:978879
Genevestigator:Q05022 GermOnline:YMR229C Uniprot:Q05022
Length = 1729
Score = 205 (77.2 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 126/602 (20%), Positives = 232/602 (38%)
Query: 572 SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
++L ++S+Y A + T I + +GC + F+ G+ GF P SE+ P
Sbjct: 589 NELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPE 648
Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXX 687
+GQ V +++ RRI + + + ++
Sbjct: 649 EHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTK 708
Query: 688 XXIAKGYS----KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSA 741
+ +G I HL+D +E ++ G E L++ D + +S
Sbjct: 709 DSVIVEIPDVGLRGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSL 768
Query: 742 KYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
K SLI A++ LP D ++ + +H Y+ +I + G FV F G+ G S AVD
Sbjct: 769 KSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVD 828
Query: 797 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
+ D+SK +Y+ QSV +L + + + LSLK A ++E ++K+
Sbjct: 829 SRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLK--------APKVKEE---KKKVESN 877
Query: 857 QSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITH 906
+ S W + IGS+++ K+ + N V+++ H D Y IT
Sbjct: 878 IEDPVDSSIKSW-DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITD 936
Query: 907 HQLAGATVESGSVIQAAIL---DVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXX 963
+ + + VI+ I+ DV K+ + + ++ K +
Sbjct: 937 KKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTK 995
Query: 964 XXXDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVI 1022
++ + Q + V N+L L++ P I ++D N F + N +SV
Sbjct: 996 SLEEINIGQELTGFVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVF 1050
Query: 1023 ATVMALPSS-STAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRL 1081
AL ++ R + AI VG + + +I + L
Sbjct: 1051 PLGSALQVKVASIDREHGFVNAIGKSHVDINMSTIK-----VGDELPGRVLKIAEKYVLL 1105
Query: 1082 KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIK 1141
G G IT+ +D S ++ F + KI + +++ + KK ELS++
Sbjct: 1106 DLGNKVTGISFITDALNDFSLTLKEAFED-KINNVIPTTVLSVDEQN--KKI---ELSLR 1159
Query: 1142 PS 1143
P+
Sbjct: 1160 PA 1161
Score = 204 (76.9 bits), Expect = 3.0e-30, Sum P(4) = 3.0e-30
Identities = 78/284 (27%), Positives = 129/284 (45%)
Query: 103 TVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXX 162
T DL F DGISG Y N L +IS + ++ +++E D+
Sbjct: 130 TKQDLCITFTDGISG----YVN---LTHISE--EFTSILEDLDE-DMDSDTDAADEKKSK 179
Query: 163 XXXXXXXILDNEIEA-NEDNLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWXX 215
D+E E ++ N LP + FH+GQ + C V++ L+ K+ K++I
Sbjct: 180 VEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELT 239
Query: 216 XXXXXXXXXXXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK 275
+ V+ + A VKSIEDHG L GLP FTGF+ + + +
Sbjct: 240 IEPSSVNIYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKL--L 296
Query: 276 PGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
PG + G + + DR+ +V + D +K +T+ SID ++PG +V +SI +
Sbjct: 297 PGAVFLGNITKKSDRS--IVVNTDFSDKKNK-ITQIS---SIDAIIPGQIVDLLCESITK 350
Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
NG+ +G V++ HL+ TF + K+ + + RI+
Sbjct: 351 NGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFVIGSSIRCRII 393
Score = 173 (66.0 bits), Expect = 3.0e-30, Sum P(4) = 3.0e-30
Identities = 66/274 (24%), Positives = 120/274 (43%)
Query: 494 SDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
+D+ G ++ ++ +V S G ++ F G KA P H+S+ +V P +KFK+G+++
Sbjct: 505 NDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKG 564
Query: 552 RVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFV 603
RV+ V S+ + VT KK+LV ++L ++S+Y A + T I + +GC +
Sbjct: 565 RVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCII 624
Query: 604 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
F+ G+ GF P SE+ P +GQ V +++ RRI + + + ++
Sbjct: 625 SFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQ 684
Query: 664 DXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYS----KGTIPTEHLAD-HLEHATVMKSVI 718
+ +G I HL+D +E +
Sbjct: 685 QKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGLRGVIYVGHLSDSRIEQNRAQLKKL 744
Query: 719 KPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ 751
+ G E L++ D + +S K SLI A++
Sbjct: 745 RIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKK 778
Score = 149 (57.5 bits), Expect = 2.4e-19, Sum P(5) = 2.4e-19
Identities = 49/186 (26%), Positives = 93/186 (50%)
Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
A+A + +H D+K G +V G V V+ G V V+A P+ +S+ +K KK
Sbjct: 1161 ATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSD-SYLKEWKK 1219
Query: 543 FKVGAELVF-RVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
F + V +V+ + RI++T +++ + L +L +Y++ + G I + G
Sbjct: 1220 FYKPMQYVLGKVVTCDEDSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFG 1279
Query: 601 CFVRFYN--GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
FV+ N V G A +E+ + S+++ VG VK ++ + P ++I+LS +K
Sbjct: 1280 VFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLS--LKA 1337
Query: 659 TRVSED 664
+ S++
Sbjct: 1338 SHFSKE 1343
Score = 134 (52.2 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 89/347 (25%), Positives = 141/347 (40%)
Query: 264 NNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISIDLLVPG 322
+N +EN G LQ V SIDR V + + K V ++ I + +PG
Sbjct: 1040 SNFSENIESVFPLGSALQVKVASIDREHGFV------NAIGKSHVDINMSTIKVGDELPG 1093
Query: 323 MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ--HKKVNARILFV 380
RV I E V+L TG I N F T K + + + +L V
Sbjct: 1094 -----RVLKIAEKYVLLDLGNKVTGISFITDALNDFSLT-LKEAFEDKINNVIPTTVLSV 1147
Query: 381 DPTSRAVGLTLNPYLLHNRAPPSH--VKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPA 438
D ++ + L+L P R+ SH +K G+I D S V A
Sbjct: 1148 DEQNKKIELSLRPATAKTRSIKSHEDLKQGEIVD---GIVKNVNDKGIFVYLSRKVE--A 1202
Query: 439 YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSD 495
+V +S +++ +++ +K YK V +++ ++ L+ S G ++ T+SD
Sbjct: 1203 FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSRISL-TLRESEINGDLKVLKTYSD 1261
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP---GKKFKVGAELVFR 552
+K G V +G + +V FG V+ V + L H++E KP F VG R
Sbjct: 1262 IKAGDVFEGTIKSVTDFGVFVKLDNTVN-VTGLAHITEIADKKPEDLSALFGVGD----R 1316
Query: 553 VLGVKSKRITVTHKKTLVKS-KLAILSSYAEATDRLITHGWITKIEK 598
V + K T KK + S K + S AE T + ++EK
Sbjct: 1317 VKAIVLK--TNPEKKQISLSLKASHFSKEAELASTTTTTTTVDQLEK 1361
Score = 124 (48.7 bits), Expect = 4.4e-22, Sum P(4) = 4.4e-22
Identities = 40/138 (28%), Positives = 66/138 (47%)
Query: 699 IPTEHLADHLEHATVMKSVIKP-GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
+P L+D + K KP Y +++ D E S + L+ + S IN ++ S
Sbjct: 1204 VPVSKLSD--SYLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRESEINGDLKVLKTYS 1260
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 815
I V G + ++ + G FV+ +TG A ++ D + DLS + VG V++
Sbjct: 1261 DIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAI 1320
Query: 816 ILDVNSETGRITLSLKQS 833
+L N E +I+LSLK S
Sbjct: 1321 VLKTNPEKKQISLSLKAS 1338
Score = 109 (43.4 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTAR 1120
+GS+V+A+I +K +L + HGR+ I EV D + + SN+K + +
Sbjct: 894 IGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVK 953
Query: 1121 IIA----KSNK--P---DMKKSFLWELSIKPSMLTGK 1148
II KS+K P + K+ + ELS+KPS L K
Sbjct: 954 IIGNHDVKSHKFLPITHKISKASVLELSMKPSELKSK 990
Score = 87 (35.7 bits), Expect = 8.0e-17, Sum P(4) = 8.0e-17
Identities = 46/240 (19%), Positives = 103/240 (42%)
Query: 432 TPVSTPAYVTISDVAEEEVR---KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
+PV A +++ D+A+ + +E + GS ++V++ G I K+
Sbjct: 1023 SPV-LKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN 1081
Query: 489 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH-MSEFEI-VKPGKKFKVG 546
+ S +K G + G+V+ + ++ V + + +++F + +K + K+
Sbjct: 1082 M----STIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFEDKIN 1137
Query: 547 AELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
+ VL V ++K+I ++ + K++ + S+ + I G + + G FV
Sbjct: 1138 NVIPTTVLSVDEQNKKIELSLRPATAKTRS--IKSHEDLKQGEIVDGIVKNVNDKGIFVY 1195
Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
V+ F P S+L E Y Q V ++++ SR +S ++ + ++ D
Sbjct: 1196 LSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR---ISLTLRESEINGD 1252
Score = 86 (35.3 bits), Expect = 4.4e-22, Sum P(4) = 4.4e-22
Identities = 45/209 (21%), Positives = 86/209 (41%)
Query: 371 KKVNARILFVDPTSRAVGLTLNP-YLLHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXI 429
+ +++R+L P L+ +P YL + + +G++ +
Sbjct: 472 ENLSSRVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIF 531
Query: 430 PST-PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA-FE 487
S P + ISD + E+K+K GS V+ R++ + + K+ E
Sbjct: 532 NGQFKASVPP-LHISDT---RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587
Query: 488 G----LVFTHSDVKPGMVVKGKVIA-VDSF---GAIVQFPGGVKALCPLPHMSEFEIVKP 539
LV T+ + K K +A + F G I+ F GG+ P +SE + +P
Sbjct: 588 DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647
Query: 540 GKKFKVGAELVFRVLGVKS--KRITVTHK 566
+ ++G ++ ++L V + +RI T K
Sbjct: 648 EEHLRLGQTVIVKLLDVDADRRRIIATCK 676
Score = 85 (35.0 bits), Expect = 3.0e-30, Sum P(4) = 3.0e-30
Identities = 27/107 (25%), Positives = 51/107 (47%)
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
+L +D ++ + LS + + + + + S + +V G V N+ + G FV ++
Sbjct: 1144 VLSVDEQNKKIELSLRPATAKT-RSIKSHED-LKQGEIVDGIVKNVNDKGIFVYLSRKVE 1201
Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
F P SK D + K Y Q V ++ + E RI+L+L++S
Sbjct: 1202 AFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRES 1247
Score = 79 (32.9 bits), Expect = 1.1e-16, Sum P(5) = 1.1e-16
Identities = 29/102 (28%), Positives = 43/102 (42%)
Query: 54 FPRGGGHSLTQRERDEIHAEV--DAEF--EAVERGLHXXXXXXXXXTERKANETVDDLGS 109
FPRGG +LT E ++ E D F E+V+ T +K+ + S
Sbjct: 38 FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97
Query: 110 LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVI 151
D L + N TLKN G L G ++ + ++DL I
Sbjct: 98 ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCI 136
Score = 79 (32.9 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
Identities = 37/149 (24%), Positives = 67/149 (44%)
Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLL-QGV----VRSIDRTRK 292
AY+KSI D G + F F G + + ++ ID+ + Q V +R+ D+ +K
Sbjct: 799 AYIKSISDKGLFVAFN-GKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQK 857
Query: 293 VVYLSSDPDTVS--KCVTKDLKG---ISI---DLLVPGMMVSTRVQSILENGVMLSFLTY 344
+ P K V +++ SI D L G +V +++S+ +N + +
Sbjct: 858 FLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKKNQLNVILAAN 917
Query: 345 FTGTVDIFHLQNTFPT-TNWKNDYNQHKK 372
G VDI + +T+ T+ K + +KK
Sbjct: 918 LHGRVDIAEVFDTYEEITDKKQPLSNYKK 946
Score = 73 (30.8 bits), Expect = 3.0e-30, Sum P(4) = 3.0e-30
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 850 EEKIAM-LQSSKHNGS--ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
+ +I++ L+ S+ NG LK G V EG + DFGV V + +V G
Sbjct: 1237 DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHI 1296
Query: 907 HQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
++A E G ++A +L ++ + LSLK
Sbjct: 1297 TEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLK 1336
Score = 65 (27.9 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
++L + G HITE+ D K E+L + F +G V A I+ K+N P+ K+ L
Sbjct: 1282 VKLDNTVNVTGLAHITEIADKKP---EDLSALFGVGDRVKA-IVLKTN-PEKKQI---SL 1333
Query: 1139 SIKPS 1143
S+K S
Sbjct: 1334 SLKAS 1338
Score = 63 (27.2 bits), Expect = 1.3e-13, Sum P(4) = 1.3e-13
Identities = 40/172 (23%), Positives = 74/172 (43%)
Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHI-----HPNSVVHGYV---CNIIE---TGCFV 779
+N SS +L YS ++ QL +D ++ N + G + C I +G +
Sbjct: 472 ENLSSRVL---GYSPVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIEL 528
Query: 780 R-FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
+ F G+ P D + + + +G V+ ++ VNS G + ++LK+S +
Sbjct: 529 KIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISVNSR-GNVHVTLKKSLVNIE 587
Query: 839 D-----ASFMQEHFLLEEK----IAMLQSSKHNGSELKW---VEGFIIGSVI 878
D S + ++EK +A +Q K NG + + + GF+ S I
Sbjct: 588 DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEI 639
Score = 54 (24.1 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 1063 VGSLVQA-EITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
+G L+ + EIT + + LK G F + ++D + E FKIG V R
Sbjct: 509 IGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPER---KFKIGSKVKGR 565
Query: 1121 IIAKSNKPD----MKKSFL 1135
+I+ +++ + +KKS +
Sbjct: 566 VISVNSRGNVHVTLKKSLV 584
Score = 51 (23.0 bits), Expect = 5.4e-28, Sum P(4) = 5.4e-28
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 1069 AEITEI---KPLELRLKFGIGFHGRIHITEVNDDKSNV 1103
A ITEI KP +L FG+G + + + N +K +
Sbjct: 1294 AHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQI 1331
Score = 50 (22.7 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 31/157 (19%), Positives = 59/157 (37%)
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAI--VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
++ D+ ++ V +++ GA V PG + FE + PG F +G
Sbjct: 247 IYADEDLVKSTSIQCAVKSIEDHGATLDVGLPGFTGFIAK-KDFGNFEKLLPGAVF-LG- 303
Query: 548 ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
+ + I V + K+K+ +SS I I K+G + +
Sbjct: 304 ----NITKKSDRSIVVNTDFSDKKNKITQISSIDAIIPGQIVDLLCESITKNGIAGKVFG 359
Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
V G S L + + +G ++CRI++ +
Sbjct: 360 LVSGVVNVSHLRTFSEEDLKHKFVIGSSIRCRIIACL 396
Score = 43 (20.2 bits), Expect = 1.0e-17, Sum P(4) = 1.0e-17
Identities = 25/123 (20%), Positives = 49/123 (39%)
Query: 476 LATGILKASAFEGLVFTHSDVKP---GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
L + ++K + E L T+ DVK + + + ++ G V F G L +
Sbjct: 768 LKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAV 827
Query: 533 EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS-KLAILSSYAEATDRLIT 589
+ + K F + + +L K+++ ++ K VK K + S+ + D I
Sbjct: 828 DSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIK 887
Query: 590 HGW 592
W
Sbjct: 888 -SW 889
Score = 41 (19.5 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 921 QAAILDVAKAERLVDLSLKTVFIDRFRE 948
Q + ++ KA L + +LKT+ FRE
Sbjct: 1485 QLQLSEIEKARELAERALKTI---NFRE 1509
Score = 41 (19.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 1105 ENLFSNFKIGQTVTARIIA-KSNKPDMKKSFLWEL 1138
E+L F IG ++ RIIA NK K L L
Sbjct: 376 EDLKHKFVIGSSIRCRIIACLENKSGDKVLILSNL 410
Score = 39 (18.8 bits), Expect = 1.0e-24, Sum P(4) = 1.0e-24
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 875 GSVIEGKVHESNDFGVVV 892
G +++G V ND G+ V
Sbjct: 1177 GEIVDGIVKNVNDKGIFV 1194
Score = 39 (18.8 bits), Expect = 2.4e-19, Sum P(5) = 2.4e-19
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNR 399
K ++ + LFV + +GL L Y + +R
Sbjct: 802 KSISDKGLFVAFNGKFIGLVLPSYAVDSR 830
Score = 39 (18.8 bits), Expect = 2.4e-19, Sum P(5) = 2.4e-19
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 442 ISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEG-----LATGILKASAFEGLVFTHS 494
+ D EE K + YK+ ++V+I+G ++ + I KAS E L S
Sbjct: 927 VFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLPITHKISKASVLE-LSMKPS 985
Query: 495 DVK 497
++K
Sbjct: 986 ELK 988
Score = 38 (18.4 bits), Expect = 0.00095, Sum P(4) = 0.00095
Identities = 27/149 (18%), Positives = 48/149 (32%)
Query: 593 ITKIEKHGCFVRF-YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
+ IE HG + G GF + + G P +++ +G + K S + +N
Sbjct: 263 VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKLLPGAVF-LGNITKKSDRSIV-----VN 316
Query: 652 LSFMMKPTRVSE-DXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEH 710
F K ++++ G G + HL E
Sbjct: 317 TDFSDKKNKITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLRTFSEE 376
Query: 711 ATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
K VI + L+N+S + +L
Sbjct: 377 DLKHKFVIGSSIRCRIIACLENKSGDKVL 405
Score = 37 (18.1 bits), Expect = 1.1e-16, Sum P(5) = 1.1e-16
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRIL 468
V +S + L+ K+ GS +R RI+
Sbjct: 365 VNVSHLRTFSEEDLKHKFVIGSSIRCRII 393
>ASPGD|ASPL0000042752 [details] [associations]
symbol:rrp5 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
EMBL:AACD01000034 eggNOG:COG0539 KO:K14792 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 OMA:FYGNVRG RefSeq:XP_659751.1
ProteinModelPortal:Q5BBD3 STRING:Q5BBD3
EnsemblFungi:CADANIAT00008825 GeneID:2875769 KEGG:ani:AN2147.2
Uniprot:Q5BBD3
Length = 1780
Score = 191 (72.3 bits), Expect = 3.7e-21, Sum P(6) = 3.7e-21
Identities = 59/225 (26%), Positives = 106/225 (47%)
Query: 439 YVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 495
+V +S +A+ +V + +K G+ R++G+ ++ L + + D
Sbjct: 483 FVHVSRLADGQVETISSDHGPFKVGTTHEARVVGYSAIDNLYSLSFERKVINQPFLRLED 542
Query: 496 VKPGMVVK---GKVIAVDS--FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
V G VVK KV+ +S G IV G+ P H ++ + P KKF+ G +
Sbjct: 543 VTLGAVVKVTITKVLVGESGVTGLIVSLTDGITGFIPSVHFADTRLQFPEKKFREGLSIT 602
Query: 551 FRVLGVK-SKR-ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
RVL V KR + +T KK+L+ ++ A+ Y + + G I I +G V+FY
Sbjct: 603 ARVLSVNLEKREVRLTLKKSLLNTEAAVWKDYRDILPGAQSPGTIINILPNGAVVQFYGN 662
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
V+G+ SE+ +PS + +GQVV ++ + ++++S
Sbjct: 663 VRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHALNVDASQGKLSVS 707
Score = 182 (69.1 bits), Expect = 5.0e-22, Sum P(4) = 5.0e-22
Identities = 87/431 (20%), Positives = 166/431 (38%)
Query: 170 ILDNEIEANEDNL-LPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWXXXXXXXXXXXX 225
+L+ + +++E+ L F++GQ + V+ + + D K++I
Sbjct: 198 MLEEDEDSDEEEFDLHDYFYLGQYLRTYVVSVGNKSADASSKSKKRIELSIDPRSANTGL 257
Query: 226 XXETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPGLLLQG 282
+ + A V S+EDHG ++ G+ GF+ + + +K G +
Sbjct: 258 QKTDLVVNAAVQASVVSVEDHGLVMDLGIEGTDVRGFMSSKEIDPRTDYSTIKEGSVFLC 317
Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS--IDLLVPGMMVSTRVQSILENGVMLS 340
+V + V+ LS++ + ++ I+ VPG+ + + G++
Sbjct: 318 MVTGQNANGNVIKLSANLQSSGSIKKSHFLSVAPTINSFVPGVAAEILLTDVSSTGMIGK 377
Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTL----NPY 394
+ TVD+ H T+ Y+ K+ RI P S +G ++ +
Sbjct: 378 IMGMLDTTVDLVHSGGATGKTDLTKKYHNGAKIKGRISCTFPGSEPYKIGFSMLDHVQKF 437
Query: 395 LLHNRAPPSH---VKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVR 451
P S + + ++ I ST +V +S +A+ +V
Sbjct: 438 SAEGHGPNSSDDAPAISAVIPEATIVNVDPGLGVYVKIGST--KHMGFVHVSRLADGQVE 495
Query: 452 KLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK---GK 505
+ +K G+ R++G+ ++ L + + DV G VVK K
Sbjct: 496 TISSDHGPFKVGTTHEARVVGYSAIDNLYSLSFERKVINQPFLRLEDVTLGAVVKVTITK 555
Query: 506 VIAVDS--FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITV 563
V+ +S G IV G+ P H ++ + P KKF+ G + RVL V ++ V
Sbjct: 556 VLVGESGVTGLIVSLTDGITGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREV 615
Query: 564 THKKTLVKSKL 574
+ TL KS L
Sbjct: 616 --RLTLKKSLL 624
Score = 161 (61.7 bits), Expect = 8.1e-09, Sum P(4) = 8.1e-09
Identities = 59/257 (22%), Positives = 120/257 (46%)
Query: 312 KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
+ ++ D L GM++ TRV + + V++ G VD+ ++ + F + + Y++++
Sbjct: 1123 ESLTFDDLSVGMVLPTRVTRVTDKQVIMQLNNTLVGAVDLINMADDFSKAD-PHAYHKNE 1181
Query: 372 KVNARILFVDPTSRAVGLTLNPY-LLHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXIP 430
V + I+ VD +R + L+L P +L + P ++ + +Q K
Sbjct: 1182 VVRSCIIGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSM-EQVKVNDIIRGFVRQVSDG 1240
Query: 431 STPVSTP----AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE-GLATGIL 481
V+ A++ ISD+++ +++ + ++ G V+ R+ + L+ L +L
Sbjct: 1241 GLFVTVGHNIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVL 1300
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKALCPLPHMSEFEIVKP 539
S ++ + T D+KPG +V GKV V+ FGA + G V LC M++ +
Sbjct: 1301 DPS-YKAPI-TLYDLKPGQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDA 1358
Query: 540 GKKFKVGAELVFRVLGV 556
++ G + +VL V
Sbjct: 1359 RTLYEEGDAVKAKVLKV 1375
Score = 133 (51.9 bits), Expect = 3.5e-10, Sum P(6) = 3.5e-10
Identities = 83/361 (22%), Positives = 146/361 (40%)
Query: 322 GMMVSTRVQSIL--ENGV---MLSFLTYFTGTVDIFHLQNT---FPTTNWKNDYNQHKKV 373
G +V + +L E+GV ++S TG + H +T FP + + + +
Sbjct: 546 GAVVKVTITKVLVGESGVTGLIVSLTDGITGFIPSVHFADTRLQFP----EKKFREGLSI 601
Query: 374 NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXIPSTP 433
AR+L V+ R V LTL LL+ A DI ++ +
Sbjct: 602 TARVLSVNLEKREVRLTLKKSLLNTEAAVWK-DYRDILPGAQSPGTIINILPNGAVVQFY 660
Query: 434 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG-LATGILKASAFEGLVFT 492
+ ++++S+++E ++ + +K G V V L +G L+ S T
Sbjct: 661 GNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHALNVDASQGKLSVSCRDQSLLADSYRT 720
Query: 493 -HSDVKPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGK---KFKVG 546
++PG V G V +++ GG+ A + +++ K K +VG
Sbjct: 721 AFKTIQPGQSVTGTVFEKSDDYVLLRLEDLGGLVARLGVGQVADGSASKRSSTLSKIRVG 780
Query: 547 AEL-VFRVLGV-KSKR-ITVTHKKTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGC 601
+L VL V ++ R I VT++ +L K+ + S++ + + G+I I G
Sbjct: 781 QKLNELVVLDVHRAHRLIHVTNRASLKKATKEGNMPSTFEDLREGAEVTGFIRNITPTGL 840
Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
FV+F G+ G PR +G + + QVV + S RR LS M P
Sbjct: 841 FVQFLGGLIGLVPRRLVGSEDSNKSEFGKANFQVVSATVHSLDTDFRRFILS--MDPAEA 898
Query: 662 S 662
+
Sbjct: 899 T 899
Score = 125 (49.1 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 66/294 (22%), Positives = 123/294 (41%)
Query: 233 GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS----ID 288
GMVL V + D I+ + G + N+A++ VVRS +D
Sbjct: 1133 GMVLPTRVTRVTDKQVIMQLN-NTLVGAVDLINMADDFSKADPHAYHKNEVVRSCIIGVD 1191
Query: 289 RTRKVVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
+ + ++LS P V S +D + S++ + ++ V+ + + G+ ++
Sbjct: 1192 KANRKIHLSLRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTVGHNIV 1251
Query: 347 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN--RAPPS- 403
+ I L +++ WK+ + + V R+ VDP ++ + ++L +L +AP +
Sbjct: 1252 AFIRISDLSDSY-LKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAPITL 1310
Query: 404 -HVKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGS 461
+K G I K S+ VS + T ++D E+ R L Y+EG
Sbjct: 1311 YDLKPGQIVT-GKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTL---YEEGD 1366
Query: 462 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
V+ ++L +G + LKAS F S G +++DSFG +
Sbjct: 1367 AVKAKVLKVDRDQGKISFGLKASYFNDDAEDESSGNEDSDSDG--VSLDSFGGV 1418
Score = 124 (48.7 bits), Expect = 5.0e-22, Sum P(4) = 5.0e-22
Identities = 35/136 (25%), Positives = 67/136 (49%)
Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD 755
G IP+ H AD + + G ++L ++ E + L+ K SL+N+ + D
Sbjct: 576 GFIPSVHFAD--TRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKKSLLNTEAAVWKD 633
Query: 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 815
I P + G + NI+ G V+F G + G+ S+ + D S+ + +GQ V +
Sbjct: 634 YRDILPGAQSPGTIINILPNGAVVQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVH 693
Query: 816 ILDVNSETGRITLSLK 831
L+V++ G++++S +
Sbjct: 694 ALNVDASQGKLSVSCR 709
Score = 120 (47.3 bits), Expect = 3.7e-21, Sum P(6) = 3.7e-21
Identities = 50/199 (25%), Positives = 94/199 (47%)
Query: 716 SVIKPGYEFDQLLVLDNESSNLLLSA--KYSLINSAQQ--LPSDASHIHPNSVVHGYVCN 771
S I+ G + ++L+VLD ++ L+ + SL + ++ +PS + + V G++ N
Sbjct: 775 SKIRVGQKLNELVVLDVHRAHRLIHVTNRASLKKATKEGNMPSTFEDLREGAEVTGFIRN 834
Query: 772 IIETGCFVRFLGRLTGFAPRSK--AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
I TG FV+FLG L G PR + D +++ K + Q V + + ++++ R LS
Sbjct: 835 ITPTGLFVQFLGGLIGLVPRRLVGSEDSNKSEFGKANF--QVVSATVHSLDTDFRRFILS 892
Query: 830 LKQSCCSSTDASFMQEHFL--LEEKIAMLQSSKHNGSE--LKWVEGFIIGSVIEGKVHES 885
+ + +T A +E +E A S N + LK +G V++ K++
Sbjct: 893 MDPA--EATHAGPKKESTKKSAKETAAAGDESLANPVDETLKAKSDITVGRVLKCKINSV 950
Query: 886 NDFGVVVSFEEHSDVYGFI 904
G ++ + +V G I
Sbjct: 951 K--GTQINVKLADNVQGRI 967
Score = 118 (46.6 bits), Expect = 4.9e-20, Sum P(4) = 4.9e-20
Identities = 28/110 (25%), Positives = 57/110 (51%)
Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG-- 783
++ ++D E+ L +S K S+++ + + P + P +V G V + + G F+ G
Sbjct: 1280 RVTLVDPENKKLQMSLKDSVLDPSYKAPITLYDLKPGQIVTGKVRKVEQFGAFIVIDGSS 1339
Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
++G R++ D + D Y G +V++ +L V+ + G+I+ LK S
Sbjct: 1340 NVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKVDRDQGKISFGLKAS 1389
Score = 88 (36.0 bits), Expect = 2.5e-16, Sum P(5) = 2.5e-16
Identities = 39/164 (23%), Positives = 71/164 (43%)
Query: 727 LLVLDNESSNLLLSAKYSLINSAQ---QLPSDAS--HIHPNSVVHGYVCNIIETGCFVRF 781
++ +D + + LS + S + S+ Q P S + N ++ G+V + + G FV
Sbjct: 1187 IIGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTV 1246
Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
+ F S D + ++ VGQ V+ + V+ E ++ +SLK S D S
Sbjct: 1247 GHNIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVL---DPS 1303
Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
+ L + K + + K ++ VE F VI+G + S
Sbjct: 1304 YKAPITLYDLKPGQIVTGK-----VRKVEQFGAFIVIDGSSNVS 1342
Score = 84 (34.6 bits), Expect = 5.0e-22, Sum P(4) = 5.0e-22
Identities = 25/94 (26%), Positives = 51/94 (54%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTAR 1120
VG +++ +I +K ++ +K GRI ++EV D ++ + +F+ GQ +TA+
Sbjct: 939 VGRVLKCKINSVKGTQINVKLADNVQGRIDVSEVFDSWEDISDKKQPLKHFRPGQVITAK 998
Query: 1121 II----AKSNK--PDMKKS--F-LWELSIKPSML 1145
++ A+S P ++ F ++ELS+KP +
Sbjct: 999 VLGLHDARSYTYLPISHRTGKFNVYELSMKPKFV 1032
Score = 71 (30.1 bits), Expect = 1.0e-20, Sum P(4) = 1.0e-20
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV 927
G ++ GKV + FG + + S+V G ++A VE G ++A +L V
Sbjct: 1316 GQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKV 1375
Query: 928 AKAERLVDLSLKTVFID 944
+ + + LK + +
Sbjct: 1376 DRDQGKISFGLKASYFN 1392
Score = 71 (30.1 bits), Expect = 3.8e-16, Sum P(6) = 3.8e-16
Identities = 25/102 (24%), Positives = 42/102 (41%)
Query: 739 LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-- 796
LS K + + P + S G+V N+ +V + G A D
Sbjct: 1025 LSMKPKFVKADNATPLTIDQVQAGSSSFGFVNNVSNDFFWVSLSPNVRGRLRFIDASDDI 1084
Query: 797 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
AD+ K Y +G +++ + V++E G I LS ++ S T
Sbjct: 1085 SLLADIEKQYPIGCALKFRVTGVDAEKGHIDLSARERSESLT 1126
Score = 66 (28.3 bits), Expect = 5.0e-22, Sum P(4) = 5.0e-22
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 54 FPRGGGHSLTQRERDEIH--AEVDAEFE 79
FPRGGG LT ER +IH A D FE
Sbjct: 58 FPRGGGSVLTPLERKQIHIKATKDVLFE 85
Score = 61 (26.5 bits), Expect = 3.7e-21, Sum P(6) = 3.7e-21
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 311 LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
++G+S LVPG ++ +V SI + + +S TG V + + T
Sbjct: 144 IEGLSFKRLVPGALILGQVSSINAHNIGISLPNNLTGYVPLTSVSKT 190
Score = 61 (26.5 bits), Expect = 8.1e-09, Sum P(4) = 8.1e-09
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-AENSGIDV--KPGL-LLQGV 283
E ++EG +T ++++I G + F L G +PR + +E+S K ++
Sbjct: 820 EDLREGAEVTGFIRNITPTGLFVQF-LGGLIGLVPRRLVGSEDSNKSEFGKANFQVVSAT 878
Query: 284 VRSIDRTRKVVYLSSDP 300
V S+D + LS DP
Sbjct: 879 VHSLDTDFRRFILSMDP 895
Score = 55 (24.4 bits), Expect = 2.3e-18, Sum P(5) = 2.3e-18
Identities = 24/120 (20%), Positives = 50/120 (41%)
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
+SC D + + H L + S E+ +E + +I G V + +D G+
Sbjct: 1184 RSCIIGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLF 1243
Query: 892 VSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFID 944
V+ H+ + FI L+ + ++ G +++ + V + + +SLK +D
Sbjct: 1244 VTVG-HN-IVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLD 1301
Score = 54 (24.1 bits), Expect = 1.1e-06, Sum P(6) = 1.1e-06
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
K EGL F + PG ++ G+V ++++ + P + PL +S+
Sbjct: 140 KGVRIEGLSFKR--LVPGALILGQVSSINAHNIGISLPNNLTGYVPLTSVSK 189
Score = 50 (22.7 bits), Expect = 3.7e-21, Sum P(6) = 3.7e-21
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
H + ++D + ++ +F++GQ V R+ P+ KK ++S+K S+L
Sbjct: 1248 HNIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVD--PENKKL---QMSLKDSVL 1300
Score = 50 (22.7 bits), Expect = 7.4e-14, Sum P(5) = 7.4e-14
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
A D +AD Y+ + VRS I+ V+ +I LSL+ S
Sbjct: 1166 ADDFSKAD-PHAYHKNEVVRSCIIGVDKANRKIHLSLRPS 1204
Score = 48 (22.0 bits), Expect = 2.4e-07, Sum P(6) = 2.4e-07
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 630 YHVGQVVKCRIMSSIPASRRINLSFMM 656
YH G +K RI + P S + F M
Sbjct: 404 YHNGAKIKGRISCTFPGSEPYKIGFSM 430
Score = 46 (21.3 bits), Expect = 3.7e-21, Sum P(6) = 3.7e-21
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 999 YASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
+ S D + +K P K F GQ + A V+ L
Sbjct: 973 FDSWEDISDKKQPLKHFRPGQVITAKVLGL 1002
Score = 44 (20.5 bits), Expect = 5.8e-21, Sum P(6) = 5.8e-21
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 919 VIQAAILDVAKAERLVDLSLK 939
V+++ I+ V KA R + LSL+
Sbjct: 1182 VVRSCIIGVDKANRKIHLSLR 1202
Score = 41 (19.5 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G+ V I I P L ++F G G + V + SN E +NF Q V+A +
Sbjct: 825 GAEVTGFIRNITPTGLFVQFLGGLIGLVPRRLVGSEDSNKSEFGKANF---QVVSATV-- 879
Query: 1124 KSNKPDMKKSFLWELSIKPSMLT 1146
S D ++ F+ LS+ P+ T
Sbjct: 880 HSLDTDFRR-FI--LSMDPAEAT 899
Score = 39 (18.8 bits), Expect = 5.5e-19, Sum P(6) = 5.5e-19
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 431 STPVSTPAYVTISDVAEEEVRKLEKKYKE 459
S P + YV ++ V++ K+EK +E
Sbjct: 173 SLPNNLTGYVPLTSVSKTLESKIEKMLEE 201
Score = 39 (18.8 bits), Expect = 4.3e-13, Sum P(6) = 4.3e-13
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 620 LDPGCEPSSMYHVGQVVKCRIMS 642
+D + S VG+V+KC+I S
Sbjct: 927 VDETLKAKSDITVGRVLKCKINS 949
Score = 37 (18.1 bits), Expect = 7.1e-20, Sum P(6) = 7.1e-20
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGI 1085
Y+ G V+A++ ++ + ++ FG+
Sbjct: 1362 YEEGDAVKAKVLKVDRDQGKISFGL 1386
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(6) = 2.5e-06
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
R EL +DP + + VV + +S+
Sbjct: 243 RIELSIDPRSANTGLQKTDLVVNAAVQASV 272
>FB|FBgn0039182 [details] [associations]
symbol:CG5728 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 EMBL:AE014297 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000381 InterPro:IPR022967
SMART:SM00316 eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
EMBL:AY061461 RefSeq:NP_651245.1 UniGene:Dm.1316 SMR:Q9VC94
STRING:Q9VC94 EnsemblMetazoa:FBtr0084632 GeneID:42899
KEGG:dme:Dmel_CG5728 UCSC:CG5728-RA FlyBase:FBgn0039182
InParanoid:Q9VC94 OMA:NEKSFPR OrthoDB:EOG4JQ2CH GenomeRNAi:42899
NextBio:831166 Uniprot:Q9VC94
Length = 1430
Score = 232 (86.7 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 187/887 (21%), Positives = 342/887 (38%)
Query: 98 RKANETVDDLGSLFGDGISGKLPRY-ANKITLKNISAGMKLWGVVAEVNEKDLVICX--- 153
+KA + ++L S + +G+L + A + + + M + GVV E+ L I
Sbjct: 37 KKAPKVKENLLSYETEEQNGQLEAFSAETLNMDTLQEDMLVMGVVKELTATALQIALPGR 96
Query: 154 XXXXXXXXXXXXXXXXILDNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRK 211
+ + + +E + L +F +G++V ++ + K + G+
Sbjct: 97 MFARTLVADISDAYTRVAKAAMSGDTSEYHDLTELFQLGRIVYGKAIKTE--KLDTGRVS 154
Query: 212 IWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSG 271
+ +++++G + + V +HGY++ G+ F+P A+
Sbjct: 155 LLLSLKPADVHGNLHHKSIKKGFIFSGAVAEALEHGYVIESGVQGLQAFVPCEKPAQKLH 214
Query: 272 IDVKPGLLLQGVVRSIDR-TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQ 330
+ L ++ V + T V + D + K ++D ++PG +V +V
Sbjct: 215 VGQLAFLKVKTVHHDTHQSTCTCVQVEQDQLRI-----KSQNETNLDYILPGSIVKFKVA 269
Query: 331 SILENGVMLSFLTY-FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 389
L++G+ S + F+ V+ HL N T + Y ++ NAR+L+V P ++ V L
Sbjct: 270 KHLKDGLKGSIMNESFSAYVNEHHLANALDTLD---AYELNEDYNARVLYVMPLTKLVYL 326
Query: 390 TLNPYLLHNRAPPSH----------VKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAY 439
TLN + A +KVG + +++K + +Y
Sbjct: 327 TLNLDIKTGAAVAKDQDEEEQEVEPIKVGSVVEKAKVLRLGSGGVVLL-LNKKLKGIISY 385
Query: 440 VTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
+I + K E KY + +VRILG+ +E L + +F D+
Sbjct: 386 GSIRGNFKGNYDKDEVLSKYGRKTKHKVRILGYDVIESLYYCSDDPNVVNEKLFCLEDIN 445
Query: 498 PGMVVKGKVIAVDSF--GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
G +V K+ D G V+ G V + + +F + P ++ VG L RVL
Sbjct: 446 AGDLVTAKIFKKDDKIKGWSVRI-GKVNGI-----LEQFYLA-PNVRYDVGQSLKCRVLE 498
Query: 556 VKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
V ++R V+++ + + IL+ YA A + G + + E V+F NG++G
Sbjct: 499 VNAERKICYVSNRAEYLGKGIKILTDYASAHVGNVYMGTVVRCEDTYVLVKFGNGIKGVL 558
Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL---SFMMK---PTRVSEDXXX 667
R L E SS + GQ K RI++ + L F + P ++
Sbjct: 559 HRQNLK-----ENSSFFE-GQTTKFRILTRNKDQITLTLPEDKFQLGEICPVEITNALDA 612
Query: 668 XXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 727
+ + G IP L+DHLE V G D
Sbjct: 613 GLEVKITFAAEDDEEDEDGNPKLEEFV--GLIPLRLLSDHLELLHAQMRVHPAGSYTDAA 670
Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
++ N S L Y + QL D + ++ YV + T V + +
Sbjct: 671 CIMQNIFS--LRDVPYF----SGQLTKDWQSVQVGDIIRSYVKHA--TDQVVDLMVCVRN 722
Query: 788 F-APRSKAVDGQRADLSKTYYVG----QSVRSNILDVNSETGRITLSLKQSCCSS---TD 839
+ P V R + K V Q + +L ET +T+S K + S +D
Sbjct: 723 YNKPVKVHVKMLRLNAVKNAPVELVPEQLLWVKVLSKEVETKTLTVSAKLTDVWSGDLSD 782
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSE--LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
+ + E +L E +A +++ S K+ G I V +G +ND+ V + E +
Sbjct: 783 TAKLVEGYLNE--VAQIKAGLEEASAPISKYSVGEKINVVFKGIDATTNDW--VYTVEGN 838
Query: 898 SDVYGFITHHQLAGATV-ESGSVIQAAILDVAKAERLVDLSLKTVFI 943
V + + A E GS +A IL + + ++ +S K + I
Sbjct: 839 GKVSALLLSSLVGTAKAPEMGSKHEAVILWIEYSSDVLLISNKKLDI 885
Score = 37 (18.1 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 1100 KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSF 1134
K+ VVE + + K Q +T I+ + K + K F
Sbjct: 1035 KAEVVEKITNGQKKTQPLTNGIVKEKPKQNGKLFF 1069
>TIGR_CMR|SO_2402 [details] [associations]
symbol:SO_2402 "ribosomal protein S1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000044052
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
RefSeq:NP_717992.1 ProteinModelPortal:Q8EEI0 SMR:Q8EEI0
GeneID:1170119 KEGG:son:SO_2402 PATRIC:23524423 Uniprot:Q8EEI0
Length = 555
Score = 190 (71.9 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 84/344 (24%), Positives = 140/344 (40%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+++ G VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 188 NLQEGQAVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246
Query: 555 GVKSKRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
+R V+ K L + L I Y E T +T G +T + +GCFV GV+G
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPENTK--LT-GRVTNLTDYGCFVEIEEGVEGL 303
Query: 613 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXX 671
SE+ + PS + ++G V+ ++ RRI+L T +D
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNK 363
Query: 672 XXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
G G + HL+D + T +V K G E +++
Sbjct: 364 GDKVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNGTGEDAVSEYKKGDEIHAVVL 420
Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
+D E + L K + + +D ++VHG V + G V + G+
Sbjct: 421 SVDPERERISLGVKQTEDDPFNAYLADKKK---GTIVHGTVSAVDAKGVTVELADTVEGY 477
Query: 789 APRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
R + +R D S Y VG ++ + + V+ + I+LS+K
Sbjct: 478 I-RVADISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIK 520
Score = 133 (51.9 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 79/361 (21%), Positives = 152/361 (42%)
Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
A FE + T + +PG +V+G V+A+++ +V G+K+ P+P +F+ + +
Sbjct: 6 ADLFEQSLQT-LEFRPGSIVRGTVVAIEN--GMVLVDAGLKSESPIP-AEQFKNAQGVLE 61
Query: 543 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
VG E+ + V+ ++ +K +L E + +I G I K G
Sbjct: 62 IAVGDEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI--GIINGKVKGG 119
Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMM 656
V NG++ F P S + + P + + + + +V+K + +++ SRR + +
Sbjct: 120 FTVEL-NGIRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRR---AVIE 175
Query: 657 KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATVMK 715
+ D + G G + +A ++H +
Sbjct: 176 SESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPS--- 232
Query: 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNII 773
++ G E + ++L D E + + L K + L + S +P N+ + G V N+
Sbjct: 233 EIVNVGDEINVKVLKYDRERTRVSLGLKQ--LGEDPWL--EISKRYPENTKLTGRVTNLT 288
Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLK 831
+ GCFV + G S+ +D ++ SK +G V +LD++ E RI+L LK
Sbjct: 289 DYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLK 347
Query: 832 Q 832
Q
Sbjct: 348 Q 348
Score = 123 (48.4 bits), Expect = 0.00068, P = 0.00068
Identities = 42/165 (25%), Positives = 79/165 (47%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK----KFKVGAELVFRVL 554
G V GK+ ++ FG + GG+ L H+S+ G+ ++K G E+ VL
Sbjct: 364 GDKVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNGTGEDAVSEYKKGDEIHAVVL 420
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
V + +RI++ K+T A L+ + T I HG ++ ++ G V + V+G+
Sbjct: 421 SVDPERERISLGVKQTEDDPFNAYLADKKKGT---IVHGTVSAVDAKGVTVELADTVEGY 477
Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
+++ + + S++Y VG ++ + M +R I+LS K
Sbjct: 478 IRVADISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIKAK 522
Score = 58 (25.5 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVY---GFITHHQLAGA-TVES-GSVIQAAILDVAK 929
G+++ G V + GV V + + Y I+ ++ A TV S G I+A + V +
Sbjct: 451 GTIVHGTVSAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYSVGDAIEAKFMGVDR 510
Query: 930 AERLVDLSLK 939
R + LS+K
Sbjct: 511 KNRSISLSIK 520
Score = 52 (23.4 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
Y+ G V +I I + + G G +H+++++ + + E+ S +K G + A
Sbjct: 361 YNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTG--EDAVSEYKKGDEIHAV 418
Query: 1121 IIA 1123
+++
Sbjct: 419 VLS 421
Score = 51 (23.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 20/79 (25%), Positives = 31/79 (39%)
Query: 875 GSVIEGKVHESNDFGVVVSFEE------H-SDVYGFITHHQLAGATVESGSVIQAAILDV 927
G + GK+ DFG+ + + H SD+ T A + + G I A +L V
Sbjct: 364 GDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGED-AVSEYKKGDEIHAVVLSV 422
Query: 928 AKAERLVDLSLKTVFIDRF 946
+ L +K D F
Sbjct: 423 DPERERISLGVKQTEDDPF 441
>WB|WBGene00002850 [details] [associations]
symbol:let-716 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0040010 GO:GO:0008406 GO:GO:0002119
GO:GO:0003723 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0007276
InterPro:IPR022967 SMART:SM00316 EMBL:FO080367 eggNOG:COG0539
KO:K14792 GeneTree:ENSGT00390000012228 PIR:E88481
RefSeq:NP_498398.1 ProteinModelPortal:Q18038 SMR:Q18038
STRING:Q18038 PaxDb:Q18038 EnsemblMetazoa:C16A3.3 GeneID:175906
KEGG:cel:CELE_C16A3.3 CTD:175906 WormBase:C16A3.3
HOGENOM:HOG000018736 InParanoid:Q18038 OMA:NMEVAYG NextBio:890242
Uniprot:Q18038
Length = 1743
Score = 188 (71.2 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 114/534 (21%), Positives = 213/534 (39%)
Query: 134 GMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILDNEIEANEDNL-LPTIFHVGQL 192
G+ +GVV+EV + +++ E+ NE+ + + F +GQ+
Sbjct: 72 GLTGFGVVSEVFDDGVLLHTAGTHTVKIHASEVSKKF--TEL-FNEEKIEIKNAFQLGQM 128
Query: 193 VSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIEDHGYILHF 252
V V+ K+ K K+ + G+VL V SIE+ G IL
Sbjct: 129 VPFRVIS---KKQGNDKGKVKGTCNPARLNKHLSPNMLAAGLVLHTAVVSIEEKGAILDV 185
Query: 253 GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK 312
GL TGF+ ++ +G+ K G+ L +VR + T +VV ++S + + +T K
Sbjct: 186 GLDQITGFIEKSQFPA-AGL--KEGMPL--IVRVLSSTSRVVKVTSFVEQDNLNMTSCEK 240
Query: 313 GISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
+ ++ L+PG ++ + GV+++ G I +N P +N K
Sbjct: 241 -LQLNHLMPGTILECEPTGDAVTAGVIVNI---GNGLKGILPRRNLPPRLR-ENPEKLGK 295
Query: 372 KVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVGDIYDQSKXXXXXXXXXXX 426
+ A ++F S+ + L +P + + R + +GD +
Sbjct: 296 AIRAIVMFCQQNSKILVLNAHPDIVAASRIEKRTSFEGISIGDKVKCTVIDVLPTKSMVY 355
Query: 427 XXIPSTPVSTPAYVTISDVAE-EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA 485
+P+ +S E+ ++ +Y+ G+ R+ GFR+ + T +
Sbjct: 356 FALPAIDGKKSLVTAVSSRGLLEKPDQVSTEYEVGTEKLCRVTGFRYADRSITISTRKDI 415
Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--F 543
+ + D K G V+ +V V G VKA PL +S+ + K +
Sbjct: 416 LNQKITKYQDAKCGDVLDARVHHVAKSGVYFMVCNFVKAFAPLSMLSDKPLPAQKMKNIY 475
Query: 544 KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
KVG E+ RV + + K + VT +++++ K ++S E + I K+ G
Sbjct: 476 KVGTEVKCRVWQICDERKNLIVTCRESILGLKSPSVNSVQELEIGVTVPCVIRKVFPTGV 535
Query: 602 FVR-FYNGVQGFAPRSELGLD-PGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
+ +N + G R E + PG ++ + V V K + R +N S
Sbjct: 536 LLLGTFNNICGVL-RKESAVHLPGTPKNNDFVVANVEKIEDNRVVFVLRDVNPS 588
Score = 64 (27.6 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 38/153 (24%), Positives = 67/153 (43%)
Query: 751 QLPSDASHIHPNSVVHGYVCNII-ETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTYYV 808
+LP + V+ G V +I G FV +G +G K ++ + A + S+ V
Sbjct: 702 KLPKKIDELKVGKVIVGIVGQVITNVGVFVELVGG-SGLV--GKVLERKNAKNTSELLEV 758
Query: 809 GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
GQ + I +++ T + S C+ + E L + + +L+S E+KW
Sbjct: 759 GQVIVGTIESIDT-TKK---SFLIDPCTDLETG---ELMLKKYALPLLESIVE---EVKW 808
Query: 869 V---EGFII-GSVIEGKVHESNDFGVVVSFEEH 897
+ + I GS + GKV + D +V FE +
Sbjct: 809 LAEQSNYPIPGSKVNGKVTKELDDLTLVEFEHN 841
Score = 57 (25.1 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 27/108 (25%), Positives = 48/108 (44%)
Query: 731 DNESSNLLLSAKY------SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL-- 782
D E+ L+L KY S++ + L +++ P S V+G V ++ V F
Sbjct: 783 DLETGELMLK-KYALPLLESIVEEVKWLAEQSNYPIPGSKVNGKVTKELDDLTLVEFEHN 841
Query: 783 GR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
G+ + G P K VD ++ KT + ++D+N T + L+
Sbjct: 842 GKKIAGILP--KMVDDKKTT-EKTKKKKATKSFIVVDINHSTNEVVLA 886
Score = 49 (22.3 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 14/70 (20%), Positives = 30/70 (42%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV---VENLFSNFKIGQTV 1117
+++G+ V + + +RLK G + T + D + EN ++ K+ V
Sbjct: 1191 FEIGASVTGRVFFVSKTYIRLKLSSGQQAVLTPTAITDKYETIEKITENQLTDGKLVDVV 1250
Query: 1118 TARIIAKSNK 1127
A++ K +
Sbjct: 1251 CAKLQEKPRR 1260
Score = 46 (21.3 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 49/259 (18%), Positives = 86/259 (33%)
Query: 856 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVY-GFITHHQLAG-- 911
+Q+ K S L + + IG V+ K +N + E + V+ G I+ L+
Sbjct: 1089 IQAGKVRASNLSYKSNYKIGDVV--KCFGANTMTEKQELKVEVNPVWTGTISRENLSDDL 1146
Query: 912 -ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGV 970
T G ++ A+ K E K +DR ++G
Sbjct: 1147 KVTAADGGIVDLAL---KKGEMR---EAKITAVDR-----KNMSLKLTLDTAEEAFEIGA 1195
Query: 971 HQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSD-YNT-QKFPQKQFLNGQSVIATVMA 1027
+V V V + Y+ L L ++ +++D Y T +K + Q +G+ V
Sbjct: 1196 --SVTGRVFFVSKTYIRLKLSSGQQAVLTPTAITDKYETIEKITENQLTDGKLVDVVCAK 1253
Query: 1028 LPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLKFGIGF 1087
L ++L + G + L ++ G G
Sbjct: 1254 LQEKPRRYFVVLKNRFNSKSTDAKRQLLLDSKLMKEGDQYDGIVENASKGSLFIELGPGV 1313
Query: 1088 HGRIHITEVNDDKSNVVEN 1106
GRI + E N D + N
Sbjct: 1314 SGRIPVNEENQDLLEIGTN 1332
Score = 39 (18.8 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 914 VESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
+ + SVI+ ++ VAK E + L L + I ++
Sbjct: 1329 IGTNSVIRVTVVKVAKNE--ITLKLDDILIRKW 1359
Score = 39 (18.8 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 628 SMYHVGQVVKC 638
S Y +G VVKC
Sbjct: 1103 SNYKIGDVVKC 1113
>TIGR_CMR|CPS_2335 [details] [associations]
symbol:CPS_2335 "ribosomal protein S1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 RefSeq:YP_269055.1 ProteinModelPortal:Q482G3
SMR:Q482G3 STRING:Q482G3 GeneID:3519189 KEGG:cps:CPS_2335
PATRIC:21467761 BioCyc:CPSY167879:GI48-2400-MONOMER Uniprot:Q482G3
Length = 553
Score = 171 (65.3 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 81/340 (23%), Positives = 139/340 (40%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G VKG V + +GA V GG+ L + M+ + P + VG E+ +VL
Sbjct: 192 GQEVKGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVKHPSEIVNVGDEIQVKVLKFDR 250
Query: 559 KRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
+R V+ K L + +AI + Y E + +L G +T + +GCFV GV+G S
Sbjct: 251 ERTRVSLGMKQLGEDPWVAIANRYPEGS-KL--SGRVTNLTDYGCFVEIQEGVEGLVHVS 307
Query: 617 ELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXX 675
E+ + PS + ++G V+ ++ RRI+L +K ++
Sbjct: 308 EMDWTNKNIHPSKVVNLGDTVEVLVLEIDEERRRISLG--LKQC-IANPWEEFAKNFNKG 364
Query: 676 XXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV-LDN 732
I G G HL+D + A ++V K G E D +++ +D
Sbjct: 365 DKVSGKIKSITDFGIFIGLDGGIDGLVHLSD-ISWAGGEEAVRDYKKGDEIDAIVLQVDP 423
Query: 733 ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792
E + L K + + +D ++V G V + G + + G+ R
Sbjct: 424 ERERISLGVKQAEDDPFNMYLADKKK---GAIVTGKVTEVDAKGATILLAESVEGYL-RV 479
Query: 793 KAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+ +R D S VG V + + V+ + I+LS+K
Sbjct: 480 SDISVERIEDASTVLKVGDDVEARFMGVDRKNRTISLSIK 519
Score = 51 (23.0 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
+ +PG +++G ++AV+ IV G+K+
Sbjct: 17 ETRPGSIIRGTIVAVNKDNVIVD--AGLKS 44
>TIGR_CMR|CBU_0528 [details] [associations]
symbol:CBU_0528 "ribosomal protein S1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 eggNOG:COG0539 RefSeq:NP_819560.2
ProteinModelPortal:Q83E09 SMR:Q83E09 PRIDE:Q83E09 GeneID:1208413
KEGG:cbu:CBU_0528 PATRIC:17929757 HOGENOM:HOG000044052 KO:K02945
OMA:QLGQDPW ProtClustDB:PRK06299 BioCyc:CBUR227377:GJ7S-531-MONOMER
TIGRFAMs:TIGR00717 Uniprot:Q83E09
Length = 551
Score = 142 (55.0 bits), Expect = 5.7e-09, Sum P(4) = 5.7e-09
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+++ G +KG + + +GA V GGV L + M+ + P VG E+ +VL
Sbjct: 184 ELQEGQEIKGVIKNITDYGAFVDL-GGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVL 242
Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
KR+++ K+ L A + R+ G +T I +GCFV+ GV+G
Sbjct: 243 KFDRDKKRVSLGMKQ-LADDPWAKIERRYPVNSRVF--GKVTNITDYGCFVKLEEGVEGL 299
Query: 613 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
SEL + PS + G+ V+ ++ RRI+L
Sbjct: 300 VHTSELDWTNKNIHPSKVVQSGEEVEVMVLEIDEERRRISL 340
Score = 116 (45.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 71/344 (20%), Positives = 133/344 (38%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
K G +VKG +I G V V+A P + + PG + E+ F+++ +
Sbjct: 99 KAGEMVKGVIIERVKGGFTVDL-NSVRAFLPGSLVDVKPVRDPG--YLEDKEIDFKIIKM 155
Query: 557 KSKRITVT-HKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
+R V ++ +++++ + + E + G I I +G FV GV G
Sbjct: 156 DQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDL-GGVDGLL 214
Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDXXXXXXXX 672
+++ PS + +VG V +++ +R++L + ++
Sbjct: 215 HITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNS 274
Query: 673 XXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
+ +G +G + T L D V++ G E + +L +D
Sbjct: 275 RVFGKVTNITDYGCFVKLEEGV-EGLVHTSEL-DWTNKNIHPSKVVQSGEEVEVMVLEID 332
Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
E + L K N Q+ H + + G V +I + G F+ G + G
Sbjct: 333 EERRRISLGIKQCKRNPWQEFAE--KH-EKDEKITGKVRSITDFGMFIGLEGDIDGLVHL 389
Query: 792 SK---AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
S G+ A + Y G V++ IL ++ E RI+L +KQ
Sbjct: 390 SDISWTESGEEA--IRNYKKGDEVQAVILGIDPERERISLGIKQ 431
Score = 103 (41.3 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDV 819
NS V G V NI + GCFV+ + G S+ +D ++ SK G+ V +L++
Sbjct: 273 NSRVFGKVTNITDYGCFVKLEEGVEGLVHTSE-LDWTNKNIHPSKVVQSGEEVEVMVLEI 331
Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 853
+ E RI+L +KQ C + F ++H +EKI
Sbjct: 332 DEERRRISLGIKQ-CKRNPWQEFAEKHEK-DEKI 363
Score = 71 (30.1 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 42/148 (28%), Positives = 65/148 (43%)
Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
A FE + T +D++PG +VK V+ V IV G+K+ +P SEF +P
Sbjct: 6 AELFEKSL-TETDLRPGALVKATVVEVRPDRVIVN--AGLKSEGIIP-ASEFRNEEP--- 58
Query: 543 FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK---IEK- 598
VG E F V+ T L + K +++E ++ G + K IE+
Sbjct: 59 -HVGDEF-FVVIEASDNGFGETR---LSREKARRAKAWSEL-EKAYKAGEMVKGVIIERV 112
Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEP 626
G F N V+ F P S + + P +P
Sbjct: 113 KGGFTVDLNSVRAFLPGSLVDVKPVRDP 140
Score = 60 (26.2 bits), Expect = 5.7e-09, Sum P(4) = 5.7e-09
Identities = 14/67 (20%), Positives = 33/67 (49%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
YD +++QA++ E++ + L+ G++ + + D+ V++L +G V +
Sbjct: 444 YDKDAVIQAKVKEVESKQAVLELADQVLGQMRLADYTYDR---VKDLTQELNVGDEVAVK 500
Query: 1121 IIAKSNK 1127
I+ K
Sbjct: 501 IVNVDRK 507
Score = 59 (25.8 bits), Expect = 5.7e-09, Sum P(4) = 5.7e-09
Identities = 22/78 (28%), Positives = 33/78 (42%)
Query: 878 IEGKVHESNDFGVVVSFEE------H-SDVYGFITHHQLAGATVESGSVIQAAILDVAKA 930
I GKV DFG+ + E H SD+ + + A + G +QA IL +
Sbjct: 363 ITGKVRSITDFGMFIGLEGDIDGLVHLSDI-SWTESGEEAIRNYKKGDEVQAVILGIDPE 421
Query: 931 ERLVDLSLKTVFIDRFRE 948
+ L +K + D F E
Sbjct: 422 RERISLGIKQLEGDPFME 439
Score = 49 (22.3 bits), Expect = 5.8e-06, Sum P(3) = 5.8e-06
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 866 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-----THHQLAGATVES--GS 918
+++VE + +VI+ KV E V+ + V G + T+ ++ T E G
Sbjct: 438 MEFVESYDKDAVIQAKVKEVESKQAVLELADQ--VLGQMRLADYTYDRVKDLTQELNVGD 495
Query: 919 VIQAAILDVAKAERLVDLSLKTV 941
+ I++V + RL+++S K V
Sbjct: 496 EVAVKIVNVDRKNRLINVSHKAV 518
Score = 42 (19.8 bits), Expect = 5.7e-09, Sum P(4) = 5.7e-09
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 452 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 498
+LEK YK G V+ I+ R G + AF L + DVKP
Sbjct: 93 ELEKAYKAGEMVKGVIIE-RVKGGFTVDLNSVRAF--LPGSLVDVKP 136
Score = 40 (19.1 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGI 1085
Y G VQA I I P R+ GI
Sbjct: 405 YKKGDEVQAVILGIDPERERISLGI 429
Score = 37 (18.1 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 801 DLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
DL++ VG V I++V+ + I +S K
Sbjct: 486 DLTQELNVGDEVAVKIVNVDRKNRLINVSHK 516
>UNIPROTKB|P0AG67 [details] [associations]
symbol:rpsA "30S ribosomal subunit protein S1"
species:83333 "Escherichia coli K-12" [GO:2000766 "negative
regulation of cytoplasmic translation" evidence=IEP;IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006412
"translation" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003729 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 PDB:2BH8 PDBsum:2BH8 GO:GO:0022627
GO:GO:2000766 EMBL:X04864 EMBL:X00785 EMBL:V00352 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 EMBL:V00342 PIR:F64830 RefSeq:NP_415431.1
RefSeq:YP_489183.1 PDB:2KHI PDB:2KHJ PDBsum:2KHI PDBsum:2KHJ
ProteinModelPortal:P0AG67 SMR:P0AG67 DIP:DIP-35884N IntAct:P0AG67
MINT:MINT-1315122 PhosSite:P010447 SWISS-2DPAGE:P0AG67 PaxDb:P0AG67
PRIDE:P0AG67 EnsemblBacteria:EBESCT00000004097
EnsemblBacteria:EBESCT00000004098 EnsemblBacteria:EBESCT00000004099
EnsemblBacteria:EBESCT00000017224 GeneID:12934066 GeneID:945536
KEGG:ecj:Y75_p0883 KEGG:eco:b0911 PATRIC:32117035 EchoBASE:EB0893
EcoGene:EG10900 BioCyc:EcoCyc:EG10900-MONOMER
BioCyc:ECOL316407:JW0894-MONOMER EvolutionaryTrace:P0AG67
Genevestigator:P0AG67 Uniprot:P0AG67
Length = 557
Score = 171 (65.3 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 82/343 (23%), Positives = 139/343 (40%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+++ GM VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 188 NLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 246
Query: 555 GVKSKRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
+R V+ K L + +AI Y E T +T G +T + +GCFV GV+G
Sbjct: 247 KFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTK--LT-GRVTNLTDYGCFVEIEEGVEGL 303
Query: 613 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXX 671
SE+ + PS + +VG VV+ ++ RRI+L +K + +
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLG--LKQCKANP-WQQFAET 360
Query: 672 XXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 729
I G G HL+D + ++V K G E +++
Sbjct: 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVL 420
Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
+D E + L K + + + ++V G V + G V + G+
Sbjct: 421 QVDAERERISLGVKQL---AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGY 477
Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
S+A + D + VG V + V+ + I+LS++
Sbjct: 478 LRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 520
Score = 92 (37.4 bits), Expect = 3.7e-05, Sum P(4) = 3.7e-05
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETG 824
G V N+ + GCFV + G S+ +D ++ SK VG V +LD++ E
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 340
Query: 825 RITLSLKQSCCSSTDASFMQEH 846
RI+L LKQ C ++ F + H
Sbjct: 341 RISLGLKQ-CKANPWQQFAETH 361
Score = 79 (32.9 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 29/112 (25%), Positives = 53/112 (47%)
Query: 723 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVR 780
EF +++ LD + +N+++S + ++I S D ++ V G V N+ + G FV
Sbjct: 153 EF-KVIKLDQKRNNVVVSRR-AVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVD 210
Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
LG + G + + S+ VG + +L + E R++L LKQ
Sbjct: 211 -LGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQ 261
Score = 76 (31.8 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 31/131 (23%), Positives = 62/131 (47%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 555 GVKS---KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
V+ + + K ++ + + +Y +A +T G I K G V NG++
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDA--ETVT-GVINGKVKGGFTVEL-NGIRA 129
Query: 612 FAPRSELGLDP 622
F P S + + P
Sbjct: 130 FLPGSLVDVRP 140
Score = 69 (29.3 bits), Expect = 3.7e-05, Sum P(4) = 3.7e-05
Identities = 33/155 (21%), Positives = 64/155 (41%)
Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
V+ GKV G V+ G++A P + + V+ + G EL F+V+ + KR
Sbjct: 111 VINGKVKG----GFTVEL-NGIRAFLP-GSLVDVRPVRDTLHLE-GKELEFKVIKLDQKR 163
Query: 561 --ITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
+ V+ + + A E + + G + + +G FV GV G ++
Sbjct: 164 NNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITD 222
Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
+ PS + +VG + +++ R++L
Sbjct: 223 MAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Score = 65 (27.9 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 875 GSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVA 928
G+ + G+V D+G V EE H + + V G V++ +LD+
Sbjct: 277 GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDID 336
Query: 929 KAERLVDLSLK 939
+ R + L LK
Sbjct: 337 EERRRISLGLK 347
Score = 60 (26.2 bits), Expect = 3.7e-05, Sum P(4) = 3.7e-05
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSD--VYGFITHHQLAGATV----ESGSVIQAAILDV- 927
G +EGK+ DFG+ + + D V+ +AG + G I A +L V
Sbjct: 364 GDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVD 423
Query: 928 AKAERLVDLSLKTVFIDRF 946
A+ ER + L +K + D F
Sbjct: 424 AERER-ISLGVKQLAEDPF 441
Score = 47 (21.6 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 272 IDVKPGLLLQGVVRSIDR 289
I+ +PG +++GVV +ID+
Sbjct: 16 IETRPGSIVRGVVVAIDK 33
Score = 44 (20.5 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 11/62 (17%), Positives = 29/62 (46%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
++ G V+ +I I + + G G +H+++++ + + E +K G + A
Sbjct: 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAG--EEAVREYKKGDEIAAV 418
Query: 1121 II 1122
++
Sbjct: 419 VL 420
>UNIPROTKB|Q9KQT3 [details] [associations]
symbol:VC_1915 "30S ribosomal protein S1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
PIR:B82141 RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 162 (62.1 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 82/342 (23%), Positives = 133/342 (38%)
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
++ G VKG V + +GA V GGV L + M+ + P + VG E++ +VL
Sbjct: 189 LQEGTEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLK 247
Query: 556 VKSKRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
R V+ K L + +AI Y E +L G +T + +GCFV GV+G
Sbjct: 248 FDRDRTRVSLGLKQLGEDPWVAIAKRYPEG-HKL--SGRVTNLTDYGCFVEIEEGVEGLV 304
Query: 614 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXX 672
SE+ + PS + +VG V+ ++ RRI+L +K + +
Sbjct: 305 HVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLG--LKQCKANP-WQSFAEAQ 361
Query: 673 XXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL-LV 729
I G G HL+D + ++V K G E + L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLA 421
Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
+D E + L K + SD ++V+G V + G + + G+
Sbjct: 422 VDAERERISLGIKQMENDPFNAYVSDNKK---GALVNGTVTAVDAKGATIELEDGVEGYI 478
Query: 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
S+ + D S VG V + V+ + I LS+K
Sbjct: 479 RASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIK 520
Score = 135 (52.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 49/204 (24%), Positives = 91/204 (44%)
Query: 460 GSCVRVRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
G V V +L ++ G+ + A F + K G V GK+ ++ FG +
Sbjct: 325 GDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAK-GDKVTGKIKSITDFGIFIGL 383
Query: 519 PGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL 574
GG+ L H+S+ PG ++FK G E+ VL V ++R ++ + + +
Sbjct: 384 EGGIDGLV---HLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERIS--LGIKQMEN 438
Query: 575 AILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
++Y + + +G +T ++ G + +GV+G+ SE+ D + S + +VG
Sbjct: 439 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 498
Query: 634 QVVKCRIMSSIPASRRINLSFMMK 657
V+ + +R INLS K
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAK 522
Score = 112 (44.5 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 78/374 (20%), Positives = 154/374 (41%)
Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
A FE + + + G +VKG V+A+++ +V G+K+ +P +F+ +
Sbjct: 6 AQLFEEFL-NETQFQQGTIVKGTVVAIENGYVLVD--AGLKSESAIP-AEQFKNAAGELE 61
Query: 543 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILS-SYAEATDRL-ITHGWITKIEK 598
+VG+++ + V+ ++ +K +L +Y EA + I +G K++
Sbjct: 62 VQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIING---KVK- 117
Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSF 654
G F NG++ F P S + + P + + + + +V+K + +++ SRR +
Sbjct: 118 -GGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRR---AV 173
Query: 655 MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATV 713
+ + V D + G G + +A ++H +
Sbjct: 174 IESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPS- 232
Query: 714 MKSVIKPGYEF-DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 772
++ G E ++L D + + + L K + A + G V N+
Sbjct: 233 --EIVNVGDEILVKVLKFDRDRTRVSLGLKQL---GEDPWVAIAKRYPEGHKLSGRVTNL 287
Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSL 830
+ GCFV + G S+ +D ++ SK VG V +LD++ E RI+L L
Sbjct: 288 TDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGL 346
Query: 831 KQSCCSSTDASFMQ 844
KQ C ++ SF +
Sbjct: 347 KQ-CKANPWQSFAE 359
Score = 56 (24.8 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 875 GSVIEGKVHESNDFGVVVSFEE------H-SDVYGFITHHQLAGATVESGSVIQAAILDV 927
G + GK+ DFG+ + E H SD+ + + A + G I A +L V
Sbjct: 364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEE-AVREFKKGDEISAVVLAV 422
Query: 928 -AKAERLVDLSLKTVFIDRF 946
A+ ER + L +K + D F
Sbjct: 423 DAERER-ISLGIKQMENDPF 441
Score = 50 (22.7 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G+LV +T + ++ G G I +EV+ D+ +E+ +G V A+
Sbjct: 451 GALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDR---IEDASLILNVGDKVEAKFTG 507
Query: 1124 KSNK 1127
K
Sbjct: 508 VDRK 511
Score = 39 (18.8 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 30/145 (20%), Positives = 53/145 (36%)
Query: 69 EIHAEVDAEFEAVERGLHXXXXXXXXXTERKA----NETVDDLGSLFGDGISGKLPRYAN 124
++ ++VD +AVE G +A + ++ ++ G I+GK+ +
Sbjct: 63 QVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGI-INGKV-KGGF 120
Query: 125 KITLKNISAGM--KLWGV-----VAEVNEKDLVICXXXXXXXXXXXXXXXXXILDNEIEA 177
+ L I A + L V A + K+L ++++E
Sbjct: 121 TVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSV 180
Query: 178 NEDNLLPTIFHVGQLVSCIVLQLDD 202
D LL T+ G V IV L D
Sbjct: 181 ERDELLETL-QEGTEVKGIVKNLTD 204
>TIGR_CMR|VC_1915 [details] [associations]
symbol:VC_1915 "ribosomal protein S1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945 OMA:QLGQDPW
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 PIR:B82141
RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 162 (62.1 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 82/342 (23%), Positives = 133/342 (38%)
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
++ G VKG V + +GA V GGV L + M+ + P + VG E++ +VL
Sbjct: 189 LQEGTEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLK 247
Query: 556 VKSKRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
R V+ K L + +AI Y E +L G +T + +GCFV GV+G
Sbjct: 248 FDRDRTRVSLGLKQLGEDPWVAIAKRYPEG-HKL--SGRVTNLTDYGCFVEIEEGVEGLV 304
Query: 614 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXX 672
SE+ + PS + +VG V+ ++ RRI+L +K + +
Sbjct: 305 HVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLG--LKQCKANP-WQSFAEAQ 361
Query: 673 XXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL-LV 729
I G G HL+D + ++V K G E + L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLA 421
Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
+D E + L K + SD ++V+G V + G + + G+
Sbjct: 422 VDAERERISLGIKQMENDPFNAYVSDNKK---GALVNGTVTAVDAKGATIELEDGVEGYI 478
Query: 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
S+ + D S VG V + V+ + I LS+K
Sbjct: 479 RASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIK 520
Score = 135 (52.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 49/204 (24%), Positives = 91/204 (44%)
Query: 460 GSCVRVRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
G V V +L ++ G+ + A F + K G V GK+ ++ FG +
Sbjct: 325 GDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAK-GDKVTGKIKSITDFGIFIGL 383
Query: 519 PGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL 574
GG+ L H+S+ PG ++FK G E+ VL V ++R ++ + + +
Sbjct: 384 EGGIDGLV---HLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERIS--LGIKQMEN 438
Query: 575 AILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
++Y + + +G +T ++ G + +GV+G+ SE+ D + S + +VG
Sbjct: 439 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 498
Query: 634 QVVKCRIMSSIPASRRINLSFMMK 657
V+ + +R INLS K
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAK 522
Score = 112 (44.5 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 78/374 (20%), Positives = 154/374 (41%)
Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
A FE + + + G +VKG V+A+++ +V G+K+ +P +F+ +
Sbjct: 6 AQLFEEFL-NETQFQQGTIVKGTVVAIENGYVLVD--AGLKSESAIP-AEQFKNAAGELE 61
Query: 543 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILS-SYAEATDRL-ITHGWITKIEK 598
+VG+++ + V+ ++ +K +L +Y EA + I +G K++
Sbjct: 62 VQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIING---KVK- 117
Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSF 654
G F NG++ F P S + + P + + + + +V+K + +++ SRR +
Sbjct: 118 -GGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRR---AV 173
Query: 655 MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATV 713
+ + V D + G G + +A ++H +
Sbjct: 174 IESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPS- 232
Query: 714 MKSVIKPGYEF-DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 772
++ G E ++L D + + + L K + A + G V N+
Sbjct: 233 --EIVNVGDEILVKVLKFDRDRTRVSLGLKQL---GEDPWVAIAKRYPEGHKLSGRVTNL 287
Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSL 830
+ GCFV + G S+ +D ++ SK VG V +LD++ E RI+L L
Sbjct: 288 TDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGL 346
Query: 831 KQSCCSSTDASFMQ 844
KQ C ++ SF +
Sbjct: 347 KQ-CKANPWQSFAE 359
Score = 56 (24.8 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 875 GSVIEGKVHESNDFGVVVSFEE------H-SDVYGFITHHQLAGATVESGSVIQAAILDV 927
G + GK+ DFG+ + E H SD+ + + A + G I A +L V
Sbjct: 364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEE-AVREFKKGDEISAVVLAV 422
Query: 928 -AKAERLVDLSLKTVFIDRF 946
A+ ER + L +K + D F
Sbjct: 423 DAERER-ISLGIKQMENDPF 441
Score = 50 (22.7 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G+LV +T + ++ G G I +EV+ D+ +E+ +G V A+
Sbjct: 451 GALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDR---IEDASLILNVGDKVEAKFTG 507
Query: 1124 KSNK 1127
K
Sbjct: 508 VDRK 511
Score = 39 (18.8 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 30/145 (20%), Positives = 53/145 (36%)
Query: 69 EIHAEVDAEFEAVERGLHXXXXXXXXXTERKA----NETVDDLGSLFGDGISGKLPRYAN 124
++ ++VD +AVE G +A + ++ ++ G I+GK+ +
Sbjct: 63 QVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGI-INGKV-KGGF 120
Query: 125 KITLKNISAGM--KLWGV-----VAEVNEKDLVICXXXXXXXXXXXXXXXXXILDNEIEA 177
+ L I A + L V A + K+L ++++E
Sbjct: 121 TVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSV 180
Query: 178 NEDNLLPTIFHVGQLVSCIVLQLDD 202
D LL T+ G V IV L D
Sbjct: 181 ERDELLETL-QEGTEVKGIVKNLTD 204
>TIGR_CMR|BA_1519 [details] [associations]
symbol:BA_1519 "ribosomal protein S1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 KO:K02945 HOGENOM:HOG000044053 ProtClustDB:PRK06676
RefSeq:NP_843970.1 RefSeq:YP_018142.1 RefSeq:YP_027677.1
ProteinModelPortal:Q81SX5 DNASU:1083667
EnsemblBacteria:EBBACT00000012330 EnsemblBacteria:EBBACT00000016288
EnsemblBacteria:EBBACT00000024070 GeneID:1083667 GeneID:2817299
GeneID:2849711 KEGG:ban:BA_1519 KEGG:bar:GBAA_1519 KEGG:bat:BAS1408
OMA:DMMEEIN BioCyc:BANT260799:GJAJ-1482-MONOMER
BioCyc:BANT261594:GJ7F-1544-MONOMER Uniprot:Q81SX5
Length = 382
Score = 146 (56.5 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 48/175 (27%), Positives = 84/175 (48%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +K G VV+G V + FGA V GGV L + +S + +P + + G ++ +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242
Query: 554 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
L V + +RI+++ K + +A D I G + ++ G FV GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM--MKPTRVSED 664
S++ P+ + +GQ VK +++ A +RI+LS ++ V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354
Score = 50 (22.7 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 99 KANETVDDLGSL-FGDGISGKLPRYANKITLKNISAGMKLWGVV 141
K NE V D L GD ++G + + K L N+ G K GV+
Sbjct: 4 KMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNV--GYKTDGVI 45
>TIGR_CMR|CHY_1925 [details] [associations]
symbol:CHY_1925 "hydroxymethylbutenyl pyrophosphate
reductase/ribosomal protein S1" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0015968 "stringent response"
evidence=ISS] [GO:0042380 "hydroxymethylbutenyl pyrophosphate
reductase activity" evidence=ISS] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR000110
InterPro:IPR003029 InterPro:IPR003451 Pfam:PF00575 Pfam:PF02401
PRINTS:PR00681 PROSITE:PS50126 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0016491 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 GO:GO:0051538 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0019288 GO:GO:0050992 KO:K03527 TIGRFAMs:TIGR00216
eggNOG:COG0761 KO:K02945 RefSeq:YP_360744.1
ProteinModelPortal:Q3AAU0 STRING:Q3AAU0 GeneID:3726742
KEGG:chy:CHY_1925 PATRIC:21276941 HOGENOM:HOG000057927 OMA:KLIEDPW
ProtClustDB:PRK00087 BioCyc:CHYD246194:GJCN-1924-MONOMER
Uniprot:Q3AAU0
Length = 653
Score = 153 (58.9 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 47/160 (29%), Positives = 75/160 (46%)
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
+K G VKGKV + FGA V GG + L +S V+P + +VG EL VL
Sbjct: 461 LKEGSKVKGKVTKIMPFGAFVDL-GGFEGLLRAQDISWQRNVRPEEHLQVGQELEVVVLE 519
Query: 556 VKSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
V + V+ K L + E + + G + KI +HG + + G++G+ P
Sbjct: 520 VDRHNLKVSLGLKQLTPDPWQKIPD--ELKEGAVLEGTVVKILRHGLILELFPGIEGYLP 577
Query: 615 RSELGLDPGCEP-SSMYHVGQVVKCRIMSSIPASRRINLS 653
E + EP Y VGQ ++ +I++ P +++ LS
Sbjct: 578 ARETEAEN--EPLMKKYQVGQKMEVKILTLKPLEKKMTLS 615
>TIGR_CMR|SPO_0802 [details] [associations]
symbol:SPO_0802 "ribosomal protein S1" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 OMA:SRRYPQG
RefSeq:YP_166055.1 ProteinModelPortal:Q5LVA0 SMR:Q5LVA0
GeneID:3195039 KEGG:sil:SPO0802 PATRIC:23374881 Uniprot:Q5LVA0
Length = 558
Score = 104 (41.7 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 30/108 (27%), Positives = 54/108 (50%)
Query: 726 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
Q+L +D N+++S + L S A+Q ++ V G V NI E G FV LG
Sbjct: 159 QILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLTEGQTVDGVVKNITEYGAFVD-LGG 217
Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
+ G + + ++ +G++V+ ++ +N +T RI+L +KQ
Sbjct: 218 VDGLLHVTDMAWRRVNHPNEILNIGETVKVQVIKINKDTHRISLGMKQ 265
Score = 72 (30.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA----GATV----ESGSVIQAAILD 926
G+V+EG+V +FG+ + D+ G + L+ G G +++A + +
Sbjct: 368 GTVVEGEVKNITEFGLFIGLP--GDIDGMVHLSDLSWDERGEDAIQNYRKGDMVKAVVSE 425
Query: 927 VAKAERLVDLSLKTVFIDRFREA 949
V + + LS+K+V D+F EA
Sbjct: 426 VDIDKERISLSIKSVGGDKFAEA 448
Score = 67 (28.6 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 42/176 (23%), Positives = 78/176 (44%)
Query: 486 FEGLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK- 541
FE L+ F + G VVKGKVIA+++ AI+ G K + + EF PG+
Sbjct: 9 FEALLNESFEMDTPEEGSVVKGKVIAIEAGQAIIDV--GYKMEGRV-ELKEF--ANPGEA 63
Query: 542 -KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA---ILSSYAEATDRLITHGWITKIE 597
+ +G E+ + ++ R + + + + A + +YA+ D+ + +++
Sbjct: 64 PEISIGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYAD--DQRVEGAIFGRVK 121
Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ---VVKC-RIMSSIPASRR 649
G F G F P S++ + P + + + Q ++K R +I SRR
Sbjct: 122 --GGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRR 175
Score = 56 (24.8 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G++V+ E+ I L + G +H+++++ D+ E+ N++ G V A +
Sbjct: 368 GTVVEGEVKNITEFGLFIGLPGDIDGMVHLSDLSWDERG--EDAIQNYRKGDMVKAVV-- 423
Query: 1124 KSNKPDMKKSFLWELSIK 1141
++ D+ K + LSIK
Sbjct: 424 --SEVDIDKERI-SLSIK 438
Score = 55 (24.4 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 876 SVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAK 929
SV G+V D+G V E H + + G V + ++ +L++
Sbjct: 282 SVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDG 341
Query: 930 AERLVDLSLK 939
A+R V L LK
Sbjct: 342 AKRRVSLGLK 351
Score = 47 (21.6 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV 1103
Y + S+ +T I ++ G G +H++E++ K NV
Sbjct: 278 YPLESVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNV 320
Score = 43 (20.2 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 25/107 (23%), Positives = 42/107 (39%)
Query: 850 EEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL 909
+E+I++ S + V G GS+I V D G+ V +E + FI L
Sbjct: 430 KERISLSIKSVGGDKFAEAVGGVKRGSIITVNVTAIEDGGIEVEYE---GMKSFIRRSDL 486
Query: 910 AGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
+ + G + + +V R + LS+K I +EA
Sbjct: 487 SRDRADQRPERFSVGDKVDVRVTNVDSKTRRLGLSIKAREIAEEKEA 533
>TIGR_CMR|CJE_0972 [details] [associations]
symbol:CJE_0972 "ribosomal protein S1" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 ProtClustDB:PRK06299
RefSeq:YP_178970.1 ProteinModelPortal:Q5HUR5 STRING:Q5HUR5
GeneID:3231483 KEGG:cjr:CJE0972 PATRIC:20043727 OMA:SRRYPQG
BioCyc:CJEJ195099:GJC0-992-MONOMER Uniprot:Q5HUR5
Length = 556
Score = 146 (56.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 72/338 (21%), Positives = 134/338 (39%)
Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
+++G V + ++G V GGV L +S V PG +K G ++ +V+ +R
Sbjct: 205 LIEGIVKKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKER 263
Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI----TKIEKHGCFVRFYNGVQGFAPRS 616
H +K+ A+ ++E D L I + IE +G FV N ++GF S
Sbjct: 264 ---KHLSLSIKA--ALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHIS 318
Query: 617 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXX 675
E+ D + P + GQ + ++ P RR+ +S +R D
Sbjct: 319 EISWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPF-DEFMKSYKIADV 377
Query: 676 XXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNES 734
+ G +G + E + + K G + +++ +D E+
Sbjct: 378 VEGEITSVTSFGAFVKLGGIEGLLHNEDAS--WDRNDKCKDKFSQGDKIKVKIIKIDEEN 435
Query: 735 SNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
+ LSAK +NS+ + + IH +V G + +I + G FV + +
Sbjct: 436 QKISLSAKE--LNSSPV--QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKED 491
Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+L +G + + I+ ++ + RI LS+K
Sbjct: 492 ISTSMLENLK----IGDDIEAAIVFIDEKKNRIRLSVK 525
Score = 97 (39.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 543 FKVGAELVFRVLGVKSKRITVTHKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGC 601
F VG + V+G + R ++HKK L K K + + +Y E D + T + K K G
Sbjct: 75 FNVGDSIKVAVMGSRGGRSLLSHKKALRKEKVIEFIKNYQENQDDIFTVKVVGK-NKGGL 133
Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
V N V+ F P+S+ G E +++ +G+ K +I+
Sbjct: 134 IVVDENDVEFFLPKSQYGFK---ETNNI--IGKTFKVKII 168
Score = 80 (33.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 25/102 (24%), Positives = 55/102 (53%)
Query: 851 EKIAMLQSSKHNGSELK-WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL 909
+KI+ L + + N S ++ + + +G +++G + + DFGV V ++ D I +
Sbjct: 436 QKIS-LSAKELNSSPVQEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDA--LIHKEDI 492
Query: 910 AGATVES---GSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
+ + +E+ G I+AAI+ + + + + LS+K + + RE
Sbjct: 493 STSMLENLKIGDDIEAAIVFIDEKKNRIRLSVKNLVRIKERE 534
>TIGR_CMR|GSU_2603 [details] [associations]
symbol:GSU_2603 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 RefSeq:NP_953648.2
GeneID:2686316 KEGG:gsu:GSU2603 PATRIC:22028059
BioCyc:GSUL243231:GH27-2582-MONOMER Uniprot:Q749Y9
Length = 586
Score = 134 (52.2 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 81/367 (22%), Positives = 147/367 (40%)
Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
T +++ G +G V + +GA V GGV L + MS + P + K G +L
Sbjct: 210 TLANLAEGQTREGVVKNITDYGAFVDI-GGVDGLLHVTDMSWGRLGHPSEMLKPGDKLSV 268
Query: 552 RVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
++L ++ I++ K+ LA+ + + DR+ G + + +G FV GV
Sbjct: 269 KILKYDQEKGKISLGLKQITPDPWLAVEQKF-QVGDRV--SGRVVSMTDYGAFVALDEGV 325
Query: 610 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXX 668
+G SE+ PS + VG V+ ++ +RRI+L +K + +
Sbjct: 326 EGLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRRISLG--LKQAQANP-WTQL 382
Query: 669 XXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 725
+ G +G H++D + K + PG +
Sbjct: 383 EEKYPVGTKLEGQIKSITDFGVFIGVDEGIDGLVHVSD----ISWTKRIKHPGEVYAKGQ 438
Query: 726 --QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
Q +VL D E+ L L K + +P A++ P + V G V ++ + G F+
Sbjct: 439 TVQAVVLNVDAENERLSLGIKQLTPDPWSVIP--ATY-RPGTRVRGKVTSVTDFGVFLEI 495
Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK--QSCCSSTD 839
+ G S+ + A VG + + +L V+ +I LS+K Q+ +
Sbjct: 496 EEGIEGLVHVSELSREKVASPKDFASVGDELDAVVLSVDDVEKKIALSVKALQAAAEKAE 555
Query: 840 A-SFMQE 845
S+MQ+
Sbjct: 556 LESYMQD 562
Score = 122 (48.0 bits), Expect = 0.00094, P = 0.00094
Identities = 82/370 (22%), Positives = 147/370 (39%)
Query: 232 EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSI 287
EG VK+I D+G + G G L +++ + +KPG L +
Sbjct: 216 EGQTREGVVKNITDYGAFVDIG--GVDGLLHVTDMSWGRLGHPSEMLKPGDKLSVKILKY 273
Query: 288 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENGVMLSFLTYFT 346
D+ + + L K +T D ++++ G VS RV S+ + G ++
Sbjct: 274 DQEKGKISLGL------KQITPD-PWLAVEQKFQVGDRVSGRVVSMTDYGAFVALDEGVE 326
Query: 347 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
G V + + T + + +V +L +D +R + L L +A P +
Sbjct: 327 GLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRRISLGLK----QAQANP-WTQ 381
Query: 407 VGDIYDQ-SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVR 464
+ + Y +K V +SD++ + ++ + Y +G V+
Sbjct: 382 LEEKYPVGTKLEGQIKSITDFGVFIGVDEGIDGLVHVSDISWTKRIKHPGEVYAKGQTVQ 441
Query: 465 VRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
+L E L+ GI + + V + +PG V+GKV +V FG ++ G++
Sbjct: 442 AVVLNVDAENERLSLGIKQLTPDPWSVIP-ATYRPGTRVRGKVTSVTDFGVFLEIEEGIE 500
Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSY- 580
L + +S ++ P VG EL VL V K+I ++ K ++ A L SY
Sbjct: 501 GLVHVSELSREKVASPKDFASVGDELDAVVLSVDDVEKKIALSVKALQAAAEKAELESYM 560
Query: 581 ---AEATDRL 587
EAT L
Sbjct: 561 QDRGEATSNL 570
Score = 108 (43.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 70/345 (20%), Positives = 138/345 (40%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV 556
G +V+GK+ G V GV+A P S+ ++ +PG +G F+VL +
Sbjct: 131 GGIVEGKITGKVKGGLTVDI--GVQAFLPA---SQVDL-RPGGNLDKYIGVTDRFKVLKL 184
Query: 557 KSKR--ITVTHKKTLVKSKLAILS-SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
KR I ++ + L + + + + + A + G + I +G FV GV G
Sbjct: 185 NKKRGNIVLSRRVLLEEERAGVRTETLANLAEGQTREGVVKNITDYGAFVDI-GGVDGLL 243
Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDXXXXXXXX 672
+++ PS M G + +I+ +I+L + P
Sbjct: 244 HVTDMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKISLGLKQITPDPWLAVEQKFQVGD 303
Query: 673 XXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFDQLLV- 729
+ +G +G + ++ L H + + +V G E + +++
Sbjct: 304 RVSGRVVSMTDYGAFVALDEGV-EGLVHVSEMSWTKRLRHPSDLLTV---GDEVETVVLG 359
Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGF 788
+D + + L K + N QL +P + + G + +I + G F+ + G
Sbjct: 360 IDTGNRRISLGLKQAQANPWTQLEEK----YPVGTKLEGQIKSITDFGVFIGVDEGIDGL 415
Query: 789 APRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
S +R + Y GQ+V++ +L+V++E R++L +KQ
Sbjct: 416 VHVSDISWTKRIKHPGEVYAKGQTVQAVVLNVDAENERLSLGIKQ 460
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV 927
G+ + GKV DFGV + EE + G + +L+ V S G + A +L V
Sbjct: 476 GTRVRGKVTSVTDFGVFLEIEE--GIEGLVHVSELSREKVASPKDFASVGDELDAVVLSV 533
Query: 928 AKAERLVDLSLKTV 941
E+ + LS+K +
Sbjct: 534 DDVEKKIALSVKAL 547
>TIGR_CMR|NSE_0408 [details] [associations]
symbol:NSE_0408 "ribosomal protein S1" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR InterPro:IPR022967 SMART:SM00316
eggNOG:COG0539 HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW
RefSeq:YP_506295.1 ProteinModelPortal:Q2GE01 STRING:Q2GE01
GeneID:3932255 KEGG:nse:NSE_0408 PATRIC:22680873
ProtClustDB:CLSK2527828 BioCyc:NSEN222891:GHFU-431-MONOMER
Uniprot:Q2GE01
Length = 553
Score = 127 (49.8 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 84/372 (22%), Positives = 151/372 (40%)
Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
F+ S ++ G +V+G + ++ +V G+K+ +P + +F + G +VG++++
Sbjct: 38 FSDSLIREGDMVEGVIKSISPHFVLVNL--GLKSEGKIP-VQQFHDL--GT-LEVGSKII 91
Query: 551 FRVLGVK--SKRITVTHKKTLVKSKL--AILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
V + S + +++ K L K K+ + Y +D + G I K GC V
Sbjct: 92 VYVEKTETGSGNLVLSYTKAL-KQKVWNRLYEMYLNGSDEDVM-GVILYTIKSGCIVEV- 148
Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP------ASRRINLSFMMKPTR 660
G+ F P S L + P +P+++ VG +K RI+ P SRR L + + R
Sbjct: 149 EGLNAFLPNSHLDVRPVSDPATL--VGVKLKFRILKMDPKTGKIFVSRRKALGAVHEAAR 206
Query: 661 VSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVM--KSVI 718
SE I + G + + + A V S+
Sbjct: 207 -SEYISTIKEGDIIDGRVKSIASYGVFVQIHESDKVGVVDGLLYVNDISWARVTHPSSIY 265
Query: 719 KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
G E +++ +D E + L K N + + + P +V G V ++ + G
Sbjct: 266 SVGQEVRVKVIAVDPEKGRISLGVKQLTENPWKDVSKKYT---PGNVYPGVVTSVEDYGI 322
Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS-VRSNILDVNSETGRITLSLKQSCCS 836
FVR + G S + R K ++ S V +L V+ E +I LS+KQ C
Sbjct: 323 FVRLEEGVEGLV-HSGEISWTR---EKPLFLPNSKVNVMLLSVDEEGHKIALSVKQ-CSD 377
Query: 837 STDASFMQEHFL 848
+ F+ + L
Sbjct: 378 NPWKKFLDAYGL 389
Score = 54 (24.1 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 852 KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE--HSDVYGFI 904
KIA+ + K+++ + +G V++ KV E D G+V++ + +S V G++
Sbjct: 367 KIALSVKQCSDNPWKKFLDAYGLGVVVKCKVVEITDSGIVLTLLDPGYSYVRGYV 421
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
EL+ +F IG + VN D+ V+ N+
Sbjct: 435 ELK-RFTIGDEVEAKLVHVNPDRGRVMFNI 463
>UNIPROTKB|O06147 [details] [associations]
symbol:rpsA "30S ribosomal protein S1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842577 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
KO:K02945 PIR:D70559 RefSeq:NP_216146.1 RefSeq:NP_336122.1
RefSeq:YP_006515019.1 ProteinModelPortal:O06147 SMR:O06147
PhosSite:P12061590 PRIDE:O06147 EnsemblBacteria:EBMYCT00000003837
EnsemblBacteria:EBMYCT00000072148 GeneID:13316409 GeneID:885188
GeneID:924199 KEGG:mtc:MT1666 KEGG:mtu:Rv1630 KEGG:mtv:RVBD_1630
PATRIC:18125426 TubercuList:Rv1630 HOGENOM:HOG000044053 OMA:WQQFART
ProtClustDB:PRK07899 Uniprot:O06147
Length = 481
Score = 130 (50.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 46/162 (28%), Positives = 75/162 (46%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
++++ G + KG V ++ +FGA V GGV L + +S I P + +VG E+ V
Sbjct: 204 NNLQKGTIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEV 262
Query: 554 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
L V +R++++ K T ++A I G +TK+ G FVR G++G
Sbjct: 263 LDVDMDRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEG 319
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
SEL P + VG +++ RRI+LS
Sbjct: 320 LVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLS 361
Score = 124 (48.7 bits), Expect = 0.00043, P = 0.00043
Identities = 81/393 (20%), Positives = 159/393 (40%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G +V+G ++ VD ++ + + P +S V P + VG E+ VL +
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95
Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
K R+ ++ K+ + + + E + + G + ++ K G + G++GF P S
Sbjct: 96 KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151
Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDXXXX 668
E+ +P ++G+ ++ +I+ +++ SRR L R SE
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVR-SE--FLN 204
Query: 669 XXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
+ G G + L+ H++H + V++ G E +
Sbjct: 205 NLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
+L +D + + LS K + Q+ P + H +V G V ++ G FVR
Sbjct: 262 VLDVDMDRERVSLSLK-----ATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 316
Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD----A 840
+ G S+ + + VG ++D++ E RI+LSLKQ+ T+ A
Sbjct: 317 IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEFDPA 376
Query: 841 SF-MQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
+ M + + +E+ + + +W+EGF
Sbjct: 377 KYGMADSY--DEQGNYIFPEGFDAETNEWLEGF 407
Score = 45 (20.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 441 TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGM 500
TI V +EV L+ YK + R L +H + E LV T D K G
Sbjct: 42 TIVKVDRDEVL-LDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED-KEGR 99
Query: 501 VVKGK 505
++ K
Sbjct: 100 LILSK 104
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1152 1022 0.00080 123 3 11 22 0.40 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 617 (66 KB)
Total size of DFA: 432 KB (2208 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 73.41u 0.21s 73.62t Elapsed: 00:00:03
Total cpu time: 73.44u 0.21s 73.65t Elapsed: 00:00:03
Start: Fri May 10 09:14:53 2013 End: Fri May 10 09:14:56 2013