BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001115
(1152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
Length = 1874
Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust.
Identities = 342/1166 (29%), Positives = 553/1166 (47%), Gaps = 124/1166 (10%)
Query: 54 FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
FPRGG + E+ + ++ E E+ +R KK +K KT++ ET
Sbjct: 8 FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKR---KKIQKGPAKTKKLKVETRQ- 63
Query: 107 LGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
S K R +I ++++ GM++ G V EVNE +L I LP GL+G + +
Sbjct: 64 ---------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTE 114
Query: 166 ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
D + NE A E+ L LP +F G LV C+V LD K K+ + LSL
Sbjct: 115 ICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNP 172
Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
+ + LS ET++ GM+LT V S+EDHGY++ G+ FLP E N G
Sbjct: 173 KNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAK 232
Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
+K G L ++ + +R VV LS VS + + + +++ L+PG++V +VQ +
Sbjct: 233 LKVGQYLNCLIEEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVT 292
Query: 334 ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
G+ L FL++F+G VD HL T + N ++V A +L V P +RAV L+L P
Sbjct: 293 PLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRP 347
Query: 394 YLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
L P + + ++G + D V G + T AY + ++ +
Sbjct: 348 VFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKK 404
Query: 451 RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
+ +K G+ + RI+ + ++ LA L+ S E + D+KPG +VKGKV+ +
Sbjct: 405 TFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIK 464
Query: 511 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
G +V+ ++ L P H+++ I P KK+ VG E+ RVL K+K++ +T KKT
Sbjct: 465 PHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKT 524
Query: 569 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
LV+SKL ++ Y +A L THG+I +++ +GC V+FYN VQG PR EL + +P S
Sbjct: 525 LVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPES 584
Query: 629 MYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDD------LVKLGSLVSGVVDVV 680
+++ GQVVK +++ P+ R+ LSF + P + E V G L V
Sbjct: 585 VFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEK 644
Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
T + + V V+ G +PT HL+DH+ + ++ ++ G ++L L +LL
Sbjct: 645 TKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLC 703
Query: 741 AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
K +L+++ + Q P S IHP ++ G+V NI + G FV+F L+G AP++ D
Sbjct: 704 RKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKF 763
Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
S + GQ+V + + +V+ E R+ LSL+ S C+ D + LEE+ +
Sbjct: 764 VTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823
Query: 856 LQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
+ S L + + G ++ +V E + G V+ F E V G + + + AG
Sbjct: 824 RSLMSNRDSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAG 881
Query: 912 ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
+E G +A IL+V + V +SL + NR+A+K K+ +
Sbjct: 882 QELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD-------- 925
Query: 972 QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
+ AIV+ ++E++ V SL E H ++ S N T +F ++ GQ V T+
Sbjct: 926 --LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEP 983
Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
T LLL ++ + T R KK + +G +V +
Sbjct: 984 GVTG--LLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTV 1041
Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
IKP + + G G IH + + DD V + + K+G+ VTAR+I DMK
Sbjct: 1042 KSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMK 1097
Query: 1132 K-SFL-----------WELSIKPSML 1145
FL ELS++PS L
Sbjct: 1098 TFKFLPISHPRFIRTIPELSVRPSEL 1123
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF-----LPRNNLAENSGID--VKPGL 278
S+E ++EG +L +VKS++ G ++ G PS TG + ++N ++N+ D + G
Sbjct: 1317 SIEDLEEGQLLRGFVKSVQPSGVLVGLG-PSVTGLARHPHVSQHNQSKNAPYDRHLPEGK 1375
Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSK 305
LL V ++ +V LS PD K
Sbjct: 1376 LLTAKVLRLNHQESLVELSLLPDATGK 1402
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust.
Identities = 333/1163 (28%), Positives = 556/1163 (47%), Gaps = 116/1163 (9%)
Query: 54 FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
FPRGG + + E+ + E D F+ + E G K+ K +K KT++ E +
Sbjct: 8 FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63
Query: 110 LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
S K R +I +++++ GM++ G V EVNE +LVI LP GL+G + + D
Sbjct: 64 ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117
Query: 169 PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
NE E L LP +F G LV C+V L + GK+ + LSL +
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175
Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
+ LS E ++ GM+LT V S+EDHGY++ G+ FLP E N G +K
Sbjct: 176 NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235
Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
G L +V + VV LS VS + + + +++ L+PG++V +VQ + G
Sbjct: 236 GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
+ L+FLT+FTG VD HL T + N + V A IL V P +R V L+L P L
Sbjct: 296 LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350
Query: 397 HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
P + + +G + D V + G + + AY +S +++ +
Sbjct: 351 QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407
Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
+ +K G+ + RI+ + ++ LA L+ S E + D++PG VVKG V+ + S+G
Sbjct: 408 PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467
Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
+V+ ++ L P H+++ + P KK+ +G E+ RVL ++K++ +T KKTL++
Sbjct: 468 MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527
Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
SKL +++ YA+A L THG+I +++ +GC V+FYN VQG P+ EL + +P +++
Sbjct: 528 SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587
Query: 632 VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
GQVVK +++ P+ R+ LSF + +P S+ + +G LV V T
Sbjct: 588 TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647
Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
+ + V V+ + +PT HL+DH+ + ++ ++ G ++L L +LL
Sbjct: 648 KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706
Query: 742 KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
K +L+++ + Q P + S IHP ++ G+V +I + G F++F L+G AP++ D
Sbjct: 707 KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766
Query: 800 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
S + GQ+V + + +V+ E R+ LSL+ S C D + + LL + + LQ
Sbjct: 767 TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825
Query: 859 ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
S + ++ + G ++ V E D VV S D+ + + AG
Sbjct: 826 RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885
Query: 914 VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
VESG + IL+V + V +SL + NR+A+K ++ E HQ
Sbjct: 886 VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929
Query: 974 VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
AIV+ +++++ + SL E H ++ S N T +F ++ GQ V T+
Sbjct: 930 --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987
Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
T L + A T + K ++ KK + +G +V + IK
Sbjct: 988 TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047
Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
P + + G G IH + + DD + K+G+TVTAR+I DM K+F
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102
Query: 1136 W-------------ELSIKPSML 1145
+ ELS++PS L
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSEL 1125
>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2
Length = 1862
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 333/1177 (28%), Positives = 555/1177 (47%), Gaps = 125/1177 (10%)
Query: 54 FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
FPRGG L + E+ +V E ++R +K K KK + + +++
Sbjct: 8 FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67
Query: 107 LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
+ F ++L+++ GM++ G V EV+E +LV+ LP GL+G + +
Sbjct: 68 IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115
Query: 167 LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
D NE A E+ L LP +F G LV C+V LD E GK+ + LS+
Sbjct: 116 CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173
Query: 220 LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
+ K LS + ++ GM+LT V S+EDHGY++ G+ FL E N G
Sbjct: 174 RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233
Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
K G L VV + VV LS + VS + + +++ L+PG++V +VQ + +
Sbjct: 234 KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293
Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
G+ L+FLT+F G VD HL+ Y+ ++ V A IL V P +R V L+L P
Sbjct: 294 FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348
Query: 395 LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
LH P + + ++G + D V + G + + + AY +S +++ +
Sbjct: 349 FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405
Query: 452 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
+ +K GS + RI+ + ++ LA L+ S + D+K G VVKG V+A+
Sbjct: 406 FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465
Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
FG +V+ +K L P H+++ + P KK+ G E+ RVL ++K++ +T KKTL
Sbjct: 466 FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525
Query: 570 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
V SKL++++ Y A L THG I +++ +GC V+FYN VQG P+ EL +P ++
Sbjct: 526 VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585
Query: 630 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----------LVKLGSLVSGVVDV 679
++ GQVVK ++S P+ R+ LSF + +D V++G LV V
Sbjct: 586 FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645
Query: 680 VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
T + V ++ + +PT HL+DH + ++ ++ G ++L L ++LL
Sbjct: 646 KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704
Query: 740 SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
K +L+++ + Q P S I P ++ G+V I E G FV+F L+G +P++ D
Sbjct: 705 CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764
Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
S+ + GQ+V + + +V+ R+ LSL+ S CS S SF+ LEE
Sbjct: 765 FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824
Query: 855 MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
+ S + ++ + G V++ VHE D VV S + D+ + + AG
Sbjct: 825 IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884
Query: 913 TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
VE G + +L V + V +SL ++R K ++ R++S+ HQ
Sbjct: 885 EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929
Query: 973 TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
IV+ ++E++ V SL E H + ++ +S N T F ++ GQ V T+
Sbjct: 930 ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986
Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
T L+L ++ + ++ET K ++KK+ S
Sbjct: 987 VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044
Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
+G V I +K + + GF G IH + + DD V + + K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103
Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTGKW 1149
I K++K P F + ELS++PS L G +
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSY 1140
>sp|O74835|RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rrp5 PE=1 SV=1
Length = 1690
Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 227/818 (27%), Positives = 373/818 (45%), Gaps = 62/818 (7%)
Query: 54 FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
FPRGG SLT E E E +F G + +KK + K + + +L +
Sbjct: 35 FPRGGASSLTPLEYKEAVLEAKKDFMESASGTAELSKKTRPKKKGSKKSSKSELDN---- 90
Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADA 166
L + + KNI+ G + G +A++N DL + LP L G + +D
Sbjct: 91 --EENLKVHIQSLRYKNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDR 148
Query: 167 LDPILDNEIEAN-----EDNL-----LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWLS 215
LD I DN E N ED L L ++ VGQ V V L ++ + GKR I LS
Sbjct: 149 LDSI-DNHAEDNAATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELS 207
Query: 216 LRLSLLYKGLSLETVQ--EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
L+ G + E G ++ A V SIEDHG + G+ ++TGFL + ++ N
Sbjct: 208 LKPQDA-NGSAPEAADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHI--NDFPF 264
Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSI 332
V+ LL V+ DR + +LS ++ TK L+ + S+ ++PG ++ V I
Sbjct: 265 VEGQSLLCSVISKEDR---IFHLS-----LTATSTKALEVMPSVQAILPGDYINVLVTDI 316
Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVG- 388
E+GV+ ++ T DI+H + + ++ + K V AR+LFV DP AV
Sbjct: 317 KESGVIAKYMGVVDVTSDIYH-SSPVKGEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSF 375
Query: 389 ----LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-IS 443
LT N + N P + +G I + +KV V LG+ D+ +S A+++ +S
Sbjct: 376 LPHVLTFN-FATPNTPHPDQLDIGFIVNAAKVTYVSSSLGVFCDVGVPEISGFAHISRLS 434
Query: 444 DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
D + YK S RI+ + +++ L + S D++ G V
Sbjct: 435 DKKVAGISPNSGPYKVDSTHEARIINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVD 494
Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRI 561
G + + G +V G+ L P HM++ + P ++FKVG+ + RVL V KR+
Sbjct: 495 GTIAKLIPQGIVVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRV 554
Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
+T KK+L+ + L ++ Y +AT T G + +I + G V FYN V+ F P SE+
Sbjct: 555 LLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEA 614
Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK---PTRVSEDDLVKLGSLVSGVVD 678
+ + VGQ + I+S P +R++ + + R+ + +K GS++SG+V
Sbjct: 615 YIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVL 674
Query: 679 VVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
T ++V+V + K G I L D L + + + ++ + ++LVL ++S
Sbjct: 675 QKTEDSVIVDLGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKK 732
Query: 738 L--LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
L LS K SL+ +A++ +P + + + G+V N G FV F L P++
Sbjct: 733 LISLSLKKSLVEAAKENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAY 792
Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+ S Y QSV L V + +S K
Sbjct: 793 ISEEYVPVPSAVYKPQQSVTCVCLSVELSQEKAFMSFK 830
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 194/911 (21%), Positives = 349/911 (38%), Gaps = 174/911 (19%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
+ +++I G + G +A++ + +V+ + G+ GL + D L
Sbjct: 482 LRIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIAL---------QFPER 532
Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSL----ETVQEGMVLTAYVK 241
F VG V C VL + + ++++ L+L+ SLL L L E G +
Sbjct: 533 RFKVGSSVKCRVLSTN-----VLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLA 587
Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
I + G I+ F S FLP + ++E D + + +T V +S DP+
Sbjct: 588 RIFEDGAIVEF-YNSVRAFLPVSEMSEAYIRDAREHF-------KVGQTLSVTIVSCDPE 639
Query: 302 TVSKCV-----TKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
V + D K + + + G ++S V E+ V++ TG + + L
Sbjct: 640 NRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLC 699
Query: 356 NTFPTTNWKNDYNQHKKVNAR-----------ILFVDPTSRAVGLTLNPYLLH----NRA 400
+ D N+ KV + +L D + + + L+L L+ NR
Sbjct: 700 D--------GDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRM 751
Query: 401 PPSHVKVGDIYDQSK---VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
P + + D+ + K VR G+ ++ V A V + ++EE V Y
Sbjct: 752 P---INITDLKEGIKYFGFVRNATTFGVFVEFCDGLV---ALVPKAYISEEYVPVPSAVY 805
Query: 458 KEGSCVRVRIL--------GFRHLEGLATGILKASAF------------EGLVFTHSDVK 497
K V L F + LA KA F E + T+ D
Sbjct: 806 KPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTY-DYV 864
Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIV---KPGKKFKVGAELVFR 552
G + V + + V V + + + EIV KP K+F G ++ R
Sbjct: 865 AGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKIRVR 924
Query: 553 VLGVKSKR----ITVTHK-------KTLVKSKLAILSSYAEATDRLI----THGWITKIE 597
VLG+ R + ++H+ + V+ + + ++ + G++ +
Sbjct: 925 VLGIHDSRNHKFLPISHRVSPKQFLELSVRPSILNMEPFSMKEPQFKKGDEVTGFVNNVS 984
Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSF 654
K +V V G P +L D E +S+ + +G+ +KC +++ A I LS
Sbjct: 985 KECVWVSLTPSVNGRIPILDLTTDVK-ELNSLQKHFFLGKAIKCYVVN---AEDSITLS- 1039
Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
+ P + E+ L LV V +V A++ G+ G + + D +
Sbjct: 1040 AIGPLQGFEN-LTPGSRLVGKVTNVNEAGAILQL---PGHMSGRVSRIDMFDDYD----- 1090
Query: 715 KSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV--- 764
I P +F + +L +D + + LSA+ S Q P + NSV
Sbjct: 1091 ---ILPETKFTRNNLVGVCVLSVDVPNRKVALSARNS---RTQSQPVEIKDKEINSVDDL 1144
Query: 765 -----VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
G+VCN+ G FV L + D D ++V Q V+ +I+ +
Sbjct: 1145 KIGDICRGFVCNVANQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGI 1204
Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
++++ RI +SLKQS D+S + + F +GS ++
Sbjct: 1205 DNDSKRIEMSLKQSKIK--DSSEITKTF----------------------ADIAVGSNLD 1240
Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAER 932
G V + D+GV++ + ++ G ++A A V SG ++A +LDV +R
Sbjct: 1241 GTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKR 1300
Query: 933 LVDLSLKTVFI 943
+ L LK+ +
Sbjct: 1301 RIALGLKSSYF 1311
>sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP5 PE=1 SV=1
Length = 1729
Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 217/862 (25%), Positives = 383/862 (44%), Gaps = 120/862 (13%)
Query: 54 FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
FPRGG +LT E ++ E ++ E+V+ KKKKT +K+ + S
Sbjct: 38 FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97
Query: 110 LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
D L + N TLKN G L G ++ + ++DL I G+ G
Sbjct: 98 ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154
Query: 160 -----------LARAADALDP----ILDNEIEANED--------NLLPTI---FHVGQLV 193
+ DA D + D E E+++D N LP + FH+GQ +
Sbjct: 155 FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214
Query: 194 SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
C V++ L+ K+ K++I L++ S + + V+ + A VKSIEDHG L
Sbjct: 215 RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNIYADEDLVKSTSIQCA-VKSIEDHGATL 273
Query: 251 HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
GLP FTGF+ + + + PG + G + + DR+ + +++D S K
Sbjct: 274 DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325
Query: 310 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
+ SID ++PG +V +SI +NG+ +G V++ HL+ TF + K+ +
Sbjct: 326 ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFVI 384
Query: 370 HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
+ RI+ L N+ S KV + + +++++ L +
Sbjct: 385 GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426
Query: 430 PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
+ P+ S Y+ + D V V ++E S R+LG+
Sbjct: 427 DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482
Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLP 529
++ + + +D+ G ++ ++ +V S G ++ F G KA P
Sbjct: 483 PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542
Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
H+S+ +V P +KFK+G+++ RV+ V S+ + VT KK+LV ++L ++S+Y A +
Sbjct: 543 HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602
Query: 586 ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
T I + +GC + F+ G+ GF P SE+ P +GQ V +++
Sbjct: 603 IKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662
Query: 642 SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
RRI + + + ++ +++V ++++ V T ++V+V + G +
Sbjct: 663 DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721
Query: 697 GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
G I HL+D +E ++ G E L++ D + +S K SLI A++ L
Sbjct: 722 GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781
Query: 753 P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
P D ++ + +H Y+ +I + G FV F G+ G S AVD + D+SK +Y+
Sbjct: 782 PLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841
Query: 810 QSVRSNILDVNSETGRITLSLK 831
QSV +L + + + LSLK
Sbjct: 842 QSVTVYLLRTDDKNQKFLLSLK 863
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 11/211 (5%)
Query: 632 VGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY 688
+ V+ ++S +++I LS K + + +K G +V G+V V + VY
Sbjct: 1136 INNVIPTTVLSVDEQNKKIELSLRPATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVY 1195
Query: 689 VIAKGYSKGTIPTEHLADHLEHATVMKSVIKP-GYEFDQLLVLDNESSNLLLSAKYSLIN 747
+ K + +P L+D + K KP Y +++ D E S + L+ + S IN
Sbjct: 1196 LSRK--VEAFVPVSKLSDS--YLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRESEIN 1250
Query: 748 SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKT 805
++ S I V G + ++ + G FV+ +TG A ++ D + DLS
Sbjct: 1251 GDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSAL 1310
Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
+ VG V++ +L N E +I+LSLK S S
Sbjct: 1311 FGVGDRVKAIVLKTNPEKKQISLSLKASHFS 1341
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 134/629 (21%), Positives = 253/629 (40%), Gaps = 98/629 (15%)
Query: 125 KITLKNISAGMKLWGV-VAEVNEKDLVICLPG-GLRGLARAADALDPILDNEIEANEDNL 182
K T++NI G + V V E + +++ +P GLRG+ + D+ IE N L
Sbjct: 686 KDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGLRGVIYVGH----LSDSRIEQNRAQL 741
Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG------LSLETVQE---G 233
+G ++ +V+ K+ R +SL+ SL+ L+ + V++
Sbjct: 742 KK--LRIGTELTGLVID-----KDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKD 794
Query: 234 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV-----RSID 288
+ + AY+KSI D G + F F G + + ++ ID+ + V R+ D
Sbjct: 795 VPMHAYIKSISDKGLFVAFN-GKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDD 853
Query: 289 RTRKVVYLSSDP----------DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
+ +K + P + V +K S D L G +V +++S+ +N +
Sbjct: 854 KNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIK--SWDDLSIGSIVKAKIKSVKKNQLN 911
Query: 339 LSFLTYFTGTVDIFHLQNTF--------PTTNWKNDY--------NQHKKVNARILFVDP 382
+ G VDI + +T+ P +N+K D N K + +
Sbjct: 912 VILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLPITHK 971
Query: 383 TSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS-----------KVVRVDRGLGLLLDIPS 431
S+A L L+ PS +K +++ +S V G L L I
Sbjct: 972 ISKASVLELS-------MKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTI-- 1022
Query: 432 TPVSTPAYVTISDVAEEEV---RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
+PV A +++ D+A+ + +E + GS ++V++ G I K+
Sbjct: 1023 SPV-LKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDREHGFVNAIGKSH---- 1077
Query: 489 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH-MSEFEI-VKPGKKFKVG 546
+ S +K G + G+V+ + ++ V + + +++F + +K + K+
Sbjct: 1078 VDINMSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFEDKIN 1137
Query: 547 AELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
+ VL V ++K+I ++ + K++ + S+ + I G + + G FV
Sbjct: 1138 NVIPTTVLSVDEQNKKIELSLRPATAKTRS--IKSHEDLKQGEIVDGIVKNVNDKGIFVY 1195
Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYH-----VGQVVKCRIMSSIPAS-RRINLSFMMKP 658
V+ F P S+L E Y +G+VV C S I + R ++ +K
Sbjct: 1196 LSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSRISLTLRESEINGDLKV 1255
Query: 659 TRVSEDDLVKLGSLVSGVVDVVTPNAVVV 687
+ D +K G + G + VT V V
Sbjct: 1256 LKTYSD--IKAGDVFEGTIKSVTDFGVFV 1282
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 136/330 (41%), Gaps = 37/330 (11%)
Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 278
SLE + G LT +V + + L P + +LA+N V P G
Sbjct: 996 SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054
Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
LQ V SIDR V + K I++ + G + RV I E V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104
Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 394
L TG I N F T K + K+N +L VD ++ + L+L P
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRPA 1161
Query: 395 LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
R+ SH +K G+I D D+G+ + L A+V +S +++ +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216
Query: 453 LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 509
+K YK V +++ + + L+ S G ++ T+SD+K G V +G + +V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSV 1275
Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
FG V+ V + L H++E KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304
>sp|Q9ZD28|RS1_RICPR 30S ribosomal protein S1 OS=Rickettsia prowazekii (strain Madrid E)
GN=rpsA PE=3 SV=1
Length = 568
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 156/362 (43%), Gaps = 24/362 (6%)
Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
IL+ S E S +K G+V++G V + +GA + G V L L +S + P
Sbjct: 186 ILEESRSEARDEMLSKIKEGIVLEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244
Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
+ + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301
Query: 598 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
+G F+ +G++G SE+ L P M +GQ V+ ++ R++LS
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSI-- 359
Query: 657 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
+ E+ L+K +G+++ + +T + +V+ G I ++
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415
Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
++KS K G E + ++L ++ E + L K L N Q++ + +++V V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLLPNPYQKI---SDEYKKSTIVKAVV 471
Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
I + G V ++TGF R + D + + + V + + + ++ + TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFKVHEEIDAKVVSIEKSTGRVLLS 531
Query: 830 LK 831
+K
Sbjct: 532 IK 533
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 136/613 (22%), Positives = 250/613 (40%), Gaps = 109/613 (17%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +K VVKG+VI + + IV G+K +P + + G +V E ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88
Query: 554 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
F P S++ + P +P+S+ ++ Q K + + +I SRR+ L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
K G ++ GVV +T + + G G + HL D + H + + E
Sbjct: 203 KEGIVLEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249
Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 776
F+Q ++ D ++ + L K N P DA + G V N + G
Sbjct: 250 FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304
Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
F+ L G S + +++ + K +GQ V +L+V++E R++LS+KQ C
Sbjct: 305 VFLELKDGLEGLV-HSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQ-C 362
Query: 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
QE+ L +K+ E IG++I+ + DFG+ V
Sbjct: 363 ---------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVL 396
Query: 895 EEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
+ D G I ++ + + G I+ +L + + V L +K + + +
Sbjct: 397 GNNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLLPNPY 454
Query: 947 REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 1006
++ + + V A+V +K++ LV+ L N G+ + +
Sbjct: 455 QKISDEYKK---------------STIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELS 497
Query: 1007 TQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYD 1062
+K QK F + + A V+++ S+ GR+LL +KA I+E + + + ++ +
Sbjct: 498 DEKDEQKPEMFKVHEEIDAKVVSIEKST--GRVLLSIKAHKIAERQKTLKEYGSSDNTTN 555
Query: 1063 VGSLVQAEITEIK 1075
+G ++ + E K
Sbjct: 556 MGDILANVLEEKK 568
>sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpsA PE=3 SV=1
Length = 392
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 119/261 (45%), Gaps = 26/261 (9%)
Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
++KV V +G GL++D+ P++ +ST S + +R K+E+ E + V
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168
Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
IL + +E + KAS E L G V+KGKV + +FGA V GGV L
Sbjct: 169 -ILSRKAVEQAENDVKKASLLESL-------NAGDVIKGKVARLTNFGAFVDI-GGVDGL 219
Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
+ +S + P VG E+ +V V+ ++RI+++ K TL +I + E
Sbjct: 220 VHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHED 279
Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
+ G + ++ G FV GVQG SE+ + P GQ V +I+
Sbjct: 280 D---VIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGI 336
Query: 644 IPASRRINLSFMMKPTRVSED 664
+ RI+LS +K T ED
Sbjct: 337 DEENERISLS--IKATLPKED 355
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 150/367 (40%), Gaps = 33/367 (8%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V ++ + L K +L SY ++L I +T++ K G V G
Sbjct: 71 VTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K +E+D+ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQAENDVKK 184
Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T V + G G + L+ EH + V+
Sbjct: 185 ASLLESLNAGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVDSPEDVVSV 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G E D ++ ++ ++ + LS K +L + + H + V+ G V + G FV
Sbjct: 240 GQEVDVKVKSVEKDAERISLSIKDTLPTPFESI---KGQFHEDDVIEGKVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL-----KQSC 834
+ G S+ + GQ V IL ++ E RI+LS+ K+
Sbjct: 297 EIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKEDV 356
Query: 835 CSSTDAS 841
S DA+
Sbjct: 357 VESDDAT 363
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 88/396 (22%), Positives = 162/396 (40%), Gaps = 80/396 (20%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
+ ++EG +T V+ +ED ++H F G +P + L+ EN VK G ++
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEA 69
Query: 283 VV------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL-- 318
V R ++ + YL D + VT+ +KG + +D+
Sbjct: 70 YVTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDVGQ 129
Query: 319 --LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
VP ++ST + + F G ++ P N R
Sbjct: 130 RGFVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------R 167
Query: 377 ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 436
++ + +AV N + + + GD+ + KV R+ G +DI
Sbjct: 168 VIL---SRKAVEQAEND--VKKASLLESLNAGDVI-KGKVARL-TNFGAFVDIGGVD--- 217
Query: 437 PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL--VF 491
V +S+++ E V E G V V++ + E ++ I + FE + F
Sbjct: 218 -GLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQF 276
Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
DV ++GKV+ + +FGA V+ GV+ L + ++ I PG+K + G ++
Sbjct: 277 HEDDV-----IEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNV 331
Query: 552 RVLGV--KSKRITVTHKKTL-----VKSKLAILSSY 580
++LG+ +++RI+++ K TL V+S A SY
Sbjct: 332 KILGIDEENERISLSIKATLPKEDVVESDDATTQSY 367
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 117/290 (40%), Gaps = 55/290 (18%)
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
+K G V+G V V VVV+ I G G IP L+ H H V+K G E +
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKQGDEIEA 69
Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
+ +D E+ S Y L S +QL ++ S+ + + ++ V +++ G
Sbjct: 70 YVTKIEVDEEND----SGVYIL--SKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGL 123
Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
V R GF P S D S + GQ++R + +++ E R+ LS K +
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQAE 179
Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
D +K ++L+S G VI+GKV +FG V
Sbjct: 180 NDV----------KKASLLES-------------LNAGDVIKGKVARLTNFGAFVDI--- 213
Query: 898 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
V G + +L+ V+S DV + VD+ +K+V D R
Sbjct: 214 GGVDGLVHVSELSHEHVDSPE-------DVVSVGQEVDVKVKSVEKDAER 256
>sp|Q49XT0|RS1_STAS1 30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA
PE=3 SV=1
Length = 393
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 22/250 (8%)
Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
++KV V +G GL++D+ P++ +ST SD E +V KL+ + + + RV
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDF-EGQVLKLKVEELDPANNRV- 168
Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 526
IL + +E L K E L G V++GKV + +FGA V GGV L
Sbjct: 169 ILSRKAVEALENAEKKDELLESL-------NEGDVIEGKVARLTNFGAFVDI-GGVDGLV 220
Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT 584
+ +S + P +G + ++ V S+RI+++ K TL +I + E
Sbjct: 221 HVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGEFNEGD 280
Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
+ G + ++ G FV GVQG SE+ PS GQVV +++
Sbjct: 281 ---VIEGTVVRLANFGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVD 337
Query: 645 PASRRINLSF 654
+ RI+LS
Sbjct: 338 VENERISLSI 347
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 156/386 (40%), Gaps = 37/386 (9%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V ++ IV G + P+ +S I P KVG E+
Sbjct: 11 NDIKEGDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L K +L SY ++L +T++ K G V G
Sbjct: 71 VTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 663
+GF P S + D E S + GQV+K ++ PA+ R+ LS K E
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQVLKLKVEELDPANNRVILS--RKAVEALENAEKK 184
Query: 664 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
D+L++ G ++ G V +T V + G G + L+ EH + V+
Sbjct: 185 DELLESLNEGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVKSPEDVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D +S + LS K +L + + + + + V+ G V + G FV
Sbjct: 240 GETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGE---FNEGDVIEGTVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
+ G S+ S+ GQ V +L V+ E RI+LS+K + +
Sbjct: 297 EIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN- 355
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSE 865
++E QS NGS+
Sbjct: 356 --------VIESDSETTQSYLDNGSD 373
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 16/189 (8%)
Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
GD+ + KV R+ G +DI V +S+++ E V+ E G V V+I
Sbjct: 194 GDVI-EGKVARL-TNFGAFVDIGGVD----GLVHVSELSHEHVKSPEDVVSIGETVNVKI 247
Query: 468 LGF-RHLEGLATGILKA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
+ E ++ I S FE + + G V++G V+ + +FGA V+ GV+
Sbjct: 248 KSVDKDSERISLSIKDTLPSPFESI---KGEFNEGDVIEGTVVRLANFGAFVEIKPGVQG 304
Query: 525 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAE 582
L + +S I P + + G + +VLG V+++RI+++ K TL ++ S +E
Sbjct: 305 LVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN--VIESDSE 362
Query: 583 ATDRLITHG 591
T + +G
Sbjct: 363 TTQSYLDNG 371
>sp|Q68WL4|RS1_RICTY 30S ribosomal protein S1 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpsA PE=3 SV=1
Length = 568
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 154/362 (42%), Gaps = 24/362 (6%)
Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
IL+ S E S +K GM+++G V + +GA + G V L L +S + P
Sbjct: 186 ILEESRSEARDEMLSKIKEGMILEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244
Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
+ + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301
Query: 598 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
+G F+ +G++G SE+ L P M +GQ V+ ++ R++LS
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSI-- 359
Query: 657 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
+ E+ L+K +G+++ + +T + +V+ G I ++
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415
Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
++KS K G E + ++L ++ E + L K N Q++ + ++V V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLSPNPYQKI---SDEYKKGTIVKAVV 471
Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
I + G V ++TGF R + D + + + V + + + ++ + TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFQVDEEIDAKVVSIEKSTGRVLLS 531
Query: 830 LK 831
+K
Sbjct: 532 VK 533
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 136/613 (22%), Positives = 250/613 (40%), Gaps = 109/613 (17%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +K VVKG+VI + + IV G+K +P + + G +V E ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88
Query: 554 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
F P S++ + P +P+S+ ++ Q K + + +I SRR+ L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
K G ++ GVV +T + + G G + HL D + H + + E
Sbjct: 203 KEGMILEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249
Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 776
F+Q ++ D ++ + L K N P DA + G V N + G
Sbjct: 250 FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304
Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
F+ L G S + +++ + K +GQ V +L+V++E R++LS+KQ C
Sbjct: 305 VFLELKDGLEGLV-HSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQ-C 362
Query: 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
QE+ L +K+ E IG++I+ + DFG+ V
Sbjct: 363 ---------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVL 396
Query: 895 EEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
+ D G I ++ + + G I+ +L + + V L +K + + +
Sbjct: 397 GNNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLSPNPY 454
Query: 947 REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 1006
++ + + V A+V +K++ LV+ L N G+ + +
Sbjct: 455 QKISDEYKK---------------GTIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELS 497
Query: 1007 TQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYD 1062
+K QK F + + A V+++ S+ GR+LL +KA I+E + + + ++ +
Sbjct: 498 DEKDEQKPEMFQVDEEIDAKVVSIEKST--GRVLLSVKAHKIAERQKTLKEYGSSDNTTN 555
Query: 1063 VGSLVQAEITEIK 1075
+G ++ + E K
Sbjct: 556 MGDILANVLEEKK 568
>sp|Q8NWM8|RS1_STAAW 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2)
GN=rpsA PE=3 SV=1
Length = 391
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)
Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
+ +AV N LL + + GD+ D KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217
Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
DA K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262
>sp|Q6G987|RS1_STAAS 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476)
GN=rpsA PE=3 SV=1
Length = 391
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)
Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
+ +AV N LL + + GD+ D KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217
Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
DA K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262
>sp|Q5HFU7|RS1_STAAC 30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL)
GN=rpsA PE=3 SV=1
Length = 391
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)
Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
+ +AV N LL + + GD+ D KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217
Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
DA K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262
>sp|Q7A5J0|RS1_STAAN 30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315)
GN=rpsA PE=1 SV=1
Length = 391
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIHGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 89/400 (22%), Positives = 166/400 (41%), Gaps = 90/400 (22%)
Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
+ +AV N LL + + GD+ KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVI-HGKVARLTQ-FGAFIDIGGVD- 217
Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
>sp|Q99U14|RS1_STAAM 30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rpsA PE=1 SV=1
Length = 391
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIHGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 89/400 (22%), Positives = 166/400 (41%), Gaps = 90/400 (22%)
Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
+ +AV N LL + + GD+ KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVI-HGKVARLTQ-FGAFIDIGGVD- 217
Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 582
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
>sp|Q6GGT5|RS1_STAAR 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252)
GN=rpsA PE=3 SV=1
Length = 391
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 28/355 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D ++ + LS K +L + + H N + G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDDIEGVVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 67/295 (22%)
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
DA K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDAK----------KDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIK 262
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 89/404 (22%), Positives = 168/404 (41%), Gaps = 90/404 (22%)
Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 284
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 285 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 318
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 379 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
+ +AV N LL + + GD+ D KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217
Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 489
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
F +D G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDDIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 550 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEATDR 586
++LG+ +++R++++ K TL V+S + +Y E+ +
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEE 373
>sp|Q4ULF1|RS1_RICFE 30S ribosomal protein S1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rpsA PE=3 SV=1
Length = 568
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/363 (20%), Positives = 153/363 (42%), Gaps = 24/363 (6%)
Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
IL+ S E S +K GMV++G V + +GA + G V L L +S +
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243
Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
P + + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKK---MTGKVTNF 300
Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
+G F+ +G++G SE+ L P +GQ V+ ++ R++LS
Sbjct: 301 ADYGVFIELRDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSI- 359
Query: 656 MKPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
+ E+ L+K +G+++ + +T + +V G I ++ +
Sbjct: 360 ---KQCQENPLIKFAENNPVGTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDK 414
Query: 710 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
++KS K G E + ++L ++ E + L K N Q++ + ++V
Sbjct: 415 GTDLLKSY-KKGDEIECKVLAINIEKEQVSLGVKQLSPNPYQEI---SDEYKKGTIVKAL 470
Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
+ + + G V ++ GF R++ D + + + + + + + ++ + TGRI L
Sbjct: 471 ITEVKDDGLEVLLNNKVAGFIKRTELSDEKDEQKPEMFKIDEEIEAKVVSIEKSTGRILL 530
Query: 829 SLK 831
S+K
Sbjct: 531 SVK 533
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 131/603 (21%), Positives = 247/603 (40%), Gaps = 105/603 (17%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +K VVKG+VI + + IV G+K +P + + G +V E ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDMVIVDV--GLKNEGRIPKSEFLALPEVGDVVEVFIE---KI 88
Query: 554 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
F P S++ + P +P+S+ ++ Q K + + +I SRR L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLDNIVVSRRAILEESRSEARDEMLSKI 202
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
K G ++ G V +T + + G G + HL D + H + + E
Sbjct: 203 KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249
Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
F+Q ++ D ++ + L K N + + + + G V N + G F
Sbjct: 250 FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGKKMTGKVTNFADYGVF 306
Query: 779 VRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
+ L G S + +++ + KT +GQ V +L+V++E R++LS+KQ C
Sbjct: 307 IELRDGLEGLV-HSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C-- 362
Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
QE+ L +K+ E +G++I+ + DFG+ V+
Sbjct: 363 -------QENPL-----------------IKFAENNPVGTIIKAPIRNITDFGIFVALGN 398
Query: 897 HSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
+ D G I ++ + + G I+ +L + + V L +K + + +
Sbjct: 399 NMD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGVKQLSPNPY-- 454
Query: 949 ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
+E S + V A++ VK++ L + L N G+ ++ + +
Sbjct: 455 -------------QEISDEYKKGTIVKALITEVKDDGLEVLL--NNKVAGFIKRTELSDE 499
Query: 1009 KFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVG 1064
K QK F + + A V+++ S+ GR+LL +KA I+E + + + ++ ++G
Sbjct: 500 KDEQKPEMFKIDEEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMG 557
Query: 1065 SLV 1067
++
Sbjct: 558 DIL 560
>sp|Q92HM4|RS1_RICCN 30S ribosomal protein S1 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rpsA PE=3 SV=1
Length = 568
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 153/361 (42%), Gaps = 20/361 (5%)
Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
IL+ S E S +K GMV++G V + +GA + G V L L +S +
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243
Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
P + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 244 PSEVLDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAIKEEFPVGKQ---MTGKVTNF 300
Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
+G F+ +G++G SE+ L P +GQ V+ ++ R++LS
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIK 360
Query: 656 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
P T+ +E++ V G+++ + +T + +V G I ++ +
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGT 416
Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
++KS K G E + ++L ++ E + L K N Q++ + ++V +
Sbjct: 417 DLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKALIT 472
Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
+ + G V ++ GF R++ D + + + + + + + ++ + TGRI LS+
Sbjct: 473 EVKDEGLEVLLNDKVAGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSV 532
Query: 831 K 831
K
Sbjct: 533 K 533
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 131/601 (21%), Positives = 245/601 (40%), Gaps = 101/601 (16%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +K VVKG+VI + + IV G+K +P + + G +V + ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDIIIVDV--GLKNEGRIPKSEFLALPEVGDVVEV---FIEKI 88
Query: 554 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
F P S++ + P +P+S+ ++ Q K + + +I SRR L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
K G ++ G V +T + + G G + HL D + H + + +
Sbjct: 203 KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LD 249
Query: 724 FDQ---LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 778
F+Q ++V+ + N +S ++S P +A + G V N + G F
Sbjct: 250 FNQKVKVMVIKFDEKNKRISLGIKQLDSN---PWEAIKEEFPVGKQMTGKVTNFADYGVF 306
Query: 779 VRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
+ L G S + +++ + KT +GQ V +L+V++E R++LS+KQ C
Sbjct: 307 IELKDGLEGLV-HSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C-- 362
Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
QE+ L K+ E +G++I+ + DFG+ V+
Sbjct: 363 -------QENPL-----------------TKFAENNPVGTIIKAPIRNITDFGIFVALGN 398
Query: 897 HSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
+ D G I ++ + + G I+ +L + + V L +K + + ++E
Sbjct: 399 NMD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQE 456
Query: 949 ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
+ +K K L I E+ E VL + I +SD +
Sbjct: 457 ISDEY------KKGTIVKAL--------ITEVKDEGLEVLLNDKVAGFIKRTELSDEKDE 502
Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGSL 1066
+ P+ F + + A V+++ S+ GR+LL +KA I+E + + + ++ ++G +
Sbjct: 503 QKPE-MFQIDKEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGDI 559
Query: 1067 V 1067
+
Sbjct: 560 L 560
>sp|Q5HP69|RS1_STAEQ 30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=rpsA PE=3 SV=1
Length = 392
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 32/372 (8%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + KVG E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V ++ T L K +L SY ++L + +T++ K G V G
Sbjct: 71 VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184
Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239
Query: 721 G-YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G ++ ++ +S + LS K +L + + H + V+ G V + G FV
Sbjct: 240 GEAVKVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC----C 835
+ G S+ ++ GQ V IL ++ + RI+LS+K +
Sbjct: 297 EIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENV 356
Query: 836 SSTDASFMQEHF 847
+DAS Q +
Sbjct: 357 IESDASTTQSYL 368
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 24/251 (9%)
Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
+++V V +G GL++D+ P++ +ST S + +R K+E+ E + V
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168
Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
IL + +E L KAS + L G V+ GKV + +FGA + GGV L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219
Query: 526 CPLPHMSEFEIVKPGKKFKVGA--ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 583
+ +S + P + VG ++ + + S+RI+++ K TL I + E
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279
Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
+ G + ++ G FV VQG SE+ P+ + GQ V +I+
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336
Query: 644 IPASRRINLSF 654
+ RI+LS
Sbjct: 337 DEDNERISLSI 347
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 45/237 (18%)
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
+K G V+G V V VVV+ I G G IP L+ H H V+K G E +
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69
Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
+ D E+ + Y L S +QL ++ S+ + + V+ V +++ G
Sbjct: 70 YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGL 123
Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179
Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
DA +K ++L S G VI+GKV +FG +
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGAFIDI 213
>sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rpsA PE=3 SV=2
Length = 566
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
++ G++V G V + +GA V GGV L + M+ + P + +G E+ ++L
Sbjct: 189 LQEGLIVSGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILK 247
Query: 556 VKSKRITVTHK-KTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
++I V+ K L +S Y E T IT G +T + +GCFV GV+G
Sbjct: 248 FDREKIRVSLGLKQLSDDPWTKISERYPEKTK--IT-GRVTNLTDYGCFVEIEEGVEGLV 304
Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
SE+ + PS M V VVK I+ RRI+L
Sbjct: 305 HVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGL 346
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 113/531 (21%), Positives = 213/531 (40%), Gaps = 87/531 (16%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
+PG +++G V+A+ +V +K+ +P + +F+ + + KVG ++ + +
Sbjct: 19 RPGSIIQGTVVAITKDTILVD--AKLKSESKIP-IDQFKNSQGELEVKVGDQIDVALDAI 75
Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
+ + K A L+ D G I K G V + ++ F P S
Sbjct: 76 EDGFGETLLSREKAKRHEAWLTLEQAYKDSKTVVGLINGKVKGGFTVELED-IRAFLPGS 134
Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
+ + P E +M+ G+ ++ +++ +++ SRR + R + ++ G
Sbjct: 135 LVDIRPVRE--TMHLEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEG 192
Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
+VSG+V +T V + G G + +A ++H + ++ G E ++L
Sbjct: 193 LIVSGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNIGDEVKIKIL 246
Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIETGCFVRFLG 783
D E + L K QL D S +P + G V N+ + GCFV
Sbjct: 247 KFDREKIRVSLGLK--------QLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIEE 298
Query: 784 RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
+ G S+ +D ++ SK V V+ ILD++ E RI+L LKQ C ++
Sbjct: 299 GVEGLVHVSE-MDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQ-CKNNPWME 356
Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------ 895
F S K+N GS + GK+ DFG+ + E
Sbjct: 357 F---------------SKKYNK-----------GSHVVGKIKSITDFGIFIGLEGSIDGL 390
Query: 896 -EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
SD+ I+ + + + G + A +L V + L +K + D F + S+ +
Sbjct: 391 VHLSDISWNISGEE-SVKKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPFAKYVSSHK 449
Query: 955 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY-NHSIGYASVSD 1004
V+ ++ + N +V+SL E+ + I + ++SD
Sbjct: 450 K---------------GSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISD 485
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 159/392 (40%), Gaps = 80/392 (20%)
Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSGI 272
+ L LET+QEG++++ VK++ D+G + G G L ++A N G
Sbjct: 182 RNLLLETLQEGLIVSGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNIGD 239
Query: 273 DVKPGLLLQGVVRSIDRTRKVV-----YLSSDPDT-VSKCVTKDLKGISIDLLVPGMMVS 326
+VK +L DR + V LS DP T +S+ + K ++
Sbjct: 240 EVKIKIL------KFDREKIRVSLGLKQLSDDPWTKISERYPEKTK------------IT 281
Query: 327 TRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA 386
RV ++ + G + G V + + T + + V IL +D R
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRR 341
Query: 387 VGLTL-----NPYLLHNRA--PPSHV--KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
+ L L NP++ ++ SHV K+ I D G+ + + S
Sbjct: 342 ISLGLKQCKNNPWMEFSKKYNKGSHVVGKIKSITD----------FGIFIGLEG---SID 388
Query: 438 AYVTISDVA-----EEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGL 489
V +SD++ EE V KKYK+G V +L E ++ GI L+ F
Sbjct: 389 GLVHLSDISWNISGEESV----KKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPFAKY 444
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV-----KPGKKFK 544
V +H K G +V G + +D+ +V + L ++S+ EI+ KP K K
Sbjct: 445 VSSH---KKGSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISD-EIMNVHDNKPWNKAK 500
Query: 545 VGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 576
+G E+V L K+ + + L K +L I
Sbjct: 501 IG-EIVEVKLNSIDKKERIIYLSILEKQELKI 531
>sp|P50889|RS1_LEULA 30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2
Length = 429
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 118/266 (44%), Gaps = 29/266 (10%)
Query: 408 GDIYDQSKVVRVDRGLGLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
GD D +KV+ RG GL++D+ P S A +SD+ + + + ++ + E
Sbjct: 144 GDTVD-AKVINAVRG-GLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPA 201
Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
R++ R A + +A VF+ V G VV+G V + FGA V GGV
Sbjct: 202 NARLILSRK----AVAAQELAAQLAEVFSKLSV--GEVVEGTVARLTDFGAFVDL-GGVD 254
Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYA 581
L + +S + P G ++ ++L + ++ RI+++ K T +
Sbjct: 255 GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQ-------RGPWD 307
Query: 582 EATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
EA D++ + G + +++ G FV G++G S++ PS + G V+
Sbjct: 308 EAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQ 367
Query: 638 CRIMSSIPASRRINLSFMM---KPTR 660
+++ PA RI+LS KP R
Sbjct: 368 VKVLDIKPAEERISLSMKALEEKPER 393
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 149/351 (42%), Gaps = 32/351 (9%)
Query: 496 VKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG----AELV 550
+K G VV G+++A+D+ A+V G + + P S+ + + K+G A ++
Sbjct: 52 IKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDRNINLADELKIGDTIEAVVI 111
Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
V K + KK L K S+AE + I + G + NGV+
Sbjct: 112 SNVTSDKEGVAYLLSKKRLDARKAWENLSFAEGD--TVDAKVINAV--RGGLIVDVNGVR 167
Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---- 666
GF P S + + + + + +K +++ PA+ R+ LS + L
Sbjct: 168 GFVPASMVAERFVSDLNQFKN--KDIKAQVIEIDPANARLILSRKAVAAQELAAQLAEVF 225
Query: 667 --VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
+ +G +V G V +T V + G G + ++ D +++ V+ G +
Sbjct: 226 SKLSVGEVVEGTVARLTDFGAFVDL---GGVDGLVHVSEISHDRVKNPA---DVLTKGDK 279
Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVR 780
D ++L LD E + LS I + Q+ P D A I SV+ G V + + G FV
Sbjct: 280 VDVKILALDTEKGRISLS-----IKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVE 334
Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
L + G S+ + + + S+ G V+ +LD+ RI+LS+K
Sbjct: 335 ILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMK 385
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 135/355 (38%), Gaps = 52/355 (14%)
Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
V G +G P E D + +G ++ ++S++ + + +++++ R
Sbjct: 71 AVVGLSTGEEGVVPAREYSDDRNINLADELKIGDTIEAVVISNVTSDKE-GVAYLLSKKR 129
Query: 661 VSEDDLVKLGSLVSG-VVDVVTPNAVVVYVIA-----KGYSKGTIPTEHLADHLEHATVM 714
+ + S G VD NAV +I +G+ ++ E L
Sbjct: 130 LDARKAWENLSFAEGDTVDAKVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQ--FK 187
Query: 715 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNII 773
IK Q++ +D ++ L+LS K ++ S + VV G V +
Sbjct: 188 NKDIKA-----QVIEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLT 242
Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
+ G FV LG + G S+ + + + G V IL +++E GRI+LS+K +
Sbjct: 243 DFGAFVD-LGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKAT 301
Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
D + Q GSV+EG V DFG V
Sbjct: 302 QRGPWDEAADQ---------------------------IAAGSVLEGTVKRVKDFGAFV- 333
Query: 894 FEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTV 941
E + G + Q++ +E SG +Q +LD+ AE + LS+K +
Sbjct: 334 -EILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKAL 387
>sp|P56008|RS1_HELPY 30S ribosomal protein S1 OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=rpsA PE=3 SV=1
Length = 556
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/400 (24%), Positives = 162/400 (40%), Gaps = 62/400 (15%)
Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
K + +V++KK + + K+ A + E + I G I K G V GV+ F R
Sbjct: 90 KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 148
Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
S L + H+G+ VK I+ + IN+S F + R E +L++
Sbjct: 149 SHSSL-----KNDANHIGKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA 203
Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 727
V GVV +TP + +V AKG +G + H ++ V + K G E + +
Sbjct: 204 TEPVLGVVRQITPFGI--FVEAKGI-EGLV---HYSEISHKGPVNPEKYYKEGDEVYVKA 257
Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
+ D E L LS K ++ + +++ + P + V NI G FV + G
Sbjct: 258 IAYDAEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEG 314
Query: 788 FAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
F S+ + Y VGQ + I+D++ + R+ +SLKQ D
Sbjct: 315 FLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFD------- 367
Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
+ SKH +G V+EGKV DFG ++ V G + +
Sbjct: 368 ---------VFESKHQ-----------VGDVLEGKVATLTDFGAFLNL---GGVDGLLHN 404
Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
H + + G VI+ IL + K ++ + LS K
Sbjct: 405 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 444
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 129/298 (43%), Gaps = 38/298 (12%)
Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSK 559
V G V + FG V+ G++ L +S V P K +K G E+ + + + +
Sbjct: 207 VLGVVRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKR 265
Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGW-----ITKIEKHGCFVRFYNGVQGFAP 614
R++++ K T I + E D+L G+ ++ IE +G FV N ++GF
Sbjct: 266 RLSLSIKAT-------IEDPWEEIQDKL-KPGYAIKVVVSNIEHYGVFVDIGNDIEGFLH 317
Query: 615 RSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLG 670
SE+ D P++ VGQ + +I+ P +RR+ +S +P V E ++G
Sbjct: 318 VSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKH-QVG 376
Query: 671 SLVSGVVDVVTP-----NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
++ G V +T N V + + + DH + V+K
Sbjct: 377 DVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKV--------- 427
Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
++L ++ + + LSAK+ + + ++ A +SV+ G V +I + G F+ G
Sbjct: 428 KILKINKKDKKISLSAKHLVTSPTEEF---AQKHKTDSVIQGKVVSIKDFGVFINADG 482
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 26/249 (10%)
Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
D L PG + V +I GV + G + + + ++ N + ++++ +
Sbjct: 284 DKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVK 343
Query: 377 ILFVDPTSRAVGLTLNPYLLHNR---APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
I+ +DP +R + ++L L NR S +VGD+ + D G L L
Sbjct: 344 IIDIDPKNRRLRVSLKQ--LTNRPFDVFESKHQVGDVLEGKVATLTDFGAFLNLG----- 396
Query: 434 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE---GLATGILKASAFEGLV 490
+ D ++ +K + YK G ++V+IL + L+ L S E
Sbjct: 397 -GVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFA 455
Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAE 548
H K V++GKV+++ FG + G + + + E + P KK K+G E
Sbjct: 456 QKH---KTDSVIQGKVVSIKDFGVFINADG-------IDVLIKNEDLNPLKKDEIKIGQE 505
Query: 549 LVFRVLGVK 557
+ V+ ++
Sbjct: 506 ITCVVVAIE 514
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 28/270 (10%)
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFIT--HHQLAGATVESGSVIQAAILDVAKAERL 933
++IEGK+ N G +V E V F++ H L G ++A I+ V K
Sbjct: 121 AIIEGKIVGKNKGGYIV---ESQGVEYFLSRSHSSLKNDANHIGKRVKACIIRVDKENHS 177
Query: 934 VDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVNAIVEIVKENYLVLSLPE 992
+++S K RF E N RQ + K EA++ LGV + + I E + L
Sbjct: 178 INISRK-----RFFEVNDKRQLEVSKELLEATEPVLGVVRQITPF-GIFVEAKGIEGLVH 231
Query: 993 YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 1052
Y+ V+ P+K + G V V A+ + RL L +KA E
Sbjct: 232 YSEISHKGPVN-------PEKYYKEGDEV--YVKAIAYDAEKRRLSLSIKATIEDPWEEI 282
Query: 1053 KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 1112
+ K G ++ ++ I+ + + G G +H++E++ DK+ V + +
Sbjct: 283 QDKLKP-----GYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKN--VSHPNNYLS 335
Query: 1113 IGQTVTARIIAKSNKPDMKKSFLWELSIKP 1142
+GQ + +II K + L +L+ +P
Sbjct: 336 VGQEIDVKIIDIDPKNRRLRVSLKQLTNRP 365
>sp|Q9ZKF6|RS1_HELPJ 30S ribosomal protein S1 OS=Helicobacter pylori (strain J99)
GN=rpsA PE=3 SV=1
Length = 552
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 158/400 (39%), Gaps = 62/400 (15%)
Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
K + +V++KK + + K+ A + E + I G I K G V GV+ F R
Sbjct: 86 KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 144
Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
S L + H+G+ +K I+ + IN+S F + R E +L++
Sbjct: 145 SHSSL-----KNDANHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISKELLEA 199
Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 727
V GVV +TP + V KG H ++ V + K G E + +
Sbjct: 200 TEPVLGVVRQITPFGIFVKF------KGIDGLVHYSEISHKGPVNPEKYYKEGDEVYVKA 253
Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
+ D E L LS K ++ + +++ + P + V NI G FV + G
Sbjct: 254 IAYDEEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEG 310
Query: 788 FAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
F S+ + D + S VGQ + I+D++ + R+ +SLKQ D
Sbjct: 311 FLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVF----- 365
Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
SKH +G ++EGKV DFG ++ V G + +
Sbjct: 366 -----------ESKHQ-----------VGDIVEGKVATLTDFGAFLNL---GGVDGLLHN 400
Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
H + + G VI+ IL + K ++ + LS K
Sbjct: 401 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 440
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 88/203 (43%), Gaps = 7/203 (3%)
Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
EK YKEG V V+ + + + + +KA+ + +KPG +K V ++ +G
Sbjct: 240 EKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYG 299
Query: 514 AIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570
V ++ + +S + + P VG E+ +++ + K++R+ V+ K+ L
Sbjct: 300 VFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQ-LT 358
Query: 571 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
+ S + D I G + + G F+ GV G + D + Y
Sbjct: 359 NRPFDVFESKHQVGD--IVEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHY 415
Query: 631 HVGQVVKCRIMSSIPASRRINLS 653
+G V+K +I+ ++I+LS
Sbjct: 416 KIGDVIKVKILKINKKDKKISLS 438
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 26/269 (9%)
Query: 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFIT--HHQLAGATVESGSVIQAAILDVAKAERL 933
++IEGK+ N G +V E V F++ H L G I+A I+ V K
Sbjct: 117 AIIEGKIVGKNKGGYIV---ESQGVEYFLSRSHSSLKNDANHIGKRIKACIIRVDKENHS 173
Query: 934 VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 993
+++S K RF E N RQ + K EA+ + V +V + + +
Sbjct: 174 INISRK-----RFFEVNDKRQLEISKELLEAT------EPVLGVVRQITPFGIFVKFKGI 222
Query: 994 NHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 1053
+ + Y+ +S + P+K + G V V A+ RL L +KA E +
Sbjct: 223 DGLVHYSEIS-HKGPVNPEKYYKEGDEV--YVKAIAYDEEKRRLSLSIKATIEDPWEEIQ 279
Query: 1054 RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 1113
K G ++ ++ I+ + + G G +H++E++ DK+ V + +
Sbjct: 280 DKLKP-----GYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKN--VSHPSHYLSV 332
Query: 1114 GQTVTARIIAKSNKPDMKKSFLWELSIKP 1142
GQ + +II K + L +L+ +P
Sbjct: 333 GQEIDVKIIDIDPKNRRLRVSLKQLTNRP 361
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 153/366 (41%), Gaps = 41/366 (11%)
Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
FE L+ + S V+ G VV +V+ VD+ A V G GV+ + L ++ + VK
Sbjct: 4 FEDLLNSVSQVETGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADINDFVK 63
Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
G+ V LV R V+G + +T K ++++ A + + G T+
Sbjct: 64 VGEVLDV---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118
Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 656
K G V F GV+GF P S L D ++ VGQ +I R LS +
Sbjct: 119 KGGLSVEF-EGVRGFIPASML--DTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREV 175
Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-- 714
+ G L G DVVT +A+ S G D L H T +
Sbjct: 176 VEAATAAARAEVFGKLAVG--DVVTGK------VARITSFGAFIDLGGVDGLVHLTELSH 227
Query: 715 ------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVV 765
KSV+ G E + ++L L+ E + LS K ++ P D + VV
Sbjct: 228 ERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATVPG-----PWDGVEQKLAKGDVV 282
Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
G V + + G FV L + G S+ + + + VGQ V+ +L+VN++ R
Sbjct: 283 EGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAER 342
Query: 826 ITLSLK 831
++LS+K
Sbjct: 343 VSLSIK 348
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 6/169 (3%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G VV GKV + SFGA + GGV L L +S V P VG E+ ++L +
Sbjct: 194 GDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNE 252
Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
+ R++++ K T+ + A+ + G + ++ G FV G+ G S
Sbjct: 253 EEGRVSLSLKATVPGPWDGVEQKLAKGD---VVEGTVKRLTDFGAFVEVLPGIDGLVHVS 309
Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
++ P VGQ V+ +++ + R++LS R ++++
Sbjct: 310 QISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERPAQEE 358
>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
GN=rpsA PE=3 SV=1
Length = 572
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 135/608 (22%), Positives = 247/608 (40%), Gaps = 112/608 (18%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +KPG VVKG+V+ ++ + G+K +P SEF ++ P K +LV
Sbjct: 34 SHIKPGTVVKGQVVDINEVVVVDV---GLKNEGRIPK-SEF-LLSPAHKLPEIGDLV--- 85
Query: 554 LGVKSKRITVTHKKTLVKSK---------LAILSSYAEATDRLITHGWITKIEKHGCFVR 604
V ++ KTL + K L ++ S E D I G + G F
Sbjct: 86 -DVYIEKTEGHSGKTLSREKAIKEELWGQLELICSKGEFVDGTI-FGRV-----KGGFTV 138
Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTR 660
+GV F P S++ + P +PSS+ ++ Q K + + +I SRR L R
Sbjct: 139 DLSGVVAFLPGSQVDVRPIKDPSSIMNIRQPFKILSMDKKLGNIVVSRRAILEESRSEAR 198
Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKS 716
+K G ++ G V +T + + G G + HL D + H + +
Sbjct: 199 DEMLSKIKEGMILEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWARVNHPSEV-- 250
Query: 717 VIKPGYEFDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
EF+Q ++ + E+ + L K N +++ + + G V N
Sbjct: 251 -----LEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKIKEE---FPVGKKMTGKVTN 302
Query: 772 IIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
+ G F+ L G S+ + + KT +GQ V +L+V++E R++LS+
Sbjct: 303 FADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSI 362
Query: 831 KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 890
KQ C Q++ L+ K+ E +G+VI+ + DFG+
Sbjct: 363 KQ--C--------QQNPLI-----------------KFAETNPVGTVIKAPIRNITDFGI 395
Query: 891 VVSFEEHSDVY---GFITHHQLAGA---TVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
V+ ++ D G IT T + G ++ +L + + + L +K + +
Sbjct: 396 FVALSDNLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQISLGIKQLTPN 455
Query: 945 RFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 1003
++ A+ ++ K A KD G+ VN + + G+ S
Sbjct: 456 PYQGIADEYKKGTVVKAVVTAIKDDGLEVLVN------------------DKAAGFIKKS 497
Query: 1004 DYNTQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKS 1059
D + +K QK F Q + A V ++ S+ ++LL +KA I+E + + + +
Sbjct: 498 DLSDEKEEQKPEMFAVDQEIEAKVASIEKSTN--KILLSIKAYKIAERQKALKEYGSSDN 555
Query: 1060 SYDVGSLV 1067
+ ++G ++
Sbjct: 556 TTNMGDIL 563
>sp|Q83E09|RS1_COXBU 30S ribosomal protein S1 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rpsA PE=1 SV=1
Length = 551
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 115/485 (23%), Positives = 195/485 (40%), Gaps = 85/485 (17%)
Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
T +D++PG +VK V+ V IV G+K+ +P SEF +P VG E
Sbjct: 13 LTETDLRPGALVKATVVEVRPDRVIVN--AGLKSEGIIP-ASEFRNEEP----HVGDEF- 64
Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK---IEK-HGCFVRFY 606
F V+ T L + K +++E ++ G + K IE+ G F
Sbjct: 65 FVVIEASDNGFGETR---LSREKARRAKAWSE-LEKAYKAGEMVKGVIIERVKGGFTVDL 120
Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTR 660
N V+ F P S + + P +P Y + + +I+ +++ SRR + R
Sbjct: 121 NSVRAFLPGSLVDVKPVRDPG--YLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAER 178
Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 719
+ + ++ G + GV+ +T V + G G + +A ++H + + +V
Sbjct: 179 QARLEELQEGQEIKGVIKNITDYGAFVDL---GGVDGLLHITDMAWGRVKHPSDLLNV-- 233
Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNII 773
G E ++L D + + L K QL D +P NS V G V NI
Sbjct: 234 -GDEVHVKVLKFDRDKKRVSLGMK--------QLADDPWAKIERRYPVNSRVFGKVTNIT 284
Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLK 831
+ GCFV+ + G S+ +D ++ SK G+ V +L+++ E RI+L +K
Sbjct: 285 DYGCFVKLEEGVEGLVHTSE-LDWTNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIK 343
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
Q C + F ++H +EKI GKV DFG+
Sbjct: 344 Q-CKRNPWQEFAEKH-EKDEKIT-------------------------GKVRSITDFGMF 376
Query: 892 VSFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
+ E D+ G + ++ + G +QA IL + + L +K +
Sbjct: 377 IGLE--GDIDGLVHLSDISWTESGEEAIRNYKKGDEVQAVILGIDPERERISLGIKQLEG 434
Query: 944 DRFRE 948
D F E
Sbjct: 435 DPFME 439
>sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC
10987) GN=BCE_1625 PE=3 SV=1
Length = 382
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +K G VV+G V + FGA V GGV L + +S + +P + + G ++ +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242
Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
L V ++RI+++ K ++ +A D I G + ++ G FV GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENIAGEVKAGD--IREGIVKRLVTFGAFVEILPGVEG 299
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
S++ P+ + +GQ VK +++ A +RI+LS + V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAFEENNVTED 354
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 142/367 (38%), Gaps = 52/367 (14%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 643
+ G +TK+E+ V G P SEL + S + + Q+++ +I+ +
Sbjct: 20 VVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQILELKIIKLEEND 79
Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
+ S+R + + + + G + V + +VV + +G+ ++ H
Sbjct: 80 LVLSKR---AVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDLGVRGFIPASLVEVH 136
Query: 704 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 762
+ +K ++ LD E + ++LS K + +A S +
Sbjct: 137 YVEDFTDYKGKTLAVK-------IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEG 189
Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
VV G V + + G FV +G + G S+ + S+ GQ V+ +L V+++
Sbjct: 190 DVVEGTVQRLTDFGAFVN-VGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDAD 248
Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
T RI+LS+K + E IA E+K G + EG V
Sbjct: 249 TQRISLSIKAAQPGPW------------ENIA---------GEVKA------GDIREGIV 281
Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVD 935
FG V V G + Q+A V E G ++ +L+V AE+ +
Sbjct: 282 KRLVTFGAFVEI--LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRIS 339
Query: 936 LSLKTVF 942
LS+K F
Sbjct: 340 LSIKEAF 346
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 148/355 (41%), Gaps = 29/355 (8%)
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
V +++ G VV G V V+ +V + P+ ++ I K ++ L
Sbjct: 9 VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQIL 68
Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
+++ ++ + ++ K V ++ A + + T + + I G V GV
Sbjct: 69 ELKIIKLEENDLVLS--KRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124
Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 663
+GF P S + + E + Y G+ + +I+ R+ LS + +
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182
Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 721
+K G +V G V +T V V G G + H++ + H V + V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235
Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
+ ++L +D ++ + LS I +AQ P + A + + G V ++ G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGAF 290
Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
V L + G S+ + + ++ +GQ V+ +L+V+ RI+LS+K++
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEA 345
>sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rpsA PE=1 SV=1
Length = 565
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 147/357 (41%), Gaps = 42/357 (11%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
+++ G V+ G V + +GA V GG+ L + ++ + P + +G + ++
Sbjct: 196 QNLEEGQVIDGVVKNITDYGAFVDL-GGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKI 254
Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNG 608
+ + ++ RI++ K+ L I + Y A T R +T I +G FV G
Sbjct: 255 IKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGR------VTNITDYGAFVELEPG 308
Query: 609 VQGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSED 664
++G SE+ P + Q V+ +++ RRI+L M P V +
Sbjct: 309 IEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVE 368
Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI---------PTEHLADHLEHATVMK 715
+GS V G +V +++ G G + P E + D+ + ++K
Sbjct: 369 KH-PVGSTVEG--EVKNKTEFGLFLGLDGDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVK 425
Query: 716 SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
+V+ L +D E + L K L P D + +VV V ++ E+
Sbjct: 426 AVV---------LDVDVEKERISLGVK-QLEGDPFAEPGD---VKKGAVVTCEVLDVKES 472
Query: 776 GCFVRFLGR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
G V+ +G F RS+ + S + VG+ V + ++ + + ++ +S+K
Sbjct: 473 GIDVQIVGTDFNTFIKRSELARDRNDQRSDRFAVGEKVDARVIQFDKKARKVQVSIK 529
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 105/485 (21%), Positives = 189/485 (38%), Gaps = 81/485 (16%)
Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK--KFKVG-- 546
F +++ V+KGKV+A++ A++ + PL E PG+ + KVG
Sbjct: 22 FAGGNLQESSVIKGKVVAIEKDMAVIDVGLKTEGRVPLR-----EFAGPGRDNEIKVGDT 76
Query: 547 AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
E+ + ++ K + L + +++ G I + G F
Sbjct: 77 VEVFLDRIENALGEAVLSRDKARREESWGKLEKAFQNNEKVF--GVIFN-QVKGGFTVDL 133
Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVS 662
+G F PRS++ + P + + + + Q + R +I SRR L R
Sbjct: 134 DGAVAFLPRSQVDIRPIRDVAPLMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQE 193
Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPTEHLADHLEHATV 713
++ G ++ GVV +T V +V + + PTE L TV
Sbjct: 194 LVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLT---IGQTV 250
Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNI 772
+IK +++E+ + L K L + Q + + +P N+ G V NI
Sbjct: 251 KVKIIK----------INHETHRISLGMKQLLDDPWQGIEAK----YPLNARFTGRVTNI 296
Query: 773 IETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+ G FV + G S+ + + K Q V +L+V+S RI+L LK
Sbjct: 297 TDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLK 356
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
Q+ + + F+++H +GS +EG+V +FG+
Sbjct: 357 QTMRNPWEV-FVEKH--------------------------PVGSTVEGEVKNKTEFGLF 389
Query: 892 VSFEEHSDVYGFI----THHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFI 943
+ + DV G + +L G V + G +++A +LDV + + L +K +
Sbjct: 390 LGLD--GDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERISLGVKQLEG 447
Query: 944 DRFRE 948
D F E
Sbjct: 448 DPFAE 452
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 91/416 (21%), Positives = 161/416 (38%), Gaps = 83/416 (19%)
Query: 726 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
Q+L +D N+++S + L + A+Q ++ V+ G V NI + G FV LG
Sbjct: 164 QILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVD-LGG 222
Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
+ G + + ++ +GQ+V+ I+ +N ET RI+L +KQ
Sbjct: 223 IDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQ------------ 270
Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 898
L G E K + + + G+V D+G V E H
Sbjct: 271 -----------LLDDPWQGIEAK----YPLNARFTGRVTNITDYGAFVELEPGIEGLIHV 315
Query: 899 DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT-------VFIDRFREANS 951
+ + G V + ++ +L+V +R + L LK VF+++
Sbjct: 316 SEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKH----- 370
Query: 952 NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 1011
V TV V+ E L L L G +SD + K P
Sbjct: 371 -----------------PVGSTVEGEVKNKTEFGLFLGLD--GDVDGMVHLSDLD-WKLP 410
Query: 1012 QKQ----FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLV 1067
+Q F G V A V+ + R+ L +K + + KK G++V
Sbjct: 411 GEQVIDNFKKGDMVKAVVLDVDVEKE--RISLGVKQLEGDPFAEPGDVKK------GAVV 462
Query: 1068 QAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
E+ ++K + ++ G F+ I +E+ D+++ + F+ +G+ V AR+I
Sbjct: 463 TCEVLDVKESGIDVQIVGTDFNTFIKRSELARDRNDQRSDRFA---VGEKVDARVI 515
>sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1
Length = 580
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
G+ V ++ + ++GA V+ G++ L + MS + V P + FK G + +L V
Sbjct: 392 GLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVD 451
Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
+SK+IT+ K+ I + + T + G +TKI G FV NG++G
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEAMFPAGT---VISGVVTKITAFGAFVELQNGIEGLIHV 508
Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
SEL P + + +G+ V +++ P ++++LS
Sbjct: 509 SELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLS 546
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 73/354 (20%), Positives = 141/354 (39%), Gaps = 32/354 (9%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G KG V + FG + G + L + M+ I P + ++ EL +L V
Sbjct: 220 GEYRKGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278
Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
+ R+ + K+ I Y L G I K+ +G F+ G++G S
Sbjct: 279 EKGRVALGLKQKEHNPWEDIEKKYPPGKRVL---GKIVKLLPYGAFIEIEEGIEGLIHIS 335
Query: 617 ELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 671
E+ +PS + + G V+ ++S +I+L +K T + D ++ +G
Sbjct: 336 EMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTERNPWDNIEEKYPIGL 393
Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ----- 726
V+ + +T +V + +G I H+ + +K V P F +
Sbjct: 394 HVNAEIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGNSVE 444
Query: 727 --LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
+L +D ES + L K N ++ + +V+ G V I G FV
Sbjct: 445 AVILSVDKESKKITLGVKQLSSNPWNEI---EAMFPAGTVISGVVTKITAFGAFVELQNG 501
Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
+ G S+ D A + +G++V + ++ ++ + +++LS+K+ +
Sbjct: 502 IEGLIHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNA 555
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 75/356 (21%), Positives = 153/356 (42%), Gaps = 37/356 (10%)
Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
+ ++++PG ++KG V+ ++ +V G+K+ +P MSEF + + +GAE+
Sbjct: 45 SDNEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLVLGAEVEV 99
Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
+ + + ++ ++ +K + + + ++ E I G IT+ K G V G+
Sbjct: 100 YLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GM 155
Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED--- 664
+ F P S++ D + +VG+V + +I+ R I +S +++ R+S+
Sbjct: 156 EAFLPGSQI--DNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAEL 213
Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
+ + +G GVV +T V ++ G T+ + H + M E
Sbjct: 214 IEQISIGEYRKGVVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264
Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
+Q +L +D E + L K N + + P V G + ++ G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVLGKIVKLLPYGAF 321
Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
+ + G S+ + D S+ G V + +L + + G+I+L LKQ+
Sbjct: 322 IEIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQT 377
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 109/470 (23%), Positives = 187/470 (39%), Gaps = 76/470 (16%)
Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
D+ ++ G+++ G V + + VVV V K S+G IP D E + V
Sbjct: 46 DNEIQPGAILKGTVVDINKDFVVVDVGLK--SEGVIPMSEFIDSSEGLVLGAEV---EVY 100
Query: 724 FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
DQ ++E ++LS + + +Q +H S+V G + ++ G V
Sbjct: 101 LDQA---EDEEGKVVLSREKA--TRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI-- 153
Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
+ F P S+ + + +L YVG+ IL +N E I +S ++
Sbjct: 154 GMEAFLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVERRNIVVSRRE----------- 200
Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------EH 897
L E+I+ +EL +E IG +G V DFGV + +
Sbjct: 201 ---LLEAERIS-------KKAEL--IEQISIGEYRKGVVKNITDFGVFLDLDGIDGLLHI 248
Query: 898 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
+D+ H VE ++ IL V K + V L LK +E N +K
Sbjct: 249 TDMTWKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIEK 300
Query: 958 KKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQK 1013
K + + + IV+++ + E I G +S+ + K P +
Sbjct: 301 KYPPGK--------RVLGKIVKLLPYGAFI----EIEEGIEGLIHISEMSWVKNIVDPSE 348
Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
G V A V+++ G++ L LK +TE + ++K Y +G V AEI
Sbjct: 349 VVNKGDEVEAIVLSIQKDE--GKISLGLK---QTERNPWDNIEEK--YPIGLHVNAEIKN 401
Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
+ ++ G G IHI++++ K V + FK G +V A I++
Sbjct: 402 LTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNSVEAVILS 449
>sp|Q48082|RS1_HAEIN 30S ribosomal protein S1 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rpsA PE=3 SV=1
Length = 549
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 192 GSEVKGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDK 250
Query: 559 KRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
R V+ K L + A ++ +L G +T + +GCFV +GV+G SE
Sbjct: 251 DRTRVSLGLKQLGQDPWAAIAENHPVNSKLT--GKVTNLTDYGCFVEILDGVEGLVHVSE 308
Query: 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
+ + PS + +G V+ ++ RRI+L
Sbjct: 309 MDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGL 346
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 148/365 (40%), Gaps = 59/365 (16%)
Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 653
G F NGV+ F P S + P E + +G+ ++ +++ +++ SRR +
Sbjct: 118 GGFTVELNGVRAFLPGSLVDTRPAREADHL--LGKELEFKVIKLDQKRNNVVVSRRAVIE 175
Query: 654 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 712
R + + GS V GVV +T V + G G + +A ++H +
Sbjct: 176 SENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDL---GGVDGLLHITDMAWKRVKHPS 232
Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVC 770
++ G E ++L D + + + L K Q + + HP NS + G V
Sbjct: 233 ---EIVNVGDEVTVKVLKFDKDRTRVSLGLK----QLGQDPWAAIAENHPVNSKLTGKVT 285
Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITL 828
N+ + GCFV L + G S+ +D ++ SK +G +V +L+++ E RI+L
Sbjct: 286 NLTDYGCFVEILDGVEGLVHVSE-MDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISL 344
Query: 829 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888
LKQ C ++ F + HN G + GK+ DF
Sbjct: 345 GLKQ-CKANPWTQF---------------ADTHNK-----------GDKVTGKIKSITDF 377
Query: 889 GVVVSFE-------EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
G+ + E SD+ I+ + A + G + A +L V + + L +K +
Sbjct: 378 GIFIGLEGGIDGLVHLSDISWSISGEE-AVRQYKKGDEVSAVVLAVDAVKERISLGIKQL 436
Query: 942 FIDRF 946
D F
Sbjct: 437 EEDPF 441
>sp|Q44653|RS1_BUCAP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=rpsA PE=3 SV=1
Length = 559
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
++ G+ +KG V + +GA V GGV L + M+ + P + VG E+ ++L
Sbjct: 189 LQEGIEIKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKILK 247
Query: 556 VKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
+R V+ K+ +AI + Y E + G +T + +GCFV GV+G
Sbjct: 248 FDKERTRVSLGLKQLGEDPWIAISNRYPEG---IKLSGRVTNLTDYGCFVEIEEGVEGLV 304
Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
SE+ + PS + V +V ++ RRI+L
Sbjct: 305 HVSEMDWTNKNIHPSKVVAVNNIVDVIVLDIDEERRRISLGL 346
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 124/308 (40%), Gaps = 42/308 (13%)
Query: 546 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI--------THGWITKIE 597
G EL F+V+ + KR V +V + I S + D+L+ G + +
Sbjct: 149 GKELEFKVIKLDQKRNNV-----VVSRRAVIESENSAERDQLLESLQEGIEIKGIVKNLT 203
Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
+G FV GV G +++ PS + +VG + +I+ R++L
Sbjct: 204 DYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGL--- 259
Query: 658 PTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEH 710
++ ED + + G +SG V +T V + +G H+++ +
Sbjct: 260 -KQLGEDPWIAISNRYPEGIKLSGRVTNLTDYGCFVEI-----EEGVEGLVHVSEMDWTN 313
Query: 711 ATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQQLPSDASHIHPNSV-VHG 767
+ S + ++VLD E + L K IN Q+ S H + V G
Sbjct: 314 KNIHPSKVVAVNNIVDVIVLDIDEERRRISLGLKQCKINPWQEF----SETHKKGIHVSG 369
Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSK---AVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
+ +I + G F+ G + G S + G+ A K Y G + + +L V++E
Sbjct: 370 KIKSITDFGIFIGLKGGIDGLVHLSDISWKISGEEA--VKNYKKGDEISAVVLQVDAERE 427
Query: 825 RITLSLKQ 832
RI+L +KQ
Sbjct: 428 RISLGIKQ 435
>sp|Q8RI52|ISPH_FUSNN 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=ispH PE=3 SV=1
Length = 827
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 121/506 (23%), Positives = 205/506 (40%), Gaps = 89/506 (17%)
Query: 187 FHVGQLVSCIVLQL---DDDKKEI--GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
+ VG V ++ L DDD++ I +RKI + + +T+ + V T +K
Sbjct: 345 YKVGDTVEVLITGLSEEDDDQEYITASRRKIEVEKNWEKIEDSFKNKTILDAKV-TKKIK 403
Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK-PGLLLQGVVRSID------RTRKVV 294
GY++ L + GFLP N+L+E S + K G +Q +V+ I + RK+
Sbjct: 404 G----GYLVEAFL--YPGFLP-NSLSEISDSEEKVNGKKIQVIVKDIKMDPKDKKNRKIT 456
Query: 295 YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
Y D + K+ G+++ G +V V +L+ G+ + T G + I
Sbjct: 457 YSVKDIRLAEQ--EKEFAGLAV-----GQIVDCVVTEVLDFGLAVDINT-LKGFIHI--- 505
Query: 355 QNTFPTTNWK------NDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPS 403
+WK ++Y K+ A ++ +D R V L++ +P+ +
Sbjct: 506 ----SEVSWKRLDKLSDNYKVGDKIKAVVVSLDEAKRNVKLSIKKLEEDPWA----TVAN 557
Query: 404 HVKVGD--------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
KV D + V + G+ L+ I S T V ++D
Sbjct: 558 EFKVDDEIEGIVTKVLPYGAFVEIKPGVEGLVHI-SDFSWTKKKVNVADYV--------- 607
Query: 456 KYKEGSCVRVRILGFRHLEG--LATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
KE ++VRI H E L GI L A+ +E D V+KGKV+ V
Sbjct: 608 --KEREKIKVRITDL-HPEDRKLKLGIKQLVANPWET---AEKDFAIDTVIKGKVVEVKP 661
Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIV-KPGKKFKVGAELVFRV--LGVKSKRITVTHKKT 568
FG V+ G+ A H S++ V + KF++G E+ ++ L + +K+I + K
Sbjct: 662 FGIFVEIADGIDAFV---HSSDYNWVGEEIPKFEIGNEVELKITELDLNNKKIKGSL-KA 717
Query: 569 LVKSKLA-ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
L KS + Y T I + G F+ G+ GF P +
Sbjct: 718 LRKSPWEHAMEEYKVGT---TVEKKIKTVADFGLFIELIKGIDGFIPTQFASKEFIKNIR 774
Query: 628 SMYHVGQVVKCRIMSSIPASRRINLS 653
+ G VVK +++ +++I LS
Sbjct: 775 DKFSEGDVVKAQVVEVNKETQKIKLS 800
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/338 (20%), Positives = 135/338 (39%), Gaps = 21/338 (6%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-K 557
G +V V V FG V +K + +S + K +KVG ++ V+ + +
Sbjct: 477 GQIVDCVVTEVLDFGLAVDI-NTLKGFIHISEVSWKRLDKLSDNYKVGDKIKAVVVSLDE 535
Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
+KR K L + A +++ + D + G +TK+ +G FV GV+G S+
Sbjct: 536 AKRNVKLSIKKLEEDPWATVANEFKVDDEI--EGIVTKVLPYGAFVEIKPGVEGLVHISD 593
Query: 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINL---SFMMKPTRVSEDDLVKLGSLV 673
+ + +K RI P R++ L + P +E D + +++
Sbjct: 594 FSWTKKKVNVADYVKEREKIKVRITDLHPEDRKLKLGIKQLVANPWETAEKDFA-IDTVI 652
Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 733
G V V P + V + + G H +D+ V + + P +E + L
Sbjct: 653 KGKVVEVKPFGIFVEI-----ADGIDAFVHSSDY---NWVGEEI--PKFEIGNEVELKIT 702
Query: 734 SSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
+L + + ++ P + + + V + + + G F+ + + GF P
Sbjct: 703 ELDLNNKKIKGSLKALRKSPWEHAMEEYKVGTTVEKKIKTVADFGLFIELIKGIDGFIPT 762
Query: 792 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
A ++ + G V++ +++VN ET +I LS
Sbjct: 763 QFASKEFIKNIRDKFSEGDVVKAQVVEVNKETQKIKLS 800
>sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpsA PE=3 SV=1
Length = 569
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)
Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
G V V +L + EG + LK + G+ V ++ + ++GA V+
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412
Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
G++ L + MS + V P + FK G + +L V +SK+IT+ K+ I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472
Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
+ +D G +TKI G FV NG++G SEL P + + +G V
Sbjct: 473 EVMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529
Query: 637 KCRIMSSIPASRRINLSF 654
+++ P ++++LS
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 99/470 (21%), Positives = 184/470 (39%), Gaps = 74/470 (15%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
S+V PG ++KG V+ + +V G+K+ +P MSEF + + VGAE+ +
Sbjct: 47 SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101
Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
+ + K + K T + IL+ E + I G IT+ K G V G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156
Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
F P S++ D + +VG+V + +I+ I RR ++ +++ R+S+
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213
Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
+ + +G G+V +T V ++ G T+ + H + M E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264
Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
+Q +L +D E + L K N + + P V G + ++ G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321
Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
+ + G S+ + D ++ G V +L + + G+I+L LKQ+ +
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381
Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
D +EEK + IG + ++ ++G V E
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414
Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
H +I + G+ ++A IL V K + + L +K +
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQL 464
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 85/390 (21%), Positives = 142/390 (36%), Gaps = 69/390 (17%)
Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
G V NI + G F+ G + G + + S+ + Q + IL V+ E GR+
Sbjct: 225 GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283
Query: 827 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
L LKQ +EH E+ E K + G + GK+ +
Sbjct: 284 ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRVRGKIVKLL 316
Query: 887 DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
+G + EE H ++ + V G ++ +L + K E + L LK
Sbjct: 317 PYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLK- 375
Query: 941 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
+ E +G+ T I + V P I +
Sbjct: 376 ------------QTKHNPWDNIEEKYPIGLRVTAE-IKNLTNYGAFVELEPGIEGLIHIS 422
Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSS---TAGRLLLLLKAISETETSSSKRAKK 1057
+S P + F G +V A ++++ S T G L E E
Sbjct: 423 DMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEVM------- 475
Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
+ VGS + +T+I ++ G G IH++E+++ +E++ S IG V
Sbjct: 476 ---FPVGSDISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLS---IGDKV 529
Query: 1118 TARIIAKSNKPDMKKSFLWELSIKPSMLTG 1147
+A++I PD KK LSIK ++ G
Sbjct: 530 SAKVIKLD--PDHKKV---SLSIKEFLVHG 554
>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
Length = 642
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 6/161 (3%)
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
++ G VV+G+V + FGA V+ GV L + +S + KP K+G ++ VL
Sbjct: 481 LEEGQVVEGEVKRLTDFGAFVEIE-GVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLS 539
Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
V ++K+++++ KK + Y + + G + + G FV+ GV G
Sbjct: 540 VDKENKKLSLSVKKLTENPWNNVEEKYPVGS---VVLGKVIRFADFGAFVKLEPGVDGLV 596
Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
SE+ +PS +VG+ +K +I+ ++I LS
Sbjct: 597 HISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSI 637
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 151/362 (41%), Gaps = 46/362 (12%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
G I ++ + F+ G P+SE+ D G + ++ VG + +I+ A +
Sbjct: 314 GEIIQVSEKEVFLNINYKRDGVIPKSEID-DDGKDLKELFTVGDKIVAKIIKLKDADNYV 372
Query: 651 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA--KGYSKGTIPTEHLADHL 708
LS + + R +K ++VV V +IA KG + IP H+ L
Sbjct: 373 VLS-VKELQREQGYKEIKEAFENKTTLNVVVKEDVKGGIIASYKGI-RIFIPASHV--EL 428
Query: 709 EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVH 766
H +K I ++ + + +++++ +L++ ++ + + + VV
Sbjct: 429 FHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLSKEKEKVEETVWNKLEEGQVVE 488
Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
G V + + G FV G + G S+ G+ + +G ++ +L V+ E ++
Sbjct: 489 GEVKRLTDFGAFVEIEG-VDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKL 547
Query: 827 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
+LS+K+ L + N E E + +GSV+ GKV
Sbjct: 548 SLSVKK-----------------------LTENPWNNVE----EKYPVGSVVLGKVIRFA 580
Query: 887 DFGVVVSFEEHSDVYGF-----ITHHQLAGAT--VESGSVIQAAILDVAKAERLVDLSLK 939
DFG V E D G I+H ++A + + G I+A IL+V+ E+ + LS++
Sbjct: 581 DFGAFVKLEPGVD--GLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSIR 638
Query: 940 TV 941
V
Sbjct: 639 EV 640
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 131/308 (42%), Gaps = 38/308 (12%)
Query: 543 FKVGAELVFRVLGVK-SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
F VG ++V +++ +K + V K L + + EA + T + K + G
Sbjct: 352 FTVGDKIVAKIIKLKDADNYVVLSVKELQREQG--YKEIKEAFENKTTLNVVVKEDVKGG 409
Query: 602 FVRFYNGVQGFAPRSELGL---DPGCEPSSMYHVGQVVKCRIM--------SSIPASRRI 650
+ Y G++ F P S + L D E ++G+ I+ + I ASRR
Sbjct: 410 IIASYKGIRIFIPASHVELFHVDNLKE-----YIGKSFDVAIIEYSTKKRQTKIVASRRA 464
Query: 651 NLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
LS + +V E KL G +V G V +T V + +G H+++ +
Sbjct: 465 LLS--KEKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEI------EGVDGLLHVSE-I 515
Query: 709 EHATVMK--SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSV 764
V K V+K G + +L +D E+ L LS K N + +P SV
Sbjct: 516 SWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTENPWNNVEEK----YPVGSV 571
Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
V G V + G FV+ + G S+ + A S VG+ +++ IL+V+SE
Sbjct: 572 VLGKVIRFADFGAFVKLEPGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEK 631
Query: 825 RITLSLKQ 832
+I LS+++
Sbjct: 632 KIGLSIRE 639
>sp|P38016|RS1_CHLMU 30S ribosomal protein S1 OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=rpsA PE=3 SV=2
Length = 570
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 6/198 (3%)
Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
G V V +L + EG + LK + G+ V ++ + ++GA V+
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412
Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
G++ L + MS + V P + FK G + +L V +SK+IT+ K+ I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472
Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
+ + +D G +TKI G FV NG++G S+L P + + +G V
Sbjct: 473 EAMFPVGSD---ISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIGDKV 529
Query: 637 KCRIMSSIPASRRINLSF 654
+++ P ++++LS
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 95/469 (20%), Positives = 187/469 (39%), Gaps = 72/469 (15%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S+V+PG ++KG V+ + +V G+K+ +P MSEF + + VGAE+ +
Sbjct: 47 SEVQPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLSVGAEVEVYL 101
Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
+ + ++ ++ +K + + + ++ E I G IT+ K G V G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GMEA 157
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED---- 664
F P S++ D + +VG+V + +I+ I RR ++ +++ R+S+
Sbjct: 158 FLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAELI 214
Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
+ + +G G+V +T V ++ G T+ + H + M E
Sbjct: 215 EQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VEL 265
Query: 725 DQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
+Q +L +D E + L K N + + P V G + ++ G F+
Sbjct: 266 NQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAFI 322
Query: 780 RFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
+ G S+ + D ++ G V +L + + G+I+L LKQ+ +
Sbjct: 323 EIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPW 382
Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE-- 896
D +EEK + IG + ++ ++G V E
Sbjct: 383 DN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPGI 415
Query: 897 ----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
H +I + G+ ++A IL V K + + L +K +
Sbjct: 416 EGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQL 464
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 84/387 (21%), Positives = 150/387 (38%), Gaps = 63/387 (16%)
Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
G V NI + G F+ G + G + + S+ + Q + IL V+ E GR+
Sbjct: 225 GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283
Query: 827 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
L LKQ +EH E+ E K + G + GK+ +
Sbjct: 284 ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRVRGKIVKLL 316
Query: 887 DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
+G + EE H ++ + V G ++ +L + K E + L LK
Sbjct: 317 PYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQ 376
Query: 941 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
E N ++K +G+ T I + V P I +
Sbjct: 377 T------EHNPWDNIEEKY-------PIGLRVTAE-IKNLTNYGAFVELEPGIEGLIHIS 422
Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 1060
+S P + F G +V A ++++ S ++ L +K ++ + + ++
Sbjct: 423 DMSWIKKVSHPSELFKKGNTVEAVILSVDKESK--KITLGVKQLT-----PNPWDEIEAM 475
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
+ VGS + +T+I ++ G G IH+++++D +E++ S IG V+A+
Sbjct: 476 FPVGSDISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILS---IGDKVSAK 532
Query: 1121 IIAKSNKPDMKKSFLWELSIKPSMLTG 1147
+I PD KK LSIK + G
Sbjct: 533 VIKLD--PDHKKV---SLSIKEFLAHG 554
>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis (strain 168)
GN=ypfD PE=1 SV=1
Length = 382
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 6/158 (3%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
G V+ GKV + FGA V GG+ L + +S + KP + G E+ +VL V
Sbjct: 188 GSVLDGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDR 246
Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
++RI+++ K TL + + D L G + ++ G FV GV+G S
Sbjct: 247 DNERISLSIKDTL-PGPWNQIGEKVKPGDVL--EGTVQRLVSFGAFVEILPGVEGLVHIS 303
Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
++ P + GQ VK +++ RI+LS
Sbjct: 304 QISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSM 341
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 144/344 (41%), Gaps = 26/344 (7%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKA-LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
G VVKG V V+ V+ ++ + P+ +S + K KV EL +V V+
Sbjct: 16 GDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVVKVDDELDLKVTKVE 75
Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
+ ++ + L E + + + + K G V GV+GF P S
Sbjct: 76 DDALILSKRAVDADRAWEDLEKKFETKE--VFEAEVKDVVKGGLVVDI--GVRGFIPAS- 130
Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVK---LGS 671
L E + Y G+ + ++ R+ LS + + +L++ +GS
Sbjct: 131 LVEAHFVEDFTDYK-GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGS 189
Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGYEFD-QLL 728
++ G V +T V + G G + H++ L H+ V K V++ G E ++L
Sbjct: 190 VLDGKVQRLTDFGAFVDI---GGIDGLV---HIS-QLSHSHVEKPSDVVEEGQEVKVKVL 242
Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
+D ++ + LS K +L Q+ + P V+ G V ++ G FV L + G
Sbjct: 243 SVDRDNERISLSIKDTLPGPWNQI---GEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGL 299
Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
S+ + + GQ+V+ +LDVN RI+LS+++
Sbjct: 300 VHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRE 343
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 119/280 (42%), Gaps = 45/280 (16%)
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQ 726
++G +V G+V V V V +I S G IP L+ H+E A+ V+K E D
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQS-GIIPISELSSLHVEKAS---DVVKVDDELD- 68
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
L V E L+LS + +++ + V V ++++ G V R
Sbjct: 69 LKVTKVEDDALILSKRA--VDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDIGVR-- 124
Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
GF P S D T Y G+++ +++++ + R+ LS ++ S A+ QE
Sbjct: 125 GFIPASLVEAHFVEDF--TDYKGKTLSLLVVELDRDKNRVILS-HRAVVESEQANKKQE- 180
Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
+LQS + +GSV++GKV DFG +F + + G +
Sbjct: 181 --------LLQSLE-------------VGSVLDGKVQRLTDFG---AFVDIGGIDGLVHI 216
Query: 907 HQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLK 939
QL+ + VE G ++ +L V + + LS+K
Sbjct: 217 SQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIK 256
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 464
++VG + D KV R+ G +DI V IS ++ V K +EG V+
Sbjct: 185 LEVGSVLD-GKVQRL-TDFGAFVDIGGID----GLVHISQLSHSHVEKPSDVVEEGQEVK 238
Query: 465 VRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
V++L R E ++ I K + VKPG V++G V + SFGA V+ GV+
Sbjct: 239 VKVLSVDRDNERISLSI-KDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVE 297
Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567
L + +S I P + + G + +VL V +RI+++ ++
Sbjct: 298 GLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRE 343
>sp|P14128|RS1_PROSP 30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3
SV=1
Length = 378
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
+++ GM VKG V + +GA V GGV L + M+ + P + VG E+ +V
Sbjct: 82 ENLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKV 140
Query: 554 LGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
L +R +++ K+ +AI Y E T G +T + +GCFV GV+G
Sbjct: 141 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTK---LTGRVTNLTDYGCFVEIEEGVEG 197
Query: 612 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
SE+ + PS + +VG VV+ ++ RRI+L
Sbjct: 198 LVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGL 241
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 121/317 (38%), Gaps = 45/317 (14%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 81 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 138
Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 139 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 186
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
+ G V + + T + N V +L +D R + L L
Sbjct: 187 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 246
Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
NP+ HN+ K+ I D + ++ G+ L+ + +VA
Sbjct: 247 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVHLSDIS---------WNVAG 297
Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
EE + KK E + V +++ R L L F + + K G +V GKV
Sbjct: 298 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL---AATKKGAIVTGKVT 354
Query: 508 AVDSFGAIVQFPGGVKA 524
AVD+ GA V+ GV+
Sbjct: 355 AVDAKGATVELTLGVEG 371
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 17/143 (11%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
K++ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 245 KSNPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLEGGIDGLV---HLSDISWNVAGE 298
Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDR-LITHGWIT 594
+++K G E+ VL V ++R + +L +LA ++Y AT + I G +T
Sbjct: 299 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNYLAATKKGAIVTGKVT 354
Query: 595 KIEKHGCFVRFYNGVQGFAPRSE 617
++ G V GV+G+ SE
Sbjct: 355 AVDAKGATVELTLGVEGYLRASE 377
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 143/368 (38%), Gaps = 65/368 (17%)
Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 653
G F NG++ F P S + + P + + + G+ ++ +++ +++ SRR +
Sbjct: 13 GGFTVELNGIRAFLPGSLVDVRPVRDTTHLE--GKELEFKVIKLDQKRNNVVVSRRAVIE 70
Query: 654 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 712
R + ++ G V G+V +T V + G G + +A ++H +
Sbjct: 71 SESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS 127
Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVH 766
++ G E ++L D E + + L K QL D A + +
Sbjct: 128 ---EIVNVGDEITVKVLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLT 176
Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETG 824
G V N+ + GCFV + G S+ +D ++ SK VG V +LD++ E
Sbjct: 177 GRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 235
Query: 825 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
RI+L LKQ C S+ F + H G +EGK+
Sbjct: 236 RISLGLKQ-CKSNPWQQFAETHNK--------------------------GDRVEGKIKS 268
Query: 885 SNDFGVVVSFEEHSD--VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSL 938
DFG+ + E D V+ +AG + G I A +L V + L +
Sbjct: 269 ITDFGIFIGLEGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGV 328
Query: 939 KTVFIDRF 946
K + D F
Sbjct: 329 KQLAEDPF 336
>sp|P57395|RS1_BUCAI 30S ribosomal protein S1 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpsA PE=3 SV=1
Length = 558
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+++ GM VKG V + +GA V GGV L + M+ + P + VG E+ ++L
Sbjct: 188 NLQEGMHVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKIL 246
Query: 555 GVKSKRITVTH--KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
+R V+ K+ +AI Y E T G +T + +GCFV GV+G
Sbjct: 247 KFDRERTRVSLGLKQLGEDPWIAISKRYPEETK---LSGRVTNLTDYGCFVEIEEGVEGL 303
Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
SE+ + PS + V VV+ ++ RRI+L
Sbjct: 304 VHVSEMDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGL 346
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 76/367 (20%), Positives = 157/367 (42%), Gaps = 41/367 (11%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
+PG +++G +++++ +V G+K+ +P + +F+ + +VG ++ + +
Sbjct: 19 RPGSIIRGTIVSIEK--DMVLVDAGLKSESAIP-VEQFQNSQGLLDIQVGDQIDVALDAI 75
Query: 557 KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
+ ++ +K IL E ++ +I I + G F N ++ F P
Sbjct: 76 EDGFGETLLSREKAKRHEAWLILEKAHEKSETVIG---IINGKVKGGFTVELNDIRAFLP 132
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
S + + P + +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRPVRD--TIHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G V G+V +T V + G G + +A ++H + ++ G E + +
Sbjct: 191 EGMHVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEINIK 244
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIETGCFVRF 781
+L D E + + L K QL D S +P + G V N+ + GCFV
Sbjct: 245 ILKFDRERTRVSLGLK--------QLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEI 296
Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
+ G S+ +D ++ SK V V +LD++ E RI+L LKQ C +
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQ-CKINPW 354
Query: 840 ASFMQEH 846
F + H
Sbjct: 355 KEFSETH 361
Score = 34.7 bits (78), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 123/325 (37%), Gaps = 45/325 (13%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMHVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEINI 243
Query: 283 VVRSIDRTRKVV-----YLSSDP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
+ DR R V L DP +SK ++ K +S RV ++ + G
Sbjct: 244 KILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETK------------LSGRVTNLTDYG 291
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
+ G V + + T + + V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKI 351
Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
NP+ H + K+ I D + ++ G+ L+ + + P E
Sbjct: 352 NPWKEFSETHKKGVHVLGKIKSITDFGIFIGLNGGIDGLVHLSDISWTIP--------GE 403
Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
E V K KK E S V +++ R L L+ F + H K G ++ G +
Sbjct: 404 EAVVKY-KKNDEISAVVLQVDAERERISLGIKQLEEDPFNTYIANH---KKGAIITGIIK 459
Query: 508 AVDSFGAIVQFPGGVKALCPLPHMS 532
++D IV+ P ++ + L ++
Sbjct: 460 SLDKKNIIVKLPENLEGVIKLTEIT 484
>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN)
GN=rpsA PE=3 SV=2
Length = 481
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 82/381 (21%), Positives = 150/381 (39%), Gaps = 53/381 (13%)
Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
D I G I K+++ + +G P EL + +P+ + VG V+ +++
Sbjct: 34 NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93
Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
R+ LS + + + L + V G+V V +++ + +G+ ++
Sbjct: 94 EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDIGLRGFLPASL- 152
Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
+E V G E + +++ LD +N++LS + L + ++ S+ +
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205
Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
+ ++ G V +I+ G FV LG + G S+ S+ VG V +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLD 264
Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
V+ + R++LSLK + F + H IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297
Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 931
GKV + FG V EE + G + +LA VE G ++D+
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355
Query: 932 RLVDLSLKTV---FIDRFREA 949
R + LSLK +I+ F A
Sbjct: 356 RRISLSLKQANEDYIEEFDPA 376
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 83/397 (20%), Positives = 166/397 (41%), Gaps = 48/397 (12%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G +V+G ++ VD ++ + + P +S V P + VG E+ VL +
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95
Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
K R+ ++ K+ + + + E + + G + ++ K G + G++GF P S
Sbjct: 96 KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGIVIEVVKGGLILDI--GLRGFLPAS 151
Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
E+ +P ++G+ ++ +I+ +++ SRR L R + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G++ GVV + V + G G + L+ H++H + V++ G E +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGNEVTVE 261
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
+L +D + + LS K + + + + H +V G V ++ G FVR +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317
Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
G S+ + + VG ++D++ E RI+LSLKQ+ + +++E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA-----NEDYIEE 372
Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
K M S G+ + +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDPDSNEWLEGF 407
>sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1b PE=3 SV=1
Length = 305
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 28/267 (10%)
Query: 577 LSSYAEATDR--------LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
L +A+A D+ HG I + G +V F GF P ELGL P E
Sbjct: 12 LDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAEIED 71
Query: 629 MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAV 685
+ + + S ++ LS + S ++L +L G + VV V
Sbjct: 72 SFPLDSAWDFLVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGV 131
Query: 686 VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 745
V V +G +G IP HL ++ V+K +L + +++ L+L+ +
Sbjct: 132 VGDV--EGL-RGFIPRSHLMHKDNMDALVGQVLKA-----HILEANQDNNKLVLTQRR-- 181
Query: 746 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD-LSK 804
I A+ + I ++ G V I G FV G +TG S+ V G R D L+
Sbjct: 182 IQQAESM----GKIAAGNIYEGKVAKIQPYGVFVEIEG-VTGLLHVSQ-VSGTRVDSLNT 235
Query: 805 TYYVGQSVRSNILDVNSETGRITLSLK 831
+ GQ++ + +++ RI+LS +
Sbjct: 236 LFAFGQAISVYVQEIDEYKNRISLSTR 262
Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 740 SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
SA +SL A+ L H VHG +C G +V F G+ GF P +
Sbjct: 7 SAAFSLDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPH 66
Query: 800 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
A++ ++ + + + ++ G++ LS +Q
Sbjct: 67 AEIEDSFPLDSAWDFLVTSEQNDEGQVRLSRRQ 99
>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
SV=1
Length = 481
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G +V+G ++ VD ++ + + P +S V P + VG E+ VL +
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95
Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
K R+ ++ K+ + + + E + + G + ++ K G + G++GF P S
Sbjct: 96 KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151
Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
E+ +P ++G+ ++ +I+ +++ SRR L R + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G++ GVV + V + G G + L+ H++H + V++ G E +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
+L +D + + LS K + + + + H +V G V ++ G FVR +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317
Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
G S+ + + VG ++D++ E RI+LSLKQ+ T E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371
Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
F K M S G+ + +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 50/364 (13%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
I G I K+++ + +G P EL + +P+ + VG V+ +++
Sbjct: 38 IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97
Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
R+ LS + + + L + V G V V +++ + +G+ ++
Sbjct: 98 GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152
Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
+E V G E + +++ LD +N++LS + L + ++ S+ +++
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKG 209
Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
++ G V +I+ G FV LG + G S+ S+ VG V +LDV+ +
Sbjct: 210 TIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268
Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
R++LSLK + F + H IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301
Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
+ FG V EE + G + +LA VE G ++D+ R +
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359
Query: 936 LSLK 939
LSLK
Sbjct: 360 LSLK 363
Score = 37.7 bits (86), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
G +V GKV + FGA V+ G++ L + ++E + P + VG + + +V+ +
Sbjct: 294 GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDL 353
Query: 557 KSKRITVTHKKT-------LVKSKLAILSSYAEATDRLITHG-------WITKIEKH 599
+ +RI+++ K+ +K + SY E + + G W+ EK
Sbjct: 354 ERRRISLSLKQANEDYTEEFDPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGFEKQ 410
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 115/287 (40%), Gaps = 46/287 (16%)
Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL- 727
G +V G + V + V++ + GY ++G IP L+ ++H V+ G E + L
Sbjct: 36 GDIVEGTIVKVDRDEVLLDI---GYKTEGVIPARELS--IKHDVDPNEVVSVGDEVEALV 90
Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
L +++ L+LS K + A + + + V G V +++ G + L G
Sbjct: 91 LTKEDKEGRLILSKKRAQYERA--WGTIEALKEKDEAVKGTVIEVVKGGLILDI--GLRG 146
Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
F P S + DL Y+G+ + + I++++ + LS +++ T + E F
Sbjct: 147 FLPASLVEMRRVRDLQP--YIGKEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRSE-F 202
Query: 848 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 907
L LQ G++ +G V +FG V V G +
Sbjct: 203 L-----NNLQK----------------GTIRKGVVSSIVNFGAFVDL---GGVDGLVHVS 238
Query: 908 QLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
+L+ V+ G + +LDV V LSLK D +R
Sbjct: 239 ELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWR 285
>sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1
Length = 557
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDR-LITHGWIT 594
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 655 MMK 657
K
Sbjct: 520 RAK 522
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 69/473 (14%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
S + + P + +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRPVRD--TLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 900 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA
PE=1 SV=1
Length = 557
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDR-LITHGWIT 594
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 655 MMK 657
K
Sbjct: 520 RAK 522
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 69/473 (14%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
S + + P + +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRPVRD--TLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 900 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=rpsA PE=3 SV=1
Length = 557
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDR-LITHGWIT 594
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 655 MMK 657
K
Sbjct: 520 RAK 522
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 69/473 (14%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
S + + P + +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRPVRD--TLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 900 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3
SV=1
Length = 557
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDR-LITHGWIT 594
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 655 MMK 657
K
Sbjct: 520 RAK 522
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 187/473 (39%), Gaps = 69/473 (14%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
S + + P + +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRPVRD--TLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 900 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P37985|RS1_DICD3 30S ribosomal protein S1 OS=Dickeya dadantii (strain 3937) GN=rpsA
PE=3 SV=2
Length = 557
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
EE + KK E + V +++ R L L F + + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVN---KKGAIVTGKVT 459
Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
AVD+ GA V+ GV+ S I VG E+ + GV K V+
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRIEDATLVMSVGDEIEAKYTGVDRKNRVVS 516
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 104/477 (21%), Positives = 194/477 (40%), Gaps = 77/477 (16%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +PG +V+G V+A+D +V G+K+ +P + +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-VEQFKNAQGEIEIQVGDEVDVALD 73
Query: 555 GVKS---KRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQ 610
V+ + + K ++ L + +Y E AT + +G + G F NG++
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWLMLEKAYEESATVTGVINGKV-----KGGFTVELNGIR 128
Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
F P S + + P +++ G+ ++ +++ +++ SRR + R
Sbjct: 129 AFLPGSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLL 186
Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
+ ++ G V G+V +T V + G G + +A ++H + ++ G E
Sbjct: 187 ENLQEGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDE 240
Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGC 777
++L D E + + L K QL D A + + G V N+ + GC
Sbjct: 241 ITVKVLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGC 292
Query: 778 FVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
FV + G S+ +D ++ SK VG V +LD++ E RI+L LKQ C
Sbjct: 293 FVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CK 350
Query: 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
++ F + H G +EGK+ DFG+ + +
Sbjct: 351 ANPWQQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLD 384
Query: 896 EHSD--VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
D V+ +AG + G I A +L V + L +K + D F
Sbjct: 385 GGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDR-LITHGWIT 594
+++K G E+ VL V ++R + +L +LA ++Y + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVT 459
Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
++ G V +GV+G+ SE D + + + VG ++ + +R ++LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRIEDATLVMSVGDEIEAKYTGVDRKNRVVSLSI 519
Query: 655 MMK 657
K
Sbjct: 520 RAK 522
>sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis
GN=rps1 PE=3 SV=2
Length = 263
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 23/155 (14%)
Query: 689 VIAKGYSKGT-----------IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
V+ KG++KG +P HL + + IK +LL ++ +S+NL
Sbjct: 119 VMIKGFNKGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKL-----KLLNVEEKSNNL 173
Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
+LS + +LI+ A +S++ +++ G + I G F++ +G L G S+
Sbjct: 174 ILSHRRALISQA------SSNLIVGNIIEGIINQITPYGLFIK-VGNLKGLVHISEINIK 226
Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
+S + +G ++++ I+ V+ + GR++LS+K
Sbjct: 227 NLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMKH 261
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 1051 SSKRA---KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
S +RA + S+ VG++++ I +I P L +K G G +HI+E+N +E +
Sbjct: 176 SHRRALISQASSNLIVGNIIEGIINQITPYGLFIKVG-NLKGLVHISEINIKN---LEQI 231
Query: 1108 FSNFKIGQTVTARII 1122
S FKIG T+ A II
Sbjct: 232 SSQFKIGDTIKAVII 246
Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 49/254 (19%), Positives = 116/254 (45%), Gaps = 20/254 (7%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
D+ G +V G + + + G +V + A P+ +S + + + F +L
Sbjct: 23 DLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNNFTSLNINDTREFFLL 82
Query: 555 --GVKSKRITVTHKKT-LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
++SK++ ++ ++ +++ I AE + + + I K G + G+ G
Sbjct: 83 DYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDS---LLNVMIKGFNKGGMIINL-EGISG 138
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGS 671
F P S LG + S ++ + +K ++++ S + LS + +L+ +G+
Sbjct: 139 FVPNSHLG---NFQKSEQFN-NKFIKLKLLNVEEKSNNLILSHRRALISQASSNLI-VGN 193
Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV- 729
++ G+++ +TP + + V G KG + H+++ ++++ + S K G +++
Sbjct: 194 IIEGIINQITPYGLFIKV---GNLKGLV---HISEINIKNLEQISSQFKIGDTIKAVIIH 247
Query: 730 LDNESSNLLLSAKY 743
+D + L LS K+
Sbjct: 248 VDKKQGRLSLSMKH 261
>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021)
GN=rpsA PE=3 SV=2
Length = 568
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 726 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
++L +D N+++S + L S A+Q ++ VV G V NI + G FV LG
Sbjct: 161 EILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVD-LGG 219
Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
+ G + + S+ +GQ V+ I+ +N ET RI+L +KQ
Sbjct: 220 IDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQ------------ 267
Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
L+S +G K + +G I G V D+G V E
Sbjct: 268 -----------LESDPWDGIGAK----YPVGKKISGTVTNITDYGAFVELE 303
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 134/603 (22%), Positives = 228/603 (37%), Gaps = 86/603 (14%)
Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
F +D+ G V KG V A++ AIV V+ PL EF KVG E+
Sbjct: 19 FAKTDLAEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPL---KEFGAKAKDGTLKVGDEVE 75
Query: 551 FRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
V +++ ++ +K + L EA +R+ G I K G F +G
Sbjct: 76 VYVERIENALGEAVLSREKARREESWQRLEVKFEAGERV--EGIIFNQVK-GGFTVDLDG 132
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SSIPASRRINLSFMMKPTRVSED 664
F PRS++ + P + + + H Q + M +I SRR L R
Sbjct: 133 AVAFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIV 192
Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
++ G +V GVV +T V + G G + +A + H + ++ G +
Sbjct: 193 QNLEEGQVVEGVVKNITDYGAFVDL---GGIDGLLHVTDMAWRRVNHPS---EILNIGQQ 246
Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGC 777
Q++ ++ E+ + L K QL SD + + G V NI + G
Sbjct: 247 VKVQIIRINQETHRISLGMK--------QLESDPWDGIGAKYPVGKKISGTVTNITDYGA 298
Query: 778 FVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
FV + G S+ + + K Q V +L+V+ RI+L LKQ+ +
Sbjct: 299 FVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLEN 358
Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
A F H G+ +EG+V +FG+ + +
Sbjct: 359 PWQA-FAHSH--------------------------PAGTEVEGEVKNKTEFGLFIGLD- 390
Query: 897 HSDVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
DV G + L G V G V++A +LDV + + L +K + D E
Sbjct: 391 -GDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERISLGIKQLGRDAVGE 449
Query: 949 ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
A AS +L + V+A V V + + + L + + +D +
Sbjct: 450 A-------------AASGELRKNAVVSAEVIGVNDGGIEVRLVNHEDVTAFIRRADLSRD 496
Query: 1009 KFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSL 1066
+ Q+ +F GQ+V A V +L + I+E + + ++ S +G +
Sbjct: 497 RDEQRPERFSVGQTVDARVTNFSKKDRKIQLSIKALEIAEEKEAVAQFGSSDSGASLGDI 556
Query: 1067 VQA 1069
+ A
Sbjct: 557 LGA 559
>sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsA PE=3
SV=1
Length = 559
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 157/364 (43%), Gaps = 39/364 (10%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
D++PG ++ G V+ +D G V G+K+ +P + +F + KVG E+ +
Sbjct: 17 DMQPGAIITGIVVDID--GDWVTVHAGLKSEGVIP-VEQFYNEQGELTIKVGDEVHVALD 73
Query: 555 GVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
V+ T ++ +++ I+ A A D ++ K++ G F NG++ F
Sbjct: 74 AVEDGFGETKLSREKAKRAESWIVLEAAFAADEVVKGVINGKVK--GGFTVDVNGIRAFL 131
Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLV 667
P S + + P + + + G+ ++ +++ +++ SRR L R + + +
Sbjct: 132 PGSLVDVRPVRDTTHLE--GKELEFKVIKLDQKRNNVVVSRRSVLEAENSAEREALLESL 189
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD- 725
+ G V G+V +T V + G G + +A ++H + ++ G E D
Sbjct: 190 QEGQQVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRIKHPS---EIVNVGDEIDV 243
Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVR 780
++L D E + + L K QL D + + V V N+ + GCF
Sbjct: 244 KVLKFDRERNRVSLGLK--------QLGEDPWVAIKARYPEGTRVMARVTNLTDYGCFAE 295
Query: 781 FLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
+ G S+ +D ++ SK VG V +LD++ E RI+L +KQ C S+
Sbjct: 296 LEEGVEGLVHVSE-MDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQ-CKSNP 353
Query: 839 DASF 842
F
Sbjct: 354 WEDF 357
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 4/178 (2%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFR 552
S G + G + ++ FG + GG+ L L +S E+ + ++FK G EL
Sbjct: 359 SQFNKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETV 418
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQG 611
+L V +R ++ ++ S+YA ++ I G + +++ G + + ++G
Sbjct: 419 ILSVDPERERISLGIKQLEDDP--FSNYASLHEKGSIVRGTVKEVDAKGAVISLGDDIEG 476
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 669
SE+ D + ++ G+ V+ +I+S SR I+LS K +D + +L
Sbjct: 477 ILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKEL 534
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 142/368 (38%), Gaps = 61/368 (16%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
LE++QEG + VK++ D+G + G G L ++A N G IDV
Sbjct: 186 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 243
Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
K V DR R V L DP ++I P G V R
Sbjct: 244 K--------VLKFDRERNRVSLGLKQLGEDP------------WVAIKARYPEGTRVMAR 283
Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
V ++ + G G V + + T + +V ++L +D R +
Sbjct: 284 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRIS 343
Query: 389 LTL-----NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS 443
L + NP+ S GD + D G+ + LD + + ++ +
Sbjct: 344 LGIKQCKSNPW----EDFSSQFNKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWN 399
Query: 444 DVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKPGM 500
+V EE VR ++K+G + IL E ++ GI L+ F H + G
Sbjct: 400 EVGEEAVR----RFKKGDELETVILSVDPERERISLGIKQLEDDPFSNYASLH---EKGS 452
Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 558
+V+G V VD+ GA++ ++ + +S + K G E+ +++ + KS
Sbjct: 453 IVRGTVKEVDAKGAVISLGDDIEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKS 512
Query: 559 KRITVTHK 566
+ I+++ K
Sbjct: 513 RVISLSVK 520
>sp|P51345|RR1_PORPU 30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea
GN=rps1 PE=3 SV=1
Length = 263
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 756
G +P HL + ++ + IK +LL ++ +S+NL+LS + +LI A +
Sbjct: 138 GFVPNSHLNNFSKNTSSTNKFIKL-----KLLNVEEKSNNLILSHRRALIAQA------S 186
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
S++ +++ G + I G F++ G L G S+ Q + + +G ++++ I
Sbjct: 187 SNLIVGNIIEGVINQITPYGLFIK-AGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVI 245
Query: 817 LDVNSETGRITLSLKQ 832
+ V+ + GR++LS+K
Sbjct: 246 IHVDKKQGRLSLSMKH 261
Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 1055 AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 1114
A+ S+ VG++++ I +I P L +K G G +HI+E+N + VE + S FKIG
Sbjct: 183 AQASSNLIVGNIIEGVINQITPYGLFIKAG-NLKGLVHISEINVKQ---VERIPSQFKIG 238
Query: 1115 QTVTARII 1122
T+ A II
Sbjct: 239 DTIKAVII 246
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 160/373 (42%), Gaps = 41/373 (10%)
Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
FT ++ PG V+ +V+A+D V G+K+ L ++EF+ + + KVG +
Sbjct: 14 FTLQEMNPGEVITAEVVAIDQ--NFVTVNAGLKSES-LIDVAEFKNAQGEIEVKVGDFVT 70
Query: 551 FRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
+ V++ ++ +K + L E D I G I K G V +
Sbjct: 71 VTIESVENGFGETKLSREKAKRAADWIALEEAMENGD--ILSGIINGKVKGGLTV-MISS 127
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVS 662
++ F P S + + P + S + G+ ++ +++ +++ SRR L + R +
Sbjct: 128 IRAFLPGSLVDVRPVKDTS--HFEGKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKA 185
Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 721
+ ++ GS++ G+V +T V + G G + LA ++H + V++ G
Sbjct: 186 LLENLQEGSVIKGIVKNITDYGAFVDL---GGIDGLLHITDLAWRRVKHPS---EVLEVG 239
Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIET 775
E + ++L D E + L K QL D + +P + G V N+ +
Sbjct: 240 QEVEAKVLKFDQEKQRVSLGMK--------QLGEDPWSGLTRRYPQGTRLFGKVSNLTDY 291
Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
G FV + G S+ +D ++ SK +G V IL+++ RI+L +KQ
Sbjct: 292 GAFVEIEQGIEGLVHVSE-MDWTNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQ- 349
Query: 834 CCSSTDASFMQEH 846
C ++ F H
Sbjct: 350 CQANPWEEFAANH 362
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 95/414 (22%), Positives = 161/414 (38%), Gaps = 54/414 (13%)
Query: 190 GQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 248
G+ + V++LD + + R+ L L K L LE +QEG V+ VK+I D+G
Sbjct: 150 GKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKAL-LENLQEGSVIKGIVKNITDYGA 208
Query: 249 ILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 304
+ G G L +LA ++ ++ G ++ V D+ ++ V L
Sbjct: 209 FVDLG--GIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGM------ 260
Query: 305 KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 364
K + +D G + +V ++ + G + G V + + T +
Sbjct: 261 KQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPS 320
Query: 365 NDYNQHKKVNARILFVDPTSRAVGLTL-----NPY----LLHNRAPPSHVKVGDIYDQSK 415
+V IL +D R + L + NP+ HN+ V I D
Sbjct: 321 KVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITD--- 377
Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-----EEEVRKLEKKYKEGSCVRVRILGF 470
G+ + +P V +SD++ EE VRK YK+G V +L
Sbjct: 378 -------FGVFVGLPG---GIDGLVHLSDLSWTESGEEAVRK----YKKGEEVEAVVLAI 423
Query: 471 R-HLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
E ++ GI L+ F + + G +VKG V +VD+ GA++ V+ P
Sbjct: 424 DVEKERISLGIKQLEGDPFGNFISVND---KGSLVKGSVKSVDAKGAVIALSDEVEGYLP 480
Query: 528 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA 581
+ + K K G E+ ++ V K ++ K VK+K A S A
Sbjct: 481 ASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKNRSI---KLSVKAKDAKESREA 531
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,412,850
Number of Sequences: 539616
Number of extensions: 17517844
Number of successful extensions: 56645
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 55061
Number of HSP's gapped (non-prelim): 1378
length of query: 1152
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1023
effective length of database: 121,958,995
effective search space: 124764051885
effective search space used: 124764051885
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)