Query 001115
Match_columns 1152
No_of_seqs 464 out of 3607
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:48:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 99.9 3.4E-26 1.2E-30 252.6 28.2 223 584-847 5-233 (285)
2 3go5_A Multidomain protein wit 99.9 5.2E-25 1.8E-29 243.1 27.2 213 668-944 5-220 (285)
3 1kl9_A Eukaryotic translation 99.5 1.6E-16 5.6E-21 163.5 -5.0 120 759-909 13-135 (182)
4 2a19_A EIF-2- alpha, eukaryoti 99.4 3.3E-14 1.1E-18 145.6 2.3 103 761-890 15-120 (175)
5 2khj_A 30S ribosomal protein S 99.4 3.8E-13 1.3E-17 127.7 8.1 94 738-834 11-104 (109)
6 1kl9_A Eukaryotic translation 99.4 6.5E-15 2.2E-19 151.5 -4.8 121 496-621 13-138 (182)
7 2khi_A 30S ribosomal protein S 99.4 2.2E-12 7.7E-17 123.5 11.6 95 738-835 10-105 (115)
8 1wi5_A RRP5 protein homolog; S 99.3 1.9E-12 6.6E-17 124.9 9.0 110 214-323 3-117 (119)
9 1luz_A Protein K3, protein K2; 99.3 2.5E-12 8.5E-17 116.6 8.3 78 755-834 5-85 (88)
10 1q8k_A Eukaryotic translation 99.3 4.2E-13 1.4E-17 148.9 1.0 107 759-892 11-120 (308)
11 2k4k_A GSP13, general stress p 99.3 1.2E-11 4.2E-16 120.8 10.8 78 757-834 3-80 (130)
12 2khj_A 30S ribosomal protein S 99.3 6E-12 2.1E-16 119.4 7.9 92 563-657 12-103 (109)
13 2k52_A Uncharacterized protein 99.3 2.2E-11 7.5E-16 108.7 11.0 73 758-834 2-74 (80)
14 2k52_A Uncharacterized protein 99.2 7.6E-11 2.6E-15 105.2 11.1 71 583-657 3-73 (80)
15 2k4k_A GSP13, general stress p 99.2 4.8E-11 1.6E-15 116.6 10.3 76 582-657 4-79 (130)
16 2khi_A 30S ribosomal protein S 99.2 4.7E-11 1.6E-15 114.3 9.7 92 480-571 12-106 (115)
17 1luz_A Protein K3, protein K2; 99.2 1.3E-11 4.4E-16 111.9 4.9 76 580-657 6-84 (88)
18 2eqs_A ATP-dependent RNA helic 99.2 6.3E-11 2.2E-15 111.0 9.8 79 755-835 6-88 (103)
19 3aev_A Translation initiation 99.2 5E-12 1.7E-16 138.6 2.6 104 760-890 10-116 (275)
20 2a19_A EIF-2- alpha, eukaryoti 99.2 7.7E-11 2.6E-15 120.7 10.3 102 585-686 15-121 (175)
21 2cqo_A Nucleolar protein of 40 99.1 4.7E-11 1.6E-15 114.7 7.2 79 757-835 18-99 (119)
22 1q8k_A Eukaryotic translation 99.1 1.6E-11 5.6E-16 136.2 1.3 112 490-604 5-121 (308)
23 1wi5_A RRP5 protein homolog; S 99.1 1.3E-10 4.5E-15 112.0 7.3 93 739-835 3-97 (119)
24 2eqs_A ATP-dependent RNA helic 99.0 7.5E-10 2.6E-14 103.7 9.2 80 492-571 6-89 (103)
25 2cqo_A Nucleolar protein of 40 99.0 2.3E-10 8E-15 109.8 5.8 76 582-657 19-97 (119)
26 3aev_A Translation initiation 98.9 4E-09 1.4E-13 115.6 10.5 104 584-687 10-118 (275)
27 3cw2_C Translation initiation 98.9 1.4E-09 4.7E-14 119.1 5.8 78 757-834 7-86 (266)
28 3psi_A Transcription elongatio 98.8 5.4E-09 1.8E-13 134.5 9.9 81 755-835 896-977 (1219)
29 3bzc_A TEX; helix-turn-helix, 98.7 4.9E-09 1.7E-13 129.8 4.8 80 755-834 648-727 (785)
30 1go3_E DNA-directed RNA polyme 98.7 4.7E-08 1.6E-12 101.9 10.5 76 758-834 78-169 (187)
31 3cw2_C Translation initiation 98.7 5.5E-09 1.9E-13 114.3 2.8 95 583-677 9-107 (266)
32 3psi_A Transcription elongatio 98.7 3.3E-08 1.1E-12 127.2 9.8 79 579-657 896-975 (1219)
33 3psf_A Transcription elongatio 98.7 3E-09 1E-13 134.9 0.1 81 755-835 899-980 (1030)
34 4aid_A Polyribonucleotide nucl 98.6 4.1E-09 1.4E-13 129.0 -0.6 79 756-835 632-710 (726)
35 1go3_E DNA-directed RNA polyme 98.6 1.1E-07 3.7E-12 99.2 9.5 74 584-658 80-169 (187)
36 1e3p_A Guanosine pentaphosphat 98.6 1.6E-09 5.6E-14 133.7 -5.3 131 498-662 609-748 (757)
37 4ayb_E DNA-directed RNA polyme 98.5 2.1E-07 7.3E-12 96.3 10.2 75 758-833 78-167 (180)
38 3bzc_A TEX; helix-turn-helix, 98.5 2.5E-08 8.4E-13 123.6 3.5 80 579-658 648-727 (785)
39 3cdi_A Polynucleotide phosphor 98.5 1.1E-08 3.8E-13 126.0 0.0 78 756-834 622-699 (723)
40 1e3p_A Guanosine pentaphosphat 98.5 4.9E-09 1.7E-13 129.5 -3.3 78 757-835 663-744 (757)
41 2nn6_I 3'-5' exoribonuclease C 98.5 1.5E-07 5.1E-12 99.2 8.3 77 758-834 78-164 (209)
42 4aid_A Polyribonucleotide nucl 98.5 1.4E-08 4.8E-13 124.3 0.0 76 581-657 633-708 (726)
43 3psf_A Transcription elongatio 98.5 1.5E-08 5E-13 128.6 -0.1 78 580-657 900-978 (1030)
44 1hh2_P NUSA, N utilization sub 98.5 2.2E-07 7.4E-12 104.2 8.9 107 454-568 84-201 (344)
45 4ayb_E DNA-directed RNA polyme 98.5 3.9E-07 1.3E-11 94.3 9.7 74 584-658 80-168 (180)
46 3cdi_A Polynucleotide phosphor 98.5 2.1E-08 7.3E-13 123.4 0.0 120 415-571 581-701 (723)
47 1y14_B B16, RPB7, DNA-directed 98.4 4.5E-07 1.5E-11 92.9 9.7 65 759-824 81-155 (171)
48 2nn6_I 3'-5' exoribonuclease C 98.4 3.8E-07 1.3E-11 96.1 8.5 75 583-657 79-163 (209)
49 2b8k_G B16, DNA-directed RNA p 98.4 4.6E-07 1.6E-11 95.6 8.7 73 759-833 81-166 (215)
50 2c35_B Human RPB7, DNA-directe 98.4 5.9E-07 2E-11 92.2 9.3 73 759-833 79-166 (172)
51 3m7n_A Putative uncharacterize 98.4 5.2E-07 1.8E-11 93.0 8.2 70 759-834 56-135 (179)
52 1hh2_P NUSA, N utilization sub 98.4 3.4E-07 1.2E-11 102.6 7.0 108 541-655 85-199 (344)
53 1y14_B B16, RPB7, DNA-directed 98.3 1.2E-06 4.2E-11 89.7 8.9 64 584-648 82-155 (171)
54 2b8k_G B16, DNA-directed RNA p 98.3 1.4E-06 4.8E-11 91.9 9.5 71 584-656 82-165 (215)
55 3m7n_A Putative uncharacterize 98.3 9.4E-07 3.2E-11 91.0 7.8 68 584-657 57-134 (179)
56 2c35_B Human RPB7, DNA-directe 98.3 1.5E-06 5E-11 89.3 8.6 71 584-656 80-165 (172)
57 2je6_I RRP4, exosome complex R 98.2 2.2E-06 7.4E-11 92.9 7.4 74 759-833 72-148 (251)
58 3h0g_G DNA-directed RNA polyme 98.1 1.1E-06 3.8E-11 90.0 4.4 72 759-832 82-166 (172)
59 2z0s_A Probable exosome comple 98.1 2.8E-06 9.5E-11 91.4 7.7 73 583-656 64-140 (235)
60 2je6_I RRP4, exosome complex R 98.1 3.7E-06 1.2E-10 91.1 8.2 72 584-656 73-147 (251)
61 2ba0_A Archeal exosome RNA bin 98.1 7.3E-06 2.5E-10 87.6 9.7 74 759-833 55-129 (229)
62 2z0s_A Probable exosome comple 98.1 3.4E-06 1.2E-10 90.7 6.9 75 758-833 63-141 (235)
63 3h0g_G DNA-directed RNA polyme 98.1 2E-06 6.7E-11 88.1 4.5 65 584-649 83-157 (172)
64 2bh8_A 1B11; transcription, mo 98.0 7.7E-06 2.6E-10 75.9 7.1 85 668-799 12-99 (101)
65 2ba0_A Archeal exosome RNA bin 98.0 1.2E-05 4E-10 86.1 9.1 72 584-656 56-128 (229)
66 2bh8_A 1B11; transcription, mo 97.8 3E-05 1E-09 71.9 7.5 85 496-623 11-99 (101)
67 2id0_A Exoribonuclease 2; RNAs 97.6 0.00015 5.2E-09 89.3 10.0 73 758-830 555-642 (644)
68 2id0_A Exoribonuclease 2; RNAs 97.5 0.00022 7.6E-09 87.8 9.8 72 583-654 556-642 (644)
69 3ayh_B DNA-directed RNA polyme 97.5 0.00021 7.1E-09 75.1 8.1 62 760-822 80-160 (203)
70 1k0r_A NUSA; two component arr 97.4 0.00027 9.1E-09 79.4 9.1 82 756-848 123-213 (366)
71 3ayh_B DNA-directed RNA polyme 97.4 0.00027 9.1E-09 74.2 7.7 63 584-647 80-161 (203)
72 2ckz_B C25, DNA-directed RNA p 97.3 0.00033 1.1E-08 74.0 7.7 65 760-824 80-158 (218)
73 2asb_A Transcription elongatio 97.3 0.0004 1.4E-08 73.8 8.0 66 497-568 6-82 (251)
74 1k0r_A NUSA; two component arr 97.3 0.00041 1.4E-08 77.9 8.1 70 491-566 121-203 (366)
75 2ckz_B C25, DNA-directed RNA p 97.3 0.00037 1.3E-08 73.6 7.3 65 584-648 80-158 (218)
76 2bx2_L Ribonuclease E, RNAse E 97.2 0.00058 2E-08 80.6 9.1 74 758-831 42-126 (517)
77 2bx2_L Ribonuclease E, RNAse E 97.0 0.00075 2.6E-08 79.7 7.3 73 583-655 43-126 (517)
78 2asb_A Transcription elongatio 97.0 0.0015 5.2E-08 69.4 8.6 76 760-848 6-90 (251)
79 2vnu_D Exosome complex exonucl 96.9 0.00091 3.1E-08 83.9 6.9 69 763-831 671-760 (760)
80 2wp8_J Exosome complex exonucl 96.8 0.001 3.5E-08 85.0 6.9 70 762-831 887-977 (977)
81 2vnu_D Exosome complex exonucl 96.7 0.0014 4.7E-08 82.2 6.4 69 587-655 671-760 (760)
82 2nn6_H Exosome complex exonucl 96.6 0.0018 6.2E-08 71.7 6.2 74 759-833 93-176 (308)
83 2wp8_J Exosome complex exonucl 96.5 0.0017 5.9E-08 83.0 5.8 70 586-655 887-977 (977)
84 2ja9_A Exosome complex exonucl 96.5 0.0068 2.3E-07 61.6 8.6 69 496-565 5-75 (175)
85 2nn6_H Exosome complex exonucl 96.4 0.0028 9.6E-08 70.2 5.7 73 495-567 92-175 (308)
86 2ja9_A Exosome complex exonucl 96.4 0.0091 3.1E-07 60.7 8.9 70 760-831 6-76 (175)
87 2nn6_G Exosome complex exonucl 94.6 0.076 2.6E-06 58.2 8.6 70 584-655 126-195 (289)
88 2nn6_G Exosome complex exonucl 93.7 0.1 3.5E-06 57.2 7.5 69 496-565 125-194 (289)
89 2rf4_A DNA-directed RNA polyme 86.5 1.8 6.2E-05 45.3 8.7 61 496-556 127-199 (214)
90 2rf4_A DNA-directed RNA polyme 85.8 1.9 6.5E-05 45.2 8.4 65 584-648 128-204 (214)
91 3d0f_A Penicillin-binding 1 tr 78.3 4.3 0.00015 37.3 6.9 55 498-552 33-93 (106)
92 3h8z_A FragIle X mental retard 77.0 3.3 0.00011 39.4 5.7 83 585-689 14-98 (128)
93 3h8z_A FragIle X mental retard 76.9 18 0.00063 34.3 10.8 97 498-619 14-115 (128)
94 3d0f_A Penicillin-binding 1 tr 73.1 7.6 0.00026 35.6 7.1 55 585-639 33-93 (106)
95 2r7d_A Ribonuclease II family 70.9 5.2 0.00018 47.0 6.7 59 584-654 402-460 (469)
96 2r7d_A Ribonuclease II family 67.3 8.2 0.00028 45.3 7.4 59 760-830 402-460 (469)
97 1h9m_A MODG, molybdenum-bindin 62.2 37 0.0013 32.2 10.0 117 135-285 10-135 (145)
98 1jjg_A M156R; beta barrel, S1 60.5 16 0.00055 32.0 5.9 63 582-646 29-94 (102)
99 2eqj_A Metal-response element- 60.2 43 0.0015 27.8 8.0 51 538-618 9-61 (66)
100 1jjg_A M156R; beta barrel, S1 58.3 47 0.0016 29.1 8.4 63 755-821 26-93 (102)
101 4b9x_A TDRD1, tudor domain-con 52.3 1.1E+02 0.0037 31.8 12.2 134 542-690 12-177 (226)
102 2yty_A Cold shock domain-conta 45.0 31 0.0011 30.5 5.4 53 584-641 14-67 (88)
103 4hcz_A PHD finger protein 1; p 42.4 44 0.0015 26.9 5.2 35 585-619 16-52 (58)
104 2k5n_A Putative cold-shock pro 40.0 77 0.0026 26.9 7.0 47 589-642 3-52 (74)
105 4b9w_A TDRD1, tudor domain-con 39.4 2.2E+02 0.0074 28.8 11.9 133 542-689 12-176 (201)
106 1wfq_A UNR protein; beta-barre 37.7 89 0.0031 27.5 7.3 51 586-642 16-68 (89)
107 1h95_A CSD, Y-box binding prot 37.5 1.4E+02 0.0047 25.6 8.3 56 587-642 7-65 (79)
108 2eqj_A Metal-response element- 36.9 51 0.0018 27.3 5.0 15 625-639 9-23 (66)
109 3kf6_B Protein TEN1; OB fold, 35.4 1.2E+02 0.0042 27.4 7.6 52 129-196 16-69 (105)
110 2vb2_X Copper protein, cation 35.3 1.3E+02 0.0045 26.3 8.0 47 635-681 17-76 (88)
111 2qcp_X Cation efflux system pr 35.3 1.4E+02 0.0048 25.7 8.0 47 635-681 9-68 (80)
112 4b9x_A TDRD1, tudor domain-con 33.0 4.2E+02 0.014 27.2 13.4 138 457-606 13-177 (226)
113 3i2z_B RNA chaperone, negative 29.9 1.6E+02 0.0055 24.6 7.3 51 588-642 5-58 (71)
114 3dlm_A Histone-lysine N-methyl 29.8 4.7E+02 0.016 26.8 13.7 93 498-618 21-121 (213)
115 1c9o_A CSPB, cold-shock protei 29.5 2.3E+02 0.0078 23.2 8.1 49 590-642 3-53 (66)
116 2qcp_X Cation efflux system pr 27.9 2.8E+02 0.0096 23.7 8.6 68 919-990 9-76 (80)
117 2k5n_A Putative cold-shock pro 27.5 1.4E+02 0.0047 25.3 6.5 49 234-286 1-52 (74)
118 2yty_A Cold shock domain-conta 27.1 1.2E+02 0.004 26.7 6.2 52 761-817 15-67 (88)
119 1fr3_A MOP, molybdate/tungstat 26.6 47 0.0016 26.8 3.4 49 234-285 7-59 (67)
120 1gut_A Mopii, molybdate bindin 26.1 46 0.0016 27.2 3.2 49 234-285 7-60 (68)
121 2ytx_A Cold shock domain-conta 25.2 90 0.0031 27.9 5.2 50 586-641 16-67 (97)
122 3aqq_A Calcium-regulated heat 25.1 1.7E+02 0.0059 28.3 7.4 54 584-643 58-114 (147)
123 1h95_A CSD, Y-box binding prot 24.0 2E+02 0.0069 24.5 7.0 60 500-559 7-69 (79)
124 3a0j_A Cold shock protein; OB- 23.8 1.9E+02 0.0066 24.2 6.7 50 589-642 2-53 (73)
125 2e5p_A Protein PHF1, PHD finge 21.9 1.9E+02 0.0065 23.9 5.8 35 585-619 22-58 (68)
126 2vb2_X Copper protein, cation 21.7 3.8E+02 0.013 23.3 8.5 49 462-510 17-76 (88)
127 3i4o_A Translation initiation 21.1 1.5E+02 0.0052 25.5 5.5 62 764-829 15-77 (79)
128 2ytx_A Cold shock domain-conta 20.1 1.4E+02 0.0046 26.8 5.3 50 762-817 16-67 (97)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.95 E-value=3.4e-26 Score=252.57 Aligned_cols=223 Identities=17% Similarity=0.118 Sum_probs=187.7
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeCCCCccc
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~~~~~~~ 663 (1152)
..|+++.|+|+++.++|+||++ ++.+||||.+++. . ++||+++|.|+ .|. ++|+.+|.+.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~-~g~egllp~se~~-------~---~vGdevev~v~-~d~-~~r~iat~~~------- 64 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQK-DGQTYALAKEEGQ-------H---TVGDTVKGFAY-TDM-KQKLRLTTLE------- 64 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEE-TTEEEEEEGGGCC-------C---CTTSEEEEEEE-ECT-TSCEEEECSC-------
T ss_pred cCCCEEEEEEEEEECCEEEEEc-CCeEEEEEHHHCc-------c---ccCCEEEEEEE-ECC-CCCEEEeccc-------
Confidence 3699999999999999999999 5999999999983 1 89999999998 576 4567777642
Q ss_pred cccccCCCEEEEEEEEEe-CCcEEEEEeeCC-ceEEEEeCCCcCCccccccccccccCCCCeEeEEEEeecccCceeeec
Q 001115 664 DDLVKLGSLVSGVVDVVT-PNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741 (1152)
Q Consensus 664 ~~~l~vG~iv~g~V~~v~-~~g~~V~l~~~~-~v~G~ip~~hlsd~~~~~~~~~~~lk~G~~v~~vl~~d~~~~~i~lS~ 741 (1152)
..+++|+++.|+|++++ ++|+||++ +. +.+||||.+++++.. ...+++||++...+.+|+ ++||.+|+
T Consensus 65 -p~~~~G~~~~g~V~~v~~~~GaFVdi--G~~~~d~lvp~sel~~~~------~~~~~~Gd~v~v~l~iD~-~~Ri~ls~ 134 (285)
T 3go5_A 65 -VTATQDQFGWGRVTEVRKDLGVFVDT--GLPDKEIVVSLDILPELK------ELWPKKGDQLYIRLEVDK-KDRIWGLL 134 (285)
T ss_dssp -CCSCSSSCEEEEEEEEETTTEEEEEC--SCTTCCEEEEGGGSCSSG------GGSCCTTCEEEEEEEECT-TSCEEEEE
T ss_pred -ccccCCCEEEEEEEEEccCceEEEEE--CCCCcEEEEEHHHCCccc------ccccCCCCEEEEEEEECC-CCcEEEEe
Confidence 24789999999999999 79999999 65 699999999988743 235799999996678998 67899999
Q ss_pred chh-hccccccCCCccccCCCCCEEEEEEEEEecceEEE-EECCCeEEEEeccCCCCccccCccccccCCCEEEEEEEEE
Q 001115 742 KYS-LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV-RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819 (1152)
Q Consensus 742 K~s-l~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~GvfV-~~~~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~v 819 (1152)
|+. ..++|... .+.+++|+.+.|+|.+++++|+|| .+.+++.||+|.|++++ .+++||.|+|+|++|
T Consensus 135 k~~~~~~~~~~~---~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~--------~l~~Gd~v~~~V~~i 203 (285)
T 3go5_A 135 AYQEDFQRLARP---AYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA--------EPRLGQVLDARVIGF 203 (285)
T ss_dssp CCHHHHHHHCCC---CCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS--------CCCTTCEEEEEEEEE
T ss_pred hhhhhcchhhhh---hhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc--------cCCCCCEEEEEEEEE
Confidence 976 56777643 467899999999999999999999 98899999999999973 689999999999999
Q ss_pred eCCCCeEEEEeecccc--CCCchhhhhhhh
Q 001115 820 NSETGRITLSLKQSCC--SSTDASFMQEHF 847 (1152)
Q Consensus 820 d~e~~ri~LSlk~~~~--~~~~~~~~~~~~ 847 (1152)
|++++||.||+|+... ...++..+.+|+
T Consensus 204 d~~d~kI~LSlk~~~~~~~~~~a~~il~~L 233 (285)
T 3go5_A 204 REVDRTLNLSLKPRSFEMLENDAQMILTYL 233 (285)
T ss_dssp ETTTTEEEEECSCCCCCCCCHHHHHHHHHH
T ss_pred ECCCCeEEEEeChhhhhccchHHHHHHHHH
Confidence 9999999999999743 223344444444
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.94 E-value=5.2e-25 Score=243.15 Aligned_cols=213 Identities=17% Similarity=0.110 Sum_probs=177.2
Q ss_pred cCCCEEEEEEEEEeCCcEEEEEeeCCceEEEEeCCCcCCccccccccccccCCCCeEeEEEEeecccCceeeecchhhcc
Q 001115 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 747 (1152)
Q Consensus 668 ~vG~iv~g~V~~v~~~g~~V~l~~~~~v~G~ip~~hlsd~~~~~~~~~~~lk~G~~v~~vl~~d~~~~~i~lS~K~sl~~ 747 (1152)
.+|++++|+|++++++|+||++ ++.+|+||..+++. ++||+++..+..|.+ +++++|.+ +
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~---~g~egllp~se~~~------------~vGdevev~v~~d~~-~r~iat~~----~ 64 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQK---DGQTYALAKEEGQH------------TVGDTVKGFAYTDMK-QKLRLTTL----E 64 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEE---TTEEEEEEGGGCCC------------CTTSEEEEEEEECTT-SCEEEECS----C
T ss_pred cCCCEEEEEEEEEECCEEEEEc---CCeEEEEEHHHCcc------------ccCCEEEEEEEECCC-CCEEEecc----c
Confidence 4799999999999999999999 58999998887731 899999944445654 45666654 2
Q ss_pred ccccCCCccccCCCCCEEEEEEEEEe-cceEEEEECC-CeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCe
Q 001115 748 SAQQLPSDASHIHPNSVVHGYVCNII-ETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825 (1152)
Q Consensus 748 ~~~~~~~~~~~~~~G~~v~G~V~~i~-~~GvfV~~~~-~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~r 825 (1152)
| .+++|+.+.|.|++++ ++|+||++.. +.+||+|.|+++|... ..+++||.|.++ +.+|+ ++|
T Consensus 65 p---------~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~----~~~~~Gd~v~v~-l~iD~-~~R 129 (285)
T 3go5_A 65 V---------TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKE----LWPKKGDQLYIR-LEVDK-KDR 129 (285)
T ss_dssp C---------CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGG----GSCCTTCEEEEE-EEECT-TSC
T ss_pred c---------cccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcccc----cccCCCCEEEEE-EEECC-CCc
Confidence 2 2678999999999999 8999999976 6999999999998543 357899999766 68998 789
Q ss_pred EEEEeeccccCCCchhhhhhhhhHHHHHHHhhcCcCCCcccccccCcccccEEEEEEEEEecceEEE-EecCCCCeEEEE
Q 001115 826 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV-SFEEHSDVYGFI 904 (1152)
Q Consensus 826 i~LSlk~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~~~g~~v-~l~~~~~v~G~i 904 (1152)
|.||+|+... +++| ......|.+|+.|+|+|.+++++|+|| .+++ ++.|+|
T Consensus 130 i~ls~k~~~~-----------~~~~---------------~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~--g~~Gli 181 (285)
T 3go5_A 130 IWGLLAYQED-----------FQRL---------------ARPAYNNMQNQNWPAIVYRLKLSGTFVYLPEN--NMLGFI 181 (285)
T ss_dssp EEEEECCHHH-----------HHHH---------------CCCCCSCCTTCEEEEEEEEEETTEEEEEETTT--TEEEEE
T ss_pred EEEEehhhhh-----------cchh---------------hhhhhhCCCCCEEEEEEEEEeCCcEEEEEeCC--CeEEEE
Confidence 9999986421 1333 112478999999999999999999999 8875 799999
Q ss_pred EeEeeCCCcccCCCEEEEEEEEEECCCCEEEEEEcccchh
Q 001115 905 THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944 (1152)
Q Consensus 905 ~~s~l~~~~~~~G~~v~a~Vl~vd~~~~~v~LSlk~s~~~ 944 (1152)
|.++++ ..+++||+|+|+|++++.++++++||+|+....
T Consensus 182 h~SEl~-~~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~ 220 (285)
T 3go5_A 182 HPSERY-AEPRLGQVLDARVIGFREVDRTLNLSLKPRSFE 220 (285)
T ss_dssp CGGGCS-SCCCTTCEEEEEEEEEETTTTEEEEECSCCCCC
T ss_pred EHHHcc-ccCCCCCEEEEEEEEEECCCCeEEEEeChhhhh
Confidence 999997 579999999999999999899999999996544
No 3
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.53 E-value=1.6e-16 Score=163.45 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=94.3
Q ss_pred CCCCCEEEEEEEEEecceEEEEE--CCCeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEeeccccC
Q 001115 759 IHPNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836 (1152)
Q Consensus 759 ~~~G~~v~G~V~~i~~~GvfV~~--~~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~~~~ 836 (1152)
.++|+++.|+|++|++||+||++ .++++||+|+|+++|.++.++++.|++||.|.|+|+++|.+++||.||+|+...
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~- 91 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSP- 91 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCH-
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCc-
Confidence 37899999999999999999999 689999999999999999999999999999999999999999999999998754
Q ss_pred CCchhhhhhhhhHHHHHHHhhcCcCCCcccccccCcccccEEEEEEEEEec-ceEEEEecCCCCeEEEEEeEee
Q 001115 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVVSFEEHSDVYGFITHHQL 909 (1152)
Q Consensus 837 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~~-~g~~v~l~~~~~v~G~i~~s~l 909 (1152)
++|+.. ...|+.|+.++|+|..+.+ +| +.++. ++.|++|.+++
T Consensus 92 -----------~p~~~~---------------~~~~~~g~~v~g~v~~i~~~~g--v~l~~--giegl~h~s~~ 135 (182)
T 1kl9_A 92 -----------EEAIKC---------------EDKFTKSKTVYSILRHVAEVLE--YTKDE--QLESLFQRTAW 135 (182)
T ss_dssp -----------HHHHHH---------------HHHHHHHHHHHHHHHHHHHHTT--CCSHH--HHHHHHHHTHH
T ss_pred -----------ChHHHH---------------HHhccCCCEEEEEEEEchhhcC--CcccC--ChhheEEeeec
Confidence 456332 3567899999999999998 99 46664 68899998765
No 4
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.41 E-value=3.3e-14 Score=145.63 Aligned_cols=103 Identities=20% Similarity=0.254 Sum_probs=83.9
Q ss_pred CCCEEEEEEEEEecceEEEEE--CCCeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEeeccccCCC
Q 001115 761 PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838 (1152)
Q Consensus 761 ~G~~v~G~V~~i~~~GvfV~~--~~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~~~~~~ 838 (1152)
+|+++.|+|++|++||+||++ ++++.||+|+|+++|.++.++.+.|++||.|.|+|+++|++++||.||+++...
T Consensus 15 ~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~--- 91 (175)
T 2a19_A 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSS--- 91 (175)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCH---
T ss_pred CCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCc---
Confidence 899999999999999999999 489999999999999999999999999999999999999999999999998753
Q ss_pred chhhhhhhhhHHHHHHHhhcCcCCCcccccccCcccccEEEEEEEEEe-cceE
Q 001115 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN-DFGV 890 (1152)
Q Consensus 839 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~-~~g~ 890 (1152)
++|+.. ...|+.|+.++|+|..+. ++|+
T Consensus 92 ---------~~~~~~---------------~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 92 ---------EDIIKC---------------EEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp ---------HHHHHH---------------HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------ChHHHH---------------HHhccCCCcceEEEEEchhhcCC
Confidence 456432 345778988899988888 6776
No 5
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.39 E-value=3.8e-13 Score=127.70 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=78.3
Q ss_pred eeecchhhccccccCCCccccCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccccCccccccCCCEEEEEEE
Q 001115 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817 (1152)
Q Consensus 738 ~lS~K~sl~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl 817 (1152)
.-|+|+...+||+.+. .++++|+++.|+|.+++++|+||++.+++.||+|.+++++.+..++.+.|++||.|.|+|+
T Consensus 11 ~~~iKq~~~~p~~~~~---~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~ 87 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWV---ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFT 87 (109)
T ss_dssp ----------CHHHHT---TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEE
T ss_pred ccchhhcccCHHHHHh---hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEE
Confidence 3578999999997643 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeeccc
Q 001115 818 DVNSETGRITLSLKQSC 834 (1152)
Q Consensus 818 ~vd~e~~ri~LSlk~~~ 834 (1152)
++|.+++++.||++...
T Consensus 88 ~vd~~~~ki~LS~k~~~ 104 (109)
T 2khj_A 88 GVDRKNRAISLSVRAKD 104 (109)
T ss_dssp EEETTTTEEEEETTSSS
T ss_pred EEECCCCEEEEEEeecC
Confidence 99999999999998764
No 6
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.39 E-value=6.5e-15 Score=151.52 Aligned_cols=121 Identities=14% Similarity=0.160 Sum_probs=94.5
Q ss_pred cCCCCEEEEEEEEEeCCeEEEEe--CCCeEEEEeCCccccccccCCCCccccCCEEEEEEEEE--eCCeEEEeechhhhh
Q 001115 496 VKPGMVVKGKVIAVDSFGAIVQF--PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571 (1152)
Q Consensus 496 l~~G~iv~g~V~~v~~~G~~V~i--~~~v~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v--~~~~i~LS~K~~l~~ 571 (1152)
.++|+++.|+|++++++|+||+| .++++|+||.++|++.+..+|.+.|++||.|+|+|+.+ ++++|.||+|+...+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcC
Confidence 47999999999999999999999 57899999999999988899999999999999999999 578999999987665
Q ss_pred hhhhHhhhhhhccCCceEEEEEEEEec-CeEEEEEcCCeEEEEeccccCCC
Q 001115 572 SKLAILSSYAEATDRLITHGWITKIEK-HGCFVRFYNGVQGFAPRSELGLD 621 (1152)
Q Consensus 572 ~~~~~~~~~~~~~~G~~~~G~V~~i~~-~G~~V~~~~gv~Gflp~sel~~~ 621 (1152)
++... .+.+..|+.+.|+|+++.+ +| |++.+|+.||+|.++++|.
T Consensus 93 p~~~~---~~~~~~g~~v~g~v~~i~~~~g--v~l~~giegl~h~s~~~~~ 138 (182)
T 1kl9_A 93 EAIKC---EDKFTKSKTVYSILRHVAEVLE--YTKDEQLESLFQRTAWVFD 138 (182)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHTT--CCSHHHHHHHHHHTHHHHH
T ss_pred hHHHH---HHhccCCCEEEEEEEEchhhcC--CcccCChhheEEeeecchh
Confidence 43222 2345679999999999998 99 7888899999999988653
No 7
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.37 E-value=2.2e-12 Score=123.49 Aligned_cols=95 Identities=25% Similarity=0.298 Sum_probs=76.7
Q ss_pred eeecchhhccccccCCCccccCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCC-ccccCccccccCCCEEEEEE
Q 001115 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-GQRADLSKTYYVGQSVRSNI 816 (1152)
Q Consensus 738 ~lS~K~sl~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~-~~~~~~~~~f~~Gq~V~v~V 816 (1152)
.-|+|+...++|..+. .++++|+++.|.|++++++|+||++.+++.||+|.+++++ .+..++...|++||.|.|+|
T Consensus 10 ~~~~k~~~~~p~~~~~---~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV 86 (115)
T 2khi_A 10 HSSGLVPRGSHWVAIA---KRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMV 86 (115)
T ss_dssp -----------CCCSS---CSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEE
T ss_pred ccchhhcccCCHHHHh---hcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEE
Confidence 3578888889987643 6789999999999999999999999999999999999998 46778889999999999999
Q ss_pred EEEeCCCCeEEEEeecccc
Q 001115 817 LDVNSETGRITLSLKQSCC 835 (1152)
Q Consensus 817 l~vd~e~~ri~LSlk~~~~ 835 (1152)
+++|.+++||.||+++...
T Consensus 87 ~~vd~~~~rI~lslk~~~~ 105 (115)
T 2khi_A 87 LDIDEERRRISLGLKQCKA 105 (115)
T ss_dssp EEEETTTTEEEECCCCCCS
T ss_pred EEEECCCCEEEEEEEecCc
Confidence 9999999999999998643
No 8
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.33 E-value=1.9e-12 Score=124.86 Aligned_cols=110 Identities=29% Similarity=0.411 Sum_probs=98.7
Q ss_pred EecchHHHhcCCCccccCCCCEEEEEEEEEecCeEEEEeCCCceeeeecCCCCCC-----CCCCcCCCCcEEEEEEEEEe
Q 001115 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSID 288 (1152)
Q Consensus 214 LS~~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ivd~Gi~~~~gFl~~~~~~~-----~~~~~l~~G~~~~~~V~~~~ 288 (1152)
+|++|+.+|+.++.+++..|+++.|+|++|+++|++|++|..+..||++.++... ..+..+++||.+.|+|.+++
T Consensus 3 ~sl~P~~vn~~~~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 82 (119)
T 1wi5_A 3 SGSSGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVK 82 (119)
T ss_dssp CCCCCSCSSCCCCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECC
T ss_pred cccCHHHhhccccHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEe
Confidence 6899999999999999999999999999999999999999667889998876410 12237999999999999999
Q ss_pred CCCCEEEEccCccccccccccccccccccccCCCc
Q 001115 289 RTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323 (1152)
Q Consensus 289 ~~~~~v~ls~~~~~~~~~~~~~~~~~~~~~l~pG~ 323 (1152)
..++.+.||+.+..+.++.+++.+.+++++|.||.
T Consensus 83 ~~~~~i~Lslk~~~l~~~~~~~~~~~~~~~l~p~~ 117 (119)
T 1wi5_A 83 GNGGVVSLSVGHSEVSTAIATEQQSWNLNNLSGPS 117 (119)
T ss_dssp TTSCEEEEECCCCCSCCCCCCSSCCCCCCCCCCCC
T ss_pred CCCCEEEEEEchhhcccceeeccCccChhhccCCC
Confidence 98899999999999999999988899999999995
No 9
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.32 E-value=2.5e-12 Score=116.59 Aligned_cols=78 Identities=18% Similarity=0.318 Sum_probs=71.8
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEEC--CCeEEEEecc-CCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEee
Q 001115 755 DASHIHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRS-KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1152)
Q Consensus 755 ~~~~~~~G~~v~G~V~~i~~~GvfV~~~--~~l~Glv~~s-~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk 831 (1152)
.|...++|+++.|+|+ +++||+||++. ++++||+|+| ++++.+..++++.| +||.|.|+|+++|.+++|+.||+|
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk 82 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYK 82 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEe
Confidence 3556789999999999 99999999996 4899999999 99998888888889 999999999999999999999999
Q ss_pred ccc
Q 001115 832 QSC 834 (1152)
Q Consensus 832 ~~~ 834 (1152)
+..
T Consensus 83 ~~~ 85 (88)
T 1luz_A 83 RMC 85 (88)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 10
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.28 E-value=4.2e-13 Score=148.86 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=95.6
Q ss_pred CCCCCEEEEEEEEEecceEEEEEC--CCeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEeeccccC
Q 001115 759 IHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836 (1152)
Q Consensus 759 ~~~G~~v~G~V~~i~~~GvfV~~~--~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~~~~ 836 (1152)
.++|+++.|+|++|++||+||++. +++.||+|.|+++|.++.++.+.|++||.|.|+|+++|++++||.||+|+...
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~- 89 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSP- 89 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCH-
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEeccc-
Confidence 458999999999999999999997 79999999999999999999999999999999999999999999999998743
Q ss_pred CCchhhhhhhhhHHHHHHHhhcCcCCCcccccccCcccccEEEEEEEEEec-ceEEE
Q 001115 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVV 892 (1152)
Q Consensus 837 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~~-~g~~v 892 (1152)
++|+.. ...|++|++++|+|..+.+ +|+|+
T Consensus 90 -----------~p~~~~---------------~~~~~~G~~v~G~V~~v~~~~G~fi 120 (308)
T 1q8k_A 90 -----------EEAIKC---------------EDKFTKSKTVYSILRHVAEVLEYTK 120 (308)
T ss_dssp -----------HHHHHH---------------HHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred -----------ChHHHH---------------HHHccCCCeeEEEEEEcccccCCcc
Confidence 455332 4567899999999999998 59965
No 11
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.27 E-value=1.2e-11 Score=120.81 Aligned_cols=78 Identities=27% Similarity=0.435 Sum_probs=74.2
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEeeccc
Q 001115 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1152)
Q Consensus 757 ~~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~~ 834 (1152)
+++++|+++.|+|++|+++|+||++.++++||+|++++++.++.++.+.|++||.|.|+|+++|.++++|.||++...
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~ 80 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQ 80 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecc
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999999764
No 12
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.26 E-value=6e-12 Score=119.38 Aligned_cols=92 Identities=22% Similarity=0.205 Sum_probs=74.1
Q ss_pred EeechhhhhhhhhHhhhhhhccCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEE
Q 001115 563 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1152)
Q Consensus 563 LS~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~ 642 (1152)
-|+|+...+++.. ..+++++|+++.|+|+++.++|+||++.+++.||+|.+++++.+..++.+.|++||.|+|+|++
T Consensus 12 ~~iKq~~~~p~~~---~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~ 88 (109)
T 2khj_A 12 SGLVPRGSHMFNN---WVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTG 88 (109)
T ss_dssp ---------CHHH---HTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEE
T ss_pred cchhhcccCHHHH---HhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEE
Confidence 4677766654332 2346689999999999999999999998899999999999988888888999999999999999
Q ss_pred EecCCCEEEEEEeeC
Q 001115 643 SIPASRRINLSFMMK 657 (1152)
Q Consensus 643 vd~~~~ri~lS~k~~ 657 (1152)
+|++++++.||++..
T Consensus 89 vd~~~~ki~LS~k~~ 103 (109)
T 2khj_A 89 VDRKNRAISLSVRAK 103 (109)
T ss_dssp EETTTTEEEEETTSS
T ss_pred EECCCCEEEEEEeec
Confidence 999999999999864
No 13
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.26 E-value=2.2e-11 Score=108.69 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=67.6
Q ss_pred cCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEeeccc
Q 001115 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1152)
Q Consensus 758 ~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~~ 834 (1152)
++++|+++.|.|.+++++|+||++.+++.||+|.+++++.+. +.|++||.|.|+|+++|++++|+.||+++..
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~ 74 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLE 74 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 467899999999999999999999989999999999998654 5799999999999999999999999998764
No 14
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.20 E-value=7.6e-11 Score=105.19 Aligned_cols=71 Identities=20% Similarity=0.323 Sum_probs=65.5
Q ss_pred ccCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeC
Q 001115 583 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657 (1152)
Q Consensus 583 ~~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~ 657 (1152)
.++|+++.|+|+++.++|+||++.+++.||+|.|++++.+. +.|++||.|+|+|+++|++++++.||+++.
T Consensus 3 ~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~ 73 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPL 73 (80)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSC
T ss_pred CCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 46899999999999999999999999999999999987644 579999999999999999999999999864
No 15
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.19 E-value=4.8e-11 Score=116.62 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=71.7
Q ss_pred hccCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeC
Q 001115 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657 (1152)
Q Consensus 582 ~~~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~ 657 (1152)
++.+|+++.|+|+++.++|+||++.+++.||||+|++++.++.++.+.|++||.|+|+|+++|+++++|.||++..
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~ 79 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRAT 79 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHH
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeec
Confidence 4578999999999999999999999999999999999988888899999999999999999999999999999864
No 16
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.19 E-value=4.7e-11 Score=114.25 Aligned_cols=92 Identities=21% Similarity=0.293 Sum_probs=74.6
Q ss_pred EccccccccccccccccCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEeCCccccc-cccCCCCccccCCEEEEEEEEE--
Q 001115 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF-EIVKPGKKFKVGAELVFRVLGV-- 556 (1152)
Q Consensus 480 S~k~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~~~v~g~vp~~hls~~-~~~~~~~~~kvG~~V~~rVl~v-- 556 (1152)
|+|+...++|.....++++|+++.|+|++++++|+||+++++++|+||.+++++. +..++.+.|++||.|+|+|+.+
T Consensus 12 ~~k~~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~ 91 (115)
T 2khi_A 12 SGLVPRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDE 91 (115)
T ss_dssp ---------CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEET
T ss_pred chhhcccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEEC
Confidence 5666667777666678999999999999999999999999999999999999873 5677888999999999999999
Q ss_pred eCCeEEEeechhhhh
Q 001115 557 KSKRITVTHKKTLVK 571 (1152)
Q Consensus 557 ~~~~i~LS~K~~l~~ 571 (1152)
++++|.||+|+...+
T Consensus 92 ~~~rI~lslk~~~~~ 106 (115)
T 2khi_A 92 ERRRISLGLKQCKAN 106 (115)
T ss_dssp TTTEEEECCCCCCSS
T ss_pred CCCEEEEEEEecCcC
Confidence 478999999987654
No 17
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.17 E-value=1.3e-11 Score=111.89 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=68.0
Q ss_pred hhhccCCceEEEEEEEEecCeEEEEEc--CCeEEEEecc-ccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEee
Q 001115 580 YAEATDRLITHGWITKIEKHGCFVRFY--NGVQGFAPRS-ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1152)
Q Consensus 580 ~~~~~~G~~~~G~V~~i~~~G~~V~~~--~gv~Gflp~s-el~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~ 656 (1152)
|...++|+++.|+|+ +.++|+||++. ++++||+|+| ++++.+..++++.| +||.|+|+|+++|++++++.||+|.
T Consensus 6 y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~ 83 (88)
T 1luz_A 6 YSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKR 83 (88)
T ss_dssp SCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred ecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEee
Confidence 444578999999999 99999999996 4899999999 99887766777788 9999999999999999999999986
Q ss_pred C
Q 001115 657 K 657 (1152)
Q Consensus 657 ~ 657 (1152)
.
T Consensus 84 ~ 84 (88)
T 1luz_A 84 M 84 (88)
T ss_dssp E
T ss_pred c
Confidence 4
No 18
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=6.3e-11 Score=110.98 Aligned_cols=79 Identities=25% Similarity=0.441 Sum_probs=71.4
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEECC---CeEEEEeccCC-CCccccCccccccCCCEEEEEEEEEeCCCCeEEEEe
Q 001115 755 DASHIHPNSVVHGYVCNIIETGCFVRFLG---RLTGFAPRSKA-VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1152)
Q Consensus 755 ~~~~~~~G~~v~G~V~~i~~~GvfV~~~~---~l~Glv~~s~l-s~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSl 830 (1152)
+..++++|+++.|+|++|++||+||++.+ ++.||+|.+++ ++.++.++.+.|++||.|.|+|+++|. +|+.||+
T Consensus 6 ~~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSl 83 (103)
T 2eqs_A 6 SGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSM 83 (103)
T ss_dssp CCSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEES
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEE
Confidence 35678899999999999999999999986 89999999999 677788888899999999999999997 6999999
Q ss_pred ecccc
Q 001115 831 KQSCC 835 (1152)
Q Consensus 831 k~~~~ 835 (1152)
|+...
T Consensus 84 k~~~~ 88 (103)
T 2eqs_A 84 KDVDQ 88 (103)
T ss_dssp TTBCT
T ss_pred eeccc
Confidence 98743
No 19
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.17 E-value=5e-12 Score=138.58 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=91.4
Q ss_pred CCCCEEEEEEEEEecceEEEEEC--CCeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEeeccccCC
Q 001115 760 HPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837 (1152)
Q Consensus 760 ~~G~~v~G~V~~i~~~GvfV~~~--~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~~~~~ 837 (1152)
++|+++.|+|+++++||+||++. +++.||+|.|++++.++.++.+.|++||.|.|+|+++|++++++.||+++...
T Consensus 10 ~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~-- 87 (275)
T 3aev_A 10 EEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQ-- 87 (275)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCH--
T ss_pred CCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCc--
Confidence 48999999999999999999997 69999999999999999999999999999999999999999999999998643
Q ss_pred CchhhhhhhhhHHHHHHHhhcCcCCCcccccccCcccccEEEEEEEEEe-cceE
Q 001115 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN-DFGV 890 (1152)
Q Consensus 838 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~-~~g~ 890 (1152)
.+|+.. ...|+.|+.+.|.|..+. ++|+
T Consensus 88 ----------~~~~~~---------------~~~~~~g~~v~g~v~~v~~~~G~ 116 (275)
T 3aev_A 88 ----------QQRKAK---------------LQEFKRAQKAENLLRLAAEKLGK 116 (275)
T ss_dssp ----------HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------chhHHH---------------HHhccCCCeEEEEEEEchhhcCC
Confidence 344221 345778888889888888 7887
No 20
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.16 E-value=7.7e-11 Score=120.70 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=82.3
Q ss_pred CCceEEEEEEEEecCeEEEEE--cCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeCC-CCc
Q 001115 585 DRLITHGWITKIEKHGCFVRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRV 661 (1152)
Q Consensus 585 ~G~~~~G~V~~i~~~G~~V~~--~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~~-~~~ 661 (1152)
+|+++.|+|+++.++|+||++ ++++.||+|+|+|++.++.++++.|++||.|+|+|+++|++++++.||+++.. .+|
T Consensus 15 ~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~~~ 94 (175)
T 2a19_A 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSEDI 94 (175)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHHHH
T ss_pred CCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcChH
Confidence 799999999999999999999 58999999999999998999999999999999999999999999999998754 233
Q ss_pred c-ccccccCCCEEEEEEEEEe-CCcEE
Q 001115 662 S-EDDLVKLGSLVSGVVDVVT-PNAVV 686 (1152)
Q Consensus 662 ~-~~~~l~vG~iv~g~V~~v~-~~g~~ 686 (1152)
. ..+.++.|+.+.|+|..++ ++|+.
T Consensus 95 ~~~~~~~~~g~~v~g~V~~i~~~~G~~ 121 (175)
T 2a19_A 95 IKCEEKYQKSKTVHSILRYCAEKFQIP 121 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhccCCCcceEEEEEchhhcCCC
Confidence 3 2456788999999988887 66663
No 21
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=4.7e-11 Score=114.69 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=71.8
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEECC-CeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCC--CeEEEEeecc
Q 001115 757 SHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSLKQS 833 (1152)
Q Consensus 757 ~~~~~G~~v~G~V~~i~~~GvfV~~~~-~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~--~ri~LSlk~~ 833 (1152)
.++++|+++.|+|++|++||+||++.+ +++||+|+++++|.++.++.+.|++||.|.|+|+++|.++ +||.||+|+.
T Consensus 18 ~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~~ 97 (119)
T 2cqo_A 18 NLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVV 97 (119)
T ss_dssp CSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTTB
T ss_pred cccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEeec
Confidence 467899999999999999999999965 4799999999999999999999999999999999999864 6999999987
Q ss_pred cc
Q 001115 834 CC 835 (1152)
Q Consensus 834 ~~ 835 (1152)
..
T Consensus 98 ~~ 99 (119)
T 2cqo_A 98 NQ 99 (119)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 22
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.08 E-value=1.6e-11 Score=136.15 Aligned_cols=112 Identities=14% Similarity=0.191 Sum_probs=95.9
Q ss_pred cccccccCCCCEEEEEEEEEeCCeEEEEeC--CCeEEEEeCCccccccccCCCCccccCCEEEEEEEEE--eCCeEEEee
Q 001115 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 565 (1152)
Q Consensus 490 ~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~--~~v~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v--~~~~i~LS~ 565 (1152)
|+....+++|+++.|+|++++++|+||+|. ++++|+||.++++|.+..++.+.|++||.|+|+|+.+ ++++|.||+
T Consensus 5 f~~~~~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSl 84 (308)
T 1q8k_A 5 FYQHKFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSK 84 (308)
T ss_dssp SSSSCCCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEEC
T ss_pred ehhhcCCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEE
Confidence 444555679999999999999999999997 6999999999999988889999999999999999999 478999999
Q ss_pred chhhhhhhhhHhhhhhhccCCceEEEEEEEEec-CeEEEE
Q 001115 566 KKTLVKSKLAILSSYAEATDRLITHGWITKIEK-HGCFVR 604 (1152)
Q Consensus 566 K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~-~G~~V~ 604 (1152)
|+...+++.. ..+.+..|+++.|+|+++.+ +|+|++
T Consensus 85 K~~~~~p~~~---~~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 85 RRVSPEEAIK---CEDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp SSCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred EecccChHHH---HHHHccCCCeeEEEEEEcccccCCccC
Confidence 9876543322 23455789999999999998 699864
No 23
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.08 E-value=1.3e-10 Score=111.98 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=78.2
Q ss_pred eecchhhccccccCCCccccCCCCCEEEEEEEEEecceEEEEEC-CCeEEEEeccCCC-CccccCccccccCCCEEEEEE
Q 001115 739 LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAV-DGQRADLSKTYYVGQSVRSNI 816 (1152)
Q Consensus 739 lS~K~sl~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~GvfV~~~-~~l~Glv~~s~ls-~~~~~~~~~~f~~Gq~V~v~V 816 (1152)
+|++|+.++... .++++++|+++.|.|++|++||+||++. ++..||+|.+++. |....++.+.|++||.|.|+|
T Consensus 3 ~sl~P~~vn~~~----~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV 78 (119)
T 1wi5_A 3 SGSSGKNVNRVL----SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIV 78 (119)
T ss_dssp CCCCCSCSSCCC----CTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEE
T ss_pred cccCHHHhhccc----cHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEE
Confidence 678888877653 4678999999999999999999999997 6788888876642 333457788999999999999
Q ss_pred EEEeCCCCeEEEEeecccc
Q 001115 817 LDVNSETGRITLSLKQSCC 835 (1152)
Q Consensus 817 l~vd~e~~ri~LSlk~~~~ 835 (1152)
+++|.+++|+.||+++...
T Consensus 79 ~~vd~~~~~i~Lslk~~~l 97 (119)
T 1wi5_A 79 EKVKGNGGVVSLSVGHSEV 97 (119)
T ss_dssp EECCTTSCEEEEECCCCCS
T ss_pred EEEeCCCCEEEEEEchhhc
Confidence 9999999999999998754
No 24
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=7.5e-10 Score=103.66 Aligned_cols=80 Identities=19% Similarity=0.325 Sum_probs=71.2
Q ss_pred cccccCCCCEEEEEEEEEeCCeEEEEeCC---CeEEEEeCCcc-ccccccCCCCccccCCEEEEEEEEEeCCeEEEeech
Q 001115 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPG---GVKALCPLPHM-SEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKK 567 (1152)
Q Consensus 492 ~~~~l~~G~iv~g~V~~v~~~G~~V~i~~---~v~g~vp~~hl-s~~~~~~~~~~~kvG~~V~~rVl~v~~~~i~LS~K~ 567 (1152)
+...+++|+++.|+|+++.++|+||++.+ +++|+||.+++ ++.+..++.+.|++||.|+|+|+.++.++|.||+|+
T Consensus 6 ~~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~i~LSlk~ 85 (103)
T 2eqs_A 6 SGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGTKTSLSMKD 85 (103)
T ss_dssp CCSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEETTEEEEESTT
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEECCeeEEEEee
Confidence 45678999999999999999999999996 89999999999 666667788889999999999999966899999998
Q ss_pred hhhh
Q 001115 568 TLVK 571 (1152)
Q Consensus 568 ~l~~ 571 (1152)
...+
T Consensus 86 ~~~~ 89 (103)
T 2eqs_A 86 VDQE 89 (103)
T ss_dssp BCTT
T ss_pred cccC
Confidence 6554
No 25
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=2.3e-10 Score=109.82 Aligned_cols=76 Identities=18% Similarity=0.261 Sum_probs=68.2
Q ss_pred hccCCceEEEEEEEEecCeEEEEEcC-CeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCC--CEEEEEEeeC
Q 001115 582 EATDRLITHGWITKIEKHGCFVRFYN-GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS--RRINLSFMMK 657 (1152)
Q Consensus 582 ~~~~G~~~~G~V~~i~~~G~~V~~~~-gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~--~ri~lS~k~~ 657 (1152)
..++|+++.|+|+++.++|+||++.+ +..||||++++++.++.++.+.|++||.|+|+|+++|+++ +++.||++..
T Consensus 19 ~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~~ 97 (119)
T 2cqo_A 19 LPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVV 97 (119)
T ss_dssp SCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTTB
T ss_pred ccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEeec
Confidence 44689999999999999999999954 3699999999998888888889999999999999999874 6999999865
No 26
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.88 E-value=4e-09 Score=115.62 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=90.2
Q ss_pred cCCceEEEEEEEEecCeEEEEEc--CCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeCC-CC
Q 001115 584 TDRLITHGWITKIEKHGCFVRFY--NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TR 660 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~--~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~~-~~ 660 (1152)
++|+++.|+|+++.++|+||++. +|+.||+|.|++++.++.++.+.|++||.|.|+|+++|++++++.||++... .+
T Consensus 10 ~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~~~ 89 (275)
T 3aev_A 10 EEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQQ 89 (275)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHHH
T ss_pred CCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCcch
Confidence 37999999999999999999997 6999999999999988889999999999999999999999999999998753 23
Q ss_pred cc-ccccccCCCEEEEEEEEEe-CCcEEE
Q 001115 661 VS-EDDLVKLGSLVSGVVDVVT-PNAVVV 687 (1152)
Q Consensus 661 ~~-~~~~l~vG~iv~g~V~~v~-~~g~~V 687 (1152)
|. ..+.++.|+.+.|+|..+. ++|+.+
T Consensus 90 ~~~~~~~~~~g~~v~g~v~~v~~~~G~~~ 118 (275)
T 3aev_A 90 RKAKLQEFKRAQKAENLLRLAAEKLGKDF 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred hHHHHHhccCCCeEEEEEEEchhhcCCCH
Confidence 32 2346788999999888887 777744
No 27
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.86 E-value=1.4e-09 Score=119.08 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=73.4
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEEC--CCeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEeeccc
Q 001115 757 SHIHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1152)
Q Consensus 757 ~~~~~G~~v~G~V~~i~~~GvfV~~~--~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~~ 834 (1152)
..+++|+++.|+|++++++|+||++. +++.||+|.|+++|.++.++.+.|++||.|.|+|+++|.+++++.||++...
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~ 86 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVT 86 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTSC
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 34678999999999999999999997 8999999999999999999999999999999999999999999999999874
No 28
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.81 E-value=5.4e-09 Score=134.49 Aligned_cols=81 Identities=10% Similarity=0.124 Sum_probs=76.7
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCcc-ccCccccccCCCEEEEEEEEEeCCCCeEEEEeecc
Q 001115 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1152)
Q Consensus 755 ~~~~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~-~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~ 833 (1152)
+++++++|+++.|+|++|++||+||++..|++||+|+|+++|.+ +.+|.+.|++||.|.|+|++||.+++||.||||..
T Consensus 896 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 975 (1219)
T 3psi_A 896 SEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 975 (1219)
T ss_dssp CTTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHH
T ss_pred cHhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHH
Confidence 45889999999999999999999999999999999999999988 89999999999999999999999999999999987
Q ss_pred cc
Q 001115 834 CC 835 (1152)
Q Consensus 834 ~~ 835 (1152)
..
T Consensus 976 dl 977 (1219)
T 3psi_A 976 DV 977 (1219)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 29
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.72 E-value=4.9e-09 Score=129.78 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=75.9
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEeeccc
Q 001115 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1152)
Q Consensus 755 ~~~~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~~ 834 (1152)
+++++++|+++.|+|++|++||+||++..+++||+|+|+|+|.++.++.+.|++||.|.|+|+++|.+++||.|||+...
T Consensus 648 ~~~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 648 SLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp SSTTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred chhhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 46789999999999999999999999988999999999999999999999999999999999999999999999999654
No 30
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.68 E-value=4.7e-08 Score=101.92 Aligned_cols=76 Identities=25% Similarity=0.428 Sum_probs=66.7
Q ss_pred cCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCcccc-----------CccccccCCCEEEEEEEEEeCCCC--
Q 001115 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA-----------DLSKTYYVGQSVRSNILDVNSETG-- 824 (1152)
Q Consensus 758 ~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~~-----------~~~~~f~~Gq~V~v~Vl~vd~e~~-- 824 (1152)
...+|+++.|+|++++++|+||++.+ ++||+|+|++++.+.. ++.+.|++||.|+|+|+++|.+.+
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p 156 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERK 156 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC---
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 35689999999999999999999954 9999999999987664 677899999999999999998765
Q ss_pred ---eEEEEeeccc
Q 001115 825 ---RITLSLKQSC 834 (1152)
Q Consensus 825 ---ri~LSlk~~~ 834 (1152)
|+.||+++..
T Consensus 157 ~~~~I~lS~k~~~ 169 (187)
T 1go3_E 157 RGSKIALTMRQPY 169 (187)
T ss_dssp --CEEEEECCSTT
T ss_pred CccEEEEEEcCCC
Confidence 9999998753
No 31
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.67 E-value=5.5e-09 Score=114.30 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=78.1
Q ss_pred ccCCceEEEEEEEEecCeEEEEEc--CCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeCC-C
Q 001115 583 ATDRLITHGWITKIEKHGCFVRFY--NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-T 659 (1152)
Q Consensus 583 ~~~G~~~~G~V~~i~~~G~~V~~~--~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~~-~ 659 (1152)
.++|+++.|+|+++.++|+||++. +++.||+|.|++++.++.++.+.|++||.|.|+|+++|++++++.||++... .
T Consensus 9 ~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~~~ 88 (266)
T 3cw2_C 9 PSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTDD 88 (266)
T ss_dssp CCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTSCTT
T ss_pred CCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEecchh
Confidence 467999999999999999999997 7999999999999988888888999999999999999999999999998753 2
Q ss_pred Cccc-cccccCCCEEEEEE
Q 001115 660 RVSE-DDLVKLGSLVSGVV 677 (1152)
Q Consensus 660 ~~~~-~~~l~vG~iv~g~V 677 (1152)
+|.. .+.++.|+.+.+.|
T Consensus 89 ~~~~~~~~~~~~~~~~~iv 107 (266)
T 3cw2_C 89 ERRKKNLQWKKIQRLDKIL 107 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccccCccceee
Confidence 3321 22444554444433
No 32
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.65 E-value=3.3e-08 Score=127.21 Aligned_cols=79 Identities=9% Similarity=0.041 Sum_probs=73.9
Q ss_pred hhhhccCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCC-CCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeC
Q 001115 579 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP-GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657 (1152)
Q Consensus 579 ~~~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~-~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~ 657 (1152)
+.+++++|+++.|+|+++.++|+||++.+|+.||+|+|+|++.+ +.+|.+.|++||.|+|+|+++|++++++.||++.+
T Consensus 896 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 975 (1219)
T 3psi_A 896 SEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 975 (1219)
T ss_dssp CTTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHH
T ss_pred cHhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHH
Confidence 34677899999999999999999999999999999999999987 78999999999999999999999999999999864
No 33
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.65 E-value=3e-09 Score=134.86 Aligned_cols=81 Identities=10% Similarity=0.124 Sum_probs=0.4
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCcc-ccCccccccCCCEEEEEEEEEeCCCCeEEEEeecc
Q 001115 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1152)
Q Consensus 755 ~~~~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~-~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~ 833 (1152)
+++++++|+++.|+|++|++||+||++.+|++||+|+|++++.+ +.+|.+.|++||.|.|+|++||.+++||.||||..
T Consensus 899 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 978 (1030)
T 3psf_A 899 SEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 978 (1030)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cHHHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEechH
Confidence 45789999999999999999999999999999999999999988 88999999999999999999999999999999987
Q ss_pred cc
Q 001115 834 CC 835 (1152)
Q Consensus 834 ~~ 835 (1152)
..
T Consensus 979 dl 980 (1030)
T 3psf_A 979 DV 980 (1030)
T ss_dssp --
T ss_pred Hh
Confidence 55
No 34
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.60 E-value=4.1e-09 Score=129.02 Aligned_cols=79 Identities=24% Similarity=0.390 Sum_probs=0.0
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEeecccc
Q 001115 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1152)
Q Consensus 756 ~~~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~~~ 835 (1152)
..++++|+++.|+|++|++||+||++.++++||+|+|+++|.++.++.+.|++||.|+|+|+++|+ ++||.||+|+...
T Consensus 632 ~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~~ 710 (726)
T 4aid_A 632 TDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVDQ 710 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeeccc
Confidence 357889999999999999999999999999999999999999999999999999999999999997 7999999998754
No 35
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.58 E-value=1.1e-07 Score=99.17 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=64.7
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCCC-----------CCCCCccCCCEEEEEEEEEecCCC----
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC-----------EPSSMYHVGQVVKCRIMSSIPASR---- 648 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~~-----------~~~~~f~vGq~v~vrV~~vd~~~~---- 648 (1152)
..|+++.|+|+++.++|+||++. ++.||+|+|++.+.+.. ++.+.|++||.|+|+|+++|.+++
T Consensus 80 ~~Gev~~G~V~~v~~~G~fV~l~-~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p~~ 158 (187)
T 1go3_E 80 EMYELIEGEVVDVVEFGSFVRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRG 158 (187)
T ss_dssp CTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-----
T ss_pred CCCCEEEEEEEEEeCcEEEEEEc-CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCCCc
Confidence 57999999999999999999995 59999999999866543 677889999999999999998765
Q ss_pred -EEEEEEeeCC
Q 001115 649 -RINLSFMMKP 658 (1152)
Q Consensus 649 -ri~lS~k~~~ 658 (1152)
++.||++...
T Consensus 159 ~~I~lS~k~~~ 169 (187)
T 1go3_E 159 SKIALTMRQPY 169 (187)
T ss_dssp CEEEEECCSTT
T ss_pred cEEEEEEcCCC
Confidence 9999998753
No 36
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.57 E-value=1.6e-09 Score=133.73 Aligned_cols=131 Identities=17% Similarity=0.173 Sum_probs=52.2
Q ss_pred CCCEE--EEEEEE--EeCCeEEEEeCCCeEEEEeCCccccccccCCCCccccCCEEEEEEEEEeCCeEEEeechhhhhhh
Q 001115 498 PGMVV--KGKVIA--VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSK 573 (1152)
Q Consensus 498 ~G~iv--~g~V~~--v~~~G~~V~i~~~v~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v~~~~i~LS~K~~l~~~~ 573 (1152)
.|+++ .|++.+ +.++|++|+|++ +|.|+.++.++....... -++ +.+.+
T Consensus 609 i~~vIG~gGk~Ik~I~~~~G~~IdI~~--dG~v~Is~~~~~~~~~a~----------~~i-------------~~i~~-- 661 (757)
T 1e3p_A 609 IGEVIGPKRQMINQIQEDTGAEITIED--DGTIYIGAADGPAAEAAR----------ATI-------------NGIAN-- 661 (757)
T ss_dssp ------------CTTCCCCCSCC----------CCCBSSHHHHCC-----------------------------------
T ss_pred eehcccccceeeehhhHhhCCEEEecC--CceEEEecCCHHHHHHHH----------HHH-------------HHhcc--
Confidence 35555 245555 467899999984 899988776653322110 000 01111
Q ss_pred hhHhhhhhhccCCceEEEEEEEEecCeEEEEEcCCeEEEEecccc----CCCCCCCCCCCccCCCEEEEEEEEEecCCCE
Q 001115 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL----GLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649 (1152)
Q Consensus 574 ~~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel----~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~r 649 (1152)
..+.++|+++.|+|+++.+||+||++.+|+.||+|+|++ ++.++.++++.|++||.|+|+|+++|+ ++|
T Consensus 662 ------p~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~gr 734 (757)
T 1e3p_A 662 ------PTSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGK 734 (757)
T ss_dssp -----------------CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-SCC
T ss_pred ------hhhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCC
Confidence 134568999999999999999999999999999999999 898899999999999999999999999 999
Q ss_pred EEEEEeeCC-CCcc
Q 001115 650 INLSFMMKP-TRVS 662 (1152)
Q Consensus 650 i~lS~k~~~-~~~~ 662 (1152)
+.||+++.. ++|.
T Consensus 735 I~LS~k~~~~~pw~ 748 (757)
T 1e3p_A 735 LSLIPVIEGEEAAS 748 (757)
T ss_dssp --------------
T ss_pred EEEEEecCCCCchh
Confidence 999998753 3443
No 37
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.54 E-value=2.1e-07 Score=96.31 Aligned_cols=75 Identities=28% Similarity=0.400 Sum_probs=64.2
Q ss_pred cCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccc-----------cCccccccCCCEEEEEEEEEeCC----
Q 001115 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-----------ADLSKTYYVGQSVRSNILDVNSE---- 822 (1152)
Q Consensus 758 ~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~-----------~~~~~~f~~Gq~V~v~Vl~vd~e---- 822 (1152)
...+|+++.|.|++++++|+||++ +.++||+|++++++++. ++....|++||.|+++|+++|.+
T Consensus 78 ~p~~Gev~~G~V~~v~~~G~fv~l-~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~ 156 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNYGVFVNL-GPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGR 156 (180)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEC-SSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC-----
T ss_pred eccCCCEEEEEEeeeccceEEEEE-CCccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCcc
Confidence 345799999999999999999997 56999999999998765 46677899999999999999964
Q ss_pred CCeEEEEeecc
Q 001115 823 TGRITLSLKQS 833 (1152)
Q Consensus 823 ~~ri~LSlk~~ 833 (1152)
..||.||||+.
T Consensus 157 ~~rI~ls~k~~ 167 (180)
T 4ayb_E 157 LPRIALTMRQP 167 (180)
T ss_dssp --CEEEECCST
T ss_pred cCcEEEEcCCC
Confidence 44899999975
No 38
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.53 E-value=2.5e-08 Score=123.56 Aligned_cols=80 Identities=23% Similarity=0.329 Sum_probs=73.9
Q ss_pred hhhhccCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeCC
Q 001115 579 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658 (1152)
Q Consensus 579 ~~~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~~ 658 (1152)
.++++++|+++.|+|+++.+||+||++..++.||+|+|+|++.++.++.+.|++||.|+|+|+++|+++++|.||++...
T Consensus 648 ~~~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 648 SLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp SSTTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred chhhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 35567899999999999999999999988999999999999888888999999999999999999999999999998643
No 39
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.52 E-value=1.1e-08 Score=125.96 Aligned_cols=78 Identities=29% Similarity=0.468 Sum_probs=0.0
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEeeccc
Q 001115 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1152)
Q Consensus 756 ~~~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~~ 834 (1152)
..++++|+++.|+|+++++||+||++.++++||+|+|+++|.++.++.+.|++||.|+|+|+++|. ++|+.||+|+..
T Consensus 622 ~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~ 699 (723)
T 3cdi_A 622 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEAT 699 (723)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEecc
Confidence 357889999999999999999999999999999999999999999999999999999999999998 899999999764
No 40
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.52 E-value=4.9e-09 Score=129.54 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=38.5
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCC----CCccccCccccccCCCEEEEEEEEEeCCCCeEEEEeec
Q 001115 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA----VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1152)
Q Consensus 757 ~~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~l----s~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~ 832 (1152)
.++++|+++.|+|+++++||+||++.++++||+|+|++ +|.++.++++.|++||.|+|+|+++|. ++||.||+|+
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~ 741 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPVI 741 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-SCC-------
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEec
Confidence 45789999999999999999999999999999999999 999999999999999999999999998 8999999998
Q ss_pred ccc
Q 001115 833 SCC 835 (1152)
Q Consensus 833 ~~~ 835 (1152)
...
T Consensus 742 ~~~ 744 (757)
T 1e3p_A 742 EGE 744 (757)
T ss_dssp ---
T ss_pred CCC
Confidence 753
No 41
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.51 E-value=1.5e-07 Score=99.24 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=70.3
Q ss_pred cCCCCCEEEEEEEEEecceEEEEEC--------CCeEEEEeccCCCCcccc--CccccccCCCEEEEEEEEEeCCCCeEE
Q 001115 758 HIHPNSVVHGYVCNIIETGCFVRFL--------GRLTGFAPRSKAVDGQRA--DLSKTYYVGQSVRSNILDVNSETGRIT 827 (1152)
Q Consensus 758 ~~~~G~~v~G~V~~i~~~GvfV~~~--------~~l~Glv~~s~ls~~~~~--~~~~~f~~Gq~V~v~Vl~vd~e~~ri~ 827 (1152)
..++|+++.|.|.+++++|+||++. .++.|++|++++++.+.. ++.+.|++||.|.|+|++++.+..++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 4678999999999999999999973 578999999999988887 899999999999999999998778999
Q ss_pred EEeeccc
Q 001115 828 LSLKQSC 834 (1152)
Q Consensus 828 LSlk~~~ 834 (1152)
||+++..
T Consensus 158 LS~k~~~ 164 (209)
T 2nn6_I 158 LTTAENE 164 (209)
T ss_dssp EECCSSS
T ss_pred EEEecCC
Confidence 9999864
No 42
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.50 E-value=1.4e-08 Score=124.34 Aligned_cols=76 Identities=25% Similarity=0.398 Sum_probs=0.0
Q ss_pred hhccCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeC
Q 001115 581 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657 (1152)
Q Consensus 581 ~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~ 657 (1152)
.+.++|+++.|+|+++.+||+||+|.+++.||+|+|+++++++.++++.|++||.|+|+|+++|+ ++|+.||+|..
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~ 708 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVV 708 (726)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeec
Confidence 35678999999999999999999999999999999999999999999999999999999999998 79999999864
No 43
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.5e-08 Score=128.59 Aligned_cols=78 Identities=8% Similarity=0.032 Sum_probs=0.0
Q ss_pred hhhccCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCC-CCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeC
Q 001115 580 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP-GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657 (1152)
Q Consensus 580 ~~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~-~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~ 657 (1152)
++++++|+++.|+|+++.++|+||++.+|+.||+|+|+|++.+ +.+|.+.|++||.|+|+|+++|++++++.||++.+
T Consensus 900 ~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 978 (1030)
T 3psf_A 900 EKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 978 (1030)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEechH
Confidence 3567899999999999999999999999999999999999887 78999999999999999999999999999999865
No 44
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.48 E-value=2.2e-07 Score=104.20 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=84.3
Q ss_pred ccccCCCCEEEEEEEEEecCCCeEEEEcccccccc-----ccccccccC--CCCEEEEEEEEEeCCeEEEEeCCCeEEEE
Q 001115 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG-----LVFTHSDVK--PGMVVKGKVIAVDSFGAIVQFPGGVKALC 526 (1152)
Q Consensus 454 ~~~~~vG~~v~~rVi~~~~~~~~~~lS~k~~~~~~-----~~~~~~~l~--~G~iv~g~V~~v~~~G~~V~i~~~v~g~v 526 (1152)
...+.+|+.+++.|...+ +++....+.++.++.. ....++.+. .|++|+|+|.+++++|++|+++ +++|++
T Consensus 84 d~~~~vGd~ie~~I~~~d-fgR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlG-k~EgiL 161 (344)
T 1hh2_P 84 DPLAEVGSIVKKELNVKN-FGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIG-KLETRL 161 (344)
T ss_dssp CTTCCTTCEEEEECCCCC-SSSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEET-TEEEEE
T ss_pred CccccCCCEEEEEEcccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeC-CeEEEE
Confidence 345999999999998766 4566666656554332 223345555 8999999999999999999998 999999
Q ss_pred eCCccccccccCCCCccccCCEEEEEEEEE--eCC--eEEEeechh
Q 001115 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSK--RITVTHKKT 568 (1152)
Q Consensus 527 p~~hls~~~~~~~~~~~kvG~~V~~rVl~v--~~~--~i~LS~K~~ 568 (1152)
|.++++ |.+.|++|++|+|.|+.+ +.+ ++.||++..
T Consensus 162 p~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p 201 (344)
T 1hh2_P 162 PKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVP 201 (344)
T ss_dssp EGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSH
T ss_pred eHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeecc
Confidence 999885 667999999999999999 333 788888744
No 45
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.45 E-value=3.9e-07 Score=94.30 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=62.8
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCC-----------CCCCCCccCCCEEEEEEEEEecC----CC
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG-----------CEPSSMYHVGQVVKCRIMSSIPA----SR 648 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~-----------~~~~~~f~vGq~v~vrV~~vd~~----~~ 648 (1152)
..|+++.|+|++++++|+||++ +++.||+|.|++.+++. .++...|++||.|++||+++|++ ..
T Consensus 80 ~~Gev~~G~V~~v~~~G~fv~l-~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~~~ 158 (180)
T 4ayb_E 80 VVQEVVEGEVLQVDNYGVFVNL-GPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRLP 158 (180)
T ss_dssp CTTCEEEEEEEEEETTEEEEEC-SSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC-------
T ss_pred cCCCEEEEEEeeeccceEEEEE-CCccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCcccC
Confidence 4699999999999999999998 57999999999976653 45667899999999999999965 34
Q ss_pred EEEEEEeeCC
Q 001115 649 RINLSFMMKP 658 (1152)
Q Consensus 649 ri~lS~k~~~ 658 (1152)
|+.||+++.-
T Consensus 159 rI~ls~k~~g 168 (180)
T 4ayb_E 159 RIALTMRQPY 168 (180)
T ss_dssp CEEEECCSTT
T ss_pred cEEEEcCCCC
Confidence 8999999753
No 46
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.45 E-value=2.1e-08 Score=123.45 Aligned_cols=120 Identities=24% Similarity=0.402 Sum_probs=0.0
Q ss_pred EEEEEeCCceEEEEeCCCCCCcceeeeecccchHHHhhhccccCCCCEEEEEEEEEecCCCeEEEEcccccccccccccc
Q 001115 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494 (1152)
Q Consensus 415 ~V~~v~~~~G~~v~l~~~~~~i~Gfv~~s~~~~~~~~~~~~~~~vG~~v~~rVi~~~~~~~~~~lS~k~~~~~~~~~~~~ 494 (1152)
+|..+...+|++++++. .|.++++..++.......+ +| + ....
T Consensus 581 ~I~~I~~~~G~~IdI~~-----dg~v~I~~~~~~~~~~a~~----------~i-------------------~---~i~~ 623 (723)
T 3cdi_A 581 VIRALTEETGTTIEIED-----DGTVKIAATDGEKAKHAIR----------RI-------------------E---EITA 623 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeeehhhCceEEecC-----CccEEEecCCHHHHHHHHH----------HH-------------------H---HHhh
Confidence 45556555689998874 5777776655432221110 00 0 0124
Q ss_pred ccCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEeCCccccccccCCCCccccCCEEEEEEEEE-eCCeEEEeechhhhh
Q 001115 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLVK 571 (1152)
Q Consensus 495 ~l~~G~iv~g~V~~v~~~G~~V~i~~~v~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v-~~~~i~LS~K~~l~~ 571 (1152)
++++|++++|+|+++.++|+||++.++++||||.++++|.+..++.+.|++||+|+++|+.+ .+++|.||+|+.+.+
T Consensus 624 ~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~~~~~ 701 (723)
T 3cdi_A 624 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQ 701 (723)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred hhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCCcEEEEEEeccCC
Confidence 68899999999999999999999998999999999999988889999999999999999999 578999999987654
No 47
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.44 E-value=4.5e-07 Score=92.93 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=55.7
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccccCcc----------ccccCCCEEEEEEEEEeCCCC
Q 001115 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS----------KTYYVGQSVRSNILDVNSETG 824 (1152)
Q Consensus 759 ~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~~~~~----------~~f~~Gq~V~v~Vl~vd~e~~ 824 (1152)
..+|+++.|.|++++++|+||++.+ .+||+|.|++++.+.-++. +.|++||.|+++|+++|.+.+
T Consensus 81 ~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT
T ss_pred CCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC
Confidence 4589999999999999999999988 9999999999875443322 569999999999999998764
No 48
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.42 E-value=3.8e-07 Score=96.07 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=67.7
Q ss_pred ccCCceEEEEEEEEecCeEEEEEc--------CCeEEEEeccccCCCCCC--CCCCCccCCCEEEEEEEEEecCCCEEEE
Q 001115 583 ATDRLITHGWITKIEKHGCFVRFY--------NGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIMSSIPASRRINL 652 (1152)
Q Consensus 583 ~~~G~~~~G~V~~i~~~G~~V~~~--------~gv~Gflp~sel~~~~~~--~~~~~f~vGq~v~vrV~~vd~~~~ri~l 652 (1152)
.++|+++.|+|+++.++|+||++. .++.|++|++++++.+.. ++.+.|++||.|+|+|+++|..+.++.|
T Consensus 79 p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~L 158 (209)
T 2nn6_I 79 PDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLL 158 (209)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEEE
Confidence 467999999999999999999984 477899999999887776 7889999999999999999988789999
Q ss_pred EEeeC
Q 001115 653 SFMMK 657 (1152)
Q Consensus 653 S~k~~ 657 (1152)
|++..
T Consensus 159 S~k~~ 163 (209)
T 2nn6_I 159 TTAEN 163 (209)
T ss_dssp ECCSS
T ss_pred EEecC
Confidence 99864
No 49
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.40 E-value=4.6e-07 Score=95.63 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=61.7
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccccCcc----------ccccCCCEEEEEEEEEeCCCC---e
Q 001115 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS----------KTYYVGQSVRSNILDVNSETG---R 825 (1152)
Q Consensus 759 ~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~~~~~----------~~f~~Gq~V~v~Vl~vd~e~~---r 825 (1152)
.++|+++.|.|++++++|+||++.+ ++||+|+++|++.+.-++. +.|++||.|+++|+++|.+.+ +
T Consensus 81 p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~ 159 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 159 (215)
T ss_dssp CCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEE
T ss_pred cCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccEE
Confidence 4689999999999999999999977 9999999999876553333 569999999999999998765 5
Q ss_pred EEEEeecc
Q 001115 826 ITLSLKQS 833 (1152)
Q Consensus 826 i~LSlk~~ 833 (1152)
+. ||++.
T Consensus 160 Ig-Smk~~ 166 (215)
T 2b8k_G 160 IG-SIKED 166 (215)
T ss_dssp EE-ECCST
T ss_pred EE-EcCCC
Confidence 55 77764
No 50
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.40 E-value=5.9e-07 Score=92.25 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=59.6
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccccCc------------cccccCCCEEEEEEEEEeCCCC--
Q 001115 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL------------SKTYYVGQSVRSNILDVNSETG-- 824 (1152)
Q Consensus 759 ~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~~~~------------~~~f~~Gq~V~v~Vl~vd~e~~-- 824 (1152)
-.+|+++.|.|++++++|+||++ +.++||+|.+++++.+.-++ ...|++||.|+++|+++|.+.+
T Consensus 79 ~~~Gev~~G~V~~v~~fG~fV~l-~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~ 157 (172)
T 2c35_B 79 PFKGEVVDAVVTQVNKVGLFTEI-GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDI 157 (172)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEE-TTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEE
T ss_pred CCCCCEEEEEEEEEeCCEEEEEE-CCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCc
Confidence 35799999999999999999999 56789999999986544322 4479999999999999998766
Q ss_pred -eEEEEeecc
Q 001115 825 -RITLSLKQS 833 (1152)
Q Consensus 825 -ri~LSlk~~ 833 (1152)
++. ||++.
T Consensus 158 ~~ig-sm~~~ 166 (172)
T 2c35_B 158 FAIG-SLMDD 166 (172)
T ss_dssp EEEE-ECCST
T ss_pred EEEE-EecCC
Confidence 444 77653
No 51
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.38 E-value=5.2e-07 Score=92.97 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=65.4
Q ss_pred CCCCCEEEEEEEEEecceEEEEECC----------CeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEE
Q 001115 759 IHPNSVVHGYVCNIIETGCFVRFLG----------RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828 (1152)
Q Consensus 759 ~~~G~~v~G~V~~i~~~GvfV~~~~----------~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~L 828 (1152)
.+ |+++.|.|+++.++|+||++.. +++|++|++++++.++.++.+.|++||.|.|+|++ +++.|
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~L 129 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLRL 129 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTEE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEEE
Confidence 46 9999999999999999999977 89999999999999999999999999999999997 88999
Q ss_pred Eeeccc
Q 001115 829 SLKQSC 834 (1152)
Q Consensus 829 Slk~~~ 834 (1152)
|++...
T Consensus 130 S~k~~~ 135 (179)
T 3m7n_A 130 STKEEE 135 (179)
T ss_dssp ECCSTT
T ss_pred EEecCC
Confidence 998753
No 52
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.37 E-value=3.4e-07 Score=102.62 Aligned_cols=108 Identities=15% Similarity=0.188 Sum_probs=81.9
Q ss_pred CccccCCEEEEEEEEEe-CCeEEEeechhhhhhhhhH--hhhhhhcc--CCceEEEEEEEEecCeEEEEEcCCeEEEEec
Q 001115 541 KKFKVGAELVFRVLGVK-SKRITVTHKKTLVKSKLAI--LSSYAEAT--DRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1152)
Q Consensus 541 ~~~kvG~~V~~rVl~v~-~~~i~LS~K~~l~~~~~~~--~~~~~~~~--~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~ 615 (1152)
..+.+|+.+++.|...+ .+....|.|+.+....... -.-|+++. .|+++.|+|.++.++|+||++ +++.|++|.
T Consensus 85 ~~~~vGd~ie~~I~~~dfgR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDl-Gk~EgiLp~ 163 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRI-GKLETRLPK 163 (344)
T ss_dssp TTCCTTCEEEEECCCCCSSSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEE-TTEEEEEEG
T ss_pred ccccCCCEEEEEEccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEe-CCeEEEEeH
Confidence 35889999999986664 4445556677665432211 01133333 799999999999999999999 599999999
Q ss_pred cccCCCCCCCCCCCccCCCEEEEEEEEEecCCC--EEEEEEe
Q 001115 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFM 655 (1152)
Q Consensus 616 sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~--ri~lS~k 655 (1152)
+++. |.+.|++|+.++|.|++++.+++ ++.||..
T Consensus 164 sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt 199 (344)
T 1hh2_P 164 KEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR 199 (344)
T ss_dssp GGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS
T ss_pred HHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee
Confidence 9996 45689999999999999998766 5666664
No 53
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.30 E-value=1.2e-06 Score=89.66 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=54.0
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCCCCC----------CCCccCCCEEEEEEEEEecCCC
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP----------SSMYHVGQVVKCRIMSSIPASR 648 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~~~~----------~~~f~vGq~v~vrV~~vd~~~~ 648 (1152)
++|+++.|+|++++++|+||++.+ .+||+|+|+|+..+.-++ ++.|++||.|+++|+++|.+.+
T Consensus 82 ~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT
T ss_pred CCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC
Confidence 479999999999999999999976 999999999964322111 2569999999999999998765
No 54
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.30 E-value=1.4e-06 Score=91.93 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=58.4
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCCCCCC----------CCccCCCEEEEEEEEEecCCC---EE
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS----------SMYHVGQVVKCRIMSSIPASR---RI 650 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~~~~~----------~~f~vGq~v~vrV~~vd~~~~---ri 650 (1152)
++|+++.|+|++++++|+||++.. .+||+|+|+|...+.-++. +.|++||.|+++|+++|.+.+ ++
T Consensus 82 ~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~I 160 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAI 160 (215)
T ss_dssp CTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEEE
T ss_pred CCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccEEE
Confidence 579999999999999999999976 9999999999654332222 569999999999999999875 44
Q ss_pred EEEEee
Q 001115 651 NLSFMM 656 (1152)
Q Consensus 651 ~lS~k~ 656 (1152)
. |+++
T Consensus 161 g-Smk~ 165 (215)
T 2b8k_G 161 G-SIKE 165 (215)
T ss_dssp E-ECCS
T ss_pred E-EcCC
Confidence 4 6654
No 55
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.29 E-value=9.4e-07 Score=91.05 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=63.3
Q ss_pred cCCceEEEEEEEEecCeEEEEEcC----------CeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEE
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYN----------GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~----------gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS 653 (1152)
+ |+++.|+|+++.++|+||++.. +..|+||+|++++.+..++.+.|++||.|+|+|++ +++.||
T Consensus 57 ~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~LS 130 (179)
T 3m7n_A 57 K-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLRLS 130 (179)
T ss_dssp T-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTEEE
T ss_pred C-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEEEE
Confidence 5 9999999999999999999987 89999999999988888899999999999999997 789999
Q ss_pred EeeC
Q 001115 654 FMMK 657 (1152)
Q Consensus 654 ~k~~ 657 (1152)
++..
T Consensus 131 ~k~~ 134 (179)
T 3m7n_A 131 TKEE 134 (179)
T ss_dssp CCST
T ss_pred EecC
Confidence 9754
No 56
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.27 E-value=1.5e-06 Score=89.28 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=57.6
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCC----CC--------CCCCCccCCCEEEEEEEEEecCCC---
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP----GC--------EPSSMYHVGQVVKCRIMSSIPASR--- 648 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~----~~--------~~~~~f~vGq~v~vrV~~vd~~~~--- 648 (1152)
++|+++.|+|++++++|+||++ +..+||+|+|+|.... .. +....|++||.|+++|+++|.+.+
T Consensus 80 ~~Gev~~G~V~~v~~fG~fV~l-~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~ 158 (172)
T 2c35_B 80 FKGEVVDAVVTQVNKVGLFTEI-GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIF 158 (172)
T ss_dssp CTTCEEEEEEEEEETTEEEEEE-TTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEE
T ss_pred CCCCEEEEEEEEEeCCEEEEEE-CCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCcE
Confidence 4799999999999999999999 5788999999996432 22 124579999999999999998766
Q ss_pred EEEEEEee
Q 001115 649 RINLSFMM 656 (1152)
Q Consensus 649 ri~lS~k~ 656 (1152)
++. |+++
T Consensus 159 ~ig-sm~~ 165 (172)
T 2c35_B 159 AIG-SLMD 165 (172)
T ss_dssp EEE-ECCS
T ss_pred EEE-EecC
Confidence 333 6654
No 57
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.16 E-value=2.2e-06 Score=92.88 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=67.1
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccc---cCccccccCCCEEEEEEEEEeCCCCeEEEEeecc
Q 001115 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR---ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1152)
Q Consensus 759 ~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~---~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~ 833 (1152)
.++|++|.|.|..+.++|+||++.+...|++|++++++.+. .++.+.|++||.|.|+|++++.+ +++.||++..
T Consensus 72 p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~-~~i~LS~r~~ 148 (251)
T 2je6_I 72 PKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRS-IDPVLSVKGK 148 (251)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETT-EEEEEECCST
T ss_pred CCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCC-CcEEEEEccc
Confidence 57899999999999999999999889999999999987666 77888999999999999999964 6899998754
No 58
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.14 E-value=1.1e-06 Score=90.01 Aligned_cols=72 Identities=21% Similarity=0.318 Sum_probs=59.2
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccccCc----------cccccCCCEEEEEEEEEeCCCC---e
Q 001115 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL----------SKTYYVGQSVRSNILDVNSETG---R 825 (1152)
Q Consensus 759 ~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~~~~----------~~~f~~Gq~V~v~Vl~vd~e~~---r 825 (1152)
..+|+++.|.|++++++|+||++ +.++||+|.++|++.+.-++ ...|++||.|+++|+++|.+.+ +
T Consensus 82 p~~Gev~~G~V~~v~~fG~FV~l-~~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~~~ 160 (172)
T 3h0g_G 82 PFRGEVVDAIVTTVNKMGFFANI-GPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIFA 160 (172)
T ss_dssp CCTTCEEECCCCEEETTEEECCB-TTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEEE
T ss_pred cCCCCEEEEEEEEEEcceEEEEe-CCeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCceE
Confidence 34799999999999999999998 46889999999987654443 4689999999999999998774 4
Q ss_pred EEEEeec
Q 001115 826 ITLSLKQ 832 (1152)
Q Consensus 826 i~LSlk~ 832 (1152)
+- ||++
T Consensus 161 Ig-tm~~ 166 (172)
T 3h0g_G 161 IA-TMKE 166 (172)
T ss_dssp EE-ECCS
T ss_pred EE-EcCC
Confidence 44 5554
No 59
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.14 E-value=2.8e-06 Score=91.43 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=64.2
Q ss_pred ccCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCC----CCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEee
Q 001115 583 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD----PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1152)
Q Consensus 583 ~~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~----~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~ 656 (1152)
.++|+++.|+|+.+.++|+||++..+..|++|++++... ...++.+.|++||.|+|+|++++.. +++.||++.
T Consensus 64 p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~-~~i~LS~k~ 140 (235)
T 2z0s_A 64 PQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKT-RSPLLTVQG 140 (235)
T ss_dssp CCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTT-SCEEEECCS
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCC-CcEEEEEec
Confidence 367999999999999999999998889999999999652 3457778999999999999999964 589999874
No 60
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.12 E-value=3.7e-06 Score=91.08 Aligned_cols=72 Identities=21% Similarity=0.102 Sum_probs=65.0
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCC---CCCCCCccCCCEEEEEEEEEecCCCEEEEEEee
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~---~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~ 656 (1152)
++|+++.|+|+.+.++|+||++.++..|+||++++...+. .++.+.|++||.|+|+|++++.. +++.||++.
T Consensus 73 ~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~-~~i~LS~r~ 147 (251)
T 2je6_I 73 KINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRS-IDPVLSVKG 147 (251)
T ss_dssp CTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETT-EEEEEECCS
T ss_pred CCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCC-CcEEEEEcc
Confidence 5799999999999999999999888999999999976555 67888999999999999999974 689999874
No 61
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.09 E-value=7.3e-06 Score=87.65 Aligned_cols=74 Identities=18% Similarity=0.341 Sum_probs=66.6
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCc-cccCccccccCCCEEEEEEEEEeCCCCeEEEEeecc
Q 001115 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1152)
Q Consensus 759 ~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~-~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~ 833 (1152)
.++|++|.|.|..+.++|+||++.+..+|++|.+++++. +..+..+.|++||.|.|+|++++.+ +++.||+++.
T Consensus 55 p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~-~~i~LS~r~~ 129 (229)
T 2ba0_A 55 PSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPK-MKVTLTMKDR 129 (229)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTT-CCEEEECCSS
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCC-CcEEEEEccc
Confidence 578999999999999999999998889999999999963 6677888999999999999999964 6899998754
No 62
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.08 E-value=3.4e-06 Score=90.74 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=66.3
Q ss_pred cCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCC----ccccCccccccCCCEEEEEEEEEeCCCCeEEEEeecc
Q 001115 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD----GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1152)
Q Consensus 758 ~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~----~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk~~ 833 (1152)
..++|+++.|+|.++.++|+||++.+.+.|++|.+++++ .+..++.+.|++||.|.|+|++++.+ +++.||++..
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~-~~i~LS~k~~ 141 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKT-RSPLLTVQGE 141 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTT-SCEEEECCSS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCC-CcEEEEEecc
Confidence 357899999999999999999999889999999999976 24567888999999999999999964 5899998754
No 63
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.07 E-value=2e-06 Score=88.14 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=55.2
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCCCCC----------CCCccCCCEEEEEEEEEecCCCE
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP----------SSMYHVGQVVKCRIMSSIPASRR 649 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~~~~----------~~~f~vGq~v~vrV~~vd~~~~r 649 (1152)
+.|+++.|+|++++++|+||++ +.++||+|.|+|++...-++ ...|++||.|++||+++|.+.++
T Consensus 83 ~~Gev~~G~V~~v~~fG~FV~l-~~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~ 157 (172)
T 3h0g_G 83 FRGEVVDAIVTTVNKMGFFANI-GPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATE 157 (172)
T ss_dssp CTTCEEECCCCEEETTEEECCB-TTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSC
T ss_pred CCCCEEEEEEEEEEcceEEEEe-CCeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCC
Confidence 4699999999999999999999 57889999999965433333 45799999999999999998743
No 64
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.02 E-value=7.7e-06 Score=75.85 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=62.6
Q ss_pred cCCCEEEEEEEEE---eCCcEEEEEeeCCceEEEEeCCCcCCccccccccccccCCCCeEeEEEEeecccCceeeecchh
Q 001115 668 KLGSLVSGVVDVV---TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744 (1152)
Q Consensus 668 ~vG~iv~g~V~~v---~~~g~~V~l~~~~~v~G~ip~~hlsd~~~~~~~~~~~lk~G~~v~~vl~~d~~~~~i~lS~K~s 744 (1152)
..++.++|+|+.. ..+| |+... .++.+++++...|++.. +
T Consensus 12 ~~~~~~~G~Vk~fn~~kGfG-FI~~~-~gg~dvfvH~s~l~~~~---------~-------------------------- 54 (101)
T 2bh8_A 12 LQSGKMTGIVKWFNADKGFG-FITPD-DGSKDVFVHFSAGSSGA---------A-------------------------- 54 (101)
T ss_dssp ----CEEEEEEEEEGGGTEE-EEEES-SSSCEEEEECCCSCSSS---------C--------------------------
T ss_pred cccccceeEEEEEECCCCCE-EEEeC-CCCcEEEEEEEEEecCC---------c--------------------------
Confidence 4567889999987 5677 66551 34689999666554321 0
Q ss_pred hccccccCCCccccCCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccc
Q 001115 745 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799 (1152)
Q Consensus 745 l~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~ 799 (1152)
....+++|+.+.+.|..++++|+||++.++++||+|+|+++|.++
T Consensus 55 ----------~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 55 ----------VRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQA 99 (101)
T ss_dssp ----------CCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECCC
T ss_pred ----------cccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCcC
Confidence 013567899999999999999999999899999999999998653
No 65
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.00 E-value=1.2e-05 Score=86.08 Aligned_cols=72 Identities=21% Similarity=0.371 Sum_probs=64.6
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCC-CCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEee
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~-~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~ 656 (1152)
++|+++.|+|+.+.++|+||++.+...|++|++++... ...+..+.|++||.|.|+|++++. ++++.||++.
T Consensus 56 ~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~ 128 (229)
T 2ba0_A 56 SVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKD 128 (229)
T ss_dssp CTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCS
T ss_pred CCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEcc
Confidence 57999999999999999999998789999999999853 456777899999999999999997 4789999874
No 66
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.84 E-value=3e-05 Score=71.91 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=63.4
Q ss_pred cCCCCEEEEEEEEEe---CCeEEEEeC-CCeEEEEeCCccccccccCCCCccccCCEEEEEEEEEeCCeEEEeechhhhh
Q 001115 496 VKPGMVVKGKVIAVD---SFGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK 571 (1152)
Q Consensus 496 l~~G~iv~g~V~~v~---~~G~~V~i~-~~v~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v~~~~i~LS~K~~l~~ 571 (1152)
..+++.++|+|+... .+| |+.-. ++.++|+|.+.+.+.. | .
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~-------~-------------------------~-- 55 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGA-------A-------------------------V-- 55 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSS-------C-------------------------C--
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCC-------c-------------------------c--
Confidence 456788999999984 468 55544 4699999998886532 1 0
Q ss_pred hhhhHhhhhhhccCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCC
Q 001115 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 623 (1152)
Q Consensus 572 ~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~ 623 (1152)
...+.+|+.+.+.|+.+.++|+||++.+++.||+|+|+|+|.++
T Consensus 56 --------~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 56 --------RGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQA 99 (101)
T ss_dssp --------CCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECCC
T ss_pred --------ccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCcC
Confidence 02235799999999999999999999889999999999987643
No 67
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.55 E-value=0.00015 Score=89.33 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=62.0
Q ss_pred cCCCCC--EEEEEEEEEecceEEEEE-CCCeEEEEeccCCCC--cc-cc---------CccccccCCCEEEEEEEEEeCC
Q 001115 758 HIHPNS--VVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVD--GQ-RA---------DLSKTYYVGQSVRSNILDVNSE 822 (1152)
Q Consensus 758 ~~~~G~--~v~G~V~~i~~~GvfV~~-~~~l~Glv~~s~ls~--~~-~~---------~~~~~f~~Gq~V~v~Vl~vd~e 822 (1152)
.-++|+ .+.|+|.+++++|+||++ ..|++||+|.+++++ .+ .- +....|++||.|+|+|.++|.+
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETT
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCC
Confidence 346799 999999999999999999 478999999999973 21 11 3345799999999999999999
Q ss_pred CCeEEEEe
Q 001115 823 TGRITLSL 830 (1152)
Q Consensus 823 ~~ri~LSl 830 (1152)
+++|.+++
T Consensus 635 ~~~I~~~l 642 (644)
T 2id0_A 635 TRSIIARP 642 (644)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 99999986
No 68
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.46 E-value=0.00022 Score=87.83 Aligned_cols=72 Identities=24% Similarity=0.245 Sum_probs=61.0
Q ss_pred ccCCc--eEEEEEEEEecCeEEEEE-cCCeEEEEeccccCC--CC---C-------CCCCCCccCCCEEEEEEEEEecCC
Q 001115 583 ATDRL--ITHGWITKIEKHGCFVRF-YNGVQGFAPRSELGL--DP---G-------CEPSSMYHVGQVVKCRIMSSIPAS 647 (1152)
Q Consensus 583 ~~~G~--~~~G~V~~i~~~G~~V~~-~~gv~Gflp~sel~~--~~---~-------~~~~~~f~vGq~v~vrV~~vd~~~ 647 (1152)
-++|+ .+.|+|+++.++|+||++ ..|++||+|.|+|.. +. . .+....|++||.|+|+|+++|+++
T Consensus 556 ~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~ 635 (644)
T 2id0_A 556 DKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMET 635 (644)
T ss_dssp GGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTT
T ss_pred hccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCC
Confidence 35799 999999999999999999 468999999999963 11 0 033456999999999999999999
Q ss_pred CEEEEEE
Q 001115 648 RRINLSF 654 (1152)
Q Consensus 648 ~ri~lS~ 654 (1152)
++|.+++
T Consensus 636 ~~I~~~l 642 (644)
T 2id0_A 636 RSIIARP 642 (644)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 9999987
No 69
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.45 E-value=0.00021 Score=75.05 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=52.7
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccc-------------------cCccccccCCCEEEEEEEEEe
Q 001115 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-------------------ADLSKTYYVGQSVRSNILDVN 820 (1152)
Q Consensus 760 ~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~-------------------~~~~~~f~~Gq~V~v~Vl~vd 820 (1152)
.+|+++.|.|++++++|+||++ +.++|++|.+++.+.+. ++....|+.||.|+++|.+++
T Consensus 80 ~~GEv~~G~Vs~vt~~GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 158 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEEGIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESED 158 (203)
T ss_dssp CTTCEEEEEEEEEETTEEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEE-eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEEE
Confidence 4699999999999999999998 68899999999875432 334556999999999999998
Q ss_pred CC
Q 001115 821 SE 822 (1152)
Q Consensus 821 ~e 822 (1152)
..
T Consensus 159 ~~ 160 (203)
T 3ayh_B 159 FV 160 (203)
T ss_dssp EC
T ss_pred cc
Confidence 63
No 70
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.44 E-value=0.00027 Score=79.42 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=62.7
Q ss_pred cccCC--CCCEEEEEEEE----EecceEEEEECC---CeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeE
Q 001115 756 ASHIH--PNSVVHGYVCN----IIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826 (1152)
Q Consensus 756 ~~~~~--~G~~v~G~V~~----i~~~GvfV~~~~---~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri 826 (1152)
|++++ +|++++|+|.. +.+.++||++.+ +.+|++|.+++. |.+.|++||.|+|+|++|+.+.+..
T Consensus 123 ~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~kgp 196 (366)
T 1k0r_A 123 YGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREP 196 (366)
T ss_dssp ----CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSC
T ss_pred HHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCCcc
Confidence 44554 89999999999 999999999965 599999999986 4579999999999999999876554
Q ss_pred EEEeeccccCCCchhhhhhhhh
Q 001115 827 TLSLKQSCCSSTDASFMQEHFL 848 (1152)
Q Consensus 827 ~LSlk~~~~~~~~~~~~~~~~~ 848 (1152)
.+.+..+ .+.++..+|.
T Consensus 197 qI~LSRT-----~p~lv~~Lfe 213 (366)
T 1k0r_A 197 LITLSRT-----HPNLVRKLFS 213 (366)
T ss_dssp EEEEESS-----CHHHHHHHHH
T ss_pred EEEEEeC-----ChHHHHHHHH
Confidence 4444332 3456666663
No 71
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.37 E-value=0.00027 Score=74.21 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=53.1
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCC-------------------CCCCCCccCCCEEEEEEEEEe
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG-------------------CEPSSMYHVGQVVKCRIMSSI 644 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~-------------------~~~~~~f~vGq~v~vrV~~vd 644 (1152)
+.|+++.|+|++++++|+||++ +.+.|++|.+++..++. .+....|++|+.|++||+++|
T Consensus 80 ~~GEv~~G~Vs~vt~~GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 158 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEEGIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESED 158 (203)
T ss_dssp CTTCEEEEEEEEEETTEEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEE-eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEEE
Confidence 4699999999999999999999 68899999999954431 233456999999999999999
Q ss_pred cCC
Q 001115 645 PAS 647 (1152)
Q Consensus 645 ~~~ 647 (1152)
..+
T Consensus 159 ~~~ 161 (203)
T 3ayh_B 159 FVD 161 (203)
T ss_dssp ECC
T ss_pred ccc
Confidence 754
No 72
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00033 Score=74.04 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=53.7
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccc--------------cCccccccCCCEEEEEEEEEeCCCC
Q 001115 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR--------------ADLSKTYYVGQSVRSNILDVNSETG 824 (1152)
Q Consensus 760 ~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~--------------~~~~~~f~~Gq~V~v~Vl~vd~e~~ 824 (1152)
.+|+++.|.|.+++++|+||++.+.++|+++.+++.+++. ++-...|+.||.|+++|.++|.+.+
T Consensus 80 ~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~ 158 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDV 158 (218)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccC
Confidence 4699999999999999999999778899999999865432 2234569999999999999996543
No 73
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.30 E-value=0.0004 Score=73.82 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=57.8
Q ss_pred CCCCEEEEEEEE----EeCCeEEEEeCC---CeEEEEeCCccccccccCCCCccccCCEEEEEEEEE-e---CCeEEEee
Q 001115 497 KPGMVVKGKVIA----VDSFGAIVQFPG---GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-K---SKRITVTH 565 (1152)
Q Consensus 497 ~~G~iv~g~V~~----v~~~G~~V~i~~---~v~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v-~---~~~i~LS~ 565 (1152)
+.|++|+|+|.+ +++..++|+++. +.+|++|..++. |.+.|++|+.|+|.|+.+ . ..+|.||+
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLSR 79 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 79 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEEe
Confidence 589999999999 899999999986 599999998874 668999999999999999 2 35899999
Q ss_pred chh
Q 001115 566 KKT 568 (1152)
Q Consensus 566 K~~ 568 (1152)
...
T Consensus 80 t~p 82 (251)
T 2asb_A 80 THP 82 (251)
T ss_dssp SCH
T ss_pred ccH
Confidence 743
No 74
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.27 E-value=0.00041 Score=77.94 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=55.9
Q ss_pred ccccccC--CCCEEEEEEEE----EeCCeEEEEeCC---CeEEEEeCCccccccccCCCCccccCCEEEEEEEEE--e--
Q 001115 491 FTHSDVK--PGMVVKGKVIA----VDSFGAIVQFPG---GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K-- 557 (1152)
Q Consensus 491 ~~~~~l~--~G~iv~g~V~~----v~~~G~~V~i~~---~v~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v--~-- 557 (1152)
..++.+. .|++|+|+|.+ +++.+++|+++. +++|++|..++. |.+.|++|+.|+|.|+.+ +
T Consensus 121 ~i~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~k 194 (366)
T 1k0r_A 121 RTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAR 194 (366)
T ss_dssp ------CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSS
T ss_pred HHHHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCC
Confidence 3445555 99999999999 999999999986 599999998875 568999999999999999 2
Q ss_pred CCeEEEeec
Q 001115 558 SKRITVTHK 566 (1152)
Q Consensus 558 ~~~i~LS~K 566 (1152)
..+|.||+.
T Consensus 195 gpqI~LSRT 203 (366)
T 1k0r_A 195 EPLITLSRT 203 (366)
T ss_dssp SCEEEEESS
T ss_pred ccEEEEEeC
Confidence 236778775
No 75
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00037 Score=73.64 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=53.4
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCC--------------CCCCCCccCCCEEEEEEEEEecCCC
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG--------------CEPSSMYHVGQVVKCRIMSSIPASR 648 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~--------------~~~~~~f~vGq~v~vrV~~vd~~~~ 648 (1152)
..|+++.|+|++++++|+||++.+.+.|++|.+++..++. .+....|++|+.|++||.++|..++
T Consensus 80 ~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~ 158 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDV 158 (218)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccC
Confidence 4699999999999999999999777899999999954321 2234469999999999999998764
No 76
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.22 E-value=0.00058 Score=80.61 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEEEEEecc--eEEEEECCCeEEEEeccCCCCccc---------cCccccccCCCEEEEEEEEEeCCCCeE
Q 001115 758 HIHPNSVVHGYVCNIIET--GCFVRFLGRLTGFAPRSKAVDGQR---------ADLSKTYYVGQSVRSNILDVNSETGRI 826 (1152)
Q Consensus 758 ~~~~G~~v~G~V~~i~~~--GvfV~~~~~l~Glv~~s~ls~~~~---------~~~~~~f~~Gq~V~v~Vl~vd~e~~ri 826 (1152)
...+|.++.|.|+++.++ |+||+++.+-.||+|.+++++.+. .+.++.+++||.|.|+|......++.-
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa 121 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGA 121 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCc
Confidence 356899999999999999 999999999999999999987653 245677999999999999977666665
Q ss_pred EEEee
Q 001115 827 TLSLK 831 (1152)
Q Consensus 827 ~LSlk 831 (1152)
.||..
T Consensus 122 ~lTt~ 126 (517)
T 2bx2_L 122 ALTTF 126 (517)
T ss_dssp EEESS
T ss_pred eEEee
Confidence 55543
No 77
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.01 E-value=0.00075 Score=79.72 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=60.1
Q ss_pred ccCCceEEEEEEEEecC--eEEEEEcCCeEEEEeccccCCCCC---------CCCCCCccCCCEEEEEEEEEecCCCEEE
Q 001115 583 ATDRLITHGWITKIEKH--GCFVRFYNGVQGFAPRSELGLDPG---------CEPSSMYHVGQVVKCRIMSSIPASRRIN 651 (1152)
Q Consensus 583 ~~~G~~~~G~V~~i~~~--G~~V~~~~gv~Gflp~sel~~~~~---------~~~~~~f~vGq~v~vrV~~vd~~~~ri~ 651 (1152)
..+|.++.|+|+++.++ |+||++..|-.||+|.+++++.+. .+.++.+++||.|.|+|++.....+.-.
T Consensus 43 ~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~ 122 (517)
T 2bx2_L 43 QKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAA 122 (517)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCE
T ss_pred CCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCce
Confidence 35799999999999999 999999999999999999975432 2345678999999999999776666566
Q ss_pred EEEe
Q 001115 652 LSFM 655 (1152)
Q Consensus 652 lS~k 655 (1152)
||..
T Consensus 123 lTt~ 126 (517)
T 2bx2_L 123 LTTF 126 (517)
T ss_dssp EESS
T ss_pred EEee
Confidence 6654
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.98 E-value=0.0015 Score=69.41 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=62.8
Q ss_pred CCCCEEEEEEEE----EecceEEEEECC---CeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCC--CeEEEEe
Q 001115 760 HPNSVVHGYVCN----IIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSL 830 (1152)
Q Consensus 760 ~~G~~v~G~V~~----i~~~GvfV~~~~---~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~--~ri~LSl 830 (1152)
+.|++++|+|.. +.+..+||++.. +.+|++|.+++. |.+.|++||.|+|+|++++.+. .++.||-
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLSR 79 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 79 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEEe
Confidence 479999999999 788899999965 599999999986 4679999999999999999764 5788885
Q ss_pred eccccCCCchhhhhhhhh
Q 001115 831 KQSCCSSTDASFMQEHFL 848 (1152)
Q Consensus 831 k~~~~~~~~~~~~~~~~~ 848 (1152)
. .+.++..+|.
T Consensus 80 t-------~p~lvk~Lfe 90 (251)
T 2asb_A 80 T-------HPNLVRKLFS 90 (251)
T ss_dssp S-------CHHHHHHHHH
T ss_pred c-------cHHHHHHHHH
Confidence 4 3455666663
No 79
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=96.87 E-value=0.00091 Score=83.86 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=52.0
Q ss_pred CEEEEEEEEEecceEEEEECC-CeEEEEeccCCC--Ccc---c--------cC----ccccccCCCEEEEEEEEEeCC--
Q 001115 763 SVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAV--DGQ---R--------AD----LSKTYYVGQSVRSNILDVNSE-- 822 (1152)
Q Consensus 763 ~~v~G~V~~i~~~GvfV~~~~-~l~Glv~~s~ls--~~~---~--------~~----~~~~f~~Gq~V~v~Vl~vd~e-- 822 (1152)
+.+.|+|..++++|+||.+.. +++|++|.++++ +.+ . .+ ....|++||.|.|+|..+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 799999999999999999987 899999999985 322 1 12 246799999999999999988
Q ss_pred -CCeEEEEee
Q 001115 823 -TGRITLSLK 831 (1152)
Q Consensus 823 -~~ri~LSlk 831 (1152)
++||.|+||
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 689999886
No 80
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.001 Score=85.03 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=59.4
Q ss_pred CCEEEEEEEEEecceEEEEECC-CeEEEEeccCCC--Ccc---c--------cC----ccccccCCCEEEEEEEEEeCC-
Q 001115 762 NSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAV--DGQ---R--------AD----LSKTYYVGQSVRSNILDVNSE- 822 (1152)
Q Consensus 762 G~~v~G~V~~i~~~GvfV~~~~-~l~Glv~~s~ls--~~~---~--------~~----~~~~f~~Gq~V~v~Vl~vd~e- 822 (1152)
|+.+.|+|..++++|+||.+.. |++|++|.+++. +.+ . .+ ....|++||.|+|+|..+|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 8999999999999999999987 899999999997 332 1 11 346799999999999999874
Q ss_pred --CCeEEEEee
Q 001115 823 --TGRITLSLK 831 (1152)
Q Consensus 823 --~~ri~LSlk 831 (1152)
++||.|+||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 379999986
No 81
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=96.68 E-value=0.0014 Score=82.24 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=51.7
Q ss_pred ceEEEEEEEEecCeEEEEEcC-CeEEEEeccccC--CCC-----------CCC----CCCCccCCCEEEEEEEEEecC--
Q 001115 587 LITHGWITKIEKHGCFVRFYN-GVQGFAPRSELG--LDP-----------GCE----PSSMYHVGQVVKCRIMSSIPA-- 646 (1152)
Q Consensus 587 ~~~~G~V~~i~~~G~~V~~~~-gv~Gflp~sel~--~~~-----------~~~----~~~~f~vGq~v~vrV~~vd~~-- 646 (1152)
..+.|+|+++.++|+||.+.+ |++|++|.++|+ .+. ..+ ....|++||.|+|+|+.+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 789999999999999999987 899999999985 211 012 246799999999999999988
Q ss_pred -CCEEEEEEe
Q 001115 647 -SRRINLSFM 655 (1152)
Q Consensus 647 -~~ri~lS~k 655 (1152)
++||.||+|
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 689999875
No 82
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.63 E-value=0.0018 Score=71.70 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=60.3
Q ss_pred CCCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCc-c---c------cCccccccCCCEEEEEEEEEeCCCCeEEE
Q 001115 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-Q---R------ADLSKTYYVGQSVRSNILDVNSETGRITL 828 (1152)
Q Consensus 759 ~~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~-~---~------~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~L 828 (1152)
.++|++|.|.|..+.++|+||++.....|++|.++++.. . . .+....|++||.|.|+|++++. ...+.|
T Consensus 93 P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~-~~~i~L 171 (308)
T 2nn6_H 93 GEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS-DGAVSL 171 (308)
T ss_dssp CCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-TTEEEE
T ss_pred CCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC-CCCEEE
Confidence 468999999999999999999998788999999998642 2 1 1234679999999999999994 568999
Q ss_pred Eeecc
Q 001115 829 SLKQS 833 (1152)
Q Consensus 829 Slk~~ 833 (1152)
|+++.
T Consensus 172 Str~~ 176 (308)
T 2nn6_H 172 HTRSL 176 (308)
T ss_dssp ECCSS
T ss_pred EecCc
Confidence 88753
No 83
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0017 Score=82.99 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=58.7
Q ss_pred CceEEEEEEEEecCeEEEEEcC-CeEEEEeccccC--CCC-----------CCC----CCCCccCCCEEEEEEEEEecC-
Q 001115 586 RLITHGWITKIEKHGCFVRFYN-GVQGFAPRSELG--LDP-----------GCE----PSSMYHVGQVVKCRIMSSIPA- 646 (1152)
Q Consensus 586 G~~~~G~V~~i~~~G~~V~~~~-gv~Gflp~sel~--~~~-----------~~~----~~~~f~vGq~v~vrV~~vd~~- 646 (1152)
|+.+.|+|+++.++|+||.+.+ |++|++|.++|. .+. ..+ ....|++||.|+|+|..+|..
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 8999999999999999999987 899999999996 221 012 346799999999999999874
Q ss_pred --CCEEEEEEe
Q 001115 647 --SRRINLSFM 655 (1152)
Q Consensus 647 --~~ri~lS~k 655 (1152)
++||.||+|
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 378999885
No 84
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=96.45 E-value=0.0068 Score=61.61 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=58.3
Q ss_pred cCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEeCCccccccccCCCCccccCCEEEEEEEEE-eCCeEEEee
Q 001115 496 VKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTH 565 (1152)
Q Consensus 496 l~~G~iv~g~V~~v~~~G~~V~i~~-~v~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v-~~~~i~LS~ 565 (1152)
-.+|++|-|.|+.+..++++|+|+. ..+|++|.+.+.. ...+....|++||-|.|||..+ ....+.||.
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g-~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Ltc 75 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPN-ASKKNRPTLQVGDLVYARVCTAEKELEAEIEC 75 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTT-CCSSSCCCCCTTCEEEEEEEECCTTSCCEEES
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCc-hhhhhhccCCCCCEEEEEEEEecCCCceEEEe
Confidence 4689999999999999999999998 7999999987752 2345566789999999999998 556788883
No 85
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.38 E-value=0.0028 Score=70.22 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=58.8
Q ss_pred ccCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEeCCccccc----ccc------CCCCccccCCEEEEEEEEE-eCCeEEE
Q 001115 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF----EIV------KPGKKFKVGAELVFRVLGV-KSKRITV 563 (1152)
Q Consensus 495 ~l~~G~iv~g~V~~v~~~G~~V~i~~~v~g~vp~~hls~~----~~~------~~~~~~kvG~~V~~rVl~v-~~~~i~L 563 (1152)
-.++|++|.|+|+.+.+++++|+|+...+|+++.+++++. +.. +....|++||.|.|||+.+ +...+.|
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i~L 171 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSL 171 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCEEE
Confidence 4678999999999999999999999778999998887642 111 1225689999999999999 6678999
Q ss_pred eech
Q 001115 564 THKK 567 (1152)
Q Consensus 564 S~K~ 567 (1152)
|.|.
T Consensus 172 Str~ 175 (308)
T 2nn6_H 172 HTRS 175 (308)
T ss_dssp ECCS
T ss_pred EecC
Confidence 8874
No 86
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=96.36 E-value=0.0091 Score=60.69 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=59.6
Q ss_pred CCCCEEEEEEEEEecceEEEEECC-CeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEee
Q 001115 760 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1152)
Q Consensus 760 ~~G~~v~G~V~~i~~~GvfV~~~~-~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSlk 831 (1152)
++|+.|.|.|..+..++++|++.+ ...|++|.+.+.. ..++....|.+|+.|.|+|.+++.+ ..+.|++-
T Consensus 6 ~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g-~~k~~r~~l~~GDlV~ArV~~~~~~-~~~~Ltc~ 76 (175)
T 2ja9_A 6 SVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPN-ASKKNRPTLQVGDLVYARVCTAEKE-LEAEIECF 76 (175)
T ss_dssp CTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTT-CCSSSCCCCCTTCEEEEEEEECCTT-SCCEEESS
T ss_pred CCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCc-hhhhhhccCCCCCEEEEEEEEecCC-CceEEEec
Confidence 579999999999999999999988 7999999998863 3345667899999999999999854 57788843
No 87
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.55 E-value=0.076 Score=58.16 Aligned_cols=70 Identities=7% Similarity=-0.046 Sum_probs=58.6
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEe
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k 655 (1152)
++|+++.|.|+.+....+.|++.....|+||.+++. .........|++||.|.|+|++++. +..+.||+-
T Consensus 126 ~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc~ 195 (289)
T 2nn6_G 126 VKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCI 195 (289)
T ss_dssp CSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECS
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEec
Confidence 479999999999999999999988888999998764 1234566789999999999999985 456788873
No 88
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=93.73 E-value=0.1 Score=57.17 Aligned_cols=69 Identities=16% Similarity=0.019 Sum_probs=58.5
Q ss_pred cCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEeCCccccccccCCCCccccCCEEEEEEEEE-eCCeEEEee
Q 001115 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTH 565 (1152)
Q Consensus 496 l~~G~iv~g~V~~v~~~G~~V~i~~~v~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v-~~~~i~LS~ 565 (1152)
.++|++|-|+|+.+....+.|+|.....|++|...+.. ...+....|++||-|.|||+.+ ......||.
T Consensus 125 P~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~G-atk~~r~~f~~GDlV~ArV~s~~~~~~~eLsc 194 (289)
T 2nn6_G 125 PVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEG-ATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC 194 (289)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSC-CSSCSSSSSCTTCEEEEEEEECCTTSCCEEEC
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCc-chhhhhhhcCCCCEEEEEEEEcCCCCceEEEe
Confidence 47899999999999999999999988899999887652 2345566899999999999998 556788876
No 89
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=86.51 E-value=1.8 Score=45.28 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=46.4
Q ss_pred cCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEeCCccccccccCCC------------CccccCCEEEEEEEEE
Q 001115 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG------------KKFKVGAELVFRVLGV 556 (1152)
Q Consensus 496 l~~G~iv~g~V~~v~~~G~~V~i~~~v~g~vp~~hls~~~~~~~~------------~~~kvG~~V~~rVl~v 556 (1152)
-.+|+++.|+|..+++.|+.+-+.+-++.+||..+|.+...-++. ..-++|++|++||..+
T Consensus 127 Pf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~ 199 (214)
T 2rf4_A 127 PQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNV 199 (214)
T ss_dssp CCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEE
T ss_pred cCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEE
Confidence 357999999999999999888777789999999988542111111 1123799999999998
No 90
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=85.83 E-value=1.9 Score=45.16 Aligned_cols=65 Identities=6% Similarity=-0.026 Sum_probs=46.3
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccC--CCCCCCC----------CCCccCCCEEEEEEEEEecCCC
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG--LDPGCEP----------SSMYHVGQVVKCRIMSSIPASR 648 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~--~~~~~~~----------~~~f~vGq~v~vrV~~vd~~~~ 648 (1152)
+.|+++.|+|..+.+.|+.+-+.+-...|+|...|. |.+..+. .+.-++|+.|++||.+++...+
T Consensus 128 f~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 128 QVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp CTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSS
T ss_pred CCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCC
Confidence 369999999999999887776677788999999883 2222111 0112368888888888886544
No 91
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=78.27 E-value=4.3 Score=37.27 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=46.5
Q ss_pred CCCEEEEEEEEEeCCeEEEEeCCCeEEEEeCCccccccc-----cC-CCCccccCCEEEEE
Q 001115 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI-----VK-PGKKFKVGAELVFR 552 (1152)
Q Consensus 498 ~G~iv~g~V~~v~~~G~~V~i~~~v~g~vp~~hls~~~~-----~~-~~~~~kvG~~V~~r 552 (1152)
.|..+.+.|+++.+.++.|.+.++-.+.|+...|.|.+. .. +.+.+++|+.|.++
T Consensus 33 ~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 33 SDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 488999999999999999999888899999999998742 22 44568999999887
No 92
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=77.03 E-value=3.3 Score=39.42 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=56.0
Q ss_pred CCceEEEEEEEEecCeEEEEEcCCeE--EEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeCCCCcc
Q 001115 585 DRLITHGWITKIEKHGCFVRFYNGVQ--GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662 (1152)
Q Consensus 585 ~G~~~~G~V~~i~~~G~~V~~~~gv~--Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~~~~~~ 662 (1152)
.|..+.|+|+.+.+.+++|.|.+... -.+|.+++...+-......|.+||.|+|.--.=|
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d------------------ 75 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANE------------------ 75 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC--------------------
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCC------------------
Confidence 48999999999999999999977543 5788888865433233356899999998432111
Q ss_pred ccccccCCCEEEEEEEEEeCCcEEEEE
Q 001115 663 EDDLVKLGSLVSGVVDVVTPNAVVVYV 689 (1152)
Q Consensus 663 ~~~~l~vG~iv~g~V~~v~~~g~~V~l 689 (1152)
..+-.--.|+|+.+..+-.+|+.
T Consensus 76 ----~ep~gWw~a~I~~~kg~f~~V~y 98 (128)
T 3h8z_A 76 ----QEPCGWWLARVRMMKGDFYVIEY 98 (128)
T ss_dssp -----CCCEEEEEEEEEEETTEEEEEE
T ss_pred ----CCcCccEEEEEEEeeCCEEEEEE
Confidence 11122446788888877777775
No 93
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=76.93 E-value=18 Score=34.27 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=62.3
Q ss_pred CCCEEEEEEEEEeCCeEEEEeCCCe--EEEEeCCccccccccCCCCccccCCEEEEEEEEEeCCeEEEeechhhhhhhhh
Q 001115 498 PGMVVKGKVIAVDSFGAIVQFPGGV--KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA 575 (1152)
Q Consensus 498 ~G~iv~g~V~~v~~~G~~V~i~~~v--~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v~~~~i~LS~K~~l~~~~~~ 575 (1152)
.|.-.+|+|+.+.+.+++|.+.+.. .-.+|..|+.-.+.......|.+||+|++.--.
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~-------------------- 73 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRA-------------------- 73 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC--------------------
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecC--------------------
Confidence 4999999999999999999998644 357887766533222223678999999985310
Q ss_pred HhhhhhhccCCceEEEEEEEEecCeEEEEEcC---CeEEEEeccccC
Q 001115 576 ILSSYAEATDRLITHGWITKIEKHGCFVRFYN---GVQGFAPRSELG 619 (1152)
Q Consensus 576 ~~~~~~~~~~G~~~~G~V~~i~~~G~~V~~~~---gv~Gflp~sel~ 619 (1152)
.+..+-.-..|+|+.+...-++|++.+ ..+-+++..+|.
T Consensus 74 -----~d~ep~gWw~a~I~~~kg~f~~V~y~~~~~~~~EiV~~~rlR 115 (128)
T 3h8z_A 74 -----NEQEPCGWWLARVRMMKGDFYVIEYAACDATYNEIVTLERLR 115 (128)
T ss_dssp --------CCCEEEEEEEEEEETTEEEEEETTC----CEEECGGGEE
T ss_pred -----CCCCcCccEEEEEEEeeCCEEEEEEcCCCCCcceEEehhheE
Confidence 011223356799999987667777533 344566666653
No 94
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=73.12 E-value=7.6 Score=35.59 Aligned_cols=55 Identities=9% Similarity=-0.071 Sum_probs=46.6
Q ss_pred CCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCC--C---CC-CCCCccCCCEEEEE
Q 001115 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP--G---CE-PSSMYHVGQVVKCR 639 (1152)
Q Consensus 585 ~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~--~---~~-~~~~f~vGq~v~vr 639 (1152)
.|....+.|+++.+.++-|.+.+|-.+.|+...|.|-. . .. +++.+++|+.|.++
T Consensus 33 ~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 33 SDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 48899999999999999999988888899999998763 1 23 55679999999998
No 95
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=70.93 E-value=5.2 Score=47.02 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=44.6
Q ss_pred cCCceEEEEEEEEecCeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEE
Q 001115 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~ 654 (1152)
..|+.+.|.|+.+. +..|+++.+++..+. .....|++||.|+|+|.++|+.++++.+..
T Consensus 402 ~~g~~f~g~vv~l~----------~~~glV~v~~l~~d~--~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVVVDRR----------GAQATLLIPDLAFDV--QVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEEEEEE----------TTEEEEEEGGGTEEE--EEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEEEe----------CcEEEEEECCCCeEE--ecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 46999998875533 346788888775431 122469999999999999999999998776
No 96
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=67.34 E-value=8.2 Score=45.30 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=44.6
Q ss_pred CCCCEEEEEEEEEecceEEEEECCCeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEe
Q 001115 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1152)
Q Consensus 760 ~~G~~v~G~V~~i~~~GvfV~~~~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LSl 830 (1152)
+.|+.+.|.|..+. +..|+++.+++.... .....|++||.|.|+|.++|..++++.+..
T Consensus 402 ~~g~~f~g~vv~l~----------~~~glV~v~~l~~d~--~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVVVDRR----------GAQATLLIPDLAFDV--QVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEEEEEE----------TTEEEEEEGGGTEEE--EEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEEEe----------CcEEEEEECCCCeEE--ecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 57888988875543 336788888776432 223579999999999999999999987764
No 97
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=62.20 E-value=37 Score=32.15 Aligned_cols=117 Identities=23% Similarity=0.259 Sum_probs=62.1
Q ss_pred CEEEEEEEEEecc----eEEEEcCCCcEEEEeccccCChhhcccccccccCCCCCccCCCCEEEEEEEEEecCCccccee
Q 001115 135 MKLWGVVAEVNEK----DLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKR 210 (1152)
Q Consensus 135 ~~vlG~V~~i~~~----~l~vslp~~l~G~v~~~~is~~~~~~~~~~~~~~~l~~~f~vGq~v~~~V~~~~~~~~~~~~~ 210 (1152)
-++-|.|.++... .+.+.++++..=...+|.-|-. . .-+.+|+.+.+.|.. .
T Consensus 10 N~l~g~V~~~~~~~~~~~v~l~~~~~~~l~~~it~~s~~---~-----------~~l~~g~~v~~~irp---~------- 65 (145)
T 1h9m_A 10 NVFKGTVSALKEGAVNAEVDILLGGGDKLAAVVTLESAR---S-----------LQLAAGKEVVAVVKA---P------- 65 (145)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEESSSCEEEEEEEHHHHH---H-----------TTCCTTCEEEEEECG---G-------
T ss_pred eEEEEEEEEEEcCCceEEEEEEECCCCEEEEEeCHHHHH---h-----------cCCCCCCEEEEEEcc---c-------
Confidence 3678999998876 5667775543323333221100 0 014567777666532 0
Q ss_pred EEEEecchHHHhcCCCccccCCCCEEEEEEEEEecCe----EEEEe-CCCceeeeecCCCCCCCCCCcCCCCcEEEEEEE
Q 001115 211 KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG----YILHF-GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285 (1152)
Q Consensus 211 ~i~LS~~p~~vn~~l~~~~l~~g~~l~~~V~svedhG----~ivd~-Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~V~ 285 (1152)
.|.|+..+. .........+.|.|.+++..| |.+++ |-..+...++...+. ...+.+|+.+.+.+.
T Consensus 66 ~v~l~~~~~-------~~~~s~~N~l~g~V~~i~~~G~~~~v~v~~~~g~~l~a~it~~~~~---~l~l~~G~~V~~~~k 135 (145)
T 1h9m_A 66 WVLLMTDSS-------GYRLSARNILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVA---ELGLKPGASASAVIK 135 (145)
T ss_dssp GCEEESCCT-------TCCCSCSEEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHH---HTTCCTTCEEEEEEC
T ss_pred eEEEeccCC-------CCCccceEEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEEcHHHHh---hcCCCCCCEEEEEEc
Confidence 234433210 001112246999999999887 44555 212244555543221 125788999888763
No 98
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=60.50 E-value=16 Score=32.00 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=41.7
Q ss_pred hccCCceEEEEEEEEecCeEEEEEcC--CeEEEEecc-ccCCCCCCCCCCCccCCCEEEEEEEEEecC
Q 001115 582 EATDRLITHGWITKIEKHGCFVRFYN--GVQGFAPRS-ELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646 (1152)
Q Consensus 582 ~~~~G~~~~G~V~~i~~~G~~V~~~~--gv~Gflp~s-el~~~~~~~~~~~f~vGq~v~vrV~~vd~~ 646 (1152)
++.+|+++.|.|. +.++-++|.+.+ |++|++-.. ++..+...+.++. -+|.+|+++|+.+|.-
T Consensus 29 ~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkk-LVGKtIkVqVIRvD~l 94 (102)
T 1jjg_A 29 DLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKER-LVGRVIKTRVVRADGL 94 (102)
T ss_dssp CCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHH-HTTCEEEEEEEEECSS
T ss_pred ccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHH-hcCceEEEEEEEeccE
Confidence 5568999999876 456677888754 789887532 1111112222221 3999999999999864
No 99
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=60.16 E-value=43 Score=27.77 Aligned_cols=51 Identities=29% Similarity=0.563 Sum_probs=40.6
Q ss_pred CCCCccccCCEEEEEEEEEeCCeEEEeechhhhhhhhhHhhhhhhccCCceEEEEEEEEec--CeEEEEEcCCeEEEEec
Q 001115 538 KPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK--HGCFVRFYNGVQGFAPR 615 (1152)
Q Consensus 538 ~~~~~~kvG~~V~~rVl~v~~~~i~LS~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~--~G~~V~~~~gv~Gflp~ 615 (1152)
.+..+|++|+.|.|+ | .-|..+.|+|++|.+ .-|+|+|+++..-++.-
T Consensus 9 ~~~~~f~vGddVLA~------------------------w------tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~ 58 (66)
T 2eqj_A 9 KPACKFEEGQDVLAR------------------------W------SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLW 58 (66)
T ss_dssp CCCCCSCTTCEEEEE------------------------C------TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred cccccccCCCEEEEE------------------------E------ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEe
Confidence 445578999988765 1 248889999999995 56899999999988876
Q ss_pred ccc
Q 001115 616 SEL 618 (1152)
Q Consensus 616 sel 618 (1152)
.+|
T Consensus 59 kdi 61 (66)
T 2eqj_A 59 KDI 61 (66)
T ss_dssp TTE
T ss_pred ecc
Confidence 665
No 100
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=58.33 E-value=47 Score=29.15 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=42.9
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEEC--CCeEEEEeccCCCCccccCcccccc---CCCEEEEEEEEEeC
Q 001115 755 DASHIHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYY---VGQSVRSNILDVNS 821 (1152)
Q Consensus 755 ~~~~~~~G~~v~G~V~~i~~~GvfV~~~--~~l~Glv~~s~ls~~~~~~~~~~f~---~Gq~V~v~Vl~vd~ 821 (1152)
+.-++.+|++..|.|. +.++-++|.+. +|+++++- .+++- ..+--+.++ +|.+|+++|+++|.
T Consensus 26 ~~~~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~-dYvnv--~~dr~~klkkkLVGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 26 SAMDLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILL-DYLNY--RQDTLDRLKERLVGRVIKTRVVRADG 93 (102)
T ss_dssp CCCCCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEEC-TTCCS--SCCCCCHHHHHHTTCEEEEEEEEECS
T ss_pred eccccCCCceEeeEEE-EeCCEEEEEecCCCCceeeee-hhhhh--hHHHHHHHHHHhcCceEEEEEEEecc
Confidence 4457889999999654 66777888874 47999875 33332 112122222 79999999999984
No 101
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=52.29 E-value=1.1e+02 Score=31.82 Aligned_cols=134 Identities=19% Similarity=0.153 Sum_probs=82.6
Q ss_pred ccccCCEEEEEEEEE-eCCeEEEeechh-----hhhhhhhHhhh-hh-------hcc-----------CCceEEEEEEEE
Q 001115 542 KFKVGAELVFRVLGV-KSKRITVTHKKT-----LVKSKLAILSS-YA-------EAT-----------DRLITHGWITKI 596 (1152)
Q Consensus 542 ~~kvG~~V~~rVl~v-~~~~i~LS~K~~-----l~~~~~~~~~~-~~-------~~~-----------~G~~~~G~V~~i 596 (1152)
.+.+|+.+.+.|..+ ..+.+++-+... |.... .-+.. +. ..+ .|..+.|.|.++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~-~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~WyRa~V~~~ 90 (226)
T 4b9x_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLN-QSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEI 90 (226)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHH-HHHHHHTSSSCC--CCCCTTCEEEEEETTTTEEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEEcCCchHHHHHHHH-HHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEE
Confidence 577999999999999 788888865321 11000 00110 00 011 256678889998
Q ss_pred ecCe-EEEEEc-CCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeCCCCcc-----ccccccC
Q 001115 597 EKHG-CFVRFY-NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-----EDDLVKL 669 (1152)
Q Consensus 597 ~~~G-~~V~~~-~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~~~~~~-----~~~~l~v 669 (1152)
.+.+ +-|.|- -|-...+|.++|..-+ +.-.--+.|-++|+.-.+-|.++ .|. ...++-.
T Consensus 91 ~~~~~~~V~~vDyGn~~~v~~~~l~~l~---~~f~~lP~qA~~c~L~~v~p~~~-----------~w~~ea~~~f~~l~~ 156 (226)
T 4b9x_A 91 LPSGNVKVHFVDYGNVEEVTTDQLQAIL---PQFLLLPFQGMQCWLVDIQPPNK-----------HWTKEATARFQACVV 156 (226)
T ss_dssp CSSSEEEEECTTTCCEEEEEGGGEECCC---GGGSSSCBCCEEEEESSEECSSS-----------SCCHHHHHHHHHHHT
T ss_pred CCCCeEEEEEEecCCEEEEEHHHhccCh---HHHcccccceEEEEEecEECCCC-----------CCCHHHHHHHHHHHC
Confidence 7655 444442 2667789988884211 11011356888999877765321 222 1234567
Q ss_pred CCEEEEEEEEEeCCcEEEEEe
Q 001115 670 GSLVSGVVDVVTPNAVVVYVI 690 (1152)
Q Consensus 670 G~iv~g~V~~v~~~g~~V~l~ 690 (1152)
|..+.++|..+.++++.|.|.
T Consensus 157 ~k~l~~~V~~~~~~~~~V~L~ 177 (226)
T 4b9x_A 157 GLKLQARVVEITANGVGVELT 177 (226)
T ss_dssp TCCEEEEEEEECSSCEEEEEE
T ss_pred CCeEEEEEEEEeCCeEEEEEE
Confidence 889999999999999888873
No 102
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=44.97 E-value=31 Score=30.46 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=38.4
Q ss_pred cCCceEEEEEEEEec-CeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEE
Q 001115 584 TDRLITHGWITKIEK-HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~-~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~ 641 (1152)
..++...|+|+...+ ||++-.-.++-+-|+|.|.+... -..+..||.|.+.+.
T Consensus 14 ~~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 14 SNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGD-----VDSLELGDMVEYSLS 67 (88)
T ss_dssp SSCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSC-----TTTCCTTCEEEECCC
T ss_pred CCCCceeEEEEEEECCccEEecCCCCceEEEEEhhhccc-----cCcCCCCCEEEEEEE
Confidence 357888999999985 44444333358899999998643 235789999998774
No 103
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=42.36 E-value=44 Score=26.88 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=30.4
Q ss_pred CCceEEEEEEEEecC--eEEEEEcCCeEEEEeccccC
Q 001115 585 DRLITHGWITKIEKH--GCFVRFYNGVQGFAPRSELG 619 (1152)
Q Consensus 585 ~G~~~~G~V~~i~~~--G~~V~~~~gv~Gflp~sel~ 619 (1152)
.|..+.|+|..+.+. -|+|.|+++..-++.-.+|.
T Consensus 16 DG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~ 52 (58)
T 4hcz_A 16 DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 52 (58)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEE
T ss_pred CCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHcc
Confidence 488899999999865 69999999999999887774
No 104
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=39.95 E-value=77 Score=26.88 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=34.3
Q ss_pred EEEEEEEEec---CeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEE
Q 001115 589 THGWITKIEK---HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1152)
Q Consensus 589 ~~G~V~~i~~---~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~ 642 (1152)
..|+|+.... ||++..-.++-. |+|.|.+.... .+..||.|.+.+..
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD------LIKKDAAVTFEPTT 52 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG------GCCTTCEEEEEEEE
T ss_pred cceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC------CCCCCCEEEEEEEe
Confidence 5799998863 566554444566 99999996331 57899999999864
No 105
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=39.42 E-value=2.2e+02 Score=28.80 Aligned_cols=133 Identities=19% Similarity=0.164 Sum_probs=81.0
Q ss_pred ccccCCEEEEEEEEE-eCCeEEEeechh-----hhhhhhhHhhh-hh-------hcc-----------CCceEEEEEEEE
Q 001115 542 KFKVGAELVFRVLGV-KSKRITVTHKKT-----LVKSKLAILSS-YA-------EAT-----------DRLITHGWITKI 596 (1152)
Q Consensus 542 ~~kvG~~V~~rVl~v-~~~~i~LS~K~~-----l~~~~~~~~~~-~~-------~~~-----------~G~~~~G~V~~i 596 (1152)
.+.+|+.+++.|..+ ..+.+++-+... +.... ..+.. +. ..+ .|..+.|.|.++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~l~~L~-~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~wyRa~V~~~ 90 (201)
T 4b9w_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLN-QSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEI 90 (201)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHH-HHHHHHHHSSSCCCCCCCTTCEEEEEETTTTEEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEE
Confidence 578999999999999 788888865321 11000 00111 00 011 256678889998
Q ss_pred ecCe-EEEEEcC-CeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEEecCCCEEEEEEeeCCCCcc-----ccccccC
Q 001115 597 EKHG-CFVRFYN-GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-----EDDLVKL 669 (1152)
Q Consensus 597 ~~~G-~~V~~~~-gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~vd~~~~ri~lS~k~~~~~~~-----~~~~l~v 669 (1152)
.+.+ +-|.|-+ |-...+|.++|..-+ +.-.--+.|-++|+.-.+.|.++ .|. ...++-.
T Consensus 91 ~~~~~~~V~~vDyG~~~~v~~~~l~~l~---~~f~~lP~qA~~c~L~~v~p~~~-----------~w~~ea~~~f~~l~~ 156 (201)
T 4b9w_A 91 LPSGNVKVHFVDYGNVEEVTTDQLQAIL---PQFLLLPFQGMQCWLVDIQPPNK-----------HWTKEATARFQACVV 156 (201)
T ss_dssp CTTSCEEEEETTTCCEEEECGGGEEECC---GGGGSSCBCCEEEEESSEECSSS-----------SCCHHHHHHHHHHHT
T ss_pred CCCCeEEEEEEccCCEEEEEHHHhccCh---HhHcccchhhEEEEEcCEEcCCC-----------CCCHHHHHHHHHHHC
Confidence 7654 4444432 667788988884211 00011356888998877765321 121 1234557
Q ss_pred CCEEEEEEEEEeCCcEEEEE
Q 001115 670 GSLVSGVVDVVTPNAVVVYV 689 (1152)
Q Consensus 670 G~iv~g~V~~v~~~g~~V~l 689 (1152)
|..+.++|....++++.|.|
T Consensus 157 ~k~l~~~V~~~~~~~~~V~L 176 (201)
T 4b9w_A 157 GLKLQARVVEITANGVGVEL 176 (201)
T ss_dssp TCCEEEEEEEEETTEEEEEE
T ss_pred CCEEEEEEEEEeCCEEEEEE
Confidence 88899999999999888877
No 106
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=37.68 E-value=89 Score=27.53 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=37.4
Q ss_pred CceEEEEEEEEec-CeEEEEEcC-CeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEE
Q 001115 586 RLITHGWITKIEK-HGCFVRFYN-GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1152)
Q Consensus 586 G~~~~G~V~~i~~-~G~~V~~~~-gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~ 642 (1152)
.....|+|+...+ || |+.-.+ +-+-|+|.+.+... ...+..||.|.+.+..
T Consensus 16 ~~~~~G~Vkwf~KGfG-FI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~ 68 (89)
T 1wfq_A 16 ALRETGVIEKLLTSYG-FIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSS 68 (89)
T ss_dssp CCEEEEEEEEECSSEE-EEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEE
T ss_pred ccccceEEEEEeCCee-EEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEE
Confidence 4667899998863 44 455444 48899999998642 2357899999999865
No 107
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=37.48 E-value=1.4e+02 Score=25.57 Aligned_cols=56 Identities=11% Similarity=0.037 Sum_probs=37.8
Q ss_pred ceEEEEEEEEec---CeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEE
Q 001115 587 LITHGWITKIEK---HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1152)
Q Consensus 587 ~~~~G~V~~i~~---~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~ 642 (1152)
....|+|+.... ||++..-.++-.-|+|.|.+.......--..+..||.|.+.+..
T Consensus 7 ~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred cccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 346799999873 56665544468899999999532000011347899999998864
No 108
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=36.94 E-value=51 Score=27.28 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=11.0
Q ss_pred CCCCCccCCCEEEEE
Q 001115 625 EPSSMYHVGQVVKCR 639 (1152)
Q Consensus 625 ~~~~~f~vGq~v~vr 639 (1152)
.+...|++||.|.|+
T Consensus 9 ~~~~~f~vGddVLA~ 23 (66)
T 2eqj_A 9 KPACKFEEGQDVLAR 23 (66)
T ss_dssp CCCCCSCTTCEEEEE
T ss_pred cccccccCCCEEEEE
Confidence 344469999998776
No 109
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=35.42 E-value=1.2e+02 Score=27.38 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=37.6
Q ss_pred CCCCCCCE--EEEEEEEEecceEEEEcCCCcEEEEeccccCChhhcccccccccCCCCCccCCCCEEEEE
Q 001115 129 KNISAGMK--LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 196 (1152)
Q Consensus 129 k~l~~G~~--vlG~V~~i~~~~l~vslp~~l~G~v~~~~is~~~~~~~~~~~~~~~l~~~f~vGq~v~~~ 196 (1152)
..+.+|++ .||||++-+.--+.+. ..+.+..|.++-+=+. + ..++|+||-+.
T Consensus 16 p~~~~G~KVRFLGCV~sY~tg~L~Le-~~~~~v~VDV~lvL~~-------------l--~~~vGeWvNVv 69 (105)
T 3kf6_B 16 NDCKDGQKLRFLGCVQSYKNGILRLI-DGSSSVTCDVTVVLPD-------------V--SIQKHEWLNIV 69 (105)
T ss_dssp GGSCTTCEEEEEEEEEEEETTEEEEE-ETTEEEEEECTTSCCS-------------S--CCCTTCEEEEE
T ss_pred cCCCCCCEEEEEEEeeeeccEEEEEc-cCCcEEEEEHHHhhch-------------h--eeecccEEEEE
Confidence 36778988 6999999995566666 5566667766665433 3 57899999865
No 110
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=35.26 E-value=1.3e+02 Score=26.32 Aligned_cols=47 Identities=11% Similarity=-0.050 Sum_probs=35.3
Q ss_pred EEEEEEEEEecCCCEEEEEEeeCCC-------------CccccccccCCCEEEEEEEEEe
Q 001115 635 VVKCRIMSSIPASRRINLSFMMKPT-------------RVSEDDLVKLGSLVSGVVDVVT 681 (1152)
Q Consensus 635 ~v~vrV~~vd~~~~ri~lS~k~~~~-------------~~~~~~~l~vG~iv~g~V~~v~ 681 (1152)
.+...|.++|++.+++.|+..+-.. .......+++|+.|...+....
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~ 76 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG 76 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEEEEEeC
Confidence 5789999999999999998755321 1123457899999999887553
No 111
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=35.25 E-value=1.4e+02 Score=25.65 Aligned_cols=47 Identities=11% Similarity=-0.050 Sum_probs=35.1
Q ss_pred EEEEEEEEEecCCCEEEEEEeeCCC-------------CccccccccCCCEEEEEEEEEe
Q 001115 635 VVKCRIMSSIPASRRINLSFMMKPT-------------RVSEDDLVKLGSLVSGVVDVVT 681 (1152)
Q Consensus 635 ~v~vrV~~vd~~~~ri~lS~k~~~~-------------~~~~~~~l~vG~iv~g~V~~v~ 681 (1152)
.....|.++|++.+++.|+..+-.. .......+++|+.|...+....
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~ 68 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG 68 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEEEEEeC
Confidence 4788999999999999998765321 1123457899999998886543
No 112
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=32.96 E-value=4.2e+02 Score=27.18 Aligned_cols=138 Identities=11% Similarity=0.049 Sum_probs=81.2
Q ss_pred cCCCCEEEEEEEEEecCCCeEEEEcccc---ccc-----------cccccccccCCC-----------CEEEEEEEEEeC
Q 001115 457 YKEGSCVRVRILGFRHLEGLATGILKAS---AFE-----------GLVFTHSDVKPG-----------MVVKGKVIAVDS 511 (1152)
Q Consensus 457 ~~vG~~v~~rVi~~~~~~~~~~lS~k~~---~~~-----------~~~~~~~~l~~G-----------~iv~g~V~~v~~ 511 (1152)
+.+|+.+.+.|..+...+..+.--.... .++ .........++| .-..|.|.++.+
T Consensus 13 l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~WyRa~V~~~~~ 92 (226)
T 4b9x_A 13 FTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEILP 92 (226)
T ss_dssp CCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC--CCCCTTCEEEEEETTTTEEEEEEEEEECS
T ss_pred cCCCCEEEEEEEEEeCCCEEEEEEcCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEECC
Confidence 8899999999999977555443222111 011 000111123344 456788888876
Q ss_pred Ce-EEEEeCC-CeEEEEeCCccccccccCCCCccccCCEEEEEEEEEeCCeEEEeechhhhhhhhhHhhhhhhccCCceE
Q 001115 512 FG-AIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589 (1152)
Q Consensus 512 ~G-~~V~i~~-~v~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v~~~~i~LS~K~~l~~~~~~~~~~~~~~~~G~~~ 589 (1152)
.+ +.|.+-+ |....||..++...+ ++-.--+.+-++|++-.+... -..........|.+...|..+
T Consensus 93 ~~~~~V~~vDyGn~~~v~~~~l~~l~---~~f~~lP~qA~~c~L~~v~p~---------~~~w~~ea~~~f~~l~~~k~l 160 (226)
T 4b9x_A 93 SGNVKVHFVDYGNVEEVTTDQLQAIL---PQFLLLPFQGMQCWLVDIQPP---------NKHWTKEATARFQACVVGLKL 160 (226)
T ss_dssp SSEEEEECTTTCCEEEEEGGGEECCC---GGGSSSCBCCEEEEESSEECS---------SSSCCHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEEEecCCEEEEEHHHhccCh---HHHcccccceEEEEEecEECC---------CCCCCHHHHHHHHHHHCCCeE
Confidence 54 5565543 777889887765421 111113678888988665210 000001223345566678899
Q ss_pred EEEEEEEecCeEEEEEc
Q 001115 590 HGWITKIEKHGCFVRFY 606 (1152)
Q Consensus 590 ~G~V~~i~~~G~~V~~~ 606 (1152)
.+.|..+.+.++.|+++
T Consensus 161 ~~~V~~~~~~~~~V~L~ 177 (226)
T 4b9x_A 161 QARVVEITANGVGVELT 177 (226)
T ss_dssp EEEEEEECSSCEEEEEE
T ss_pred EEEEEEEeCCeEEEEEE
Confidence 99999999999999886
No 113
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=29.93 E-value=1.6e+02 Score=24.58 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=36.0
Q ss_pred eEEEEEEEEec---CeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEE
Q 001115 588 ITHGWITKIEK---HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1152)
Q Consensus 588 ~~~G~V~~i~~---~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~ 642 (1152)
...|+|....+ ||++..-.++-+-|+|.|.+.... -..+..||.|.+.+..
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~ 58 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITN 58 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSS----CCCCCTTCEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHccccc----CcCCCCCCEEEEEEEE
Confidence 45799998863 565554434477899999996331 1246899999998875
No 114
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=29.77 E-value=4.7e+02 Score=26.77 Aligned_cols=93 Identities=24% Similarity=0.320 Sum_probs=62.0
Q ss_pred CCCEEEEEEEEEeC--Ce--EEEEeCCCeEEEEeCCccccccccCCCCccccCCEEEEEEEEEeCCeEEEeechhhhhhh
Q 001115 498 PGMVVKGKVIAVDS--FG--AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSK 573 (1152)
Q Consensus 498 ~G~iv~g~V~~v~~--~G--~~V~i~~~v~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v~~~~i~LS~K~~l~~~~ 573 (1152)
.+.-..|+|++|.+ .| ..|++.++-+-+++..|++.. ...+...+.+|..|-|+-- +.++
T Consensus 21 ~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~ivs~~hiA~~-~~p~~~~l~vG~RVVA~~~--~~~~------------- 84 (213)
T 3dlm_A 21 TKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYD-YHPPADKLYVGSRVVAKYK--DGNQ------------- 84 (213)
T ss_dssp TSBEEEEEEEEEEEETTEEEEEEEESSSCEEEECGGGEEES-SCCCGGGCCTTCEEEEEEE--CSSC-------------
T ss_pred CCcEEEEEEEEEEECCCCeEEEEEEcCCCCEEeecceEEEe-cCCCccEEeEEEEEEEEec--CCCC-------------
Confidence 36678899999866 35 467777666789999999862 2233457889977765431 1111
Q ss_pred hhHhhhhhhccCCceEEEEEEEEe----cCeEEEEEcCCeEEEEecccc
Q 001115 574 LAILSSYAEATDRLITHGWITKIE----KHGCFVRFYNGVQGFAPRSEL 618 (1152)
Q Consensus 574 ~~~~~~~~~~~~G~~~~G~V~~i~----~~G~~V~~~~gv~Gflp~sel 618 (1152)
-..+.|.|...- .+=..|-|.+|...++|..++
T Consensus 85 ------------~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~~V 121 (213)
T 3dlm_A 85 ------------VWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSEL 121 (213)
T ss_dssp ------------EEEEEEEEEECCCTTTTSCEEEEETTSCEEEECGGGE
T ss_pred ------------cceeeeEEEECCccCCCceEEEEEeCCCcceecCceE
Confidence 123456665543 345677788999999998886
No 115
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=29.53 E-value=2.3e+02 Score=23.20 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=34.2
Q ss_pred EEEEEEEec-CeE-EEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEE
Q 001115 590 HGWITKIEK-HGC-FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1152)
Q Consensus 590 ~G~V~~i~~-~G~-~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~ 642 (1152)
.|+|+...+ .|. |+.-.+|-+-|+|.|.+.... -..+..||.|.+.+..
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~ 53 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEG----FKTLEEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSS----CCCCCTTCEEEEEEEE
T ss_pred ceEEEEEECCCCeEEEecCCCccEEEEHHHccccC----CCCCCCCCEEEEEEEE
Confidence 689988873 333 445455677899999995321 1246899999998864
No 116
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=27.89 E-value=2.8e+02 Score=23.71 Aligned_cols=68 Identities=4% Similarity=0.012 Sum_probs=41.8
Q ss_pred EEEEEEEEEECCCCEEEEEEcccchhhhhcccchhhhhhhccccccccccCCCCEEEEEEEEEecCEEEEEE
Q 001115 919 VIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 990 (1152)
Q Consensus 919 ~v~a~Vl~vd~~~~~v~LSlk~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~l~V~l 990 (1152)
.+++.|..+|...+.+.|+.-|----.+..+... ... .....++.+++|+.|...+......|....|
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~--F~v--~~~~~l~~lk~Gd~V~F~~~~~~~~~~it~i 76 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMR--FTI--TPQTKMSEIKTGDKVAFNFVQQGNLSLLQDI 76 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEE--EEC--CTTCEECCCCTTCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEE--EEc--cChhhhhcCCCCCEEEEEEEEeCCEEEEEEE
Confidence 4788999999999998888644211111111100 000 1223467899999999888776655666655
No 117
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=27.54 E-value=1.4e+02 Score=25.30 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=37.0
Q ss_pred CEEEEEEEEEec---CeEEEEeCCCceeeeecCCCCCCCCCCcCCCCcEEEEEEEE
Q 001115 234 MVLTAYVKSIED---HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 286 (1152)
Q Consensus 234 ~~l~~~V~sved---hG~ivd~Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~V~~ 286 (1152)
|..+|+|+.--+ .|+|-.-+- +-. |+..+.+.... .|.+|+.|.+.+..
T Consensus 1 M~~~G~Vkwfn~~KGfGFI~~~dg-~~d-FvH~s~i~~~g--~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 1 MAMNGTITTWFKDKGFGFIKDENG-DNR-YFHVIKVANPD--LIKKDAAVTFEPTT 52 (74)
T ss_dssp CCEEEEEEEEETTTTEEEEEESSS-CEE-EEEGGGBSSGG--GCCTTCEEEEEEEE
T ss_pred CCcceEEEEEECCCCeEEEecCCC-Cce-EEEHhHcccCC--CCCCCCEEEEEEEe
Confidence 567899998865 588876531 234 99999886433 89999999999975
No 118
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=27.15 E-value=1.2e+02 Score=26.70 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=38.5
Q ss_pred CCCEEEEEEEEEecceEEEEEC-CCeEEEEeccCCCCccccCccccccCCCEEEEEEE
Q 001115 761 PNSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817 (1152)
Q Consensus 761 ~G~~v~G~V~~i~~~GvfV~~~-~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl 817 (1152)
.++...|+|+....-.=|+.-. ++-+-|+|.+.+... ...+.+||.|...+.
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGD-----VDSLELGDMVEYSLS 67 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSC-----TTTCCTTCEEEECCC
T ss_pred CCCceeEEEEEEECCccEEecCCCCceEEEEEhhhccc-----cCcCCCCCEEEEEEE
Confidence 5778999999996422366644 468999999998643 246889999998754
No 119
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=26.58 E-value=47 Score=26.84 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=31.4
Q ss_pred CEEEEEEEEEecCe----EEEEeCCCceeeeecCCCCCCCCCCcCCCCcEEEEEEE
Q 001115 234 MVLTAYVKSIEDHG----YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285 (1152)
Q Consensus 234 ~~l~~~V~svedhG----~ivd~Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~V~ 285 (1152)
..+.|.|.+++..| +.+++|-..+.+.++...+. ...+.+|+.+.+.|.
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s~~---~l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVA---DLDLVPGDKVTALVK 59 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHHH---HHTCCTTCEEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHHHH---hCCCCCCCEEEEEEe
Confidence 36999999999988 44455311234444433221 126899999998874
No 120
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=26.06 E-value=46 Score=27.18 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=32.1
Q ss_pred CEEEEEEEEEecCe----EEEEeC-CCceeeeecCCCCCCCCCCcCCCCcEEEEEEE
Q 001115 234 MVLTAYVKSIEDHG----YILHFG-LPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285 (1152)
Q Consensus 234 ~~l~~~V~svedhG----~ivd~G-i~~~~gFl~~~~~~~~~~~~l~~G~~~~~~V~ 285 (1152)
..+.|.|.+++..| +.+++| -..+.+.++...+. ...|.+|+.+.+.+.
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~~---~l~L~~G~~V~a~ik 60 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVE---ELGVKEGAELTAVVK 60 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHH---HHTCCTTCEEEEECC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHHH---HCCCCCCCEEEEEEe
Confidence 36999999999988 445553 11245555543321 226899999998764
No 121
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=25.16 E-value=90 Score=27.95 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=35.9
Q ss_pred CceEEEEEEEEecCeE-EEEEcC-CeEEEEeccccCCCCCCCCCCCccCCCEEEEEEE
Q 001115 586 RLITHGWITKIEKHGC-FVRFYN-GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641 (1152)
Q Consensus 586 G~~~~G~V~~i~~~G~-~V~~~~-gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~ 641 (1152)
.....|+|... ..|+ |+.-.+ +-+-|+|.+.+... ...+..||.|.+.+.
T Consensus 16 ~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 56678999888 4343 455444 47899999998643 235789999999984
No 122
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=25.11 E-value=1.7e+02 Score=28.30 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=39.7
Q ss_pred cCCceEEEEEEEEec---CeEEEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEEE
Q 001115 584 TDRLITHGWITKIEK---HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643 (1152)
Q Consensus 584 ~~G~~~~G~V~~i~~---~G~~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~v 643 (1152)
..|....|+|+.... ||++..-.++-+-|+|.+.+... ..+..||.|.+.+..-
T Consensus 58 ~~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 58 SQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp HHSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC
T ss_pred ccCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC------CcCCCCCEEEEEEEec
Confidence 347888999999863 55554433447899999998522 2578999999998753
No 123
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=23.98 E-value=2e+02 Score=24.51 Aligned_cols=60 Identities=15% Similarity=0.084 Sum_probs=39.1
Q ss_pred CEEEEEEEEEeC---CeEEEEeCCCeEEEEeCCccccccccCCCCccccCCEEEEEEEEEeCC
Q 001115 500 MVVKGKVIAVDS---FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559 (1152)
Q Consensus 500 ~iv~g~V~~v~~---~G~~V~i~~~v~g~vp~~hls~~~~~~~~~~~kvG~~V~~rVl~v~~~ 559 (1152)
...+|+|+...+ +|.+..-.++-+-|+|.+.+.......--+.+.+|+.|.+.+-.-.++
T Consensus 7 ~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~~kG 69 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG 69 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSS
T ss_pred cccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEECCCC
Confidence 457899999864 466655555789999887765321001124568999999987543333
No 124
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=23.83 E-value=1.9e+02 Score=24.21 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=34.6
Q ss_pred EEEEEEEEec-CeE-EEEEcCCeEEEEeccccCCCCCCCCCCCccCCCEEEEEEEE
Q 001115 589 THGWITKIEK-HGC-FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1152)
Q Consensus 589 ~~G~V~~i~~-~G~-~V~~~~gv~Gflp~sel~~~~~~~~~~~f~vGq~v~vrV~~ 642 (1152)
..|+|+.... .|+ |+.-.+|-.-|+|.|.+.... -..+..||.|.+.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~ 53 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKG----FRTLNEGDIVTFDVEP 53 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSS----CSSCCTTCEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCCCCcEEEEhhhccccC----CCCCCCCCEEEEEEEE
Confidence 3689988873 333 445456677899999985321 1246899999998864
No 125
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.92 E-value=1.9e+02 Score=23.91 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=29.9
Q ss_pred CCceEEEEEEEEec--CeEEEEEcCCeEEEEeccccC
Q 001115 585 DRLITHGWITKIEK--HGCFVRFYNGVQGFAPRSELG 619 (1152)
Q Consensus 585 ~G~~~~G~V~~i~~--~G~~V~~~~gv~Gflp~sel~ 619 (1152)
.|..+.|+|.++.. .-|+|.|+++..-++.-.+|.
T Consensus 22 DGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~ 58 (68)
T 2e5p_A 22 DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 58 (68)
T ss_dssp TSSEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEE
T ss_pred CCcEEEeEEEEEecCCcEEEEEEccCCeeeeeeeccc
Confidence 48889999999984 459999999999998877774
No 126
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=21.70 E-value=3.8e+02 Score=23.32 Aligned_cols=49 Identities=14% Similarity=-0.025 Sum_probs=36.0
Q ss_pred EEEEEEEEEecCCCeEEEEccccc-cc----------cccccccccCCCCEEEEEEEEEe
Q 001115 462 CVRVRILGFRHLEGLATGILKASA-FE----------GLVFTHSDVKPGMVVKGKVIAVD 510 (1152)
Q Consensus 462 ~v~~rVi~~~~~~~~~~lS~k~~~-~~----------~~~~~~~~l~~G~iv~g~V~~v~ 510 (1152)
.....|.+++...+.++++..+.- +. .....++.+++|+.|.-.+....
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~ 76 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG 76 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEEEEEeC
Confidence 478999999999999999865421 10 11234678999999999887654
No 127
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=21.14 E-value=1.5e+02 Score=25.48 Aligned_cols=62 Identities=16% Similarity=0.100 Sum_probs=42.3
Q ss_pred EEEEEEEEEecce-EEEEECCCeEEEEeccCCCCccccCccccccCCCEEEEEEEEEeCCCCeEEEE
Q 001115 764 VVHGYVCNIIETG-CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1152)
Q Consensus 764 ~v~G~V~~i~~~G-vfV~~~~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl~vd~e~~ri~LS 829 (1152)
.+.|.|....+.| +.|.+.+|..-+++++- .+..+ .-..-+|+.|.+.+...|.+++||..-
T Consensus 15 e~~G~Vik~l~n~~f~V~l~nG~~~~c~i~G---K~Rk~-~I~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELENGHKVLAHISG---KMRQH-YIRILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETTSCEEEEEECH---HHHHT-TCCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEeCc---ceecC-CccCCCCCEEEEEECccCCCcEEEEEE
Confidence 4789999998544 66888888666666542 11111 123678999999887777777777653
No 128
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=20.14 E-value=1.4e+02 Score=26.79 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCEEEEEEEEEecceE-EEEEC-CCeEEEEeccCCCCccccCccccccCCCEEEEEEE
Q 001115 762 NSVVHGYVCNIIETGC-FVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817 (1152)
Q Consensus 762 G~~v~G~V~~i~~~Gv-fV~~~-~~l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~v~Vl 817 (1152)
.....|+|+.. ..|. |+.-. ++-+-|+|.+.+... ...+.+||.|...+.
T Consensus 16 ~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 45678999888 4443 66644 347899999998653 246889999999874
Done!