Query 001116
Match_columns 1152
No_of_seqs 638 out of 4420
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 16:16:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 1.5E-61 3.3E-66 585.6 54.0 501 44-568 7-518 (525)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 7.5E-56 1.6E-60 534.9 44.3 402 58-486 34-448 (559)
3 KOG1965 Sodium/hydrogen exchan 100.0 1.2E-53 2.6E-58 493.0 31.7 434 11-461 9-461 (575)
4 COG0025 NhaP NhaP-type Na+/H+ 100.0 6.1E-50 1.3E-54 471.6 45.4 405 33-463 4-415 (429)
5 KOG1966 Sodium/hydrogen exchan 100.0 3.8E-49 8.3E-54 451.0 10.7 403 59-488 68-482 (670)
6 PRK05326 potassium/proton anti 100.0 7.6E-43 1.7E-47 428.4 39.3 391 33-462 4-399 (562)
7 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 2.8E-41 6E-46 408.0 41.0 393 40-450 19-436 (810)
8 COG3263 NhaP-type Na+/H+ and K 100.0 2E-41 4.3E-46 373.2 31.6 382 37-459 8-394 (574)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 7.5E-34 1.6E-38 334.3 -2.6 370 46-452 7-380 (380)
10 PRK03562 glutathione-regulated 100.0 1.9E-25 4E-30 276.1 41.3 336 35-408 5-346 (621)
11 PRK03659 glutathione-regulated 99.9 4.1E-25 8.9E-30 272.7 40.2 334 34-409 4-344 (601)
12 PLN03159 cation/H(+) antiporte 99.9 3.5E-25 7.7E-30 280.4 39.8 352 32-409 40-403 (832)
13 TIGR00932 2a37 transporter, mo 99.9 3.3E-25 7.1E-30 249.1 30.5 268 45-334 2-272 (273)
14 PRK10669 putative cation:proto 99.9 5.6E-24 1.2E-28 262.0 41.1 338 36-409 7-355 (558)
15 COG0475 KefB Kef-type K+ trans 99.9 1.5E-22 3.3E-27 237.5 39.6 339 35-408 6-351 (397)
16 KOG4505 Na+/H+ antiporter [Ino 99.9 1E-22 2.2E-27 218.4 27.6 391 41-451 20-432 (467)
17 KOG0498 K+-channel ERG and rel 99.8 7E-20 1.5E-24 222.3 19.2 209 647-866 338-550 (727)
18 KOG0499 Cyclic nucleotide-gate 99.8 1.6E-18 3.4E-23 197.3 13.7 213 634-858 433-650 (815)
19 KOG0500 Cyclic nucleotide-gate 99.7 3.7E-17 8.1E-22 184.7 18.4 184 663-859 242-433 (536)
20 PLN03192 Voltage-dependent pot 99.7 1.8E-16 3.9E-21 204.0 24.4 192 664-866 311-503 (823)
21 COG4651 RosB Kef-type K+ trans 99.7 5.5E-15 1.2E-19 157.8 28.6 362 37-447 8-385 (408)
22 KOG0614 cGMP-dependent protein 99.7 4.1E-17 8.8E-22 184.4 10.4 184 734-930 152-338 (732)
23 KOG1650 Predicted K+/H+-antipo 99.7 1.9E-15 4.2E-20 189.3 22.3 388 32-454 20-421 (769)
24 KOG1113 cAMP-dependent protein 99.7 2.1E-16 4.6E-21 172.8 10.3 175 735-921 121-298 (368)
25 PRK09392 ftrB transcriptional 99.6 1.8E-14 3.9E-19 158.6 17.0 149 735-886 6-154 (236)
26 PRK11753 DNA-binding transcrip 99.5 3.5E-13 7.6E-18 145.5 17.2 140 745-886 6-146 (211)
27 cd00038 CAP_ED effector domain 99.5 2.7E-13 5.9E-18 129.6 12.9 114 743-856 1-114 (115)
28 COG0664 Crp cAMP-binding prote 99.4 2.7E-12 5.8E-17 137.8 16.8 145 739-885 3-147 (214)
29 PF00027 cNMP_binding: Cyclic 99.4 1.8E-12 4E-17 119.5 11.2 91 761-851 1-91 (91)
30 PRK10402 DNA-binding transcrip 99.4 3.6E-12 7.8E-17 139.4 15.0 113 754-866 26-138 (226)
31 PRK11161 fumarate/nitrate redu 99.4 4.2E-12 9E-17 139.6 15.6 146 738-886 15-161 (235)
32 smart00100 cNMP Cyclic nucleot 99.4 1E-11 2.3E-16 119.3 13.8 115 743-857 1-117 (120)
33 COG2905 Predicted signal-trans 99.3 2.2E-11 4.7E-16 141.1 13.5 131 733-867 4-134 (610)
34 TIGR03697 NtcA_cyano global ni 99.3 3.5E-11 7.5E-16 128.0 13.7 118 767-886 1-120 (193)
35 KOG0614 cGMP-dependent protein 99.3 7.6E-12 1.7E-16 142.3 7.7 129 735-863 271-401 (732)
36 PRK09391 fixK transcriptional 99.2 1.1E-10 2.4E-15 128.0 15.7 127 755-886 34-160 (230)
37 PLN02868 acyl-CoA thioesterase 99.2 5.5E-11 1.2E-15 141.6 12.1 117 733-852 5-121 (413)
38 PRK13918 CRP/FNR family transc 99.2 2.9E-10 6.3E-15 121.9 15.1 120 758-886 5-126 (202)
39 PRK14853 nhaA pH-dependent sod 99.0 1.5E-07 3.3E-12 109.5 28.1 271 99-409 64-357 (423)
40 KOG0501 K+-channel KCNQ [Inorg 98.9 5.9E-09 1.3E-13 119.6 10.6 193 646-860 473-669 (971)
41 KOG1113 cAMP-dependent protein 98.7 1.1E-08 2.3E-13 113.1 6.4 111 735-849 239-349 (368)
42 TIGR00773 NhaA Na+/H+ antiport 98.3 0.00014 3E-09 83.7 25.5 255 99-394 54-326 (373)
43 KOG2968 Predicted esterase of 98.3 1E-06 2.2E-11 106.7 6.0 112 754-865 503-614 (1158)
44 COG0786 GltS Na+/glutamate sym 97.9 0.011 2.4E-07 67.7 29.1 142 32-186 6-155 (404)
45 PRK14856 nhaA pH-dependent sod 97.7 0.0055 1.2E-07 71.8 23.2 267 99-409 70-392 (438)
46 KOG2968 Predicted esterase of 97.7 0.00015 3.4E-09 88.4 10.7 136 766-919 393-541 (1158)
47 PRK14855 nhaA pH-dependent sod 97.6 0.01 2.2E-07 69.4 24.2 264 99-409 65-377 (423)
48 PRK14854 nhaA pH-dependent sod 97.6 0.0072 1.6E-07 69.6 21.3 267 99-409 58-342 (383)
49 PRK09560 nhaA pH-dependent sod 97.6 0.0064 1.4E-07 70.3 20.8 269 99-409 61-347 (389)
50 COG3004 NhaA Na+/H+ antiporter 97.5 0.019 4E-07 63.9 22.0 259 110-405 75-348 (390)
51 PRK09561 nhaA pH-dependent sod 97.4 0.01 2.2E-07 68.6 20.0 268 99-409 61-345 (388)
52 PF06965 Na_H_antiport_1: Na+/ 97.4 0.0014 3.1E-08 75.3 12.2 259 99-394 57-333 (378)
53 PF03616 Glt_symporter: Sodium 97.2 0.42 9.1E-06 56.3 30.8 94 32-136 4-100 (368)
54 PF04831 Popeye: Popeye protei 97.0 0.018 3.9E-07 57.7 14.2 116 746-866 14-136 (153)
55 PRK11832 putative DNA-binding 96.9 0.0085 1.8E-07 63.8 11.6 94 753-850 16-110 (207)
56 PF03601 Cons_hypoth698: Conse 96.8 0.4 8.7E-06 54.9 25.2 148 55-215 22-169 (305)
57 PRK03562 glutathione-regulated 96.4 0.088 1.9E-06 66.4 17.8 73 100-175 268-340 (621)
58 PRK03659 glutathione-regulated 96.2 0.13 2.9E-06 64.6 18.0 75 99-176 264-338 (601)
59 KOG3542 cAMP-regulated guanine 95.4 0.01 2.2E-07 70.4 3.4 109 735-848 280-390 (1283)
60 PRK10669 putative cation:proto 94.9 0.79 1.7E-05 57.3 18.2 73 101-176 277-349 (558)
61 PLN03159 cation/H(+) antiporte 94.8 0.38 8.2E-06 62.7 15.4 72 101-175 323-396 (832)
62 TIGR00210 gltS sodium--glutama 94.3 15 0.00033 43.7 34.6 118 32-166 4-130 (398)
63 COG0475 KefB Kef-type K+ trans 94.1 1.1 2.4E-05 53.4 16.1 115 50-179 234-349 (397)
64 PF05684 DUF819: Protein of un 93.8 18 0.0004 42.8 29.2 84 58-153 24-107 (378)
65 TIGR00698 conserved hypothetic 93.6 18 0.00038 42.1 32.2 148 55-215 27-175 (335)
66 TIGR03802 Asp_Ala_antiprt aspa 92.9 1 2.2E-05 56.2 13.3 131 37-186 12-146 (562)
67 PF06826 Asp-Al_Ex: Predicted 91.3 2.2 4.8E-05 44.5 11.6 126 41-179 3-133 (169)
68 PRK03818 putative transporter; 90.9 3 6.5E-05 51.9 14.3 128 33-178 4-138 (552)
69 PRK04972 putative transporter; 90.2 3.3 7.1E-05 51.7 13.7 114 37-169 14-131 (558)
70 PF13593 DUF4137: SBF-like CPA 89.8 44 0.00095 38.6 22.6 149 96-252 27-182 (313)
71 TIGR03082 Gneg_AbrB_dup membra 89.7 15 0.00032 37.9 15.9 123 44-186 4-130 (156)
72 PF01758 SBF: Sodium Bile acid 89.4 8.9 0.00019 40.7 14.6 109 104-217 2-113 (187)
73 COG2855 Predicted membrane pro 87.9 58 0.0013 37.6 28.1 145 55-215 33-178 (334)
74 PRK12460 2-keto-3-deoxyglucona 87.9 6.2 0.00013 44.9 12.5 72 105-179 197-270 (312)
75 PF03956 DUF340: Membrane prot 87.9 2 4.3E-05 45.8 8.3 88 64-169 3-95 (191)
76 TIGR00832 acr3 arsenical-resis 86.5 72 0.0016 37.1 23.5 103 104-212 47-153 (328)
77 PF03390 2HCT: 2-hydroxycarbox 86.0 7.3 0.00016 46.1 12.2 136 37-184 252-391 (414)
78 COG0385 Predicted Na+-dependen 85.8 74 0.0016 36.7 20.0 147 101-252 39-189 (319)
79 PF03601 Cons_hypoth698: Conse 85.5 24 0.00051 40.6 15.8 36 262-297 3-41 (305)
80 KOG3542 cAMP-regulated guanine 84.9 0.75 1.6E-05 55.4 3.5 91 734-837 35-125 (1283)
81 COG2985 Predicted permease [Ge 84.7 5.9 0.00013 47.2 10.5 87 101-188 60-149 (544)
82 TIGR00783 ccs citrate carrier 84.5 6 0.00013 45.8 10.4 134 38-184 186-324 (347)
83 TIGR00210 gltS sodium--glutama 84.3 21 0.00045 42.6 15.2 171 32-211 216-393 (398)
84 COG0679 Predicted permeases [G 83.5 92 0.002 35.9 28.9 140 283-453 168-307 (311)
85 TIGR00698 conserved hypothetic 83.0 35 0.00077 39.7 16.0 36 262-297 7-46 (335)
86 COG2431 Predicted membrane pro 82.5 7.1 0.00015 43.3 9.4 90 61-168 108-201 (297)
87 PRK05326 potassium/proton anti 82.0 13 0.00028 46.6 13.1 65 100-166 274-338 (562)
88 COG3493 CitS Na+/citrate sympo 81.5 19 0.00041 41.8 12.5 85 99-184 322-410 (438)
89 TIGR00946 2a69 he Auxin Efflux 78.1 1.4E+02 0.003 34.5 28.5 140 282-454 181-321 (321)
90 TIGR00844 c_cpa1 na(+)/h(+) an 77.6 20 0.00043 46.1 12.4 27 270-297 27-53 (810)
91 COG3493 CitS Na+/citrate sympo 77.5 1.5E+02 0.0033 34.7 25.9 41 260-301 357-397 (438)
92 PRK04972 putative transporter; 76.7 24 0.00053 44.1 12.9 132 37-183 383-526 (558)
93 PF03812 KdgT: 2-keto-3-deoxyg 76.6 1.5E+02 0.0032 34.1 18.5 133 104-246 49-187 (314)
94 PF05145 AmoA: Putative ammoni 73.9 52 0.0011 38.1 13.8 106 41-163 158-267 (318)
95 PF03616 Glt_symporter: Sodium 73.7 58 0.0013 38.5 14.4 109 32-152 218-331 (368)
96 PF05145 AmoA: Putative ammoni 73.7 1.8E+02 0.0039 33.7 29.9 50 136-190 63-112 (318)
97 TIGR02454 CbiQ_TIGR cobalt ABC 73.0 40 0.00086 35.8 11.9 25 167-191 110-134 (198)
98 COG1346 LrgB Putative effector 72.9 1.5E+02 0.0032 32.5 15.7 106 36-151 7-115 (230)
99 COG2855 Predicted membrane pro 72.5 70 0.0015 37.0 14.0 146 278-457 33-182 (334)
100 TIGR00400 mgtE Mg2+ transporte 72.5 29 0.00062 42.3 11.9 43 56-111 282-324 (449)
101 TIGR01625 YidE_YbjL_dupl AspT/ 70.9 38 0.00082 34.9 10.5 111 61-183 23-138 (154)
102 PRK04288 antiholin-like protei 70.5 1.7E+02 0.0038 32.2 22.0 35 117-151 84-118 (232)
103 PRK04125 murein hydrolase regu 68.3 25 0.00054 35.6 8.3 48 102-152 70-117 (141)
104 TIGR00808 malonate_madM malona 67.5 1.2E+02 0.0025 32.5 13.0 107 36-152 17-130 (254)
105 PRK11660 putative transporter; 65.2 3.1E+02 0.0067 34.5 19.2 79 116-196 272-361 (568)
106 PF03547 Mem_trans: Membrane t 64.5 2.9E+02 0.0063 32.5 26.1 53 283-336 244-296 (385)
107 TIGR00659 conserved hypothetic 62.6 2.4E+02 0.0053 31.0 19.0 34 117-150 78-111 (226)
108 PRK12460 2-keto-3-deoxyglucona 61.6 3E+02 0.0066 31.7 16.7 79 105-184 50-129 (312)
109 COG0798 ACR3 Arsenite efflux p 59.8 3.3E+02 0.0073 31.6 26.3 180 60-256 18-204 (342)
110 TIGR02865 spore_II_E stage II 59.5 4.1E+02 0.0089 34.8 19.2 20 233-252 191-210 (764)
111 PRK01658 holin-like protein; V 59.0 50 0.0011 32.7 8.3 48 102-152 67-114 (122)
112 PF05982 DUF897: Domain of unk 58.0 1.1E+02 0.0024 35.2 11.9 115 60-188 177-293 (327)
113 COG3180 AbrB Putative ammonia 57.1 1.7E+02 0.0037 34.2 13.4 130 21-163 171-300 (352)
114 TIGR03802 Asp_Ala_antiprt aspa 55.4 60 0.0013 40.7 10.3 109 60-183 416-531 (562)
115 TIGR00841 bass bile acid trans 54.8 3.7E+02 0.008 30.6 23.4 85 106-195 14-103 (286)
116 PF00375 SDF: Sodium:dicarboxy 49.1 4.7E+02 0.01 31.1 16.2 118 106-225 188-319 (390)
117 PRK03818 putative transporter; 48.7 1.2E+02 0.0027 37.9 11.5 105 62-181 403-515 (552)
118 TIGR00815 sulP high affinity s 48.1 6.6E+02 0.014 31.5 21.8 79 116-196 252-341 (563)
119 PRK11753 DNA-binding transcrip 47.3 46 0.00099 35.5 6.7 44 874-918 6-52 (211)
120 PF04172 LrgB: LrgB-like famil 47.0 4.2E+02 0.0091 28.9 14.4 34 118-151 69-102 (215)
121 PRK01821 hypothetical protein; 46.8 1.2E+02 0.0025 30.6 8.8 48 102-152 72-119 (133)
122 PF00999 Na_H_Exchanger: Sodiu 46.8 9.5 0.00021 45.0 1.4 108 53-176 228-339 (380)
123 TIGR00831 a_cpa1 Na+/H+ antipo 45.4 1.1E+02 0.0025 37.9 10.6 77 641-719 444-520 (525)
124 KOG2290 Rhomboid family protei 45.3 1.1E+02 0.0023 36.5 9.2 26 308-333 536-561 (652)
125 KOG3826 Na+/H+ antiporter [Ino 44.0 34 0.00073 37.3 4.8 111 58-180 126-236 (252)
126 PF01384 PHO4: Phosphate trans 43.4 5.6E+02 0.012 29.8 15.2 71 174-255 77-148 (326)
127 COG3329 Predicted permease [Ge 41.9 5.9E+02 0.013 29.2 18.7 26 193-218 210-235 (372)
128 PF03977 OAD_beta: Na+-transpo 41.3 2.6E+02 0.0057 32.4 11.4 106 138-256 195-302 (360)
129 PF03812 KdgT: 2-keto-3-deoxyg 39.9 2.2E+02 0.0047 32.8 10.5 41 104-144 201-241 (314)
130 KOG3599 Ca2+-modulated nonsele 39.8 1E+03 0.022 31.3 19.8 101 97-216 467-570 (798)
131 TIGR03136 malonate_biotin Na+- 39.6 2.3E+02 0.005 33.2 10.7 37 152-202 247-283 (399)
132 smart00835 Cupin_1 Cupin. This 39.1 1.2E+02 0.0026 30.5 7.9 80 759-841 32-112 (146)
133 PLN02868 acyl-CoA thioesterase 38.2 47 0.001 39.9 5.5 48 871-919 14-64 (413)
134 TIGR00932 2a37 transporter, mo 36.6 2.6E+02 0.0056 31.3 10.9 59 274-339 9-67 (273)
135 COG2985 Predicted permease [Ge 36.4 1.3E+02 0.0028 36.5 8.3 125 38-179 368-507 (544)
136 PF13194 DUF4010: Domain of un 36.1 6E+02 0.013 27.6 16.0 60 144-205 9-68 (211)
137 cd00038 CAP_ED effector domain 35.1 55 0.0012 30.1 4.4 44 874-918 3-49 (115)
138 COG0786 GltS Na+/glutamate sym 34.5 7.2E+02 0.016 29.6 13.8 99 36-143 223-323 (404)
139 PLN03192 Voltage-dependent pot 34.0 1.2E+02 0.0026 40.1 8.7 47 871-918 380-429 (823)
140 TIGR00793 kdgT 2-keto-3-deoxyg 33.7 1.3E+02 0.0028 34.4 7.4 155 106-276 51-211 (314)
141 TIGR00946 2a69 he Auxin Efflux 33.0 5.8E+02 0.013 29.3 13.3 75 57-143 180-254 (321)
142 smart00100 cNMP Cyclic nucleot 32.6 56 0.0012 30.1 4.1 45 874-919 3-50 (120)
143 TIGR01109 Na_pump_decarbB sodi 32.1 3.6E+02 0.0079 31.2 10.6 39 151-202 208-246 (354)
144 PRK10263 DNA translocase FtsK; 31.9 1E+03 0.022 33.0 16.2 15 281-295 141-155 (1355)
145 PRK05274 2-keto-3-deoxyglucona 31.7 8.8E+02 0.019 28.2 15.0 83 106-189 53-141 (326)
146 PF07883 Cupin_2: Cupin domain 31.6 1.1E+02 0.0024 26.1 5.5 66 762-837 3-70 (71)
147 PRK09903 putative transporter 31.6 8.4E+02 0.018 27.9 30.3 138 284-454 174-311 (314)
148 PRK10712 PTS system fructose-s 31.6 1.1E+03 0.025 29.5 16.4 21 233-253 316-336 (563)
149 PF06738 DUF1212: Protein of u 31.4 3.2E+02 0.0069 28.8 10.0 55 239-294 134-188 (193)
150 PRK10712 PTS system fructose-s 31.2 1.2E+03 0.025 29.5 16.4 15 61-75 315-329 (563)
151 TIGR00793 kdgT 2-keto-3-deoxyg 30.9 6.1E+02 0.013 29.2 12.1 40 104-143 201-240 (314)
152 PRK10263 DNA translocase FtsK; 30.9 4.4E+02 0.0095 36.3 12.7 19 278-296 59-77 (1355)
153 PRK05274 2-keto-3-deoxyglucona 30.2 1.7E+02 0.0036 34.1 8.0 39 105-143 204-242 (326)
154 TIGR03037 anthran_nbaC 3-hydro 28.8 1.6E+02 0.0034 30.6 6.6 65 769-841 41-105 (159)
155 PF04831 Popeye: Popeye protei 28.8 1.9E+02 0.0042 29.6 7.1 56 875-930 14-81 (153)
156 PRK08633 2-acyl-glycerophospho 28.5 1.6E+03 0.035 30.4 27.9 10 446-455 480-489 (1146)
157 COG1380 Putative effector of m 28.1 3.3E+02 0.0072 27.2 8.5 48 102-152 68-115 (128)
158 PRK09392 ftrB transcriptional 28.1 76 0.0016 34.6 4.7 47 871-918 13-62 (236)
159 PRK11161 fumarate/nitrate redu 28.0 1.7E+02 0.0036 31.8 7.3 43 875-918 23-69 (235)
160 PF11700 ATG22: Vacuole efflux 27.6 1.2E+03 0.026 28.6 21.9 48 179-226 273-320 (477)
161 KOG1650 Predicted K+/H+-antipo 27.5 5.5E+02 0.012 33.7 12.8 74 100-177 310-383 (769)
162 PF10925 DUF2680: Protein of u 27.3 2.9E+02 0.0062 23.7 6.8 45 530-574 9-53 (59)
163 COG3671 Predicted membrane pro 27.2 4.8E+02 0.01 25.6 8.9 24 309-332 65-88 (125)
164 PF02268 TFIIA_gamma_N: Transc 27.2 2.2E+02 0.0047 23.5 5.8 35 538-572 12-46 (49)
165 KOG0498 K+-channel ERG and rel 26.2 2.1E+02 0.0046 36.9 8.4 94 871-974 425-522 (727)
166 PRK13666 hypothetical protein; 26.0 3.1E+02 0.0068 25.5 7.1 50 668-723 37-86 (92)
167 COG3718 IolB Uncharacterized e 25.4 2.4E+02 0.0053 30.9 7.4 66 759-838 31-109 (270)
168 PF00950 ABC-3: ABC 3 transpor 24.9 1E+03 0.022 26.7 18.8 86 194-292 29-117 (257)
169 COG0805 TatC Sec-independent p 24.9 5.8E+02 0.012 28.7 10.6 19 157-175 200-218 (255)
170 PRK14695 serine/threonine tran 23.6 1E+03 0.022 27.6 12.8 48 180-227 190-241 (319)
171 TIGR00359 cello_pts_IIC phosph 23.5 1.4E+03 0.029 27.7 15.4 57 278-334 131-196 (423)
172 TIGR00410 lacE PTS system, lac 23.5 1.4E+03 0.029 27.7 15.4 57 278-334 131-196 (423)
173 PRK10537 voltage-gated potassi 23.4 6.9E+02 0.015 29.9 11.8 16 156-171 167-182 (393)
174 COG2270 Permeases of the major 22.7 1.1E+03 0.023 28.7 12.8 25 181-205 246-270 (438)
175 COG2118 DNA-binding protein [G 22.5 2.2E+02 0.0047 27.7 5.7 49 658-719 53-105 (116)
176 PRK10255 PTS system N-acetyl g 22.3 1.2E+03 0.026 29.9 14.0 18 278-295 164-181 (648)
177 PRK13628 serine/threonine tran 21.8 7E+02 0.015 29.9 11.5 61 166-226 258-326 (402)
178 KOG2718 Na+-bile acid cotransp 21.8 3.1E+02 0.0068 32.4 8.2 105 104-211 117-222 (371)
179 PRK15475 oxaloacetate decarbox 20.8 9E+02 0.02 28.6 11.2 38 151-201 279-316 (433)
180 COG0395 UgpE ABC-type sugar tr 20.3 1.3E+03 0.028 26.2 14.1 91 121-212 70-166 (281)
181 PRK15477 oxaloacetate decarbox 20.1 9.6E+02 0.021 28.4 11.2 38 151-201 279-316 (433)
182 COG4838 Uncharacterized protei 20.0 5E+02 0.011 23.5 7.0 49 669-723 38-86 (92)
No 1
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=1.5e-61 Score=585.63 Aligned_cols=501 Identities=24% Similarity=0.363 Sum_probs=392.3
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHH
Q 001116 44 LVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIK 123 (1152)
Q Consensus 44 l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk 123 (1152)
++.+.+...+++|+++|++++++++|+++|+.+.+ . ...++|++++.+++|+++|++|+++|++.+|
T Consensus 7 ~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~-~------------~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~ 73 (525)
T TIGR00831 7 VMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLL-P------------EVPLDREIVLFLFLPPLLFEAAMNTDLRELR 73 (525)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcccc-C------------CCCCCHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 33444555678999999999999999999986321 0 1357899999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 001116 124 RCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGT 203 (1152)
Q Consensus 124 ~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND~~ 203 (1152)
+++++++.+|+++++++++++|++++++ + ++||..|+++||++|||||+++.+++++.++|+++.++++|||++||++
T Consensus 74 ~~~~~i~~la~~~vlit~~~v~~~~~~~-~-~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~~ 151 (525)
T TIGR00831 74 ENFRPIALIAFLLVVVTTVVVGFSLNWI-L-GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGA 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchH
Confidence 9999999999999999999999999884 3 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhccc
Q 001116 204 AIVVYQLFFQMVLG-KSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADV 282 (1152)
Q Consensus 204 aivlf~~~~~~~~~-~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~d~~~~i~ltl~~~y~~y~iaee~lg~ 282 (1152)
++++|.++..+..+ +.+++...+..+...++||+++|+++|++..+++++..+++..++.++++++|++|++| |.+|+
T Consensus 152 alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lA-e~lg~ 230 (525)
T TIGR00831 152 ALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLA-ERFHF 230 (525)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 99999999988864 55666554444445677889999999999887887767788889999999999999999 67999
Q ss_pred cchHHHHHHHHHHhhhhhc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccc--ccccchHH---HHH
Q 001116 283 SGVLTVMTLGMFYAAVART-AFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIF--QNHGNSWG---YLI 356 (1152)
Q Consensus 283 SGvlavvvaGl~l~~~~~~-~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~--~~~~~~~~---~~l 356 (1152)
||++|+|++|++++++++. +.+++.+...++||+.+++++|+++|+++|++++.......... ......+. ..+
T Consensus 231 SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (525)
T TIGR00831 231 SGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAF 310 (525)
T ss_pred CHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999987766 77888889999999999999999999999999975332110000 00000111 134
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHhhCCCCChhHHHHHhhhchhhHHHHHHHhhhhccc-CCCCcccccccceehhhhhh
Q 001116 357 LLYIFVQVSRLFVVGTL--YPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSS-GGSSLITSETGTLFVFFTGG 433 (1152)
Q Consensus 357 ~l~~~~~v~R~l~v~~~--~p~l~~~~~~~~~~e~~vl~w~GlRGavslalAl~v~~~~-~~~~~~~~~~~~~~vf~~~g 433 (1152)
+++..+.+.|+++++.. .++.++.+.+++||++++++|+|+||++++++|+++|... ++.+++ .++.+++++++
T Consensus 311 ~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p---~r~~i~~~~~~ 387 (525)
T TIGR00831 311 VIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFP---ARYELVFLAAG 387 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheeccchHHHHHHHHHHccccccCCCCCc---hHHHHHHHHHH
Confidence 44556677787765432 1223334456889999999999999999999999999753 333443 35789999999
Q ss_pred HHHhhhhhhhhcHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHH-HHHHHHhhhhcCCC
Q 001116 434 IVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTV-KRYIRCLNDLEGVP 512 (1152)
Q Consensus 434 vvllTlli~g~t~~~ll~~Lgl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~~v-~~~~~~l~~~~~~~ 512 (1152)
+|++|+++||+|+|+++|++|+++.++. +.....++..+.+.+.+.++++.++...+++..+.+ ++|..++++.+.+.
T Consensus 388 vVl~TllvqG~tlp~l~r~l~~~~~~~~-~~e~~~a~~~~~~aa~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 466 (525)
T TIGR00831 388 VILFSLLVQGISLPIFVKRKFVSEHSER-ELEEIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRADG 466 (525)
T ss_pred HHHHHHHHHHhhHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999877543 333445567788888888888776554433323333 45555554432221
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 001116 513 MHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDE 568 (1152)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~r~r~l~~~~~~~~~~~~~g~is~~~~~~L~~~vd~ 568 (1152)
.. .. + +...+.+...+.|++++++||+.+.+++++|+||+++++.+++.+|.
T Consensus 467 ~~-~~--~-~~~~~~~~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~ 518 (525)
T TIGR00831 467 EE-KI--R-SGMGEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDL 518 (525)
T ss_pred cc-ch--h-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhH
Confidence 00 00 0 00011112346888899999999999999999999999999888764
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=7.5e-56 Score=534.88 Aligned_cols=402 Identities=27% Similarity=0.466 Sum_probs=342.1
Q ss_pred CCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHH
Q 001116 58 RVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGV 137 (1152)
Q Consensus 58 ~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gv 137 (1152)
++|++++++++|+++|+...+... ++ ...++|++|+.++||+|+|++|+++|++.|++++++++++|++|+
T Consensus 34 ~lP~s~llil~GlllG~i~~~~~~--------~~-~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gv 104 (559)
T TIGR00840 34 AVPESVLLIVYGLLVGGIIKASPH--------ID-PPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGT 104 (559)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCC--------Cc-cCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999986443221 11 146899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcc------CCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 138 MISTFFLGAALKLTFP------YDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLF 211 (1152)
Q Consensus 138 lit~~~~g~~~~~l~~------~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND~~aivlf~~~ 211 (1152)
+++++++|+.+|++.+ .+++|..|++|||++|||||+||.++++++++|+++.++++|||++||++|+++|.++
T Consensus 105 lit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll~gESllNDavaIVLf~~~ 184 (559)
T TIGR00840 105 LINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTF 184 (559)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhheehhhhhhccHHHHHHHHH
Confidence 9999999999987643 3579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc--cCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhccccch
Q 001116 212 FQMVL--GKSFGWGA----IIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGV 285 (1152)
Q Consensus 212 ~~~~~--~~~~s~~~----i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~d~~~~i~ltl~~~y~~y~iaee~lg~SGv 285 (1152)
..+.. ++..++.+ +..|+ ...+||+++|+++|+++.+++++..+++..+..++++++|++|++| |.+|+||+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~i~~f~-~~~~GGiliG~v~G~l~~~l~r~~~~~~~~e~~l~l~~~yl~Y~lA-E~l~~SGi 262 (559)
T TIGR00840 185 IKFHKTADEPVTIVDVFEGCASFF-VVTCGGLLVGVVFGFLVAFITRFTHHIRQIEPLFVFLISYLSYLFA-ETLHLSGI 262 (559)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-HHhccchH
Confidence 98875 23444432 23344 3467899999999999999999887777889999999999999999 78999999
Q ss_pred HHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchHHHHHHHHHHHHHH
Q 001116 286 LTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVS 365 (1152)
Q Consensus 286 lavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~~v~ 365 (1152)
+|+++||++++++.+.+++++.+...++||+++++++|+++|+++|+.+.... ...+|.++++++++++++
T Consensus 263 LAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~---------~~~~~~~i~~~l~~~ll~ 333 (559)
T TIGR00840 263 LALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN---------HEWNWAFVVATLSFCVIY 333 (559)
T ss_pred HHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---------hhHHHHHHHHHHHHHHHH
Confidence 99999999999988888899999999999999999999999999999874311 123456666677888999
Q ss_pred HHHHHHHHHHHHHhh-CCCCChhHHHHHhhhchhhHHHHHHHhhhhcccCCCCcccccccceehhhhhhHHHhhhhhhhh
Q 001116 366 RLFVVGTLYPVLRNF-GYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGS 444 (1152)
Q Consensus 366 R~l~v~~~~p~l~~~-~~~~~~~e~~vl~w~GlRGavslalAl~v~~~~~~~~~~~~~~~~~~vf~~~gvvllTlli~g~ 444 (1152)
|+++++.+.++.+++ +.+++|+++++++|+|+||++++++|+.+|... . ..++.+++.++++|++|+++||+
T Consensus 334 R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~GlRGaVa~aLAl~l~~~~----~---~~~~~i~~~t~~VVl~TvlvqG~ 406 (559)
T TIGR00840 334 RVLGVRTLSWITNEFRPVEIPYKDQLVIFYAGLRGAVAFALALLLDEKI----F---PYKFLFVTTTLVVVFFTVIFQGG 406 (559)
T ss_pred HHHHHHHHHHHHHHhccCCCChhhhhheeeeccccHHHHHHHHhCCCCC----c---chHHHHHHHHHeeehHHHHHHHh
Confidence 999998887777655 457899999999999999999999999886431 1 13578889999999999999999
Q ss_pred cHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001116 445 TTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGD 486 (1152)
Q Consensus 445 t~~~ll~~Lgl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 486 (1152)
|++|++++|++++.++.++...+....+..+.....+|+...
T Consensus 407 T~~pl~~~L~l~~~~~~~~~~~e~~~~~~~~~~~~~ie~~~g 448 (559)
T TIGR00840 407 TIKPLVEVLKVKKGCISKTKINEELHDREFDHLLPGIEDICG 448 (559)
T ss_pred hHHHHHHHhCCCCCccchhhHHHHHHHHHHHHHHhHHHHHhh
Confidence 999999999999888776666566556667777766766654
No 3
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-53 Score=493.02 Aligned_cols=434 Identities=33% Similarity=0.505 Sum_probs=366.4
Q ss_pred ccchhhhhhhc--CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHhhccccccccccCc
Q 001116 11 LPYRTLEEEQK--SGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTR---VPYTVALLIIGIALGSLEYGTSHQLGK 85 (1152)
Q Consensus 11 ~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~l~~~l~l~~~~~~l~~r~~---lP~~v~lil~GillG~~~~~~~~~l~~ 85 (1152)
.+|+..+.+.+ +...+...++....++++.+++++++++++|++++.| +|+++..+++|+++|.+.....++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~ 88 (575)
T KOG1965|consen 9 LSYDSLEIATDISSDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSS 88 (575)
T ss_pred CCCccchhccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCccc
Confidence 46664444333 3334444466777889999999999999999999999 999999999999999987665543333
Q ss_pred cccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----ccCCCcHHHH
Q 001116 86 IGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT----FPYDWSWKTS 161 (1152)
Q Consensus 86 ~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l----~~~~~~~~~a 161 (1152)
.+. +. ..++|+.|+.++|||++|++|++++.+.+++|+.+|.++|++|++|++.++|..++++ ++++|+|..|
T Consensus 89 ~~~--~~-~~f~~~~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~ 165 (575)
T KOG1965|consen 89 RGK--RI-LVFSPDLFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDC 165 (575)
T ss_pred ccc--ee-EEecccHHHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHH
Confidence 222 22 3689999999999999999999999999999999999999999999999999999988 6778999999
Q ss_pred HHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHH--HHHHHHHHHHHHHHH
Q 001116 162 LLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGA--IIKFLAQVSLGAVGM 239 (1152)
Q Consensus 162 lllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~--i~~~~~~~~lggi~i 239 (1152)
+++||++|+||||+|++|++++++.+++..|+.|||++|||++||+|+.+.....+...++.. ++..|+.++.|++++
T Consensus 166 L~fGaliSATDPVtvLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~l 245 (575)
T KOG1965|consen 166 LAFGALISATDPVTVLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGL 245 (575)
T ss_pred HHHhhHhcccCchHHHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888766555543 777778899999999
Q ss_pred HHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHH
Q 001116 240 GLAFGIASVLWLGFIFN--DTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEM 317 (1152)
Q Consensus 240 G~~~G~~~~~~l~~~~~--d~~~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~ 317 (1152)
|+++|.+..+|+|++.. ++..|+.+.+.++|.+|++| |.+|+|||+++++||+++++|.+++++++++...+++|.+
T Consensus 246 Gv~~GlisA~~lK~~~l~~~~~lE~al~ll~sY~sY~lA-E~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~ 324 (575)
T KOG1965|consen 246 GVAIGLISALVLKFLYLRRTPSLESALMLLMSYLSYLLA-EGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRT 324 (575)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999998764 78899999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-C----CChhHHHHH
Q 001116 318 VAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGY-G----LEWKEAIIL 392 (1152)
Q Consensus 318 i~~l~~~liFil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~~-~----~~~~e~~vl 392 (1152)
++|++|+++|+++|+.+-. ..... +....++++..+.++++|++-+|.+..+++..+. + ++.++..++
T Consensus 325 lsflAEtfIF~Y~Gl~~f~----~~k~~---~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~ 397 (575)
T KOG1965|consen 325 LSFLAETFIFIYLGLSAFD----FQKHV---YKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIM 397 (575)
T ss_pred HHHHHHHHHHHHHhHHHhc----cccee---eechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHh
Confidence 9999999999999986521 11110 1113467778889999999999888777654432 3 788999999
Q ss_pred hhhc-hhhHHHHHHHhhhhcccCCCCcccccccceehhhhhhHHHhhhhhhhhcHHHHHhhcCCCCCcHH
Q 001116 393 VWSG-LRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSAT 461 (1152)
Q Consensus 393 ~w~G-lRGavslalAl~v~~~~~~~~~~~~~~~~~~vf~~~gvvllTlli~g~t~~~ll~~Lgl~~~~~~ 461 (1152)
+|+| +|||+++|+|+-.-.+.+ +..++.+...+..+|++|+++.|.++.|++++|..+.....
T Consensus 398 ~w~g~lRGAvs~ALa~~~~~~~~------~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~ 461 (575)
T KOG1965|consen 398 WWAGGLRGAVSFALALGDFTDSP------HTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAA 461 (575)
T ss_pred HhhhhhhHHHHHHHHhhhccccc------cccccEEEEeeeeeeeeeeeeeCCccHHHHHHhcccccccc
Confidence 9977 999999999986432211 11235666667779999999999999999999998766544
No 4
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-50 Score=471.63 Aligned_cols=405 Identities=27% Similarity=0.469 Sum_probs=345.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHH
Q 001116 33 PTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFE 112 (1152)
Q Consensus 33 ~~~~ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~ 112 (1152)
....++...++++++.+...+.+++.+|..+..++.|++.|+...+. .... ...+++++..+++|+++|+
T Consensus 4 ~~~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~------~~~~----~~~~~el~~~l~l~ilLf~ 73 (429)
T COG0025 4 SLMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNL------ISPD----LELDPELFLVLFLAILLFA 73 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcc------cccc----ccCChHHHHHHHHHHHHHH
Confidence 33456667778888899999999999999999999999999753321 1111 3678999999999999999
Q ss_pred hhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHH
Q 001116 113 SSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTI 192 (1152)
Q Consensus 113 ~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~l 192 (1152)
+|+++|++.+|+++++++.++++++++|++.+|+++|+++| +++|..|+++||++|||||+++.+++++.++|+|+.++
T Consensus 74 ~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~i 152 (429)
T COG0025 74 GGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTI 152 (429)
T ss_pred hHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHH
Q 001116 193 IEGESLMNDGTAIVVYQLFFQMVL-GKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN----DTVIEIALTLA 267 (1152)
Q Consensus 193 l~gESLlND~~aivlf~~~~~~~~-~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~----d~~~~i~ltl~ 267 (1152)
++|||++||++++++|.+++++.. ++.++.......+...++||+++|++.|++..+.+++... +...+..++++
T Consensus 153 L~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~ 232 (429)
T COG0025 153 LEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLL 232 (429)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHH
Confidence 999999999999999999999887 4566655555555567888999999999998888887654 57789999999
Q ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccc
Q 001116 268 VSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKG-ESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQ 346 (1152)
Q Consensus 268 ~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~-~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~ 346 (1152)
.+|.+|.+| |.+|.||++|++++|++++...+.+.++ ..+...++||+.+.+++|+++|+++|.+++...+.
T Consensus 233 ~~~~~~~~a-~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~------ 305 (429)
T COG0025 233 LAFAAYLLA-EALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLL------ 305 (429)
T ss_pred HHHHHHHHH-HHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH------
Confidence 999999999 7889999999999999987333444444 44788899999999999999999999999865431
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCChhHHHHHhhhchhhHHHHHHHhhhhcccCCCCcccccccc
Q 001116 347 NHGNSWGYLILLYIFVQVSRLFVVGTLYPVLR-NFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGT 425 (1152)
Q Consensus 347 ~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~-~~~~~~~~~e~~vl~w~GlRGavslalAl~v~~~~~~~~~~~~~~~~ 425 (1152)
...+..++++.++++++|+++++..++..+ ......+|+++++++|+|+||++++++|+++|....+ ..++
T Consensus 306 --~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~G~RG~vsla~al~~p~~~~~------~~~~ 377 (429)
T COG0025 306 --ALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWAGPRGVVSLALALLIPLELPG------PARE 377 (429)
T ss_pred --HhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhcccccHHHHHHHHHchhhccc------hhhh
Confidence 122667788889999999999987665532 3344679999999999999999999999999876432 2357
Q ss_pred eehhhhhhHHHhhhhhhhhcHHHHHhhcCCCCCcHHHH
Q 001116 426 LFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKR 463 (1152)
Q Consensus 426 ~~vf~~~gvvllTlli~g~t~~~ll~~Lgl~~~~~~~~ 463 (1152)
.+++.++++|++|+++||.++|++++++...+.+..++
T Consensus 378 ~i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~~~~~~~~~ 415 (429)
T COG0025 378 LILFIVFLVILFSLLVQGLTLPPLAKKLEVSEESALAK 415 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCccchhhh
Confidence 88899999999999999999999999999866654333
No 5
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-49 Score=450.98 Aligned_cols=403 Identities=26% Similarity=0.452 Sum_probs=351.2
Q ss_pred CcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHH
Q 001116 59 VPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVM 138 (1152)
Q Consensus 59 lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvl 138 (1152)
+|...+|+++|+++|....+..+ .. ...++|+.|+...|||+++++|+.|+-+.|..|+..|++.|++|++
T Consensus 68 ~PES~lLI~~Gl~lG~ii~~~~~----~~-----~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi 138 (670)
T KOG1966|consen 68 VPESCLLIILGLVLGGIIKALAT----IA-----PFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTI 138 (670)
T ss_pred CchhHHHHHHHHHHHHHHHhhhc----cc-----cccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHH
Confidence 79999999999999987554321 11 1457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccC---C--CcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 139 ISTFFLGAALKLTFPY---D--WSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQ 213 (1152)
Q Consensus 139 it~~~~g~~~~~l~~~---~--~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND~~aivlf~~~~~ 213 (1152)
.+++.+|..++.+.+. + .++..-++||+++|+.|||||.++++|+++++-|--++.||||+|||+.+|+|.++.+
T Consensus 139 ~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe~LfI~VFGESLlNDaVTVVLY~~f~s 218 (670)
T KOG1966|consen 139 WNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLFIIVFGESLLNDAVTVVLYNMFIS 218 (670)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhccccEEEeeeehhhhhcCceEEehHHHHHH
Confidence 9999999988865432 3 4588999999999999999999999999999999999999999999999999999999
Q ss_pred HHccC--CCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhccccchHH
Q 001116 214 MVLGK--SFGWG----AIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLT 287 (1152)
Q Consensus 214 ~~~~~--~~s~~----~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~d~~~~i~ltl~~~y~~y~iaee~lg~SGvla 287 (1152)
++.-+ +..+. .++.|+ .+++||+++|+++|++..+..|+..+-.+++.++.+.+||++|+.| |.+|+|||+|
T Consensus 219 f~~ig~~n~~~~d~~~G~~sFf-VVslGG~lvGivfafl~sl~tkft~~vrviePvfif~~pYlaYL~a-Em~hlSgIlA 296 (670)
T KOG1966|consen 219 FVEIGSDNLTTIDYVLGVVSFF-VVSLGGALVGIVFAFLASLVTKFTKHVRVLEPVFIFLLPYLAYLTA-EMFHLSGILA 296 (670)
T ss_pred HHHhcccceeEeeeecceeEEE-EEecCchhHHHHHHHHHHHHHHhhcceeeecchhhhhHHHHHHHHH-HHHHHHHHHH
Confidence 87643 33332 244555 4688999999999999998888887778899999999999999999 8999999999
Q ss_pred HHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchHHHHHHHHHHHHHHHH
Q 001116 288 VMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRL 367 (1152)
Q Consensus 288 vvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~~v~R~ 367 (1152)
.++||+.+..|-+.+++.++...+..|..+++...++++|+++|++.... ++.++|.++.+.++++.+.|+
T Consensus 297 ii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~---------~h~wd~~Fi~~T~~fc~~~R~ 367 (670)
T KOG1966|consen 297 IIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS---------NHHWDFAFICLTLVFCLIYRA 367 (670)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC---------cceeehhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987431 245678888899999999999
Q ss_pred HHHHHHHHHHHhhCC-CCChhHHHHHhhhchhhHHHHHHHhhhhcccCCCCcccccccceehhhhhhHHHhhhhhhhhcH
Q 001116 368 FVVGTLYPVLRNFGY-GLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTT 446 (1152)
Q Consensus 368 l~v~~~~p~l~~~~~-~~~~~e~~vl~w~GlRGavslalAl~v~~~~~~~~~~~~~~~~~~vf~~~gvvllTlli~g~t~ 446 (1152)
++++.+..+++++.. +++..++++|++||+|||++.+|...+|... ++ ..+.++..|..||++|+++||+|+
T Consensus 368 lgv~~lt~~~N~fr~~k~~~~DQfimsyGGLRGAiaF~LV~lid~~~-----vp--~K~~Fvttti~VIfFTVflQGiTI 440 (670)
T KOG1966|consen 368 IGVVVLTWFLNKFRMVKLEFVDQFIMSYGGLRGAIAFGLVVLIDGAK-----VP--AKNMFVTTTIAVIFFTVFLQGITI 440 (670)
T ss_pred HHhhhhhhhhhhhheeeccccceeeeecCCcchhhheeEEEEecccc-----CC--cccceEeeeeEEEeeeeeecccch
Confidence 999999989987764 7899999999999999999999999887542 11 236788888889999999999999
Q ss_pred HHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 001116 447 QYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDE 488 (1152)
Q Consensus 447 ~~ll~~Lgl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 488 (1152)
+|+++||++++....++.+.+....++.+.....+|+....+
T Consensus 441 kplvk~L~Vk~~~~~~~~m~e~i~~~~~dhlm~gIEDi~G~~ 482 (670)
T KOG1966|consen 441 KPLVKFLKVKRKNKRDPTMNEEIYNRLLDHLMAGIEDIAGQK 482 (670)
T ss_pred HHHHHHHccccccccCchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999998877777666666778888888888877654
No 6
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=7.6e-43 Score=428.45 Aligned_cols=391 Identities=23% Similarity=0.318 Sum_probs=315.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHH
Q 001116 33 PTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFE 112 (1152)
Q Consensus 33 ~~~~ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~ 112 (1152)
....++.++++++++.++..+++|+++|..++++++|+++|+..+|..+ .+. ....+.+..+++++++|.
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~-----~~~-----~~~~~~i~~l~L~~iLF~ 73 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ-----FDN-----YPLAYLVGNLALAVILFD 73 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc-----cCc-----HHHHHHHHHHHHHHHHHc
Confidence 3456777889999999999999999999999999999999997443110 000 112466889999999999
Q ss_pred hhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcC--CChhHH
Q 001116 113 SSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG--ASKKLN 190 (1152)
Q Consensus 113 ~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg--~~~~l~ 190 (1152)
+|+++|++.+|+++++++.+|++|++++++++|+++++++ +++|..|+++|+++++|||++|.+++++.+ ++++++
T Consensus 74 ~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~--g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~ 151 (562)
T PRK05326 74 GGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLL--GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVA 151 (562)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHH
Confidence 9999999999999999999999999999999999888876 789999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHH
Q 001116 191 TIIEGESLMNDGTAIVVYQLFFQMVLGKS--FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN-DTVIEIALTLA 267 (1152)
Q Consensus 191 ~ll~gESLlND~~aivlf~~~~~~~~~~~--~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~-d~~~~i~ltl~ 267 (1152)
+++++||++||+++++++.+++.+..++. .++..+..++. .+++++++|+++|++..+++++... +...+..++++
T Consensus 152 ~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~~i~~l~ 230 (562)
T PRK05326 152 STLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQ-QFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVLA 230 (562)
T ss_pred hHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 99999999999999999999888775544 33444444444 4556677899999988888887633 34467788999
Q ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccc
Q 001116 268 VSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQN 347 (1152)
Q Consensus 268 ~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~ 347 (1152)
+++++|.+| |.+|.||++|++++|+++++.. +..+..++++|+.+++++++++|+++|+.+++..+.
T Consensus 231 ~~l~~~~~a-~~lg~Sg~la~~iaGl~l~n~~-----~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~------- 297 (562)
T PRK05326 231 GALLIFALT-AALGGSGFLAVYLAGLVLGNRP-----IRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLL------- 297 (562)
T ss_pred HHHHHHHHH-HHHCCcHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------
Confidence 999999999 7899999999999999997632 223556889999999999999999999999765431
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhhchhhHHHHHHHhhhhcccCCCCccccccccee
Q 001116 348 HGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLF 427 (1152)
Q Consensus 348 ~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~GlRGavslalAl~v~~~~~~~~~~~~~~~~~~ 427 (1152)
...|..+++.++.++++|+++++ +....++++|||+.+++|+|+||++++++|....... .. ....+
T Consensus 298 -~~~~~~l~i~~~l~~vaR~l~v~-----l~~~~~~~~~~e~~~i~~~g~RG~v~i~lA~~~~~~~----~~---~~~~~ 364 (562)
T PRK05326 298 -DIALPALLLALFLILVARPLAVF-----LSLLPFRFNLREKLFISWVGLRGAVPIVLATFPMMAG----LP---NAQLI 364 (562)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-----HHHccCCCCHhhhheeeeecchhHHHHHHHHHHHHcC----CC---chhhh
Confidence 11233333445567899999984 3344568999999999999999999999997532211 11 11234
Q ss_pred hhhhhhHHHhhhhhhhhcHHHHHhhcCCCCCcHHH
Q 001116 428 VFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATK 462 (1152)
Q Consensus 428 vf~~~gvvllTlli~g~t~~~ll~~Lgl~~~~~~~ 462 (1152)
...++.+|++|+++||+|+|++.|++++..+++.+
T Consensus 365 ~~~~~~vvl~S~~i~g~tl~~~a~~l~l~~~~~~~ 399 (562)
T PRK05326 365 FNVVFFVVLVSLLLQGTTLPWAARKLGVVVPPEAR 399 (562)
T ss_pred hhhhheeeHHHHHHHHhhHHHHHHHcCCCCCCCCC
Confidence 45566799999999999999999999998776543
No 7
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=2.8e-41 Score=408.04 Aligned_cols=393 Identities=18% Similarity=0.177 Sum_probs=295.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCH
Q 001116 40 VGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEV 119 (1152)
Q Consensus 40 l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~ 119 (1152)
-+++++.+.++..+.+|+++|.+++++++|+++||...+..+... .+.. ..+-.+ +..+.|++++|.+|+++++
T Consensus 19 G~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~-~g~~----d~i~le-IteIvL~I~LFa~Gl~L~~ 92 (810)
T TIGR00844 19 GIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS-WGNT----DSITLE-ISRILLCLQVFAVSVELPR 92 (810)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh-cccc----hHHHHH-HHHHHHHHHHHHHHHhCCH
Confidence 344455566666666699999999999999999997543211000 0000 001112 6678999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHh---hcCCChhHHHHHHHH
Q 001116 120 HQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLK---ELGASKKLNTIIEGE 196 (1152)
Q Consensus 120 ~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailk---elg~~~~l~~ll~gE 196 (1152)
+.+|++++.++.|+++++.++.++++++++++++ +++|..|+++||+++||||+++.++++ ..++|+++..++++|
T Consensus 93 ~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR~lL~~E 171 (810)
T TIGR00844 93 KYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-GLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLLSCE 171 (810)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHHhHHhhh
Confidence 9999999999999999999999999999998876 899999999999999999999999998 457899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHH
Q 001116 197 SLMNDGTAIVVYQLFFQMVLG----KSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN----DTVIEIALTLAV 268 (1152)
Q Consensus 197 SLlND~~aivlf~~~~~~~~~----~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~----d~~~~i~ltl~~ 268 (1152)
|++||++|++++.+++.++.. +.....+++..+++.+++|+++|+++|++..+++++..+ +......+.+++
T Consensus 172 SGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~LaL 251 (810)
T TIGR00844 172 SGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFYLIL 251 (810)
T ss_pred hhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 999999999999888776642 112112233333445677788999999998888776542 223445678888
Q ss_pred HHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccc
Q 001116 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNH 348 (1152)
Q Consensus 269 ~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~~ 348 (1152)
++++|.++ +.+|+||+||||+||+++++..+. .. +.....||+.+..+++.++|+++|+.++...+....+ .
T Consensus 252 Ali~~gla-~lLggSGfLAVFVAGl~~gn~~~~--~~--~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l---~ 323 (810)
T TIGR00844 252 ALTCAGFG-SMLGVDDLLVSFFAGTAFAWDGWF--AQ--KTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDI---G 323 (810)
T ss_pred HHHHHHHH-HHhccccHHHHHHHHHHHhcccch--hh--hHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchh---h
Confidence 99999999 789999999999999999874431 11 2234569999999999999999999998765521111 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhhchhhHHHHHHHhhhhcccC--CCC-------cc
Q 001116 349 GNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSG--GSS-------LI 419 (1152)
Q Consensus 349 ~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~GlRGavslalAl~v~~~~~--~~~-------~~ 419 (1152)
...|..+++.++++++.|+.+++.+.+++ +...+|+++++++|.|+||+.++.++........ ..+ .+
T Consensus 324 ~~~w~~ilLaL~LifVrRPpaVlll~~li---~~~~s~rErlFigWFGpRGIGSIyyl~~A~~~~~~~~~~~~~~~~~~~ 400 (810)
T TIGR00844 324 LDVWRLIILSLVVIFLRRIPAVLILKPLI---PDIKSWREAMFIGHFGPIGVGAVFAAILSKSQLESHLTDEETPLNVTP 400 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccCCCHHHHHHheeeccccHHHHHHHHHHHHhhhcccCcccccccccc
Confidence 23566677778888999998886544433 3356899999999999999999987765433221 000 00
Q ss_pred cc-----cccceehhhhhhHHHhhhhhhhhcHHHHH
Q 001116 420 TS-----ETGTLFVFFTGGIVFLTLIVNGSTTQYIL 450 (1152)
Q Consensus 420 ~~-----~~~~~~vf~~~gvvllTlli~g~t~~~ll 450 (1152)
.. .....+.-++..+|+.|++++|++.++++
T Consensus 401 ~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l~ 436 (810)
T TIGR00844 401 GKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVIM 436 (810)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 00 01234566777799999999999999986
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-41 Score=373.16 Aligned_cols=382 Identities=24% Similarity=0.388 Sum_probs=320.6
Q ss_pred HHHHH-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccC--hHHHHHHHHHHHHHHh
Q 001116 37 VIFVG-ISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASID--PDLLLAVFLPALLFES 113 (1152)
Q Consensus 37 ll~l~-~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~--p~l~~~ifLp~LLF~~ 113 (1152)
+++++ ++++.+++...++.|+++|..+.++.+||+.|.-. ++.+. ++-. ..++..+.|.+++|++
T Consensus 8 ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dG------lg~I~------fdNy~~Ay~vg~lALaiILfdg 75 (574)
T COG3263 8 ILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDG------LGGIE------FDNYPFAYMVGNLALAIILFDG 75 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCc------ccccc------cCccHHHHHHHHHHHHHHhhcC
Confidence 44444 77778889999999999999999999999999753 33211 1112 3567778899999999
Q ss_pred hhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHH
Q 001116 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTII 193 (1152)
Q Consensus 114 gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll 193 (1152)
|+.+++..+|-..++.+.+|..||++|+.++|.+++|++ +++|..++++|||+.+||++||.+++++.+++.|+++++
T Consensus 76 G~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll--~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~stL 153 (574)
T COG3263 76 GFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLL--NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVASTL 153 (574)
T ss_pred ccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhhhhE
Confidence 999999999999999999999999999999999999997 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 001116 194 EGESLMNDGTAIVVYQLFFQMVLGK-S-FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYI 271 (1152)
Q Consensus 194 ~gESLlND~~aivlf~~~~~~~~~~-~-~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~d~~~~i~ltl~~~y~ 271 (1152)
|-||.-||.+|+++...++.+..++ + .+|...+.|+.++.+| +++|+..|++..+.++++.-|.-....+.++...+
T Consensus 154 EiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG-~l~G~~gg~l~~~~Inr~nLd~GL~pil~la~~Ll 232 (574)
T COG3263 154 EIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLG-LLLGLGGGKLLLQLINRINLDSGLYPILALAGGLL 232 (574)
T ss_pred EeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 9999999999999999999888765 2 6777777777676665 55899999998888888866777888999999999
Q ss_pred HHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccch
Q 001116 272 AFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNS 351 (1152)
Q Consensus 272 ~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~~~~~ 351 (1152)
+|.++ +.+|.||++||++||+.+++. +-..++.+.+|.+-+++++..++|+.+|+.+.+..+ + .-.
T Consensus 233 ~fs~t-~aiGGsG~LaVYl~Gll~GN~-----~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql-----~---~ia 298 (574)
T COG3263 233 IFSLT-GAIGGSGILAVYLAGLLLGNR-----PIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQL-----L---PIA 298 (574)
T ss_pred HHHHH-HHhcCcccHHHHHHHHHhCCC-----cchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhh-----h---Hhh
Confidence 99999 899999999999999999762 224578899999999999999999999999876443 1 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhhchhhHHHHHHHhhhhcccCCCCcccccccceehhhh
Q 001116 352 WGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFT 431 (1152)
Q Consensus 352 ~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~GlRGavslalAl~v~~~~~~~~~~~~~~~~~~vf~~ 431 (1152)
.+.+++....++++|+++| |+.....+.+++|+.+++|.|+||||++.+|...-..+ -+.+.++.-.+
T Consensus 299 vPailL~l~mifvaRP~aV-----~l~l~Pfrf~~~Ek~fvSWvGLRGAv~IilAifpm~ag-------lena~l~FNvA 366 (574)
T COG3263 299 IPAILLSLWMIFVARPLAV-----FLGLIPFRFNRREKLFVSWVGLRGAVPIILAIFPMMAG-------LENARLFFNVA 366 (574)
T ss_pred HHHHHHHHHHHHHHhHHHH-----HHhhcccccCccchheeehhhcccchhhhHhhhHHhcC-------CccceEEeehh
Confidence 4445566778899999999 45555567899999999999999999999997532221 12334555566
Q ss_pred hhHHHhhhhhhhhcHHHHHhhcCCCCCc
Q 001116 432 GGIVFLTLIVNGSTTQYILHLLDMDKLS 459 (1152)
Q Consensus 432 ~gvvllTlli~g~t~~~ll~~Lgl~~~~ 459 (1152)
+-||++|+++||+|+|+..+++++..++
T Consensus 367 F~VVLvSlliQG~tl~~~a~~l~~i~p~ 394 (574)
T COG3263 367 FFVVLVSLLIQGSTLPWAAKKLKVIVPP 394 (574)
T ss_pred HHHHHHHHHHccCcchHHHHhcccccCC
Confidence 7799999999999999999999997665
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.97 E-value=7.5e-34 Score=334.33 Aligned_cols=370 Identities=25% Similarity=0.396 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHHHh
Q 001116 46 LGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRC 125 (1152)
Q Consensus 46 l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk~~ 125 (1152)
++.++..++||+++|.+++++++|+++|+...+..+ +. ....+.+..+++++++|.+|+++|.+.+|++
T Consensus 7 ~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~------~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~ 75 (380)
T PF00999_consen 7 LAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLE------PD-----NPSFELLAEIGLAFLLFEAGLELDIKELRRN 75 (380)
T ss_dssp ----------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----
T ss_pred hHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhcc------ch-----hhHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 344444478999999999999999999998543211 11 1446778999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HccCCCcHHHHHHhhhhccccCHHHHHHHHhhc-CCChhHHHHHHHHHHHHHHH
Q 001116 126 LVQMILLAGPGVMISTFFLGAALKL-TFPYDWSWKTSLLLGGLLSATDPVAVVALLKEL-GASKKLNTIIEGESLMNDGT 203 (1152)
Q Consensus 126 ~~~illLav~gvlit~~~~g~~~~~-l~~~~~~~~~alllGails~TDpvaV~ailkel-g~~~~l~~ll~gESLlND~~ 203 (1152)
+++.+.+++.+++++.+++|+.+++ ++..+++|..|+++|+++++|||+.+.+++++. +.++++++++.+|+.+||..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~ 155 (380)
T PF00999_consen 76 WRRALALGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDII 155 (380)
T ss_dssp --------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTT
T ss_pred cccccccccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccc
Confidence 9999999999999999887877774 233489999999999999999999999999655 48999999999999999999
Q ss_pred HHHHHHHHHHHH-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhccc
Q 001116 204 AIVVYQLFFQMV-LGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADV 282 (1152)
Q Consensus 204 aivlf~~~~~~~-~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~d~~~~i~ltl~~~y~~y~iaee~lg~ 282 (1152)
+++++.++.... .+...+.......+...++.++++|.+.+++..+..++..++...+..+++++++++|+++ |.+|.
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a-~~~g~ 234 (380)
T PF00999_consen 156 AIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLA-EILGL 234 (380)
T ss_dssp TTTTT---------------------------------------------------------------------------
T ss_pred hhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccc-ccccc
Confidence 999999988877 3334444444444444455556667777766544444433566788899999999999999 78899
Q ss_pred cchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchHHHHHHHHHHH
Q 001116 283 SGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFV 362 (1152)
Q Consensus 283 SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~ 362 (1152)
||+++++++|+.+++ ....++.++.++.+|+ .++++++|+++|+.++...+.. +...|...+++++..
T Consensus 235 s~~l~af~~Gl~~~~---~~~~~~~~~~l~~~~~---~~~~~lfF~~iG~~~~~~~l~~------~~~~~~~~~~~~~~~ 302 (380)
T PF00999_consen 235 SGILGAFIAGLILSN---SPFAERLEEKLESFWY---GFFIPLFFVFIGMSLDFSSLFN------SPSVIILVLLLLIAI 302 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccceeeeeehcccc---ccccchhhhcccchhh---HHHhhHHhhhhccccccccccc------chhhhhhHHHHHHHH
Confidence 999999999999973 3333445555667776 8999999999999998644310 134566667777788
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhhch-hhHHHHHHHhhhhcccCCCCcccccccceehhhhhhHHHhhhhh
Q 001116 363 QVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL-RGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIV 441 (1152)
Q Consensus 363 ~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~Gl-RGavslalAl~v~~~~~~~~~~~~~~~~~~vf~~~gvvllTlli 441 (1152)
+++|+++++...++ .+.+||++..++|++. ||.++++++......+ ... ..+...+..++++|+++
T Consensus 303 ~~~k~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~----~~~----~~~~~~~~~~vl~t~ii 369 (380)
T PF00999_consen 303 LLGKFIGVYLASRL-----FGIPWKEALFIGLGMLPRGEVSLALALIALNLG----IIS----EQMFTIIIAAVLLTIII 369 (380)
T ss_dssp -------------------------HHHHTTTTSS--HHHHHHHHHHHHH------------------------------
T ss_pred HHhhhceeehhhhh-----cccccchhHHHHHhhcCccHHHHHHHHHHHhcC----CCC----HHHHHHheeeeeeHHHH
Confidence 89999999654433 3789999999999988 9999999998776552 111 12345566789999999
Q ss_pred hhhcHHHHHhh
Q 001116 442 NGSTTQYILHL 452 (1152)
Q Consensus 442 ~g~t~~~ll~~ 452 (1152)
+|.+++++++|
T Consensus 370 ~~~~~~~l~~~ 380 (380)
T PF00999_consen 370 AGIILSPLLRK 380 (380)
T ss_dssp -----------
T ss_pred HHHHHHHHhcC
Confidence 99999999876
No 10
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.95 E-value=1.9e-25 Score=276.08 Aligned_cols=336 Identities=16% Similarity=0.131 Sum_probs=247.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhh
Q 001116 35 DAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESS 114 (1152)
Q Consensus 35 ~~ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~g 114 (1152)
+.++.++++++.+.++..++||+++|.+++++++|+++||..+|. +.+ ....+.+..+++.+++|..|
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~------i~~------~~~i~~laelGvv~LlF~iG 72 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRL------VTD------VESILHFAEFGVVLMLFVIG 72 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccC------CCC------HHHHHHHHHHHHHHHHHHHH
Confidence 367778888889999999999999999999999999999974432 111 11235678899999999999
Q ss_pred hcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcC-CChhHHHHH
Q 001116 115 FAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTII 193 (1152)
Q Consensus 115 l~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg-~~~~l~~ll 193 (1152)
+++|++.+|+..+.++.++..++++++++++.+.+++ +++|..++++|++++.|+++.++.+++|.+ ++++.++.+
T Consensus 73 LEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~---g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~ 149 (621)
T PRK03562 73 LELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLL---GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSA 149 (621)
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 9999999999999999999999999887766655443 789999999999999999999999999999 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc--chhHHHHHHHHHH
Q 001116 194 EGESLMNDGTAIVVYQLFFQMVLG-KSFGWGAIIKFLAQVSLGAVGMGLAFGI-ASVLWLGFIFN--DTVIEIALTLAVS 269 (1152)
Q Consensus 194 ~gESLlND~~aivlf~~~~~~~~~-~~~s~~~i~~~~~~~~lggi~iG~~~G~-~~~~~l~~~~~--d~~~~i~ltl~~~ 269 (1152)
.|-+++||..+++++.+...+... ...+.......+.. .++.+++.+++|+ +..+++++..+ .+...+..++.++
T Consensus 150 l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~lv 228 (621)
T PRK03562 150 FAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALK-VAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFLV 228 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 999999999999888876544432 22122221111111 1122222333333 33344444322 2334566677778
Q ss_pred HHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccc
Q 001116 270 YIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHG 349 (1152)
Q Consensus 270 y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~~~ 349 (1152)
+++.+++ +.+|+|.++|+|++|++++. +.++.+.+..++.| ..++.++||+.+|+.++...+ .
T Consensus 229 ~~~a~la-~~~Gls~~lGAFlAGl~l~~---~~~~~~le~~i~pf----~~lll~lFFi~vG~~id~~~l---------~ 291 (621)
T PRK03562 229 FGFGLLM-EEVGLSMALGAFLAGVLLAS---SEYRHALESDIEPF----KGLLLGLFFIAVGMSIDFGTL---------L 291 (621)
T ss_pred HHHHHHH-HHhCccHHHHHHHHHHHhcC---CccHHHHHHHHHHH----HHHHHHHHHHHhhhhccHHHH---------H
Confidence 8888888 88999999999999999975 33333334444444 467889999999999976443 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhh-chhhHHHHHHHhh
Q 001116 350 NSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLS 408 (1152)
Q Consensus 350 ~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~-GlRGavslalAl~ 408 (1152)
..|+.++.+.++.+++|+++++....+ .+.++++++.+++. ..+|..++.++..
T Consensus 292 ~~~~~il~~~~~~~~~K~~~~~~~~~~-----~g~~~~~a~~~gl~L~~~Gef~~vl~~~ 346 (621)
T PRK03562 292 ENPLRILILLLGFLAIKIAMLWLLARP-----LGVPRKQRRWFAVLLGQGGEFAFVVFGA 346 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHhHHHHHHHHHhccccHHHHHHHH
Confidence 234444555566789999998654433 37899999999995 5589988887644
No 11
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.95 E-value=4.1e-25 Score=272.67 Aligned_cols=334 Identities=18% Similarity=0.190 Sum_probs=246.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHh
Q 001116 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (1152)
Q Consensus 34 ~~~ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~ 113 (1152)
.+.+..+.++++.+.++..+++|+++|.+++++++|+++||..+| .+.+ ......+..+++.+++|..
T Consensus 4 ~~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg------~i~~------~~~i~~laelGvv~LLF~i 71 (601)
T PRK03659 4 SDLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLG------FISD------VDEILHFSELGVVFLMFII 71 (601)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhcccccc------CCCc------HHHHHHHHHHHHHHHHHHH
Confidence 455667778888888889999999999999999999999996433 2211 1123457789999999999
Q ss_pred hhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcC-CChhHHHH
Q 001116 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTI 192 (1152)
Q Consensus 114 gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg-~~~~l~~l 192 (1152)
|+++|++.+|+..+.++.++..++++++++++.+.+++ +++|..++++|.+++.|+++.+..+++|.| ..++.+++
T Consensus 72 GLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~---g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~ 148 (601)
T PRK03659 72 GLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLT---DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQL 148 (601)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence 99999999999999999999999999988777665543 889999999999999999999999999999 67789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc--hhHHHHHHHH
Q 001116 193 IEGESLMNDGTAIVVYQLFFQMVLGKSF--GWGAIIKFLAQVSLGAVGMGLAFG-IASVLWLGFIFND--TVIEIALTLA 267 (1152)
Q Consensus 193 l~gESLlND~~aivlf~~~~~~~~~~~~--s~~~i~~~~~~~~lggi~iG~~~G-~~~~~~l~~~~~d--~~~~i~ltl~ 267 (1152)
..|-.++||..+++++.++..+..++.. .+..+... +..+++.+++| ++..+++++..+. ....+..++.
T Consensus 149 ~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~ 223 (601)
T PRK03659 149 GFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMK-----VLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALL 223 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 9999999999888888776544432222 12111111 11111122233 3334444444322 2344556666
Q ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccc
Q 001116 268 VSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQN 347 (1152)
Q Consensus 268 ~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~ 347 (1152)
+++++.+++ +.+|+|+++++|++|+++++ +.++++.+..++.| ..++.+++|+.+|+.++...+
T Consensus 224 ~vl~~a~l~-~~~Gls~~LGAFlaGl~l~~---s~~~~~l~~~i~pf----~~lll~lFFi~vGm~id~~~l-------- 287 (601)
T PRK03659 224 LVLGSALFM-DALGLSMALGTFIAGVLLAE---SEYRHELEIAIEPF----KGLLLGLFFISVGMALNLGVL-------- 287 (601)
T ss_pred HHHHHHHHH-HHhCccHHHHHHHHHHHhcC---CchHHHHHHHHHHH----HHHHHHHHHHHHhhhccHHHH--------
Confidence 677777778 78999999999999999975 33444445555555 357889999999999976543
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHhh-hchhhHHHHHHHhhh
Q 001116 348 HGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVW-SGLRGAVALSLSLSV 409 (1152)
Q Consensus 348 ~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w-~GlRGavslalAl~v 409 (1152)
...|..++.+.++.+++|++.+++... .++.+|++++.++. .+.||.+++.++-..
T Consensus 288 -~~~~~~il~~~~~~l~~K~~~~~~~~~-----~~g~~~~~al~~g~~L~~~Gef~~vl~~~a 344 (601)
T PRK03659 288 -YTHLLWVLISVVVLVAVKGLVLYLLAR-----LYGLRSSERMQFAGVLSQGGEFAFVLFSAA 344 (601)
T ss_pred -HHhHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCHHHHHHHHHHHhccccHHHHHHHHH
Confidence 134555566667788999999864433 34789999988876 588999998877553
No 12
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.95 E-value=3.5e-25 Score=280.36 Aligned_cols=352 Identities=17% Similarity=0.165 Sum_probs=252.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCcccccccccccc----ChHHHHHHHHH
Q 001116 32 NPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASI----DPDLLLAVFLP 107 (1152)
Q Consensus 32 ~~~~~ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~----~p~l~~~ifLp 107 (1152)
+...+++.++++++++.++..+++|+++|..++++++|+++||..+|. +.......++. .-+.+..+++.
T Consensus 40 ~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~------i~~~~~~~fp~~~~~~l~~la~lGli 113 (832)
T PLN03159 40 SLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQ------SEVFANTIFPLRSVMVLETMANLGLL 113 (832)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCc------ChhhhhhcCCcchHHHHHHHHHHHHH
Confidence 344566678899999999999999999999999999999999975543 21111111111 24568889999
Q ss_pred HHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCC---CcHHHHHHhhhhccccCHHHHHHHHhhcC
Q 001116 108 ALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYD---WSWKTSLLLGGLLSATDPVAVVALLKELG 184 (1152)
Q Consensus 108 ~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~---~~~~~alllGails~TDpvaV~ailkelg 184 (1152)
+++|..|+++|++.+|++.+.++..|+.+++++.++...+.+++.... .....++++|.++|.|+...++.+++|+|
T Consensus 114 llmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elk 193 (832)
T PLN03159 114 YFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIK 193 (832)
T ss_pred HHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence 999999999999999999999999999999988665443333331100 12345788999999999999999999999
Q ss_pred -CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chh--H
Q 001116 185 -ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN-DTV--I 260 (1152)
Q Consensus 185 -~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~-d~~--~ 260 (1152)
+.+++++++.+.+++||.++++++.++..+..++......+ ..++..++..+++.+++..+..|+.++..+ ++. .
T Consensus 194 ll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l-~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~ 272 (832)
T PLN03159 194 LINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASL-WVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEF 272 (832)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccc
Confidence 68999999999999999999999988877654433222222 111111111111222223333333344322 222 3
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 001116 261 EIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILG 340 (1152)
Q Consensus 261 ~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~ 340 (1152)
.+.+++++.+++.+++ +.+|.|.++|+|++|++++. . +......+++-..+..++.+++|+.+|+.++...+.
T Consensus 273 ~v~~il~~vl~~a~la-e~~Gl~~ilGAFlaGl~lp~-~-----~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~ 345 (832)
T PLN03159 273 YICLILTGVMISGFIT-DAIGTHSVFGAFVFGLVIPN-G-----PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQ 345 (832)
T ss_pred hhHHHHHHHHHHHHHH-HHhCccHHHHHHHHhhccCC-c-----chHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhc
Confidence 4566677777777788 89999999999999999863 1 222445667777777899999999999999875542
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhh-chhhHHHHHHHhhh
Q 001116 341 NDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSV 409 (1152)
Q Consensus 341 ~~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~-GlRGavslalAl~v 409 (1152)
+...|..++++.++.+++|+++.++.. ..++++|++++.+++. ..||.+++.++...
T Consensus 346 -------~~~~~~~~~~liv~a~~gK~~g~~l~a-----~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig 403 (832)
T PLN03159 346 -------GPATWGLLVLVIIMASAGKIMGTIIIA-----FFYTMPFREGITLGFLMNTKGLVEMIVLNVG 403 (832)
T ss_pred -------CchHHHHHHHHHHHHHHHHHHHHHHHH-----HHhCCCHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 233455566667777899999885433 3358999999999995 77999999887653
No 13
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.94 E-value=3.3e-25 Score=249.08 Aligned_cols=268 Identities=17% Similarity=0.182 Sum_probs=211.0
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHHH
Q 001116 45 VLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKR 124 (1152)
Q Consensus 45 ~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk~ 124 (1152)
+++.+...++||+++|.+++++++|+++||...| .+.+. ..-+.+..+++.+++|.+|+++|++.+|+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg------~i~~~------~~~~~l~~igl~~llF~~Gl~~d~~~l~~ 69 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLG------LISNV------EGVNHLAEFGVILLMFLIGLELDLERLWK 69 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCccccc------CCCCh------HHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3455667888999999999999999999986432 11110 11355778999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHH
Q 001116 125 CLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTIIEGESLMNDGT 203 (1152)
Q Consensus 125 ~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg-~~~~l~~ll~gESLlND~~ 203 (1152)
+.+.++.++..+++++++++|+.+++.+ +++|..|+++|+++++|||..+.++++|++ .+++.++++.+++++||..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~ 147 (273)
T TIGR00932 70 LRKAAFGVGVLQVLVPGVLLGLLLGHLL--GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIA 147 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHH
Confidence 9999999999999999777787666655 789999999999999999999999999999 5789999999999999999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHhhhhcc
Q 001116 204 AIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN--DTVIEIALTLAVSYIAFFTAQEGAD 281 (1152)
Q Consensus 204 aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~--d~~~~i~ltl~~~y~~y~iaee~lg 281 (1152)
+++++.++.....+++.+...+...+...+++.++++++.+++..+..++..+ +....+.+++.++++.+.++ |.+|
T Consensus 148 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la-~~~g 226 (273)
T TIGR00932 148 VVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFA-DLLG 226 (273)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH-HHhC
Confidence 99999998877654443433443434444555566677777766656665443 34466788888899999899 8899
Q ss_pred ccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001116 282 VSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVI 334 (1152)
Q Consensus 282 ~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i 334 (1152)
.|+++|++++|+++++.. ..+. +.+..+.+..++.+++|+.+|+.+
T Consensus 227 ~s~~lgaf~aGl~~~~~~------~~~~-l~~~l~~~~~~f~plFF~~~G~~~ 272 (273)
T TIGR00932 227 LSMALGAFLAGVVLSESE------YRHK-LESDLEPIGGVLLPLFFISVGMSV 272 (273)
T ss_pred CcHHHHHHHHHHHHcCCc------hHHH-HHHHHHhHHHHHHHHHHHHhCccC
Confidence 999999999999997521 1122 334444455899999999999875
No 14
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.94 E-value=5.6e-24 Score=262.00 Aligned_cols=338 Identities=18% Similarity=0.149 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhh
Q 001116 36 AVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSF 115 (1152)
Q Consensus 36 ~ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl 115 (1152)
.+..++++++++.++..+++|+++|..++++++|+++||..+|. +.+ ....+.+..+++.+++|..|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~------~~~------~~~~~~la~lGli~llF~~Gl 74 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGF------VAD------TKLAPELAELGVILLMFGVGL 74 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccc------ccc------hHHHHHHHHHHHHHHHHHhHh
Confidence 45556788889999999999999999999999999999974432 111 112467889999999999999
Q ss_pred cCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcC-CChhHHHHHH
Q 001116 116 AMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTIIE 194 (1152)
Q Consensus 116 ~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg-~~~~l~~ll~ 194 (1152)
++|++.+|+..+..+..++.+++++++ +++++.+.+ +|+|..++++|+++|.|+++.++.+++|.| ++++.++++.
T Consensus 75 e~d~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l 151 (558)
T PRK10669 75 HFSLKDLMAVKSIAIPGAIAQIAVATL-LGMALSAVL--GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAI 151 (558)
T ss_pred cCCHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHH
Confidence 999999999877666666666666554 455554444 799999999999999999999999999999 7899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc---cCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHH
Q 001116 195 GESLMNDGTAIVVYQLFFQMVL---GKSFGWGAI----IKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDT--VIEIALT 265 (1152)
Q Consensus 195 gESLlND~~aivlf~~~~~~~~---~~~~s~~~i----~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~d~--~~~i~lt 265 (1152)
|.++++|..+++++.++..+.. ++..+.... ...+...++..++++++..++..+++++..+.. ......+
T Consensus 152 ~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~ 231 (558)
T PRK10669 152 GWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLSV 231 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 9999999999888877655432 122222111 111111111111122333333333344433222 2334444
Q ss_pred HHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccc
Q 001116 266 LAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIF 345 (1152)
Q Consensus 266 l~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~ 345 (1152)
+++++++.+.+.+.+|.|+++|+|++|++++. ....++..+... .+..++.+++|+.+|+.++...+.
T Consensus 232 l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~---~~~~~~~~~~~~----~~~~~f~plFFv~~G~~~d~~~l~----- 299 (558)
T PRK10669 232 LALALGIAFGAVELFDVSFALGAFFAGMVLNE---SELSHRAAHDTL----PLRDAFAVLFFVSVGMLFDPMILI----- 299 (558)
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC---ChhHHHHHHHHh----hHHHHHHHHHHHHhhhhcCHHHHH-----
Confidence 55555444333388999999999999999974 112222122111 234678999999999999764431
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhh-chhhHHHHHHHhhh
Q 001116 346 QNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSV 409 (1152)
Q Consensus 346 ~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~-GlRGavslalAl~v 409 (1152)
..+..++.+.++.+++|+++++....+ ++.+||+++.++.+ ..||.+++.++...
T Consensus 300 ----~~~~~~~~~~~~~~v~K~~~~~~~~~~-----~g~~~~~a~~~gl~l~~~Gef~lii~~~~ 355 (558)
T PRK10669 300 ----QQPLAVLATLAIIVFGKSLAAFFLVRL-----FGHSRRTALTIAASLAQIGEFAFILAGLG 355 (558)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhHHHHHHHHhcccchHHHHHHHH
Confidence 223334455566788999988644333 37789999999995 66999998877653
No 15
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.5e-22 Score=237.53 Aligned_cols=339 Identities=20% Similarity=0.234 Sum_probs=244.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhh
Q 001116 35 DAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESS 114 (1152)
Q Consensus 35 ~~ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~g 114 (1152)
..+..+.++++++.+...+++|+++|..++++++|+++||..++.. .+ ....-+.+.++++..|+|.+|
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~------~~-----~~~~i~~laelGvi~LlF~~G 74 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI------IE-----SSEIIELLAELGVVFLLFLIG 74 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc------CC-----chHHHHHHHHHhHHHHHHHHH
Confidence 3466677888888888899999999999999999999999322111 00 111235578899999999999
Q ss_pred hcCCHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcC-CChhHHHH
Q 001116 115 FAMEVHQIKRCLVQ-MILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTI 192 (1152)
Q Consensus 115 l~~d~~~lk~~~~~-illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg-~~~~l~~l 192 (1152)
+|+|.+.+|++.+. .+..+..++.+...+ |....+. .++++|..++++|++++.|+...+..+++|.| ..++.+++
T Consensus 75 LE~~~~~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~-~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~ 152 (397)
T COG0475 75 LEFDLERLKKVGRSVGLGVAQVGLTAPFLL-GLLLLLG-ILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQL 152 (397)
T ss_pred HCcCHHHHHHhchhhhhhHHHHHHHHHHHH-HHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 99999999999999 555555555554333 3222222 23899999999999999999999999999999 88999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh--cchhHHHHHHHHHH
Q 001116 193 IEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFG-IASVLWLGFIF--NDTVIEIALTLAVS 269 (1152)
Q Consensus 193 l~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G-~~~~~~l~~~~--~d~~~~i~ltl~~~ 269 (1152)
+.|-.+++|..+++++.+......++..+...++..+... ....++-+.+| ++..+++++.. ++....+..+++++
T Consensus 153 ~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~-~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~ 231 (397)
T COG0475 153 ILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAI-LAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLV 231 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999999999999998888766554433333322221 11111222324 44444455543 34556778888889
Q ss_pred HHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhccccccccccc
Q 001116 270 YIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAY-IANTLIFILSGVVIAEGILGNDKIFQNH 348 (1152)
Q Consensus 270 y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~-l~~~liFil~Gl~i~~~~l~~~~~~~~~ 348 (1152)
+.+-+++ |.+|.|.++++|.+|+.++. +... ++.+++-.+-+.+ ++-+++|+.+|+.++...+.
T Consensus 232 l~~a~l~-e~~gls~ilGAFlaGl~ls~---~~~~---~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~-------- 296 (397)
T COG0475 232 LGAAYLA-ELLGLSMILGAFLAGLLLSE---SEYR---KHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLL-------- 296 (397)
T ss_pred HHHHHHH-HHhChhHHHHHHHHHHHhcc---cccc---hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHh--------
Confidence 9988899 89999999999999999975 2222 1233333344455 99999999999999887652
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhh-chhhHHHHHHHhh
Q 001116 349 GNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLS 408 (1152)
Q Consensus 349 ~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~-GlRGavslalAl~ 408 (1152)
..+..++.+.++.++.|.++.+...... +.+++.+...+++ ..+|..+++++-.
T Consensus 297 -~~~~~~l~~~~~~i~~K~~~~~~~~~~~-----g~~~~~~~~~g~~~~~~ge~~~v~~~~ 351 (397)
T COG0475 297 -ENLLLILLLVALAILGKILGAYLAARLL-----GFSKRLALGIGLLLRQGGEFAFVLAGI 351 (397)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCcHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 3344467777888899999885443333 4677777777775 3477777766543
No 16
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1e-22 Score=218.39 Aligned_cols=391 Identities=17% Similarity=0.209 Sum_probs=282.8
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHH
Q 001116 41 GISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVH 120 (1152)
Q Consensus 41 ~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~ 120 (1152)
+.+.+.+.++..+-+++-+..+++-.+.|+++||...+..+.. ..++. +.-..-+.-+.|-+-+|.+|.+++..
T Consensus 20 ~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~-~wgn~-----d~it~ei~RvvLcvqvfava~eLPr~ 93 (467)
T KOG4505|consen 20 GFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPN-SWGNK-----DYITYEISRVVLCVQVFAVAMELPRA 93 (467)
T ss_pred hHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCc-cccCc-----chhhhhhhhhhHhHHHHHHHHhccHH
Confidence 3455566667677678888888999999999998644332211 11111 01123356677888899999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhc----CCChhHHHHHHHH
Q 001116 121 QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKEL----GASKKLNTIIEGE 196 (1152)
Q Consensus 121 ~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkel----g~~~~l~~ll~gE 196 (1152)
.+.++|+.++++-.+-..+..++.+.++|.++| ++++..++++++.+.+|||+...++..+- ..|.|+++++.+|
T Consensus 94 Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p-~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AE 172 (467)
T KOG4505|consen 94 YMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIP-NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAE 172 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHh
Confidence 999999999999999888888888889999998 89999999999999999999999998632 3799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHH
Q 001116 197 SLMNDGTAIVVYQLFFQMVLGKS-----FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIF----NDTVIEIALTLA 267 (1152)
Q Consensus 197 SLlND~~aivlf~~~~~~~~~~~-----~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~----~d~~~~i~ltl~ 267 (1152)
|..|||+|+.++-+.+.+...+. -+|. ....+...++ |.++|.++|++.+..+|+.. -|.......-++
T Consensus 173 SGcNDGMaipflflai~Ll~h~~~r~~~rdwv-~~~iLyec~f-g~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vv 250 (467)
T KOG4505|consen 173 SGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWV-CDNILYECFF-GCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVV 250 (467)
T ss_pred cCCCCCcchhHHHHHHHHHhcCchhccCCcee-hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999999999988887764321 1222 2223334444 46689999999888887643 245556677788
Q ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccc
Q 001116 268 VSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQN 347 (1152)
Q Consensus 268 ~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~ 347 (1152)
++++|-.++ +.+|++-.+-.|.||++++..+. ++.++++ .+.-+.+.-+++..+|++.|..+|...+.... .
T Consensus 251 l~lfc~gig-tiiGvddLl~sFfAGi~Fswd~w--Fsk~t~~--s~v~~viD~lls~sfF~yfGaiipwsqFn~s~---~ 322 (467)
T KOG4505|consen 251 LALFCMGIG-TIIGVDDLLVSFFAGIVFSWDEW--FSKKTKE--SRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSV---E 322 (467)
T ss_pred HHHHHhhhh-heechhHHHHHHHhhhhcchhHH--hhhhhhh--ccHHHHHHHHHHHHHHHHhccccchhhcCCcc---c
Confidence 888888888 89999999999999999986433 2222222 34556677789999999999999986653211 1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhhchhhHHHHHHHhhhhcccC-C--------CCc
Q 001116 348 HGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSG-G--------SSL 418 (1152)
Q Consensus 348 ~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~GlRGavslalAl~v~~~~~-~--------~~~ 418 (1152)
+...|-.+++.+.++++-|+-.++.+.|+..-. .+|||+++++|.|+-|.-++-.|+....... . +..
T Consensus 323 gl~vwrlvilsi~iif~RRip~v~l~kp~iPdi---kswkEALFvGhFGPIGVgAly~allar~~le~~ep~~~i~~~e~ 399 (467)
T KOG4505|consen 323 GLPVWRLVILSITIIFIRRIPAVYLMKPLIPDI---KSWKEALFVGHFGPIGVGALYYALLARKELETLEPEKSIYESET 399 (467)
T ss_pred CchHHHHHHHHHHHHHhcccceEEEeccCCcch---hhHHHHHHhccCCCccHHHHHHHHHHHhhhccCCcccccCCccc
Confidence 223455555555555666777777777765432 4899999999999999998888865432110 0 000
Q ss_pred ccccccceehhhhhhHHHhhhhhhhhcHHHHHh
Q 001116 419 ITSETGTLFVFFTGGIVFLTLIVNGSTTQYILH 451 (1152)
Q Consensus 419 ~~~~~~~~~vf~~~gvvllTlli~g~t~~~ll~ 451 (1152)
........+.-++..+|+.|++++|.+.+...-
T Consensus 400 ~~w~li~~iwpivsf~vlsSIiVHG~sv~~~tl 432 (467)
T KOG4505|consen 400 VFWTLIEIIWPIVSFTVLSSIIVHGSSVAMYTL 432 (467)
T ss_pred cchhhhhhhhhhhHHHHHHHHHhccchhhHHHH
Confidence 001111234556667899999999999987653
No 17
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.83 E-value=7e-20 Score=222.25 Aligned_cols=209 Identities=16% Similarity=0.163 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHh-ccchhHH-HhhhhHHHHHHHHHhhc
Q 001116 647 VVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKV-GLLEEKE-MLHLHDAVQSDLKRLLR 724 (1152)
Q Consensus 647 ~ii~e~~~~~~~A~k~L~~l~~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~~-G~lde~E-~~~L~~~i~~~lk~l~~ 724 (1152)
.+|+++++-++......+++|.+..++.++|+.+++|..+++++++|+++-|+. .-+||++ ...|.+++.+++++.+.
T Consensus 338 ~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 338 YLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred HHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 477889999999989999999999999999999999999999999999999987 2355555 77799999999998775
Q ss_pred CCCCCCCCChhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeE
Q 001116 725 NPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPV 804 (1152)
Q Consensus 725 ~p~~~~~~~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~ 804 (1152)
. ++++++|+|++.++..++.|+..++...+.|||+|++|||+++.||||.+|.+++...+.+| ......
T Consensus 418 ~----------~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~-~~~~~~ 486 (727)
T KOG0498|consen 418 L----------DLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGG-FFVVAI 486 (727)
T ss_pred H----------HHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCc-eEEEEE
Confidence 4 79999999999999999999999999999999999999999999999999999998877664 455779
Q ss_pred eCCCCccc-hhhhhcC-CCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 805 FTHGSNLG-LYEVLIG-KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 805 l~~G~~fG-E~~lL~~-~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
+++||+|| |+..+.. .|.++||+|.|.|+++.|++++|..+++++|.+..++++...+.+..
T Consensus 487 L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~ 550 (727)
T KOG0498|consen 487 LGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSH 550 (727)
T ss_pred ecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhh
Confidence 99999999 7787777 88899999999999999999999999999999999999977777765
No 18
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.77 E-value=1.6e-18 Score=197.33 Aligned_cols=213 Identities=17% Similarity=0.225 Sum_probs=180.6
Q ss_pred HHhhhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhchHHHHHHHHHHHHHHHHH-hccchhHHH-hhh
Q 001116 634 QLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEK-VGLLEEKEM-LHL 711 (1152)
Q Consensus 634 ~L~~fig~~~v~~~ii~e~~~~~~~A~k~L~~l~~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~-~G~lde~E~-~~L 711 (1152)
++.+|+....+...+|+++++-+..|.+--+++|.-..+...+|+...++..+.++++.|+++-|+ ++.+||++. ..|
T Consensus 433 ~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~L 512 (815)
T KOG0499|consen 433 QLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTL 512 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhc
Confidence 345666667888899999999999999999999999999999999999999999999999999995 555999862 223
Q ss_pred hHHHHHHHHHhhcCCCCCCCCChhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEE
Q 001116 712 HDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWT 791 (1152)
Q Consensus 712 ~~~i~~~lk~l~~~p~~~~~~~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~ 791 (1152)
...++.++. +.-| -..+.++.+|++++...+..++-.++...|.|||+||+.||.+..||||..|.|.|.
T Consensus 513 P~klq~dlA-i~V~---------y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVl 582 (815)
T KOG0499|consen 513 PTKLQLDLA-IDVN---------YSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVL 582 (815)
T ss_pred chhheeeee-EEee---------hhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEe
Confidence 333333332 1111 257899999999999999999999999999999999999999999999999999998
Q ss_pred EEeCCCcEEEEeEeCCCCccchhhhhc---CCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHH
Q 001116 792 SKSIRNKHSLHPVFTHGSNLGLYEVLI---GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQ 858 (1152)
Q Consensus 792 ~~~~~g~~~i~~~l~~G~~fGE~~lL~---~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~ 858 (1152)
...+ |+ .++.++..|++|||+++|. |.+|+|+|+|...|.++.++++|+.+++..||+-+.-+.+
T Consensus 583 GGp~-~~-~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrk 650 (815)
T KOG0499|consen 583 GGPD-GT-KVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRK 650 (815)
T ss_pred cCCC-CC-EEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHH
Confidence 6554 33 5578999999999999983 6789999999999999999999999999999987654433
No 19
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.74 E-value=3.7e-17 Score=184.68 Aligned_cols=184 Identities=15% Similarity=0.250 Sum_probs=157.4
Q ss_pred HHHHHHhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHhcc-chhHHHhh-hhHHHHHHHHHhhcCCCCCCCCChhhHHhc
Q 001116 663 LEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGL-LEEKEMLH-LHDAVQSDLKRLLRNPPLVKFPKISDLISA 740 (1152)
Q Consensus 663 L~~l~~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~~G~-lde~E~~~-L~~~i~~~lk~l~~~p~~~~~~~~~~lL~~ 740 (1152)
-.++|.....+.++|+.|+++..+..++.+|..++|.++. .||+|..+ |++.+..++. .+-| .+-|++
T Consensus 242 r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA-~nvh---------~dTLkk 311 (536)
T KOG0500|consen 242 RTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIA-INVH---------LDTLKK 311 (536)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhH-HHHH---------HHHHHh
Confidence 4455777888999999999999999999999999998777 66666444 5555555544 2222 467999
Q ss_pred CCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhh---
Q 001116 741 HPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL--- 817 (1152)
Q Consensus 741 ~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL--- 817 (1152)
+++|+++.+..+.+|+-.+++..|.|||+||++||.+..||||.+|.+.+...+ |.. +...+++|++|||++++
T Consensus 312 V~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dD--g~t-~~~~L~~G~~FGEisIlni~ 388 (536)
T KOG0500|consen 312 VRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADD--GVT-VFVTLKAGSVFGEISILNIK 388 (536)
T ss_pred hhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecC--CcE-EEEEecCCceeeeeEEEEEc
Confidence 999999999999999999999999999999999999999999999999997543 433 35689999999999998
Q ss_pred ---cCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHH
Q 001116 818 ---IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQ 859 (1152)
Q Consensus 818 ---~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~ 859 (1152)
.|.+|+|+++....+++++++++|+-+.+++||+-+..+.++
T Consensus 389 g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 389 GNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred CcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 467899999999999999999999999999999988777654
No 20
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.73 E-value=1.8e-16 Score=203.96 Aligned_cols=192 Identities=10% Similarity=0.134 Sum_probs=169.2
Q ss_pred HHHHHhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHhccchhHH-HhhhhHHHHHHHHHhhcCCCCCCCCChhhHHhcCC
Q 001116 664 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHP 742 (1152)
Q Consensus 664 ~~l~~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~~G~lde~E-~~~L~~~i~~~lk~l~~~p~~~~~~~~~~lL~~~p 742 (1152)
.+++.+..++.++|+.++++..+.+++++|+++.++..-+++++ ...|.+.+..++..... .++++++|
T Consensus 311 ~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~----------~~~l~~~~ 380 (823)
T PLN03192 311 MEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHLF----------LPVVEKVY 380 (823)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHHH----------HHHHhhCc
Confidence 45677778889999999999999999999999988775566555 55677777777665332 36789999
Q ss_pred CCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCc
Q 001116 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (1152)
Q Consensus 743 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r 822 (1152)
+|++++++.+..|+..++++.+.|||.|+.|||.++.+|||.+|.|++... .++++.++..+++|++|||.+++.+.|+
T Consensus 381 lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~-~~~~e~~l~~l~~Gd~FGE~~~l~~~p~ 459 (823)
T PLN03192 381 LFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDS-EGEKERVVGTLGCGDIFGEVGALCCRPQ 459 (823)
T ss_pred chhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEe-cCCcceeeEEccCCCEecchHHhcCCCC
Confidence 999999999999999999999999999999999999999999999999864 3455666789999999999999999999
Q ss_pred eeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 823 ~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
+++++|.++|+++.|++++|.++++++|+....+.+++..++.+
T Consensus 460 ~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~ 503 (823)
T PLN03192 460 SFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKE 503 (823)
T ss_pred CCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999998887764
No 21
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=5.5e-15 Score=157.76 Aligned_cols=362 Identities=18% Similarity=0.224 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhc
Q 001116 37 VIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFA 116 (1152)
Q Consensus 37 ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~ 116 (1152)
+--+...+.++.+.+.++.|+++|+.|+++++|+++||..+|+.. + .--...+.+++...|+|-.|+.
T Consensus 8 i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva------d------~~La~~LAelGViLLmFgvGLh 75 (408)
T COG4651 8 ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA------D------QTLAPELAELGVILLMFGVGLH 75 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc------c------hhHHHHHHHhhHHHHHHhcchh
Confidence 334556677788888899999999999999999999998776532 0 0112357889999999999999
Q ss_pred CCHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcC-CChhHHHH
Q 001116 117 MEVHQIKRCLVQMILLAGPGVMISTF---FLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTI 192 (1152)
Q Consensus 117 ~d~~~lk~~~~~illLav~gvlit~~---~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg-~~~~l~~l 192 (1152)
.+.+++..... +|++|.+.... ..|..+.+.. ||++...++||-.+|..++|..+.-++|-+ ++.+-+++
T Consensus 76 fslkdLLavk~----iAipgAl~qia~at~lg~gL~~~l--gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~i 149 (408)
T COG4651 76 FSLKDLLAVKA----IAIPGALAQIALATLLGMGLSSLL--GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRI 149 (408)
T ss_pred eeHHHHhhHHH----HhcchHHHHHHHHHHHHhHHHHHc--CCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceE
Confidence 99998876533 34455444332 2344444443 999999999999999999999999999888 78888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---cc-CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cchhHH
Q 001116 193 IEGESLMNDGTAIVVYQLFFQMV---LG-KSFGWGAIIKF----LAQVSLGAVGMGLAFGIASVLWLGF-IF--NDTVIE 261 (1152)
Q Consensus 193 l~gESLlND~~aivlf~~~~~~~---~~-~~~s~~~i~~~----~~~~~lggi~iG~~~G~~~~~~l~~-~~--~d~~~~ 261 (1152)
..|--++.|...++.. +.+.+. .| +...+...... +.+ ....+++++++|+-.+.|+-. .. ......
T Consensus 150 AiGwLiveDl~mVl~L-vllpa~a~~~g~~~~~~~~~~~~l~~Tl~K-v~af~alml~VgrrviPw~le~~a~tGsrElf 227 (408)
T COG4651 150 AIGWLIVEDLAMVLAL-VLLPALAGVLGQGDVGFATLLVDLGITLGK-VAAFIAIMLVVGRRLIPWILERVAATGSRELF 227 (408)
T ss_pred EEeehhHHHHHHHHHH-HHhHHHHhhhcccccccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 9999999997554444 433322 12 22222221111 112 233456788888766666533 21 223334
Q ss_pred HHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 001116 262 IALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGN 341 (1152)
Q Consensus 262 i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~ 341 (1152)
....++++...-+.+.+.+|+|--++++++||+++. +..+.+..+..-...+ .+..++|+.+|+..++.++.
T Consensus 228 ~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~e---selshraa~~slpLrd----aFaVlFFvsVGmlf~P~~l~- 299 (408)
T COG4651 228 TLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAE---SELSHRAAEDSLPLRD----AFAVLFFVSVGMLFDPMILI- 299 (408)
T ss_pred HHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcc---hhhhHHHHHhccCHHH----HHHHHHHHHhhhhcCcHHhh-
Confidence 455566666666666689999999999999999975 2333333333333333 56678999999998775542
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhhc-hhhHHHHHHHhhhhcccCCCCccc
Q 001116 342 DKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSG-LRGAVALSLSLSVKRSSGGSSLIT 420 (1152)
Q Consensus 342 ~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~G-lRGavslalAl~v~~~~~~~~~~~ 420 (1152)
.....++...++++.+|-+..|. +.+.+ +.+.+.++.++.+= --|..++.++-.--.. ...+
T Consensus 300 --------~~pl~vlatllii~~gKs~aaf~---ivr~F--g~~~~TaLtis~SLaqigEFsfIlaGLgi~l----~llp 362 (408)
T COG4651 300 --------QQPLAVLATLLIILFGKSVAAFF---IVRAF--GHPVRTALTISASLAQIGEFSFILAGLGIKL----NLLP 362 (408)
T ss_pred --------cchHHHHHHHHHHHhhhHHHHHH---HHHHh--CCcchHHHHHHHHHHhhhhHHHHHHHHhhhh----ccCc
Confidence 22233555566677777776542 23444 45666777666652 2566666655211111 1222
Q ss_pred ccccceehhhhhhHHHhhhhhhhhcHH
Q 001116 421 SETGTLFVFFTGGIVFLTLIVNGSTTQ 447 (1152)
Q Consensus 421 ~~~~~~~vf~~~gvvllTlli~g~t~~ 447 (1152)
+..++++ ....++++++|.....
T Consensus 363 ~~gr~Lv----lagailsIl~nPllf~ 385 (408)
T COG4651 363 EAGRDLV----LAGAILSILLNPLLFA 385 (408)
T ss_pred HHHHHHH----HHHHHHHHHHhHHHHH
Confidence 2223333 2356677777754433
No 22
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.69 E-value=4.1e-17 Score=184.38 Aligned_cols=184 Identities=16% Similarity=0.163 Sum_probs=161.7
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
+++.+....|+++|++++++++++||.+..|.+|+.|++|||+++++|++..|.+.|.+.+ .++..+++|.+|||
T Consensus 152 I~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g-----~ll~~m~~gtvFGE 226 (732)
T KOG0614|consen 152 IRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREG-----KLLGKMGAGTVFGE 226 (732)
T ss_pred HHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCC-----eeeeccCCchhhhH
Confidence 4567888899999999999999999999999999999999999999999999999999865 66789999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHhhhhcc
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 893 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~~~~~l~~ 893 (1152)
+++|.+++|+|+|+|.++|++|.|+|+.|+.+|.....-++.-+.++.+..+ +|.+++.+-+.++. +......
T Consensus 227 LAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~------~~q~l~Ee~L~Kia-D~le~~~ 299 (732)
T KOG0614|consen 227 LAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVP------LFQNLPEELLLKIA-DVLEEEY 299 (732)
T ss_pred HHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhccCCHHHHHHHH-HHHHHHh
Confidence 9999999999999999999999999999999998887777666666666655 67788888777766 6788889
Q ss_pred ccCCcEEEecCc---EEEEEEeeeeeeccccceeecCCcc
Q 001116 894 CLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAA 930 (1152)
Q Consensus 894 y~~g~~i~i~~~---~~~ILl~G~V~~~~~~~e~i~ap~~ 930 (1152)
|..|+.|+.+++ +|+|+-.|.|+.++.. |.-+.|..
T Consensus 300 Yd~g~yIirqge~G~~ffii~~G~V~vtq~~-e~~~q~~~ 338 (732)
T KOG0614|consen 300 YDAGEYIIRQGEKGDTFFIISKGTVKVTQQD-EGSTQPQE 338 (732)
T ss_pred hcCCceEEeecCCCCeEEEEecceEEEeecC-CCCCchhH
Confidence 999999999984 9999999999998755 43355554
No 23
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.9e-15 Score=189.34 Aligned_cols=388 Identities=16% Similarity=0.102 Sum_probs=262.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHH
Q 001116 32 NPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLF 111 (1152)
Q Consensus 32 ~~~~~ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF 111 (1152)
.....++++.+++++..++..++|+++.|..+..+++|+++||..+|.... .....++.....--+.+..+++..++|
T Consensus 20 ~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~--~~~~~f~~~s~~~l~~~~~lg~~~f~F 97 (769)
T KOG1650|consen 20 ALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPS--YMNTIFPKSSMIVLELLANLGFLFFLF 97 (769)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChh--hhhcccccchHHHHHHHHHHHHHHHHH
Confidence 344566678888889999999999999999999999999999876553221 111111111112235677777889999
Q ss_pred HhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHc----cCCCc----HHHHHHhhhhccccCHHHHHHHHhhc
Q 001116 112 ESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF----PYDWS----WKTSLLLGGLLSATDPVAVVALLKEL 183 (1152)
Q Consensus 112 ~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~----~~~~~----~~~alllGails~TDpvaV~ailkel 183 (1152)
..|+++|.+.++++.+..+.+|+.+++++......+...+. +..++ ...-...+.+.|.|.-..++.++.|+
T Consensus 98 l~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eL 177 (769)
T KOG1650|consen 98 LMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAEL 177 (769)
T ss_pred HHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHh
Confidence 99999999999999999999999998888655333333221 00111 11345566888999999999999999
Q ss_pred C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc-hh-
Q 001116 184 G-ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGL-AFGIASVLWLGFIFND-TV- 259 (1152)
Q Consensus 184 g-~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~-~~G~~~~~~l~~~~~d-~~- 259 (1152)
+ ..++++++....+++||.+++.++.+..........+.......+.. .++.+++.. ++-.+..|+.++...+ +.
T Consensus 178 kll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~ 256 (769)
T KOG1650|consen 178 KLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVL-VIGFVLFLFFVVRPLMKWIIKRTPEGKPVS 256 (769)
T ss_pred hchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHH-HHHHHHheeeehhhhHHHHhhcCCCCCccc
Confidence 9 78999999999999999999999988887766544322211111111 112121211 2222223333442212 12
Q ss_pred -HHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 001116 260 -IEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGI 338 (1152)
Q Consensus 260 -~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~ 338 (1152)
.++..++...+++.++.+...+.++++++++.|+.+.+.+ |-.....+++-.....++.++.|+..|+..+...
T Consensus 257 ~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~-----p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~ 331 (769)
T KOG1650|consen 257 DAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGP-----PLGSALIEKLEDLVSGLLLPLYFAISGLKTDISR 331 (769)
T ss_pred cceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCC-----chhHHHHHHHHHHHHHHHHHHHHHhhccceeHHH
Confidence 3456666666666667744445889999999999985422 3335666778888888999999999999886533
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhh-chhhHHHHHHHhhhhcccCCCC
Q 001116 339 LGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSVKRSSGGSS 417 (1152)
Q Consensus 339 l~~~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~-GlRGavslalAl~v~~~~~~~~ 417 (1152)
+ ..|.....+.....+++++++.+..- -++++|++++.++.. ..+|.+.+..--.....
T Consensus 332 i----------~~~~~~~~~i~~~~~~K~l~t~~~sl-----~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~----- 391 (769)
T KOG1650|consen 332 I----------NKWGALIRTILIFGAVKLLSTLGTSL-----YCKLPLRDSLALGLLMSTKGLVELIVLNTGLDR----- 391 (769)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhc-----
Confidence 2 12777777788888899998854332 348999999999985 66999887765443221
Q ss_pred cccccccceehhhhhhHHHhhhhhhhhcHHHHHhhcC
Q 001116 418 LITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLD 454 (1152)
Q Consensus 418 ~~~~~~~~~~vf~~~gvvllTlli~g~t~~~ll~~Lg 454 (1152)
+.+-.-++++.++..+++...+|+++..+-
T Consensus 392 -------~~~~~~~f~~~vl~alv~t~I~~~~l~~~y 421 (769)
T KOG1650|consen 392 -------KILSDEGFTVMVLMALVSTFITPPLLMFLY 421 (769)
T ss_pred -------CCcccchHHHHHHHHHHHHhhHHHHHHHhc
Confidence 222234555667777777777888877643
No 24
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.66 E-value=2.1e-16 Score=172.84 Aligned_cols=175 Identities=12% Similarity=0.167 Sum_probs=151.9
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~ 814 (1152)
.+.+++.-+|++|+++++.++++++.++.+++|+.|++||+.++.+|+|.+|.+.++..+ ..+..+++|..|||+
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~-----~~v~~~~~g~sFGEl 195 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG-----TYVTTYSPGGSFGEL 195 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC-----eEEeeeCCCCchhhh
Confidence 467899999999999999999999999999999999999999999999999999999874 446789999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHhhhhccc
Q 001116 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 894 (1152)
Q Consensus 815 ~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~~~~~l~~y 894 (1152)
+++++.||.+|++|.+++.+|.+++..|++++..+..-..+|+........- ++++...+-.+ +.+....+.|
T Consensus 196 ALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pi------l~~l~k~er~k-v~dal~~k~y 268 (368)
T KOG1113|consen 196 ALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPI------LESLEKLERAK-VADALGTKSY 268 (368)
T ss_pred HhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcchh------hHHHHHHHHHh-hhcccceeec
Confidence 9999999999999999999999999999999999999999999887776653 33333333333 3356777799
Q ss_pred cCCcEEEecCc---EEEEEEeeeeeecccc
Q 001116 895 LRGEIIEIPYH---CIGFLLEGFIKTHGLQ 921 (1152)
Q Consensus 895 ~~g~~i~i~~~---~~~ILl~G~V~~~~~~ 921 (1152)
..|+.++.++. .++||.+|+|...+.+
T Consensus 269 ~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~ 298 (368)
T KOG1113|consen 269 KDGERVIVQGDQGEHFYIIEEGEVDVLKKR 298 (368)
T ss_pred cCCceEEeccCCcceEEEecccccchhhcc
Confidence 99999988853 9999999999887644
No 25
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.59 E-value=1.8e-14 Score=158.55 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=131.8
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~ 814 (1152)
-++++.+|+|+.+++++++.+.+.++.+.|++|++|+++|++++++|+|.+|.|+++...+ |++..+..+++|++||+.
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~-~~~~~i~~~~~g~~~g~~ 84 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQ-DRETTLAILRPVSTFILA 84 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCC-CceEEEEEeCCCchhhhH
Confidence 3689999999999999999999999999999999999999999999999999999998764 445667899999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 815 ~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
+++.+.++.++++|.++|+++.||+++|.+++.++|.+...+.+.++.++.... +...++...+.+.+++
T Consensus 85 ~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~Rla 154 (236)
T PRK09392 85 AVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLV--KSLKNQKLRSSAERLA 154 (236)
T ss_pred HHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHhhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999888877642 3334555556666664
No 26
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.51 E-value=3.5e-13 Score=145.50 Aligned_cols=140 Identities=16% Similarity=0.114 Sum_probs=122.3
Q ss_pred CCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCC-Cce
Q 001116 745 RELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK-PYM 823 (1152)
Q Consensus 745 ~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~-~r~ 823 (1152)
+.+++++++.+.+.++.+.|++|++|+++|++++++|+|.+|.++++..+.+|++.....+++|++||+.+++.+. ++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 4589999999999999999999999999999999999999999999998888888888899999999999998864 688
Q ss_pred eEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 824 SDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 824 atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
++++|.++|+++.|++++|.+++.++|.+...+.+.++.++.... .....+...+.+++++
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~Rl~ 146 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTS--RKVGDLAFLDVTGRIA 146 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHhcChhhHHH
Confidence 899999999999999999999999999999999888887776532 2333555556665553
No 27
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.49 E-value=2.7e-13 Score=129.64 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=108.4
Q ss_pred CCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCc
Q 001116 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (1152)
Q Consensus 743 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r 822 (1152)
+|..+++++++.+.++++.+.+.+|++|+.+|++++++|+|.+|.++++..+.+|++.....+.+|++||+..++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 57899999999999999999999999999999999999999999999999998888888889999999999999988999
Q ss_pred eeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHH
Q 001116 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFL 856 (1152)
Q Consensus 823 ~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i 856 (1152)
.++++|.++|+++.|++++|.+++.++|.+...+
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999999999999999999999999999988765
No 28
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.43 E-value=2.7e-12 Score=137.85 Aligned_cols=145 Identities=23% Similarity=0.322 Sum_probs=126.5
Q ss_pred hcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhc
Q 001116 739 SAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLI 818 (1152)
Q Consensus 739 ~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~ 818 (1152)
...+.|..++++....+......+.+++|++|+++||+++++|+|.+|.++++..+.+|++.++..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 44567777778888888888899999999999999999999999999999999999999999899999999999999999
Q ss_pred CCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHH
Q 001116 819 GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALI 885 (1152)
Q Consensus 819 ~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll 885 (1152)
+.++.++++|.++|+++.+++++|.+++.++|.+...+.+.++.++.+.. .....+...+....+
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~--~~~~~~~~~~~~~r~ 147 (214)
T COG0664 83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQAL--ERLSLLARKDVEERL 147 (214)
T ss_pred CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHH--HHHHHHhhccHHHHH
Confidence 98999999999999999999999999996699999999999999998753 233344445555544
No 29
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.40 E-value=1.8e-12 Score=119.47 Aligned_cols=91 Identities=26% Similarity=0.366 Sum_probs=86.6
Q ss_pred EEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEEEeHH
Q 001116 761 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESD 840 (1152)
Q Consensus 761 ~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~l~~I~~~ 840 (1152)
++.|++|++|+++|++++++|+|.+|.+++...+.+++..+...+++|++||+.+++.+.++.++++|.++|+++.||++
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 80 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE 80 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence 46899999999999999999999999999999999998887889999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHH
Q 001116 841 KILSILRSDPA 851 (1152)
Q Consensus 841 ~f~~ll~~~p~ 851 (1152)
+|.++++++|+
T Consensus 81 ~~~~~~~~~p~ 91 (91)
T PF00027_consen 81 DFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHhCcC
Confidence 99999999985
No 30
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.39 E-value=3.6e-12 Score=139.44 Aligned_cols=113 Identities=17% Similarity=0.156 Sum_probs=106.3
Q ss_pred HhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEE
Q 001116 754 PLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVL 833 (1152)
Q Consensus 754 ~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~ 833 (1152)
.+.+.++.+.+++|++|+++||+++++|+|.+|.|+++..+.+|++.++..+.+|++||+.+++.+.+++++++|.++|+
T Consensus 26 ~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~ 105 (226)
T PRK10402 26 DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECW 105 (226)
T ss_pred HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEE
Confidence 47788999999999999999999999999999999999999899988889999999999999999999999999999999
Q ss_pred EEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 834 CFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 834 l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
++.+|+++|.+++.++|.+...+.+.++.++..
T Consensus 106 i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~ 138 (226)
T PRK10402 106 CLALPMKDCRPLLLNDALFLRKLCKFLSHKNYR 138 (226)
T ss_pred EEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888877654
No 31
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.39 E-value=4.2e-12 Score=139.64 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=121.9
Q ss_pred HhcCCCCCCCCccchhHhhccce-EEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhh
Q 001116 738 ISAHPLLRELPPSVREPLELSTK-EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEV 816 (1152)
Q Consensus 738 L~~~plF~~Ls~e~l~~L~~~~~-~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~l 816 (1152)
+++.+.|..+++++++.|....+ .+.+++|++|+++||+++++|+|.+|.|+++..+.+|++.+...+.+|++||+..+
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 45555555799999999999886 46899999999999999999999999999999998898888888999999999776
Q ss_pred hcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 817 LIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 817 L~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
+. .++.++++|.++|+++.||+++|++++.++|.+...+++.+..++.... +....+...+.+.+++
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~Rla 161 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQ--EMILLLSKKNAEERLA 161 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHH--HHHHHHhCCCHHHHHH
Confidence 54 4566789999999999999999999999999999999998888777532 2333444455555553
No 32
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.35 E-value=1e-11 Score=119.26 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=105.6
Q ss_pred CCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhh--cCC
Q 001116 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL--IGK 820 (1152)
Q Consensus 743 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL--~~~ 820 (1152)
+|.++++++++.+.+..+.+.+++|++|+++|++++++|+|.+|.++++..+.+|+......+++|++||+..++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 578999999999999999999999999999999999999999999999998888888888999999999999988 456
Q ss_pred CceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHH
Q 001116 821 PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLW 857 (1152)
Q Consensus 821 ~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~ 857 (1152)
++..++.|.++|.++.++.+++.+.+..++.+...+.
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 7888999999999999999999999999888765543
No 33
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.28 E-value=2.2e-11 Score=141.13 Aligned_cols=131 Identities=19% Similarity=0.331 Sum_probs=122.2
Q ss_pred ChhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccc
Q 001116 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (1152)
Q Consensus 733 ~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fG 812 (1152)
.+++++.++|.|+.|++++++.|...+....|.+||+|...|.+..++|+|.+|.|++...+ | .++..+..||.||
T Consensus 4 ~~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~--g--~v~~~~~~gdlFg 79 (610)
T COG2905 4 EPDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDG--G--EVLDRLAAGDLFG 79 (610)
T ss_pred CHHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCC--C--eeeeeeccCcccc
Confidence 45899999999999999999999999999999999999999999999999999999998654 4 3678999999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 001116 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRI 867 (1152)
Q Consensus 813 E~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~ 867 (1152)
-.+++++.+-...+.|.+|+.||.||++.|.+++.++|.+++++-.+.+.+++..
T Consensus 80 ~~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~ 134 (610)
T COG2905 80 FSSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDI 134 (610)
T ss_pred chhhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 9999998887888999999999999999999999999999999999999999853
No 34
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.27 E-value=3.5e-11 Score=127.97 Aligned_cols=118 Identities=16% Similarity=0.276 Sum_probs=102.6
Q ss_pred CceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCC--ceeEEEEcceEEEEEEeHHHHHH
Q 001116 767 GVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKP--YMSDMVTDSVVLCFFIESDKILS 844 (1152)
Q Consensus 767 Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~--r~atv~A~t~~~l~~I~~~~f~~ 844 (1152)
|+.|+++||+++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.+ +.++++|.++|+++.+|+++|++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 7899999999999999999999999999989998889999999999999998875 45789999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 845 ILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 845 ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
++.++|.+...+.+.++.++.... ...+.+...+.+++++
T Consensus 81 l~~~~p~l~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rla 120 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSRILQTE--MMIETLAHRDMGSRLV 120 (193)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHH--HHHHHHHhCCHHHHHH
Confidence 999999999999999988887632 3334555556666654
No 35
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.25 E-value=7.6e-12 Score=142.29 Aligned_cols=129 Identities=16% Similarity=0.261 Sum_probs=115.4
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCC-CcEEEEeEeCCCCccch
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIR-NKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~-g~~~i~~~l~~G~~fGE 813 (1152)
.++|+++|+|+++|++.+.++++++.+..|..|++|++||+.++.+|+|.+|.|++...... ++...+..++.||+|||
T Consensus 271 ~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE 350 (732)
T KOG0614|consen 271 MNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGE 350 (732)
T ss_pred HHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhH
Confidence 57999999999999999999999999999999999999999999999999999999988764 55566779999999999
Q ss_pred hhhhcCCCceeEEEEcce-EEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHH
Q 001116 814 YEVLIGKPYMSDMVTDSV-VLCFFIESDKILSILRSDPAVEDFLWQQSAIA 863 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~-~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~ 863 (1152)
-+++....|+|+++|... ++|+.|+++.|.+++....++.++-+..-.++
T Consensus 351 ~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~r~ 401 (732)
T KOG0614|consen 351 RALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEERR 401 (732)
T ss_pred HHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchhhh
Confidence 999999999999999988 99999999999999977777775554444333
No 36
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.24 E-value=1.1e-10 Score=128.03 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=108.6
Q ss_pred hhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEE
Q 001116 755 LELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLC 834 (1152)
Q Consensus 755 L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~l 834 (1152)
+....+.+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.+...+.+|++||+. .+.++.++++|.++|.+
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v 110 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTV 110 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEE
Confidence 566778899999999999999999999999999999999988988888899999999974 46778899999999999
Q ss_pred EEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 835 FFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 835 ~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
+.|++++|++++.++|.+...+++.+..++.... +....+...+.+.+++
T Consensus 111 ~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~--~~~~~l~~~~~~~Rla 160 (230)
T PRK09391 111 RLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQ--DHMLLLGRKTAMERVA 160 (230)
T ss_pred EEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHH--HHHHHHcCCCHHHHHH
Confidence 9999999999999999999999999988887532 2223444455555553
No 37
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.21 E-value=5.5e-11 Score=141.58 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=106.2
Q ss_pred ChhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccc
Q 001116 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (1152)
Q Consensus 733 ~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fG 812 (1152)
++.++++++|+|+++++++++.+..+++.+.|++|++|+++||.++++|+|.+|.|+++..+.+| +.++..+++|++||
T Consensus 5 ~~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG 83 (413)
T PLN02868 5 SVVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFG 83 (413)
T ss_pred HHHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEee
Confidence 35678999999999999999999999999999999999999999999999999999999988777 45677899999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHH
Q 001116 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAV 852 (1152)
Q Consensus 813 E~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l 852 (1152)
+. +.+.++.++++|.++|+++.|++++|..+...++-.
T Consensus 84 ~~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~ 121 (413)
T PLN02868 84 YG--LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSIWD 121 (413)
T ss_pred hh--hCCCCcccEEEECCCEEEEEEcHHHHhhhccccccc
Confidence 85 788999999999999999999999999887665433
No 38
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.18 E-value=2.9e-10 Score=121.91 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=99.6
Q ss_pred cceEEEEcCCceEEcCCC--CCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEE
Q 001116 758 STKEIMKLSGVTLYREGS--KPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCF 835 (1152)
Q Consensus 758 ~~~~~~~~~Ge~I~~eGe--~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~l~ 835 (1152)
..+.+.|++|++|+++|| +++++|+|.+|.|+++..+.+|++.+...+++|++||+.+++ +.++++++.|.++|+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 467789999999999999 779999999999999999999999999999999999997654 67889999999999999
Q ss_pred EEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 836 FIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 836 ~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
.|++++| +|.+...+.+.+..++.+.. ...+.+...+.+++++
T Consensus 84 ~i~~~~~------~~~~~~~l~~~l~~~~~~~~--~~~~~l~~~~~~~Rla 126 (202)
T PRK13918 84 VLNPALM------SAEDNLVLTQHLVRTLARAY--ESIYRLVGQRLKNRIA 126 (202)
T ss_pred EEEHHHc------ChhhHHHHHHHHHHHHHHHH--HHHHHHHhCchHHHHH
Confidence 9999987 57777777777777776532 3344555555666664
No 39
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.00 E-value=1.5e-07 Score=109.47 Aligned_cols=271 Identities=17% Similarity=0.208 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHhhhcC-------CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhcccc
Q 001116 99 DLLLAVFLPALLFESSFAM-------EVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSAT 171 (1152)
Q Consensus 99 ~l~~~ifLp~LLF~~gl~~-------d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~T 171 (1152)
+++-.....+..|..|+|+ +.+..||...++ +-|+.|+++++++ |+.+ +..-..+.---+|-++|
T Consensus 64 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~-~aAlGGm~vPali-----y~~~--n~~~~~~~~GW~Ip~AT 135 (423)
T PRK14853 64 TWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPV-AAALGGMIVPALI-----YVAV--NLAGGGALRGWAIPTAT 135 (423)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHH-HHHHHhHHHHHHH-----HHHH--hCCchhhhhhhhhhhhh
Confidence 3444555566678899999 677777777774 4678888887644 2222 11111222222677899
Q ss_pred CHHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 172 DPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVL 249 (1152)
Q Consensus 172 DpvaV~ailkelg--~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~ 249 (1152)
|-+.++.++..+| +|.+++..+.+-+.++|..|+++..+++ ++..++..... .++ ++++- +
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i~~~~L~~-----a~~----~~~~l----~ 198 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSELNLEALLL-----ALV----PLALF----W 198 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCCCHHHHHH-----HHH----HHHHH----H
Confidence 9999999999887 6999999999999999999999998877 44555543311 111 11111 1
Q ss_pred HHHH-HhcchhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcc-cc-----hhhHHHHHHHHHHHHHHH
Q 001116 250 WLGF-IFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTA-FK-----GESQQSLHYFWEMVAYIA 322 (1152)
Q Consensus 250 ~l~~-~~~d~~~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~-~~-----~~~~~~l~~fw~~i~~l~ 322 (1152)
.+++ ..++...+..+ ..+.++.. +..|++..+|.|++|+++....+.. .. +..++..+.+-..+.++.
T Consensus 199 ~l~~~~V~~~~~Y~il----g~~lW~~~-~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~I 273 (423)
T PRK14853 199 LLVQKRVRKWWLLLPL----GVATWILV-HESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVA 273 (423)
T ss_pred HHHHcCCchhhHHHHH----HHHHHHHH-HHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 1122 12222223232 33445455 6789999999999999996421111 00 113444556666677899
Q ss_pred HHHH-HHHhhhhhhh-hccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChhHHHHHhhh
Q 001116 323 NTLI-FILSGVVIAE-GILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVWS 395 (1152)
Q Consensus 323 ~~li-Fil~Gl~i~~-~~l~~~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~-----~~~~~~e~~vl~w~ 395 (1152)
.+++ |.-.|+.++. ..+. +...-...+.+.+.++++|+++++.+..+..+++ .+.+|++.+-++..
T Consensus 274 LPLFAFANaGV~l~~~~~~~-------~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L 346 (423)
T PRK14853 274 VPVFAFFSAGVAIGGLSGLG-------AALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALL 346 (423)
T ss_pred HHHHHHHHhhheecCchhHH-------HHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHH
Confidence 9999 9999999853 1110 0001124566778889999999988776665543 46778877665552
Q ss_pred chhhHHHHHHHhhh
Q 001116 396 GLRGAVALSLSLSV 409 (1152)
Q Consensus 396 GlRGavslalAl~v 409 (1152)
+.+.+.+++.+
T Consensus 347 ---~GIGFTmSlFI 357 (423)
T PRK14853 347 ---AGIGFTVSLLI 357 (423)
T ss_pred ---HHHHHHHHHHH
Confidence 23344444443
No 40
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.89 E-value=5.9e-09 Score=119.57 Aligned_cols=193 Identities=15% Similarity=0.198 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhchHHHHHHHHHHHHHHHHH--hccchhHHHhhhhHHHHHHHHHhh
Q 001116 646 SVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEK--VGLLEEKEMLHLHDAVQSDLKRLL 723 (1152)
Q Consensus 646 ~~ii~e~~~~~~~A~k~L~~l~~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~--~G~lde~E~~~L~~~i~~~lk~l~ 723 (1152)
..|+++|..+...-...|.. +.+.+|-.+++..+-+++.+|+-.-|. .|+-.|+ ...-..++++.
T Consensus 473 TTI~QQM~s~T~rYHeMlnn-------VReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeK----VL~~CPKDMkA-- 539 (971)
T KOG0501|consen 473 TTIIQQMTSNTNRYHEMLNN-------VREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEK----VLGYCPKDMKA-- 539 (971)
T ss_pred HHHHHHHHhhhHHHHHHHHH-------HHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHH----HhhhCcccccc--
Confidence 44677777766555444444 445688899999999999999987774 4444444 22222223332
Q ss_pred cCCCCCCCCChhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEe
Q 001116 724 RNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHP 803 (1152)
Q Consensus 724 ~~p~~~~~~~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~ 803 (1152)
.+...--++....+|-|.--++..++.|+-.+...+..|||.||+.||..|.++||++|..++...+ .++.
T Consensus 540 ----DICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDD-----EVVA 610 (971)
T KOG0501|consen 540 ----DICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDD-----EVVA 610 (971)
T ss_pred ----ceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecC-----cEEE
Confidence 0001112578899999999999999999999999999999999999999999999999999998766 5678
Q ss_pred EeCCCCccchhhhhcC--CCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHH
Q 001116 804 VFTHGSNLGLYEVLIG--KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQS 860 (1152)
Q Consensus 804 ~l~~G~~fGE~~lL~~--~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~l 860 (1152)
++|.||+||..---.+ ...-+.|+|+|+|.+..|.++.+.+.++-|..+...+-+++
T Consensus 611 ILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl 669 (971)
T KOG0501|consen 611 ILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNL 669 (971)
T ss_pred EeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhce
Confidence 9999999998743322 22456899999999999999999999998888876655443
No 41
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.74 E-value=1.1e-08 Score=113.08 Aligned_cols=111 Identities=15% Similarity=0.221 Sum_probs=102.9
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~ 814 (1152)
.++|+++|.++.|...+...+++.+..+.|++|+.|..+|+.++.+|+|.+|.|.+....+ | ..+ .++.|++|||.
T Consensus 239 ~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~-~--v~v-kl~~~dyfge~ 314 (368)
T KOG1113|consen 239 EPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRD-G--VEV-KLKKGDYFGEL 314 (368)
T ss_pred hhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccC-C--eEE-EechhhhcchH
Confidence 5789999999999999999999999999999999999999999999999999999987763 3 334 89999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhC
Q 001116 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSD 849 (1152)
Q Consensus 815 ~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~ 849 (1152)
+++.+.||.++|.|.+...|..++++.|+.++.-.
T Consensus 315 al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 315 ALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred HHHhhchhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 99999999999999999999999999999998543
No 42
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.34 E-value=0.00014 Score=83.71 Aligned_cols=255 Identities=16% Similarity=0.218 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhh-hhccc
Q 001116 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1152)
Q Consensus 99 ~l~~~ifLp~LLF~~gl~~d~~~l-------k~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllG-ails~ 170 (1152)
+++-.....+..|..|+|+....+ ||-.-| ++-|+.|+++++++ |..+..+-+ ...=| +|=.+
T Consensus 54 ~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP-~~aA~GGm~vPa~i-----y~~~n~~~~---~~~~GW~IP~A 124 (373)
T TIGR00773 54 HWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFP-VIAAIGGMIAPALI-----YLAFNANDP---ITREGWAIPAA 124 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HhheecCCC---cccCccccccH
Confidence 334445555667788998866554 333333 34566777766543 222211100 00111 56688
Q ss_pred cCHHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1152)
Q Consensus 171 TDpvaV~ailkelg--~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~ 248 (1152)
||.+-+..++.=+| +|..+...+..=++++|..|+++..++++ ++.++.... ++.. ++ +..
T Consensus 125 TDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~i~~~~L~-------~a~~--~~----~~l 187 (373)
T TIGR00773 125 TDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT----NDLSMAALL-------VAAV--AI----AVL 187 (373)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC----CCCCHHHHH-------HHHH--HH----HHH
Confidence 99888888876665 89999999999999999999998887763 344443221 1111 11 111
Q ss_pred HHHHHHh-cchhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHH-HHHHHHHHH
Q 001116 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEM-VAYIANTLI 326 (1152)
Q Consensus 249 ~~l~~~~-~d~~~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~-i~~l~~~li 326 (1152)
+.+++.. ++......+ ..+.++.. ...|++..+|.|++|+++....+.. .+-.+.+++.... +.++..|++
T Consensus 188 ~~~~~~~v~~~~~y~~l----gvllW~~~-~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~v~~lilPlF 260 (373)
T TIGR00773 188 AVLNRCGVRRLGPYMLV----GVILWFAV-LKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPWVAYLILPLF 260 (373)
T ss_pred HHHHHcCCchhhHHHHH----HHHHHHHH-HHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 2333321 222222222 22222223 4589999999999999997532211 1112334444333 557788999
Q ss_pred -HHHhhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChhHHHHHhh
Q 001116 327 -FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVW 394 (1152)
Q Consensus 327 -Fil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~-----~~~~~~e~~vl~w 394 (1152)
|.-.|+.++...+. ...++ ..+.+.+..+++|+++++....+..+++ .+.+|++.+-++.
T Consensus 261 AFanAGv~l~~~~~~-------~~~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~ 326 (373)
T TIGR00773 261 AFANAGVSLQGVSLN-------GLTSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV 326 (373)
T ss_pred HHHhcCeeeecCcch-------hhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 99999998542221 11223 3667788889999999988877766654 4677887766555
No 43
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.25 E-value=1e-06 Score=106.67 Aligned_cols=112 Identities=19% Similarity=0.215 Sum_probs=101.1
Q ss_pred HhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEE
Q 001116 754 PLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVL 833 (1152)
Q Consensus 754 ~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~ 833 (1152)
.+-..+.-....+|+.+|++||..|++|+|.+|.++-.....+|+..++..++.||.+|+.+++++.+|..|+.|.-+++
T Consensus 503 ~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~AvRdSe 582 (1158)
T KOG2968|consen 503 KLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAVRDSE 582 (1158)
T ss_pred hhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEEeehh
Confidence 34445667888999999999999999999999999988777777777788999999999999999999999999999999
Q ss_pred EEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 001116 834 CFFIESDKILSILRSDPAVEDFLWQQSAIALS 865 (1152)
Q Consensus 834 l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la 865 (1152)
+..||..-|..+..+||.+-.++.+-+++++.
T Consensus 583 lariPe~l~~~ik~ryP~v~~rl~~ll~~~~~ 614 (1158)
T KOG2968|consen 583 LARIPEGLLNFIKLRYPQVVTRLIKLLAEKIL 614 (1158)
T ss_pred hhhccHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 99999999999999999999888887777773
No 44
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.90 E-value=0.011 Score=67.74 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHH---HHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHH
Q 001116 32 NPTDAVIFVGISLVLGIACRH---LLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPA 108 (1152)
Q Consensus 32 ~~~~~ll~l~~~l~l~~~~~~---l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~ 108 (1152)
|....+....+++++|...++ +++++.+|.+|.==+++.++++..++. +.....+. ..-++.++.+|.
T Consensus 6 n~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~----~~~~~~fd---~~l~~~fmliFF-- 76 (404)
T COG0786 6 NALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGF----GGVSLNFD---TSLQDVFMLIFF-- 76 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhc----ceEEEeCC---cccccHHHHHHH--
Confidence 445567777888888888765 678999999987555555555543322 11111111 011233433332
Q ss_pred HHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHccCCCcHHHHHHhhhhcccc---CHHHHHHHHhhc
Q 001116 109 LLFESSFAMEVHQIKRCLVQMILLAGPGVMISTF--FLGAALKLTFPYDWSWKTSLLLGGLLSAT---DPVAVVALLKEL 183 (1152)
Q Consensus 109 LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~--~~g~~~~~l~~~~~~~~~alllGails~T---DpvaV~ailkel 183 (1152)
=..|+..++..+||-+++..+....++.+..+ .+|..+..+. +.+...+++.|+|--.- -.+|....+.+.
T Consensus 77 --ttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~l--gidpl~gllagsIsl~GGHGtaAA~~~~f~~~ 152 (404)
T COG0786 77 --ATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLL--GLDPLIGLLAGSISLVGGHGTAAAWGPTFEDL 152 (404)
T ss_pred --HHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHc--CccHHHHHHhcceeecCCCchHHHHHHHHHhc
Confidence 23589999999999998877665544444332 2333333332 55666677776654331 133334455555
Q ss_pred CCC
Q 001116 184 GAS 186 (1152)
Q Consensus 184 g~~ 186 (1152)
|++
T Consensus 153 G~~ 155 (404)
T COG0786 153 GAE 155 (404)
T ss_pred CCc
Confidence 543
No 45
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.70 E-value=0.0055 Score=71.85 Aligned_cols=267 Identities=16% Similarity=0.237 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhh-hhccc
Q 001116 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1152)
Q Consensus 99 ~l~~~ifLp~LLF~~gl~~d~~~l-------k~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllG-ails~ 170 (1152)
+++-..+..+..|..|+|+....+ ||-.-|+ +-|+.|+++++++ |+.+..+-+ . .=| +|-.+
T Consensus 70 ~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi-~AAlGGmivPAlI-----Y~~~n~~~~---~-~~GWgIPmA 139 (438)
T PRK14856 70 NWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPV-IAALGGMIAPGLI-----YFFLNADTP---S-QHGFGIPMA 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHH-HHHHhccHHHHHH-----HhheecCCC---c-cCccccccH
Confidence 344455566667888998765544 3333333 3566677766533 333311111 0 111 67788
Q ss_pred cCHHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1152)
Q Consensus 171 TDpvaV~ailkelg--~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~ 248 (1152)
||.+-++.++.=+| +|..+...+..=++++|..|+++..+|++ ++.++.... .+++++ + ..
T Consensus 140 TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L~-----~a~~~~--~------~l 202 (438)
T PRK14856 140 TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----TNLKFAWLL-----GALGVV--L------VL 202 (438)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCCcHHHHH-----HHHHHH--H------HH
Confidence 99998888886665 89999999999999999999999887763 344443321 111111 1 11
Q ss_pred HHHHHH-hcchhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccc----------------------h
Q 001116 249 LWLGFI-FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFK----------------------G 305 (1152)
Q Consensus 249 ~~l~~~-~~d~~~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~----------------------~ 305 (1152)
+.+++. .+....+..+. .+.++.- ..-|++.-+|-|+.|+++....+.+-. +
T Consensus 203 ~~ln~~~v~~~~~Y~~~G----~~lW~~~-l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (438)
T PRK14856 203 AVLNRLNVRSLIPYLLLG----VLLWFCV-HQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKE 277 (438)
T ss_pred HHHHHcCCccccHHHHHH----HHHHHHH-HHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccc
Confidence 222332 12222333322 2223222 335888889999999998763221000 0
Q ss_pred h---------------h-HHHHHHHH-HHHHHHHHHHH-HHHhhhhhhhhccccccccccccchHHHHHHHHHHHHHHHH
Q 001116 306 E---------------S-QQSLHYFW-EMVAYIANTLI-FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRL 367 (1152)
Q Consensus 306 ~---------------~-~~~l~~fw-~~i~~l~~~li-Fil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~~v~R~ 367 (1152)
+ . -+.+++.+ -.+.|+..++| |.-.|+.+..... ...-...+.+.+.++++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~---------~~~~pv~lGI~~GLvvGK~ 348 (438)
T PRK14856 278 QQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSIN---------LEVDKVLLGVILGLCLGKP 348 (438)
T ss_pred hhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchh---------hccCcHHHHHHHHHHhcch
Confidence 0 0 11222222 33444444443 4446776642211 0111244566788899999
Q ss_pred HHHHHHHHHHHhhC-----CCCChhHHHHHhhhchhhHHHHHHHhhh
Q 001116 368 FVVGTLYPVLRNFG-----YGLEWKEAIILVWSGLRGAVALSLSLSV 409 (1152)
Q Consensus 368 l~v~~~~p~l~~~~-----~~~~~~e~~vl~w~GlRGavslalAl~v 409 (1152)
++++....+..+++ .+.+|++.+-++. =+.+.+.+++.+
T Consensus 349 lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~---LaGIGFTmSLFI 392 (438)
T PRK14856 349 LGIFLITFISEKLKITARPKGISWWHILGAGL---LAGIGFTMSMFI 392 (438)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH---HHHHHHHHHHHH
Confidence 99988877766654 3567777665554 233445555444
No 46
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.70 E-value=0.00015 Score=88.39 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=96.5
Q ss_pred CCceEEcCCCCCCeeEEEeeeEEEEEEEeCCC------cEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEEEeH
Q 001116 766 SGVTLYREGSKPSGIWLISNGVVKWTSKSIRN------KHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIES 839 (1152)
Q Consensus 766 ~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g------~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~l~~I~~ 839 (1152)
..++|.++|+...++|+|..|.+.++....+- .......+++|+++|.+++++|.|..++++|.++|.+.++++
T Consensus 393 eitiiv~q~a~~~gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla~lt~e~S~~tirArsdt~v~~isr 472 (1158)
T KOG2968|consen 393 EITIIVEQGARDVGLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLAILTNEPSFITIRARSDTRVLFISR 472 (1158)
T ss_pred ceEEEEecccccceeeEEeecceeeeehhcccccccccccceEEEecCCceechhhhhcCCcceEEEEEecceEEEEeeH
Confidence 34558999999999999999999887544211 123345889999999999999999999999999999999999
Q ss_pred HHHHHHHhhCH----HHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEe
Q 001116 840 DKILSILRSDP----AVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLE 912 (1152)
Q Consensus 840 ~~f~~ll~~~p----~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~ 912 (1152)
++|.+++.++| .+.+.+.+.+...+.++ . ...--.....|+.+-.+++ ..||++.
T Consensus 473 s~l~~~~~~~p~I~L~ia~svl~~lsp~lr~~---------D---------~AldWv~l~~g~alyrqgD~Sd~iyvVl~ 534 (1158)
T KOG2968|consen 473 SDLERFLDAEPLIYLRIAHSVLRRLSPFLRKL---------D---------FALDWVRLEPGQALYRQGDSSDSIYVVLN 534 (1158)
T ss_pred HHHHHHHHhCceEEEehhhHHHHhcCHHHhhh---------h---------hhcceEEeccccHHHhcCCccCcEEEEec
Confidence 99999999999 44444444333333321 0 0011112233443333333 6789999
Q ss_pred eeeeecc
Q 001116 913 GFIKTHG 919 (1152)
Q Consensus 913 G~V~~~~ 919 (1152)
|.++...
T Consensus 535 GRlRsv~ 541 (1158)
T KOG2968|consen 535 GRLRSVI 541 (1158)
T ss_pred Ceehhhh
Confidence 9988654
No 47
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.65 E-value=0.01 Score=69.41 Aligned_cols=264 Identities=14% Similarity=0.209 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhh-hhccc
Q 001116 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1152)
Q Consensus 99 ~l~~~ifLp~LLF~~gl~~d~~~l-------k~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllG-ails~ 170 (1152)
+++-.....+..|..|+|+....+ ||-.-|+ +-|+.|+++++++ |+.+..+-+ . .=| +|-.+
T Consensus 65 ~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPi-iAAlGGmivPAlI-----y~~~n~~~~--~--~~GWgIPmA 134 (423)
T PRK14855 65 HWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAV-VAALGGMLVPAAL-----YTALNAGGP--G--ASGWGVPMA 134 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHH-HHHHhchHHHHHH-----HheeecCCC--c--cCccccccH
Confidence 334445555667788998866554 3333333 3566677666533 333321211 0 112 67788
Q ss_pred cCHHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1152)
Q Consensus 171 TDpvaV~ailkelg--~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~ 248 (1152)
||.+-+++++.=+| +|..+...+..=++++|..|+++..+|++ ++.++.... ++..++++ .
T Consensus 135 TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L~-------~a~~~~~~------l 197 (423)
T PRK14855 135 TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----SGLNLLALL-------LAALTWAL------A 197 (423)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----CCCCHHHHH-------HHHHHHHH------H
Confidence 99998888887666 89999999999999999999998887763 444443321 11111111 1
Q ss_pred HHHHHH-hcchhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcc--c----------------------
Q 001116 249 LWLGFI-FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTA--F---------------------- 303 (1152)
Q Consensus 249 ~~l~~~-~~d~~~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~--~---------------------- 303 (1152)
+++++. .+....+..+. .+.++.- ..-|++.-+|-|+.|+++....+.. +
T Consensus 198 ~~ln~~~v~~~~~Y~~~G----~~lW~~~-l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (423)
T PRK14855 198 LLAGRLGVTSLKIYAVLG----ALLWFFV-LKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRD 272 (423)
T ss_pred HHHHHcCCccccHHHHHH----HHHHHHH-HHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHh
Confidence 222332 12222232222 2223222 3358899999999999986531110 0
Q ss_pred -c-------hhhHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 304 -K-------GESQQSLHYFWEMVAYIANTLI-FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLY 374 (1152)
Q Consensus 304 -~-------~~~~~~l~~fw~~i~~l~~~li-Fil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~ 374 (1152)
. ...++.-|.+--.++|+..++| |.-.|+.+... . + -...+.+.+.++++|+++++...
T Consensus 273 ~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~-----~-~------~pv~lGI~~GLvvGK~lGI~~~s 340 (423)
T PRK14855 273 LEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGG-----G-L------GTVSLGVFLGLLLGKPLGVVGGA 340 (423)
T ss_pred hhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCC-----C-C------CcHHHHHHHHHHhcchHHHHHHH
Confidence 0 0012222223333444444443 44466665321 0 1 12455677888999999998887
Q ss_pred HHHHhhC-----CCCChhHHHHHhhhchhhHHHHHHHhhh
Q 001116 375 PVLRNFG-----YGLEWKEAIILVWSGLRGAVALSLSLSV 409 (1152)
Q Consensus 375 p~l~~~~-----~~~~~~e~~vl~w~GlRGavslalAl~v 409 (1152)
.+..+++ .+.+|++.+-+++. +.+.+.+++.+
T Consensus 341 ~lavkl~~a~lP~g~~w~~l~gv~~L---aGIGFTmSLFI 377 (423)
T PRK14855 341 WLAVRLGLASLPRRVNWLHMLGAGLL---AGIGFTMSLFI 377 (423)
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHH---HHHHHHHHHHH
Confidence 7766654 36677776655552 22344444443
No 48
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.58 E-value=0.0072 Score=69.55 Aligned_cols=267 Identities=14% Similarity=0.186 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhh-hhccc
Q 001116 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1152)
Q Consensus 99 ~l~~~ifLp~LLF~~gl~~d~~~l-------k~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllG-ails~ 170 (1152)
+++-.....+..|..|+|+..... ||-.-|+ +-|+.|+++++++ |..+. .+ ....=| +|-.+
T Consensus 58 ~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~-~AAlGGmivPAlI-----y~~~n--~~--~~~~~GW~IP~A 127 (383)
T PRK14854 58 HWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPA-IAAFAGLAMPSLI-----YLSIN--HD--IKVINGWAIPSA 127 (383)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHhchHHHHHH-----HHhhc--cC--CcccCccccccH
Confidence 344445555666788998765544 3333333 4567777776543 22221 11 111111 56788
Q ss_pred cCHHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1152)
Q Consensus 171 TDpvaV~ailkelg--~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~ 248 (1152)
||.+-++.++.=+| +|..+...+..=++++|..|+++..+|++ ++.++.... ++...++++
T Consensus 128 TDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L~-------~A~~~~~~l------ 190 (383)
T PRK14854 128 TDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT----KSLSLLSLS-------LGTLFILAM------ 190 (383)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCccHHHHH-------HHHHHHHHH------
Confidence 99988888876665 89999999999999999999998887763 445443221 111111111
Q ss_pred HHHHHH--hcchhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 001116 249 LWLGFI--FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI 326 (1152)
Q Consensus 249 ~~l~~~--~~d~~~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~li 326 (1152)
..+++. .+....+..+. .+.++.- ..-|++.-+|-|+.|+++....+..-+| .++.-|.+-..++|+..++|
T Consensus 191 ~~~nr~~~v~~~~~Y~~~G----~~lW~~~-l~SGvHaTiAGV~~a~~iP~~~~~~~~p-l~rleh~L~p~v~~~IlPlF 264 (383)
T PRK14854 191 IICNRIFKINRSSVYVVLG----FFAWFCT-IKSGVHATLAGFTTALCIPFRENDKDSP-ANFMEDSLHPWIIYFILPVF 264 (383)
T ss_pred HHHHHhcCCceehHHHHHH----HHHHHHH-HHhcccHHHHHHHHHHhcccCCCCCCCH-HHHHHHHhhchHHHhhHHHH
Confidence 122221 22222333322 2223222 3358899999999999987532211122 12233344444556555554
Q ss_pred -HHHhhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChhHHHHHhhhchhhH
Q 001116 327 -FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVWSGLRGA 400 (1152)
Q Consensus 327 -Fil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~-----~~~~~~e~~vl~w~GlRGa 400 (1152)
|.-.|+.+....+. . ..-...+.+.+.++++|+++++....+..+++ .+.+|++.+-++.. +.
T Consensus 265 A~aNAGV~l~~~~~~--~------~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L---~G 333 (383)
T PRK14854 265 AFANAGISFSGISFS--I------LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLL---CG 333 (383)
T ss_pred HhhcCCeeeccCcHH--h------hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH---HH
Confidence 55567766321110 0 01123456677889999999988777665543 46778877665552 23
Q ss_pred HHHHHHhhh
Q 001116 401 VALSLSLSV 409 (1152)
Q Consensus 401 vslalAl~v 409 (1152)
+.+.+++.+
T Consensus 334 IGFTmSLFI 342 (383)
T PRK14854 334 IGFTMSLFI 342 (383)
T ss_pred HHHHHHHHH
Confidence 344444443
No 49
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.56 E-value=0.0064 Score=70.31 Aligned_cols=269 Identities=16% Similarity=0.221 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhh-hhccc
Q 001116 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1152)
Q Consensus 99 ~l~~~ifLp~LLF~~gl~~d~~~l-------k~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllG-ails~ 170 (1152)
+++-.....+..|..|+|+....+ ||-.-|+ +-|+.|+++++++ |+.+..+-+ ...=| +|-.+
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi-~AAlGGmivPAlI-----y~~~n~g~~---~~~~GWgIPmA 131 (389)
T PRK09560 61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPA-IAAVGGMVVPALI-----YAAFNYNNP---ETLRGWAIPAA 131 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHhchHHHHHH-----HheeecCCC---cccCccccccH
Confidence 344455556667888999865554 3333333 4567777776543 222211100 00011 56678
Q ss_pred cCHHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1152)
Q Consensus 171 TDpvaV~ailkelg--~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~ 248 (1152)
||.+-+++++.=+| +|..+...+..=++++|..|+++..++++ ++.++.... .++++ ++ ..
T Consensus 132 TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~i~~~~L~-----~a~~~--~~------~l 194 (389)
T PRK09560 132 TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----SDLSLPALA-----LAAIA--IA------VL 194 (389)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCCCHHHHH-----HHHHH--HH------HH
Confidence 99998888887665 89999999999999999999998887763 344443321 01111 11 11
Q ss_pred HHHHHH-hcchhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHH
Q 001116 249 LWLGFI-FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFK-GESQQSLHYFWEMVAYIANTLI 326 (1152)
Q Consensus 249 ~~l~~~-~~d~~~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~-~~~~~~l~~fw~~i~~l~~~li 326 (1152)
+++++. .++...+..+- .+.++.- ..-|++.-+|-|+.|+++....+.... ...++.-|.+-..++|+..++|
T Consensus 195 ~~ln~~~v~~~~~Y~~~G----~~lW~~~-l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlF 269 (389)
T PRK09560 195 FLLNRLGVTKLTPYLIVG----AILWFAV-LKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLF 269 (389)
T ss_pred HHHHHcCCccchHHHHHH----HHHHHHH-HHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHH
Confidence 222332 12222333322 2222222 335889999999999999763222211 1123333444444556555554
Q ss_pred -HHHhhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChhHHHHHhhhchhhH
Q 001116 327 -FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVWSGLRGA 400 (1152)
Q Consensus 327 -Fil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~-----~~~~~~e~~vl~w~GlRGa 400 (1152)
|.-.|+.+....+. . ..-+..+.+.+.++++|+++++.+..+..+++ .+.+|++.+-++. =|.
T Consensus 270 AlaNAGV~l~~~~~~-------~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~---L~G 338 (389)
T PRK09560 270 AFANAGVSLAGISLS-------S-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV---LCG 338 (389)
T ss_pred HhhcCCeeecCCcHH-------h-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH---HHH
Confidence 45567766321111 0 11123456778889999999998887776654 3567777665554 223
Q ss_pred HHHHHHhhh
Q 001116 401 VALSLSLSV 409 (1152)
Q Consensus 401 vslalAl~v 409 (1152)
+.+.+++.+
T Consensus 339 IGFTmSLFI 347 (389)
T PRK09560 339 IGFTMSLFI 347 (389)
T ss_pred HHHHHHHHH
Confidence 344444443
No 50
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.019 Score=63.90 Aligned_cols=259 Identities=17% Similarity=0.206 Sum_probs=142.1
Q ss_pred HHHhhhcCCHHHHHHh---hhhH---HHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhc
Q 001116 110 LFESSFAMEVHQIKRC---LVQM---ILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKEL 183 (1152)
Q Consensus 110 LF~~gl~~d~~~lk~~---~~~i---llLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkel 183 (1152)
.+..|+|+....+.-. +++. .+-|..|+++++. +|+.+..+-| ...=-=+|-++||.+-+..++.=+
T Consensus 75 Fl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl-----iy~~~n~~~p--~~~~GWaIP~ATDiAFAlGvlaLL 147 (390)
T COG3004 75 FLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL-----IYLALNAGDP--ATLEGWAIPMATDIAFALGVLALL 147 (390)
T ss_pred HHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh-----HhheeecCCh--hhhcCcCcccHHHHHHHHHHHHHh
Confidence 3456777766555322 2222 2335555555542 2333322222 111111677899999999988877
Q ss_pred C--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 001116 184 G--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIE 261 (1152)
Q Consensus 184 g--~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~d~~~~ 261 (1152)
| +|..+.-.+..=++++|.-|+++..++.+ ...++... ..+++ ++..+ ..+++. + +..
T Consensus 148 G~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~Ls~~al-------~~a~~----~i~vL--~~lN~~-~--v~~ 207 (390)
T COG3004 148 GSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TDLSMAAL-------GIAAL----AIAVL--AVLNRL-G--VRR 207 (390)
T ss_pred cCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CCccHHHH-------HHHHH----HHHHH--HHHHHh-C--chh
Confidence 6 89999999999999999999998887763 34444322 11111 11111 122222 1 111
Q ss_pred HHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhccc
Q 001116 262 IALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI-FILSGVVIAEGILG 340 (1152)
Q Consensus 262 i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~li-Fil~Gl~i~~~~l~ 340 (1152)
...-+++....++.- .--|++.-+|-|+.|+++.-..+..-+| .++.-|..-..++|+..+++ |.-.|+.+.-..+
T Consensus 208 l~~Y~~~gviLW~~v-lkSGVHATLAGVi~~f~IPl~~k~~~sp-l~~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~~- 284 (390)
T COG3004 208 LSPYLLVGVILWIAV-LKSGVHATLAGVILAFFIPLKTKEGESP-LERLEHALHPWVAFFILPLFAFANAGVSLQGVSL- 284 (390)
T ss_pred hhHHHHHHHHHHHHH-HHhhhHHHHHHHHHHeeeeccCCCCCCc-HHHHHHHhhhhHHHHHHHHHHHccCCcccccccc-
Confidence 222223333333222 3347778888888888876543332232 12233333344566666665 6667877642111
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCChhHHHHHhh-hchhhHHHHHH
Q 001116 341 NDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-----GYGLEWKEAIILVW-SGLRGAVALSL 405 (1152)
Q Consensus 341 ~~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~-----~~~~~~~e~~vl~w-~GlRGavslal 405 (1152)
+...-...+.+.+..+++|.++++.++..--++ ..+.+|++.+-++. +|+-=++++-.
T Consensus 285 -------~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI 348 (390)
T COG3004 285 -------SGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFI 348 (390)
T ss_pred -------cccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHH
Confidence 111223345667788899999998877654443 45788888776665 44433344433
No 51
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.42 E-value=0.01 Score=68.56 Aligned_cols=268 Identities=15% Similarity=0.204 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhh-hhccc
Q 001116 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1152)
Q Consensus 99 ~l~~~ifLp~LLF~~gl~~d~~~l-------k~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllG-ails~ 170 (1152)
+++-.....+..|..|+|+....+ ||-.-|+ +-|+.|+++++++ |+.+..+-+ ...=| +|-.+
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi-~AAlGGmivPAli-----y~~~n~~~~---~~~~GWaIP~A 131 (388)
T PRK09561 61 LWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPV-IAAIGGMLVPALI-----YLLFNYADP---VTREGWAIPAA 131 (388)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHH-HHHHhchHHHHHH-----HhheecCCC---cccCccccccH
Confidence 334445556667888999866554 3333333 4567777776543 222211100 00111 56678
Q ss_pred cCHHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1152)
Q Consensus 171 TDpvaV~ailkelg--~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~ 248 (1152)
||.+-++.++.=+| +|..+...+..=++++|..|+++..++++ ++.++.... ++..++++ .
T Consensus 132 TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L~-------~a~~~~~~------l 194 (388)
T PRK09561 132 TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT----SDLSMVSLG-------VAAVAIAV------L 194 (388)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCccHHHHH-------HHHHHHHH------H
Confidence 99988888886555 89999999999999999999998887763 455543221 11111111 1
Q ss_pred HHHHHH-hcchhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHH-
Q 001116 249 LWLGFI-FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI- 326 (1152)
Q Consensus 249 ~~l~~~-~~d~~~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~li- 326 (1152)
+.+++. .+....++.+. .+.++.- ..-|++.-+|-|+.|+++....+..-+| .++.-|.+--.+.|+..++|
T Consensus 195 ~~ln~~~v~~~~~Y~~~G----~~lW~~~-l~SGvHaTiAGV~la~~iP~~~~~~~~p-l~rleh~L~p~v~~~IlPlFA 268 (388)
T PRK09561 195 AVLNLCGVRRTSVYILVG----VVLWVAV-LKSGVHATLAGVIVGFFIPLKEKHGRSP-AERLEHGLHPWVAFLILPLFA 268 (388)
T ss_pred HHHHHcCCccchHHHHHH----HHHHHHH-HHccccHHHHHHHHHhhccccCCCCCCH-HHHHHHHhhhhhhheeHHHHH
Confidence 222332 12222333322 2222222 3358899999999999987632221122 23333444444556455544
Q ss_pred HHHhhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChhHHHHHhhhchhhHH
Q 001116 327 FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVWSGLRGAV 401 (1152)
Q Consensus 327 Fil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~-----~~~~~~e~~vl~w~GlRGav 401 (1152)
|.-.|+.+....+. . ..-.....+.+.++++|+++++....+..+++ .+.+|++.+-++. =+.+
T Consensus 269 faNAGV~l~~~~~~--~------~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~---L~GI 337 (388)
T PRK09561 269 FANAGVSLQGVTLD--G------LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV---LCGI 337 (388)
T ss_pred hhcCCeeeccCcHH--h------hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH---HHHH
Confidence 55567766321110 0 01123456677888999999988877766654 3567877765554 2233
Q ss_pred HHHHHhhh
Q 001116 402 ALSLSLSV 409 (1152)
Q Consensus 402 slalAl~v 409 (1152)
.+.+++.+
T Consensus 338 GFTmSLFI 345 (388)
T PRK09561 338 GFTMSIFI 345 (388)
T ss_pred HHHHHHHH
Confidence 44444433
No 52
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=97.35 E-value=0.0014 Score=75.35 Aligned_cols=259 Identities=16% Similarity=0.199 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccC
Q 001116 99 DLLLAVFLPALLFESSFAMEVHQIKRC------LVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATD 172 (1152)
Q Consensus 99 ~l~~~ifLp~LLF~~gl~~d~~~lk~~------~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TD 172 (1152)
+++-.....+..|..|+|+......-. ..-.++-|+.|++++++ +|..+..+-+ ...-==+|-.+||
T Consensus 57 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-----Iyl~~n~~~~--~~~~GW~IP~ATD 129 (378)
T PF06965_consen 57 HWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-----IYLAFNAGGP--EAAHGWAIPMATD 129 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-----HHGGG--SST--THHHHTSSSS---
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-----HHheeecCCC--CcCceEEeccccc
Confidence 445556666677888999765544211 11223456666666553 3333321222 1111116788999
Q ss_pred HHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 173 PVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLW 250 (1152)
Q Consensus 173 pvaV~ailkelg--~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~ 250 (1152)
.+-+++++.=+| +|..+...+..=+.++|..|+++..++++ ++.++.... .+..++++ .+.
T Consensus 130 IAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~i~~~~L~-------~a~~~~~~------l~~ 192 (378)
T PF06965_consen 130 IAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----DGISLLWLL-------LAAAALLL------LFV 192 (378)
T ss_dssp HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------HHHHH-------HHHHHHHH------HHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CCCCHHHHH-------HHHHHHHH------HHH
Confidence 999999887665 89999999999999999999999988764 233332211 11111111 122
Q ss_pred HHHHh-cchhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcc---cchhhHHHHHHHHHHHHHHHHHHH
Q 001116 251 LGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTA---FKGESQQSLHYFWEMVAYIANTLI 326 (1152)
Q Consensus 251 l~~~~-~d~~~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~---~~~~~~~~l~~fw~~i~~l~~~li 326 (1152)
+++.. ++...+ +......++.- ..-|++.-+|-|+.|+++....+.. ..+..++.-|..-..++|+..++|
T Consensus 193 l~r~~v~~~~~Y----~~~G~~lW~~~-l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlF 267 (378)
T PF06965_consen 193 LNRLGVRSLWPY----LLLGILLWYAV-LKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLF 267 (378)
T ss_dssp HHHTT---THHH----HHHHHHHHHHT-TTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHCCCceehHH----HHHHHHHHHHH-HHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhH
Confidence 33321 222222 22233344333 4457777889999999987654432 111222333333334455555444
Q ss_pred -HHHhhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChhHHHHHhh
Q 001116 327 -FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVW 394 (1152)
Q Consensus 327 -Fil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~-----~~~~~~e~~vl~w 394 (1152)
|.-.|+.+....+. ...-+..+.+.+.++++|+++++....+..+++ .+.+|++.+.++.
T Consensus 268 AlaNAGV~l~~~~~~--------~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~ 333 (378)
T PF06965_consen 268 ALANAGVSLSGSSLG--------DLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL 333 (378)
T ss_dssp HHHHS----SSS-----------THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH
T ss_pred hheeCceEEecCchH--------hhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 55577766432211 011122345567788999999976655544433 4567776655554
No 53
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.20 E-value=0.42 Score=56.30 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHH---HHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHH
Q 001116 32 NPTDAVIFVGISLVLGIACRH---LLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPA 108 (1152)
Q Consensus 32 ~~~~~ll~l~~~l~l~~~~~~---l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~ 108 (1152)
|....+.++++++++|.++|. +++|+-+|.++.==++|.++..... ..+.. . ...|.. +...++.+
T Consensus 4 ~~~~tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~----~~~~~--~----~~f~~~-l~~~lm~~ 72 (368)
T PF03616_consen 4 DALQTLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILG----GFGGI--S----ISFDTS-LQDFLMII 72 (368)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHH----hcCce--E----EEechh-HHHHHHHH
Confidence 455667888899999999886 6789999998763333333332211 11111 1 123322 12222222
Q ss_pred HHHHhhhcCCHHHHHHhhhhHHHHHHHH
Q 001116 109 LLFESSFAMEVHQIKRCLVQMILLAGPG 136 (1152)
Q Consensus 109 LLF~~gl~~d~~~lk~~~~~illLav~g 136 (1152)
..=..|+..+++.+||-++.+.......
T Consensus 73 fF~~igL~~~~~~lkkgg~~~~~~~~~~ 100 (368)
T PF03616_consen 73 FFTTIGLGASLKLLKKGGKAVLIFLLIA 100 (368)
T ss_pred HHHHHhhccchhhHHhhHHHHHHHHHHH
Confidence 2123488889999999887776555443
No 54
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.00 E-value=0.018 Score=57.67 Aligned_cols=116 Identities=10% Similarity=0.054 Sum_probs=89.5
Q ss_pred CCCccchhHhhcc-ceEEEEcCCceEEcCCC-CCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhh-----c
Q 001116 746 ELPPSVREPLELS-TKEIMKLSGVTLYREGS-KPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL-----I 818 (1152)
Q Consensus 746 ~Ls~e~l~~L~~~-~~~~~~~~Ge~I~~eGe-~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL-----~ 818 (1152)
+.+..+.++++.+ .+.....+|+.-.-||. +.|.+-++++|.++++..+ ..+..+.|.+++.-.+.. .
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g-----~fLH~I~p~qFlDSPEW~s~~~s~ 88 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDG-----RFLHYIYPYQFLDSPEWESLRPSE 88 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECC-----EeeEeecccccccChhhhccccCC
Confidence 4677888899998 56678889999999997 5599999999999998754 334455666666544322 3
Q ss_pred CCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 819 GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 819 ~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
+.....|++|+++|..+.-+|+.+..++.++|-++.-+-.-+.+-+++
T Consensus 89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~ 136 (153)
T PF04831_consen 89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAE 136 (153)
T ss_pred CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999998876555555555554
No 55
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.89 E-value=0.0085 Score=63.83 Aligned_cols=94 Identities=10% Similarity=0.193 Sum_probs=74.7
Q ss_pred hHhhccceEEEEcCCceE-EcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcce
Q 001116 753 EPLELSTKEIMKLSGVTL-YREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSV 831 (1152)
Q Consensus 753 ~~L~~~~~~~~~~~Ge~I-~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~ 831 (1152)
+.|....+...+.+|..+ +.+....+.+|+|.+|.|.+. .. ++ .++.+...-.+||-...+.+....+..+|+++
T Consensus 16 ~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~-d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~ 91 (207)
T PRK11832 16 KCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-RE-EN--VLIGITQAPYIMGLADGLMKNDIPYKLISEGN 91 (207)
T ss_pred HHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ec-CC--eEEEeccCCeEeecccccCCCCceEEEEEcCc
Confidence 345566678888899996 655555578999999999994 33 33 45567777789999887777777789999999
Q ss_pred EEEEEEeHHHHHHHHhhCH
Q 001116 832 VLCFFIESDKILSILRSDP 850 (1152)
Q Consensus 832 ~~l~~I~~~~f~~ll~~~p 850 (1152)
|+++.+|.+++.++++++.
T Consensus 92 c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 92 CTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred cEEEEeeHHHHHHHHHHhc
Confidence 9999999999999997653
No 56
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.81 E-value=0.4 Score=54.85 Aligned_cols=148 Identities=15% Similarity=0.161 Sum_probs=95.0
Q ss_pred cCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHH
Q 001116 55 RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAG 134 (1152)
Q Consensus 55 ~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav 134 (1152)
....+++.+.-+++|++++....+.++ ...++++ ...+.++.+. +-.-|+++++.++.+...+.++..+
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~---~~~~Gi~----~~~k~~Lr~g----IVLlG~~l~~~~i~~~G~~~~~~~~ 90 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPA---RFKPGIK----FSSKKLLRLG----IVLLGFRLSFSDILALGWKGLLIII 90 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcH---HHHhHHH----HHHHHHHHHH----HHHHCccccHHHHHHhCccHHHHHH
Confidence 357899999999999999962222221 1112221 1223444444 4456889999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 135 PGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQM 214 (1152)
Q Consensus 135 ~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND~~aivlf~~~~~~ 214 (1152)
..++++..+.-++..-.+ +++...+.++|+=.|.=...|+.++-.-++.+++-.....+--.+=...++++|=++..+
T Consensus 91 ~~v~~~~~~~~~lg~r~~--~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~ 168 (305)
T PF03601_consen 91 IVVILTFLLTYWLGRRLF--GLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHA 168 (305)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHH
Confidence 777776666555551333 788889999987777766667666665566555554444444444555677777666555
Q ss_pred H
Q 001116 215 V 215 (1152)
Q Consensus 215 ~ 215 (1152)
.
T Consensus 169 l 169 (305)
T PF03601_consen 169 L 169 (305)
T ss_pred h
Confidence 4
No 57
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.38 E-value=0.088 Score=66.38 Aligned_cols=73 Identities=11% Similarity=0.101 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHH
Q 001116 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVA 175 (1152)
Q Consensus 100 l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpva 175 (1152)
-|-.+++|+.....|+.+|+..+..+++.++.+.+..++.-.+.+.....+ + +++|..++.+|.++++-...+
T Consensus 268 pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~-~--g~~~~~a~~~gl~L~~~Gef~ 340 (621)
T PRK03562 268 PFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP-L--GVPRKQRRWFAVLLGQGGEFA 340 (621)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--CCCHhHHHHHHHHHhccccHH
Confidence 366788888888889999999998877776655554444444443333333 3 899999999999888765443
No 58
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.20 E-value=0.13 Score=64.59 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHH
Q 001116 99 DLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAV 176 (1152)
Q Consensus 99 ~l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV 176 (1152)
+-|..+|+|+.....|+.+|+..+..+++.++.+.+..+++-.+.+..... .+ +++|..++.+|..+++....+.
T Consensus 264 ~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~-~~--g~~~~~al~~g~~L~~~Gef~~ 338 (601)
T PRK03659 264 EPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLAR-LY--GLRSSERMQFAGVLSQGGEFAF 338 (601)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hh--CCCHHHHHHHHHHHhccccHHH
Confidence 336678888888888999999999888776665544444443333333332 32 8899999999999888765443
No 59
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.44 E-value=0.01 Score=70.43 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=85.4
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEE-cCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMK-LSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~-~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
-++..+.|-|.+++-...++|+..|-.... .+|.++...|+.-|.+++|++|.|++.+++ |+.. .+.-|+-||.
T Consensus 280 LeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~Pd--Gk~e---~l~mGnSFG~ 354 (1283)
T KOG3542|consen 280 LEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPD--GKRE---ELKMGNSFGA 354 (1283)
T ss_pred HHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCC--CceE---EeecccccCC
Confidence 467888999999999999999888765433 599999999999999999999999998876 5443 5667999997
Q ss_pred hhhhcCCCceeEEEE-cceEEEEEEeHHHHHHHHhh
Q 001116 814 YEVLIGKPYMSDMVT-DSVVLCFFIESDKILSILRS 848 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A-~t~~~l~~I~~~~f~~ll~~ 848 (1152)
..-....-..-.+++ ..||+..+|...|+-+++..
T Consensus 355 ~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 355 EPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred CCCcchhhhhhhhheecccceEEEeehhhHHHHHHH
Confidence 654443333333333 56899999999999988854
No 60
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.93 E-value=0.79 Score=57.30 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHH
Q 001116 101 LLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAV 176 (1152)
Q Consensus 101 ~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV 176 (1152)
+..+|+|+.....|+++|+..+.++...++.+.+..++.-.+. ++..... ++++|..++.+|.++++......
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~-~~~~~~~--~g~~~~~a~~~gl~l~~~Gef~l 349 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLA-AFFLVRL--FGHSRRTALTIAASLAQIGEFAF 349 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--hCCChhhHHHHHHHHhcccchHH
Confidence 4567888888889999999998876544443322222222222 2222222 27899999999999887655443
No 61
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.85 E-value=0.38 Score=62.66 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHH
Q 001116 101 LLAVFLPALLFESSFAMEVHQIKRCL--VQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVA 175 (1152)
Q Consensus 101 ~~~ifLp~LLF~~gl~~d~~~lk~~~--~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpva 175 (1152)
...+|+|+.....|+.+|+..+.... ..++++.+.+++.-.+ .+++...+ ++++|..++.+|.++++-.-+.
T Consensus 323 ~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~-g~~l~a~~--~g~~~~eal~lG~lm~~kG~~~ 396 (832)
T PLN03159 323 VSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIM-GTIIIAFF--YTMPFREGITLGFLMNTKGLVE 396 (832)
T ss_pred HHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHHH--hCCCHHHHHHHHHHHhcccHHH
Confidence 35688899999999999998875321 1111221221111111 22222222 2899999999999998875444
No 62
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=94.31 E-value=15 Score=43.74 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=65.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHH---HHcCCCCcHHHHHHHHH---HHhhccccccccccCccccccccccccChHHHHHHH
Q 001116 32 NPTDAVIFVGISLVLGIACRH---LLRGTRVPYTVALLIIG---IALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVF 105 (1152)
Q Consensus 32 ~~~~~ll~l~~~l~l~~~~~~---l~~r~~lP~~v~lil~G---illG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~if 105 (1152)
|....+.+.++++++|..++. +++|+.+|.+|.==+++ .++++... +. . ..+|.++ ...+
T Consensus 4 ~~~~t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~------~~---~----~~fd~~l-~~~l 69 (398)
T TIGR00210 4 DIYATLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIF------GT---E----VNFDFSL-RDPL 69 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhc------cE---E----EEcChhH-HHHH
Confidence 445667788888999998876 56899999987522222 22333211 10 1 1233332 2222
Q ss_pred HHHHHHH-hhhcCCHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHccCCCcHHHHHHhhh
Q 001116 106 LPALLFE-SSFAMEVHQIKRCLVQMILLAGPGVMISTF--FLGAALKLTFPYDWSWKTSLLLGG 166 (1152)
Q Consensus 106 Lp~LLF~-~gl~~d~~~lk~~~~~illLav~gvlit~~--~~g~~~~~l~~~~~~~~~alllGa 166 (1152)
..+.|. .|+..+++.+||-.++.+.+....+++... ++|..+..++ |.+...+++.|+
T Consensus 70 -m~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~--gl~P~~Gll~gs 130 (398)
T TIGR00210 70 -MLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLL--GQAPLMGLLAGS 130 (398)
T ss_pred -HHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHhhC
Confidence 333343 478889999999888886665553333221 2233332333 566555655543
No 63
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=94.13 E-value=1.1 Score=53.38 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=78.0
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHH-HHHHHHHHHhhhcCCHHHHHHhhhh
Q 001116 50 CRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLA-VFLPALLFESSFAMEVHQIKRCLVQ 128 (1152)
Q Consensus 50 ~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~-ifLp~LLF~~gl~~d~~~lk~~~~~ 128 (1152)
...++...++.+.++-+++|++++-..+..++ ..-+-+.+-+ +|+|+.....|..+|.+.+..+...
T Consensus 234 ~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~------------l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~ 301 (397)
T COG0475 234 AAYLAELLGLSMILGAFLAGLLLSESEYRKHE------------LEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLL 301 (397)
T ss_pred HHHHHHHhChhHHHHHHHHHHHhcccccchHH------------HHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHH
Confidence 33445567888888888999888875332100 1223455777 8999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHH
Q 001116 129 MILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVAL 179 (1152)
Q Consensus 129 illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ai 179 (1152)
++.+....++.-.+...+.. ..+ +++...++..|..+++.-..+.+-.
T Consensus 302 ~l~~~~~~i~~K~~~~~~~~-~~~--g~~~~~~~~~g~~~~~~ge~~~v~~ 349 (397)
T COG0475 302 ILLLVALAILGKILGAYLAA-RLL--GFSKRLALGIGLLLRQGGEFAFVLA 349 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH--cCcHHHHHHHHhhhhhhhHHHHHHH
Confidence 66655554444443333333 333 6888889988888887655555433
No 64
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=93.82 E-value=18 Score=42.83 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHH
Q 001116 58 RVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGV 137 (1152)
Q Consensus 58 ~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gv 137 (1152)
.+|.++...+.|++++.+. .+. . +. ..--.+.+...++|.-++.-=++.|+++++|..++.+.. +..-
T Consensus 24 ~l~~~vl~~~~~~~lsnlg--------li~-~-p~-~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~ 91 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNLG--------LID-S-PA-SSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIG 91 (378)
T ss_pred hcCHHHHHHHHHHHHHHCC--------CcC-C-CC-cchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHH
Confidence 6899999999999998752 110 0 00 001125677778888888888889999999988876643 3333
Q ss_pred HHHHHHHHHHHHHHcc
Q 001116 138 MISTFFLGAALKLTFP 153 (1152)
Q Consensus 138 lit~~~~g~~~~~l~~ 153 (1152)
.+++++.+.+.+++++
T Consensus 92 ~~g~viG~~va~~l~~ 107 (378)
T PF05684_consen 92 AVGTVIGAVVAFLLFG 107 (378)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444444445555543
No 65
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=93.64 E-value=18 Score=42.13 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=86.0
Q ss_pred cCCCCcHHHHHHHHHHHhhcccc-ccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHH
Q 001116 55 RGTRVPYTVALLIIGIALGSLEY-GTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLA 133 (1152)
Q Consensus 55 ~r~~lP~~v~lil~GillG~~~~-~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLa 133 (1152)
+..++++.+.-+++|+++|.... +.+. ...+++ ....+.++.+.+. .-|+++++.++.+.+.+.+.+.
T Consensus 27 ~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~Gi----~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~ 95 (335)
T TIGR00698 27 ADPALSALFLAILLGMVAGNTIYPQRDE---EKKRGV----LFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVAD 95 (335)
T ss_pred ccCCCcHHHHHHHHHHHHhccccccchh---hccchH----HHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHH
Confidence 45789999999999999997421 1111 111111 1122345555543 3588999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 134 GPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQ 213 (1152)
Q Consensus 134 v~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND~~aivlf~~~~~ 213 (1152)
+..+..+.++..++..-.+ +++...++++|+-.|.=...|+.+.-.-++++++-.....+--.+=+..++++|=.+..
T Consensus 96 ~~~v~~~~~~~~~~g~k~l--~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~ 173 (335)
T TIGR00698 96 TLILTSTFFLTVFLGSSRL--KLDKQMSILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYH 173 (335)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCChhHHHHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHH
Confidence 6655555444444442233 77888888888554444444444444444445444444444444444566666666555
Q ss_pred HH
Q 001116 214 MV 215 (1152)
Q Consensus 214 ~~ 215 (1152)
+.
T Consensus 174 ~l 175 (335)
T TIGR00698 174 YA 175 (335)
T ss_pred HH
Confidence 44
No 66
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.87 E-value=1 Score=56.17 Aligned_cols=131 Identities=22% Similarity=0.223 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhh
Q 001116 37 VIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSF 115 (1152)
Q Consensus 37 ll~l~~~l~l~~~~~~l~-~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl 115 (1152)
++.+++++.+|.+++++- +.+++-.+.+-+++|+++|.+.+ .+ |+.+..+++.+.+|..|+
T Consensus 12 ~l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~-----------------~i-~~~v~~~gl~lFvy~vG~ 73 (562)
T TIGR03802 12 EIALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGI-----------------QI-DPGVKAVFFALFIFAIGY 73 (562)
T ss_pred HHHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCC-----------------CC-ChHHHHHHHHHHHHHhhh
Confidence 666677778888877653 45677767788999999997521 12 345778999999999999
Q ss_pred cCCHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCC
Q 001116 116 AMEVHQI---KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGAS 186 (1152)
Q Consensus 116 ~~d~~~l---k~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~~ 186 (1152)
+.-..-| |+...+..++++..+++. +++.+.+.+++.++.+....++-||.-++..-.++...+.+++.+
T Consensus 74 ~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~-~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~~~ 146 (562)
T TIGR03802 74 EVGPQFFASLKKDGLREIILALVFAVSG-LITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLGLS 146 (562)
T ss_pred ccCHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHHHHHHHHhcCCC
Confidence 9886655 555556666666655544 445566666664455667777777776655545545455656644
No 67
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=91.34 E-value=2.2 Score=44.53 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHH--cCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCC
Q 001116 41 GISLVLGIACRHLL--RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME 118 (1152)
Q Consensus 41 ~~~l~l~~~~~~l~--~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d 118 (1152)
++.+.+|.++..+- +.+++-...+-+++|+++|.+....+. . . ..--++.+-.++|.+.++..|++.-
T Consensus 3 fl~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~~~~~~--~-----~---~~~~~~~l~~~GL~lFl~~VGl~aG 72 (169)
T PF06826_consen 3 FLGIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALGRTGPI--F-----L---PISAPSFLRQLGLALFLAAVGLSAG 72 (169)
T ss_pred hHHHHHHHHhcceeeccceeccccHHHHHHHHHHHHhhhccCC--C-----C---CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666655543 456667777889999999986211110 0 0 1223567888889888998888865
Q ss_pred H---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHH
Q 001116 119 V---HQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVAL 179 (1152)
Q Consensus 119 ~---~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ai 179 (1152)
. +.+|+...+.+.+++.-++++.++..+..++++.++.......+-|+. |+|.+..+.
T Consensus 73 ~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~G~~aGa~---T~tp~L~~A 133 (169)
T PF06826_consen 73 PGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNPGIAAGILAGAL---TSTPALAAA 133 (169)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccc---cCcHHHHHH
Confidence 4 445667778888888877777777666666566433333344444443 444444333
No 68
>PRK03818 putative transporter; Validated
Probab=90.95 E-value=3 Score=51.95 Aligned_cols=128 Identities=17% Similarity=0.231 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccCh---HHHHHHHHHH
Q 001116 33 PTDAVIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFLPA 108 (1152)
Q Consensus 33 ~~~~ll~l~~~l~l~~~~~~l~-~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p---~l~~~ifLp~ 108 (1152)
....++.+++.+.+|.+++++- +.+++- ..+-+++|+++|.+... ++ ..+++ +.+-.++|..
T Consensus 4 ~~~~~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~~----~~---------~~~~~~~~~~~~~~gl~l 69 (552)
T PRK03818 4 IALTVSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVSQ----FG---------LTLDSDMLHFIQEFGLIL 69 (552)
T ss_pred hhHHHHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccccc----cC---------cccChHHHHHHHHHHHHH
Confidence 3445777788888888887642 223344 36778888888874210 01 12222 3466788999
Q ss_pred HHHHhhhcCCHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHH
Q 001116 109 LLFESSFAMEVHQ---IKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVA 178 (1152)
Q Consensus 109 LLF~~gl~~d~~~---lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~a 178 (1152)
.+|..|++.-... +|+...+..++++..+++..++ ++++++++.+++......+-||. |++.+..+
T Consensus 70 Fv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~aGa~---T~tp~l~a 138 (552)
T PRK03818 70 FVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLV-TAILHKLFGIPLPVMLGIFSGAV---TNTPALGA 138 (552)
T ss_pred HHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHhhccc---cccHHHHH
Confidence 9999999877654 4566666666766655555444 66666666433333344444443 44444433
No 69
>PRK04972 putative transporter; Provisional
Probab=90.18 E-value=3.3 Score=51.65 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhh
Q 001116 37 VIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSF 115 (1152)
Q Consensus 37 ll~l~~~l~l~~~~~~l~-~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl 115 (1152)
++.+++.+.+|++++++- +.+++-...+-+++|+++|.+.+ .+ |..+..++|.+.+|..|+
T Consensus 14 ~~~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~-----------------~~-~~~~~~~gl~lF~~~vG~ 75 (558)
T PRK04972 14 ILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHF-----------------SI-NTDALNLGFMLFIFCVGV 75 (558)
T ss_pred hHHHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCC-----------------CC-ChHHHHHHHHHHHHHHhh
Confidence 556666777777776643 44667777788999999997521 12 334567888888999999
Q ss_pred cCCHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhcc
Q 001116 116 AMEVHQ---IKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLS 169 (1152)
Q Consensus 116 ~~d~~~---lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails 169 (1152)
+.-..- +|+...+..++++..+++..++ ++++..++.+++.....++-|+.-+
T Consensus 76 ~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~aGa~T~ 131 (558)
T PRK04972 76 EAGPNFFSIFFRDGKNYLMLALVMVGSALVI-ALGLGKLFGWDIGLTAGMLAGSMTS 131 (558)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHhhccccC
Confidence 876544 4666666667776665555444 4444445533333444555554433
No 70
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=89.79 E-value=44 Score=38.60 Aligned_cols=149 Identities=19% Similarity=0.272 Sum_probs=71.1
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHHHHHcc--CCCcHHHHHHhhhhcccc
Q 001116 96 IDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAG--PGVMISTFFLGAALKLTFP--YDWSWKTSLLLGGLLSAT 171 (1152)
Q Consensus 96 ~~p~l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav--~gvlit~~~~g~~~~~l~~--~~~~~~~alllGails~T 171 (1152)
+++|....+.+..+.|..|+.++.+++++..++.-.... ...++-+=++++.+..+.+ .+-.+..++++-+++-+|
T Consensus 27 ~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtT 106 (313)
T PF13593_consen 27 IKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTT 106 (313)
T ss_pred cchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCch
Confidence 455666677788889999999999999987654422221 1111112223333333332 112233444444443333
Q ss_pred CHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 172 DPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVL-GKS--FGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1152)
Q Consensus 172 DpvaV~ailkelg~~~~l~~ll~gESLlND~~aivlf~~~~~~~~-~~~--~s~~~i~~~~~~~~lggi~iG~~~G~~~~ 248 (1152)
-...++.-+.-|-+. ....-.+.+....++++.=+.+.+.. ++. .+...++..+...++ +=+++|.+.+
T Consensus 107 -v~S~v~~T~~AgGN~---a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vl----lP~~~Gq~~r 178 (313)
T PF13593_consen 107 -VSSSVVLTRLAGGNV---ALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVL----LPLVLGQLLR 178 (313)
T ss_pred -hhHHHHHHHHcCCCH---HHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 111222333333332 22333455555667776666666555 322 334444333322323 3344444444
Q ss_pred HHHH
Q 001116 249 LWLG 252 (1152)
Q Consensus 249 ~~l~ 252 (1152)
.|+.
T Consensus 179 ~~~~ 182 (313)
T PF13593_consen 179 RWVP 182 (313)
T ss_pred HHHH
Confidence 4443
No 71
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=89.66 E-value=15 Score=37.90 Aligned_cols=123 Identities=21% Similarity=0.142 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHcCCCCcH--HHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHH
Q 001116 44 LVLGIACRHLLRGTRVPY--TVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQ 121 (1152)
Q Consensus 44 l~l~~~~~~l~~r~~lP~--~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~ 121 (1152)
++++.+...+++++++|. .++=++++.++... +.. . .--|..+..+...++=...|.+++...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~--------~~~--~-----~~~P~~~~~~~qviiG~~iG~~f~~~~ 68 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLA--------GGL--E-----ITLPPWLLALAQVVIGILIGSRFTREV 68 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhc--------CCc--c-----CCCCHHHHHHHHHHHHHHHHccCCHHH
Confidence 344555556667788884 33333333333321 000 0 123667777777778888899988877
Q ss_pred HHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCC
Q 001116 122 IKRCLVQMI--LLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGAS 186 (1152)
Q Consensus 122 lk~~~~~il--lLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~~ 186 (1152)
+++..+... +..+..+++.+++.++.++... ++++.++++ | .+|-....+..+-++.|++
T Consensus 69 l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~--~~~~~ta~L-a--~~PGGl~~m~~~A~~~gad 130 (156)
T TIGR03082 69 LAELKRLWPAALLSTVLLLALSALLAWLLARLT--GVDPLTAFL-A--TSPGGASEMAALAAELGAD 130 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHH-H--hCCchHHHHHHHHHHhCCC
Confidence 766443332 2333334444555666666654 789988864 3 3444444555555666654
No 72
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=89.41 E-value=8.9 Score=40.68 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhcCCHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHH-HHccCCCcHHHHHHhhhhccccCHHHHHHHH
Q 001116 104 VFLPALLFESSFAMEVHQIKRCLVQMILL--AGPGVMISTFFLGAALK-LTFPYDWSWKTSLLLGGLLSATDPVAVVALL 180 (1152)
Q Consensus 104 ifLp~LLF~~gl~~d~~~lk~~~~~illL--av~gvlit~~~~g~~~~-~l~~~~~~~~~alllGails~TDpvaV~ail 180 (1152)
+++..++|..|++++++++++..+..-.+ +...-++-.=++++.+. .+++..-....++++-++....+...+.+-+
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l 81 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYL 81 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 45678899999999999999877654332 22222222222334333 3433222233444444443333333333332
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 001116 181 KELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLG 217 (1152)
Q Consensus 181 kelg~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~ 217 (1152)
- |-+.. +-.+-..+|...++++.=+...+..+
T Consensus 82 ~--~Gd~~---ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 82 A--GGDVA---LSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp T--T--HH---HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred h--CCCcc---cccceeeHHHHHHHHHHHHHHHHHhc
Confidence 2 22323 44444566666666666655555443
No 73
>COG2855 Predicted membrane protein [Function unknown]
Probab=87.91 E-value=58 Score=37.61 Aligned_cols=145 Identities=19% Similarity=0.249 Sum_probs=91.0
Q ss_pred cCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHH
Q 001116 55 RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAG 134 (1152)
Q Consensus 55 ~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav 134 (1152)
...++|.++.-+++||++|.+.. .+ .....++ ......++.+.+. .-|+++++.++.....+.+.+.+
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~-~~---~~~~~GI----~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~ 100 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQ-IP---AQTSAGI----TFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIA 100 (334)
T ss_pred hhcCchHHHHHHHHHHHHhcccc-ch---hhhccch----hhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHH
Confidence 45779999999999999996521 11 1222333 3345556555544 34889999999998888876644
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 135 PGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGA-SKKLNTIIEGESLMNDGTAIVVYQLFFQ 213 (1152)
Q Consensus 135 ~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~-~~~l~~ll~gESLlND~~aivlf~~~~~ 213 (1152)
. ++.+++++++.+.-++ ++|+..+++.|+-.|.=...|+.++---.+. +++...-+-.-.+++- +++++|-.+..
T Consensus 101 ~-~l~~t~~~~~~lg~~l--gld~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgt-ia~llyP~l~~ 176 (334)
T COG2855 101 I-TLSSTFLFAYFLGKLL--GLDKKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGT-LAMLLYPLLYP 176 (334)
T ss_pred H-HHHHHHHHHHHHHHHh--CCCHHHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHH-HHHHHHHHHHH
Confidence 4 5555555565555454 8999999999976666566666555433333 3444444444445543 45556655555
Q ss_pred HH
Q 001116 214 MV 215 (1152)
Q Consensus 214 ~~ 215 (1152)
+.
T Consensus 177 ~l 178 (334)
T COG2855 177 LL 178 (334)
T ss_pred Hh
Confidence 44
No 74
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=87.89 E-value=6.2 Score=44.93 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhh--hhccccCHHHHHHH
Q 001116 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG--GLLSATDPVAVVAL 179 (1152)
Q Consensus 105 fLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllG--ails~TDpvaV~ai 179 (1152)
.+|+..|.-|+++|++++.+.+.+.+++++..++++.++ ++.+.-++ +.+-..+++.| +=-+.--|.||.+.
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~-~~~i~rll--g~~~~~g~li~stAGnAIcgpAAVaAa 270 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF-NIFADRLV--GGTGIAGAAASSTAGNAVATPLAIAAA 270 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHh--CCChhHHHHHHHHhhHHHHHHHHHHHh
Confidence 778889999999999999999999999988766665544 44443333 66766777777 43344445554443
No 75
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=87.86 E-value=2 Score=45.79 Aligned_cols=88 Identities=22% Similarity=0.240 Sum_probs=59.5
Q ss_pred HHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCC-----HHHHHHhhhhHHHHHHHHHH
Q 001116 64 ALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME-----VHQIKRCLVQMILLAGPGVM 138 (1152)
Q Consensus 64 ~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d-----~~~lk~~~~~illLav~gvl 138 (1152)
+.+++|+++|..... . . ..++......|-.|+|..|.++- ++++|+..++++++.+. ++
T Consensus 3 ~~li~Gi~lG~~~~~------~----~-----~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~-tI 66 (191)
T PF03956_consen 3 IALILGILLGYFLRP------P----F-----SLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLA-TI 66 (191)
T ss_pred eeHHHHHHHHHHhcc------c----c-----cccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHH-HH
Confidence 457789999975210 0 0 11255677788899999999873 45566667888877665 45
Q ss_pred HHHHHHHHHHHHHccCCCcHHHHHHhhhhcc
Q 001116 139 ISTFFLGAALKLTFPYDWSWKTSLLLGGLLS 169 (1152)
Q Consensus 139 it~~~~g~~~~~l~~~~~~~~~alllGails 169 (1152)
+.+++.|+++..++ ++++..++..|+=..
T Consensus 67 lGSllgg~l~~~ll--~~~~~~~lav~sG~G 95 (191)
T PF03956_consen 67 LGSLLGGLLASLLL--GLSLKESLAVASGFG 95 (191)
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHccCc
Confidence 55666666666665 789988888876443
No 76
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=86.46 E-value=72 Score=37.14 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhcCCHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHH-HccCCCcHHHHHHhhhhccccCHHHHHHH
Q 001116 104 VFLPALLFESSFAMEVHQIKRCLVQM---ILLAGPGVMISTFFLGAALKL-TFPYDWSWKTSLLLGGLLSATDPVAVVAL 179 (1152)
Q Consensus 104 ifLp~LLF~~gl~~d~~~lk~~~~~i---llLav~gvlit~~~~g~~~~~-l~~~~~~~~~alllGails~TDpvaV~ai 179 (1152)
+++.+++|--|++++++++++..++. ++-.+...++.-+ +++.+.. +++..-.+..++++-+++-+++...+..-
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~ 125 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQ 125 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHH
Confidence 45567899999999999999876553 2222222222222 2333333 23322234455555555555543333333
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 180 LKELGASKKLNTIIEGESLMNDGTAIVVYQLFF 212 (1152)
Q Consensus 180 lkelg~~~~l~~ll~gESLlND~~aivlf~~~~ 212 (1152)
+.+ -+-.+...+. .+|...+++++-...
T Consensus 126 lAk--Gnvalsv~lt---~~stLl~~~~~P~l~ 153 (328)
T TIGR00832 126 LAK--GDPEYTLVLV---AVNSLFQVFLYAPLA 153 (328)
T ss_pred HcC--CCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 322 2333333332 455556665554433
No 77
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=86.00 E-value=7.3 Score=46.12 Aligned_cols=136 Identities=10% Similarity=0.113 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhc
Q 001116 37 VIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFA 116 (1152)
Q Consensus 37 ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~ 116 (1152)
++..+....+|.+++++ +++|..+..+++=+++-.. +.+.+.++.-...-.+++..-+.+++++-.|..
T Consensus 252 llla~~~y~~G~ll~~~---i~ih~~a~mIi~~~i~K~~--------~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~ 320 (414)
T PF03390_consen 252 LLLACSFYILGVLLSKL---IGIHAYAWMIILVAIVKAF--------GLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVA 320 (414)
T ss_pred HHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555566666655 4899998888776666532 122222211111123557778899999999999
Q ss_pred -CCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhcc---ccCHHHHHHHHhhcC
Q 001116 117 -MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLS---ATDPVAVVALLKELG 184 (1152)
Q Consensus 117 -~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails---~TDpvaV~ailkelg 184 (1152)
+||+++.+.+....++-+..+++...+.++++..++. =+|...|+.-|-+.+ -|.-++|.+.-++.+
T Consensus 321 ~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g-~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~ 391 (414)
T PF03390_consen 321 YTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVG-FYPVESAITAGLCMANMGGTGDVAVLSAANRME 391 (414)
T ss_pred hCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhC-CChHHHHHHhhhcccCCCCCCcchheehhhhcc
Confidence 9999999988777666666677777777766665553 246666666663333 367778877777766
No 78
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=85.84 E-value=74 Score=36.69 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHH
Q 001116 101 LLAVFLPALLFESSFAMEVHQIKRCLVQMILL--AGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVA 178 (1152)
Q Consensus 101 ~~~ifLp~LLF~~gl~~d~~~lk~~~~~illL--av~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~a 178 (1152)
....++..++|.-|+.+...++++.++.-... ++...++-+=++|+.+...++ ...-+..|-++..+-|..|.+
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~----l~~~l~~Gl~ll~~~Pggv~S 114 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP----LPPELAVGLLLLGCCPGGVAS 114 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC----CCHHHHHhHHheeeCCCchhH
Confidence 44778889999999999999999876544322 222222222233444444443 334455555555555544444
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 179 LLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSF--GWGAIIKFLAQVSLGAVGMGLAFGIASVLWLG 252 (1152)
Q Consensus 179 ilkelg~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~--s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~ 252 (1152)
..-..-+..++ .+-.+..-++-..+.++.=+.+.+..++.. +.+..+..+.+..+.=+++|.++-.....|.+
T Consensus 115 ~~~t~lAkGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~ 189 (319)
T COG0385 115 NAMTYLAKGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVE 189 (319)
T ss_pred HHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111011111 222233334444555555555555555332 44444333333333334445555444333333
No 79
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=85.45 E-value=24 Score=40.62 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhh---hhccccchHHHHHHHHHHhh
Q 001116 262 IALTLAVSYIAFFTAQ---EGADVSGVLTVMTLGMFYAA 297 (1152)
Q Consensus 262 i~ltl~~~y~~y~iae---e~lg~SGvlavvvaGl~l~~ 297 (1152)
+.++++++.++|+++. ...+.+.++-+.+.|+.+++
T Consensus 3 l~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n 41 (305)
T PF03601_consen 3 LLLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGN 41 (305)
T ss_pred HHHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhh
Confidence 4567788888888884 35789999999999999986
No 80
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=84.94 E-value=0.75 Score=55.38 Aligned_cols=91 Identities=11% Similarity=0.119 Sum_probs=74.5
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
..+.|++...|++|-...++.++...+...+....++|+.|+.+.++|++++|.|-+... .+-|-..||-
T Consensus 35 ~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~gq----------i~mp~~~fgk 104 (1283)
T KOG3542|consen 35 VYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEGQ----------IYMPYGCFGK 104 (1283)
T ss_pred HHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeecc----------eecCcccccc
Confidence 345688889999999999999999999999999999999999999999999999987531 2223345554
Q ss_pred hhhhcCCCceeEEEEcceEEEEEE
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFI 837 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I 837 (1152)
- +|..|.+++-.++.++..++
T Consensus 105 r---~g~~r~~nclllq~semivi 125 (1283)
T KOG3542|consen 105 R---TGQNRTHNCLLLQESEMIVI 125 (1283)
T ss_pred c---cccccccceeeecccceeee
Confidence 3 46678888888999998888
No 81
>COG2985 Predicted permease [General function prediction only]
Probab=84.68 E-value=5.9 Score=47.21 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhhcCCH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHH
Q 001116 101 LLAVFLPALLFESSFAMEV---HQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (1152)
Q Consensus 101 ~~~ifLp~LLF~~gl~~d~---~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ 177 (1152)
-+.+.|.+.+|..|++--. ..+|+..++-..+|++. +++....+++++.++..+.+....++-||+-|...-+++.
T Consensus 60 ~f~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli-vi~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa~ 138 (544)
T COG2985 60 HFELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI-VIAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQ 138 (544)
T ss_pred hhhhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhHHHH
Confidence 3468888888988888654 45688888888888876 5556666777777764444567888889999999999999
Q ss_pred HHHhhcCCChh
Q 001116 178 ALLKELGASKK 188 (1152)
Q Consensus 178 ailkelg~~~~ 188 (1152)
-++++++.+..
T Consensus 139 ~~L~~lg~~~~ 149 (544)
T COG2985 139 DILRELGAPSQ 149 (544)
T ss_pred HHHHhhccchh
Confidence 99999997754
No 82
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=84.52 E-value=6 Score=45.84 Aligned_cols=134 Identities=16% Similarity=0.204 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhc-
Q 001116 38 IFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFA- 116 (1152)
Q Consensus 38 l~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~- 116 (1152)
+..+....+|.++..+ .++|+.+..+++|+++-.+. .+.+.+..-...--+++...+.+++++-.|+.
T Consensus 186 ~~a~~~y~~g~l~~~~---~~Ih~~v~mII~~vi~k~~g--------llp~~i~~~a~~~~~F~~~~lt~~ll~giGla~ 254 (347)
T TIGR00783 186 LFAVALFMAGGLLKSF---PGIPAYAFMILIAAALKAFG--------LVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSY 254 (347)
T ss_pred HHHHHHHHHHHHHHhc---ccCCHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 3344444455454422 26899999999999987541 12222211011112356667788888888987
Q ss_pred CCHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhcc---ccCHHHHHHHHhhcC
Q 001116 117 MEVHQIKRCL-VQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLS---ATDPVAVVALLKELG 184 (1152)
Q Consensus 117 ~d~~~lk~~~-~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails---~TDpvaV~ailkelg 184 (1152)
+||+++-+.+ .+.+++.+.+| +..++.++++..++. -+|...|+.-|-+.+ -|.-++|.+.-++.+
T Consensus 255 t~l~~L~~a~t~~~vviiv~~V-lg~ii~s~lvGKllG-~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~ 324 (347)
T TIGR00783 255 IDLDDLVAALSWQFVVICLSVV-VAMILGGAFLGKLMG-MYPVESAITAGLCNSGMGGTGDVAVLSASNRMN 324 (347)
T ss_pred CCHHHHHHHhchhHhhhHHHHH-HHHHHHHHHHHHHhC-CChHHHHHHHhhhccCCCCCCceeeeehhhhcc
Confidence 8999999988 66655554444 344444444444442 246777777664443 377777777777765
No 83
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=84.34 E-value=21 Score=42.60 Aligned_cols=171 Identities=15% Similarity=0.128 Sum_probs=106.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHH
Q 001116 32 NPTDAVIFVGISLVLGIACRHLLRG--TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPAL 109 (1152)
Q Consensus 32 ~~~~~ll~l~~~l~l~~~~~~l~~r--~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~L 109 (1152)
+..+.+.++.+.+.+|.......+. ..+|.-+.-+++|+++-.+.-... ..++ ..-.-+.+..+.+=++
T Consensus 216 ~~i~~l~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~--~~~~-------~~~~i~~I~~~sLdlf 286 (398)
T TIGR00210 216 SLIETIALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKK--FPWV-------AERAVSVIGNVSLSLF 286 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhC--cccc-------chHHHHHHHHHHHHHH
Confidence 3455566777777888888777764 789999999999999987521100 0000 0012245667778778
Q ss_pred HHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcH--HHHHHhhhhccccCHH--HHHHHHhhcCC
Q 001116 110 LFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSW--KTSLLLGGLLSATDPV--AVVALLKELGA 185 (1152)
Q Consensus 110 LF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~--~~alllGails~TDpv--aV~ailkelg~ 185 (1152)
+-.+=.+++...+...+.|++++.+.+++++.+..-++.+..++-+++- ..|-.+|--+.+|-.. -.-++-++.|.
T Consensus 287 l~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~ 366 (398)
T TIGR00210 287 LAIALMSLQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGP 366 (398)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCC
Confidence 8888889999999999999999999999999877777776665423221 1222344444444322 22356677773
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 186 -SKKLNTIIEGESLMNDGTAIVVYQLF 211 (1152)
Q Consensus 186 -~~~l~~ll~gESLlND~~aivlf~~~ 211 (1152)
|+-.--+=.--+.+-|.+-..+...+
T Consensus 367 s~~af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 367 SHQAFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred CCcceehhhhHHHHHHHHhhHHHHHHH
Confidence 33333333334455555544444333
No 84
>COG0679 Predicted permeases [General function prediction only]
Probab=83.53 E-value=92 Score=35.90 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=72.6
Q ss_pred cchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchHHHHHHHHHHH
Q 001116 283 SGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFV 362 (1152)
Q Consensus 283 SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~ 362 (1152)
+..+-+.++|+.++..+ -.+ ...+.+..++++...-++..+.+|+.+...... ...+..+......-
T Consensus 168 nP~i~a~i~g~~~~~~~-i~l----P~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~--------~~~~~~~~~~~~~k 234 (311)
T COG0679 168 NPLIIALILGLLLNLLG-ISL----PAPLDTAVDLLASAASPLALIALGLSLAFLKLK--------GSKPPIILIALSLK 234 (311)
T ss_pred CcHHHHHHHHHHHHHcC-CCC----cHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhc--------cccchhHHHHHHHH
Confidence 44444455566654311 111 235677888899999999999999999752221 12222121111111
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhhchhhHHHHHHHhhhhcccCCCCcccccccceehhhhhhHHHhhhhhh
Q 001116 363 QVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVN 442 (1152)
Q Consensus 363 ~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~GlRGavslalAl~v~~~~~~~~~~~~~~~~~~vf~~~gvvllTlli~ 442 (1152)
++.=++.++.... .++..-.+....++.-+-+.+..+..+|.....+ + -.+...+++|.++-
T Consensus 235 ll~~Pl~~~~~~~---~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~--------~-------~laa~~i~ist~ls 296 (311)
T COG0679 235 LLLAPLVALLVAK---LLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGD--------P-------RLAASTILLSTLLS 296 (311)
T ss_pred HHHHHHHHHHHHH---HcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCC--------h-------HHHHHHHHHHHHHH
Confidence 2333333332222 2233333444444444556777777776552111 0 13455677777777
Q ss_pred hhcHHHHHhhc
Q 001116 443 GSTTQYILHLL 453 (1152)
Q Consensus 443 g~t~~~ll~~L 453 (1152)
-.|+|.+.-.+
T Consensus 297 ~~t~p~~~~~l 307 (311)
T COG0679 297 LLTLPLLILLL 307 (311)
T ss_pred HHHHHHHHHHH
Confidence 77776665544
No 85
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=83.01 E-value=35 Score=39.69 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhh----hccccchHHHHHHHHHHhh
Q 001116 262 IALTLAVSYIAFFTAQE----GADVSGVLTVMTLGMFYAA 297 (1152)
Q Consensus 262 i~ltl~~~y~~y~iaee----~lg~SGvlavvvaGl~l~~ 297 (1152)
+.+++.+++.++++++. ..+.|.++-+...|+++++
T Consensus 7 ~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n 46 (335)
T TIGR00698 7 LLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGN 46 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhc
Confidence 45556666777777631 2478999999999999987
No 86
>COG2431 Predicted membrane protein [Function unknown]
Probab=82.50 E-value=7.1 Score=43.28 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCC---HHHHHHhh-hhHHHHHHHH
Q 001116 61 YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME---VHQIKRCL-VQMILLAGPG 136 (1152)
Q Consensus 61 ~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d---~~~lk~~~-~~illLav~g 136 (1152)
...+.+++|+++|.+... ...+|+......|-.|+|..|.++. +...+... +..+.+++.
T Consensus 108 k~~~~vl~g~~~G~l~~~---------------~~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i- 171 (297)
T COG2431 108 KLLGVVLLGLALGLLTGS---------------FLNFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFI- 171 (297)
T ss_pred HHHHHHHHHHHHHHHhcc---------------cccCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHH-
Confidence 456778889998876311 1223677778888899999999887 33222221 444445444
Q ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHhhhhc
Q 001116 137 VMISTFFLGAALKLTFPYDWSWKTSLLLGGLL 168 (1152)
Q Consensus 137 vlit~~~~g~~~~~l~~~~~~~~~alllGail 168 (1152)
++++.++.|.+..++. ++|+..++.+++-.
T Consensus 172 ~ilssliGG~iaa~~l--~lpl~~~lAmasG~ 201 (297)
T COG2431 172 TLLSSLIGGLIAAFLL--DLPLTTGLAMASGF 201 (297)
T ss_pred HHHHHHHHHHHHHHHH--hccHHHHHHHHhcc
Confidence 5667777777776665 78888777766543
No 87
>PRK05326 potassium/proton antiporter; Reviewed
Probab=82.00 E-value=13 Score=46.61 Aligned_cols=65 Identities=9% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhh
Q 001116 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGG 166 (1152)
Q Consensus 100 l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGa 166 (1152)
.+..++.|++.+..|+.+|++.+.......+++++..+++.=.+..+.. ..+++++|..++.+|-
T Consensus 274 ~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~--~~~~~~~~~e~~~i~~ 338 (562)
T PRK05326 274 GLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLS--LLPFRFNLREKLFISW 338 (562)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCCCHhhhheeee
Confidence 3556777888888899999998887666655554433322211211222 1234788888877775
No 88
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=81.50 E-value=19 Score=41.80 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhhhc-CCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccc---cCHH
Q 001116 99 DLLLAVFLPALLFESSFA-MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSA---TDPV 174 (1152)
Q Consensus 99 ~l~~~ifLp~LLF~~gl~-~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~---TDpv 174 (1152)
+.|..-+.=+|++-.|+. +|++++-+.+...-++....+++++...+++..++.. -+|...|+.-|++.+. |.-+
T Consensus 322 ~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~-~YPVEaAI~aglC~a~~GGtGDv 400 (438)
T COG3493 322 QFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMG-FYPVEAAITAGLCMANMGGTGDV 400 (438)
T ss_pred HHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHhHHhcCCCCCCch
Confidence 445566678899999998 9999999887766667777788888888888777764 2577888888777765 7788
Q ss_pred HHHHHHhhcC
Q 001116 175 AVVALLKELG 184 (1152)
Q Consensus 175 aV~ailkelg 184 (1152)
+|.+--++.+
T Consensus 401 aVLsAa~RM~ 410 (438)
T COG3493 401 AVLSAADRME 410 (438)
T ss_pred HHhhhcchhc
Confidence 8888777765
No 89
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=78.10 E-value=1.4e+02 Score=34.49 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=79.9
Q ss_pred ccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchHHHHHHHHHH
Q 001116 282 VSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIF 361 (1152)
Q Consensus 282 ~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~ 361 (1152)
.+.++-+.++|+.++..+-. .-..+.+..++++....++.-+.+|+.+..... ..++.....
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~-----lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~---------~~~~~~~~~---- 242 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFK-----MPGLILKSISILSGATTPMALFSLGLALSPRKI---------KLGVRDAIL---- 242 (321)
T ss_pred hCCChHHHHHHHHHHHHhhc-----CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhh---------ccChHHHHH----
Confidence 35556666777777543221 124567788899999999999999988753221 122322222
Q ss_pred HHHHHHHHH-HHHHHHHHhhCCCCChhHHHHHhhhchhhHHHHHHHhhhhcccCCCCcccccccceehhhhhhHHHhhhh
Q 001116 362 VQVSRLFVV-GTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLI 440 (1152)
Q Consensus 362 ~~v~R~l~v-~~~~p~l~~~~~~~~~~e~~vl~w~GlRGavslalAl~v~~~~~~~~~~~~~~~~~~vf~~~gvvllTll 440 (1152)
..+.|.+.. .+.+.....++....++...++..+-+-+..+..+|-....+ . -.+...+++|.+
T Consensus 243 ~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~--------~-------~~aa~~v~~sT~ 307 (321)
T TIGR00946 243 ALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVD--------V-------ELASTAVTLSTV 307 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCC--------H-------HHHHHHHHHHHH
Confidence 233354432 111111223344445666777777777777777776542110 0 134557777888
Q ss_pred hhhhcHHHHHhhcC
Q 001116 441 VNGSTTQYILHLLD 454 (1152)
Q Consensus 441 i~g~t~~~ll~~Lg 454 (1152)
+.-.|+|.++..+|
T Consensus 308 ls~~tlp~~~~l~~ 321 (321)
T TIGR00946 308 LSLISLPLFIILLG 321 (321)
T ss_pred HHHHHHHHHHHHhC
Confidence 87778887766544
No 90
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=77.64 E-value=20 Score=46.08 Aligned_cols=27 Identities=11% Similarity=0.322 Sum_probs=13.1
Q ss_pred HHHHHHhhhhccccchHHHHHHHHHHhh
Q 001116 270 YIAFFTAQEGADVSGVLTVMTLGMFYAA 297 (1152)
Q Consensus 270 y~~y~iaee~lg~SGvlavvvaGl~l~~ 297 (1152)
+++.+++ +.+.+|..+-.+++|++++.
T Consensus 27 l~s~~lk-eRl~Ls~~~v~Ll~GiilGP 53 (810)
T TIGR00844 27 LVSLFVK-EKLYIGESMVASIFGLIVGP 53 (810)
T ss_pred HHHHHHH-hhcCCcHHHHHHHHHHHhhh
Confidence 3333444 44455555555555555543
No 91
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=77.48 E-value=1.5e+02 Score=34.69 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhc
Q 001116 260 IEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVART 301 (1152)
Q Consensus 260 ~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~ 301 (1152)
+-..+++......|+.+ .++|...|=|+.++|+.+++.+.+
T Consensus 357 i~~~vVl~~i~~~~f~g-rl~~~YPVEaAI~aglC~a~~GGt 397 (438)
T COG3493 357 IALSVVLGAILGGAFVG-RLMGFYPVEAAITAGLCMANMGGT 397 (438)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCCchHHHHHHhHHhcCCCCC
Confidence 34456667777888888 899999999999999999887654
No 92
>PRK04972 putative transporter; Provisional
Probab=76.73 E-value=24 Score=44.09 Aligned_cols=132 Identities=13% Similarity=0.111 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHc-----CCCCcHHHHHHHHHHHhhccccccccccCccccccccccccCh---HHHHHHHHHH
Q 001116 37 VIFVGISLVLGIACRHLLR-----GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFLPA 108 (1152)
Q Consensus 37 ll~l~~~l~l~~~~~~l~~-----r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p---~l~~~ifLp~ 108 (1152)
++.+++.+++|.++..+.= .+++-..-+.+++|+++|.+.. .++.+ ..+++ ..+-.++|.+
T Consensus 383 ~~~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~--------~~~~~---~~~p~~a~~~l~~~GL~l 451 (558)
T PRK04972 383 LLAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRA--------NHPTF---GYIPQGALNMVKEFGLMV 451 (558)
T ss_pred HHHHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccc--------cCCCc---eeeCHHHHHHHHHHhHHH
Confidence 3444455556666554321 1223334668889999987521 11111 11222 2466677887
Q ss_pred HHHHhhhcCCH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhc-cccCHHHHHHHHhhc
Q 001116 109 LLFESSFAMEV---HQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLKEL 183 (1152)
Q Consensus 109 LLF~~gl~~d~---~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGail-s~TDpvaV~ailkel 183 (1152)
.+...|++--. ..+++.+++.+++++..++++.++..++.++++ ++++. .++|++. +-|+|.+..+..+..
T Consensus 452 Fla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~--k~~~~--~~~G~~aG~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 452 FMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVL--RMNRA--LLFGAIMGARTCAPAMEIISDTA 526 (558)
T ss_pred HHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHH--HHHHHHhCCCCCcHHHHHHHhhc
Confidence 77777777543 445667778888877777777777777777776 45554 5666654 448888877766544
No 93
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=76.63 E-value=1.5e+02 Score=34.07 Aligned_cols=133 Identities=14% Similarity=0.188 Sum_probs=85.4
Q ss_pred HHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccC-CC-----cHHHHHHhhhhccccCHHHHH
Q 001116 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPY-DW-----SWKTSLLLGGLLSATDPVAVV 177 (1152)
Q Consensus 104 ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~-~~-----~~~~alllGails~TDpvaV~ 177 (1152)
..+.+++|..|-++|++...+..++-..+-+.=+++.. ++|+.+..+++. |. ==..++.+-+.++.+.+..-.
T Consensus 49 ~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~-~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~ 127 (314)
T PF03812_consen 49 PIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGA-LLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYL 127 (314)
T ss_pred HHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHH-HHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHH
Confidence 34567789999999999999998888888777666654 446666555542 21 113677777888999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 178 ALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIA 246 (1152)
Q Consensus 178 ailkelg~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~ 246 (1152)
++..+.|=..+.+.. +-.-+||+=.+.+. ++++.....+.|..++..++- +++|++.|-+
T Consensus 128 aL~~~yGd~~D~gA~--~i~sl~~GPf~tMl--~LG~sG~a~ip~~~lv~~llP-----~iiG~iLGNL 187 (314)
T PF03812_consen 128 ALMGQYGDEEDVGAF--SILSLNDGPFFTML--ALGASGLANIPWMSLVAALLP-----IIIGMILGNL 187 (314)
T ss_pred HHHHHhCCHHHhHHH--HHHHhhhhHHHHHH--HHhhccccCCCHHHHHHHHHH-----HHHHHHHhcC
Confidence 999999866555432 23346666444333 233333345666655443322 3355565543
No 94
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=73.88 E-value=52 Score=38.14 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCC
Q 001116 41 GISLVLGIACRHLLRGTRVPYTVA--LLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME 118 (1152)
Q Consensus 41 ~~~l~l~~~~~~l~~r~~lP~~v~--lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d 118 (1152)
.+.+.++.+...+++++|+|.+-. =++++.++... +.. . .--|..+.......+=...|.+++
T Consensus 158 ~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~--~~~--------~-----~~~P~~l~~~aqv~iG~~iG~~f~ 222 (318)
T PF05145_consen 158 ALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLF--GGP--------S-----FSLPPWLVNAAQVLIGASIGSRFT 222 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--hCC--------C-----CCCCHHHHHHHHHHHHHHHHcccc
Confidence 334445666667778888885422 22222222221 000 0 112667777777777788899988
Q ss_pred HHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHH
Q 001116 119 VHQIKRCLVQMI--LLAGPGVMISTFFLGAALKLTFPYDWSWKTSLL 163 (1152)
Q Consensus 119 ~~~lk~~~~~il--lLav~gvlit~~~~g~~~~~l~~~~~~~~~all 163 (1152)
...+++..+.+. ++.....+..+++.++.++.+. ++++..+++
T Consensus 223 ~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~--~~~~~t~~L 267 (318)
T PF05145_consen 223 RETLRELRRLLPPALLSTLLLLALCALFAWLLSRLT--GIDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHH
Confidence 887776544332 2233334444556666666665 788887776
No 95
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=73.70 E-value=58 Score=38.53 Aligned_cols=109 Identities=18% Similarity=0.299 Sum_probs=75.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHhhccccccccccCccccccccccccCh---HHHHHHHH
Q 001116 32 NPTDAVIFVGISLVLGIACRHLLR--GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFL 106 (1152)
Q Consensus 32 ~~~~~ll~l~~~l~l~~~~~~l~~--r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p---~l~~~ifL 106 (1152)
+..+.+.++.+++.+|.....+.+ .+.+|.-+.-+++|+++-.+.-.. +. ..+|. +.+..+.|
T Consensus 218 ~~i~~l~~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~----~~--------~~id~~~i~~I~~~sL 285 (368)
T PF03616_consen 218 SLIEHLALILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKT----GK--------YKIDRKTIDRISGISL 285 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHh----Cc--------ccCCHHHHHHHHHHHH
Confidence 444455566666777777666665 567898888888888887652111 10 12344 45677778
Q ss_pred HHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Q 001116 107 PALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1152)
Q Consensus 107 p~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~ 152 (1152)
=+++..+=.+++...+.+...|++++-+.+++++.+..-++.+.++
T Consensus 286 ~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~ 331 (368)
T PF03616_consen 286 DLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVM 331 (368)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8888888889999999999999998877787777766555555444
No 96
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=73.67 E-value=1.8e+02 Score=33.69 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHH
Q 001116 136 GVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLN 190 (1152)
Q Consensus 136 gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~ 190 (1152)
.+++..++.+++.+-.. +++..+|++-+ .|-....++.+-+|.|.+.+.-
T Consensus 63 ~~~~~~~~~~~~l~r~~--~~d~~TA~~~~---~PGg~s~m~~la~~~gad~~~V 112 (318)
T PF05145_consen 63 VTLLLSLVGAWLLRRIS--GLDRATAFFAS---MPGGLSEMVALAEEYGADTRRV 112 (318)
T ss_pred HHHHHHHHHHHHHHHHc--CCChhHHHHHc---CCccHHHHHHHHHHcCCChhhh
Confidence 34444555566655553 67877777643 4555566666668888765543
No 97
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=73.04 E-value=40 Score=35.85 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=20.4
Q ss_pred hccccCHHHHHHHHhhcCCChhHHH
Q 001116 167 LLSATDPVAVVALLKELGASKKLNT 191 (1152)
Q Consensus 167 ils~TDpvaV~ailkelg~~~~l~~ 191 (1152)
....|+|......++++|+|.++..
T Consensus 110 ~~~TT~~~~l~~~l~~l~~P~~~~~ 134 (198)
T TIGR02454 110 LALTTPFPELLSALRRLGVPPLLVE 134 (198)
T ss_pred HHHcCCHHHHHHHHHHcCCCHHHHH
Confidence 3457999999999999999987654
No 98
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=72.90 E-value=1.5e+02 Score=32.45 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHhhccc-cccccccCccccccccccccChHHHHHHHHHH-HHHH
Q 001116 36 AVIFVGISLVLGIACRHLLRGTRVPYTVALLI-IGIALGSLE-YGTSHQLGKIGDGIRLWASIDPDLLLAVFLPA-LLFE 112 (1152)
Q Consensus 36 ~ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil-~GillG~~~-~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~-LLF~ 112 (1152)
.++.+.+.++.=.+.+++.+|++-|..--+++ ..+++..+. .+.+. . + ...+.+++.++.=|. .-|.
T Consensus 7 ~~f~l~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y--~----~----Y~~g~~~i~~lLgPAtVAlA 76 (230)
T COG1346 7 PLFGLLLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLLFGISY--E----D----YMKGGQWINFLLGPATVALA 76 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHcCCCH--H----H----HhcccHHHHHHHHHHHHHHh
Confidence 34445555555566778888988654432222 222222221 11110 0 0 112223333322221 1222
Q ss_pred hhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 113 SSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151 (1152)
Q Consensus 113 ~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l 151 (1152)
.-+-=.++.+||+|++++.-.+.|.+++......+++++
T Consensus 77 vPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~ 115 (230)
T COG1346 77 VPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLF 115 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223347889999999999988888888776666666554
No 99
>COG2855 Predicted membrane protein [Function unknown]
Probab=72.49 E-value=70 Score=36.97 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=70.5
Q ss_pred hhccccchHHHHHHHHHHhhhhhcc--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchHHHH
Q 001116 278 EGADVSGVLTVMTLGMFYAAVARTA--FKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYL 355 (1152)
Q Consensus 278 e~lg~SGvlavvvaGl~l~~~~~~~--~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~~~~~~~~~ 355 (1152)
+..|.+..+=+.+.|+.++.+.+.. .++...-.-+. ++. +==++.|+.+....+.+ -... .
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~-------LLr-~gIvLlG~~ltl~~i~~-----~G~~----~ 95 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKK-------LLR-LGIVLLGFRLTLSDIAD-----VGGS----G 95 (334)
T ss_pred hhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHH-------HHH-HHHHHHcceeeHHHHHH-----cCcc----H
Confidence 3456778888889999987543321 11111111111 111 11256788775543311 0111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHhhh-chhhHHHHHHH-hhhhcccCCCCcccccccceehhhhhh
Q 001116 356 ILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLS-LSVKRSSGGSSLITSETGTLFVFFTGG 433 (1152)
Q Consensus 356 l~l~~~~~v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~-GlRGavslalA-l~v~~~~~~~~~~~~~~~~~~vf~~~g 433 (1152)
+.+.+.++..=++.. .++.+ -.+++++.+..++-+ ++=|+-+.+.. ..++ .+.++.-..++..
T Consensus 96 v~~~~~~l~~t~~~~----~~lg~-~lgld~~~a~Lia~GssICGasAiaA~~pvik----------a~~~eva~aIa~V 160 (334)
T COG2855 96 VLIIAITLSSTFLFA----YFLGK-LLGLDKKLALLIAAGSSICGASAIAATAPVIK----------AEEEEVAVAIAVV 160 (334)
T ss_pred HHHHHHHHHHHHHHH----HHHHH-HhCCCHHHHHHHHccchhhHHHHHHHhCCcCC----------CCccccceehhhH
Confidence 222222322223322 23433 348899999999985 67777655432 2222 1122222222222
Q ss_pred HHHhhhhhhhhcHHHHHhhcCCCC
Q 001116 434 IVFLTLIVNGSTTQYILHLLDMDK 457 (1152)
Q Consensus 434 vvllTlli~g~t~~~ll~~Lgl~~ 457 (1152)
+++-|+. -...|++-.+++++.
T Consensus 161 ~lfgtia--~llyP~l~~~l~l~~ 182 (334)
T COG2855 161 VLFGTLA--MLLYPLLYPLLGLSP 182 (334)
T ss_pred HHHHHHH--HHHHHHHHHHhCCCc
Confidence 3333332 356889999999653
No 100
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=72.49 E-value=29 Score=42.27 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=26.9
Q ss_pred CCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHH
Q 001116 56 GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLF 111 (1152)
Q Consensus 56 r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF 111 (1152)
+.|+|..+++.++|++-|.+.-.+. ..+.....+.+|+|+++=
T Consensus 282 ~~R~~wL~v~~~~~~~t~~ii~~f~-------------~~l~~~~~l~~~iP~i~~ 324 (449)
T TIGR00400 282 KNRIIWLLVLLVSSTFTATIISNYE-------------DLLLSLVALANFIPLLMD 324 (449)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhh
Confidence 3578999999999988876522111 123334566677887743
No 101
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=70.90 E-value=38 Score=34.89 Aligned_cols=111 Identities=18% Similarity=0.139 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHH---HHhh-hhHHHHHHHH
Q 001116 61 YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQI---KRCL-VQMILLAGPG 136 (1152)
Q Consensus 61 ~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~l---k~~~-~~illLav~g 136 (1152)
...+.+++|+++|.+.. . +.+.-.+ ..--+..+-.++|.+.++..|++.-..-+ |+.. ...+.++...
T Consensus 23 ~~~G~L~vgL~~G~~~~--~---~p~~~~~---p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGA--T---GPLTWYI---PFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred ccHHHHHHHHHHHhccc--c---CCcceec---ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 36678899999997521 0 0000000 00123557778899999999998766544 4433 2233333444
Q ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHhhhhc-cccCHHHHHHHHhhc
Q 001116 137 VMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLKEL 183 (1152)
Q Consensus 137 vlit~~~~g~~~~~l~~~~~~~~~alllGail-s~TDpvaV~ailkel 183 (1152)
+++..+++.++.++++ ++++ ....|++. +-|+|.+..+..+..
T Consensus 95 ~~~~~~~~~~~~~~~~--~~~~--~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 95 TVVPTLLVAVALIKLL--RINY--ALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHHHh--CCCH--HHHHHHHhccccChHHHHHHHHHh
Confidence 4455555566666665 4554 34455443 346676666655543
No 102
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=70.53 E-value=1.7e+02 Score=32.17 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=25.3
Q ss_pred CCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 117 MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151 (1152)
Q Consensus 117 ~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l 151 (1152)
-.++.+||++++++.--+.|.+++.+....+.+++
T Consensus 84 ~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~l 118 (232)
T PRK04288 84 KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLI 118 (232)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999877777777665544444443
No 103
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=68.32 E-value=25 Score=35.57 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Q 001116 102 LAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1152)
Q Consensus 102 ~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~ 152 (1152)
..+|+|+- .|.=..+..++.+++++++..+++++++.+++|++..++.
T Consensus 70 ~LfFVPag---VGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~ 117 (141)
T PRK04125 70 GFLFVPSG---ISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQFIL 117 (141)
T ss_pred HHHHhhhH---hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455532 4566678899999999999999999998888888776653
No 104
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=67.52 E-value=1.2e+02 Score=32.55 Aligned_cols=107 Identities=16% Similarity=0.241 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHH-------H
Q 001116 36 AVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLP-------A 108 (1152)
Q Consensus 36 ~ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp-------~ 108 (1152)
+..+++++..++.+..+-+.+=|++..-+-+++|++++.+. |...+ +. .++ -|..+|..+.|. +
T Consensus 17 aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg-G~--kGl-----aDi~lfsGiglmGGaMlRDf 87 (254)
T TIGR00808 17 AFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG-GE--KGL-----ADIAIFGGFGLMGGAMLRDL 87 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC-Cc--ccc-----chhhhhcchhhhhhHHHHHH
Confidence 34556666666666666666679999999999999998752 11110 00 011 123333333321 2
Q ss_pred HHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Q 001116 109 LLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1152)
Q Consensus 109 LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~ 152 (1152)
-+-..+++.|..+.||....-.+--+.|+++++++...+. +.|
T Consensus 88 AIvaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA-~af 130 (254)
T TIGR00808 88 AIVATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVA-WAF 130 (254)
T ss_pred HHHHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3566799999999999987776666777777765544443 444
No 105
>PRK11660 putative transporter; Provisional
Probab=65.15 E-value=3.1e+02 Score=34.50 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=45.5
Q ss_pred cCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccC-----------CCcHHHHHHhhhhccccCHHHHHHHHhhcC
Q 001116 116 AMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPY-----------DWSWKTSLLLGGLLSATDPVAVVALLKELG 184 (1152)
Q Consensus 116 ~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~-----------~~~~~~alllGails~TDpvaV~ailkelg 184 (1152)
..||..+...+..++.+++++++-+....-.+.. .... |..-..+-++|+.-+++...- .++-.+.|
T Consensus 272 ~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~-~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~sr-Sa~n~~aG 349 (568)
T PRK11660 272 TLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDG-MTGTKHSANSELVGQGLGNIVAPFFGGITATAAIAR-SAANVRAG 349 (568)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHH-HHHHHhcC
Confidence 4688888888888888888876655432222211 1111 122234445555555443332 25556778
Q ss_pred CChhHHHHHHHH
Q 001116 185 ASKKLNTIIEGE 196 (1152)
Q Consensus 185 ~~~~l~~ll~gE 196 (1152)
..+++..++.|-
T Consensus 350 arT~la~iv~a~ 361 (568)
T PRK11660 350 ATSPISAVIHAL 361 (568)
T ss_pred CCcHHHHHHHHH
Confidence 889988877654
No 106
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=64.46 E-value=2.9e+02 Score=32.49 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001116 283 SGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAE 336 (1152)
Q Consensus 283 SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~ 336 (1152)
+..+-+.++|++++..+... .-.....+.+..+.++...-++..+.+|..+..
T Consensus 244 nP~~~a~~lgli~~~~~~~~-~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~ 296 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLR-PLFFPSFITDSLSYLGAAAVPLALFVLGASLAR 296 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhc-ccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 56666677777776532211 001116788899999999999999999998864
No 107
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=62.64 E-value=2.4e+02 Score=30.96 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=23.2
Q ss_pred CCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001116 117 MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKL 150 (1152)
Q Consensus 117 ~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~ 150 (1152)
-.++.+|+++.+++.-...|.+++.+...+..++
T Consensus 78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~ 111 (226)
T TIGR00659 78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALL 111 (226)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999887666666655544444433
No 108
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=61.56 E-value=3e+02 Score=31.70 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcc-CCCcHHHHHHhhhhccccCHHHHHHHHhhc
Q 001116 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFP-YDWSWKTSLLLGGLLSATDPVAVVALLKEL 183 (1152)
Q Consensus 105 fLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~-~~~~~~~alllGails~TDpvaV~ailkel 183 (1152)
.+.+.+|-.|-++|++...+..++-..+...=+++..+ +|+.+..+++ .|+-=.+.+.+=+.++.+....-.++..+.
T Consensus 50 il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~-~g~~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~y 128 (312)
T PRK12460 50 LLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIV-IGLLVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEF 128 (312)
T ss_pred HHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHH-HHHHHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHHc
Confidence 45667899999999998877777666665555555443 3444443443 222112344444555555555555555555
Q ss_pred C
Q 001116 184 G 184 (1152)
Q Consensus 184 g 184 (1152)
|
T Consensus 129 G 129 (312)
T PRK12460 129 G 129 (312)
T ss_pred C
Confidence 4
No 109
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=59.76 E-value=3.3e+02 Score=31.62 Aligned_cols=180 Identities=22% Similarity=0.228 Sum_probs=89.1
Q ss_pred cHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHHHhh---hhHHHHHHHH
Q 001116 60 PYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCL---VQMILLAGPG 136 (1152)
Q Consensus 60 P~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk~~~---~~illLav~g 136 (1152)
+.....+++|+.+|....+..+.++... .-.-+.-..+.+..++|--=..+|++++++.. ++.++.-+..
T Consensus 18 ~wv~l~i~~Gi~lG~~~p~~~~~l~~~~-------~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~N 90 (342)
T COG0798 18 LWVFLAIAIGILLGVHFPGLAQLLGKLE-------FGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVN 90 (342)
T ss_pred HHHHHHHHHHHHHHhcccchhhhcccce-------eCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHH
Confidence 3455667788888876444222122110 01112223344444555555678888887654 4444444444
Q ss_pred HHHHHHHHHHHHHHHccCCCc-HHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 137 VMISTFFLGAALKLTFPYDWS-WKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMV 215 (1152)
Q Consensus 137 vlit~~~~g~~~~~l~~~~~~-~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND~~aivlf~~~~~~~ 215 (1152)
.++.-+....+++.+.+ +.| ...++.+-.+.-+|+=+.|-+=+ .+.=.....+--.+||...+++|.......
T Consensus 91 wii~P~lm~~la~~fl~-~~pey~~GlILlglApC~aMVivw~~L-----a~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~ 164 (342)
T COG0798 91 WIIGPLLMFALAWFFLP-DEPEYRAGLILLGLAPCIAMVIVWSGL-----AKGDRELTLVLVAFNSLLQIVLYAPLGKFF 164 (342)
T ss_pred HHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHhhhhHHHHHHHHhh-----ccCcHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444444443 344 33333333333344444443322 222233444455689999999987665544
Q ss_pred cc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001116 216 LG---KSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN 256 (1152)
Q Consensus 216 ~~---~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~ 256 (1152)
.+ .+.++..++.-++ +. +++=++.|.+.++++.+...
T Consensus 165 l~v~~~~v~~~~i~~Sv~-ly---l~iPli~G~lTR~i~~k~kg 204 (342)
T COG0798 165 LGVISISVPFWTIAKSVL-LY---LGIPLIAGVLTRYILIKKKG 204 (342)
T ss_pred HhhccccccHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHhcc
Confidence 32 4556665544322 11 22335566666666655433
No 110
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=59.55 E-value=4.1e+02 Score=34.77 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001116 233 SLGAVGMGLAFGIASVLWLG 252 (1152)
Q Consensus 233 ~lggi~iG~~~G~~~~~~l~ 252 (1152)
..||..+|.++|.+...++.
T Consensus 191 ~~gG~~~Gaa~Gv~~Gli~~ 210 (764)
T TIGR02865 191 YIGGSGAGAAGGVVIGVILG 210 (764)
T ss_pred HhcCchHhHHHHHHHHHHHH
Confidence 35666677777766554443
No 111
>PRK01658 holin-like protein; Validated
Probab=58.95 E-value=50 Score=32.65 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Q 001116 102 LAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1152)
Q Consensus 102 ~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~ 152 (1152)
..+|+|+- .|.=..++.+++++.+++...+.+++++.+++|+...++.
T Consensus 67 ~llFVPa~---VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~ 114 (122)
T PRK01658 67 PLFFIPSA---VGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQLLA 114 (122)
T ss_pred HHHHHHhh---hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543 3555667899999999999999999999999888876653
No 112
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=57.98 E-value=1.1e+02 Score=35.24 Aligned_cols=115 Identities=21% Similarity=0.253 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhc--CCHHHHHHhhhhHHHHHHHHH
Q 001116 60 PYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFA--MEVHQIKRCLVQMILLAGPGV 137 (1152)
Q Consensus 60 P~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~--~d~~~lk~~~~~illLav~gv 137 (1152)
-..+.+++.|+++|.+. | +.+...+.+.+ -+ ++.-+|.++|.+-|+. -..+++|+..+..+..++..=
T Consensus 177 ~~sv~LLlGgliIG~~~-g-~~g~~~i~pf~-------~~-lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~P 246 (327)
T PF05982_consen 177 NKSVVLLLGGLIIGFLA-G-PEGVESIKPFF-------VD-LFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMP 246 (327)
T ss_pred CchHHHHHHHHHHhhee-C-ccchhhccchh-------hc-cHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHH
Confidence 35688899999999862 2 11111111110 11 2233344445554443 234567777777777776655
Q ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChh
Q 001116 138 MISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKK 188 (1152)
Q Consensus 138 lit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~ 188 (1152)
++..++ |+.+.++. |++...+++++.+.++-+-.||=+.+| ..+|+-
T Consensus 247 li~a~i-g~~lg~~~--gls~Gg~~llavLaASASYIAvPAAmR-~AiPeA 293 (327)
T PF05982_consen 247 LINALI-GIGLGWLL--GLSPGGAVLLAVLAASASYIAVPAAMR-AAIPEA 293 (327)
T ss_pred HHHHHH-HHHHHHHh--CCCCccHHHHHHHHhhHhhhhhhHHHH-hhCccc
Confidence 555544 33333333 889899999999988888777766665 345543
No 113
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=57.14 E-value=1.7e+02 Score=34.16 Aligned_cols=130 Identities=14% Similarity=0.025 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHH
Q 001116 21 KSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDL 100 (1152)
Q Consensus 21 ~~~~~~~~~~~~~~~~ll~l~~~l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l 100 (1152)
+..+..+.+-..+......+.+.+..+.+...+.++.|+|.+..+.-..+..+.-..+..+ ..-|.+
T Consensus 171 ~a~~~~~~~i~~~~~~~~~~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~-------------~~lP~w 237 (352)
T COG3180 171 GANGSGTPEIWLPPVDWLILLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGIT-------------IQLPAW 237 (352)
T ss_pred CCCCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhccccee-------------eeCCHH
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHH
Q 001116 101 LLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLL 163 (1152)
Q Consensus 101 ~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~all 163 (1152)
+..+.-.++--..|.++|...++...+...-..+.-+....++.+.+..+..-.+.+|.++++
T Consensus 238 l~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L 300 (352)
T COG3180 238 LLAVAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL 300 (352)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
No 114
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=55.38 E-value=60 Score=40.74 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHhhccccccccccCccccccccccccChH---HHHHHHHHHHHHHhhhcCCHH---HHHHhhhhHHHHH
Q 001116 60 PYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPD---LLLAVFLPALLFESSFAMEVH---QIKRCLVQMILLA 133 (1152)
Q Consensus 60 P~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~---l~~~ifLp~LLF~~gl~~d~~---~lk~~~~~illLa 133 (1152)
-...+.+++|+++|.+.. .++.+ ..+++. .+-.++|.+.++..|++--.. .+++.+.+.++++
T Consensus 416 g~~~g~l~~gl~~g~~~~--------~~~~~---~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g 484 (562)
T TIGR03802 416 GTGGGALISGLVFGWLRS--------KHPTF---GNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLG 484 (562)
T ss_pred hhhHHHHHHHHHHHHhcc--------cCCcc---eecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Confidence 345577888888887521 11110 123333 466788888888888886654 4566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhc-cccCHHHHHHHHhhc
Q 001116 134 GPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLKEL 183 (1152)
Q Consensus 134 v~gvlit~~~~g~~~~~l~~~~~~~~~alllGail-s~TDpvaV~ailkel 183 (1152)
+.-++++.++..++.++++ ++++ ..+.|++. +-|+|.+..+..+..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~--~~~~--~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 485 IVVTILPLIITMLIGKYVL--KYDP--ALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCH--HHHHHHhhccCCCcHHHHHHHHhc
Confidence 7766666666666665665 4554 35555554 447777776666544
No 115
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=54.83 E-value=3.7e+02 Score=30.57 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=44.1
Q ss_pred HHHHHHHhhhcCCHHHHHHhhhh--HHHHHHH-HHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHH--H
Q 001116 106 LPALLFESSFAMEVHQIKRCLVQ--MILLAGP-GVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVAL--L 180 (1152)
Q Consensus 106 Lp~LLF~~gl~~d~~~lk~~~~~--illLav~-gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ai--l 180 (1152)
+..++|..|..++++++++..++ ....++. ..++.-++ ++.+..+++ .+ ..+..|.++.+.-|.++.+. -
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~~--l~--~~~~~glvL~~~~P~~~~s~v~t 88 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVFK--LP--PELAVGVLIVGCCPGGTASNVFT 88 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHhC--CC--HHHHHHHHheeeCCCchHHHHHH
Confidence 78889999999999999987762 2222222 22222222 233333332 22 34445555444444444332 2
Q ss_pred hhcCCChhHHHHHHH
Q 001116 181 KELGASKKLNTIIEG 195 (1152)
Q Consensus 181 kelg~~~~l~~ll~g 195 (1152)
+..|-+..+...+..
T Consensus 89 ~~~~gn~~la~~~~~ 103 (286)
T TIGR00841 89 YLLKGDMALSISMTT 103 (286)
T ss_pred HHhCCCHhhhhHHHH
Confidence 334555555544443
No 116
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=49.09 E-value=4.7e+02 Score=31.12 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=52.2
Q ss_pred HHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCc-------HHHHHHhh--hh-ccccCHHH
Q 001116 106 LPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWS-------WKTSLLLG--GL-LSATDPVA 175 (1152)
Q Consensus 106 Lp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~-------~~~alllG--ai-ls~TDpva 175 (1152)
+..++-....+.++..+....+-++...+...+...++.....+... +.+ ...+++++ +- -++|=|+.
T Consensus 188 v~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~--~~np~~~~~~~~~~~l~Af~T~SS~atlP~~ 265 (390)
T PF00375_consen 188 VFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLPLILFVLT--RKNPFKFLKAMLPALLTAFSTSSSAATLPVT 265 (390)
T ss_dssp HHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TT--T--HHHHHHHTHHHHHHHHHHT-TTTSHHHH
T ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc--CCCHHHHHHHHHHHHHHHhhccCCCCCchhH
Confidence 33444455556777777765544443333222222222222222121 211 12222222 21 23355666
Q ss_pred HHHHHhhcCCChhHHHHH--HHHHHHHHHHHHHHHH--HHHHHHccCCCCHHHH
Q 001116 176 VVALLKELGASKKLNTII--EGESLMNDGTAIVVYQ--LFFQMVLGKSFGWGAI 225 (1152)
Q Consensus 176 V~ailkelg~~~~l~~ll--~gESLlND~~aivlf~--~~~~~~~~~~~s~~~i 225 (1152)
.-+.-+++|.++++.+.+ .|-++=-||+++.... ++++-..|...++.+.
T Consensus 266 ~~~~~~~~gv~~~i~~fv~Plg~t~n~~G~a~~~~~~~iFia~~~gi~l~~~~~ 319 (390)
T PF00375_consen 266 IECLEENLGVSRSIASFVLPLGATINMDGTALYIAIAAIFIAQLYGIDLSFGQI 319 (390)
T ss_dssp HHHHHT-TT--HHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHT--TTTTTH
T ss_pred HHHHHHhcCCCcccceeeechhccccCCccchHHHHHHHHhhhccCceechhHH
Confidence 655556689999998877 6777777777553322 2333233444454443
No 117
>PRK03818 putative transporter; Validated
Probab=48.66 E-value=1.2e+02 Score=37.90 Aligned_cols=105 Identities=16% Similarity=0.063 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhccccccccccCccccccccccccC---hHHHHHHHHHHHHHHhhhcCCHHHHHH----hhhhHHHHHH
Q 001116 62 TVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASID---PDLLLAVFLPALLFESSFAMEVHQIKR----CLVQMILLAG 134 (1152)
Q Consensus 62 ~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~---p~l~~~ifLp~LLF~~gl~~d~~~lk~----~~~~illLav 134 (1152)
.-+.+++|+++|.+..- ++.+ ..++ ...+-.++|.+.++..|++--..-+.. .+...+++++
T Consensus 403 ~~G~L~~gl~~g~~~~~--------~~~~---~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~ 471 (552)
T PRK03818 403 AGGPLIVALILGRIGSI--------GKLY---WFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGF 471 (552)
T ss_pred chHHHHHHHHHHhccCC--------CCce---eecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHH
Confidence 45688899999975221 1111 1122 234666889888888888876554433 3455556666
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhc-cccCHHHHHHHHh
Q 001116 135 PGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLK 181 (1152)
Q Consensus 135 ~gvlit~~~~g~~~~~l~~~~~~~~~alllGail-s~TDpvaV~ailk 181 (1152)
..++++.++..++.++++ ++++. .+.|++. +-|+|.+..+..+
T Consensus 472 ~v~~~~~~~~~~~~~~~~--~~~~~--~~~G~~aG~~t~tp~l~~a~~ 515 (552)
T PRK03818 472 LITAVPLLIVGILARMLA--KMNYL--TLCGMLAGSMTDPPALAFANN 515 (552)
T ss_pred HHHHHHHHHHHHHHHHHH--cCCHH--HHHHHHhccCCCcHHHHHHhc
Confidence 655555555555556665 45543 5556554 3477777655544
No 118
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=48.05 E-value=6.6e+02 Score=31.54 Aligned_cols=79 Identities=10% Similarity=0.094 Sum_probs=46.0
Q ss_pred cCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCC-----------cHHHHHHhhhhccccCHHHHHHHHhhcC
Q 001116 116 AMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDW-----------SWKTSLLLGGLLSATDPVAVVALLKELG 184 (1152)
Q Consensus 116 ~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~-----------~~~~alllGails~TDpvaV~ailkelg 184 (1152)
..|+..++..+..++.+++++.+-+....-.+... ..+.. .=..+-++|+.-++....- .++-.+.|
T Consensus 252 ~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~-~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s~sr-s~~~~~~G 329 (563)
T TIGR00815 252 TLDWELLPTLAPDAIAIAIVGLIESIAIARSFARM-TGYKIDANQELVAQGIANIVGSFFSCYPATGSLSR-TAVNAKAG 329 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCcHHHHHhhHHHHHHHHhCccCCCCcchH-HHHHHhcC
Confidence 45777888888888888888866654443222221 11111 1234555565544444433 34555678
Q ss_pred CChhHHHHHHHH
Q 001116 185 ASKKLNTIIEGE 196 (1152)
Q Consensus 185 ~~~~l~~ll~gE 196 (1152)
..+++..++.|-
T Consensus 330 ~~t~~a~i~~~~ 341 (563)
T TIGR00815 330 CRTQLSGVVTAI 341 (563)
T ss_pred CcchHHHHHHHH
Confidence 899998877654
No 119
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=47.28 E-value=46 Score=35.46 Aligned_cols=44 Identities=5% Similarity=0.078 Sum_probs=36.1
Q ss_pred HhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 874 EKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 874 e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
+.++.++++.+. +......|.+|+.+..+++ .++++++|.++-.
T Consensus 6 ~~~~~~~~~~l~-~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~ 52 (211)
T PRK11753 6 KPQTDPTLEWFL-SHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVL 52 (211)
T ss_pred CCCCHHHHHHHH-hhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEE
Confidence 467778888877 4778889999999887776 8999999999854
No 120
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=47.00 E-value=4.2e+02 Score=28.94 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=25.0
Q ss_pred CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 118 EVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151 (1152)
Q Consensus 118 d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l 151 (1152)
.++.+|+++++++.--+.|.+++.+...++.+++
T Consensus 69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~l 102 (215)
T PF04172_consen 69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLL 102 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999998887777777666655555444
No 121
>PRK01821 hypothetical protein; Provisional
Probab=46.81 E-value=1.2e+02 Score=30.58 Aligned_cols=48 Identities=6% Similarity=0.101 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Q 001116 102 LAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1152)
Q Consensus 102 ~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~ 152 (1152)
..+|+|+- .|.=..+..++.++.+++..-+++++++.+++|+...++.
T Consensus 72 ~LfFVPa~---VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~ 119 (133)
T PRK01821 72 ALLFVPIG---VGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVH 119 (133)
T ss_pred HHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543 3555567899999999999988999998888888776653
No 122
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=46.81 E-value=9.5 Score=45.02 Aligned_cols=108 Identities=13% Similarity=0.241 Sum_probs=11.1
Q ss_pred HHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHH-HHHHHHHHHHhhhcCCHHHH---HHhhhh
Q 001116 53 LLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLL-AVFLPALLFESSFAMEVHQI---KRCLVQ 128 (1152)
Q Consensus 53 l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~-~ifLp~LLF~~gl~~d~~~l---k~~~~~ 128 (1152)
+++.++.++.++-+++|++++..... + .+.+ .-+-+. .++.|......|.++|++.+ ...+..
T Consensus 228 ~a~~~g~s~~l~af~~Gl~~~~~~~~--~---~~~~--------~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~ 294 (380)
T PF00999_consen 228 LAEILGLSGILGAFIAGLILSNSPFA--E---RLEE--------KLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIIL 294 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccceeeeeehcccccccc--c---hhhh--------cccchhhHHHhhHHhhhhcccccccccccchhhhhh
Confidence 34556788888888888888732110 0 0111 112233 78888888899999999888 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHH
Q 001116 129 MILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAV 176 (1152)
Q Consensus 129 illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV 176 (1152)
++.+.+..++.-.+. ++...... +++|..++.+|....+-..+..
T Consensus 295 ~~~~~~~~~~~k~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~l 339 (380)
T PF00999_consen 295 VLLLLIAILLGKFIG-VYLASRLF--GIPWKEALFIGLGMLPRGEVSL 339 (380)
T ss_dssp -------------------------------HHHHTTTTSS--HHHHH
T ss_pred HHHHHHHHHHhhhce-eehhhhhc--ccccchhHHHHHhhcCccHHHH
Confidence 444433332222222 22222222 7889999999988876554443
No 123
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=45.45 E-value=1.1e+02 Score=37.93 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=47.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHH
Q 001116 641 DSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDL 719 (1152)
Q Consensus 641 ~~~v~~~ii~e~~~~~~~A~k~L~~l~~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~~G~lde~E~~~L~~~i~~~l 719 (1152)
++++.+.+.++.+.+.++.+...++-+.+. ..+.-..+.+.+.+++.+|+.+.++.++|.+|++-+.++.+.++.+.
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~~e 520 (525)
T TIGR00831 444 VEPVARELLPELDARIEELRADGEEKIRSG--MGEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDLKE 520 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcccchhhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHH
Confidence 344556666666655555443322211111 01101134677889999999999999999999997777777765543
No 124
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=45.27 E-value=1.1e+02 Score=36.51 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001116 308 QQSLHYFWEMVAYIANTLIFILSGVV 333 (1152)
Q Consensus 308 ~~~l~~fw~~i~~l~~~liFil~Gl~ 333 (1152)
++.+.+=|..+..+..+++|+++|+.
T Consensus 536 ~~il~~~w~a~~~Lia~~L~L~iGli 561 (652)
T KOG2290|consen 536 WQILERPWRAFFHLIATLLVLCIGLI 561 (652)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHhccc
Confidence 56677789999999999999999983
No 125
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=44.00 E-value=34 Score=37.28 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=73.2
Q ss_pred CCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHH
Q 001116 58 RVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGV 137 (1152)
Q Consensus 58 ~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gv 137 (1152)
.+|+..+.+++|.++=...+- . + .+. ..+-......+.+-++.-..|++++.+.+++.......+++..-
T Consensus 126 ~l~~aigel~a~fLiiNI~~~--~--~----~~~--~~iv~s~l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~~ 195 (252)
T KOG3826|consen 126 GLPTAIGELLAGFLIINISFV--N--G----AVC--APIVVSPLRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLPS 195 (252)
T ss_pred cccchHHHHHHHHHheecchh--h--h----cee--eeeeehhhhhccchHHHHHhhhcccccchhhhhHHHhhhhhhhh
Confidence 456688888888655433210 0 0 000 01111223445566788899999999999999888888777766
Q ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHH
Q 001116 138 MISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALL 180 (1152)
Q Consensus 138 lit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ail 180 (1152)
.+.+..-+...+++. +.+|..++++|.++.+-.+..+.+-.
T Consensus 196 ~~~a~a~~~~S~~~l--~~~ii~~~l~g~v~~~i~~~~~r~~~ 236 (252)
T KOG3826|consen 196 IIEASAPAVTSHFLL--AGPIIWAFLLGIVIGSILWRFPRPDY 236 (252)
T ss_pred hhccccHHHHHHHHh--ccchHHHhccccceeeeecCCccccc
Confidence 666666566666654 68999999999998887766555443
No 126
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=43.43 E-value=5.6e+02 Score=29.77 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 174 VAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGA-IIKFLAQVSLGAVGMGLAFGIASVLWLG 252 (1152)
Q Consensus 174 vaV~ailkelg~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~-i~~~~~~~~lggi~iG~~~G~~~~~~l~ 252 (1152)
.....+..-+|+|--.++-+.|.-+ =+.++.. .....+|.. +...+. ..+...++|.+++++..+.++
T Consensus 77 ~iw~~i~t~~glPvStThalvGal~--------G~~l~~~--g~~~v~w~~~~~~I~~-~wv~sPlia~~~a~~l~~~~~ 145 (326)
T PF01384_consen 77 AIWLLIATWLGLPVSTTHALVGALI--------GAGLASG--GFSAVNWSKGLLKIVL-SWVISPLIAFILAYILYRLIR 145 (326)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHH--------HHHHHHh--hhhhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667888877777666421 1111111 113445553 333222 233345566666666555555
Q ss_pred HHh
Q 001116 253 FIF 255 (1152)
Q Consensus 253 ~~~ 255 (1152)
+..
T Consensus 146 ~~~ 148 (326)
T PF01384_consen 146 RIF 148 (326)
T ss_pred HHH
Confidence 443
No 127
>COG3329 Predicted permease [General function prediction only]
Probab=41.87 E-value=5.9e+02 Score=29.20 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Q 001116 193 IEGESLMNDGTAIVVYQLFFQMVLGK 218 (1152)
Q Consensus 193 l~gESLlND~~aivlf~~~~~~~~~~ 218 (1152)
+.-||++|-+..+.+-.+++.+..|+
T Consensus 210 ll~Esflnpal~lllggl~iGlitGe 235 (372)
T COG3329 210 LLQESFLNPALVLLLGGLAIGLITGE 235 (372)
T ss_pred HHHHHHcCchHHHHHHHHHHhheecc
Confidence 33456666665555555555555543
No 128
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=41.27 E-value=2.6e+02 Score=32.36 Aligned_cols=106 Identities=20% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 001116 138 MISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLG 217 (1152)
Q Consensus 138 lit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~ 217 (1152)
++-.+++..++.++.|...|+..+++|| .++||-|+-+|+....+.| ++|-.+-+.=..+-..+...
T Consensus 195 iiFpivv~~~~~ll~P~a~pLig~Lm~G------------nl~rEsgv~~rLs~taqn~-l~nivTi~LGl~vGat~~a~ 261 (360)
T PF03977_consen 195 IIFPIVVTILVGLLLPSAAPLIGMLMFG------------NLLRESGVVERLSKTAQNE-LMNIVTIFLGLTVGATMTAE 261 (360)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHH------------HHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHH
Q ss_pred CCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001116 218 KSFGWG--AIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN 256 (1152)
Q Consensus 218 ~~~s~~--~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~ 256 (1152)
.-.++. .++..-...+..+.+-|+++|++..++.+.-.|
T Consensus 262 ~fL~~~tl~I~~LGl~Af~~~tagGvl~~k~mn~f~k~KiN 302 (360)
T PF03977_consen 262 TFLNPQTLKILVLGLVAFAFSTAGGVLFAKLMNLFSKGKIN 302 (360)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCC
No 129
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=39.90 E-value=2.2e+02 Score=32.78 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001116 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFL 144 (1152)
Q Consensus 104 ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~ 144 (1152)
+.+|++-|.-|-.+|++.+.+...+-++|++..++++....
T Consensus 201 ~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 201 ILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred eeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 45788999999999999999999999999887666654443
No 130
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.76 E-value=1e+03 Score=31.34 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHHHHhhhcCCHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCH
Q 001116 97 DPDLLLAVFLPALLFESSFAMEVHQIK---RCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDP 173 (1152)
Q Consensus 97 ~p~l~~~ifLp~LLF~~gl~~d~~~lk---~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDp 173 (1152)
-.++++.+|....++..++.+--+..+ +..++.+=+++ +.++++.+++..+-. .+....+-+
T Consensus 467 l~~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i--~~ls~~~~~~~~~r~-----~l~~~~l~~-------- 531 (798)
T KOG3599|consen 467 LCEVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAI--VLLSVVLLVLMITRT-----GLADGVLTG-------- 531 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHH-----HHHHHHHHH--------
Confidence 345666677766777778887744442 23444444333 333333333332221 011111100
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001116 174 VAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVL 216 (1152)
Q Consensus 174 vaV~ailkelg~~~~l~~ll~gESLlND~~aivlf~~~~~~~~ 216 (1152)
.....-..-..+......+...++..|+.+|.+.+.+..
T Consensus 532 ----~~~~~~~~f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k 570 (798)
T KOG3599|consen 532 ----FERASPRTFIDFTEVAQWNIAARNLLAFLVFLTTIKLWK 570 (798)
T ss_pred ----HHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111133466788888999999999988888776654
No 131
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=39.61 E-value=2.3e+02 Score=33.21 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=25.1
Q ss_pred ccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 001116 152 FPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDG 202 (1152)
Q Consensus 152 ~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND~ 202 (1152)
.|...|+..+++|| .++||-|+ +|+....+.| ++|-.
T Consensus 247 ~P~a~pLig~Lm~G------------NllrEsGv-~rLs~taqn~-l~niv 283 (399)
T TIGR03136 247 LPVASPLILSFFLG------------VAIKEAQI-EPYQNLLEKT-LTYGS 283 (399)
T ss_pred cccHHHHHHHHHHH------------HHHHHhCc-HHHHHHHHHH-HHHHH
Confidence 34344555666665 46799999 9999988876 44443
No 132
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=39.06 E-value=1.2e+02 Score=30.55 Aligned_cols=80 Identities=9% Similarity=0.061 Sum_probs=48.5
Q ss_pred ceEEEEcCCceEEcCCC-CCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEEE
Q 001116 759 TKEIMKLSGVTLYREGS-KPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (1152)
Q Consensus 759 ~~~~~~~~Ge~I~~eGe-~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~l~~I 837 (1152)
+....+.+|...-..-- ..+.+++|++|...+...+.++++.....+.+||++=.- .+.++.......+++.++.+
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip---~g~~H~~~n~~~~~~~~l~~ 108 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVP---QGHPHFQVNSGDENLEFVAF 108 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEEC---CCCEEEEEcCCCCCEEEEEE
Confidence 33455667777654433 256899999999999877655545555688999976221 22332222233456666666
Q ss_pred eHHH
Q 001116 838 ESDK 841 (1152)
Q Consensus 838 ~~~~ 841 (1152)
+..+
T Consensus 109 ~~~~ 112 (146)
T smart00835 109 NTND 112 (146)
T ss_pred ecCC
Confidence 4443
No 133
>PLN02868 acyl-CoA thioesterase family protein
Probab=38.18 E-value=47 Score=39.94 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=40.9
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
.+|+.++.+++.++. ......+|.+|+.|..+++ .++||++|.|+-..
T Consensus 14 ~~F~~L~~~~l~~l~-~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~ 64 (413)
T PLN02868 14 PLLQRLPSSSLKKIA-EVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSG 64 (413)
T ss_pred cccccCCHHHHHHHH-HhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEE
Confidence 577889989888877 4788889999999988887 89999999998654
No 134
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=36.60 E-value=2.6e+02 Score=31.31 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=40.0
Q ss_pred HHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 001116 274 FTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGIL 339 (1152)
Q Consensus 274 ~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l 339 (1152)
.++ ..++.+.+++-+++|+.++...-...++. +..+.++.+.-.++....|+.++.+.+
T Consensus 9 ~l~-~~l~lP~~v~~il~GillGp~~lg~i~~~------~~~~~l~~igl~~llF~~Gl~~d~~~l 67 (273)
T TIGR00932 9 PLS-RRLGIPSVLGYLLAGVLIGPSGLGLISNV------EGVNHLAEFGVILLMFLIGLELDLERL 67 (273)
T ss_pred HHH-HHhCCCHHHHHHHHHHHhCcccccCCCCh------HHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 355 67899999999999999874321111111 235556777777888889999876554
No 135
>COG2985 Predicted permease [General function prediction only]
Probab=36.44 E-value=1.3e+02 Score=36.49 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCc--------HHHHHHHHHHHhhccccccccccCccccccccccccChHH---HHHHHH
Q 001116 38 IFVGISLVLGIACRHLLRGTRVP--------YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDL---LLAVFL 106 (1152)
Q Consensus 38 l~l~~~l~l~~~~~~l~~r~~lP--------~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l---~~~ifL 106 (1152)
+-+++.+.+|.+++.+ .+.+| ...+.+++|+++|.+. .+++.. ..++|.. +-.+++
T Consensus 368 Lp~~ig~~LGvllGsI--p~~~pg~~s~~LG~aGGpLivaLiLG~ig--------~iGpl~---w~mP~~An~~lrelGl 434 (544)
T COG2985 368 LPFAIGLGLGVLLGSI--PFPLPGPGSFKLGNAGGPLIVALILGFIG--------AIGPLT---WFMPPGALLALRELGL 434 (544)
T ss_pred HHHHHHHHHHHhheee--EeccCCCceEeecccccHHHHHHHHHHhc--------ccCceE---EEcChhHHHHHHHHHH
Confidence 3344445556555443 12233 3356778888888752 222221 1244432 334444
Q ss_pred HHHHHHhhhcCCH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhc-cccCHHHHHHH
Q 001116 107 PALLFESSFAMEV---HQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVAL 179 (1152)
Q Consensus 107 p~LLF~~gl~~d~---~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGail-s~TDpvaV~ai 179 (1152)
.+.|--.|++--- ..+-....+++..+.+-.+++.+.++.+.+++.. ++| ..+.|++. +-|||.+....
T Consensus 435 ~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~k--mn~--~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 435 ALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVLK--MNW--LLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHh--ccH--HHHhhHHhcCCCChHHHHHH
Confidence 4333333333221 2223456667777777777777788888888874 555 34555554 45999887544
No 136
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=36.12 E-value=6e+02 Score=27.62 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=35.5
Q ss_pred HHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q 001116 144 LGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAI 205 (1152)
Q Consensus 144 ~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND~~ai 205 (1152)
+|+++.-++.-.......=++|.++|+|-..+..+ ++.+-.+......-+-.++...+.+
T Consensus 9 ~gYia~r~~G~r~Gl~ltg~~GGlvSSTA~t~~la--~~~r~~p~~~~~~~~~i~lA~~~m~ 68 (211)
T PF13194_consen 9 AGYIAVRLLGPRRGLLLTGLLGGLVSSTATTVSLA--RRSRENPELSRLLAAGILLASAVMF 68 (211)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHH--HHHhhCcchhHHHHHHHHHHHHHHH
Confidence 34544434322456777888999999986665544 3333344555666666666655443
No 137
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=35.06 E-value=55 Score=30.07 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=33.9
Q ss_pred HhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 874 EKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 874 e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
..++.++++.+. +......|.+|+.+..+++ .+++|++|.++-.
T Consensus 3 ~~l~~~~~~~l~-~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~ 49 (115)
T cd00038 3 SGLDDEELEELA-DALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVY 49 (115)
T ss_pred ccCCHHHHHHHH-hhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEE
Confidence 456667777766 4567778999999877765 7899999999764
No 138
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=34.51 E-value=7.2e+02 Score=29.62 Aligned_cols=99 Identities=18% Similarity=0.332 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHh
Q 001116 36 AVIFVGISLVLGIACRHLLR--GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (1152)
Q Consensus 36 ~ll~l~~~l~l~~~~~~l~~--r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~ 113 (1152)
.+..+.+.+.+|.....+.+ ...+|.-++.+++|+++-...-- ++.. .+ ..-.-+.+..+.|-..+=.+
T Consensus 223 ~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~----~~~~--~v---~~~~v~~ig~vsL~lflamA 293 (404)
T COG0786 223 TLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDL----LKKY--RV---FRRAVDVIGNVSLSLFLAMA 293 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHH----hccc--cc---cHHHHHHHhhhHHHHHHHHH
Confidence 34455666667777777665 46789999999999999764210 1100 00 01112445555555555555
Q ss_pred hhcCCHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001116 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFF 143 (1152)
Q Consensus 114 gl~~d~~~lk~~~~~illLav~gvlit~~~ 143 (1152)
=.++...++-....+.+++-.+++++..+.
T Consensus 294 LmSlkLweL~~l~lpl~viL~vQ~i~m~lf 323 (404)
T COG0786 294 LMSLKLWELADLALPLLVILAVQTIVMALF 323 (404)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 566666777766667666655555554443
No 139
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=34.00 E-value=1.2e+02 Score=40.07 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=38.3
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
.+|+.++.+.+..+. .......|.+|+.+..+++ .+|||.+|+|+-.
T Consensus 380 ~lF~~~s~~~l~~L~-~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~ 429 (823)
T PLN03192 380 YLFKGVSREILLLLV-TKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEII 429 (823)
T ss_pred cchhcCCHHHHHHHH-HhhheeeeCCCCEEEECCCCCceEEEEEecEEEEE
Confidence 467888888888777 3566678999999888876 7999999999864
No 140
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=33.71 E-value=1.3e+02 Score=34.41 Aligned_cols=155 Identities=13% Similarity=0.161 Sum_probs=84.6
Q ss_pred HHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcc-CC-----CcHHHHHHhhhhccccCHHHHHHH
Q 001116 106 LPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFP-YD-----WSWKTSLLLGGLLSATDPVAVVAL 179 (1152)
Q Consensus 106 Lp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~-~~-----~~~~~alllGails~TDpvaV~ai 179 (1152)
+.+.+|..|-++|++.-.+..++-..+.+.=+++..+ +|+++..+++ .| +-=.+.+.+=+.++.|....-.++
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~-~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL 129 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWV-VAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASI 129 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHH-HHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHH
Confidence 5566899999999998777766665554444445433 3444444443 22 212356666777888889999999
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 001116 180 LKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTV 259 (1152)
Q Consensus 180 lkelg~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~d~~ 259 (1152)
..+.|=+.+.+... -.-+||+=-+.+. ++....-.++.+...+..++ =+++|+++|-+=..| |..+
T Consensus 130 ~~qyGd~~D~gA~~--i~sl~~GPf~TMi--~LG~sGlA~ip~~~lv~~il-----PlliG~ilGNLD~~~-r~fl---- 195 (314)
T TIGR00793 130 MQQYGTKEEAGAFV--LMSLESGPLMTMV--ILGTAGIASFEPHVFVGAVL-----PFLVGFALGNLDPEL-RDFF---- 195 (314)
T ss_pred HHHcCCHhhhhhhh--hhhhccCcHHHHH--HHhhccCCCCCHHHHHHHHH-----HHHHHHHHhcCCHHH-HHHh----
Confidence 99988665554322 2335665432222 22322223455555433222 133555555432111 1111
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001116 260 IEIALTLAVSYIAFFTA 276 (1152)
Q Consensus 260 ~~i~ltl~~~y~~y~ia 276 (1152)
.-...+.+||+.|-++
T Consensus 196 -~~~~~~lIpFf~FaLG 211 (314)
T TIGR00793 196 -SKAVQTLIPFFAFALG 211 (314)
T ss_pred -ccCCCeeeehhhhhhc
Confidence 1233456677777665
No 141
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=33.02 E-value=5.8e+02 Score=29.28 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=46.7
Q ss_pred CCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHH
Q 001116 57 TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPG 136 (1152)
Q Consensus 57 ~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~g 136 (1152)
++-|..+ -.++|+++...... ++.+....-+.+.....|.-+|..|..++.+.+++.++.+....+.=
T Consensus 180 ~~nP~ii-a~i~Gl~~~~~~i~-----------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~k 247 (321)
T TIGR00946 180 IKFPPLW-APLLSVILSLVGFK-----------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVR 247 (321)
T ss_pred HhCCChH-HHHHHHHHHHHhhc-----------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHH
Confidence 3556544 45566777764221 11111222366778889999999999999998887777766555555
Q ss_pred HHHHHHH
Q 001116 137 VMISTFF 143 (1152)
Q Consensus 137 vlit~~~ 143 (1152)
.++.-++
T Consensus 248 lil~P~i 254 (321)
T TIGR00946 248 FLVQPAV 254 (321)
T ss_pred HHHHHHH
Confidence 4444333
No 142
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=32.62 E-value=56 Score=30.12 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=34.3
Q ss_pred HhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 874 EKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 874 e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
..++...++.+. +......|.+|+.+-.+++ .+++|.+|.++-..
T Consensus 3 ~~l~~~~~~~l~-~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~ 50 (120)
T smart00100 3 KNLDAEELRELA-DALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYK 50 (120)
T ss_pred CCCCHHHHHHHH-HhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEE
Confidence 456666777666 4677788999999877765 78999999997753
No 143
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=32.09 E-value=3.6e+02 Score=31.16 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=28.8
Q ss_pred HccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 001116 151 TFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDG 202 (1152)
Q Consensus 151 l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND~ 202 (1152)
+.|...|+..+++|| .++||-|+-+|+....+.| ++|-.
T Consensus 208 l~P~a~pLig~Lm~G------------nllrEsGv~~rl~~taqn~-l~niv 246 (354)
T TIGR01109 208 LIPKALPLVGMLMFG------------NLMRESGVVERLSKTASNE-LLNIV 246 (354)
T ss_pred HccchHHHHHHHHHH------------HHHHHhccHHHHHHHHHHH-HHHHH
Confidence 455456777788887 4679999999999988876 44543
No 144
>PRK10263 DNA translocase FtsK; Provisional
Probab=31.93 E-value=1e+03 Score=33.00 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=9.4
Q ss_pred cccchHHHHHHHHHH
Q 001116 281 DVSGVLTVMTLGMFY 295 (1152)
Q Consensus 281 g~SGvlavvvaGl~l 295 (1152)
+..|++|.++++++.
T Consensus 141 ~gGGIIG~lLs~lL~ 155 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQ 155 (1355)
T ss_pred cccchHHHHHHHHHH
Confidence 456777776666553
No 145
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=31.68 E-value=8.8e+02 Score=28.24 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=47.0
Q ss_pred HHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCC---c---HHHHHHhhhhccccCHHHHHHH
Q 001116 106 LPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDW---S---WKTSLLLGGLLSATDPVAVVAL 179 (1152)
Q Consensus 106 Lp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~---~---~~~alllGails~TDpvaV~ai 179 (1152)
+.+.+|-.|-.+|++.-.+..++...+.+.=+.+.. ++|++...+++.++ . -...+...+.+.-+|+..-.++
T Consensus 53 ~~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~-~~~~~~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~ 131 (326)
T PRK05274 53 LAVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAA-LVGVIAGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAAL 131 (326)
T ss_pred HHHHHHHcCCEEeccccchhhhhchhHHHHHHHHHH-HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 456788999999998877766665555444333332 23333333332100 1 1244455566777777777677
Q ss_pred HhhcCCChhH
Q 001116 180 LKELGASKKL 189 (1152)
Q Consensus 180 lkelg~~~~l 189 (1152)
+.+.|-+.+.
T Consensus 132 ~~~~g~~~d~ 141 (326)
T PRK05274 132 MGQYGTKEDA 141 (326)
T ss_pred HHHhCCCCCc
Confidence 6666644333
No 146
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=31.64 E-value=1.1e+02 Score=26.08 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=40.1
Q ss_pred EEEcCCceEEcCCCCCC-eeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhh-cCCCceeEEEEcceEEEEEE
Q 001116 762 IMKLSGVTLYREGSKPS-GIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL-IGKPYMSDMVTDSVVLCFFI 837 (1152)
Q Consensus 762 ~~~~~Ge~I~~eGe~~~-~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL-~~~~r~atv~A~t~~~l~~I 837 (1152)
..+.||+..-..-.... .+++|++|.+.+... ++ ...+.+|+.+ .+ .+.++.......+++.++.|
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~---~~---~~~l~~Gd~~----~i~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD---GE---RVELKPGDAI----YIPPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEET---TE---EEEEETTEEE----EEETTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEc---cE---EeEccCCEEE----EECCCCeEEEEECCCCCEEEEEE
Confidence 45667776655555555 899999999999832 22 2467788765 22 23444444444455555543
No 147
>PRK09903 putative transporter YfdV; Provisional
Probab=31.62 E-value=8.4e+02 Score=27.95 Aligned_cols=138 Identities=7% Similarity=-0.020 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchHHHHHHHHHHHH
Q 001116 284 GVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQ 363 (1152)
Q Consensus 284 GvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~~ 363 (1152)
.++-+.++|+++.-.+ ..+ -..+.+..+.++..+.++--+.+|+.+....++ .++. .....+.-+
T Consensus 174 P~iia~~~gl~~~l~~-i~l----P~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---------~~~~-~~~~~~~Kl 238 (314)
T PRK09903 174 PVVWAPVLATILVLVG-VKI----PAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---------FSAE-IAYNTFLKL 238 (314)
T ss_pred hHHHHHHHHHHHHHcC-CCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------ccHH-HHHHHHHHH
Confidence 4444445555544321 112 245677778888899999999999988543211 1121 111111122
Q ss_pred HHHHHHHHHHHHHHHhhCCCCChhHHHHHhhhchhhHHHHHHHhhhhcccCCCCcccccccceehhhhhhHHHhhhhhhh
Q 001116 364 VSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNG 443 (1152)
Q Consensus 364 v~R~l~v~~~~p~l~~~~~~~~~~e~~vl~w~GlRGavslalAl~v~~~~~~~~~~~~~~~~~~vf~~~gvvllTlli~g 443 (1152)
+.-++.++.. +...+....++...++..+-+-+..+..+|-....+ + -.++..|++|.++.-
T Consensus 239 i~~P~i~~~~---~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~--------~-------~~aa~~v~~sTlls~ 300 (314)
T PRK09903 239 ILMPLALLLV---GMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVY--------T-------RTGTASLAVSVLGFV 300 (314)
T ss_pred HHHHHHHHHH---HHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHccc--------H-------HHHHHHHHHHHHHHH
Confidence 2223332221 122233445566666666777888777777542211 0 134556778888888
Q ss_pred hcHHHHHhhcC
Q 001116 444 STTQYILHLLD 454 (1152)
Q Consensus 444 ~t~~~ll~~Lg 454 (1152)
.|+|.++..+.
T Consensus 301 iTlpl~~~l~~ 311 (314)
T PRK09903 301 VTAPLWIYVSR 311 (314)
T ss_pred HHHHHHHHHHH
Confidence 88887776544
No 148
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=31.57 E-value=1.1e+03 Score=29.53 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001116 233 SLGAVGMGLAFGIASVLWLGF 253 (1152)
Q Consensus 233 ~lggi~iG~~~G~~~~~~l~~ 253 (1152)
++|+++.|++.|++..++-++
T Consensus 316 FlG~Ilag~lagyv~~~l~K~ 336 (563)
T PRK10712 316 FIGGIIAGFLAGYVAKLISTK 336 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 578888899999886544443
No 149
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=31.44 E-value=3.2e+02 Score=28.83 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 001116 239 MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMF 294 (1152)
Q Consensus 239 iG~~~G~~~~~~l~~~~~d~~~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~ 294 (1152)
+|++.+++..+.-++..+....+.+..++.+++++.+. ........-.+++++++
T Consensus 134 ~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~~~~-~~~~~~~~~~vii~~i~ 188 (193)
T PF06738_consen 134 LGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLAALLA-RLGPPFSPSAVIIGAIM 188 (193)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH-HhCCCcCHHHHHHHHHh
Confidence 34444544333223333334455555555656565555 33333444555555554
No 150
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=31.16 E-value=1.2e+03 Score=29.48 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhcc
Q 001116 61 YTVALLIIGIALGSL 75 (1152)
Q Consensus 61 ~~v~lil~GillG~~ 75 (1152)
-.++=++.|.+.|.+
T Consensus 315 GFlG~Ilag~lagyv 329 (563)
T PRK10712 315 GFIGGIIAGFLAGYV 329 (563)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345556666666654
No 151
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=30.94 E-value=6.1e+02 Score=29.18 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001116 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFF 143 (1152)
Q Consensus 104 ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~ 143 (1152)
+.+|++-|.-|-.+|++.+.+-..+-++|++..++++.+.
T Consensus 201 ~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 201 TLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred eeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 4578889999999999999998888888888766665444
No 152
>PRK10263 DNA translocase FtsK; Provisional
Probab=30.86 E-value=4.4e+02 Score=36.28 Aligned_cols=19 Identities=5% Similarity=0.078 Sum_probs=14.6
Q ss_pred hhccccchHHHHHHHHHHh
Q 001116 278 EGADVSGVLTVMTLGMFYA 296 (1152)
Q Consensus 278 e~lg~SGvlavvvaGl~l~ 296 (1152)
+.-...|.+|+.++++++.
T Consensus 59 ~V~Nl~GiVGA~LAD~L~~ 77 (1355)
T PRK10263 59 PIHNLGGMPGAWLADTLFF 77 (1355)
T ss_pred ccccccchHHHHHHHHHHH
Confidence 4557789999988887764
No 153
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=30.19 E-value=1.7e+02 Score=34.14 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001116 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFF 143 (1152)
Q Consensus 105 fLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~ 143 (1152)
.+|+..|--|..++.+.+-+...+-+++++..++++..+
T Consensus 204 lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~ 242 (326)
T PRK05274 204 LIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIP 242 (326)
T ss_pred EHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchh
Confidence 788888999999999999998888888877666655433
No 154
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=28.84 E-value=1.6e+02 Score=30.61 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=42.3
Q ss_pred eEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEEEeHHH
Q 001116 769 TLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDK 841 (1152)
Q Consensus 769 ~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~l~~I~~~~ 841 (1152)
.-++..+ .+.+|++++|.+.+...+.+ +.. ...+++||+| ++... .+.+-++..++.++.|.+..
T Consensus 41 ~d~H~~~-tdE~FyqleG~~~l~v~d~g-~~~-~v~L~eGd~f----lvP~g-vpHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 41 TDFHDDP-GEEFFYQLKGEMYLKVTEEG-KRE-DVPIREGDIF----LLPPH-VPHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred cccccCC-CceEEEEEcceEEEEEEcCC-cEE-EEEECCCCEE----EeCCC-CCcccccCCCcEEEEEEeCC
Confidence 3366644 79999999999999766543 322 3578999987 33222 12334445777788877653
No 155
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=28.80 E-value=1.9e+02 Score=29.63 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=39.6
Q ss_pred hccHHHHHHHHHHhhhhccccCCcEEEecCc----EEEEEEeeeeeecccc--------ceeecCCcc
Q 001116 875 KLTMQDMRALIAERSKMTTCLRGEIIEIPYH----CIGFLLEGFIKTHGLQ--------EELITPPAA 930 (1152)
Q Consensus 875 ~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~----~~~ILl~G~V~~~~~~--------~e~i~ap~~ 930 (1152)
+++.+..++++..........+|+....++. ...+|++|.+.....+ -+.+++|.+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qFlDSPEW 81 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQFLDSPEW 81 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeecccccccChhh
Confidence 6677777887732366667888998888775 7889999998876432 245556665
No 156
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=28.53 E-value=1.6e+03 Score=30.37 Aligned_cols=10 Identities=10% Similarity=0.521 Sum_probs=6.0
Q ss_pred HHHHHhhcCC
Q 001116 446 TQYILHLLDM 455 (1152)
Q Consensus 446 ~~~ll~~Lgl 455 (1152)
+.++++.+|.
T Consensus 480 ~~~~~~~~~~ 489 (1146)
T PRK08633 480 LKWFFKLFGV 489 (1146)
T ss_pred HHHHHHHCCE
Confidence 4566666664
No 157
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=28.10 E-value=3.3e+02 Score=27.19 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Q 001116 102 LAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1152)
Q Consensus 102 ~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~ 152 (1152)
..+|+|+-+ |.--.++.+..++.+++...+.++++...++|+...++.
T Consensus 68 ~llFVPa~V---gVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~ 115 (128)
T COG1380 68 ALLFVPAGV---GVMNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLLI 115 (128)
T ss_pred HHHHhcchH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555432 333356788999999999999999999999998887664
No 158
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=28.08 E-value=76 Score=34.59 Aligned_cols=47 Identities=11% Similarity=0.251 Sum_probs=40.0
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
..|..++.+++..+. +......|.+|+.+..+++ .+++|++|.|+-.
T Consensus 13 ~~f~~L~~~~~~~l~-~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~ 62 (236)
T PRK09392 13 PLFADMADATFERLM-RGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELS 62 (236)
T ss_pred ccccCCCHHHHHHHH-hhcceeecCCCCEEEeCCCccceEEEEEeCEEEEE
Confidence 567789999998887 4678889999999988886 7999999999764
No 159
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=27.99 E-value=1.7e+02 Score=31.82 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=33.5
Q ss_pred hccHHHHHHHHHHhh-hhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 875 KLTMQDMRALIAERS-KMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 875 ~L~~~dlr~ll~~~~-~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
.++.+++..+.. .. ....|.+|+.+..+++ .+|+|++|.|+-.
T Consensus 23 ~l~~~~l~~L~~-~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~ 69 (235)
T PRK11161 23 TLNEHELDQLDN-IIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSY 69 (235)
T ss_pred CCCHHHHHHHHH-hhhhceeecCCCEeECCCCCcceEEEEeeceEEEE
Confidence 578888887663 44 3457999999888886 8999999999743
No 160
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=27.62 E-value=1.2e+03 Score=28.55 Aligned_cols=48 Identities=15% Similarity=0.085 Sum_probs=29.5
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHH
Q 001116 179 LLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAII 226 (1152)
Q Consensus 179 ilkelg~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~ 226 (1152)
.+|++.-.+.+...+.+=-+.||++.-++-...+-....-.++..+++
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~ 320 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLI 320 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHH
Confidence 446655567888899999999999876655443332222234444443
No 161
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=27.49 E-value=5.5e+02 Score=33.67 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHH
Q 001116 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (1152)
Q Consensus 100 l~~~ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ 177 (1152)
....+++|.-...+|++.|...+.+ +...........+...+.+..... . +.+||..|+.+|.+++.-.-+...
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl-~--~k~p~~~~l~l~~lm~~kgl~el~ 383 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSL-Y--CKLPLRDSLALGLLMSTKGLVELI 383 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-H--hcCchhHHHHHHHHHHhhhHHHHH
Confidence 3557899999999999999999998 222222222222222222222222 2 278999999999988876554443
No 162
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=27.28 E-value=2.9e+02 Score=23.74 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Q 001116 530 LRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLAS 574 (1152)
Q Consensus 530 ~~~~r~r~l~~~~~~~~~~~~~g~is~~~~~~L~~~vd~~ld~~~ 574 (1152)
+.++...++...++.+....+.|.|+++-+......+|...+...
T Consensus 9 l~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~ 53 (59)
T PF10925_consen 9 LKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYMQ 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456667788888899999999999999999999999988876543
No 163
>COG3671 Predicted membrane protein [Function unknown]
Probab=27.22 E-value=4.8e+02 Score=25.64 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 001116 309 QSLHYFWEMVAYIANTLIFILSGV 332 (1152)
Q Consensus 309 ~~l~~fw~~i~~l~~~liFil~Gl 332 (1152)
-.++.||-.+.+..-+++|.++|+
T Consensus 65 f~iRTFw~~vl~~iIg~Llt~lgi 88 (125)
T COG3671 65 FLIRTFWLAVLWWIIGLLLTFLGI 88 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888777776
No 164
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=27.15 E-value=2.2e+02 Score=23.55 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 001116 538 LNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDL 572 (1152)
Q Consensus 538 l~~~~~~~~~~~~~g~is~~~~~~L~~~vd~~ld~ 572 (1152)
-.+..+++.++..+|.|+++.+...+..-|..+..
T Consensus 12 G~aL~dtLDeli~~~~I~p~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 12 GIALTDTLDELIQEGKITPQLAMKVLEQFDKSINE 46 (49)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999888877654
No 165
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.17 E-value=2.1e+02 Score=36.86 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=60.0
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeeccccceeecCCccccCCCCccccccccCCC
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSG 947 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~~~~e~i~ap~~~~p~~~~~~~~~~~~~~ 947 (1152)
.+|+.++.+=++.+. ...+...|.+|+.+..+++ ..+||.+|.++..+....-...-+.+-| -+.+|
T Consensus 425 pLF~~md~~~L~al~-~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~---------Gd~~G 494 (727)
T KOG0498|consen 425 PLFAGMDDGLLDALC-SRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGP---------GDFFG 494 (727)
T ss_pred chhhcCCHHHHHHHH-HHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecC---------CCccc
Confidence 478888887666655 5788889999999999998 9999999999876543111122222122 13455
Q ss_pred cccccccc-ccceeEEeeeeeEEEEecc
Q 001116 948 VEAVSFSH-QGSCYLVETRARVIIFDIA 974 (1152)
Q Consensus 948 ~~~~~~~~-~~~~~~~e~~~~~~~~~~~ 974 (1152)
..--..++ -++++.|.|.+-+=+|-..
T Consensus 495 eEl~~~~~~~p~t~TVralt~~el~~L~ 522 (727)
T KOG0498|consen 495 EELLTWCLDLPQTRTVRALTYCELFRLS 522 (727)
T ss_pred hHHHHHHhcCCCCceeehhhhhhHHhcc
Confidence 22222334 6667888776655554443
No 166
>PRK13666 hypothetical protein; Provisional
Probab=25.99 E-value=3.1e+02 Score=25.50 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=38.9
Q ss_pred HhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhh
Q 001116 668 VNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLL 723 (1152)
Q Consensus 668 ~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~~G~lde~E~~~L~~~i~~~lk~l~ 723 (1152)
.+.|-|.+.+.|.--. ..+.+.+-.+-|++++++...+...+++++..+.
T Consensus 37 ~qCPlyEEVlDTQmfG------lSreVdFAvrlgli~~~~Gk~ll~~LE~~Ls~L~ 86 (92)
T PRK13666 37 PQCPLYEEVLDTQMFG------LSREVDFAVRLGLIDEEEGKQLLSRLERELSALH 86 (92)
T ss_pred ccCchHHHHHHHHHhh------hHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 4678888888886433 2344566678999999999999999999988754
No 167
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=25.40 E-value=2.4e+02 Score=30.87 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=45.0
Q ss_pred ceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh----hhhcCCC---------ceeE
Q 001116 759 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY----EVLIGKP---------YMSD 825 (1152)
Q Consensus 759 ~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~----~lL~~~~---------r~at 825 (1152)
++.....+|+..-.+-..-+.+.+++.|.+++...+ +.||++ +.+.++| +..+
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g--------------~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~ 96 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHG--------------STFGEIGTRMSVFERKPPDSVYVPAGSAFS 96 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeecc--------------chHhhcccccccccCCCCCeEEecCCceEE
Confidence 445556699998877777778888999999987533 333332 3444443 5678
Q ss_pred EEEcceEEEEEEe
Q 001116 826 MVTDSVVLCFFIE 838 (1152)
Q Consensus 826 v~A~t~~~l~~I~ 838 (1152)
+.|.+++++-.-+
T Consensus 97 vtA~t~~~vAvC~ 109 (270)
T COG3718 97 VTATTDLEVAVCS 109 (270)
T ss_pred EEeecceEEEEEe
Confidence 9999998776543
No 168
>PF00950 ABC-3: ABC 3 transport family; InterPro: IPR001626 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 3 of ABC transporters.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane
Probab=24.90 E-value=1e+03 Score=26.66 Aligned_cols=86 Identities=19% Similarity=0.215 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchhHHHHHHHHHHH
Q 001116 194 EGESLMNDGTAIVVYQ-LFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGF--IFNDTVIEIALTLAVSY 270 (1152)
Q Consensus 194 ~gESLlND~~aivlf~-~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~--~~~d~~~~i~ltl~~~y 270 (1152)
.+.+.+-|+.+-..+. +.++...+.. ..+|+++++++.+....+.-++ ..+|...-+.++..++.
T Consensus 29 Rr~~f~~~alsH~al~Gvala~~l~~~------------~~~ga~~~~ll~a~~i~~l~~~~~~~~d~~igiv~~~~~al 96 (257)
T PF00950_consen 29 RRMSFLGDALSHAALAGVALALLLGIS------------PLLGAIIFALLAALLIGFLSRRSKISEDAAIGIVFSFSFAL 96 (257)
T ss_pred hhHHHhhhhHHHHHHHHHHHHHHhCCC------------hHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH
Confidence 4467777777654443 3333333322 1233344444544443332222 23456666677666666
Q ss_pred HHHHHhhhhccccchHHHHHHH
Q 001116 271 IAFFTAQEGADVSGVLTVMTLG 292 (1152)
Q Consensus 271 ~~y~iaee~lg~SGvlavvvaG 292 (1152)
...+++ -.-+.+.=+--+..|
T Consensus 97 gvll~s-~~~~~~~~l~~~LfG 117 (257)
T PF00950_consen 97 GVLLLS-LSPGYSSDLESYLFG 117 (257)
T ss_pred HHHHHh-hCcccchhHHHHHhC
Confidence 666555 333344444444444
No 169
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=24.87 E-value=5.8e+02 Score=28.67 Aligned_cols=19 Identities=5% Similarity=0.356 Sum_probs=16.0
Q ss_pred cHHHHHHhhhhccccCHHH
Q 001116 157 SWKTSLLLGGLLSATDPVA 175 (1152)
Q Consensus 157 ~~~~alllGails~TDpva 175 (1152)
-+..++.+|++++|+|+..
T Consensus 200 ~iv~~fViaaviTPpd~~s 218 (255)
T COG0805 200 AIVAAFVIAAIITPPDVLS 218 (255)
T ss_pred eeehHHHHHHHcCCCchHH
Confidence 3568999999999999854
No 170
>PRK14695 serine/threonine transporter SstT; Provisional
Probab=23.56 E-value=1e+03 Score=27.58 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=29.4
Q ss_pred HhhcCCChhHHHHH--HHHHHHHHHHHHH--HHHHHHHHHccCCCCHHHHHH
Q 001116 180 LKELGASKKLNTII--EGESLMNDGTAIV--VYQLFFQMVLGKSFGWGAIIK 227 (1152)
Q Consensus 180 lkelg~~~~l~~ll--~gESLlND~~aiv--lf~~~~~~~~~~~~s~~~i~~ 227 (1152)
++++|+|++..+++ .|-++=-||+++- +..+++.-..|-..++.+.+.
T Consensus 190 ~e~lGv~~~ia~fvlPLGatinmdG~aiy~~~~~iFiaq~~Gi~ls~~~~~~ 241 (319)
T PRK14695 190 CHDLGLNPDTYSVSIPLGSTINMAGVAITINLLTLVTVNTLGIPVDFATAFV 241 (319)
T ss_pred HHHcCcCcccEeeeeccchhhCCCchHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 37899999997665 5777777877653 222333333455566655433
No 171
>TIGR00359 cello_pts_IIC phosphotransferase system, cellobiose specific, IIC component. The family consists of the cellobiose specific form of the phosphotransferase system (PTS), IIC component.
Probab=23.50 E-value=1.4e+03 Score=27.72 Aligned_cols=57 Identities=9% Similarity=0.187 Sum_probs=32.1
Q ss_pred hhccccchHHHHHHHHHHhhh----hhc----ccchhhHHHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 001116 278 EGADVSGVLTVMTLGMFYAAV----ART----AFKGESQQSL-HYFWEMVAYIANTLIFILSGVVI 334 (1152)
Q Consensus 278 e~lg~SGvlavvvaGl~l~~~----~~~----~~~~~~~~~l-~~fw~~i~~l~~~liFil~Gl~i 334 (1152)
.++|..|+..+++.|++.... .+. +++......+ +.|-..+-.+...++|..++..+
T Consensus 131 ~~lG~~GlF~Aiivg~l~~~i~~~~~~~~~~ikmp~~VP~~v~~sF~~liP~~i~i~~~~~i~~~~ 196 (423)
T TIGR00359 131 NLLGAKGLFVAMIIALVSTEIYRFIVQKNLVIKMPDGVPPAVSKSFVALIPGFIILSVMWLINLAI 196 (423)
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHcCceeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999886542 121 2222222333 34444455555555566655444
No 172
>TIGR00410 lacE PTS system, lactose/cellobiose family IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family of proteins consists of both the cellobiose specific and the lactose specific forms of the phosphotransferase system (PTS) IIC component. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to the substrate. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC.
Probab=23.50 E-value=1.4e+03 Score=27.72 Aligned_cols=57 Identities=9% Similarity=0.187 Sum_probs=32.1
Q ss_pred hhccccchHHHHHHHHHHhhh----hhc----ccchhhHHHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 001116 278 EGADVSGVLTVMTLGMFYAAV----ART----AFKGESQQSL-HYFWEMVAYIANTLIFILSGVVI 334 (1152)
Q Consensus 278 e~lg~SGvlavvvaGl~l~~~----~~~----~~~~~~~~~l-~~fw~~i~~l~~~liFil~Gl~i 334 (1152)
.++|..|+..+++.|++.... .+. +++......+ +.|-..+-.+...++|..++..+
T Consensus 131 ~~lG~~GlF~Aiivg~l~~~i~~~~~~~~~~ikmp~~VP~~v~~sF~~liP~~i~i~~~~~i~~~~ 196 (423)
T TIGR00410 131 NLLGAKGLFVAMIIALVSTEIYRFIVQKNLVIKMPDGVPPAVSKSFVALIPGFIILSVMWLINLAI 196 (423)
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHcCceeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999886542 121 2222222333 34444455555555566655444
No 173
>PRK10537 voltage-gated potassium channel; Provisional
Probab=23.43 E-value=6.9e+02 Score=29.92 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=12.4
Q ss_pred CcHHHHHHhhhhcccc
Q 001116 156 WSWKTSLLLGGLLSAT 171 (1152)
Q Consensus 156 ~~~~~alllGails~T 171 (1152)
++|..|+.++.+...|
T Consensus 167 ~s~~dA~y~svvt~tT 182 (393)
T PRK10537 167 ESLSTAFYFSIVTMST 182 (393)
T ss_pred CCHHHHHHhhheeeec
Confidence 6889999988766555
No 174
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=22.72 E-value=1.1e+03 Score=28.66 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=19.0
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHHH
Q 001116 181 KELGASKKLNTIIEGESLMNDGTAI 205 (1152)
Q Consensus 181 kelg~~~~l~~ll~gESLlND~~ai 205 (1152)
||+.-.+.+...+..--.++|++.-
T Consensus 246 k~i~~~~~i~~FLiA~~~~~DGv~t 270 (438)
T COG2270 246 KEIRGRKNLVLFLIARFFYIDGVNT 270 (438)
T ss_pred HHHhcccchHHHHHHHHHHHhhHHH
Confidence 4555556788888999999999753
No 175
>COG2118 DNA-binding protein [General function prediction only]
Probab=22.47 E-value=2.2e+02 Score=27.71 Aligned_cols=49 Identities=22% Similarity=0.427 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHhcc----chhHHHhhhhHHHHHHH
Q 001116 658 DARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGL----LEEKEMLHLHDAVQSDL 719 (1152)
Q Consensus 658 ~A~k~L~~l~~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~~G~----lde~E~~~L~~~i~~~l 719 (1152)
+|+..|..++..-|+++++++. ++..|.+.|. +++.+...+...+..+-
T Consensus 53 eAreRL~~irLvRPe~AeavE~-------------qLi~LaqtGri~~~I~e~~lk~IL~~i~~~~ 105 (116)
T COG2118 53 EARERLARVRLVRPELAEAVEN-------------QLIQLAQTGRITHKIDEEELKEILERISPQT 105 (116)
T ss_pred HHHHHHHHhhhcCHHHHHHHHH-------------HHHHHHHcCCCCCCCCHHHHHHHHHHHhHHh
Confidence 5889999999999999999885 4445666776 67777777766666554
No 176
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=22.26 E-value=1.2e+03 Score=29.87 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=14.1
Q ss_pred hhccccchHHHHHHHHHH
Q 001116 278 EGADVSGVLTVMTLGMFY 295 (1152)
Q Consensus 278 e~lg~SGvlavvvaGl~l 295 (1152)
+++..+|.+++++-|+.=
T Consensus 164 ~~i~~~g~~G~fiyG~le 181 (648)
T PRK10255 164 EWIVSAGALGSGIFGFIN 181 (648)
T ss_pred HHHHcCCchHHHHHHHHH
Confidence 456668999999999763
No 177
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=21.84 E-value=7e+02 Score=29.93 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=36.7
Q ss_pred hhccccCHHHHHHH----HhhcCCChhHHHHHH--HHHHHHHHHHHH--HHHHHHHHHccCCCCHHHHH
Q 001116 166 GLLSATDPVAVVAL----LKELGASKKLNTIIE--GESLMNDGTAIV--VYQLFFQMVLGKSFGWGAII 226 (1152)
Q Consensus 166 ails~TDpvaV~ai----lkelg~~~~l~~ll~--gESLlND~~aiv--lf~~~~~~~~~~~~s~~~i~ 226 (1152)
..++..+..++.++ .+++|+|++..+++. |-++=.||+++. +..+|.+-..|-..++.+.+
T Consensus 258 ~AfsT~SS~AtLPv~m~~~~~lGv~~~i~~fvlPLGat~nmdG~aly~~i~~iFiaq~~Gi~l~~~~~~ 326 (402)
T PRK13628 258 TAFFTRSSAANIPVNMALCEKLGLDEDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGIPVDLPTAL 326 (402)
T ss_pred HHheehhHHhHHHHHHHHHHHcCcCccceeEEeecccccCCCccHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 33444444454444 367999999987775 777777877653 33444444445555655443
No 178
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=21.83 E-value=3.1e+02 Score=32.40 Aligned_cols=105 Identities=10% Similarity=-0.099 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhhcCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcc-CCCcHHHHHHhhhhccccCHHHHHHHHhh
Q 001116 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFP-YDWSWKTSLLLGGLLSATDPVAVVALLKE 182 (1152)
Q Consensus 104 ifLp~LLF~~gl~~d~~~lk~~~~~illLav~gvlit~~~~g~~~~~l~~-~~~~~~~alllGails~TDpvaV~ailke 182 (1152)
..+-..++.-|...|++.++..+..-..+++.-+. ...+.-+..+.+.. ..+|-..+ ..+.++++..|.-..+.+..
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~-q~~i~pl~~f~~~~~~~lP~~~~-ag~~Lvtc~~p~g~~~~~~~ 194 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVP-QYLIMPLLGFLLSKVLLLPAALA-AGLLLVTCVSPGGGGNYLTS 194 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHH-HHHHHHHHHHhhhhHhhCCcccc-ceeEEEEeccCCcchhhhee
Confidence 34456678889999999999987766554433222 22221111111110 02232222 56677777877777666654
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 183 LGASKKLNTIIEGESLMNDGTAIVVYQLF 211 (1152)
Q Consensus 183 lg~~~~l~~ll~gESLlND~~aivlf~~~ 211 (1152)
+- ++.-.++.....-++-..+++++-+.
T Consensus 195 ~~-~~g~v~lsilmT~~stv~avi~~pl~ 222 (371)
T KOG2718|consen 195 KR-LPGDVTLSILMTTISTVLAVILTPLL 222 (371)
T ss_pred ec-CCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 33 33344555555555555555555443
No 179
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=20.82 E-value=9e+02 Score=28.57 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=27.2
Q ss_pred HccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 001116 151 TFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMND 201 (1152)
Q Consensus 151 l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND 201 (1152)
+.|...|+...++|| .++||-|+-+|+....+.| ++|-
T Consensus 279 l~P~a~PLiGmlmfG------------NllrEsGVv~rLs~taqn~-L~ni 316 (433)
T PRK15475 279 LLPDAAPLLGMFCFG------------NLMRESGVVERLSDTVQNG-LINI 316 (433)
T ss_pred HcccHHHHHHHHHHH------------HHHHHhccHHHHHHHHHHH-HHHH
Confidence 345445666777776 5679999999999988876 4444
No 180
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=20.27 E-value=1.3e+03 Score=26.24 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=57.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccc-cCHH--HHHH---HHhhcCCChhHHHHHH
Q 001116 121 QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSA-TDPV--AVVA---LLKELGASKKLNTIIE 194 (1152)
Q Consensus 121 ~lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~-TDpv--aV~a---ilkelg~~~~l~~ll~ 194 (1152)
.+.+.+++.++.+++.++++.++...++|.+..+.+++.. +++..+++. -=|. .+++ +++++|+-....-++.
T Consensus 70 ~f~~~~~NSliva~~~t~l~i~~~~laaYalar~~f~g~~-~~~~~~l~~lm~P~~v~~iPl~~~~~~lgl~nt~~glil 148 (281)
T COG0395 70 GFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRK-LLFLLLLLTLMLPAQVLLIPLYLLMRKLGLLNTYWGLIL 148 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHcCChhhHHHHHH
Confidence 4777788888999999888888777777766543444443 333333333 2233 2333 4478886555666777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001116 195 GESLMNDGTAIVVYQLFF 212 (1152)
Q Consensus 195 gESLlND~~aivlf~~~~ 212 (1152)
--...|-+.++.++.-+.
T Consensus 149 ~~~~~~~pf~ifl~~~ff 166 (281)
T COG0395 149 PYLAFGLPFAIFLLRQFF 166 (281)
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 777777777777666544
No 181
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=20.11 E-value=9.6e+02 Score=28.38 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=27.1
Q ss_pred HccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 001116 151 TFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMND 201 (1152)
Q Consensus 151 l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND 201 (1152)
+.|...|+...++|| .++||-|+-+|+....+.| ++|=
T Consensus 279 l~P~a~PLiGmlmfG------------NllrEsGVv~rLs~taqn~-L~ni 316 (433)
T PRK15477 279 LLPDAAPLLGMFCFG------------NLMRESGVVERLSDTVQNG-LINI 316 (433)
T ss_pred HcccHHHHHHHHHHH------------HHHHHhccHHHHHHHHHHH-HHHH
Confidence 345445666777776 5679999999999988876 4444
No 182
>COG4838 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.00 E-value=5e+02 Score=23.45 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=36.6
Q ss_pred hhhHHHHHHHhhchHHHHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhh
Q 001116 669 NFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLL 723 (1152)
Q Consensus 669 ~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~~G~lde~E~~~L~~~i~~~lk~l~ 723 (1152)
+.|-|.+.+.|..-. ..+.+.+-.+-|++|+++...+...+++++..+.
T Consensus 38 qCPlYEEVLDTQMfG------LsrEidFAvrLgLid~e~GKqll~~LEkeLs~LH 86 (92)
T COG4838 38 QCPLYEEVLDTQMFG------LSREIDFAVRLGLIDEEDGKQLLSTLEKELSALH 86 (92)
T ss_pred CCccHHHHHHHHHhh------hhhhhhHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence 457777777775432 2334566668899999999999999999988764
Done!