Query 001116
Match_columns 1152
No_of_seqs 638 out of 4420
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:52:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ptm_A Hyperpolarization-activ 99.9 3.4E-21 1.2E-25 204.0 18.1 188 664-865 8-196 (198)
2 3bpz_A Potassium/sodium hyperp 99.8 1.9E-20 6.6E-25 198.9 17.7 188 664-866 9-197 (202)
3 3ukn_A Novel protein similar t 99.8 6.8E-20 2.3E-24 196.2 13.9 187 664-866 12-202 (212)
4 3mdp_A Cyclic nucleotide-bindi 99.7 3.5E-18 1.2E-22 169.7 11.8 133 735-867 5-140 (142)
5 3of1_A CAMP-dependent protein 99.7 4.2E-18 1.4E-22 185.5 13.2 176 734-921 5-183 (246)
6 3shr_A CGMP-dependent protein 99.7 1.8E-17 6.1E-22 186.7 17.2 174 734-919 37-213 (299)
7 3gyd_A CNMP-BD protein, cyclic 99.7 8.7E-17 3E-21 168.7 18.8 134 734-867 37-170 (187)
8 2pqq_A Putative transcriptiona 99.7 3.3E-17 1.1E-21 163.9 14.5 132 735-866 4-135 (149)
9 3tnp_B CAMP-dependent protein 99.7 8.2E-18 2.8E-22 198.9 11.4 178 734-919 143-323 (416)
10 2qcs_B CAMP-dependent protein 99.7 4.5E-17 1.5E-21 182.5 16.0 173 734-918 37-212 (291)
11 4ev0_A Transcription regulator 99.7 1.1E-16 3.7E-21 171.0 17.7 147 738-886 1-147 (216)
12 2z69_A DNR protein; beta barre 99.7 5.8E-17 2E-21 163.2 14.1 133 734-866 10-143 (154)
13 3d0s_A Transcriptional regulat 99.7 1.5E-16 5E-21 171.6 16.8 149 735-885 5-153 (227)
14 3dn7_A Cyclic nucleotide bindi 99.7 1.5E-16 5.1E-21 167.2 15.4 132 735-866 6-138 (194)
15 4din_B CAMP-dependent protein 99.7 3.9E-17 1.3E-21 190.9 11.9 174 734-919 128-304 (381)
16 1zyb_A Transcription regulator 99.7 5.1E-17 1.8E-21 176.2 11.2 159 726-886 8-169 (232)
17 3fx3_A Cyclic nucleotide-bindi 99.7 1.8E-16 6.3E-21 172.0 14.3 152 733-886 8-159 (237)
18 3idb_B CAMP-dependent protein 99.7 4.2E-17 1.4E-21 166.4 8.5 125 734-859 36-160 (161)
19 3dv8_A Transcriptional regulat 99.7 3.5E-16 1.2E-20 167.5 16.0 132 736-867 3-136 (220)
20 3e97_A Transcriptional regulat 99.7 2.7E-16 9.3E-21 169.9 14.6 135 733-867 3-137 (231)
21 3dkw_A DNR protein; CRP-FNR, H 99.7 1.8E-16 6.2E-21 170.6 11.1 152 733-886 6-158 (227)
22 3iwz_A CAP-like, catabolite ac 99.7 1.1E-15 3.8E-20 164.8 16.8 150 735-886 10-165 (230)
23 3ocp_A PRKG1 protein; serine/t 99.6 7.4E-16 2.5E-20 152.9 12.2 118 734-856 21-138 (139)
24 1vp6_A CNBD, cyclic-nucleotide 99.6 4.7E-16 1.6E-20 153.8 10.4 125 735-866 10-134 (138)
25 4f8a_A Potassium voltage-gated 99.6 1E-15 3.5E-20 155.2 12.5 121 735-860 26-148 (160)
26 2gau_A Transcriptional regulat 99.6 1.2E-15 4.1E-20 165.0 12.4 144 740-885 14-157 (232)
27 3ryp_A Catabolite gene activat 99.6 5.9E-15 2E-19 156.7 16.4 142 742-885 2-144 (210)
28 4ava_A Lysine acetyltransferas 99.6 3.5E-15 1.2E-19 170.7 15.5 129 735-865 12-140 (333)
29 3pna_A CAMP-dependent protein 99.6 1.3E-15 4.3E-20 154.3 10.4 119 734-857 36-154 (154)
30 3shr_A CGMP-dependent protein 99.6 3.2E-15 1.1E-19 168.2 12.8 133 735-867 156-289 (299)
31 2fmy_A COOA, carbon monoxide o 99.6 6.6E-15 2.3E-19 157.9 14.6 142 735-886 3-144 (220)
32 2oz6_A Virulence factor regula 99.6 1.3E-14 4.3E-19 153.8 16.2 137 747-885 1-141 (207)
33 1o7f_A CAMP-dependent RAP1 gua 99.6 1E-14 3.5E-19 174.9 16.3 119 734-853 40-160 (469)
34 3kcc_A Catabolite gene activat 99.6 1.5E-14 5.1E-19 159.8 16.2 141 743-885 53-194 (260)
35 1o5l_A Transcriptional regulat 99.6 1.5E-14 5.1E-19 154.6 15.7 126 741-866 4-130 (213)
36 1wgp_A Probable cyclic nucleot 99.6 4.7E-16 1.6E-20 153.7 1.7 120 734-854 4-134 (137)
37 1ft9_A Carbon monoxide oxidati 99.6 1.7E-14 5.7E-19 155.1 13.6 140 737-886 1-140 (222)
38 3e6c_C CPRK, cyclic nucleotide 99.5 6.7E-14 2.3E-18 153.3 16.1 143 738-885 11-153 (250)
39 2qcs_B CAMP-dependent protein 99.5 1.5E-13 5.1E-18 153.7 16.6 126 735-860 156-282 (291)
40 3of1_A CAMP-dependent protein 99.5 6.1E-14 2.1E-18 152.4 10.6 116 735-854 124-239 (246)
41 2d93_A RAP guanine nucleotide 99.5 3.3E-14 1.1E-18 140.2 7.4 111 735-850 15-127 (134)
42 3tnp_B CAMP-dependent protein 99.5 8.2E-14 2.8E-18 164.6 11.2 132 735-866 266-403 (416)
43 4f7z_A RAP guanine nucleotide 99.5 3E-13 1E-17 177.0 16.9 117 735-852 41-159 (999)
44 4din_B CAMP-dependent protein 99.4 1.7E-13 5.7E-18 160.1 11.5 129 735-863 247-376 (381)
45 3la7_A Global nitrogen regulat 99.4 8.2E-13 2.8E-17 144.1 15.9 119 749-867 30-153 (243)
46 2bgc_A PRFA; bacterial infecti 99.4 6.5E-13 2.2E-17 144.4 14.9 139 745-886 2-145 (238)
47 1zcd_A Na(+)/H(+) antiporter 1 99.3 7.7E-12 2.6E-16 143.4 15.7 272 99-408 61-348 (388)
48 3beh_A MLL3241 protein; transm 99.3 1.2E-13 4.2E-18 159.7 -0.2 124 736-866 228-351 (355)
49 1o7f_A CAMP-dependent RAP1 gua 99.3 3E-12 1E-16 153.4 10.1 121 735-859 336-458 (469)
50 3b02_A Transcriptional regulat 99.3 8.7E-12 3E-16 131.0 11.8 116 762-886 2-117 (195)
51 2zcw_A TTHA1359, transcription 99.2 4.1E-11 1.4E-15 126.5 9.6 121 756-886 2-124 (202)
52 3cf6_E RAP guanine nucleotide 99.2 5.6E-11 1.9E-15 148.4 11.0 115 735-853 31-147 (694)
53 4f7z_A RAP guanine nucleotide 99.1 1.5E-10 5.1E-15 151.5 12.6 109 735-847 336-446 (999)
54 2l0e_A Sodium/hydrogen exchang 98.1 1.8E-07 6.1E-12 67.8 -1.1 31 157-187 2-32 (33)
55 2htg_A NHE-1, NHE1 isoform of 97.5 3.3E-06 1.1E-10 58.2 -3.3 26 184-209 1-26 (28)
56 2k3c_A TMIX peptide; membrane 96.7 1.8E-05 6.1E-10 57.6 -6.4 30 268-298 2-31 (33)
57 2kbv_A Sodium/hydrogen exchang 96.4 0.0013 4.4E-08 45.6 1.8 25 387-411 2-26 (28)
58 3zux_A Transporter, ASBTNM; tr 93.9 10 0.00035 42.5 28.8 111 102-218 45-158 (332)
59 1y4e_A Sodium/hydrogen exchang 77.6 0.12 4E-06 35.5 -2.9 23 96-118 2-24 (27)
60 3idb_B CAMP-dependent protein 62.5 11 0.00037 36.7 6.2 48 871-919 44-94 (161)
61 1vp6_A CNBD, cyclic-nucleotide 60.8 10 0.00036 35.5 5.6 49 871-920 17-68 (138)
62 3bpz_A Potassium/sodium hyperp 59.6 20 0.00067 36.4 7.8 67 850-919 59-128 (202)
63 3mdp_A Cyclic nucleotide-bindi 58.8 11 0.00036 35.5 5.2 48 871-919 12-62 (142)
64 2ptm_A Hyperpolarization-activ 58.6 18 0.00062 36.5 7.3 67 850-919 58-127 (198)
65 4f8a_A Potassium voltage-gated 58.5 12 0.0004 36.1 5.6 48 871-919 33-83 (160)
66 2gau_A Transcriptional regulat 57.6 8.8 0.0003 39.8 4.8 49 870-919 15-66 (232)
67 3ocp_A PRKG1 protein; serine/t 56.1 12 0.0004 35.3 5.0 48 871-919 29-79 (139)
68 3pna_A CAMP-dependent protein 54.3 14 0.00047 35.6 5.3 48 871-919 44-94 (154)
69 1wgp_A Probable cyclic nucleot 52.5 11 0.00038 35.3 4.1 47 871-918 12-61 (137)
70 2z69_A DNR protein; beta barre 48.2 13 0.00045 35.4 4.0 48 871-919 18-68 (154)
71 2pqq_A Putative transcriptiona 43.3 19 0.00065 33.9 4.2 47 871-918 11-60 (149)
72 3fx3_A Cyclic nucleotide-bindi 42.6 27 0.00093 36.1 5.7 48 871-919 17-67 (237)
73 2ozj_A Cupin 2, conserved barr 42.4 86 0.0029 28.3 8.5 63 763-837 44-107 (114)
74 3dkw_A DNR protein; CRP-FNR, H 40.9 37 0.0013 34.7 6.3 48 871-919 15-65 (227)
75 2d93_A RAP guanine nucleotide 40.9 13 0.00043 34.9 2.5 48 871-919 22-73 (134)
76 3rns_A Cupin 2 conserved barre 40.5 72 0.0025 33.2 8.6 68 759-837 39-106 (227)
77 3ryp_A Catabolite gene activat 40.1 47 0.0016 33.3 7.0 45 873-918 4-51 (210)
78 3iwz_A CAP-like, catabolite ac 39.1 22 0.00077 36.4 4.3 47 871-918 17-66 (230)
79 3gyd_A CNMP-BD protein, cyclic 38.4 19 0.00064 36.2 3.5 48 871-919 45-95 (187)
80 3dn7_A Cyclic nucleotide bindi 38.1 21 0.00071 35.7 3.7 47 871-918 13-62 (194)
81 3ukn_A Novel protein similar t 37.8 12 0.00041 38.4 1.8 48 871-919 81-131 (212)
82 3fjs_A Uncharacterized protein 37.3 94 0.0032 28.4 7.9 66 759-835 38-103 (114)
83 3dv8_A Transcriptional regulat 35.6 23 0.00077 36.1 3.6 47 871-918 9-58 (220)
84 3lwc_A Uncharacterized protein 34.2 2.2E+02 0.0074 26.3 9.9 44 761-811 44-87 (119)
85 4ev0_A Transcription regulator 34.0 24 0.00083 35.8 3.5 47 871-918 5-54 (216)
86 1zyb_A Transcription regulator 31.5 36 0.0012 35.2 4.4 47 871-918 24-75 (232)
87 2pfw_A Cupin 2, conserved barr 30.6 2E+02 0.0068 25.6 9.0 67 760-837 37-103 (116)
88 1yhf_A Hypothetical protein SP 29.7 1.8E+02 0.0061 26.0 8.4 66 761-837 44-109 (115)
89 2oz6_A Virulence factor regula 27.8 53 0.0018 32.9 4.8 42 876-918 1-45 (207)
90 3cf6_E RAP guanine nucleotide 27.0 37 0.0013 42.0 4.0 81 836-920 5-90 (694)
91 3kcc_A Catabolite gene activat 25.7 1.1E+02 0.0036 32.3 6.9 43 875-918 56-101 (260)
92 3ibm_A Cupin 2, conserved barr 25.6 2E+02 0.0068 28.3 8.5 87 760-856 59-157 (167)
93 4ava_A Lysine acetyltransferas 25.2 42 0.0014 36.8 3.8 48 871-919 19-69 (333)
94 3hhm_B NISH2 P85alpha; PI3KCA, 23.7 1.9E+02 0.0065 32.7 8.7 32 738-774 298-330 (373)
95 2q67_A Potassium channel prote 23.6 1.3E+02 0.0046 27.7 6.3 49 122-171 15-63 (114)
96 2bgc_A PRFA; bacterial infecti 23.5 68 0.0023 33.2 4.8 44 875-918 3-50 (238)
97 3jzv_A Uncharacterized protein 22.1 1.6E+02 0.0054 29.1 6.9 44 762-811 58-101 (166)
98 3e97_A Transcriptional regulat 22.0 31 0.0011 35.5 1.7 48 871-919 12-62 (231)
99 2fmy_A COOA, carbon monoxide o 20.0 36 0.0012 34.7 1.7 46 871-917 10-58 (220)
No 1
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.86 E-value=3.4e-21 Score=203.97 Aligned_cols=188 Identities=14% Similarity=0.222 Sum_probs=165.3
Q ss_pred HHHHHhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHhccchhHH-HhhhhHHHHHHHHHhhcCCCCCCCCChhhHHhcCC
Q 001116 664 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHP 742 (1152)
Q Consensus 664 ~~l~~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~~G~lde~E-~~~L~~~i~~~lk~l~~~p~~~~~~~~~~lL~~~p 742 (1152)
.+++.+..++.++|+.++++..+..++++|+++.|+....++++ ...|.+.+..++..... .++++++|
T Consensus 8 ~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~----------~~~l~~~~ 77 (198)
T 2ptm_A 8 RQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNC----------RDLVASVP 77 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHT----------HHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHH----------HHHHhcCc
Confidence 45677777888999999999999999999999999876677666 44477777777664332 57899999
Q ss_pred CCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCc
Q 001116 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (1152)
Q Consensus 743 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r 822 (1152)
+|++++++.++.++..++.+.+.+|++|+++||.++++|||.+|.|+++. .+|+ .+..+++|++|||.+++.+.++
T Consensus 78 ~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~ 153 (198)
T 2ptm_A 78 FFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERR 153 (198)
T ss_dssp GGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCC
T ss_pred chhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999987 4454 4679999999999999999999
Q ss_pred eeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 001116 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS 865 (1152)
Q Consensus 823 ~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la 865 (1152)
.++++|.++|+++.|++++|.++++++|.+...+++.++.++.
T Consensus 154 ~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 154 VASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred ceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888887766554
No 2
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.84 E-value=1.9e-20 Score=198.92 Aligned_cols=188 Identities=16% Similarity=0.237 Sum_probs=165.2
Q ss_pred HHHHHhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHhccchhHH-HhhhhHHHHHHHHHhhcCCCCCCCCChhhHHhcCC
Q 001116 664 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHP 742 (1152)
Q Consensus 664 ~~l~~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~~G~lde~E-~~~L~~~i~~~lk~l~~~p~~~~~~~~~~lL~~~p 742 (1152)
..++.+..++.++|+.++++..+..++++|+++.|+....++++ ...|.+.+..++..... .++++++|
T Consensus 9 ~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~----------~~~l~~~~ 78 (202)
T 3bpz_A 9 RQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNC----------RKLVASMP 78 (202)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHT----------HHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHH----------HHHHhcCC
Confidence 45677778889999999999999999999999999866666665 44577777777654222 57899999
Q ss_pred CCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCc
Q 001116 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (1152)
Q Consensus 743 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r 822 (1152)
+|.+++++.++.|+..++.+.+.+|++|+++||+++++|||.+|.|+++. .+|+.. .+++|++|||.+++.+.++
T Consensus 79 ~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~~---~l~~G~~fGe~~~~~~~~~ 153 (202)
T 3bpz_A 79 LFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKEM---KLSDGSYFGEICLLTRGRR 153 (202)
T ss_dssp HHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCCE---EEETTCEECHHHHHHCSBC
T ss_pred chhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeEE---EEcCCCEeccHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999974 345443 5799999999999999999
Q ss_pred eeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 823 ~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
.++++|.++|+++.|++++|.++++++|.+...+.+.++.++..
T Consensus 154 ~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~ 197 (202)
T 3bpz_A 154 TASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 197 (202)
T ss_dssp SSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred ccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988887777764
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.81 E-value=6.8e-20 Score=196.16 Aligned_cols=187 Identities=14% Similarity=0.222 Sum_probs=161.4
Q ss_pred HHHHHhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHhcc-chhHH-HhhhhHHHHHHHHHhhcCCCCCCCCChhhHHhcC
Q 001116 664 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGL-LEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAH 741 (1152)
Q Consensus 664 ~~l~~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~~G~-lde~E-~~~L~~~i~~~lk~l~~~p~~~~~~~~~~lL~~~ 741 (1152)
.+++.+..++.++|+.++++..+..++++|+++.|+... .++.+ ...|.+.+..++....+ ..++ ++
T Consensus 12 ~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~----------~~l~-~~ 80 (212)
T 3ukn_A 12 SLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLN----------KELL-QL 80 (212)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCC----------CGGG-GS
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHH----------HHHH-hc
Confidence 445777888999999999999999999999999997443 44433 45566666666653222 2344 89
Q ss_pred CCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCC-
Q 001116 742 PLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK- 820 (1152)
Q Consensus 742 plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~- 820 (1152)
|+|++++++.++.++..++.+.+.+|++|+++||.++++|||.+|.|+++.. | .++..+++|++|||.+++.+.
T Consensus 81 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~---~--~~~~~l~~G~~fGe~~~~~~~~ 155 (212)
T 3ukn_A 81 PLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD---N--TVLAILGKGDLIGSDSLTKEQV 155 (212)
T ss_dssp GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS---S--CEEEEECTTCEEECSCCSSSSC
T ss_pred HHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC---C--eEEEEecCCCCcCcHHhccCCC
Confidence 9999999999999999999999999999999999999999999999999862 3 446789999999999999998
Q ss_pred -CceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 821 -PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 821 -~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
++.++++|.++|+++.|++++|.++++++|.+...+++.++.+++.
T Consensus 156 ~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 202 (212)
T 3ukn_A 156 IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202 (212)
T ss_dssp CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEE
T ss_pred CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999988877765
No 4
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.75 E-value=3.5e-18 Score=169.71 Aligned_cols=133 Identities=15% Similarity=0.170 Sum_probs=120.3
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEE---EeEeCCCCcc
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSL---HPVFTHGSNL 811 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i---~~~l~~G~~f 811 (1152)
.++++++|+|+++++++++.+...++.+.+++|++|+++|++++++|+|.+|.|+++..+.+|++.+ +..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 4689999999999999999999999999999999999999999999999999999998888887777 8899999999
Q ss_pred chhhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 001116 812 GLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRI 867 (1152)
Q Consensus 812 GE~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~ 867 (1152)
||.+++.+.++.++++|.++|+++.|++++|.++++++|.+...+++.++..++++
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~r 140 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLAR 140 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999888864
No 5
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.2e-18 Score=185.47 Aligned_cols=176 Identities=15% Similarity=0.202 Sum_probs=155.1
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
+.++|+++|+|+++++++++.+.+.++.+.+++|++|+++||+++++|+|.+|.|+++.. ++. +..+++|++|||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~---~~~--~~~~~~g~~fGe 79 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVN---DNK--VNSSGPGSSFGE 79 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEEST---TSC--CEEECTTCEECH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEEC---CEE--EEecCCCCeeeh
Confidence 467899999999999999999999999999999999999999999999999999999862 322 468999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHhhhhcc
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 893 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~~~~~l~~ 893 (1152)
.+++.+.|+.++++|.++|+++.|++++|.+++.++|..+..++..+...+ ..+..++..+++.+. .......
T Consensus 80 ~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~f~~l~~~~l~~l~-~~~~~~~ 152 (246)
T 3of1_A 80 LALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSM------PVLKSLTTYDRAKLA-DALDTKI 152 (246)
T ss_dssp HHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHC------GGGTTCCHHHHHHHH-HTCEEEE
T ss_pred hHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhC------hhhhcCCHHHHHHHH-HhhheEE
Confidence 999999999999999999999999999999999999988887776655444 356788888888776 5778889
Q ss_pred ccCCcEEEecCc---EEEEEEeeeeeecccc
Q 001116 894 CLRGEIIEIPYH---CIGFLLEGFIKTHGLQ 921 (1152)
Q Consensus 894 y~~g~~i~i~~~---~~~ILl~G~V~~~~~~ 921 (1152)
|.+|+.+..+++ .+|++.+|.|+.....
T Consensus 153 ~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~ 183 (246)
T 3of1_A 153 YQPGETIIREGDQGENFYLIEYGAVDVSKKG 183 (246)
T ss_dssp ECTTCEEECTTSBCCEEEEEEECEEEEEETT
T ss_pred eCCCCEEEeCCCcCCEEEEEEecEEEEEEcC
Confidence 999999888775 8999999999876543
No 6
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.74 E-value=1.8e-17 Score=186.74 Aligned_cols=174 Identities=14% Similarity=0.129 Sum_probs=153.1
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
+.++++++|+|+++++++++.+++.++.+.+.+|++|+++||.++++|+|.+|.|+++.. | ..+..+++|++|||
T Consensus 37 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~---g--~~~~~~~~G~~fGe 111 (299)
T 3shr_A 37 IKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKE---G--VKLCTMGPGKVFGE 111 (299)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEET---T--EEEEEECTTCEESC
T ss_pred HHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEEC---C--EEEEEeCCCCeeeH
Confidence 457899999999999999999999999999999999999999999999999999999652 3 34678999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHhhhhcc
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 893 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~~~~~l~~ 893 (1152)
.+++.+.||.++++|.++|+++.|++++|++++.++|......+..+...+ ..+..++.++++.+. .......
T Consensus 112 ~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~------~~f~~l~~~~l~~l~-~~~~~~~ 184 (299)
T 3shr_A 112 LAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSV------PTFQSLPEEILSKLA-DVLEETH 184 (299)
T ss_dssp SGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTS------HHHHHSCHHHHHHHT-TTCEEEE
T ss_pred hHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhC------HHhhhCCHHHHHHHH-HhccEEE
Confidence 999999999999999999999999999999999999987766665544433 467788988888776 4677889
Q ss_pred ccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 894 CLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 894 y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
|.+|+.+..+++ .+|+|++|.|+...
T Consensus 185 ~~~g~~I~~~G~~~~~~yiI~~G~v~~~~ 213 (299)
T 3shr_A 185 YENGEYIIRQGARGDTFFIISKGKVNVTR 213 (299)
T ss_dssp ECTTCEEECTTCEECEEEEEEESEEEEEE
T ss_pred ECCCCEEEeCCCCCCEEEEEEeeEEEEEE
Confidence 999999988887 89999999998754
No 7
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.72 E-value=8.7e-17 Score=168.73 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=127.3
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
..++++++|+|+++++++++.+...++.+.+++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++|||
T Consensus 37 ~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe 116 (187)
T 3gyd_A 37 ILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGE 116 (187)
T ss_dssp HHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESH
T ss_pred HHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeee
Confidence 45789999999999999999999999999999999999999999999999999999999998898888899999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRI 867 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~ 867 (1152)
.+++.+.++.++++|.++|+++.|++++|.++++++|.+...+++.++..+++.
T Consensus 117 ~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~r 170 (187)
T 3gyd_A 117 MSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTAR 170 (187)
T ss_dssp HHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998777777753
No 8
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.72 E-value=3.3e-17 Score=163.90 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=126.0
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~ 814 (1152)
.++++++|+|.++++++++.+...++.+.+++|++|+++|++++++|+|.+|.|+++..+.+|++..+..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 57899999999999999999999999999999999999999999999999999999999888888888999999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 815 ~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
+++.+.++.++++|.++|+++.|++++|.++++++|.+...+++.+..++..
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~ 135 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRK 135 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888877764
No 9
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.72 E-value=8.2e-18 Score=198.86 Aligned_cols=178 Identities=11% Similarity=0.133 Sum_probs=157.4
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
+.++++++++|++|++++++.|+.+++.+.|.+|++|+++||.++++|+|.+|.|+++. +.+|+...+..+++|++|||
T Consensus 143 i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~~fGe 221 (416)
T 3tnp_B 143 LQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGE 221 (416)
T ss_dssp HHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCCEECG
T ss_pred HHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCCEEee
Confidence 45789999999999999999999999999999999999999999999999999999998 55677777889999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHhhhhcc
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 893 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~~~~~l~~ 893 (1152)
.+++.+.||.++++|.++|++|.|++++|++++.++|.....++..+...+ ..+..++..++..+. .......
T Consensus 222 ~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v------~lf~~Ls~~el~~L~-~~l~~~~ 294 (416)
T 3tnp_B 222 LALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL------PFLKSLEVSERLKVV-DVIGTKV 294 (416)
T ss_dssp GGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGC------GGGTTCCHHHHHHHH-HHCEEEE
T ss_pred HHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhhc------hHhhcCCHHHHHHHH-hhceEEE
Confidence 999999999999999999999999999999999999988766555443333 356688888887766 5778889
Q ss_pred ccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 894 CLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 894 y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
|.+|+.+..+++ .+|||++|.|+...
T Consensus 295 ~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~ 323 (416)
T 3tnp_B 295 YNDGEQIIAQGDLADSFFIVESGEVKITM 323 (416)
T ss_dssp ECTTCEEECTTSCCCEEEEEEEEEEEEEC
T ss_pred ECCCCEEEeCCCcCCEEEEEEeCEEEEEE
Confidence 999999988876 89999999998754
No 10
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.71 E-value=4.5e-17 Score=182.52 Aligned_cols=173 Identities=16% Similarity=0.211 Sum_probs=153.9
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
+.++++++|+|+++++++++.+...++.+.+.+|++|+++||.++++|+|.+|.|+++. +| ..+..+++|++|||
T Consensus 37 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g--~~~~~l~~G~~fGe 111 (291)
T 2qcs_B 37 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGSFGE 111 (291)
T ss_dssp HHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT--EEEEEECTTCEECG
T ss_pred HHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC--eEEEEcCCCCccch
Confidence 45778999999999999999999999999999999999999999999999999999987 33 34678999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHhhhhcc
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 893 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~~~~~l~~ 893 (1152)
.+++.+.|+.++++|.++|+++.|++++|.+++.++|.+...++..+..++ ..+..++..++..+. +......
T Consensus 112 ~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~------~lf~~l~~~~~~~l~-~~~~~~~ 184 (291)
T 2qcs_B 112 LALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKV------SILESLDKWERLTVA-DALEPVQ 184 (291)
T ss_dssp GGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTC------GGGTTCCHHHHHHHH-HHCEEEE
T ss_pred HHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhc------hHhhhCCHHHHHHHH-hhcEEEE
Confidence 999999999999999999999999999999999999999988887765544 356678888777665 4677889
Q ss_pred ccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 894 CLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 894 y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
|.+|+.+..+++ .+|+|++|.|+..
T Consensus 185 ~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 212 (291)
T 2qcs_B 185 FEDGQKIVVQGEPGDEFFIILEGSAAVL 212 (291)
T ss_dssp ECTTCEEECTTSCCCEEEEEEEEEEEEE
T ss_pred ECCCCEEEeCCccCCEEEEEEeCEEEEE
Confidence 999999888776 8999999999875
No 11
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.71 E-value=1.1e-16 Score=170.99 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=131.5
Q ss_pred HhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhh
Q 001116 738 ISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL 817 (1152)
Q Consensus 738 L~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL 817 (1152)
|+++|+|+++++++++.+...++.+.+++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 46799999999999999999999999999999999999999999999999999999888998889999999999999999
Q ss_pred cCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 818 IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 818 ~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
.+.++.++++|.++|+++.|++++|.+++.++|.+...+++.++.++.... +....+...+.+.+++
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~Rl~ 147 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREAD--LELDLLSFEEARNRVA 147 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999988887642 3334555566666553
No 12
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.71 E-value=5.8e-17 Score=163.17 Aligned_cols=133 Identities=16% Similarity=0.237 Sum_probs=121.3
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
..++++++|+|.++++++++.+...++.+.+++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+
T Consensus 10 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~ 89 (154)
T 2z69_A 10 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE 89 (154)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESG
T ss_pred HHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeecc
Confidence 45789999999999999999999999999999999999999999999999999999998887788877889999999999
Q ss_pred hhhhcCCC-ceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 814 YEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 814 ~~lL~~~~-r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
.+++.+.+ +.++++|.++|+++.|++++|.++++++|.+...+++.++.++..
T Consensus 90 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~ 143 (154)
T 2z69_A 90 AMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQ 143 (154)
T ss_dssp GGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 99999988 999999999999999999999999999999999999888777664
No 13
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.70 E-value=1.5e-16 Score=171.60 Aligned_cols=149 Identities=17% Similarity=0.268 Sum_probs=134.0
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~ 814 (1152)
.++++++|+|.++++++++.+...++.+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.++..+++|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 56899999999999999999999999999999999999999999999999999999999988988889999999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHH
Q 001116 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALI 885 (1152)
Q Consensus 815 ~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll 885 (1152)
+++.+.|+.++++|.++|+++.|++++|.+++.++|.+...+++.++.++.... +....+...+.+.++
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rl 153 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTN--NNLADLIFTDVPGRV 153 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHSCHHHHH
T ss_pred HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHH
Confidence 999999999999999999999999999999999999999999999888887642 222334444444444
No 14
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.69 E-value=1.5e-16 Score=167.18 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=125.4
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~ 814 (1152)
..+++++|.|.++++++++.+.+.++.+.+++|++|+++||+++++|+|.+|.|+++..+.+|++.++..+++|++|||.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 57889999999999999999999999999999999999999999999999999999999888999889999999999998
Q ss_pred -hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 815 -EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 815 -~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
+++.+.|+.++++|.++|+++.|++++|.+++.++|.+...+.+.+..++..
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~ 138 (194)
T 3dn7_A 86 MAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAA 138 (194)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999999999988888877765
No 15
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.69 E-value=3.9e-17 Score=190.87 Aligned_cols=174 Identities=16% Similarity=0.215 Sum_probs=153.2
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
+.++++++|+|++|++++++.++.+++.+.+.+|++|+++||.++++|+|.+|.|+++. +| ..+..+++|++|||
T Consensus 128 i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~--~~v~~l~~G~~fGe 202 (381)
T 4din_B 128 LAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NG--EWVTNISEGGSFGE 202 (381)
T ss_dssp HHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TT--EEEEEEESSCCBCG
T ss_pred HHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CC--eEeeeCCCCCEEEc
Confidence 35689999999999999999999999999999999999999999999999999999996 23 24568999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHhhhhcc
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 893 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~~~~~l~~ 893 (1152)
.+++.+.||.++++|.++|++|.|++++|++++.++|.....++..+..++. .+..++..++..+. .......
T Consensus 203 ~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~------~f~~Ls~~el~~l~-~~~~~~~ 275 (381)
T 4din_B 203 LALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVS------ILESLEKWERLTVA-DALEPVQ 275 (381)
T ss_dssp GGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCS------TTTTCCTTHHHHHH-TTCBCCC
T ss_pred hHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhH------HHHhccHHHHHHHH-Hhhhhcc
Confidence 9999999999999999999999999999999999999999888876655543 45677777777655 4677789
Q ss_pred ccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 894 CLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 894 y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
|.+|+.+..+++ .+|||++|.|+...
T Consensus 276 ~~~ge~I~~eGd~~~~~yiI~~G~v~v~~ 304 (381)
T 4din_B 276 FEDGEKIVVQGEPGDDFYIITEGTASVLQ 304 (381)
T ss_dssp BCSSCBSSCTTSBCCEEEEEEESCEEEEC
T ss_pred CCCCCEEEeCCCcCCEEEEEEeCEEEEEE
Confidence 999999877765 89999999998764
No 16
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.69 E-value=5.1e-17 Score=176.23 Aligned_cols=159 Identities=13% Similarity=0.057 Sum_probs=140.4
Q ss_pred CCCCCCCChhhHHhcCCCCCCCCccchhHhhcc--ceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEe
Q 001116 726 PPLVKFPKISDLISAHPLLRELPPSVREPLELS--TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHP 803 (1152)
Q Consensus 726 p~~~~~~~~~~lL~~~plF~~Ls~e~l~~L~~~--~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~ 803 (1152)
|+..++|+..++++++|+|+++++++++.+..+ ++.+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.++.
T Consensus 8 ~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~ 87 (232)
T 1zyb_A 8 HHHHHMETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIE 87 (232)
T ss_dssp CHHHHHHHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEE
T ss_pred hhHhHHHHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEE
Confidence 333445667788999999999999999999998 999999999999999999999999999999999988888888889
Q ss_pred EeCCCCccchhhhhcCCC-ceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHH
Q 001116 804 VFTHGSNLGLYEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMR 882 (1152)
Q Consensus 804 ~l~~G~~fGE~~lL~~~~-r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr 882 (1152)
.+++|++|||.+++.+.+ +.++++|.++|+++.|++++|.+++.++|.+...+++.++.++.... +....+...+.+
T Consensus 88 ~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~--~~~~~l~~~~~~ 165 (232)
T 1zyb_A 88 QIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLY--SRLWDEPTLDLK 165 (232)
T ss_dssp EEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHH--HHTTSCCCCSHH
T ss_pred EccCCCeeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCHH
Confidence 999999999999999988 99999999999999999999999999999999999999988887632 333455555666
Q ss_pred HHHH
Q 001116 883 ALIA 886 (1152)
Q Consensus 883 ~ll~ 886 (1152)
.+++
T Consensus 166 ~Rl~ 169 (232)
T 1zyb_A 166 SKII 169 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6663
No 17
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.68 E-value=1.8e-16 Score=171.98 Aligned_cols=152 Identities=21% Similarity=0.236 Sum_probs=137.6
Q ss_pred ChhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccc
Q 001116 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (1152)
Q Consensus 733 ~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fG 812 (1152)
...++++++|+|+++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence 34678999999999999999999999999999999999999999999999999999999999899988899999999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 813 E~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
+.+++.+.|+.++++|.++|+++.|++++|.+++.++|.+...+++.++.++.... +....+...+.+.+++
T Consensus 88 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rl~ 159 (237)
T 3fx3_A 88 EAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLV--AQLEQLKAQTGAQRVA 159 (237)
T ss_dssp HHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHH
T ss_pred hHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887642 3334555555555553
No 18
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.68 E-value=4.2e-17 Score=166.35 Aligned_cols=125 Identities=10% Similarity=0.159 Sum_probs=116.2
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
+.++++++|+|+++++++++.+...++.+.+.+|++|+++|++++++|+|.+|.|+++. +.+|+...+..+++|++|||
T Consensus 36 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~fGe 114 (161)
T 3idb_B 36 LQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGE 114 (161)
T ss_dssp HHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCCEECG
T ss_pred HHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCCEech
Confidence 35789999999999999999999999999999999999999999999999999999999 66787888889999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHH
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQ 859 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~ 859 (1152)
.+++.+.++.++++|.++|+++.|++++|.++++++|.++..+|.+
T Consensus 115 ~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 160 (161)
T 3idb_B 115 LALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYES 160 (161)
T ss_dssp GGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC---
T ss_pred HHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988776654
No 19
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.68 E-value=3.5e-16 Score=167.55 Aligned_cols=132 Identities=11% Similarity=0.112 Sum_probs=124.8
Q ss_pred hHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCc--cch
Q 001116 736 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSN--LGL 813 (1152)
Q Consensus 736 ~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~--fGE 813 (1152)
++++++|+|+++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.++..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 578999999999999999999999999999999999999999999999999999999999999888899999999 899
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRI 867 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~ 867 (1152)
.+++.+.|+.++++|.++|+++.|++++|.+++.++|.+...+++.++.++...
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 136 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDV 136 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888887754
No 20
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.67 E-value=2.7e-16 Score=169.94 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=126.9
Q ss_pred ChhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccc
Q 001116 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (1152)
Q Consensus 733 ~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fG 812 (1152)
+..++|+++|+|.++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||
T Consensus 3 ~~~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G 82 (231)
T 3e97_A 3 GRLDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVG 82 (231)
T ss_dssp CCHHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEES
T ss_pred hHHHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEe
Confidence 34689999999999999999999999999999999999999999999999999999999999889888899999999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 001116 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRI 867 (1152)
Q Consensus 813 E~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~ 867 (1152)
+.+++.+.|+.++++|.++|+++.|++++|.+++.++|.+...+++.++.++...
T Consensus 83 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 137 (231)
T 3e97_A 83 ETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFL 137 (231)
T ss_dssp TTTTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred eHHHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888888753
No 21
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.66 E-value=1.8e-16 Score=170.59 Aligned_cols=152 Identities=15% Similarity=0.236 Sum_probs=136.8
Q ss_pred ChhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccc
Q 001116 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 812 (1152)
Q Consensus 733 ~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fG 812 (1152)
...++++++|+|+++++++++.+...++.+.+++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||
T Consensus 6 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G 85 (227)
T 3dkw_A 6 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFA 85 (227)
T ss_dssp SSHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEES
T ss_pred hHHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEee
Confidence 45789999999999999999999999999999999999999999999999999999999988888888888999999999
Q ss_pred hhhhhcCCC-ceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 813 LYEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 813 E~~lL~~~~-r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
+.+++.+.| +.++++|.++|+++.|++++|.+++.++|.+...+++.++.++.... +....+...+.+.+++
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~Rl~ 158 (227)
T 3dkw_A 86 EAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRI--DEIETLSLKNATHRVV 158 (227)
T ss_dssp CTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred eHHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHH
Confidence 999999999 99999999999999999999999999999999999999998887642 3334555556666663
No 22
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.65 E-value=1.1e-15 Score=164.80 Aligned_cols=150 Identities=12% Similarity=0.128 Sum_probs=123.5
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~ 814 (1152)
...+++.++|.++++++++.+.+.++.+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.++..+++|++|||.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 56799999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred hhhcCC-CceeEEEEcceEEEEEEeHHHHHHHHhhC-----HHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 815 EVLIGK-PYMSDMVTDSVVLCFFIESDKILSILRSD-----PAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 815 ~lL~~~-~r~atv~A~t~~~l~~I~~~~f~~ll~~~-----p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
+++.+. |+.++++|.++|+++.|++++|.+++.++ |.+...+.+.++.++.... +....+...+.+.+++
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rl~ 165 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTT--RKASRLAFLDVTDRIV 165 (230)
T ss_dssp GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCHHHHHH
T ss_pred hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHH
Confidence 999875 79999999999999999999999999999 9999999999888887642 3333455555555553
No 23
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.64 E-value=7.4e-16 Score=152.92 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=103.6
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
..++++++|+|+++++++++.+...++.+.+.+|++|+++|+.++++|+|.+|.|++.. +| ..+..+++|++|||
T Consensus 21 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g--~~~~~~~~G~~fGe 95 (139)
T 3ocp_A 21 IKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG--VKLCTMGPGKVFGE 95 (139)
T ss_dssp HHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TT--EEEEEECTTCEESC
T ss_pred HHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CC--EEEEEeCCCCEecc
Confidence 35789999999999999999999999999999999999999999999999999999965 33 35678999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHH
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFL 856 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i 856 (1152)
.+++.+.++.++++|.++|+++.|++++|.++++++|.++++.
T Consensus 96 ~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~ 138 (139)
T 3ocp_A 96 LAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 138 (139)
T ss_dssp HHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred HHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence 9999999999999999999999999999999999999988654
No 24
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.63 E-value=4.7e-16 Score=153.76 Aligned_cols=125 Identities=16% Similarity=0.277 Sum_probs=115.4
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~ 814 (1152)
.++++++|+|+++++++++.+...++.+.+++|++|+++|++++++|+|.+|.|+++..+ ...+++|++||+.
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-------~~~~~~G~~~G~~ 82 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGEM 82 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-------CEEECTTCEECHH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-------cceECCCCEeeeh
Confidence 467999999999999999999999999999999999999999999999999999998654 1378999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 815 ~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
+++.+.++.++++|.++|+++.|++++|.++++++|.+...+++.++.++.+
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~~ 134 (138)
T 1vp6_A 83 ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGA 134 (138)
T ss_dssp HHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC-
T ss_pred HhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999988887776653
No 25
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.63 E-value=1e-15 Score=155.22 Aligned_cols=121 Identities=12% Similarity=0.166 Sum_probs=112.7
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~ 814 (1152)
.++++++|+|+++++++++.+...++.+.+++|++|+++|++++++|+|.+|.|+++..+ .....+++|++||+.
T Consensus 26 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-----~~~~~~~~G~~fG~~ 100 (160)
T 4f8a_A 26 RKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDD-----EVVAILGKGDVFGDV 100 (160)
T ss_dssp HHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEETT-----EEEEEEETTCEEECC
T ss_pred HHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEECC-----EEEEEecCCCEeCcH
Confidence 578999999999999999999999999999999999999999999999999999998722 456789999999999
Q ss_pred hhhcC--CCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHH
Q 001116 815 EVLIG--KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQS 860 (1152)
Q Consensus 815 ~lL~~--~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~l 860 (1152)
+++.+ .++.++++|.++|+++.|++++|.++++++|.+...+++.+
T Consensus 101 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 101 FWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp TTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred HHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 79999999999999999999999999999999988877664
No 26
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.62 E-value=1.2e-15 Score=165.03 Aligned_cols=144 Identities=15% Similarity=0.222 Sum_probs=124.5
Q ss_pred cCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcC
Q 001116 740 AHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIG 819 (1152)
Q Consensus 740 ~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~ 819 (1152)
++|+|+++++++++.+.+.++.+.+++|++|+++||+++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~ 93 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAE 93 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHT
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCC
Confidence 57999999999999999999999999999999999999999999999999998887788888889999999999999999
Q ss_pred CCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHH
Q 001116 820 KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALI 885 (1152)
Q Consensus 820 ~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll 885 (1152)
.|+.++++|.++|+++.|++++|.+++.++|.+...+++.++.++.... +....+...+.+.++
T Consensus 94 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rl 157 (232)
T 2gau_A 94 ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAE--RRTVTLTQKHVRGRL 157 (232)
T ss_dssp SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHHSCHHHHH
T ss_pred CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999988887642 223334444444444
No 27
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.61 E-value=5.9e-15 Score=156.74 Aligned_cols=142 Identities=17% Similarity=0.102 Sum_probs=123.1
Q ss_pred CCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCC-
Q 001116 742 PLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK- 820 (1152)
Q Consensus 742 plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~- 820 (1152)
++++.+++++++.+.+.++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 5677899999999999999999999999999999999999999999999999888998889999999999999999988
Q ss_pred CceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHH
Q 001116 821 PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALI 885 (1152)
Q Consensus 821 ~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll 885 (1152)
++.++++|.++|+++.|++++|.+++.++|.+...+++.++.++.... +....+...+.+.++
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~Rl 144 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTS--EKVGNLAFLDVTGRI 144 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH--HHHHHHHHSCHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHH--HHHHHHhhCCHHHHH
Confidence 899999999999999999999999999999999999999888887642 233344444455555
No 28
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.61 E-value=3.5e-15 Score=170.72 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=122.1
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~ 814 (1152)
.++|+++|+|+++++++++.+...++.+.+++|++|+++||+++++|+|.+|.|+++..+.+|++ ++..+++|++|||.
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~ 90 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEI 90 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHH
Confidence 58999999999999999999999999999999999999999999999999999999999888876 67899999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 001116 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS 865 (1152)
Q Consensus 815 ~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la 865 (1152)
+++.+.|+.++++|.++|+++.|++++|++++ ++|.+...+++.+..++.
T Consensus 91 ~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 91 ALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp HHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999988887766655
No 29
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.61 E-value=1.3e-15 Score=154.27 Aligned_cols=119 Identities=16% Similarity=0.262 Sum_probs=108.1
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
..++++++|+|.++++++++.+...++.+.+.+|++|+++|++++++|+|.+|.|+++. +|+ .+..+++|++||+
T Consensus 36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~--~~~~~~~G~~fGe 110 (154)
T 3pna_A 36 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE--WATSVGEGGSFGE 110 (154)
T ss_dssp HHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTE--EEEEECTTCEECC
T ss_pred HHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCE--EEEEecCCCEeee
Confidence 35689999999999999999999999999999999999999999999999999999997 232 4568999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHH
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLW 857 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~ 857 (1152)
.+++.+.++.++++|.++|+++.|++++|.+++.++|.++..+|
T Consensus 111 ~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~~ 154 (154)
T 3pna_A 111 LALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 154 (154)
T ss_dssp HHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC----
T ss_pred hHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhcC
Confidence 99999999999999999999999999999999999999887664
No 30
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.59 E-value=3.2e-15 Score=168.24 Aligned_cols=133 Identities=15% Similarity=0.254 Sum_probs=125.9
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEe-CCCcEEEEeEeCCCCccch
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKS-IRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~-~~g~~~i~~~l~~G~~fGE 813 (1152)
.++++++|+|..++++++..+...++.+.+.+|++|+++||.++++|+|.+|.|+++... .+|+...+..+++|++|||
T Consensus 156 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe 235 (299)
T 3shr_A 156 MEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGE 235 (299)
T ss_dssp HHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECG
T ss_pred HHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeCh
Confidence 467888999999999999999999999999999999999999999999999999999887 5777777889999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRI 867 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~ 867 (1152)
.+++.+.|+.++++|.++|+++.|++++|.+++.++|.+..++++.++.++...
T Consensus 236 ~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~ 289 (299)
T 3shr_A 236 KALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYE 289 (299)
T ss_dssp GGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999999999999999999999999999999999999888864
No 31
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.59 E-value=6.6e-15 Score=157.90 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=127.1
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~ 814 (1152)
+.+++++|+|.++++++++.+...++.+.+++|++|+++||+++++|+|.+|.|+++ .+.+|++.++..+++|++||+
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~- 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT- 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES-
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC-
Confidence 467899999999999999999999999999999999999999999999999999995 677888888899999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 815 ~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
++.++++|.++|+++.|++++|.+++.++|.+...+++.++.++.... +....+...+.+.+++
T Consensus 81 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~Rl~ 144 (220)
T 2fmy_A 81 ------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSL--TIINGLVFKDARLRLA 144 (220)
T ss_dssp ------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHHH
T ss_pred ------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCHHHHHH
Confidence 889999999999999999999999999999999999999988887642 3344556666666664
No 32
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.59 E-value=1.3e-14 Score=153.81 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=120.4
Q ss_pred CCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCC----Cc
Q 001116 747 LPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK----PY 822 (1152)
Q Consensus 747 Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~----~r 822 (1152)
|++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+. |+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 57899999999999999999999999999999999999999999999988988889999999999999999988 89
Q ss_pred eeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHH
Q 001116 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALI 885 (1152)
Q Consensus 823 ~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll 885 (1152)
.++++|.++|+++.|++++|.++++++|.+...+++.++.++.... +....+...+.+.++
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~--~~~~~l~~~~~~~Rl 141 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTT--RKVGDLAFLDVTGRV 141 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCHHHHH
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999888887642 233344444455555
No 33
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.58 E-value=1e-14 Score=174.87 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=110.9
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCc--EEEEeEeCCCCcc
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNK--HSLHPVFTHGSNL 811 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~--~~i~~~l~~G~~f 811 (1152)
..++++++|+|+++++++++.+...++.+.|.+|++|+++||+++++|+|.+|.|+++..+.+|+ ..++..+++|++|
T Consensus 40 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~f 119 (469)
T 1o7f_A 40 IFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAF 119 (469)
T ss_dssp HHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEE
T ss_pred HHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCc
Confidence 35679999999999999999999999999999999999999999999999999999999887774 3677899999999
Q ss_pred chhhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHH
Q 001116 812 GLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVE 853 (1152)
Q Consensus 812 GE~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~ 853 (1152)
||.+ +.+.|+.++++|.++|+++.|++++|.+++.++|.+.
T Consensus 120 Ge~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~ 160 (469)
T 1o7f_A 120 GESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (469)
T ss_dssp CGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGT
T ss_pred chhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHH
Confidence 9999 9999999999999999999999999999998888644
No 34
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.58 E-value=1.5e-14 Score=159.80 Aligned_cols=141 Identities=16% Similarity=0.087 Sum_probs=121.2
Q ss_pred CCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCC-C
Q 001116 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK-P 821 (1152)
Q Consensus 743 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~-~ 821 (1152)
+...+++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+. +
T Consensus 53 ~~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~ 132 (260)
T 3kcc_A 53 LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQE 132 (260)
T ss_dssp ------CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCB
T ss_pred HcCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCC
Confidence 336699999999999999999999999999999999999999999999999888998889999999999999999988 8
Q ss_pred ceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHH
Q 001116 822 YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALI 885 (1152)
Q Consensus 822 r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll 885 (1152)
+.++++|.++|+++.|++++|.+++.++|.+...+.+.++.++.... +....+...+.+.++
T Consensus 133 ~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~--~~~~~l~~~~~~~Rl 194 (260)
T 3kcc_A 133 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTS--EKVGNLAFLLVTGRI 194 (260)
T ss_dssp CCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH--HHHHHHHHCCHHHHH
T ss_pred CceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999888887642 233344444455555
No 35
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.58 E-value=1.5e-14 Score=154.60 Aligned_cols=126 Identities=11% Similarity=0.046 Sum_probs=112.2
Q ss_pred CCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCC
Q 001116 741 HPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK 820 (1152)
Q Consensus 741 ~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~ 820 (1152)
-|.|+..++++.+.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~ 83 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE 83 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence 47788899999999999999999999999999999999999999999999999888998889999999999999999876
Q ss_pred -CceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 821 -PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 821 -~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
++.++++|.++|+++.|++++|.+++.++|.+...+++.++.++..
T Consensus 84 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~ 130 (213)
T 1o5l_A 84 PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRV 130 (213)
T ss_dssp CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888775
No 36
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.56 E-value=4.7e-16 Score=153.68 Aligned_cols=120 Identities=14% Similarity=0.101 Sum_probs=107.0
Q ss_pred hhhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEe--EeCCCCcc
Q 001116 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHP--VFTHGSNL 811 (1152)
Q Consensus 734 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~--~l~~G~~f 811 (1152)
..++++++|+|.++++++++.+...++.+.+++|++|+++||+++++|+|.+|.|++. .+.+|++.++. .+++|++|
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~f 82 (137)
T 1wgp_A 4 GSSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFC 82 (137)
T ss_dssp CSCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBS
T ss_pred hHHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEe
Confidence 3467899999999999999999999999999999999999999999999999999965 55566655555 89999999
Q ss_pred chhhh---hcCCC------ceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHH
Q 001116 812 GLYEV---LIGKP------YMSDMVTDSVVLCFFIESDKILSILRSDPAVED 854 (1152)
Q Consensus 812 GE~~l---L~~~~------r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~ 854 (1152)
||.++ +.+.+ +.++++|.++|+++.|++++|.++++++|.++.
T Consensus 83 Ge~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 83 GDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp STHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred cHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 99985 78774 578999999999999999999999999987654
No 37
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.55 E-value=1.7e-14 Score=155.12 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=124.8
Q ss_pred HHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhh
Q 001116 737 LISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEV 816 (1152)
Q Consensus 737 lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~l 816 (1152)
+++++|+|+++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++ .+.+|++.++..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG---- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC---- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec----
Confidence 4678999999999999999999999999999999999999999999999999997 67778888889999999999
Q ss_pred hcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 817 LIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 817 L~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
.++.++++|.++|+++.|++++|.+++.++|.+...+++.++.++.... +....+...+.+.+++
T Consensus 76 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rl~ 140 (222)
T 1ft9_A 76 ---MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCM--RTIEDLMFHDIKQRIA 140 (222)
T ss_dssp ---SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHHH
T ss_pred ---CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHH
Confidence 7889999999999999999999999999999999999999998887642 3344556666666664
No 38
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.53 E-value=6.7e-14 Score=153.28 Aligned_cols=143 Identities=8% Similarity=-0.019 Sum_probs=125.1
Q ss_pred HhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhh
Q 001116 738 ISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL 817 (1152)
Q Consensus 738 L~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL 817 (1152)
+.+...+..+++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+ ++
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l 88 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LY 88 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CS
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ec
Confidence 3444444899999999999999999999999999999999999999999999999999999988999999999999 77
Q ss_pred cCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHH
Q 001116 818 IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALI 885 (1152)
Q Consensus 818 ~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll 885 (1152)
.+. +.++++|.++|+++.|++++|.+++.++|.+...+++.++.++.... +....+...+.+.++
T Consensus 89 ~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~--~~~~~~~~~~~~~Rl 153 (250)
T 3e6c_C 89 PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYA--RQVAEMNTYNPTIRI 153 (250)
T ss_dssp CCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH--HHHHHHTTSCHHHHH
T ss_pred CCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHH
Confidence 888 99999999999999999999999999999999999999998888642 233344444445545
No 39
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.51 E-value=1.5e-13 Score=153.74 Aligned_cols=126 Identities=13% Similarity=0.180 Sum_probs=115.1
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCC-cEEEEeEeCCCCccch
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRN-KHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g-~~~i~~~l~~G~~fGE 813 (1152)
..+++++++|..++++++..+...++.+.+.+|++|+++|++++++|+|.+|.|+++....+| +...+..+++|++|||
T Consensus 156 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe 235 (291)
T 2qcs_B 156 EEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGE 235 (291)
T ss_dssp HHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECS
T ss_pred HHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecH
Confidence 357888999999999999999999999999999999999999999999999999999876544 5567789999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHH
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQS 860 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~l 860 (1152)
.+++.+.||.++++|.++|+++.|++++|.+++.++|.+..++.+..
T Consensus 236 ~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 236 IALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp GGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred HHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876655543
No 40
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.48 E-value=6.1e-14 Score=152.43 Aligned_cols=116 Identities=19% Similarity=0.245 Sum_probs=108.1
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchh
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 814 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~ 814 (1152)
..+++++|+|..+++++++.+...++.+.+.+|++|+++|++++++|+|.+|.|+++..+.+ .+..+++|++|||.
T Consensus 124 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~----~~~~l~~g~~fGe~ 199 (246)
T 3of1_A 124 DDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG----VINKLKDHDYFGEV 199 (246)
T ss_dssp HHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE----EEEEEETTCEECHH
T ss_pred HHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc----eEEEcCCCCcccHH
Confidence 46789999999999999999999999999999999999999999999999999999876532 46789999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHH
Q 001116 815 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVED 854 (1152)
Q Consensus 815 ~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~ 854 (1152)
+++.+.||.++++|.++|+++.|++++|.+++..+|++..
T Consensus 200 ~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 200 ALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp HHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred HHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 9999999999999999999999999999999999887754
No 41
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.48 E-value=3.3e-14 Score=140.17 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=102.5
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEc-CCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKL-SGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~-~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
.++++++|+|..+++++++.+...++.+.+. +|++|+++|+.++++|+|.+|.|+++. .+|+. ..+++|++||+
T Consensus 15 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~---~~l~~G~~fG~ 89 (134)
T 2d93_A 15 LEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV---ENLFMGNSFGI 89 (134)
T ss_dssp HHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE---EEECTTCEESC
T ss_pred HHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE---EEecCCCccCh
Confidence 4689999999999999999999999999999 999999999999999999999999985 44544 45889999999
Q ss_pred hhhhcCCCceeEE-EEcceEEEEEEeHHHHHHHHhhCH
Q 001116 814 YEVLIGKPYMSDM-VTDSVVLCFFIESDKILSILRSDP 850 (1152)
Q Consensus 814 ~~lL~~~~r~atv-~A~t~~~l~~I~~~~f~~ll~~~p 850 (1152)
.+++.+.++.+++ +|.++|+++.|++++|.+++++++
T Consensus 90 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 90 TPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp CSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred hHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999997765
No 42
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.47 E-value=8.2e-14 Score=164.57 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=111.4
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCC------CcEEEEeEeCCC
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIR------NKHSLHPVFTHG 808 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~------g~~~i~~~l~~G 808 (1152)
..+++++++|..++++++..+...++.+.|.+|++|+++|+.++++|||.+|.|+++....+ |+...+..+++|
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G 345 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRG 345 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTT
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCC
Confidence 46789999999999999999999999999999999999999999999999999999977654 666778899999
Q ss_pred CccchhhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 809 SNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 809 ~~fGE~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
++|||.+++.+.||.++|+|.++|+++.|++++|.+++..+|.+..+..+.+..++.+
T Consensus 346 ~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~~ 403 (416)
T 3tnp_B 346 QYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVA 403 (416)
T ss_dssp CEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC----------
T ss_pred CEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877777777665
No 43
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.46 E-value=3e-13 Score=177.03 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=107.0
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeC--CCcEEEEeEeCCCCccc
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSI--RNKHSLHPVFTHGSNLG 812 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~--~g~~~i~~~l~~G~~fG 812 (1152)
...|+++++|+++++.++..|+.+++...+.+|++||++||.++++|+|.+|.|.|+.... +++...+..+++|+.||
T Consensus 41 ~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFG 120 (999)
T 4f7z_A 41 FTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFG 120 (999)
T ss_dssp HHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEEC
T ss_pred HHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcchh
Confidence 4568899999999999999999999999999999999999999999999999999998653 34456678999999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHH
Q 001116 813 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAV 852 (1152)
Q Consensus 813 E~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l 852 (1152)
| +++.+.||++||+|.++|++|.|++++|+.++.++|+.
T Consensus 121 E-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~ 159 (999)
T 4f7z_A 121 E-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQY 159 (999)
T ss_dssp G-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHH
T ss_pred h-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHH
Confidence 9 89999999999999999999999999999999877654
No 44
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=160.12 Aligned_cols=129 Identities=12% Similarity=0.172 Sum_probs=116.7
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCC-cEEEEeEeCCCCccch
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRN-KHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g-~~~i~~~l~~G~~fGE 813 (1152)
..+++++++|..++++++..+...++.+.|.+|++|+++|+.++++|+|.+|.|+++....+| +...+..+++|++|||
T Consensus 247 ~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe 326 (381)
T 4din_B 247 EEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGE 326 (381)
T ss_dssp HHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECT
T ss_pred HHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEech
Confidence 367899999999999999999999999999999999999999999999999999999876544 3455779999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHH
Q 001116 814 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIA 863 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~ 863 (1152)
.+++.+.||.++++|.++|+++.|++++|.+++..+|++..+..+.....
T Consensus 327 ~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~ 376 (381)
T 4din_B 327 IALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSF 376 (381)
T ss_dssp TGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHH
T ss_pred HHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877666554443
No 45
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.44 E-value=8.2e-13 Score=144.12 Aligned_cols=119 Identities=12% Similarity=0.162 Sum_probs=111.2
Q ss_pred ccchhHhhccce---EEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCC--ce
Q 001116 749 PSVREPLELSTK---EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKP--YM 823 (1152)
Q Consensus 749 ~e~l~~L~~~~~---~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~--r~ 823 (1152)
++.++.|..... .+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.+ +.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 677888888888 9999999999999999999999999999999999999998899999999999999999887 55
Q ss_pred eEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 001116 824 SDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRI 867 (1152)
Q Consensus 824 atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~ 867 (1152)
++++|.++|+++.|++++|.+++.++|.+...+++.++.++...
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~ 153 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQT 153 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999888887753
No 46
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.44 E-value=6.5e-13 Score=144.38 Aligned_cols=139 Identities=10% Similarity=0.060 Sum_probs=117.6
Q ss_pred CCCCccchhHhhc--cceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCc
Q 001116 745 RELPPSVREPLEL--STKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (1152)
Q Consensus 745 ~~Ls~e~l~~L~~--~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r 822 (1152)
+++++++++.++. .++.+.|++|++|+++||+++++|+|.+|.|+++..+.+|++.++..+ +|++||+.+++.+.++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 4688899998885 589999999999999999999999999999999999988988888888 9999999999998864
Q ss_pred --eeEEEEc-ceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 823 --MSDMVTD-SVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 823 --~atv~A~-t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
.+++.|. ++|+++.|++++|.+++.++|.+...+++.++.++.... +....+...+.+.+++
T Consensus 81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~Rla 145 (238)
T 2bgc_A 81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSL--AKFNDFSINGKLGSIC 145 (238)
T ss_dssp SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHTTHHHHHHH
T ss_pred CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHccCHHHHHH
Confidence 6677777 599999999999999999999999999999988887642 3333455555555553
No 47
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.34 E-value=7.7e-12 Score=143.41 Aligned_cols=272 Identities=13% Similarity=0.162 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCHHHH----HHhhh--hHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccC
Q 001116 99 DLLLAVFLPALLFESSFAMEVHQI----KRCLV--QMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATD 172 (1152)
Q Consensus 99 ~l~~~ifLp~LLF~~gl~~d~~~l----k~~~~--~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TD 172 (1152)
+++-..++.+++|..|+|+|.+.+ ++..+ .....|+.|++++.++ ++.+ ++....+.--+++..+||
T Consensus 61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~--~~~~~~~~~gw~ip~ATd 133 (388)
T 1zcd_A 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF--NYADPITREGWAIPAATD 133 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG--CCSSTTHHHHTSSSSCCC
T ss_pred HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH--hcCChhhhhhhHHHHHHH
Confidence 567778888999999999998877 44333 3577888898888766 2333 455555778889999999
Q ss_pred HHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001116 173 PVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLW 250 (1152)
Q Consensus 173 pvaV~ailkelg--~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~ 250 (1152)
-+.++.++..+| .|..++..+.+-+.+||..++++..++++ +..++..... . ++.+.+ .++
T Consensus 134 IAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt----~~~~~~~l~~---------~-~~~~~~---~~~ 196 (388)
T 1zcd_A 134 IAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT----NDLSMASLGV---------A-AVAIAV---LAV 196 (388)
T ss_dssp HHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC----CCCCHHHHHH---------H-HHHHHH---HHH
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc----CCccHHHHHH---------H-HHHHHH---HHH
Confidence 999999999887 78999999999999999999999988854 3344332210 0 111111 122
Q ss_pred HHHH-hcchhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHH-HH
Q 001116 251 LGFI-FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI-FI 328 (1152)
Q Consensus 251 l~~~-~~d~~~~i~ltl~~~y~~y~iaee~lg~SGvlavvvaGl~l~~~~~~~~~~~~~~~l~~fw~~i~~l~~~li-Fi 328 (1152)
+++. .++..... .+ ..++++.+ +..|++.++|.|++|+++....+... +..++..+.+-....+++.|+| |+
T Consensus 197 l~r~~v~~~~~y~--~l--gl~~w~~~-~~sGvHatigg~l~Gl~ip~~~~~~~-~~~~~le~~l~p~v~~~ilPlFaFa 270 (388)
T 1zcd_A 197 LNLCGARRTGVYI--LV--GVVLWTAV-LKSGVHATLAGVIVGFFIPLKEKHGR-SPAKRLEHVLHPWVAYLILPLFAFA 270 (388)
T ss_dssp HHHTTCCCTHHHH--HH--HHHHHHHT-TTSHHHHHHHHHHHHHHSCCCGGGSS-CHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHhcchhHHHHH--HH--HHHHHHHH-HHhCccHHHHHHHHHHhccCCCccCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 22222222 22 23445566 78999999999999999975322111 2234444445555567999999 99
Q ss_pred HhhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCChhHHHHHhh-hchhhHHH
Q 001116 329 LSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVW-SGLRGAVA 402 (1152)
Q Consensus 329 l~Gl~i~~~~l~~~~~~~~~~~~~~~~l~l~~~~~v~R~l~v~~~~p~l~~~~-----~~~~~~e~~vl~w-~GlRGavs 402 (1152)
..|+.++...... ..+ ...+.+.+.++++|+++++....+..+++ .+.+|++..-+++ +|.+|.++
T Consensus 271 naGv~l~~~~~~~-------l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftms 342 (388)
T 1zcd_A 271 NAGVSLQGVTLDG-------LTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMS 342 (388)
T ss_dssp HCCCCCSSSCCCT-------HHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHH
T ss_pred hcCeeecccchhh-------ccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHH
Confidence 9999986422110 001 11234455668999998766555544443 3889999998888 79999999
Q ss_pred HHHHhh
Q 001116 403 LSLSLS 408 (1152)
Q Consensus 403 lalAl~ 408 (1152)
+..+..
T Consensus 343 L~Ia~l 348 (388)
T 1zcd_A 343 IFIASL 348 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 48
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.32 E-value=1.2e-13 Score=159.69 Aligned_cols=124 Identities=16% Similarity=0.288 Sum_probs=0.5
Q ss_pred hHHhcCCCCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhh
Q 001116 736 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYE 815 (1152)
Q Consensus 736 ~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~ 815 (1152)
+.++++|+|+++++++++.+...++.+.+++||+|++|||+++++|+|.+|.|+++..+ ...+++|++|||.+
T Consensus 228 ~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~G~~fGe~~ 300 (355)
T 3beh_A 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGEMA 300 (355)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-------eeEECCCCEEeehH
Confidence 56888999999999999999999999999999999999999999999999999998765 14789999999999
Q ss_pred hhcCCCceeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 001116 816 VLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866 (1152)
Q Consensus 816 lL~~~~r~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~ 866 (1152)
++.+.|+.++++|.++|+++.+++++|+++++++|++...+.+.+..++.+
T Consensus 301 ~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~ 351 (355)
T 3beh_A 301 LISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGA 351 (355)
T ss_dssp ---------------------------------------------------
T ss_pred HhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988887777664
No 49
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.30 E-value=3e-12 Score=153.37 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=105.5
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceE-EEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKE-IMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~-~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
.++++++|+|.++++++++.++..+.. +.|++|++|+++||.++++|+|.+|.|+++..+ + ..+..+++|++|||
T Consensus 336 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~---~-~~~~~l~~G~~fGe 411 (469)
T 1o7f_A 336 YDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG---K-GVVCTLHEGDDFGK 411 (469)
T ss_dssp HHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETT---T-EEEEEEETTCEECG
T ss_pred HHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcC---C-eeEEEecCCCEEEE
Confidence 467899999999999999999999985 589999999999999999999999999998743 2 25678999999999
Q ss_pred hhhhcCCCceeEEEEcc-eEEEEEEeHHHHHHHHhhCHHHHHHHHHH
Q 001116 814 YEVLIGKPYMSDMVTDS-VVLCFFIESDKILSILRSDPAVEDFLWQQ 859 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t-~~~l~~I~~~~f~~ll~~~p~l~~~i~~~ 859 (1152)
.+++.+.|+.++++|.+ +|+++.|++++|.+++.++|.+..++.+.
T Consensus 412 ~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~ 458 (469)
T 1o7f_A 412 LALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH 458 (469)
T ss_dssp GGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred ehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence 99999999999999998 79999999999999999999988766543
No 50
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.29 E-value=8.7e-12 Score=131.04 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=101.3
Q ss_pred EEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEEEeHHH
Q 001116 762 IMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDK 841 (1152)
Q Consensus 762 ~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~l~~I~~~~ 841 (1152)
+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||| +++.+.|+.++++|.++|+++.||+++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 5789999999999999999999999999999988898888899999999999 999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 842 ILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 842 f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
|. |.+...+++.++.++.... +....+...+.+.+++
T Consensus 81 ~~------p~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rl~ 117 (195)
T 3b02_A 81 MD------HEALHRVARNLARQMRRVQ--AYEAHLQTGELRARIA 117 (195)
T ss_dssp CC------HHHHHHHHHHHHHHHHHHH--HHHHHHTSSCHHHHHH
T ss_pred cC------HHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHH
Confidence 98 9999999998888887642 3333445555555553
No 51
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.17 E-value=4.1e-11 Score=126.51 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=100.3
Q ss_pred hccceEEEEcCCceEEcCCCCC--CeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEE
Q 001116 756 ELSTKEIMKLSGVTLYREGSKP--SGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVL 833 (1152)
Q Consensus 756 ~~~~~~~~~~~Ge~I~~eGe~~--~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~ 833 (1152)
...++.+.+++|++|+++||++ +++|+|.+|.|+++..+.+|++.++..+++|++||+ +++.+.++.++++|.++|+
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~ 80 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVR 80 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEE
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEE
Confidence 4567788999999999999999 999999999999999998899888999999999999 9999999999999999999
Q ss_pred EEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHH
Q 001116 834 CFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA 886 (1152)
Q Consensus 834 l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~ 886 (1152)
++.| +++|. |.+...+++.++.++.... +....+...+.+.+++
T Consensus 81 v~~i-~~~~~------p~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~Rl~ 124 (202)
T 2zcw_A 81 LEPL-PENPD------PELLKDLAQHLSQGLAEAY--RRIERLATQRLKNRMA 124 (202)
T ss_dssp EEEC-CSSCC------HHHHHHHHHHHHHHHHHHH--HHHHHHHHCCHHHHHH
T ss_pred EEEE-hHhcC------HHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHH
Confidence 9999 98886 8898888888888777532 2333444444555553
No 52
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.15 E-value=5.6e-11 Score=148.42 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=106.3
Q ss_pred hhHHhcCCCCCCCCccchhHhhccce-EEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTK-EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~-~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
.++++++|+|.++++++++.+...+. .+.+++|++|+++||.++++|+|.+|.|+++..+ + .++..+++|++|||
T Consensus 31 ~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g---~-~il~~l~~Gd~fGe 106 (694)
T 3cf6_E 31 YDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG---K-GVVCTLHEGDDFGK 106 (694)
T ss_dssp HHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT---T-EEEEEEETTCEECH
T ss_pred HHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC---C-EEEEEeCCCCEeeh
Confidence 46789999999999999999999998 7899999999999999999999999999998752 2 45789999999999
Q ss_pred hhhhcCCCceeEEEEcc-eEEEEEEeHHHHHHHHhhCHHHH
Q 001116 814 YEVLIGKPYMSDMVTDS-VVLCFFIESDKILSILRSDPAVE 853 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t-~~~l~~I~~~~f~~ll~~~p~l~ 853 (1152)
.+++.+.++.++++|.+ +|+++.|++++|.+++.++|.+.
T Consensus 107 ~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~ 147 (694)
T 3cf6_E 107 LALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANT 147 (694)
T ss_dssp HHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCC
T ss_pred HHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHH
Confidence 99999999999999999 59999999999999999998773
No 53
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.11 E-value=1.5e-10 Score=151.54 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=97.5
Q ss_pred hhHHhcCCCCCCCCccchhHhhccceEEE-EcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccch
Q 001116 735 SDLISAHPLLRELPPSVREPLELSTKEIM-KLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 813 (1152)
Q Consensus 735 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~-~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE 813 (1152)
.+.+.++|.|.+++...+..|+..+.... +++|++|++|||.++.+|||.+|.|+|+... + ..+..+++||+|||
T Consensus 336 ~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~---~-~~v~~L~~Gd~FGE 411 (999)
T 4f7z_A 336 YDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG---K-GVVCTLHEGDDFGK 411 (999)
T ss_dssp HHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETT---T-EEEEEEETTCEECG
T ss_pred HHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcC---C-cceEEecCCCcccc
Confidence 35788999999999999999999998655 4689999999999999999999999998632 2 23568999999999
Q ss_pred hhhhcCCCceeEEEEcce-EEEEEEeHHHHHHHHh
Q 001116 814 YEVLIGKPYMSDMVTDSV-VLCFFIESDKILSILR 847 (1152)
Q Consensus 814 ~~lL~~~~r~atv~A~t~-~~l~~I~~~~f~~ll~ 847 (1152)
.+++++.||.+||+|.++ |+++.|++++|.+++.
T Consensus 412 lALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~ 446 (999)
T 4f7z_A 412 LALVNDAPRAASIVLREDNCHFLRVDKEDGNRILR 446 (999)
T ss_dssp GGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHH
T ss_pred hhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHh
Confidence 999999999999999885 9999999999999884
No 54
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=98.14 E-value=1.8e-07 Score=67.84 Aligned_cols=31 Identities=45% Similarity=0.715 Sum_probs=28.3
Q ss_pred cHHHHHHhhhhccccCHHHHHHHHhhcCCCh
Q 001116 157 SWKTSLLLGGLLSATDPVAVVALLKELGASK 187 (1152)
Q Consensus 157 ~~~~alllGails~TDpvaV~ailkelg~~~ 187 (1152)
+|..||+|||++|+|||++|.+++|++++|+
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence 4567899999999999999999999999885
No 55
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=97.48 E-value=3.3e-06 Score=58.20 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=23.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHH
Q 001116 184 GASKKLNTIIEGESLMNDGTAIVVYQ 209 (1152)
Q Consensus 184 g~~~~l~~ll~gESLlND~~aivlf~ 209 (1152)
++|+++..+++|||++||++++|+|.
T Consensus 1 ~V~~~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 1 HINELLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp CCSSTTHHHHTTTTTTTTTTTTTTTT
T ss_pred CCCceEEEEEEeeeeecccEEEEEEe
Confidence 36899999999999999999999985
No 56
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=96.65 E-value=1.8e-05 Score=57.60 Aligned_cols=30 Identities=27% Similarity=0.528 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHhhh
Q 001116 268 VSYIAFFTAQEGADVSGVLTVMTLGMFYAAV 298 (1152)
Q Consensus 268 ~~y~~y~iaee~lg~SGvlavvvaGl~l~~~ 298 (1152)
++|++|++| |.+|+|||+|++++|++++++
T Consensus 2 ~~y~~Yl~A-E~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 2 KSYMAYLSA-ELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp CCSTTTGGG-SSSTTTTTTTTTTTTSCCCCC
T ss_pred hhHHHHHHH-HHhCcChHHHHHHHHHHHhhc
Confidence 578899999 789999999999999998653
No 57
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=96.36 E-value=0.0013 Score=45.55 Aligned_cols=25 Identities=40% Similarity=0.792 Sum_probs=22.1
Q ss_pred hHHHHHhhhchhhHHHHHHHhhhhc
Q 001116 387 KEAIILVWSGLRGAVALSLSLSVKR 411 (1152)
Q Consensus 387 ~e~~vl~w~GlRGavslalAl~v~~ 411 (1152)
+++.+++|+|+||+|++++++..|.
T Consensus 2 ~~Q~i~~~~GLRGAvafaL~~~l~~ 26 (28)
T 2kbv_A 2 KDQFIIAYGGLRGAIAFSLGYLLDK 26 (28)
T ss_dssp CHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CceeEEEeecchHHHHHHHHHhccC
Confidence 4788999999999999999998764
No 58
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=93.89 E-value=10 Score=42.51 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHH
Q 001116 102 LAVFLPALLFESSFAMEVHQIKRCLV---QMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVA 178 (1152)
Q Consensus 102 ~~ifLp~LLF~~gl~~d~~~lk~~~~---~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~a 178 (1152)
....++.++|..|.+++++++++.++ ..+...+...++.- ++++.+..+++.+-....++++-+++-++..+.+.+
T Consensus 45 i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~P-ll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t 123 (332)
T 3zux_A 45 IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMP-ATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMT 123 (332)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHH-HHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHH-HHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHH
Confidence 34678889999999999999996544 33322222222222 223333334432223455555555555555554433
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 001116 179 LLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGK 218 (1152)
Q Consensus 179 ilkelg~~~~l~~ll~gESLlND~~aivlf~~~~~~~~~~ 218 (1152)
- ..|-+.. +...-..+|...++++.-+.+.+..+.
T Consensus 124 ~--~a~Gd~~---la~~~~~~stll~~~~~Pl~~~l~~g~ 158 (332)
T 3zux_A 124 Y--LARGNVA---LSVAVTSVSTLTSPLLTPAIFLMLAGE 158 (332)
T ss_dssp H--HTTCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred H--HhCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3 2333433 344455667777777766666655543
No 59
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=77.58 E-value=0.12 Score=35.53 Aligned_cols=23 Identities=13% Similarity=0.642 Sum_probs=20.4
Q ss_pred cChHHHHHHHHHHHHHHhhhcCC
Q 001116 96 IDPDLLLAVFLPALLFESSFAME 118 (1152)
Q Consensus 96 ~~p~l~~~ifLp~LLF~~gl~~d 118 (1152)
++|++|+...||+++|++|+.|.
T Consensus 2 ~~~~~FF~~LLPPII~~aGy~l~ 24 (27)
T 1y4e_A 2 LQSDVFFLFLLPPIILDAGYFLP 24 (27)
T ss_dssp CCSCSSHHHHSCCSSHHHHTTGG
T ss_pred CccceeeeeccCccEeecccccc
Confidence 46788999999999999999875
No 60
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=62.51 E-value=11 Score=36.72 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=41.0
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
.+|..++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+-..
T Consensus 44 ~~f~~l~~~~l~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~ 94 (161)
T 3idb_B 44 LLFKNLDPEQMSQVL-DAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV 94 (161)
T ss_dssp HHHHTSCHHHHHHHH-HHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE
T ss_pred HhhhcCCHHHHHHHH-HhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE
Confidence 578899999998877 4778889999999988886 89999999998653
No 61
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=60.77 E-value=10 Score=35.47 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=41.3
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeeccc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHGL 920 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~~ 920 (1152)
..|..++.++++.+. +......|.+|+.+..+++ .+++|++|.|+....
T Consensus 17 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 68 (138)
T 1vp6_A 17 PLFQKLGPAVLVEIV-RALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 68 (138)
T ss_dssp GGGGGCCHHHHHHHH-HHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSS
T ss_pred hhhhcCCHHHHHHHH-HhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeC
Confidence 567889999998877 4678889999999988876 899999999987653
No 62
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=59.56 E-value=20 Score=36.41 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 850 PAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 850 p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
+.++..+.......+-+.. .+|..++.+.++.+. .......|.+|+.+..+++ .+|+|++|.|+...
T Consensus 59 ~~L~~~i~~~~~~~~l~~~--~~f~~l~~~~l~~l~-~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~ 128 (202)
T 3bpz_A 59 GPLREKIVNFNCRKLVASM--PLFANADPNFVTAML-TKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 128 (202)
T ss_dssp HHHHHHHHHHHTHHHHHTC--HHHHTSCHHHHHHHH-HHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcC--CchhcCCHHHHHHHH-HhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE
Confidence 4455544443333322211 577889999888877 4677889999999988776 89999999998753
No 63
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=58.77 E-value=11 Score=35.50 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=41.1
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
.+|..++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+-..
T Consensus 12 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~ 62 (142)
T 3mdp_A 12 RFFASLTDEQLKDIA-LISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFY 62 (142)
T ss_dssp HHHHTSCHHHHHHHH-HTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEEC
T ss_pred chhccCCHHHHHHHH-HhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEE
Confidence 578899999998877 5788889999999988876 89999999998753
No 64
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=58.61 E-value=18 Score=36.50 Aligned_cols=67 Identities=6% Similarity=0.022 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 850 PAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 850 p~l~~~i~~~la~~la~~~~~~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
+.++..+.......+-+.. .+|..++.+.++.+. .......|.+|+.+..+++ .+++|++|.|+...
T Consensus 58 ~~Lr~~i~~~~~~~~l~~~--~~f~~l~~~~l~~l~-~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~ 127 (198)
T 2ptm_A 58 ESIRQDVANYNCRDLVASV--PFFVGADSNFVTRVV-TLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM 127 (198)
T ss_dssp HHHHHHHHHHHTHHHHHHC--GGGTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcC--cchhcCCHHHHHHHH-HhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe
Confidence 4555555444433333221 467788988888877 4678889999999988876 89999999998764
No 65
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=58.47 E-value=12 Score=36.12 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=40.8
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
.+|..++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+-..
T Consensus 33 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~ 83 (160)
T 4f8a_A 33 PAFRLASDGCLRALA-MEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ 83 (160)
T ss_dssp GGGTTCCHHHHHHHH-TTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE
T ss_pred HhhhhCCHHHHHHHH-HhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE
Confidence 467889999998877 5788889999999988886 89999999998754
No 66
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=57.60 E-value=8.8 Score=39.83 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=41.8
Q ss_pred HHHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 870 PQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 870 ~~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
..+|..++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+-..
T Consensus 15 ~~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~ 66 (232)
T 2gau_A 15 RDVWSLLNEEERELLD-KEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILR 66 (232)
T ss_dssp HHHHTTCCHHHHHHHH-HHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC
T ss_pred cHhhhcCCHHHHHHHH-hhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEE
Confidence 3678899999999887 4788889999999988876 88999999998763
No 67
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=56.07 E-value=12 Score=35.35 Aligned_cols=48 Identities=6% Similarity=0.116 Sum_probs=40.5
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
.+|..++.++++.+. .......|.+|+.+..+++ .+|+|++|.|+...
T Consensus 29 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~ 79 (139)
T 3ocp_A 29 DFMKNLELSQIQEIV-DCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK 79 (139)
T ss_dssp TTTTTSCHHHHHHHH-HHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE
T ss_pred HhhhcCCHHHHHHHH-HhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE
Confidence 467789999998877 4678889999999988876 89999999998754
No 68
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=54.29 E-value=14 Score=35.64 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=40.9
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
.+|..++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+...
T Consensus 44 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~ 94 (154)
T 3pna_A 44 VLFSHLDDNERSDIF-DAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV 94 (154)
T ss_dssp GGGTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE
T ss_pred hhhhhCCHHHHHHHH-HhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE
Confidence 467789999998887 4677889999999988876 89999999998765
No 69
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=52.54 E-value=11 Score=35.33 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=39.0
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
.+|..++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+..
T Consensus 12 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~ 61 (137)
T 1wgp_A 12 PLFENMDERLLDAIC-ERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV 61 (137)
T ss_dssp SGGGSCCHHHHHHHH-HHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE
T ss_pred cchhhCCHHHHHHHH-HHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE
Confidence 356788888888877 4688889999999988776 8999999999854
No 70
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=48.22 E-value=13 Score=35.38 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=40.2
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
..|..++.++++.+. +......|.+|+.+..+++ .+++|++|.|+-..
T Consensus 18 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~ 68 (154)
T 2z69_A 18 HLFEPLSPVQLQELL-ASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYR 68 (154)
T ss_dssp TTTTTSCHHHHHHHH-HTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEC
T ss_pred hhhcCCCHHHHHHHH-hhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEE
Confidence 456788999988877 4788889999999988776 89999999998753
No 71
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=43.34 E-value=19 Score=33.94 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=39.3
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
..|..++.++++.+. +......|.+|+.+..+++ .+++|++|.|+-.
T Consensus 11 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 60 (149)
T 2pqq_A 11 PLFAALDDEQSAELR-ASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLH 60 (149)
T ss_dssp TTTTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSEECEEEEEEESCEEEE
T ss_pred hhhhcCCHHHHHHHH-HhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEE
Confidence 356788888888877 4688889999999988876 7899999999865
No 72
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=42.64 E-value=27 Score=36.08 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=41.1
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
.+|..++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+-..
T Consensus 17 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~ 67 (237)
T 3fx3_A 17 LLIRSLPEQHVDALL-SQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFR 67 (237)
T ss_dssp HHHHTSCHHHHHHHH-TTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE
T ss_pred HhhccCCHHHHHHHH-hhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEE
Confidence 578899999998877 5788889999999988876 89999999998653
No 73
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=42.40 E-value=86 Score=28.26 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=39.5
Q ss_pred EEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhh-cCCCceeEEEEcceEEEEEE
Q 001116 763 MKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL-IGKPYMSDMVTDSVVLCFFI 837 (1152)
Q Consensus 763 ~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL-~~~~r~atv~A~t~~~l~~I 837 (1152)
.+.+|..+-........+++|++|.+++...+ +. ..+.+||++ ++ .+.+.. +.+.+++.++.+
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~---~~---~~l~~Gd~i----~i~~~~~H~--~~~~~~~~~~~i 107 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITFDD---QK---IDLVPEDVL----MVPAHKIHA--IAGKGRFKMLQI 107 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEETT---EE---EEECTTCEE----EECTTCCBE--EEEEEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEECC---EE---EEecCCCEE----EECCCCcEE--EEeCCCcEEEEE
Confidence 35577766545556678999999999987632 22 468899876 22 234443 444456665543
No 74
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=40.89 E-value=37 Score=34.70 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=40.5
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
.+|..++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+-..
T Consensus 15 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~ 65 (227)
T 3dkw_A 15 HLFEPLSPVQLQELL-ASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYR 65 (227)
T ss_dssp TTTSSSCHHHHHHHH-TSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCB
T ss_pred hhhcCCCHHHHHHHH-hhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEE
Confidence 467789999998877 5788889999999988876 89999999998754
No 75
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=40.88 E-value=13 Score=34.91 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=39.4
Q ss_pred HHHHhccHHHHHHHHHHhhhhcccc-CCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCL-RGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~-~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
..|..++.++++.+. .......|. +|+.+..+++ .+|+|++|.|+...
T Consensus 22 ~~f~~l~~~~~~~l~-~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~ 73 (134)
T 2d93_A 22 PAFANMTMSVRRELC-SVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH 73 (134)
T ss_dssp STTTSSCHHHHHHHT-TTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC
T ss_pred cchhhCCHHHHHHHH-HhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc
Confidence 456788988888877 467788999 9999888876 88999999998654
No 76
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=40.48 E-value=72 Score=33.24 Aligned_cols=68 Identities=10% Similarity=-0.016 Sum_probs=50.5
Q ss_pred ceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEEE
Q 001116 759 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (1152)
Q Consensus 759 ~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~l~~I 837 (1152)
+....+.+|+.+=..--+.+.+++|++|.+++...+ +. ..+++||++ ......+..+.|.+++.++.+
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~---~~---~~l~~Gd~~-----~~p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIEN---NK---KTISNGDFL-----EITANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESS---CE---EEEETTEEE-----EECSSCCEEEEESSSEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEECC---EE---EEECCCCEE-----EECCCCCEEEEECCCcEEEEE
Confidence 345567799999888888999999999999998643 22 367788775 222223456788899988877
No 77
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=40.11 E-value=47 Score=33.33 Aligned_cols=45 Identities=4% Similarity=0.037 Sum_probs=35.9
Q ss_pred HHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 873 FEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 873 ~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
.+.++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+-.
T Consensus 4 ~~~l~~~~l~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 51 (210)
T 3ryp_A 4 GKPQTDPTLEWFL-SHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVL 51 (210)
T ss_dssp ---CCCHHHHHHH-TTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEE
T ss_pred CCcCCHHHHHHHH-HhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEE
Confidence 3467888888877 5788889999999988876 8999999999875
No 78
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=39.10 E-value=22 Score=36.45 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=36.9
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
.+|..++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+-.
T Consensus 17 ~lf~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 66 (230)
T 3iwz_A 17 TPSLTLDAGTIERFL-AHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSII 66 (230)
T ss_dssp -----CCHHHHHHHH-TTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEE
T ss_pred chhccCCHHHHHHHH-HhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEE
Confidence 577899999999887 5788889999999988876 8999999999865
No 79
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=38.42 E-value=19 Score=36.19 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=40.1
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
.+|..++.++++.+. .......|.+|+.+..+++ .+|+|++|.|+-..
T Consensus 45 ~~f~~l~~~~l~~l~-~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~ 95 (187)
T 3gyd_A 45 KLFGDFSNEEVRYLC-SYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIK 95 (187)
T ss_dssp CSSCCCCHHHHHHHH-TTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEE
T ss_pred HhhhcCCHHHHHHHH-HhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEE
Confidence 456788989888876 5788889999999988886 89999999998653
No 80
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=38.08 E-value=21 Score=35.72 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=39.9
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
..|..++.+++..+. +......|.+|+.+..+++ .+|+|++|.|+-.
T Consensus 13 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~ 62 (194)
T 3dn7_A 13 RKFIFLTDEDAGTLS-AFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLF 62 (194)
T ss_dssp HTTSCCCHHHHHHHH-TTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEE
T ss_pred HHhCCCCHHHHHHHH-HhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEE
Confidence 356789999998877 5778889999999988886 8999999999865
No 81
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=37.77 E-value=12 Score=38.39 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=40.0
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
.+|..++.+.++.+. .......|.+|+.+..+++ .+|+|++|.|+...
T Consensus 81 ~~f~~l~~~~l~~l~-~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~ 131 (212)
T 3ukn_A 81 PLFESASRGCLRSLS-LIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK 131 (212)
T ss_dssp GGGTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES
T ss_pred HHhhcCCHHHHHHHH-HHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE
Confidence 456788888888877 4777889999999988876 89999999998765
No 82
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=37.25 E-value=94 Score=28.38 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=43.2
Q ss_pred ceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEE
Q 001116 759 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCF 835 (1152)
Q Consensus 759 ~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~l~ 835 (1152)
+....+.+|..+-..--+.+.+++|++|.+++...+ +. ..+.+||.+= + .......+.+.+++.++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~---~~---~~l~~Gd~i~----i-p~~~~H~~~~~~~~~~~ 103 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDG---AQ---RRLHQGDLLY----L-GAGAAHDVNAITNTSLL 103 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETT---EE---EEECTTEEEE----E-CTTCCEEEEESSSEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEECC---EE---EEECCCCEEE----E-CCCCcEEEEeCCCcEEE
Confidence 334556788888766666779999999999987633 22 4688988762 2 22233456666666543
No 83
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=35.58 E-value=23 Score=36.13 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=40.0
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
.+|..++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+-.
T Consensus 9 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~ 58 (220)
T 3dv8_A 9 PLWNDLNTAQKKLIS-DNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTY 58 (220)
T ss_dssp GGGGTSCHHHHHHHH-TTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEE
T ss_pred hhhhcCCHHHHHHHH-hhCceEEeCCCCEEECCCCCcceEEEEEeceEEEE
Confidence 467789999998877 5778889999999988876 8999999999865
No 84
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=34.18 E-value=2.2e+02 Score=26.30 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=31.7
Q ss_pred EEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCcc
Q 001116 761 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (1152)
Q Consensus 761 ~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~f 811 (1152)
...+.+|..+-.. ...+.+++|++|.+++.. +++. ..+++||++
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~---~g~~---~~l~~GD~v 87 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST---DGET---VTAGPGEIV 87 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE---TTEE---EEECTTCEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE---CCEE---EEECCCCEE
Confidence 3455677665444 377899999999999976 2332 468899986
No 85
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=34.02 E-value=24 Score=35.77 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=39.8
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
.+|..++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+-.
T Consensus 5 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 54 (216)
T 4ev0_A 5 PLFHGLAPEEVDLAL-SYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLF 54 (216)
T ss_dssp GGGTTCCHHHHHHHH-TTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEE
T ss_pred hhhcCCCHHHHHHHH-HhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEE
Confidence 467789999998877 5778889999999988876 8999999999875
No 86
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=31.46 E-value=36 Score=35.23 Aligned_cols=47 Identities=23% Similarity=0.378 Sum_probs=39.9
Q ss_pred HHHHhccHHHHHHHHHHh--hhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 871 QIFEKLTMQDMRALIAER--SKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~--~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
.+|..++.++++.+. +. .....|.+|+.+..+++ .+|+|++|.|+-.
T Consensus 24 ~lf~~l~~~~~~~l~-~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~ 75 (232)
T 1zyb_A 24 PLFQGLCHEDFTSIL-DKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIV 75 (232)
T ss_dssp GGGTTCCHHHHHHHH-HTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEE
T ss_pred ccccCCCHHHHHHHH-hhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEE
Confidence 467789999998877 45 78889999999988876 8899999999865
No 87
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=30.61 E-value=2e+02 Score=25.65 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=41.4
Q ss_pred eEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEEE
Q 001116 760 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (1152)
Q Consensus 760 ~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~l~~I 837 (1152)
....+.+|...-..--....+++|++|.+++... ++. ..+.+||++ +........+.+.+++.++.+
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~---~~~---~~l~~Gd~~-----~ip~~~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVD---GVI---KVLTAGDSF-----FVPPHVDHGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEET---TEE---EEECTTCEE-----EECTTCCEEEEESSCEEEEEE
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEEC---CEE---EEeCCCCEE-----EECcCCceeeEeCCCcEEEEE
Confidence 3455667776533333467899999999998762 222 468899885 222222344556667776655
No 88
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=29.69 E-value=1.8e+02 Score=25.97 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=40.6
Q ss_pred EEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEEE
Q 001116 761 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 837 (1152)
Q Consensus 761 ~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A~t~~~l~~I 837 (1152)
...+.+|..+-..--....+++|++|.+++... ++. ..+++|+++=. =.+.+ ..+.+.++++++.+
T Consensus 44 ~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~---~~~---~~l~~Gd~~~i---p~~~~--H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 44 VFSLDKGQEIGRHSSPGDAMVTILSGLAEITID---QET---YRVAEGQTIVM---PAGIP--HALYAVEAFQMLLV 109 (115)
T ss_dssp EEEECTTCEEEEECCSSEEEEEEEESEEEEEET---TEE---EEEETTCEEEE---CTTSC--EEEEESSCEEEEEE
T ss_pred EEEECCCCccCCEECCCcEEEEEEeCEEEEEEC---CEE---EEECCCCEEEE---CCCCC--EEEEECCCceEEEE
Confidence 445567877644444467899999999998753 222 46789987621 12333 34555666666554
No 89
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=27.81 E-value=53 Score=32.89 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 876 LTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 876 L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
|+.++++.+. +......|.+|+.+..+++ .+|+|++|.|+-.
T Consensus 1 l~~~~l~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 45 (207)
T 2oz6_A 1 MKLKHLDKLL-AHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTIL 45 (207)
T ss_dssp CCHHHHHHHH-HSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEE
T ss_pred CCHHHHHHHH-hhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEE
Confidence 3456666666 4788889999999988776 8899999999865
No 90
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=26.96 E-value=37 Score=41.98 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=52.3
Q ss_pred EEeHHHHHHHHhhCHHHHHHH-HHHHHHHHHHHhhHHHHHhccHHHHHHHHHHhhh-hccccCCcEEEecCc---EEEEE
Q 001116 836 FIESDKILSILRSDPAVEDFL-WQQSAIALSRILLPQIFEKLTMQDMRALIAERSK-MTTCLRGEIIEIPYH---CIGFL 910 (1152)
Q Consensus 836 ~I~~~~f~~ll~~~p~l~~~i-~~~la~~la~~~~~~~~e~L~~~dlr~ll~~~~~-l~~y~~g~~i~i~~~---~~~IL 910 (1152)
..|.+.++.++.+.|.-+... ...+...+.+. .+|..++.++++.+.. ... ...|.+|+.+..+++ .+|||
T Consensus 5 ~~p~~~~r~iL~k~p~~r~~~d~~~l~~~L~~~---~lF~~Ls~~~l~~L~~-~~~~~~~~~kGe~I~~eGd~~~~lyiI 80 (694)
T 3cf6_E 5 SFPDAHMRMILRKPPGQRTVDDLEIIYDELLHI---KALSHLSTTVKRELAG-VLIFESHAKGGTVLFNQGEEGTSWYII 80 (694)
T ss_dssp ------CHHHHHSCGGGCCHHHHHHHHHHHTTC---GGGTTSCHHHHHHHHT-TCEEEEECSTTCEEECTTSBCCEEEEE
T ss_pred cCcHHHHHHHHcCChhhCCHHHHHHHHHHHHcC---hhhccCCHHHHHHHHH-hcceEEEECCCCEEECCCCcCCeEEEE
Confidence 356677888887776554322 22233333332 5678899999988773 444 568999999988876 89999
Q ss_pred Eeeeeeeccc
Q 001116 911 LEGFIKTHGL 920 (1152)
Q Consensus 911 l~G~V~~~~~ 920 (1152)
++|.|+....
T Consensus 81 lsG~V~v~~~ 90 (694)
T 3cf6_E 81 LKGSVNVVIY 90 (694)
T ss_dssp EESEEEEEET
T ss_pred EEEEEEEEEe
Confidence 9999987643
No 91
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=25.71 E-value=1.1e+02 Score=32.27 Aligned_cols=43 Identities=5% Similarity=0.070 Sum_probs=33.7
Q ss_pred hccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 875 KLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 875 ~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
.++.++++.+. +......|.+|+.+..+++ .+|+|++|.|+-.
T Consensus 56 ~l~~~~l~~l~-~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~ 101 (260)
T 3kcc_A 56 PQTDPTLEWFL-SHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVL 101 (260)
T ss_dssp ---CHHHHHHH-TTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEE
T ss_pred CCCHHHHHHHH-hhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEE
Confidence 46777777766 5778889999999988876 8999999999875
No 92
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=25.61 E-value=2e+02 Score=28.26 Aligned_cols=87 Identities=11% Similarity=0.035 Sum_probs=50.1
Q ss_pred eEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEE-cceEEEEEEe
Q 001116 760 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVT-DSVVLCFFIE 838 (1152)
Q Consensus 760 ~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r~atv~A-~t~~~l~~I~ 838 (1152)
....+.+|..+-..--....+++|++|.+++...+ + ...+++||++=- -.+.+....... .+++.++.+-
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~---~---~~~l~~Gd~i~i---p~~~~H~~~n~~~~~~~~~l~i~ 129 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDD---R---VEPLTPLDCVYI---APHAWHQIHATGANEPLGFLCIV 129 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETT---E---EEEECTTCEEEE---CTTCCEEEEEESSSCCEEEEEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECC---E---EEEECCCCEEEE---CCCCcEEEEeCCCCCCEEEEEEE
Confidence 34556677765444445788999999999987533 2 246789987621 124444433333 4455544442
Q ss_pred -----------HHHHHHHHhhCHHHHHHH
Q 001116 839 -----------SDKILSILRSDPAVEDFL 856 (1152)
Q Consensus 839 -----------~~~f~~ll~~~p~l~~~i 856 (1152)
.+++.+ +.++|.++.++
T Consensus 130 ~~~~d~p~~p~~~~~~~-l~~~~~~~~~~ 157 (167)
T 3ibm_A 130 DSDRDRPQRPDADDLAR-MCADPAVARRI 157 (167)
T ss_dssp ESSCCCCBCCCHHHHHH-HTTSHHHHHHC
T ss_pred eCCcCcccCCCHHHHHH-HHcChHHHHhh
Confidence 333333 45777776543
No 93
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=25.22 E-value=42 Score=36.78 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=40.5
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
.+|+.++.+++..+. +......|.+|+.+..+++ .+|+|++|.|+...
T Consensus 19 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~ 69 (333)
T 4ava_A 19 DVFQGCPAEGLVSLA-ASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSH 69 (333)
T ss_dssp GGGTTCCHHHHHHHH-HHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEE
T ss_pred HhHhcCCHHHHHHHH-hhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEE
Confidence 467889999998877 4678889999999988886 89999999998753
No 94
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=23.71 E-value=1.9e+02 Score=32.68 Aligned_cols=32 Identities=22% Similarity=0.084 Sum_probs=0.0
Q ss_pred HhcCCCCC-CCCccchhHhhccceEEEEcCCceEEcCC
Q 001116 738 ISAHPLLR-ELPPSVREPLELSTKEIMKLSGVTLYREG 774 (1152)
Q Consensus 738 L~~~plF~-~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eG 774 (1152)
+...|||. .++.++.+.++.. -..|.+++++-
T Consensus 298 ~~~~~WyhG~isR~~AE~LL~~-----~~~G~FLVR~S 330 (373)
T 3hhm_B 298 HDEKTWNVGSSNRNKAENLLRG-----KRDGTFLVRES 330 (373)
T ss_dssp --------------------------------------
T ss_pred ccCCCCcCCCCCHHHHHHHhcc-----CCCCcEEEEec
Confidence 45578865 5777777777632 26899999887
No 95
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=23.56 E-value=1.3e+02 Score=27.66 Aligned_cols=49 Identities=14% Similarity=-0.025 Sum_probs=28.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhcccc
Q 001116 122 IKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSAT 171 (1152)
Q Consensus 122 lk~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~T 171 (1152)
+++.++.-.+..+..+++..++.|.+.+.... +|++..|+.++.+.-.|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e-~~~~~~a~y~~~~T~tT 63 (114)
T 2q67_A 15 CLRAWKDKEFQVLFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTT 63 (114)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHTS
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcc
Confidence 34444332233333444445566666665555 89999999988754443
No 96
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=23.48 E-value=68 Score=33.16 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=34.7
Q ss_pred hccHHHHHHHHH-HhhhhccccCCcEEEecCc---EEEEEEeeeeeec
Q 001116 875 KLTMQDMRALIA-ERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 918 (1152)
Q Consensus 875 ~L~~~dlr~ll~-~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~ 918 (1152)
+++.++++.++. .......|.+|+.+..+++ .+|+|++|.|+-.
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~ 50 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLT 50 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEE
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEE
Confidence 567788888773 2477789999999988775 8899999999865
No 97
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=22.15 E-value=1.6e+02 Score=29.13 Aligned_cols=44 Identities=9% Similarity=-0.149 Sum_probs=29.0
Q ss_pred EEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCcc
Q 001116 762 IMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811 (1152)
Q Consensus 762 ~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~f 811 (1152)
..+.+|..+-..--....+++|++|.+++... ++. ..+++||++
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~---g~~---~~l~~GD~i 101 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMVG---RAV---SAVAPYDLV 101 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEET---TEE---EEECTTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEEC---CEE---EEeCCCCEE
Confidence 34456665543334456789999999998653 222 467888876
No 98
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=21.99 E-value=31 Score=35.50 Aligned_cols=48 Identities=10% Similarity=0.233 Sum_probs=40.0
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeeecc
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 919 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~~~ 919 (1152)
.+|..++.+++..+. +......|.+|+.+..+++ .+|+|++|.|+-..
T Consensus 12 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~ 62 (231)
T 3e97_A 12 PLFQNVPEDAMREAL-KVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSR 62 (231)
T ss_dssp GGGTTCCHHHHHHHH-HTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEE
T ss_pred hhhccCCHHHHHHHH-HhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE
Confidence 467889999998877 4788889999999877765 89999999998653
No 99
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=20.04 E-value=36 Score=34.72 Aligned_cols=46 Identities=11% Similarity=0.254 Sum_probs=37.2
Q ss_pred HHHHhccHHHHHHHHHHhhhhccccCCcEEEecCc---EEEEEEeeeeee
Q 001116 871 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKT 917 (1152)
Q Consensus 871 ~~~e~L~~~dlr~ll~~~~~l~~y~~g~~i~i~~~---~~~ILl~G~V~~ 917 (1152)
.+|..++.+++..+. +......|.+|+.+..+++ .+|+|++|.|+-
T Consensus 10 ~~f~~l~~~~~~~l~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~ 58 (220)
T 2fmy_A 10 NLLEVLNSEEYSGVL-KEFREQRYSKKAILYTPNTERNLVFLVKSGRVRV 58 (220)
T ss_dssp CHHHHTTSGGGTTTG-GGSEEEEECTTCEEECTTCSSCEEEEEEESEEEE
T ss_pred hhhhcCCHHHHHHHH-HhhheeEeCCCCEEECCCCCCCeEEEEEecEEEE
Confidence 356677777777766 4677889999999988775 889999999986
Done!