RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 001116
(1152 letters)
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 213 bits (544), Expect = 2e-60
Identities = 115/439 (26%), Positives = 201/439 (45%), Gaps = 33/439 (7%)
Query: 36 AVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWAS 95
+ + + L+LG+ L +P LL++G+ G G L
Sbjct: 7 LLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPP--------GLNLISPDLE-- 56
Query: 96 IDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYD 155
+DP+L L +FL LLF +++ +++R +++LA P V+I+ +G P
Sbjct: 57 LDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-G 115
Query: 156 WSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMV 215
+ LLG +LS TDPVAV + K + K++ TI+EGESL+NDG IV++++ +
Sbjct: 116 IPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAAL 175
Query: 216 LGKS-FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFI----FNDTVIEIALTLAVSY 270
LG F G + +LG + +GL G L + + ++E LTL +++
Sbjct: 176 LGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAF 235
Query: 271 IAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGES-QQSLHYFWEMVAYIANTLIFIL 329
A+ A+ VSG+L V+ G+ R S + L FWE++ ++ N L+F+L
Sbjct: 236 AAYLLAEAL-GVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVL 294
Query: 330 SGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLF-VVGTLYPVLRNFGYGLEWKE 388
G + +L L++ + V ++R V +L L W+E
Sbjct: 295 LGAQLPLSLL--------LALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRE 346
Query: 389 AIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQY 448
+ L W+G RG V+L+L+L + + L +F ++ +L+V G T
Sbjct: 347 RLFLSWAGPRGVVSLALALLIP------LELPGPARELILFIVFLVILFSLLVQGLTLPP 400
Query: 449 ILHLLDMDKLSATKRRILD 467
+ L++ + SA + IL
Sbjct: 401 LAKKLEVSEESALAKEILG 419
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 186 bits (475), Expect = 7e-52
Identities = 115/409 (28%), Positives = 192/409 (46%), Gaps = 48/409 (11%)
Query: 36 AVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWAS 95
AV+ + ++L+ G+ R L +P V L++ GI LG G
Sbjct: 1 AVLLLLLALLAGLLARRL----GLPPVVGLILAGILLGPSGLGLVE------------PD 44
Query: 96 IDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYD 155
+D ++L + LP LLF + +++ ++++ ++LLA GV+I F LG L L
Sbjct: 45 LDLEVLAELGLPLLLFLAGLELDLRELRKNGKSILLLALLGVLI-PFLLGLLLALLGGLG 103
Query: 156 WSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTIIEGESLMNDGTAIVVYQLFFQM 214
+LL G LSAT PV V+A+LKE G + +L T+I GES++ND A+V+ + +
Sbjct: 104 IPLLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLAL 163
Query: 215 VL-GKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAF 273
G G ++ V+LG + +GL FG L F D +E+ L LA++ +A
Sbjct: 164 AGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDRELEVLLVLALALLAA 223
Query: 274 FTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVV 333
A+ +SG+L G+ ++ AF E + L F + L F+ G+
Sbjct: 224 LLAELL-GLSGILGAFLAGL---VLSNYAFANELSEKLEPFGY---GLFLPLFFVSVGLS 276
Query: 334 IAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILV 393
+ + + ++LL + + + +L V L +L GL +EA+I+
Sbjct: 277 LD--------LSSLLLSLLLLVLLLLVAILLGKLLGVFLLARLL-----GLSLREALIVG 323
Query: 394 WSGL-RGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIV 441
+ GL RGAV+L+L+ + LI E TL V +V LT ++
Sbjct: 324 FGGLQRGAVSLALAAIGLQ----LGLIDRELYTLLVA----VVLLTTLL 364
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 166 bits (423), Expect = 2e-43
Identities = 111/421 (26%), Positives = 190/421 (45%), Gaps = 42/421 (9%)
Query: 59 VPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME 118
VP +V L++ G+ +G + + H D L D LP ++ ++ + M
Sbjct: 35 VPESVLLIVYGLLVGGIIKASPHI-----DPPTL----DSSYFFLYLLPPIVLDAGYFMP 85
Query: 119 VHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPY------DWSWKTSLLLGGLLSATD 172
L +++ A G +I+ F +G +L D +LL G L+SA D
Sbjct: 86 QRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVD 145
Query: 173 PVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLF-------FQMVLGKSFGWGAI 225
PVAV+A+ +E ++KL II GESL+ND +V+Y F + V G
Sbjct: 146 PVAVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCA 205
Query: 226 IKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGV 285
F+ V+ G + +G+ FG F + IE +SY+++ A E +SG+
Sbjct: 206 SFFV--VTCGGLLVGVVFGFLVAFITRFTHHIRQIEPLFVFLISYLSYLFA-ETLHLSGI 262
Query: 286 LTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIF 345
L ++ G+ SQ ++ YF +M++ ++ TLIFI GV +
Sbjct: 263 LALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTE-------- 314
Query: 346 QNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-YGLEWKEAIILVWSGLRGAVALS 404
NH +W +++ F + R+ V TL + F + +K+ +++ ++GLRGAVA +
Sbjct: 315 -NHEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYAGLRGAVAFA 373
Query: 405 LSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRR 464
L+L LFV T +VF T+I G T + ++ +L + K +K +
Sbjct: 374 LAL-------LLDEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKGCISKTK 426
Query: 465 I 465
I
Sbjct: 427 I 427
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 152 bits (385), Expect = 1e-38
Identities = 111/420 (26%), Positives = 189/420 (45%), Gaps = 43/420 (10%)
Query: 58 RVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAM 117
R+PY +AL++ G+ LG +D +++L +FLP LLFE++
Sbjct: 21 RLPYPIALILAGLLLGLAGLLPEVP-------------LDREIVLFLFLPPLLFEAAMNT 67
Query: 118 EVHQIKRCLVQMILLAGPGVMISTFFLGAALK--LTFPYDWSWKTSLLLGGLLSATDPVA 175
++ +++ + L+A V+++T +G +L L P +L+LG +LS TD VA
Sbjct: 68 DLRELRENFRPIALIAFLLVVVTTVVVGFSLNWILGIPL----ALALILGAVLSPTDAVA 123
Query: 176 VVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKS-FGWGAIIKFLAQVSL 234
V+ K + A KKL+ ++EGESL+NDG A+VV+ + + LGK F A V +
Sbjct: 124 VLGTFKSIRAPKKLSILLEGESLLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCV 183
Query: 235 GAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMF 294
G + GLA G + L +D ++EIALT+ + F A+ SGV+ V+ G+
Sbjct: 184 GGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLAER-FHFSGVIAVVAAGLI 242
Query: 295 YAAVART-AFKGESQQSLHYFWEMVAYIANTLIFILSGVVI---------AEGILGNDKI 344
R + ++ FW ++ ++ N +IFIL GV + I
Sbjct: 243 LTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVI 302
Query: 345 FQNHGNSWGYLI----LLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGA 400
N ++I F+ + F L FG + ++ W+GLRGA
Sbjct: 303 LALFTN--AFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGT----RWKHVVSWAGLRGA 356
Query: 401 VALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSA 460
+ L+L+LS + VF G++ +L+V G + + + + S
Sbjct: 357 IPLALALSFPNQLLSGMAFPAR--YELVFLAAGVILFSLLVQGISLPIFVKRKFVSEHSE 414
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 95.9 bits (239), Expect = 3e-20
Identities = 100/434 (23%), Positives = 182/434 (41%), Gaps = 59/434 (13%)
Query: 34 TDAVIFVGISLVLGIACRHLLRGTR--VPYTVALLIIGIALGSLEYGTSHQLGKIGDGIR 91
T +I + S+++ ++ L +R VP + L IG+ G LG I
Sbjct: 4 TINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGV------DGLGGIEFDNY 57
Query: 92 LWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151
+A + +L LA+ +LF+ F ++ + + LA GV+I++ G A
Sbjct: 58 PFAYMVGNLALAI----ILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYL 113
Query: 152 FPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLF 211
+ W LL+G ++ +TD AV +LL ++++ + +E ES ND A+ +
Sbjct: 114 L--NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVASTLEIESGSNDPMAVFLTITL 171
Query: 212 FQMVLGKSFG--WGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVS 269
+++ G WG ++ FL Q LG + +GL G + + I D+ + L LA
Sbjct: 172 IELIAGGETNLSWGFLLGFLQQFGLGLL-LGLGGGKLLLQLINRINLDSGLYPILALAGG 230
Query: 270 YIAF-FTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFI 328
+ F T G SG+L V G+ ++ + F++ +A++A L+F+
Sbjct: 231 LLIFSLTGAIGG--SGILAVYLAGLLLGNR-----PIRARHGILRFFDGLAWLAQILMFL 283
Query: 329 LSGVVIAEGILGNDKIFQNHGNSWGY----LILLYIFVQVSRLFVVGTLYPVLRNFGYGL 384
+ G+++ ++L + V+R V R
Sbjct: 284 VLGLLV------------TPSQLLPIAIPAILLSLWMIFVARPLAVFLGLIPFR-----F 326
Query: 385 EWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLF---VFFTGGIVFLTLIV 441
+E + + W GLRGAV + L++ G E LF FF +V ++L++
Sbjct: 327 NRREKLFVSWVGLRGAV--PIILAIFPMMAG-----LENARLFFNVAFF---VVLVSLLI 376
Query: 442 NGSTTQYILHLLDM 455
GST + L +
Sbjct: 377 QGSTLPWAAKKLKV 390
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed.
Length = 562
Score = 84.5 bits (210), Expect = 1e-16
Identities = 92/372 (24%), Positives = 154/372 (41%), Gaps = 74/372 (19%)
Query: 110 LFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLS 169
LF+ + L + LA GV+I+ G W LLLG ++
Sbjct: 71 LFDGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLL--GLDWLEGLLLGAIVG 128
Query: 170 ATDPVAVVALLKELGAS--KKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFG--WGAI 225
+TD AV +LL+ G + +++ + +E ES ND A+ + +++ G G WG +
Sbjct: 129 STDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFL 188
Query: 226 IKFLAQVSLGAVGMGLAFGIASVLWLG-FIFNDTVIEIA-----LTLAVSYIAF-FTAQE 278
+ FL Q LGA+ +GL G WL + N + L LA + + F TA
Sbjct: 189 LLFLQQFGLGAL-IGLLGG-----WLLVQLLNRIALPAEGLYPILVLAGALLIFALTAAL 242
Query: 279 GADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGV------ 332
G SG L V G+ + S+ F++ +A++A +F++ G+
Sbjct: 243 GG--SGFLAVYLAGL-VLGNRPIRHR----HSILRFFDGLAWLAQIGMFLVLGLLVTPSR 295
Query: 333 ---VIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSR-LFVVGTLYPVLRNFGYGLEWKE 388
+ +L L L I V +R L V +L P + +E
Sbjct: 296 LLDIALPALL---------------LALFLILV--ARPLAVFLSLLP------FRFNLRE 332
Query: 389 AIILVWSGLRGAVALSLSLSVKRSSG--GSSLITSETGTLF--VFFTGGIVFLTLIVNGS 444
+ + W GLRGAV + L+ + +G + LI F VFF +V ++L++ G+
Sbjct: 333 KLFISWVGLRGAVPIVLA-TFPMMAGLPNAQLI-------FNVVFF---VVLVSLLLQGT 381
Query: 445 TTQYILHLLDMD 456
T + L +
Sbjct: 382 TLPWAARKLGVV 393
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 397
Score = 60.7 bits (148), Expect = 2e-09
Identities = 81/413 (19%), Positives = 150/413 (36%), Gaps = 49/413 (11%)
Query: 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLW 93
+I + ++++LG + L +P + L+ GI LG + + + I L
Sbjct: 9 LQLLILLLVAVILGPLFKRL----GLPPVLGYLLAGIILGPWGLL---LIIESSEIIELL 61
Query: 94 ASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFP 153
A L V LLF ++ ++K+ + L + + F LG L L
Sbjct: 62 AE------LGVVF--LLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLL-LLGI 112
Query: 154 YDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTIIEGESLMNDGTAIVVYQLFF 212
S +L LG L+ + V+ +L ELG + +I G + +D AI++ +
Sbjct: 113 LGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVP 172
Query: 213 QMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIA 272
+ G S G I+ L + L + + L G + L T L + +
Sbjct: 173 ALAGGGSGSVGFILGLLLAI-LAFLALLLLLGRYLLPPLFRRVAKTESS-ELFILFVLLL 230
Query: 273 FFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI----FI 328
A A++ G+ M LG F A + + + + + + L FI
Sbjct: 231 VLGAAYLAELLGL--SMILGAFLAGLLLSESEYRKHELEEK----IEPFGDGLFIPLFFI 284
Query: 329 LSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKE 388
G+ + G+L + + LILL + + + L + Y R G+ K
Sbjct: 285 SVGMSLDLGVLLENLL----------LILLLVALAI--LGKILGAYLAARLLGFS---KR 329
Query: 389 AIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIV 441
+ + LR + V S I+ T V + ++ ++
Sbjct: 330 LALGIGLLLRQGGEFAF---VLAGIALGSAISEALLTAVVILS--MITTPILP 377
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.
Length = 91
Score = 46.5 bits (111), Expect = 2e-06
Identities = 18/85 (21%), Positives = 34/85 (40%)
Query: 767 GVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDM 826
G ++REG ++++ +G VK + + G G +L G+P + +
Sbjct: 7 GEVIFREGDPADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALLGGEPRSATV 66
Query: 827 VTDSVVLCFFIESDKILSILRSDPA 851
V + I + L +L DP
Sbjct: 67 VALTDSELLVIPREDFLELLEQDPE 91
>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and
regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms].
Length = 214
Score = 43.3 bits (102), Expect = 3e-04
Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 2/150 (1%)
Query: 737 LISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIR 796
+ +PLL LP + E L L + G L+ EG + +++I +G+VK + +
Sbjct: 1 ALKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTED 60
Query: 797 NKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFL 856
+ + G G +L G P + V + V I L +L P + L
Sbjct: 61 GREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALAL 120
Query: 857 WQQSAIALSRILLPQIFEKLTMQDMRALIA 886
+ A L + L + L +D+ +A
Sbjct: 121 LRLLARRLRQAL--ERLSLLARKDVEERLA 148
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2
(CPA2) family. [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 273
Score = 41.1 bits (97), Expect = 0.002
Identities = 48/258 (18%), Positives = 92/258 (35%), Gaps = 21/258 (8%)
Query: 44 LVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLA 103
L+ + L R +P + L+ G+ +G G + +G+ A
Sbjct: 1 LLAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNV----EGVNHLA------EFG 50
Query: 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLL 163
V L L+F +++ ++ + + V++ LG L + +++
Sbjct: 51 VIL--LMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLL--GLALGAAVV 106
Query: 164 LGGLLSATDPVAVVALLKELGASK-KLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGW 222
+G +L+ + VV +LKE G K + G L D + + L + S
Sbjct: 107 IGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTEH 166
Query: 223 GAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADV 282
A+ L +V L + + L WL E+ + + + A
Sbjct: 167 VALALLLLKVFLAFLLLVLL-----GRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYF 221
Query: 283 SGVLTV-MTLGMFYAAVA 299
+ +L + M LG F A V
Sbjct: 222 ADLLGLSMALGAFLAGVV 239
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO sensor. In all
cases binding of the effector leads to conformational
changes and the ability to activate transcription.
Cyclic nucleotide-binding domain similar to CAP are also
present in cAMP- and cGMP-dependent protein kinases
(cAPK and cGPK) and vertebrate cyclic nucleotide-gated
ion-channels. Cyclic nucleotide-monophosphate binding
domain; proteins that bind cyclic nucleotides (cAMP or
cGMP) share a structural domain of about 120 residues;
the best studied is the prokaryotic catabolite gene
activator, CAP, where such a domain is known to be
composed of three alpha-helices and a distinctive
eight-stranded, antiparallel beta-barrel structure;
three conserved glycine residues are thought to be
essential for maintenance of the structural integrity of
the beta-barrel; CooA is a homodimeric transcription
factor that belongs to CAP family; cAMP- and
cGMP-dependent protein kinases (cAPK and cGPK) contain
two tandem copies of the cyclic nucleotide-binding
domain; cAPK's are composed of two different subunits, a
catalytic chain and a regulatory chain, which contains
both copies of the domain; cGPK's are single chain
enzymes that include the two copies of the domain in
their N-terminal section; also found in vertebrate
cyclic nucleotide-gated ion-channels.
Length = 115
Score = 38.5 bits (90), Expect = 0.002
Identities = 16/110 (14%), Positives = 37/110 (33%)
Query: 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLH 802
L L E L + +E +G + R+G ++++ +G V+ + +
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60
Query: 803 PVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAV 852
G G +L P + + + + +L+ P +
Sbjct: 61 GFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPEL 110
>gnl|CDD|225775 COG3235, COG3235, Predicted membrane protein [Function unknown].
Length = 223
Score = 34.4 bits (79), Expect = 0.24
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 46 LGIACRHLLRGTRVPYTVALLI-IGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAV 104
L + L+ G +ALL+ + + L LG W + P+ L +
Sbjct: 68 LAVTLVTLMLGWSAALWLALLLMLPLCL----------LGAQS-----WGAYPPNNALVL 112
Query: 105 FLPALLFESSFAMEVHQIKRCLVQMILLAG 134
LPAL+ M V+++ R + I + G
Sbjct: 113 ILPALIVNRLSRMLVNRLPRNIFVFIFVNG 142
>gnl|CDD|217254 pfam02861, Clp_N, Clp amino terminal domain. This short domain is
found in one or two copies at the amino terminus of ClpA
and ClpB proteins from bacteria and eukaryotes. The
function of these domains is uncertain but they may form
a protein binding site.
Length = 53
Score = 29.4 bits (67), Expect = 0.92
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 627 AHKIARQQLHDFIG-----------DSGIASVVIEESKVEGEDARKFLEDVR 667
A ++A++ H +IG D GIA+ +++++ V+ + R+ +E +
Sbjct: 1 AQELAKELGHQYIGTEHLLLALLEEDDGIAARLLKKAGVDLDALREAIEKLL 52
>gnl|CDD|224099 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
[Inorganic ion transport and metabolism].
Length = 540
Score = 33.0 bits (76), Expect = 0.92
Identities = 36/205 (17%), Positives = 61/205 (29%), Gaps = 37/205 (18%)
Query: 222 WGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGAD 281
++ + L V L L + +L ++ A
Sbjct: 295 IVLLLFLILLPLLAVVLPSFVLNWGRPLSLVLASPQFWQALLNSLLLALAA--------- 345
Query: 282 VSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEG--IL 339
+L V+ L + A R + + L + GVV+A G +L
Sbjct: 346 --ALLAVV-LALLLAYAVRRL---------RSRLSRLLERLSMLPLAVPGVVLALGLLLL 393
Query: 340 GNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLE-------------- 385
+ + LIL+ + F V +L LR LE
Sbjct: 394 FRAPDGLLYQPLYTLLILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRF 453
Query: 386 WKEAIILVWSGLRGAVALSLSLSVK 410
+ + L+ GL A AL +LS+
Sbjct: 454 RRITLPLLRPGLLAAAALVFALSIG 478
>gnl|CDD|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals. Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in (1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles. This model is specific for the
fungal members of this family [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 810
Score = 32.6 bits (74), Expect = 1.4
Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 28/254 (11%)
Query: 150 LTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASK---KLNTIIEGESLMNDGTAIV 206
L FP SLL+G ++ATDPV +++ A K L ++ ES NDG A
Sbjct: 128 LNFP------ASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLLSCESGCNDGLAFP 181
Query: 207 VYQLFFQMVLGKSFGWGAIIK------FLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVI 260
L ++L G G I+K L + G++ +G G + F +I
Sbjct: 182 FVFLSMDLLLYPGRG-GEIVKDWICVTILWECIFGSI-LGCIIGYCGRKAIRFAEGKNII 239
Query: 261 EIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHY--FWEMV 318
+ LA I T A +L V L + + A A+ G Q H ++
Sbjct: 240 DRESFLAFYLILALTC---AGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVI 296
Query: 319 AYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLR 378
+ N F+ G ++ N I + W +IL + + + R+ V L P++
Sbjct: 297 DVLLNYAYFVYLGSILPWKDFNNGDIGL---DVWRLIILSLVVIFLRRIPAVLILKPLIP 353
Query: 379 NFGYGLEWKEAIIL 392
+ W+EA+ +
Sbjct: 354 DIK---SWREAMFI 364
>gnl|CDD|236587 PRK09606, PRK09606, DNA-directed RNA polymerase subunit B'';
Validated.
Length = 494
Score = 32.2 bits (74), Expect = 2.0
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 623 AFLRAHKIARQQL---HDFIGDSGIASVVIEESKVEGEDARKF---LEDVRVNFPQV 673
A+ + H++ R + +DF+ D+G+ ++ E+ +E E L +RV P V
Sbjct: 11 AYFKEHRLVRHHIDSYNDFV-DNGLQKIIDEQGPIETEIEDGVYVELGKIRVGKPVV 66
>gnl|CDD|218514 pfam05231, MASE1, MASE1. Predicted integral membrane sensory
domain found in histidine kinases, diguanylate cyclases
and other bacterial signaling proteins. This entry also
includes members of the 8 transmembrane UhpB type
(8TMR-UT) domain family.
Length = 298
Score = 31.6 bits (72), Expect = 2.1
Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 15/158 (9%)
Query: 220 FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEG 279
++FL ++ A + G+A +L LG + E LT +
Sbjct: 103 LQLLFWLRFLLAAAIIAALLLAIIGLALLLLLGLLPLAPFAESWLTWWLG---------- 152
Query: 280 ADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGIL 339
+GVL + L + R + + L + L +++ +L
Sbjct: 153 -SATGVLVLAPLLLLL----RRYLRQRHRLPLWPELLLAPVALKLLHLFWLLLLLILSLL 207
Query: 340 GNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVL 377
+ GYL+L + R G L
Sbjct: 208 LQLLLPPELNYFLGYLLLPPLLWAAFRFGWQGAALATL 245
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 31.3 bits (71), Expect = 2.6
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 444 STTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIR 503
S + YI+ LLD++ + + Y +E L++ K F D P+ T+K +
Sbjct: 58 SESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSF-- 115
Query: 504 CLNDLEGVPMHPHSASETGDSLDPTNL 530
L+GV H H L P NL
Sbjct: 116 MYQLLKGV-AHCHKHGVMHRDLKPQNL 141
>gnl|CDD|215162 PLN02288, PLN02288, mannose-6-phosphate isomerase.
Length = 394
Score = 31.6 bits (72), Expect = 2.9
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 807 HGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 866
H +Y+ KP M+ +T+ LC F+ ++ ++LR+ P + + + ++A L
Sbjct: 116 HAEQPNVYKDDNHKPEMALALTEFEALCGFVTIQELKAVLRTVPELRELVGSEAADQLLA 175
Query: 867 I 867
+
Sbjct: 176 L 176
>gnl|CDD|236332 PRK08668, PRK08668, NADH dehydrogenase subunit M; Validated.
Length = 610
Score = 31.5 bits (72), Expect = 2.9
Identities = 42/185 (22%), Positives = 66/185 (35%), Gaps = 29/185 (15%)
Query: 205 IVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIF--------N 256
I+ + F + +GK A +K+ ++GA M A + F F N
Sbjct: 129 IMTFSSFMMVPMGKKESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLIN 188
Query: 257 DTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAV-ARTAFKGESQQSLHYFW 315
DT AL + + +AF V G+F V A A+ E+ QS
Sbjct: 189 DTSTGFALIVFLFLLAF-------------GVAKAGIFPLHVWAPDAY-SEAPQSFSAVL 234
Query: 316 EMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRL-FVVGTLY 374
F+L V+ K+F G G + YI + + +VGTL
Sbjct: 235 SGQLSKLGAYGFLLVLYVLPGT-----KLFSEFGTYRGVPLFNYILAWLGNISIIVGTLM 289
Query: 375 PVLRN 379
+L+
Sbjct: 290 AILQE 294
>gnl|CDD|212104 cd10792, GH57N_AmyC_like, N-terminal catalytic domain of
alpha-amylase ( AmyC ) and similar proteins.
Alpha-amylases (alpha-1,4-glucan-4-glucanohydrolases, EC
3.2.1.1) play essential roles in alpha-glucan metabolism
by catalyzing the hydrolysis of polysaccharides such as
amylose starch, and beta-limit dextrin. This subfamily
is represented by a novel alpha-amylase (AmyC) encoded
by hyperthermophilic organism Thermotoga maritime ORF
tm1438, and its prokaryotic homologs. AmyC functions as
a homotetramer and shows thermostable amylolytic
activity. It is strongly inhibited by acarbose. AmyC is
composed of a N-terminal catalytic domain, containing a
distorted TIM-barrel structure with a characteristic
(beta/alpha)7 fold motif, and two additional less
conserved domains. There are other two canonical
alpha-amylases encoded from T. maritime that lack the
sequence similarity to AmyC, and belong to a different
superfamily.
Length = 412
Score = 31.3 bits (72), Expect = 3.3
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 11/43 (25%)
Query: 742 PLLRELPPSVREPLELSTKEIMKLSGVTLYRE--GSKPSGIWL 782
PL ++ P +VR +E GV YR G KP GIWL
Sbjct: 152 PLYQDYPEAVRAQIET---------GVRSYRRHFGRKPRGIWL 185
>gnl|CDD|237642 PRK14224, PRK14224, camphor resistance protein CrcB; Provisional.
Length = 126
Score = 29.7 bits (67), Expect = 3.5
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 19/102 (18%)
Query: 28 PSEGNPTDAVIFVGISLVLGIACRHLL-------RGTRVPYTVALLIIGIALGSLEYGTS 80
PS D + +G LG CR L+ GT + ++G+ + EY
Sbjct: 2 PSTYKDIDKLFLIGAGGFLGAICRFLICELIEGQLGTLSVNVLGSFMLGMIMYDTEY--- 58
Query: 81 HQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQI 122
+G IG RL FL A S+FA++ +
Sbjct: 59 --IGFIGPKGRLAFGTG-------FLGAFTTFSTFAVQSFSM 91
>gnl|CDD|131765 TIGR02718, sider_RhtX_FptX, siderophore transporter, RhtX/FptX
family. RhtX from Sinorhizobium meliloti 2011 and FptX
from Pseudomonas aeruginosa appear to be single
polypeptide transporters, from the major facilitator
family (see pfam07690) for import of siderophores as a
means to import iron. This function was suggested by
proximity to siderophore biosynthesis genes and then
confirmed by study of knockout and heterologous
expression phenotypes [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 390
Score = 31.0 bits (70), Expect = 3.8
Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 6/119 (5%)
Query: 136 GVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLK----ELGASKKLNT 191
GVMI FF G A L + + + LL + V V+ L A
Sbjct: 141 GVMIG-FFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAPLARRA 199
Query: 192 IIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVG-MGLAFGIASVL 249
+ +++ L M FG + A L +G +G+A G +VL
Sbjct: 200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVL 258
>gnl|CDD|165252 PHA02942, PHA02942, putative transposase; Provisional.
Length = 383
Score = 31.1 bits (70), Expect = 3.8
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 876 LTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITP 927
+ ++D++ LI + +K+ R ++ + YH I + +E K HG+ E + P
Sbjct: 270 IKLEDLKNLIKDVNKLPAEFRDKLYLMQYHRIQYWIEWQAKKHGMIVEFVNP 321
>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 290
Score = 30.7 bits (70), Expect = 3.8
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 17/65 (26%)
Query: 205 IVVYQL---FF---QMVLGKSFGWGAIIKFLA---QVSLGAVGMGLAFGIASVLW-LGFI 254
I +Y L F Q+VL ++G+ +I + A + LG + A+V W LGF
Sbjct: 128 IFLYPLAKRVFPVPQLVLAIAWGFAVLISWSAVTGHLDLGTWLL----WAATVFWTLGF- 182
Query: 255 FNDTV 259
DTV
Sbjct: 183 --DTV 185
>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family.
This group contains proteins related to the
zinc-dependent alcohol dehydrogenases. However, while
the group has structural zinc site characteristic of
these enzymes, it lacks the consensus site for a
catalytic zinc. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site, and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 342
Score = 30.3 bits (69), Expect = 5.8
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 894 CLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAA-LIPSQGNLSFRSAETSGVEAVS 952
CL G C + + G G E + PA L+P NLSF A A
Sbjct: 99 CLAGR----ENLCAQYGILGE-HVDGGYAEYVAVPARNLLPIPDNLSFEEA-----AAAP 148
Query: 953 FSHQGSCYLVETRARV 968
+ + +++ TRAR+
Sbjct: 149 LTFLTAWHMLVTRARL 164
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 30.6 bits (70), Expect = 6.0
Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 170 ATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFL 229
AT+ VV +E+ + +E TA + + L + II L
Sbjct: 37 ATERATVVYDPEEVDLPADIVAAVEKAGYSARLTAALADPAEAEARLLRELLRRLIIAGL 96
Query: 230 AQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADV--SGVLT 287
+ L + +GL G + W+ F + T + Y + + G L
Sbjct: 97 LTLPLLLLSLGLLLGAFLLPWVSF--------LLATPVLFYGGWPFYRGAWRALRRGRLN 148
Query: 288 VMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILS 330
+ TL + A + A+ + YF E A LIF+
Sbjct: 149 MDTL-VALATIGAYAYSLYATLFPVYFEE-----AAMLIFLFL 185
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal
solute carrier 6 subfamily; solute-binding domain.
SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporter family
or Na+/Cl--dependent transporter family) include
neurotransmitter transporters (NTTs): these are sodium-
and chloride-dependent plasma membrane transporters for
the monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine,
and the amino acid neurotransmitters GABA and glycine.
These NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 29.8 bits (68), Expect = 9.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 59 VPYTVALLIIGIALGSLEYGTSH 81
+PY +ALL GI L LEYG H
Sbjct: 41 IPYLIALLTAGIPLLILEYGLGH 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.398
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 59,346,420
Number of extensions: 6099078
Number of successful extensions: 5994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5914
Number of HSP's successfully gapped: 165
Length of query: 1152
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 1045
Effective length of database: 6,191,724
Effective search space: 6470351580
Effective search space used: 6470351580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (28.7 bits)