RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 001116
(1152 letters)
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 47.8 bits (113), Expect = 5e-07
Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 731 FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKW 790
F + L++A PL ++L P+V + + + +G + R G ++ + G V
Sbjct: 6 FVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSV 65
Query: 791 TSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 850
G+ G ++ G+P + + + V + S + S P
Sbjct: 66 A-------TPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSP 118
Query: 851 AVEDFLWQQSA 861
+ + + +
Sbjct: 119 EIAEIFRKTAL 129
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 46.0 bits (108), Expect = 3e-06
Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 5/145 (3%)
Query: 717 SDLKRLLRNPPLVKFPK----ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYR 772
++ L PL + + I + + P++ + L G+TL+R
Sbjct: 1 AEWIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFR 60
Query: 773 EGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLI-GKPYMSDMVTDSV 831
+G + + + G + + + T G E ++ P + +VT
Sbjct: 61 QGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESILDNTPRHATIVTRES 120
Query: 832 VLCFFIESDKILSILRSDPAVEDFL 856
IE + ++ L
Sbjct: 121 SELLRIEQEDFKALWEKYRQYMAGL 145
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 43.6 bits (102), Expect = 1e-05
Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 5/118 (4%)
Query: 733 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTS 792
++ I + L L + R + + + ++G T+ ++G + ++I G +
Sbjct: 17 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDV-- 74
Query: 793 KSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 850
+ G + G ++ G P + + + V + I+ D IL
Sbjct: 75 ---YVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGST 129
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 41.7 bits (97), Expect = 6e-05
Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 1/118 (0%)
Query: 736 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSI 795
+ +S +L L R + + + + G + +G ++I G +
Sbjct: 2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRS 61
Query: 796 RNKHSLHPV-FTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAV 852
N+ + G +L+ +P + +V + C ++ + +L +
Sbjct: 62 ENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDI 119
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 38.2 bits (88), Expect = 0.001
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 6/123 (4%)
Query: 736 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSI 795
I + P L+ L S R + + G + +G +++ +G V+ T K
Sbjct: 2 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRK 61
Query: 796 RNKHSLHP------VFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSD 849
G G ++ KP + V C ++ +L
Sbjct: 62 GKSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPC 121
Query: 850 PAV 852
+
Sbjct: 122 MEI 124
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 36.3 bits (83), Expect = 0.004
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 6/120 (5%)
Query: 734 ISDLISAHPLLRELPPSVREPLELSTKEIMKLS-GVTLYREGSKPSGIWLISNGVVKWTS 792
I D + L L +V+ L G L+ +G + + ++I G V
Sbjct: 8 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSV---- 63
Query: 793 KSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDS-VVLCFFIESDKILSILRSDPA 851
+ + G + G ++ P + +V ++ + ILR A
Sbjct: 64 NVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA 123
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 27.2 bits (60), Expect = 2.9
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 663 LEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRL 722
LE ++ P + + S+L +I+ LE +++ +H D +Q + + L
Sbjct: 20 LEKLKGLVPLGPDSSRHTTL--SLLTKAKLHIKKLED----SDRKAVHQIDQLQREQRHL 73
Query: 723 LR 724
R
Sbjct: 74 KR 75
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 90
Score = 26.5 bits (59), Expect = 5.1
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 678 KTRQVTYSVLNH--LIDYIQNLEKVGLLEEKE 707
KTR + + L++ YI+ L + ++ ++
Sbjct: 21 KTRIMYGANLSYALTGRYIKMLMDLEIIRQEG 52
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 27.9 bits (61), Expect = 8.6
Identities = 10/57 (17%), Positives = 21/57 (36%)
Query: 235 GAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTL 291
+ +G G A + +F +E A A A ++G++ V+ +
Sbjct: 343 PMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEM 399
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.398
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,142,263
Number of extensions: 194917
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 10
Length of query: 1152
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1057
Effective length of database: 1,103,246
Effective search space: 1166131022
Effective search space used: 1166131022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)