Query 001117
Match_columns 1151
No_of_seqs 560 out of 2979
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 16:17:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-137 2E-142 1259.8 73.0 1015 1-1096 362-1404(1463)
2 PTZ00014 myosin-A; Provisional 100.0 1E-106 2E-111 998.4 36.9 416 1-416 396-818 (821)
3 KOG0160 Myosin class V heavy c 100.0 2E-104 5E-109 951.6 40.7 457 1-463 301-758 (862)
4 KOG0161 Myosin class II heavy 100.0 3.1E-98 7E-103 959.3 60.8 657 1-686 382-1118(1930)
5 cd01384 MYSc_type_XI Myosin mo 100.0 1.4E-98 3E-103 916.2 35.0 374 1-374 301-674 (674)
6 KOG0164 Myosin class I heavy c 100.0 3E-98 6E-103 845.7 32.4 435 1-445 304-756 (1001)
7 cd01380 MYSc_type_V Myosin mot 100.0 3.4E-95 7E-100 892.0 34.2 369 1-370 299-691 (691)
8 cd01377 MYSc_type_II Myosin mo 100.0 4.8E-95 1E-99 890.9 34.3 370 1-370 308-693 (693)
9 cd01378 MYSc_type_I Myosin mot 100.0 6E-95 1.3E-99 887.6 34.6 369 1-370 295-674 (674)
10 cd01381 MYSc_type_VII Myosin m 100.0 4.5E-95 1E-99 886.7 33.1 370 1-370 295-671 (671)
11 cd01383 MYSc_type_VIII Myosin 100.0 1.6E-94 3.4E-99 881.1 34.3 366 1-370 298-677 (677)
12 cd01387 MYSc_type_XV Myosin mo 100.0 1.7E-94 3.8E-99 882.3 34.6 369 1-370 296-677 (677)
13 cd01385 MYSc_type_IX Myosin mo 100.0 1E-93 2.3E-98 877.4 34.5 367 1-370 307-688 (692)
14 cd01382 MYSc_type_VI Myosin mo 100.0 1.1E-93 2.5E-98 880.1 34.0 367 1-369 327-715 (717)
15 cd01379 MYSc_type_III Myosin m 100.0 5.4E-93 1.2E-97 864.5 34.4 347 1-370 302-653 (653)
16 smart00242 MYSc Myosin. Large 100.0 2.8E-92 6.2E-97 868.8 34.7 371 1-371 303-677 (677)
17 KOG0162 Myosin class I heavy c 100.0 7.9E-92 1.7E-96 792.9 24.3 400 1-404 312-725 (1106)
18 cd00124 MYSc Myosin motor doma 100.0 1.7E-90 3.8E-95 855.9 34.4 370 1-370 296-679 (679)
19 cd01386 MYSc_type_XVIII Myosin 100.0 3E-89 6.6E-94 841.6 32.3 370 1-370 294-767 (767)
20 KOG0163 Myosin class VI heavy 100.0 1E-84 2.2E-89 735.3 53.9 436 1-447 381-837 (1259)
21 PF00063 Myosin_head: Myosin h 100.0 2.6E-85 5.7E-90 820.8 29.6 359 1-359 297-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 2.5E-52 5.3E-57 515.1 14.6 508 2-512 360-1007(1062)
23 KOG1892 Actin filament-binding 100.0 9.5E-33 2.1E-37 320.0 21.9 310 741-1120 541-865 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 8.6E-29 1.9E-33 235.3 5.6 105 971-1078 1-105 (105)
25 KOG0161 Myosin class II heavy 99.2 2.7E-08 5.8E-13 131.8 38.2 205 90-321 413-627 (1930)
26 KOG0160 Myosin class V heavy c 98.3 2.3E-06 4.9E-11 106.0 10.6 86 423-511 673-758 (862)
27 KOG0520 Uncharacterized conser 98.3 1.1E-06 2.4E-11 108.7 7.2 119 373-491 808-934 (975)
28 COG5022 Myosin heavy chain [Cy 98.1 0.00067 1.5E-08 87.1 26.1 89 423-511 745-834 (1463)
29 KOG4229 Myosin VII, myosin IXB 98.0 2.9E-06 6.3E-11 107.7 2.7 216 242-465 789-1008(1062)
30 KOG0971 Microtubule-associated 97.9 0.015 3.3E-07 70.9 31.6 65 520-584 289-356 (1243)
31 KOG0520 Uncharacterized conser 97.7 5.1E-05 1.1E-09 94.3 7.6 116 399-518 811-938 (975)
32 KOG1029 Endocytic adaptor prot 97.7 0.0068 1.5E-07 72.7 22.9 101 584-684 412-512 (1118)
33 PF09726 Macoilin: Transmembra 97.5 0.022 4.7E-07 71.5 26.7 32 565-596 543-574 (697)
34 PF12718 Tropomyosin_1: Tropom 97.3 0.046 1E-06 54.9 20.8 124 525-670 11-134 (143)
35 PRK11637 AmiB activator; Provi 97.3 0.077 1.7E-06 63.8 26.2 29 611-639 172-200 (428)
36 KOG0250 DNA repair protein RAD 97.2 1.1 2.4E-05 57.3 35.5 14 332-345 159-172 (1074)
37 TIGR02169 SMC_prok_A chromosom 97.2 0.67 1.4E-05 63.3 37.5 8 73-80 6-13 (1164)
38 KOG0996 Structural maintenance 97.2 0.82 1.8E-05 58.6 33.6 47 1026-1075 1169-1218(1293)
39 KOG1029 Endocytic adaptor prot 97.2 0.48 1E-05 57.6 30.1 25 991-1015 1008-1032(1118)
40 PF09726 Macoilin: Transmembra 97.0 0.091 2E-06 66.0 24.4 26 662-687 626-651 (697)
41 PRK04863 mukB cell division pr 97.0 0.52 1.1E-05 64.2 31.9 38 649-686 440-477 (1486)
42 PRK11637 AmiB activator; Provi 96.9 0.32 7E-06 58.4 27.2 72 611-682 179-250 (428)
43 COG1579 Zn-ribbon protein, pos 96.9 0.34 7.3E-06 52.5 23.7 51 608-658 88-138 (239)
44 KOG0971 Microtubule-associated 96.9 0.24 5.2E-06 61.1 24.4 27 942-968 898-924 (1243)
45 KOG0996 Structural maintenance 96.8 1.4 3E-05 56.6 31.4 12 335-346 209-220 (1293)
46 TIGR02168 SMC_prok_B chromosom 96.8 0.89 1.9E-05 62.0 33.5 35 116-150 131-165 (1179)
47 PF00612 IQ: IQ calmodulin-bin 96.8 0.0013 2.7E-08 43.1 2.7 20 424-443 2-21 (21)
48 KOG0164 Myosin class I heavy c 96.8 0.0079 1.7E-07 71.8 11.1 62 422-493 695-756 (1001)
49 TIGR02168 SMC_prok_B chromosom 96.7 2.4 5.2E-05 57.9 37.0 10 337-346 124-133 (1179)
50 KOG0933 Structural maintenance 96.7 0.25 5.4E-06 61.9 23.7 30 608-637 786-815 (1174)
51 PF00261 Tropomyosin: Tropomyo 96.7 0.5 1.1E-05 52.0 24.2 43 643-685 175-217 (237)
52 KOG0933 Structural maintenance 96.7 1.8 3.9E-05 54.7 30.4 13 138-150 157-169 (1174)
53 KOG0250 DNA repair protein RAD 96.6 3.7 8E-05 52.9 35.5 68 618-685 396-463 (1074)
54 COG1196 Smc Chromosome segrega 96.6 3.8 8.3E-05 55.7 36.0 15 293-307 501-515 (1163)
55 KOG1853 LIS1-interacting prote 96.5 0.88 1.9E-05 48.4 22.8 17 666-682 165-181 (333)
56 PF07888 CALCOCO1: Calcium bin 96.5 0.33 7.2E-06 58.3 22.4 21 525-545 161-181 (546)
57 PF14662 CCDC155: Coiled-coil 96.5 0.55 1.2E-05 48.6 20.7 29 609-637 102-130 (193)
58 PRK02224 chromosome segregatio 96.5 0.2 4.3E-06 66.2 22.7 32 653-684 601-632 (880)
59 PF07888 CALCOCO1: Calcium bin 96.4 0.51 1.1E-05 56.8 23.4 24 522-545 151-174 (546)
60 PF00261 Tropomyosin: Tropomyo 96.4 0.13 2.8E-06 56.6 17.0 22 560-581 36-57 (237)
61 PF12718 Tropomyosin_1: Tropom 96.3 0.76 1.6E-05 46.3 20.8 58 627-684 77-134 (143)
62 COG4942 Membrane-bound metallo 96.3 1.8 4E-05 50.5 25.9 24 560-583 87-110 (420)
63 PRK02224 chromosome segregatio 96.3 2.7 5.8E-05 55.7 31.5 7 356-362 133-139 (880)
64 PF15070 GOLGA2L5: Putative go 96.2 0.68 1.5E-05 57.5 23.9 79 608-686 152-230 (617)
65 KOG4673 Transcription factor T 96.2 3.5 7.7E-05 49.9 28.1 13 66-78 9-21 (961)
66 KOG0163 Myosin class VI heavy 96.2 2.7 5.9E-05 51.2 27.3 55 432-494 782-836 (1259)
67 KOG2128 Ras GTPase-activating 96.2 0.053 1.1E-06 70.1 14.4 91 428-518 540-646 (1401)
68 KOG2128 Ras GTPase-activating 96.2 0.064 1.4E-06 69.4 15.1 114 381-494 513-645 (1401)
69 PF00612 IQ: IQ calmodulin-bin 96.2 0.0064 1.4E-07 39.8 3.4 19 472-490 2-20 (21)
70 PF14662 CCDC155: Coiled-coil 96.1 2 4.4E-05 44.6 23.0 23 659-681 166-188 (193)
71 PRK09039 hypothetical protein; 96.1 0.44 9.5E-06 55.3 20.5 30 523-552 48-77 (343)
72 PHA02562 46 endonuclease subun 96.0 0.75 1.6E-05 57.5 23.3 30 608-637 298-327 (562)
73 KOG4643 Uncharacterized coiled 95.9 2.8 6.1E-05 53.0 26.4 47 524-581 173-219 (1195)
74 PRK03918 chromosome segregatio 95.9 0.73 1.6E-05 60.9 23.6 31 653-683 668-698 (880)
75 PF08317 Spc7: Spc7 kinetochor 95.8 1.6 3.6E-05 50.3 23.4 79 608-686 208-290 (325)
76 KOG0980 Actin-binding protein 95.8 1.9 4.1E-05 53.8 24.3 37 1030-1069 850-887 (980)
77 KOG1003 Actin filament-coating 95.8 2.6 5.7E-05 43.7 21.3 77 608-684 108-184 (205)
78 PF15066 CAGE1: Cancer-associa 95.6 2.4 5.3E-05 49.2 22.7 25 662-686 489-513 (527)
79 KOG0976 Rho/Rac1-interacting s 95.6 3 6.5E-05 51.2 24.3 38 649-686 268-305 (1265)
80 KOG0977 Nuclear envelope prote 95.6 4.1 8.9E-05 49.3 25.6 70 616-685 296-369 (546)
81 KOG0982 Centrosomal protein Nu 95.6 4.6 9.9E-05 46.5 24.3 21 613-633 329-349 (502)
82 PF12128 DUF3584: Protein of u 95.5 16 0.00035 49.9 37.4 27 1068-1095 1054-1081(1201)
83 KOG4643 Uncharacterized coiled 95.5 3.5 7.6E-05 52.2 24.9 16 73-88 30-45 (1195)
84 PF15397 DUF4618: Domain of un 95.4 5.3 0.00011 43.9 24.0 32 657-688 192-223 (258)
85 PRK09039 hypothetical protein; 95.4 1.8 3.9E-05 50.3 21.7 12 533-544 79-90 (343)
86 PF12128 DUF3584: Protein of u 95.4 17 0.00038 49.6 37.0 19 393-411 240-258 (1201)
87 KOG0994 Extracellular matrix g 95.3 13 0.00028 47.9 29.1 21 663-683 1722-1742(1758)
88 smart00015 IQ Short calmodulin 95.3 0.014 2.9E-07 40.5 2.3 21 423-443 3-23 (26)
89 PHA02562 46 endonuclease subun 95.3 3.2 7E-05 51.8 25.2 13 295-307 43-55 (562)
90 PRK04863 mukB cell division pr 95.3 2.7 5.9E-05 57.6 25.4 44 642-685 440-483 (1486)
91 COG3883 Uncharacterized protei 95.2 5.8 0.00012 43.7 23.1 34 610-643 149-182 (265)
92 PF10473 CENP-F_leu_zip: Leuci 95.0 2.3 5.1E-05 42.3 17.9 18 616-633 80-97 (140)
93 PRK03918 chromosome segregatio 94.9 6.7 0.00015 51.9 27.9 15 1081-1095 824-838 (880)
94 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.9 1.5 3.3E-05 43.5 16.6 31 657-687 97-127 (132)
95 KOG0018 Structural maintenance 94.9 14 0.0003 47.7 27.9 33 1114-1149 1074-1107(1141)
96 TIGR00606 rad50 rad50. This fa 94.9 8 0.00017 53.4 28.9 24 521-544 843-866 (1311)
97 PF08317 Spc7: Spc7 kinetochor 94.8 3.6 7.9E-05 47.5 21.9 13 666-678 277-289 (325)
98 PF06785 UPF0242: Uncharacteri 94.8 7.4 0.00016 43.4 22.3 79 608-686 133-222 (401)
99 PF10473 CENP-F_leu_zip: Leuci 94.7 5.1 0.00011 40.0 19.4 24 614-637 85-108 (140)
100 COG4372 Uncharacterized protei 94.7 9.9 0.00022 43.3 24.5 25 660-684 254-278 (499)
101 PF15619 Lebercilin: Ciliary p 94.7 7.2 0.00016 41.4 23.4 67 612-681 121-187 (194)
102 KOG0995 Centromere-associated 94.6 14 0.00031 44.5 27.9 18 520-537 307-324 (581)
103 KOG0980 Actin-binding protein 94.5 18 0.0004 45.6 29.0 12 1056-1067 933-944 (980)
104 smart00015 IQ Short calmodulin 94.5 0.019 4.1E-07 39.8 1.2 20 375-394 3-22 (26)
105 PF04849 HAP1_N: HAP1 N-termin 94.4 11 0.00023 42.5 23.7 75 612-686 223-304 (306)
106 PF04849 HAP1_N: HAP1 N-termin 94.4 1.6 3.5E-05 48.9 16.6 67 612-678 237-303 (306)
107 TIGR03185 DNA_S_dndD DNA sulfu 94.4 9.4 0.0002 48.6 26.1 31 652-682 436-466 (650)
108 smart00787 Spc7 Spc7 kinetocho 94.3 5.5 0.00012 45.5 21.3 14 673-686 272-285 (312)
109 PF15619 Lebercilin: Ciliary p 94.3 8.5 0.00018 40.9 23.4 30 657-686 156-185 (194)
110 KOG4360 Uncharacterized coiled 94.3 2.6 5.7E-05 49.5 18.4 75 612-686 229-303 (596)
111 PF10174 Cast: RIM-binding pro 94.3 5.3 0.00012 50.9 22.9 40 557-596 333-372 (775)
112 KOG0978 E3 ubiquitin ligase in 94.2 21 0.00045 44.7 33.2 75 612-686 541-615 (698)
113 KOG0978 E3 ubiquitin ligase in 94.1 12 0.00026 46.7 24.8 78 611-688 526-603 (698)
114 KOG0977 Nuclear envelope prote 94.1 12 0.00026 45.5 24.2 147 518-678 53-217 (546)
115 PF10481 CENP-F_N: Cenp-F N-te 94.1 1.3 2.8E-05 48.0 14.4 69 621-689 65-133 (307)
116 KOG1103 Predicted coiled-coil 94.0 5.8 0.00013 44.2 19.6 52 635-686 243-294 (561)
117 KOG1853 LIS1-interacting prote 93.9 11 0.00023 40.5 22.7 71 617-687 106-179 (333)
118 PF13851 GAS: Growth-arrest sp 93.9 11 0.00023 40.4 23.0 74 611-684 95-169 (201)
119 KOG0995 Centromere-associated 93.9 12 0.00025 45.2 23.1 22 519-540 233-254 (581)
120 PF05483 SCP-1: Synaptonemal c 93.8 13 0.00027 45.7 23.3 40 649-688 585-624 (786)
121 PF04091 Sec15: Exocyst comple 93.8 0.45 9.8E-06 54.5 11.4 133 940-1073 176-311 (311)
122 PTZ00014 myosin-A; Provisional 93.8 0.076 1.6E-06 68.0 5.6 38 425-462 779-816 (821)
123 KOG0999 Microtubule-associated 93.8 12 0.00026 44.4 22.4 16 672-687 201-216 (772)
124 KOG0964 Structural maintenance 93.6 12 0.00025 47.7 23.2 74 614-687 423-496 (1200)
125 smart00787 Spc7 Spc7 kinetocho 93.6 17 0.00037 41.6 23.7 49 638-686 212-260 (312)
126 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.5 7.7 0.00017 38.5 18.2 27 649-675 103-129 (132)
127 PF13870 DUF4201: Domain of un 93.4 12 0.00025 39.3 20.7 24 559-582 48-71 (177)
128 PF05667 DUF812: Protein of un 93.3 6.4 0.00014 48.9 20.9 16 188-205 79-94 (594)
129 PF15254 CCDC14: Coiled-coil d 93.3 11 0.00023 46.9 21.9 65 613-677 491-555 (861)
130 KOG0976 Rho/Rac1-interacting s 93.3 28 0.00061 43.3 29.3 30 608-637 378-407 (1265)
131 KOG0963 Transcription factor/C 93.3 12 0.00026 45.6 22.0 28 660-687 237-264 (629)
132 KOG0612 Rho-associated, coiled 93.2 12 0.00025 48.9 22.9 37 182-218 212-253 (1317)
133 COG3883 Uncharacterized protei 93.2 16 0.00035 40.3 22.6 23 522-544 39-61 (265)
134 KOG0249 LAR-interacting protei 93.1 7.3 0.00016 47.7 19.8 20 992-1019 756-775 (916)
135 TIGR01843 type_I_hlyD type I s 93.1 12 0.00027 44.6 23.0 23 664-686 245-267 (423)
136 KOG2991 Splicing regulator [RN 93.1 15 0.00032 39.6 24.8 47 640-686 260-306 (330)
137 PF05701 WEMBL: Weak chloropla 93.0 13 0.00029 45.8 23.2 15 611-625 339-353 (522)
138 KOG0612 Rho-associated, coiled 93.0 40 0.00087 44.3 29.5 72 613-684 620-693 (1317)
139 PF07111 HCR: Alpha helical co 92.9 22 0.00047 44.0 23.6 24 663-686 240-263 (739)
140 PRK04778 septation ring format 92.8 6.4 0.00014 49.2 20.3 66 607-672 346-411 (569)
141 PF04156 IncA: IncA protein; 92.8 6 0.00013 41.9 17.4 13 664-676 171-183 (191)
142 PF10481 CENP-F_N: Cenp-F N-te 92.7 5.4 0.00012 43.4 16.4 71 612-682 63-133 (307)
143 TIGR02680 conserved hypothetic 92.7 16 0.00036 50.4 25.5 17 1000-1016 1119-1135(1353)
144 KOG0982 Centrosomal protein Nu 92.7 8.2 0.00018 44.6 18.5 15 674-688 405-419 (502)
145 KOG1003 Actin filament-coating 92.5 15 0.00033 38.2 22.6 105 571-682 92-196 (205)
146 PF15070 GOLGA2L5: Putative go 92.4 38 0.00082 42.5 30.0 10 1108-1117 594-603 (617)
147 PRK01156 chromosome segregatio 92.2 52 0.0011 43.7 35.8 33 654-686 412-444 (895)
148 PF09789 DUF2353: Uncharacteri 92.1 26 0.00056 40.0 25.2 27 660-686 191-217 (319)
149 PF00038 Filament: Intermediat 91.9 28 0.00061 39.9 33.9 30 523-552 70-99 (312)
150 PF10168 Nup88: Nuclear pore c 91.8 14 0.0003 47.3 21.5 30 612-641 635-664 (717)
151 PRK01156 chromosome segregatio 91.7 21 0.00045 47.4 24.4 21 661-681 698-718 (895)
152 PF04437 RINT1_TIP1: RINT-1 / 91.7 2.6 5.7E-05 51.7 14.9 124 941-1070 353-491 (494)
153 COG4372 Uncharacterized protei 91.6 29 0.00064 39.7 26.7 70 610-679 211-280 (499)
154 KOG2129 Uncharacterized conser 91.6 31 0.00067 39.8 21.8 26 613-638 250-275 (552)
155 KOG4674 Uncharacterized conser 91.5 76 0.0017 44.1 36.0 70 526-595 764-833 (1822)
156 KOG4360 Uncharacterized coiled 91.4 13 0.00028 43.9 18.7 77 610-686 220-296 (596)
157 PF09730 BicD: Microtubule-ass 91.4 39 0.00084 42.9 24.2 47 611-657 99-148 (717)
158 PF09728 Taxilin: Myosin-like 91.3 31 0.00068 39.5 31.7 79 607-685 221-299 (309)
159 PRK10884 SH3 domain-containing 91.3 2.5 5.4E-05 45.2 12.2 76 608-686 92-167 (206)
160 PF13514 AAA_27: AAA domain 91.3 72 0.0016 43.5 31.1 35 560-594 801-835 (1111)
161 PF08614 ATG16: Autophagy prot 91.1 2.7 5.8E-05 44.8 12.3 60 627-686 120-179 (194)
162 PF05667 DUF812: Protein of un 91.1 50 0.0011 41.3 30.7 73 561-633 441-529 (594)
163 PF08614 ATG16: Autophagy prot 91.0 1.8 3.9E-05 46.1 10.9 68 607-674 114-181 (194)
164 COG5185 HEC1 Protein involved 91.0 37 0.00079 39.9 21.3 10 313-322 137-146 (622)
165 KOG4593 Mitotic checkpoint pro 90.8 52 0.0011 40.9 30.0 24 1054-1077 631-661 (716)
166 PF04111 APG6: Autophagy prote 90.7 4.7 0.0001 46.3 14.6 32 655-686 103-134 (314)
167 TIGR02680 conserved hypothetic 90.3 94 0.002 43.2 30.5 21 428-448 725-745 (1353)
168 TIGR01843 type_I_hlyD type I s 90.2 32 0.0007 41.0 22.2 70 614-683 201-271 (423)
169 PRK04778 septation ring format 90.2 59 0.0013 40.7 31.5 21 611-631 319-339 (569)
170 PF05010 TACC: Transforming ac 90.2 29 0.00064 37.1 24.3 36 649-684 159-194 (207)
171 PF14915 CCDC144C: CCDC144C pr 90.0 36 0.00079 38.0 29.9 34 654-687 203-236 (305)
172 KOG0979 Structural maintenance 90.0 64 0.0014 41.8 24.1 28 944-971 836-864 (1072)
173 KOG4674 Uncharacterized conser 89.8 1E+02 0.0022 42.9 31.5 45 643-687 843-887 (1822)
174 TIGR01005 eps_transp_fam exopo 89.7 27 0.00058 45.5 22.2 21 610-630 289-309 (754)
175 PF09304 Cortex-I_coil: Cortex 89.7 5.4 0.00012 37.4 11.2 62 621-682 14-75 (107)
176 PF10168 Nup88: Nuclear pore c 89.7 33 0.00071 44.0 22.1 22 560-581 639-660 (717)
177 KOG4593 Mitotic checkpoint pro 89.6 63 0.0014 40.2 27.1 24 469-492 84-107 (716)
178 PF04156 IncA: IncA protein; 89.5 15 0.00032 38.8 16.4 11 566-576 101-111 (191)
179 KOG0964 Structural maintenance 89.4 30 0.00066 44.2 20.5 17 1056-1072 945-961 (1200)
180 COG4026 Uncharacterized protei 89.3 3.4 7.3E-05 43.4 10.5 42 610-651 143-184 (290)
181 PF14197 Cep57_CLD_2: Centroso 89.2 4 8.7E-05 35.6 9.5 61 613-673 2-62 (69)
182 KOG1899 LAR transmembrane tyro 89.2 10 0.00022 45.7 15.6 22 998-1019 707-728 (861)
183 PF04111 APG6: Autophagy prote 89.1 4.9 0.00011 46.1 13.0 74 612-685 46-119 (314)
184 PRK10884 SH3 domain-containing 88.9 4 8.6E-05 43.7 11.3 72 613-687 90-161 (206)
185 KOG0804 Cytoplasmic Zn-finger 88.9 26 0.00056 41.1 18.2 14 663-676 433-446 (493)
186 COG4026 Uncharacterized protei 88.8 3.2 7E-05 43.5 10.0 55 613-667 153-207 (290)
187 KOG0946 ER-Golgi vesicle-tethe 88.7 45 0.00098 41.9 21.0 25 608-632 736-760 (970)
188 KOG0979 Structural maintenance 88.7 47 0.001 42.9 21.7 6 1106-1111 1021-1026(1072)
189 KOG0946 ER-Golgi vesicle-tethe 88.5 77 0.0017 40.0 22.7 32 655-686 852-883 (970)
190 COG1340 Uncharacterized archae 88.3 49 0.0011 37.2 24.1 23 611-633 160-182 (294)
191 PLN02939 transferase, transfer 88.3 50 0.0011 43.3 22.2 29 655-683 373-401 (977)
192 PLN03188 kinesin-12 family pro 88.2 1.1E+02 0.0023 41.0 29.1 41 646-686 1199-1239(1320)
193 KOG4673 Transcription factor T 88.1 76 0.0017 39.1 29.9 22 663-684 610-631 (961)
194 TIGR03185 DNA_S_dndD DNA sulfu 87.8 65 0.0014 41.1 23.3 41 646-686 423-463 (650)
195 PRK11281 hypothetical protein; 87.7 16 0.00035 48.8 18.0 26 608-633 191-216 (1113)
196 PF08826 DMPK_coil: DMPK coile 87.6 8.4 0.00018 32.7 10.0 37 642-678 23-59 (61)
197 TIGR03007 pepcterm_ChnLen poly 87.5 48 0.001 40.7 21.5 17 567-583 204-220 (498)
198 COG2433 Uncharacterized conser 87.5 6.1 0.00013 47.8 12.6 77 610-686 430-509 (652)
199 PF14197 Cep57_CLD_2: Centroso 87.3 8.7 0.00019 33.5 10.3 66 620-685 2-67 (69)
200 PF00038 Filament: Intermediat 87.3 60 0.0013 37.1 32.2 72 612-683 212-287 (312)
201 PRK10698 phage shock protein P 87.0 50 0.0011 35.9 23.0 75 609-683 99-184 (222)
202 KOG0804 Cytoplasmic Zn-finger 87.0 21 0.00046 41.7 16.0 23 662-684 425-447 (493)
203 PF10146 zf-C4H2: Zinc finger- 86.9 33 0.00071 37.5 17.0 46 646-691 62-107 (230)
204 PF01576 Myosin_tail_1: Myosin 86.8 0.2 4.3E-06 65.2 0.0 74 612-685 148-221 (859)
205 PF09789 DUF2353: Uncharacteri 86.7 41 0.00088 38.4 18.0 44 645-688 127-170 (319)
206 PF09730 BicD: Microtubule-ass 86.2 69 0.0015 40.7 21.4 30 608-637 358-387 (717)
207 PF01576 Myosin_tail_1: Myosin 86.2 0.22 4.8E-06 64.7 0.0 75 610-684 427-501 (859)
208 PRK10929 putative mechanosensi 85.8 79 0.0017 42.5 22.6 22 665-686 265-286 (1109)
209 PF10205 KLRAQ: Predicted coil 85.5 14 0.0003 34.6 11.2 73 613-685 2-74 (102)
210 PF10186 Atg14: UV radiation r 85.4 54 0.0012 37.1 19.1 25 661-685 122-146 (302)
211 PF09755 DUF2046: Uncharacteri 85.3 72 0.0016 36.1 25.4 44 637-686 156-199 (310)
212 PF00769 ERM: Ezrin/radixin/mo 85.1 13 0.00028 41.2 13.1 67 618-684 49-115 (246)
213 PF10186 Atg14: UV radiation r 85.1 45 0.00098 37.7 18.3 11 946-956 286-296 (302)
214 PRK10361 DNA recombination pro 85.0 98 0.0021 37.4 24.6 16 789-804 277-292 (475)
215 KOG1937 Uncharacterized conser 84.9 89 0.0019 36.8 21.0 25 662-686 393-417 (521)
216 KOG0249 LAR-interacting protei 84.7 52 0.0011 40.8 18.3 10 531-540 142-151 (916)
217 KOG1962 B-cell receptor-associ 84.7 6.7 0.00014 41.9 10.0 60 614-687 149-208 (216)
218 COG3074 Uncharacterized protei 84.3 9.7 0.00021 32.5 8.6 35 652-686 26-60 (79)
219 COG2433 Uncharacterized conser 84.0 17 0.00037 44.2 14.0 16 131-147 59-74 (652)
220 KOG0243 Kinesin-like protein [ 83.7 45 0.00098 43.5 18.4 39 248-286 164-218 (1041)
221 COG4942 Membrane-bound metallo 83.5 1E+02 0.0022 36.5 29.4 63 619-681 185-247 (420)
222 KOG0999 Microtubule-associated 83.3 1.1E+02 0.0025 36.8 26.0 15 1063-1077 690-704 (772)
223 KOG2129 Uncharacterized conser 83.3 97 0.0021 36.0 20.9 29 607-635 251-279 (552)
224 KOG1937 Uncharacterized conser 83.2 1E+02 0.0022 36.3 22.9 82 516-597 288-375 (521)
225 PF07889 DUF1664: Protein of u 83.2 24 0.00053 34.6 12.4 67 612-678 57-123 (126)
226 KOG4403 Cell surface glycoprot 83.1 1E+02 0.0022 36.0 20.9 23 561-583 303-325 (575)
227 PF10174 Cast: RIM-binding pro 83.0 1.6E+02 0.0034 38.2 30.9 15 246-260 152-166 (775)
228 PF10212 TTKRSYEDQ: Predicted 83.0 1.2E+02 0.0026 36.8 20.4 20 241-260 166-185 (518)
229 COG1382 GimC Prefoldin, chaper 83.0 33 0.00071 33.3 12.9 74 611-684 22-110 (119)
230 TIGR00634 recN DNA repair prot 82.9 1E+02 0.0022 38.7 21.3 29 658-686 346-374 (563)
231 PF11559 ADIP: Afadin- and alp 82.8 22 0.00047 36.2 12.8 8 677-684 138-145 (151)
232 PRK11281 hypothetical protein; 82.7 44 0.00095 44.9 18.5 23 614-636 126-148 (1113)
233 PF13851 GAS: Growth-arrest sp 82.7 73 0.0016 34.1 20.8 75 611-685 88-163 (201)
234 KOG4809 Rab6 GTPase-interactin 82.6 87 0.0019 37.8 18.5 21 561-581 332-352 (654)
235 PRK10929 putative mechanosensi 82.5 1.6E+02 0.0034 39.8 23.2 27 607-633 171-197 (1109)
236 PRK00106 hypothetical protein; 82.4 1.1E+02 0.0023 37.9 20.3 6 820-825 379-384 (535)
237 PF15066 CAGE1: Cancer-associa 82.2 1.2E+02 0.0025 36.1 24.2 6 655-660 496-501 (527)
238 PF09738 DUF2051: Double stran 82.0 30 0.00065 39.3 14.5 70 612-681 101-170 (302)
239 KOG0963 Transcription factor/C 82.0 1.4E+02 0.003 36.9 30.4 26 522-547 190-215 (629)
240 PF10498 IFT57: Intra-flagella 81.7 74 0.0016 37.3 18.0 14 570-583 237-250 (359)
241 TIGR03007 pepcterm_ChnLen poly 81.6 1.4E+02 0.003 36.7 25.1 28 656-683 353-380 (498)
242 PF09728 Taxilin: Myosin-like 81.5 1.1E+02 0.0023 35.2 24.7 30 657-686 236-265 (309)
243 PF05911 DUF869: Plant protein 81.1 1.8E+02 0.0039 37.6 24.8 79 608-686 119-204 (769)
244 PF12777 MT: Microtubule-bindi 81.0 1.2E+02 0.0026 35.4 20.3 19 514-532 8-26 (344)
245 PF10146 zf-C4H2: Zinc finger- 80.9 69 0.0015 35.0 16.3 61 613-680 43-103 (230)
246 PF11559 ADIP: Afadin- and alp 80.9 28 0.00061 35.3 12.8 27 613-639 63-89 (151)
247 KOG3684 Ca2+-activated K+ chan 80.6 63 0.0014 38.3 16.5 39 453-491 346-384 (489)
248 KOG1899 LAR transmembrane tyro 80.2 1.5E+02 0.0033 36.3 19.7 24 889-912 552-576 (861)
249 PF13870 DUF4201: Domain of un 80.1 81 0.0017 32.9 18.9 37 650-686 97-133 (177)
250 COG0497 RecN ATPase involved i 79.5 1.7E+02 0.0036 36.2 21.3 31 657-687 341-371 (557)
251 PF09304 Cortex-I_coil: Cortex 79.5 57 0.0012 30.9 16.1 18 528-545 9-26 (107)
252 PF03962 Mnd1: Mnd1 family; I 78.9 18 0.00038 38.3 10.8 75 611-686 71-149 (188)
253 PF15290 Syntaphilin: Golgi-lo 78.8 71 0.0015 35.3 15.1 26 611-636 119-144 (305)
254 KOG4302 Microtubule-associated 78.4 1.3E+02 0.0028 37.8 19.4 79 519-597 59-140 (660)
255 TIGR02977 phageshock_pspA phag 78.3 1.1E+02 0.0023 33.3 24.0 76 608-683 98-184 (219)
256 PF05701 WEMBL: Weak chloropla 78.3 1.8E+02 0.004 36.0 29.9 12 620-631 341-352 (522)
257 PLN02939 transferase, transfer 78.2 2.4E+02 0.0052 37.3 22.3 27 1064-1092 852-879 (977)
258 PF08826 DMPK_coil: DMPK coile 77.7 36 0.00078 29.0 10.0 33 653-685 27-59 (61)
259 PF15456 Uds1: Up-regulated Du 77.6 35 0.00076 33.5 11.5 80 607-687 20-110 (124)
260 KOG0243 Kinesin-like protein [ 77.5 1.5E+02 0.0033 38.9 20.1 29 297-325 173-203 (1041)
261 PF13514 AAA_27: AAA domain 77.4 2.9E+02 0.0063 37.8 26.4 23 294-317 11-33 (1111)
262 PF05622 HOOK: HOOK protein; 77.2 0.76 1.6E-05 59.0 0.0 11 563-573 294-304 (713)
263 PF11932 DUF3450: Protein of u 77.1 30 0.00064 38.4 12.6 72 610-681 43-114 (251)
264 PF05911 DUF869: Plant protein 77.1 2.3E+02 0.005 36.6 31.6 25 609-633 141-165 (769)
265 PF10211 Ax_dynein_light: Axon 76.7 94 0.002 32.9 15.5 27 520-546 126-152 (189)
266 PRK15422 septal ring assembly 76.4 39 0.00084 30.1 10.1 8 622-629 24-31 (79)
267 COG0419 SbcC ATPase involved i 76.0 2.8E+02 0.0061 37.0 26.7 38 947-984 740-777 (908)
268 PF10211 Ax_dynein_light: Axon 75.9 1.1E+02 0.0023 32.5 15.6 14 498-511 75-88 (189)
269 PF07106 TBPIP: Tat binding pr 75.7 12 0.00026 38.8 8.5 67 608-686 71-137 (169)
270 PF04012 PspA_IM30: PspA/IM30 75.5 1.2E+02 0.0027 32.7 21.9 74 611-684 100-184 (221)
271 PF03148 Tektin: Tektin family 75.4 1.8E+02 0.0039 34.5 25.1 156 514-686 137-352 (384)
272 PRK04406 hypothetical protein; 75.3 21 0.00045 31.7 8.5 11 666-676 40-50 (75)
273 KOG2991 Splicing regulator [RN 75.3 1.3E+02 0.0028 32.8 22.0 79 609-687 217-300 (330)
274 COG5185 HEC1 Protein involved 75.2 1.8E+02 0.004 34.5 27.7 20 489-508 303-322 (622)
275 PF07106 TBPIP: Tat binding pr 75.0 13 0.00028 38.5 8.5 26 611-636 81-106 (169)
276 KOG2891 Surface glycoprotein [ 74.5 1.4E+02 0.003 32.7 18.3 28 293-320 107-138 (445)
277 COG1382 GimC Prefoldin, chaper 74.5 48 0.001 32.2 11.2 14 567-580 13-26 (119)
278 COG4477 EzrA Negative regulato 74.2 2.1E+02 0.0046 34.7 24.2 65 608-672 346-410 (570)
279 PF03962 Mnd1: Mnd1 family; I 74.1 80 0.0017 33.4 14.1 26 522-547 70-95 (188)
280 PF10226 DUF2216: Uncharacteri 73.9 1.2E+02 0.0026 31.7 16.1 80 611-690 57-140 (195)
281 cd00632 Prefoldin_beta Prefold 73.7 69 0.0015 30.3 12.4 33 652-684 71-103 (105)
282 PTZ00121 MAEBL; Provisional 73.6 3.5E+02 0.0075 37.0 32.6 7 266-272 826-832 (2084)
283 PF15397 DUF4618: Domain of un 73.6 1.5E+02 0.0033 32.8 27.4 26 661-686 189-214 (258)
284 TIGR01000 bacteriocin_acc bact 73.6 2.2E+02 0.0047 34.6 23.2 25 662-686 288-312 (457)
285 KOG4603 TBP-1 interacting prot 73.5 28 0.00061 35.3 9.7 65 609-685 79-143 (201)
286 PF13863 DUF4200: Domain of un 73.4 94 0.002 30.3 17.2 34 653-686 76-109 (126)
287 KOG4807 F-actin binding protei 73.4 1.8E+02 0.0039 33.5 19.7 25 661-685 515-539 (593)
288 PF14915 CCDC144C: CCDC144C pr 73.1 1.7E+02 0.0036 33.0 24.7 111 563-680 182-293 (305)
289 PF15254 CCDC14: Coiled-coil d 72.2 2.8E+02 0.0061 35.2 26.8 55 525-579 391-446 (861)
290 PF15450 DUF4631: Domain of un 72.2 2.3E+02 0.0051 34.3 27.5 25 609-633 351-375 (531)
291 PF06785 UPF0242: Uncharacteri 71.6 1.9E+02 0.004 32.9 22.2 9 812-820 340-348 (401)
292 COG3074 Uncharacterized protei 71.5 63 0.0014 27.8 9.8 7 618-624 34-40 (79)
293 KOG0018 Structural maintenance 71.5 3.4E+02 0.0073 35.9 32.1 26 661-686 447-472 (1141)
294 PF08172 CASP_C: CASP C termin 71.2 38 0.00083 37.4 11.3 42 645-686 87-128 (248)
295 KOG4364 Chromatin assembly fac 71.1 2.4E+02 0.0052 35.1 18.2 10 1066-1075 742-751 (811)
296 PF10267 Tmemb_cc2: Predicted 70.9 1.3E+02 0.0027 35.7 15.9 18 661-678 301-318 (395)
297 PRK10869 recombination and rep 70.8 2.8E+02 0.0061 34.6 20.8 31 657-687 340-370 (553)
298 PF01486 K-box: K-box region; 70.3 57 0.0012 30.6 10.8 79 607-687 10-97 (100)
299 PRK02119 hypothetical protein; 69.7 28 0.0006 30.8 7.9 14 664-677 36-49 (73)
300 KOG2685 Cystoskeletal protein 69.7 2.3E+02 0.0051 33.3 22.4 36 503-542 84-119 (421)
301 KOG0288 WD40 repeat protein Ti 69.6 2.3E+02 0.005 33.2 17.1 15 812-826 243-257 (459)
302 PF02403 Seryl_tRNA_N: Seryl-t 69.6 24 0.00052 33.6 8.3 73 608-684 28-100 (108)
303 TIGR01000 bacteriocin_acc bact 69.5 2.7E+02 0.0058 33.9 25.0 29 655-683 288-316 (457)
304 PRK04406 hypothetical protein; 69.3 35 0.00076 30.3 8.5 22 663-684 30-51 (75)
305 PF11932 DUF3450: Protein of u 69.3 1.9E+02 0.0041 32.1 16.9 26 616-641 70-95 (251)
306 KOG4001 Axonemal dynein light 69.2 55 0.0012 34.2 10.9 59 519-577 190-252 (259)
307 KOG2751 Beclin-like protein [S 68.8 2.2E+02 0.0049 33.6 16.9 26 661-686 242-267 (447)
308 PF05266 DUF724: Protein of un 68.8 52 0.0011 34.9 11.2 20 665-684 159-178 (190)
309 KOG1962 B-cell receptor-associ 68.7 1.7E+02 0.0038 31.5 23.2 16 477-492 81-96 (216)
310 KOG0239 Kinesin (KAR3 subfamil 68.2 1.3E+02 0.0028 38.4 16.4 20 809-828 480-500 (670)
311 KOG0239 Kinesin (KAR3 subfamil 68.2 2E+02 0.0044 36.6 18.1 6 773-778 420-425 (670)
312 PF14992 TMCO5: TMCO5 family 67.7 1E+02 0.0022 34.5 13.4 7 569-575 65-71 (280)
313 TIGR03752 conj_TIGR03752 integ 67.6 50 0.0011 39.5 11.8 72 610-681 60-139 (472)
314 COG1842 PspA Phage shock prote 67.4 1.9E+02 0.0042 31.5 19.4 7 670-676 171-177 (225)
315 PF14389 Lzipper-MIP1: Leucine 67.4 33 0.00072 31.5 8.2 56 527-582 7-76 (88)
316 PF05266 DUF724: Protein of un 67.4 82 0.0018 33.4 12.4 27 655-681 156-182 (190)
317 KOG0993 Rab5 GTPase effector R 67.1 2.5E+02 0.0055 32.7 17.7 156 531-686 9-183 (542)
318 PF10205 KLRAQ: Predicted coil 66.6 1E+02 0.0022 29.1 11.2 62 614-675 10-71 (102)
319 PF01920 Prefoldin_2: Prefoldi 66.5 88 0.0019 29.3 11.5 29 657-685 68-96 (106)
320 TIGR02338 gimC_beta prefoldin, 66.2 1E+02 0.0022 29.6 11.8 27 655-681 78-104 (110)
321 PF05557 MAD: Mitotic checkpoi 66.1 1.9 4.2E-05 55.4 0.0 21 561-581 306-326 (722)
322 PRK00846 hypothetical protein; 66.1 36 0.00077 30.4 7.8 25 660-684 36-60 (77)
323 PRK02793 phi X174 lysis protei 65.9 37 0.0008 30.0 7.9 19 663-681 34-52 (72)
324 PF05837 CENP-H: Centromere pr 65.8 54 0.0012 31.2 9.7 69 617-686 4-72 (106)
325 PRK13729 conjugal transfer pil 65.5 23 0.00049 42.3 8.5 20 664-683 103-122 (475)
326 PRK04325 hypothetical protein; 65.2 40 0.00087 29.9 8.0 13 665-677 37-49 (74)
327 PF06818 Fez1: Fez1; InterPro 64.9 2E+02 0.0043 30.7 16.9 10 673-682 139-148 (202)
328 PRK09343 prefoldin subunit bet 64.8 1.4E+02 0.0031 29.1 13.1 24 661-684 88-111 (121)
329 PF07798 DUF1640: Protein of u 64.7 1.9E+02 0.004 30.3 15.9 23 611-633 75-97 (177)
330 PRK10246 exonuclease subunit S 64.6 5E+02 0.011 35.3 24.4 22 25-46 36-57 (1047)
331 TIGR02338 gimC_beta prefoldin, 64.5 1.3E+02 0.0029 28.7 12.4 31 656-686 72-102 (110)
332 KOG0288 WD40 repeat protein Ti 64.5 1.2E+02 0.0025 35.6 13.4 20 526-545 4-23 (459)
333 KOG2751 Beclin-like protein [S 64.4 1.6E+02 0.0035 34.7 14.6 9 1006-1014 432-440 (447)
334 PF13166 AAA_13: AAA domain 64.4 4.1E+02 0.0089 34.2 24.0 29 658-686 424-452 (712)
335 PF12329 TMF_DNA_bd: TATA elem 64.4 99 0.0021 27.4 10.3 12 611-622 14-25 (74)
336 TIGR02449 conserved hypothetic 64.2 76 0.0016 27.4 9.1 53 532-595 4-56 (65)
337 PF05384 DegS: Sensor protein 64.1 1.8E+02 0.0039 29.9 21.1 19 560-578 27-45 (159)
338 KOG2264 Exostosin EXT1L [Signa 63.8 53 0.0011 39.4 10.8 59 629-687 92-150 (907)
339 PF05557 MAD: Mitotic checkpoi 63.3 7 0.00015 50.4 4.3 24 662-685 507-530 (722)
340 PF10267 Tmemb_cc2: Predicted 63.2 3.2E+02 0.0069 32.5 17.6 18 615-632 275-292 (395)
341 PRK02119 hypothetical protein; 63.1 45 0.00098 29.5 7.9 22 663-684 28-49 (73)
342 PF01920 Prefoldin_2: Prefoldi 62.8 1.3E+02 0.0029 28.0 12.5 34 649-682 67-100 (106)
343 PRK12704 phosphodiesterase; Pr 62.7 3.8E+02 0.0082 33.2 23.8 10 1030-1039 417-426 (520)
344 PF10234 Cluap1: Clusterin-ass 62.7 2.5E+02 0.0055 31.4 15.4 46 612-657 172-217 (267)
345 PF12240 Angiomotin_C: Angiomo 62.5 2.2E+02 0.0047 30.3 17.5 37 652-688 130-166 (205)
346 PRK00295 hypothetical protein; 62.3 54 0.0012 28.5 8.2 13 665-677 33-45 (68)
347 PF10046 BLOC1_2: Biogenesis o 62.2 1.3E+02 0.0028 28.3 11.4 30 652-681 67-96 (99)
348 KOG0162 Myosin class I heavy c 62.0 11 0.00025 46.2 5.2 28 424-451 697-724 (1106)
349 KOG4427 E3 ubiquitin protein l 61.9 7.7 0.00017 47.7 3.8 23 421-443 28-50 (1096)
350 PF07889 DUF1664: Protein of u 61.8 1.4E+02 0.0029 29.5 11.7 30 653-682 91-120 (126)
351 PF07989 Microtub_assoc: Micro 61.6 67 0.0015 28.6 8.8 26 608-633 6-31 (75)
352 PLN03188 kinesin-12 family pro 61.5 2.5E+02 0.0055 37.8 17.2 16 121-137 233-248 (1320)
353 PRK10361 DNA recombination pro 61.2 3.7E+02 0.0081 32.7 28.8 17 623-639 140-156 (475)
354 PF05700 BCAS2: Breast carcino 60.9 2.5E+02 0.0054 30.5 17.0 73 612-687 139-211 (221)
355 PF04102 SlyX: SlyX; InterPro 60.8 42 0.0009 29.3 7.3 27 660-686 20-46 (69)
356 PF15188 CCDC-167: Coiled-coil 60.5 42 0.00092 30.5 7.3 62 616-688 5-66 (85)
357 PRK00736 hypothetical protein; 60.2 50 0.0011 28.7 7.6 13 665-677 33-45 (68)
358 KOG1103 Predicted coiled-coil 60.1 3E+02 0.0066 31.2 24.0 34 653-686 247-280 (561)
359 KOG4809 Rab6 GTPase-interactin 59.9 4E+02 0.0086 32.5 21.1 20 523-542 333-352 (654)
360 KOG4302 Microtubule-associated 59.8 2.8E+02 0.0062 35.0 16.7 27 659-685 227-253 (660)
361 PF13094 CENP-Q: CENP-Q, a CEN 59.7 64 0.0014 33.1 9.8 36 610-645 21-56 (160)
362 TIGR03752 conj_TIGR03752 integ 59.6 76 0.0016 38.0 11.3 67 610-676 74-141 (472)
363 COG2900 SlyX Uncharacterized p 59.6 60 0.0013 28.4 7.7 32 655-686 26-57 (72)
364 smart00338 BRLZ basic region l 59.4 96 0.0021 26.5 9.3 37 651-687 26-62 (65)
365 PF10498 IFT57: Intra-flagella 59.4 3E+02 0.0065 32.3 16.2 9 502-510 216-224 (359)
366 KOG2077 JNK/SAPK-associated pr 59.4 71 0.0015 38.5 10.8 78 611-688 303-380 (832)
367 PF06008 Laminin_I: Laminin Do 59.3 2.9E+02 0.0063 30.8 22.6 56 614-669 183-238 (264)
368 PF10458 Val_tRNA-synt_C: Valy 59.3 26 0.00057 30.2 5.8 17 659-675 47-63 (66)
369 PF05529 Bap31: B-cell recepto 59.3 70 0.0015 33.9 10.3 25 663-687 159-183 (192)
370 PF07851 TMPIT: TMPIT-like pro 59.0 1.2E+02 0.0026 35.0 12.4 26 972-997 270-295 (330)
371 PRK13729 conjugal transfer pil 59.0 34 0.00073 41.0 8.4 27 661-687 93-119 (475)
372 PF04012 PspA_IM30: PspA/IM30 58.9 2.6E+02 0.0057 30.1 19.8 17 564-580 55-71 (221)
373 PF15294 Leu_zip: Leucine zipp 58.4 2.3E+02 0.005 31.8 14.1 141 521-682 132-277 (278)
374 PF05010 TACC: Transforming ac 58.3 2.7E+02 0.0058 30.0 23.7 25 659-683 162-186 (207)
375 PF01166 TSC22: TSC-22/dip/bun 57.8 15 0.00033 30.5 3.7 30 658-687 14-43 (59)
376 PRK00295 hypothetical protein; 57.7 74 0.0016 27.7 8.2 20 657-676 32-51 (68)
377 PRK15178 Vi polysaccharide exp 57.5 3.8E+02 0.0082 32.3 16.7 10 534-543 229-238 (434)
378 PTZ00121 MAEBL; Provisional 57.4 6.8E+02 0.015 34.5 32.6 10 184-193 777-786 (2084)
379 PRK02793 phi X174 lysis protei 57.2 65 0.0014 28.4 7.9 27 658-684 22-48 (72)
380 TIGR03017 EpsF chain length de 56.8 4.2E+02 0.0091 31.9 23.5 188 495-686 145-356 (444)
381 KOG4005 Transcription factor X 56.8 1.7E+02 0.0036 31.6 12.0 35 507-541 69-103 (292)
382 TIGR01005 eps_transp_fam exopo 56.5 5.7E+02 0.012 33.3 28.7 25 659-683 377-401 (754)
383 KOG4787 Uncharacterized conser 56.5 3.2E+02 0.0069 33.4 15.4 26 661-686 518-543 (852)
384 PF10212 TTKRSYEDQ: Predicted 56.5 2.8E+02 0.0061 33.8 15.4 30 657-686 486-515 (518)
385 PRK04325 hypothetical protein; 56.1 72 0.0016 28.3 8.0 18 657-674 36-53 (74)
386 PF04582 Reo_sigmaC: Reovirus 56.1 23 0.00049 40.3 6.1 76 612-687 80-155 (326)
387 PRK03947 prefoldin subunit alp 55.1 2.3E+02 0.0049 28.2 14.2 19 563-581 16-34 (140)
388 PRK00409 recombination and DNA 55.0 2.1E+02 0.0045 37.4 15.4 14 350-363 367-381 (782)
389 PRK09343 prefoldin subunit bet 54.6 2.2E+02 0.0047 27.9 13.0 29 658-686 78-106 (121)
390 PRK00736 hypothetical protein; 54.6 76 0.0017 27.6 7.8 18 657-674 32-49 (68)
391 PF06428 Sec2p: GDP/GTP exchan 54.5 13 0.00027 35.0 3.2 70 610-686 9-79 (100)
392 TIGR01069 mutS2 MutS2 family p 54.4 2.9E+02 0.0062 36.1 16.5 17 190-206 213-230 (771)
393 TIGR03495 phage_LysB phage lys 54.2 2E+02 0.0044 28.7 11.6 27 660-686 70-96 (135)
394 PF12761 End3: Actin cytoskele 54.1 1.2E+02 0.0027 32.0 10.6 32 655-686 164-195 (195)
395 PF00170 bZIP_1: bZIP transcri 54.0 1.3E+02 0.0028 25.6 9.2 34 653-686 28-61 (64)
396 PF00170 bZIP_1: bZIP transcri 53.6 99 0.0022 26.3 8.4 38 645-682 27-64 (64)
397 PF12777 MT: Microtubule-bindi 53.2 4.3E+02 0.0092 30.8 20.8 32 653-684 237-268 (344)
398 PF04949 Transcrip_act: Transc 52.8 2.6E+02 0.0056 28.1 18.0 13 640-652 122-134 (159)
399 PRK11519 tyrosine kinase; Prov 52.8 4.4E+02 0.0096 34.1 17.9 11 1052-1062 639-649 (719)
400 PF07058 Myosin_HC-like: Myosi 52.3 3.9E+02 0.0085 30.1 16.2 26 611-636 110-135 (351)
401 TIGR00634 recN DNA repair prot 52.2 5.7E+02 0.012 32.0 20.7 25 653-677 348-372 (563)
402 KOG3433 Protein involved in me 51.9 1.5E+02 0.0033 30.7 10.4 31 614-644 79-109 (203)
403 PF14988 DUF4515: Domain of un 51.8 3.4E+02 0.0073 29.2 23.8 31 656-686 168-198 (206)
404 PRK03947 prefoldin subunit alp 51.8 2E+02 0.0044 28.6 11.7 31 654-684 104-134 (140)
405 KOG4603 TBP-1 interacting prot 51.5 1.4E+02 0.0031 30.6 10.0 13 669-681 120-132 (201)
406 TIGR02231 conserved hypothetic 51.5 1.4E+02 0.003 37.1 12.7 30 609-638 71-100 (525)
407 PF10474 DUF2451: Protein of u 51.2 3.3E+02 0.0072 29.9 14.1 47 942-988 91-141 (234)
408 PF06632 XRCC4: DNA double-str 51.1 2.1E+02 0.0046 33.3 13.0 31 610-640 145-175 (342)
409 PF07393 Sec10: Exocyst comple 50.9 3.2E+02 0.0069 35.3 16.2 166 890-1071 530-698 (710)
410 COG2900 SlyX Uncharacterized p 50.8 1.4E+02 0.0029 26.3 8.4 28 652-679 30-57 (72)
411 PF14389 Lzipper-MIP1: Leucine 50.4 49 0.0011 30.4 6.3 28 659-686 55-82 (88)
412 PRK00409 recombination and DNA 50.4 4.8E+02 0.01 34.1 17.6 10 196-205 225-234 (782)
413 PRK05431 seryl-tRNA synthetase 50.3 78 0.0017 38.1 9.8 72 609-684 28-99 (425)
414 PF07989 Microtub_assoc: Micro 50.2 1.8E+02 0.0039 25.9 9.6 26 614-639 5-30 (75)
415 PF07851 TMPIT: TMPIT-like pro 50.1 1.5E+02 0.0032 34.2 11.4 54 610-663 5-58 (330)
416 KOG4427 E3 ubiquitin protein l 50.1 16 0.00035 45.1 3.9 16 400-415 32-47 (1096)
417 TIGR01069 mutS2 MutS2 family p 49.9 2.2E+02 0.0048 37.1 14.4 8 531-538 492-499 (771)
418 PF07798 DUF1640: Protein of u 49.6 3.3E+02 0.0071 28.4 20.0 36 552-587 65-100 (177)
419 COG1730 GIM5 Predicted prefold 49.5 3E+02 0.0064 27.9 12.5 29 657-685 107-135 (145)
420 PRK09841 cryptic autophosphory 49.5 7.1E+02 0.015 32.3 19.8 14 1050-1063 642-655 (726)
421 KOG0240 Kinesin (SMY1 subfamil 49.1 6E+02 0.013 31.3 18.2 142 532-684 338-489 (607)
422 KOG2891 Surface glycoprotein [ 49.1 4E+02 0.0087 29.3 15.8 9 160-168 54-62 (445)
423 KOG0942 E3 ubiquitin protein l 48.6 1.2E+02 0.0027 38.9 11.1 110 458-572 16-125 (1001)
424 COG0419 SbcC ATPase involved i 48.6 8.1E+02 0.018 32.7 30.4 31 654-684 413-443 (908)
425 PF04899 MbeD_MobD: MbeD/MobD 48.6 1.9E+02 0.0041 25.4 10.3 39 645-683 29-67 (70)
426 PF10234 Cluap1: Clusterin-ass 48.4 4.4E+02 0.0095 29.6 15.0 13 304-316 3-15 (267)
427 PF06632 XRCC4: DNA double-str 48.4 1.8E+02 0.0039 33.8 11.9 18 665-682 194-211 (342)
428 PF06156 DUF972: Protein of un 48.4 85 0.0018 30.0 7.7 33 654-686 18-50 (107)
429 PLN02678 seryl-tRNA synthetase 48.3 90 0.0019 37.7 9.8 72 609-684 33-104 (448)
430 PRK00846 hypothetical protein; 48.2 1.6E+02 0.0035 26.4 8.8 36 651-686 20-55 (77)
431 PF11180 DUF2968: Protein of u 48.1 3.6E+02 0.0078 28.5 13.3 33 655-687 151-183 (192)
432 COG0497 RecN ATPase involved i 47.7 6.5E+02 0.014 31.3 21.7 8 351-358 99-106 (557)
433 PF10224 DUF2205: Predicted co 47.4 90 0.002 28.2 7.2 39 648-686 20-58 (80)
434 KOG3759 Uncharacterized RUN do 47.2 5.6E+02 0.012 30.5 15.4 33 649-681 218-250 (621)
435 PF15188 CCDC-167: Coiled-coil 47.2 76 0.0016 28.9 6.8 25 610-634 6-30 (85)
436 PF13747 DUF4164: Domain of un 46.6 2.4E+02 0.0052 26.0 12.1 35 609-643 39-73 (89)
437 PF03961 DUF342: Protein of un 46.5 1E+02 0.0022 37.4 10.2 32 653-684 377-408 (451)
438 COG4717 Uncharacterized conser 45.9 8E+02 0.017 31.9 29.5 23 436-458 553-575 (984)
439 PRK13169 DNA replication intia 45.7 99 0.0021 29.7 7.7 35 652-686 16-50 (110)
440 PF08172 CASP_C: CASP C termin 45.5 2.5E+02 0.0054 31.2 12.0 27 659-685 108-134 (248)
441 PF04880 NUDE_C: NUDE protein, 45.2 34 0.00073 35.3 4.8 22 660-681 26-47 (166)
442 PF10046 BLOC1_2: Biogenesis o 45.1 2.6E+02 0.0057 26.2 10.5 23 652-674 74-96 (99)
443 PF05377 FlaC_arch: Flagella a 45.0 93 0.002 25.9 6.3 28 612-639 3-30 (55)
444 PF09403 FadA: Adhesion protei 45.0 3.2E+02 0.0069 27.0 15.2 16 662-677 104-119 (126)
445 smart00502 BBC B-Box C-termina 44.8 2.8E+02 0.0061 26.3 15.9 22 612-633 75-96 (127)
446 TIGR02231 conserved hypothetic 44.3 1.9E+02 0.0041 35.9 12.3 33 653-685 140-172 (525)
447 PF06160 EzrA: Septation ring 44.2 7.4E+02 0.016 31.0 33.0 262 426-687 7-359 (560)
448 PF12795 MscS_porin: Mechanose 44.1 4.7E+02 0.01 28.7 21.1 26 608-633 149-174 (240)
449 PF09738 DUF2051: Double stran 43.8 3.4E+02 0.0073 31.0 12.9 48 634-681 116-163 (302)
450 KOG2391 Vacuolar sorting prote 43.7 1.4E+02 0.0031 34.0 9.6 21 250-270 126-146 (365)
451 COG1842 PspA Phage shock prote 42.8 4.8E+02 0.01 28.5 21.8 28 516-543 40-67 (225)
452 KOG4364 Chromatin assembly fac 42.8 7.8E+02 0.017 30.9 17.3 12 968-979 652-663 (811)
453 PF06548 Kinesin-related: Kine 42.7 6.6E+02 0.014 30.0 22.3 41 646-686 429-469 (488)
454 KOG4657 Uncharacterized conser 42.6 3.7E+02 0.0081 29.0 11.9 77 610-686 52-128 (246)
455 PHA02414 hypothetical protein 42.4 2.3E+02 0.005 26.2 8.9 24 658-681 57-80 (111)
456 PF04899 MbeD_MobD: MbeD/MobD 42.3 2.4E+02 0.0052 24.8 9.5 40 638-677 29-68 (70)
457 PF05262 Borrelia_P83: Borreli 42.0 7.4E+02 0.016 30.4 19.9 7 352-358 152-158 (489)
458 PRK11519 tyrosine kinase; Prov 41.6 9.1E+02 0.02 31.3 20.4 14 661-674 373-386 (719)
459 KOG4403 Cell surface glycoprot 41.5 6.7E+02 0.014 29.7 18.8 16 533-548 257-272 (575)
460 PF08647 BRE1: BRE1 E3 ubiquit 41.2 3E+02 0.0066 25.6 13.0 96 565-674 1-96 (96)
461 KOG2685 Cystoskeletal protein 41.1 6.8E+02 0.015 29.7 19.9 28 613-640 348-375 (421)
462 PF07058 Myosin_HC-like: Myosi 41.0 2.6E+02 0.0055 31.5 10.8 30 657-686 58-87 (351)
463 PRK11546 zraP zinc resistance 40.8 1.5E+02 0.0033 29.9 8.4 30 655-684 86-115 (143)
464 KOG2077 JNK/SAPK-associated pr 40.7 7.7E+02 0.017 30.2 15.4 58 524-585 318-375 (832)
465 PF05769 DUF837: Protein of un 40.2 4.7E+02 0.01 27.6 21.8 84 510-593 13-103 (181)
466 PF05335 DUF745: Protein of un 40.2 4.8E+02 0.01 27.7 17.6 107 566-686 66-172 (188)
467 PF05700 BCAS2: Breast carcino 40.1 5.2E+02 0.011 28.0 17.2 17 657-673 195-211 (221)
468 PF14073 Cep57_CLD: Centrosome 40.0 4.6E+02 0.01 27.4 20.3 156 495-661 4-172 (178)
469 PF06008 Laminin_I: Laminin Do 39.8 5.7E+02 0.012 28.4 25.3 50 632-681 187-236 (264)
470 KOG0165 Microtubule-associated 39.7 51 0.0011 41.1 5.9 144 375-518 528-673 (1023)
471 KOG3433 Protein involved in me 39.2 3.1E+02 0.0068 28.6 10.4 71 615-685 73-143 (203)
472 PF06046 Sec6: Exocyst complex 39.0 3.6E+02 0.0077 33.7 13.8 163 890-1071 360-528 (566)
473 PRK10636 putative ABC transpor 38.9 1.9E+02 0.0041 36.8 11.4 84 608-691 548-638 (638)
474 PF12004 DUF3498: Domain of un 38.7 10 0.00022 45.8 0.0 122 510-631 365-494 (495)
475 PF13747 DUF4164: Domain of un 38.6 3.2E+02 0.0069 25.2 11.0 70 613-682 5-84 (89)
476 PF06818 Fez1: Fez1; InterPro 38.6 5.2E+02 0.011 27.6 19.4 157 515-682 18-201 (202)
477 PRK09841 cryptic autophosphory 38.5 1E+03 0.022 30.9 21.5 152 495-671 241-397 (726)
478 KOG0942 E3 ubiquitin protein l 38.5 56 0.0012 41.8 6.1 50 471-520 6-55 (1001)
479 PF15035 Rootletin: Ciliary ro 38.4 5E+02 0.011 27.4 17.9 139 514-683 9-166 (182)
480 KOG4196 bZIP transcription fac 38.3 3.9E+02 0.0085 26.3 10.3 67 503-580 49-115 (135)
481 TIGR02894 DNA_bind_RsfA transc 38.3 2.2E+02 0.0048 29.1 9.2 57 611-667 99-155 (161)
482 PF05335 DUF745: Protein of un 38.2 5.1E+02 0.011 27.4 17.8 108 558-679 65-172 (188)
483 PF10458 Val_tRNA-synt_C: Valy 38.2 97 0.0021 26.7 5.9 59 627-685 1-66 (66)
484 KOG3990 Uncharacterized conser 37.6 1.4E+02 0.0031 32.4 8.0 68 618-686 227-295 (305)
485 KOG1760 Molecular chaperone Pr 37.4 4E+02 0.0087 26.0 10.3 77 610-686 24-116 (131)
486 KOG2010 Double stranded RNA bi 37.3 3.4E+02 0.0074 30.8 11.1 86 535-648 119-207 (405)
487 PF06103 DUF948: Bacterial pro 37.2 3.2E+02 0.007 24.9 10.7 69 611-679 21-89 (90)
488 KOG4005 Transcription factor X 37.2 4.8E+02 0.01 28.3 11.7 81 607-687 67-147 (292)
489 PF03338 Pox_J1: Poxvirus J1 p 37.1 45 0.00098 33.0 4.0 71 206-276 63-135 (145)
490 KOG0377 Protein serine/threoni 36.9 32 0.0007 40.1 3.5 27 424-450 18-44 (631)
491 PF09731 Mitofilin: Mitochondr 36.9 9.4E+02 0.02 30.1 24.4 150 523-686 253-406 (582)
492 KOG0962 DNA repair protein RAD 36.4 1.3E+03 0.028 31.7 29.5 219 447-684 819-1053(1294)
493 KOG2264 Exostosin EXT1L [Signa 36.2 2.3E+02 0.005 34.4 10.2 71 611-681 81-151 (907)
494 PF08581 Tup_N: Tup N-terminal 35.8 3.3E+02 0.0072 24.5 12.1 72 613-687 1-72 (79)
495 TIGR00414 serS seryl-tRNA synt 35.8 2.2E+02 0.0047 34.2 10.5 69 609-677 30-102 (418)
496 PF04880 NUDE_C: NUDE protein, 35.7 55 0.0012 33.8 4.6 46 537-583 2-47 (166)
497 PRK13169 DNA replication intia 35.5 2.1E+02 0.0046 27.5 8.2 55 626-680 4-58 (110)
498 PF10226 DUF2216: Uncharacteri 35.3 2.3E+02 0.0049 29.8 8.8 58 628-685 14-75 (195)
499 KOG2010 Double stranded RNA bi 35.3 1.5E+02 0.0033 33.3 8.1 73 611-683 135-207 (405)
500 PF13863 DUF4200: Domain of un 35.2 4.2E+02 0.0092 25.6 16.2 103 568-687 1-103 (126)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.1e-137 Score=1259.75 Aligned_cols=1015 Identities=31% Similarity=0.441 Sum_probs=744.7
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
|||++.|.+||++|.|.++||.|.+|+|..||..+||||||+||++||+|||++||.+|+.++...+|||||||||||+|
T Consensus 362 gId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiF 441 (1463)
T COG5022 362 GIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIF 441 (1463)
T ss_pred CCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999887777899999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CCcchhHhhHhhhcCCCCChHH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFPRSTHET 159 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p~~td~~ 159 (1151)
+.|||||||||||||||||+||+|||++|||||.+|||+|++|+|.|||+||||||+ .|.|||++|||||++|.|||++
T Consensus 442 EkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s 521 (1463)
T COG5022 442 EKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDES 521 (1463)
T ss_pred ccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchH
Confidence 999999999999999999999999999999999999999999999999999999998 2459999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhhccC
Q 001117 160 FAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSK 237 (1151)
Q Consensus 160 ~~~kl~~~~~--~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~ 237 (1151)
|.+||++.+. +++.|.+||++...|+|+||||+|+|+++||++||+|++++++++|+.+|+|+||+.||++... ..+
T Consensus 522 ~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~-~~~ 600 (1463)
T COG5022 522 FTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEEN-IES 600 (1463)
T ss_pred HHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhh-ccc
Confidence 9999999986 5689999999999999999999999999999999999999999999999999999999995433 334
Q ss_pred CCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHH
Q 001117 238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1151)
Q Consensus 238 ~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ 317 (1151)
+++++|+|+.||.||.+||++|++|+||||||||||..|+|+.||+.+|++|||||||+|+|||+|+|||+||+|+||+.
T Consensus 601 K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~ 680 (1463)
T COG5022 601 KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQ 680 (1463)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCC-C----CccHHHHHHHHHhhcCCC--CcccccceeeeecccccchhhhhhhccchhHHHHHHHHhhhcc
Q 001117 318 RFGILASKVLD-G----SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLS 390 (1151)
Q Consensus 318 ry~~l~~~~~~-~----~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R~~~l~~aa~~IQ~~~R~~l~ 390 (1151)
||++|.|.... + ..|.+.+|..||..+.+| .||+|+||||||+|+++.||.+|...++.+++.||++|||++.
T Consensus 681 RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~ 760 (1463)
T COG5022 681 RYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYL 760 (1463)
T ss_pred HHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997432 1 246899999999998776 6999999999999999999999999999999999999999999
Q ss_pred chhhhchhhhhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHH
Q 001117 391 RKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQ-TGMRGMAARNELRFRR 469 (1151)
Q Consensus 391 Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~i~iQ-s~~Rg~~aR~~~~~~r 469 (1151)
|++|.+....+..+|...+|++.+++...--...+++.+|..||....|+.|...-..+..+| ..++....+.......
T Consensus 761 rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~ 840 (1463)
T COG5022 761 RRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF 840 (1463)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999877766667899999999999999999999999999999 7777777777666777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 470 QTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKR 549 (1151)
Q Consensus 470 ~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~rl~~e~~ 549 (1151)
..++++.+|+.||.+..+++|..+.+.++.+|+.+|...|++++..++.+.+++..+.....+|+.++.++...+.....
T Consensus 841 ~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~ 920 (1463)
T COG5022 841 SLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLI 920 (1463)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhh
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999876653111
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccch---hHHHHHHHHHHHHHHHHHHH
Q 001117 550 MRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI---DHAVVEELTSENEKLKTLVS 626 (1151)
Q Consensus 550 ~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~---e~~~~~~L~~e~~kLe~~l~ 626 (1151)
.+..+ +.+..+.|++-+...+. ++.+.. ....+..|.....+|++...
T Consensus 921 ~~~~~---k~e~~a~lk~~l~~~d~--------------------------~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 971 (1463)
T COG5022 921 ENLEF---KTELIARLKKLLNNIDL--------------------------EEGPSIEYVKLPELNKLHEVESKLKETSE 971 (1463)
T ss_pred hhhHH---HHHHHHHHHHHhhcccc--------------------------cchhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 11110 00111222221111000 000000 01133344444444444433
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccccCcccccccccCc
Q 001117 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE---NQILRQQSLLSTPIKKMSEHISA 703 (1151)
Q Consensus 627 ~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E---~~~lrqq~l~~s~~~~~~~~~~~ 703 (1151)
+....+...+....+......++. ...+.+..+..+...+++....++.. +..+....-..+ .....++.
T Consensus 972 ~~~~~~k~~~~~~~~~~~~~~el~----~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~---s~~~~~~~ 1044 (1463)
T COG5022 972 EYEDLLKKSTILVREGNKANSELK----NFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIIS---SESTELSI 1044 (1463)
T ss_pred HHHHHHHHhhHHHHhcccHHHHHH----HHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhc---cchhhhhc
Confidence 333222222222222222211111 11111111111111122221222211 222211000000 00000000
Q ss_pred ccc-ccccC-CCcccccccCCCCCCCCCCCCCchhHhhhhhhhhhhhcHHHHHHhcc-ccCCcc-CCCcchHHHH-HHHH
Q 001117 704 PAT-QSLEN-GHHVIEENISNSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVA-KNLGYC-NGKPVAAFTI-YKCL 778 (1151)
Q Consensus 704 ~~~-~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~~~~l~~~i~-~~~~~~-~~~P~~A~il-~~cl 778 (1151)
... ....+ ..+...... +.......+.+. . ..-....+..+....+++.+. .++... ...+.||..+ +...
T Consensus 1045 ~~~~~~~~~~~~~~~~~l~-~~~~~l~~~r~~-~--~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 1120 (1463)
T COG5022 1045 LKPLQKLKGLLLLENNQLQ-ARYKALKLRREN-S--LLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVA 1120 (1463)
T ss_pred cCcccchhhhhhHHHHHhh-hhHhhhhhcCcc-c--chhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHH
Confidence 000 00000 000000000 000000000000 0 000011233444555555544 322221 1222234433 3344
Q ss_pred hhhcc-hhhhhhHHHHHHHHHHHHhhcc---cCCccchhhHHHhHHHHHHHHHHHhhhcCCCCCCCCCCCCCccchhhhh
Q 001117 779 LHWKS-FEAERTSVFDRLIQMIGSAIEN---EDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRM 854 (1151)
Q Consensus 779 ~~~~~-~~~e~~~ll~~ii~~i~~~i~~---~~d~~~l~fWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (1151)
-+|++ ...+...++...+..++.+... .+-...+.||.+|...+++.--- . ...+.+- ++..+
T Consensus 1121 ~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~-~~~~~~~------~~~~~ 1187 (1463)
T COG5022 1121 QMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPF------A-ALSEKRL------YQSAL 1187 (1463)
T ss_pred HhhccchHHhhhhHHHHHHhhccchhccccchhccccccccccccccCCCCCch------h-hcchhhh------hHhhh
Confidence 57766 5556666666667666666443 23445678999999987641100 0 0000000 00000
Q ss_pred hccCCCCCcchhhhhhhhhhhHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCC-CcccC
Q 001117 855 AMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRT-SKG-SVLRS 932 (1151)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~-~~~-~~~~~ 932 (1151)
-+ +++. . + .. .| -..+..+..+..++|..|.... .+.+++...+ .|.. +.+ .+...
T Consensus 1188 ~d-~~~~----~----s-~s---~v------~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~-~~~~~~~~~~~~~~ 1245 (1463)
T COG5022 1188 YD-EKSK----L----S-SS---EV------NDLKNELIALFSKIFSGWPRGD--KLKKLISEGW-VPTEYSTSLKGFNN 1245 (1463)
T ss_pred hc-cccc----c----c-HH---HH------HHHHHHHHHHHHhccccchhhh--hhhhhhhhcc-chhhhccccccccc
Confidence 00 0000 0 0 01 11 1445677778888888887654 3333332111 0100 000 00000
Q ss_pred CCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhcccCccCCcchhHHHhchHHHHH
Q 001117 933 GRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELEL 1012 (1151)
Q Consensus 933 ~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~ 1012 (1151)
+...+..+...+.+.++.+++.+.+++..+.+.+.+..-.++++.-++|+.+||.|..+..-..|+.|.++.+|.+.+.+
T Consensus 1246 ~~~~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~ 1325 (1463)
T COG5022 1246 LNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDD 1325 (1463)
T ss_pred hhhcccCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhH
Confidence 12222245567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccHHHhHHHHHHHhHHhhcccccCCHHHHHhccCcCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHH
Q 001117 1013 WCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRI 1092 (1151)
Q Consensus 1013 W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~c~~L~~~Qi~kil~~Y~~d~~e~~~v~~~~i~~v~~ 1092 (1151)
||+.+| ...+..+|++++||++.+++.++...+++++ .+.|.+|+|.|+.+|+.+|.|.++| .++|.++..+|.+
T Consensus 1326 w~~~~~---i~~~~~~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ke~~~~~~a 1400 (1463)
T COG5022 1326 WCREFE---ISDVDEELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKE-NNLPKEILKKIEA 1400 (1463)
T ss_pred HHHhhc---ccchHHHHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhccc-CCChHHHHHHHhh
Confidence 999988 3556689999999999999998777777777 6999999999999999999999998 4999999977765
Q ss_pred hhhc
Q 001117 1093 LMTE 1096 (1151)
Q Consensus 1093 ~~~~ 1096 (1151)
....
T Consensus 1401 ~~~~ 1404 (1463)
T COG5022 1401 LLIK 1404 (1463)
T ss_pred hhhH
Confidence 5443
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1e-106 Score=998.40 Aligned_cols=416 Identities=33% Similarity=0.540 Sum_probs=392.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
|||+++|.++||+|++.+++|.|++++++++|..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 396 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f 475 (821)
T PTZ00014 396 FLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVF 475 (821)
T ss_pred CCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999887667789999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHHH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1151)
+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|
T Consensus 476 ~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f 555 (821)
T PTZ00014 476 KNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKF 555 (821)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCCC-CCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhhccCCC
Q 001117 161 AQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1151)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~~-~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1151)
++||++++++|++|.+|+. ....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......++..
T Consensus 556 ~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~ 635 (821)
T PTZ00014 556 VSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLA 635 (821)
T ss_pred HHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhccccccccccc
Confidence 9999999999999999985 468999999999999999999999999999999999999999999999986543333334
Q ss_pred CCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHHHH
Q 001117 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1151)
Q Consensus 240 ~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry 319 (1151)
+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||||+|||+++|||+|++|.+|+.||
T Consensus 636 k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY 715 (821)
T PTZ00014 636 KGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQF 715 (821)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCC-CccHHHHHHHHHhhcCC--CCcccccceeeeecccccchhhhhhhccc---hhHHHHHHHHhhhccchh
Q 001117 320 GILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLG---RSASIIQRKVRSYLSRKN 393 (1151)
Q Consensus 320 ~~l~~~~~~~-~~d~~~~~~~il~~~~~--~~~~~G~TkVFlr~~~~~~Le~~R~~~l~---~aa~~IQ~~~R~~l~Rk~ 393 (1151)
++|.+..... ..|+++.|+.||..+++ ++|++|+||||||+|+++.||..|.+++. .+++.||++||||++|++
T Consensus 716 ~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~ 795 (821)
T PTZ00014 716 KYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRK 795 (821)
T ss_pred HhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865433 35899999999999876 48999999999999999999998888764 578899999999999999
Q ss_pred hhchhhhhHhhhhHhhhhcchhh
Q 001117 394 YIMLRRSAIHIQAACRGQLARTV 416 (1151)
Q Consensus 394 y~~~r~a~i~IQ~~~Rg~lar~~ 416 (1151)
|.+++.|++.||+++|||++++.
T Consensus 796 ~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 796 VRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.3e-104 Score=951.63 Aligned_cols=457 Identities=61% Similarity=0.961 Sum_probs=440.1
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCcccccccccCCcc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQ-DPNSKSLIGVLDIYGFES 79 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~-~~~~~~~IgvLDi~GFE~ 79 (1151)
||+++.|..|||.|.+.+++++|+++++..+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||+
T Consensus 301 g~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEs 380 (862)
T KOG0160|consen 301 GCDEEALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFES 380 (862)
T ss_pred CCCHHHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccc
Confidence 8999999999999999999999999999999999999999999999999999999999987 455689999999999999
Q ss_pred ccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHH
Q 001117 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1151)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1151)
|+.|||||||||||||||||+||+|||++||+||.+|||+|+.|+|.||++|+|+|++ |.||++||||+|++|.++|++
T Consensus 381 F~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~ 459 (862)
T KOG0160|consen 381 FEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDET 459 (862)
T ss_pred cccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999 779999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhhccCCC
Q 001117 160 FAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1151)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1151)
|..||++.+.+|+.|.+|+.+++.|+|.||||+|+|++.||++||+|+|++++.+++..|+|+|+..+|++...++.+.+
T Consensus 460 ~a~KL~~~~~~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~ 539 (862)
T KOG0160|consen 460 LAQKLYQTLKRNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKS 539 (862)
T ss_pred HHHHHHHHhccCCccCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997665555566
Q ss_pred CCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHHHH
Q 001117 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1151)
Q Consensus 240 ~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry 319 (1151)
+++||+++|+.+|..||.+|++|+||||||||||+.+.|+.||+.+|++|||+|||||+|||+++|||.||+|.||+.||
T Consensus 540 ~~~tv~s~fk~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~ 619 (862)
T KOG0160|consen 540 KRSTVGSQFKLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRY 619 (862)
T ss_pred hcccHHHHHHHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCccHHHHHHHHHhhcCCCCcccccceeeeecccccchhhhhhhccchhHHHHHHHHhhhccchhhhchhh
Q 001117 320 GILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRR 399 (1151)
Q Consensus 320 ~~l~~~~~~~~~d~~~~~~~il~~~~~~~~~~G~TkVFlr~~~~~~Le~~R~~~l~~aa~~IQ~~~R~~l~Rk~y~~~r~ 399 (1151)
++|+| ... ..|++..|+.||+..+++.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|+.|..+|.
T Consensus 620 ~~L~~-~~~-~~~~~~~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~ 697 (862)
T KOG0160|consen 620 GILMP-NDS-ASDDLSLCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRS 697 (862)
T ss_pred hhcCc-chh-cccchHHHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 333 3466999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001117 400 SAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARN 463 (1151)
Q Consensus 400 a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~i~iQs~~Rg~~aR~ 463 (1151)
+++.||+++||+++|+ ..+ +..||+.||+.||+|..|+.|..++.+++.+|+.+||+.+|.
T Consensus 698 ~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 698 AVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998 334 778999999999999999999999999999999999999887
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.1e-98 Score=959.32 Aligned_cols=657 Identities=35% Similarity=0.542 Sum_probs=532.3
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
||+...|.++|++..+.++++.+.+..+.+|+..+..++||++|+|||.|+|.+||.+|.......+|||||||+|||+|
T Consensus 382 g~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIf 461 (1930)
T KOG0161|consen 382 GINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIF 461 (1930)
T ss_pred CCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999877777899999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1151)
+.||||||||||+||||||+||+|+|.+||++|.+|||.|.+|+| .|-|||||||+++. ||+++|||||++|++||.+
T Consensus 462 e~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEkp~-Gi~slLdEEc~~PkAtd~t 540 (1930)
T KOG0161|consen 462 EFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEKPM-GILSLLDEECVVPKATDKT 540 (1930)
T ss_pred CcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhchh-hHHHHHHHHHhcCCCccch
Confidence 999999999999999999999999999999999999999999999 89999999999865 9999999999999999999
Q ss_pred HHHHHHHHh-cCCCCcCCCC--CCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchh---
Q 001117 160 FAQKLYQTF-KNHKRFSKPK--LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE--- 233 (1151)
Q Consensus 160 ~~~kl~~~~-~~~~~~~~p~--~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--- 233 (1151)
|++||...| |+||.|.+|+ .....|.|.||||+|.|++.||++||+|++++.++.+|..|++++|+.||.+...
T Consensus 541 f~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~ 620 (1930)
T KOG0161|consen 541 FLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAA 620 (1930)
T ss_pred HHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccch
Confidence 999999999 8999999997 4568999999999999999999999999999999999999999999999987311
Q ss_pred --------hccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcC
Q 001117 234 --------ESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAG 305 (1151)
Q Consensus 234 --------~~~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~G 305 (1151)
..++++.|.||+..++.+|+.||.+|++|+|||||||.||+.|.|+.+|.++|+.||||.||||.|||.+.|
T Consensus 621 ~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~G 700 (1930)
T KOG0161|consen 621 AAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQG 700 (1930)
T ss_pred hhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhh
Confidence 123445678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccChHHHHHHHhhhhhccCC-CCccHHHHHHHHHhhcCCC--CcccccceeeeecccccchhhhhhhccchhHHHHH
Q 001117 306 YPTRKPFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQ 382 (1151)
Q Consensus 306 yp~r~~~~~F~~ry~~l~~~~~~-~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R~~~l~~aa~~IQ 382 (1151)
||.|++|.+|..||.++.|.... +..|.+.+|..|+..+..+ -|++|.||||||+|+++.||.+|...+....+.+|
T Consensus 701 fPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQ 780 (1930)
T KOG0161|consen 701 FPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQ 780 (1930)
T ss_pred CccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999966655443 3567799999999988554 69999999999999999999999999999999999
Q ss_pred HHHhhhccchhhhch---hhhhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001117 383 RKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGM 459 (1151)
Q Consensus 383 ~~~R~~l~Rk~y~~~---r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~i~iQs~~Rg~ 459 (1151)
+.+|||++|+.|.+. ..|+.+||+++|.|+. +|.|.|++.|.++++.+.....-....
T Consensus 781 A~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~-------------------lr~w~W~~Lf~kvkPLL~~~~~ee~~~ 841 (1930)
T KOG0161|consen 781 AAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLK-------------------LRTWPWWRLFTKVKPLLKVTKTEEEMR 841 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------hccCHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999877 4799999999999976 566788888888887544332221111
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 460 AARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEE 539 (1151)
Q Consensus 460 ~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~e 539 (1151)
..-.++...+..... ...-|..+.. ...++......+|.. ..+ +-....++......+.+.+..+|..+.+
T Consensus 842 ~~~~e~~~l~~~l~~---~e~~~~ele~-~~~~~~~e~~~l~~~---l~~--e~~~~~~aee~~~~~~~~k~~le~~l~~ 912 (1930)
T KOG0161|consen 842 AKEEEIQKLKEELQK---SESKRKELEE-KLVKLLEEKNDLQEQ---LQA--EKENLAEAEELLERLRAEKQELEKELKE 912 (1930)
T ss_pred HhHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111110000 0000000110 011111111111111 111 2223445667777888999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc------------
Q 001117 540 LTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVP------------ 604 (1151)
Q Consensus 540 l~~rl~~e~~~~~~le~~~~---~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~------------ 604 (1151)
++.+++.+++....++..+. +++..+++.+++++..+.+++.++.....+++.+.+++..+++..
T Consensus 913 ~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe 992 (1930)
T KOG0161|consen 913 LKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEE 992 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777776554 567788888898888888888877777777777766654433322
Q ss_pred ---------chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------------------
Q 001117 605 ---------VIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA---------------------- 653 (1151)
Q Consensus 605 ---------~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l---------------------- 653 (1151)
..+++++..|.+.+.+|++.+++++..++..+....++++...++...+
T Consensus 993 ~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~ 1072 (1930)
T KOG0161|consen 993 RIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLK 1072 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2267788899999999999999999998866666655555444444433
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 654 -------------LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 654 -------------~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++.+..+.++++.+.+|+.++.+++++++..+.
T Consensus 1073 kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~ 1118 (1930)
T KOG0161|consen 1073 KKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERA 1118 (1930)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666666666666666666666665
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.4e-98 Score=916.25 Aligned_cols=374 Identities=83% Similarity=1.313 Sum_probs=361.2
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
|||+++|.++||+|++.+++|.+++++++++|..+||||||+||++||+|||.+||.+|+++..+..+||||||||||+|
T Consensus 301 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f 380 (674)
T cd01384 301 MCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESF 380 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHHH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1151)
+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|
T Consensus 381 ~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f 460 (674)
T cd01384 381 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETF 460 (674)
T ss_pred CcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhhccCCCC
Q 001117 161 AQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSK 240 (1151)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~ 240 (1151)
++||++.+++|++|.+|+.++..|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.||+..+..+.+.++
T Consensus 461 ~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k 540 (674)
T cd01384 461 AQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSK 540 (674)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccc
Confidence 99999999999999999988899999999999999999999999999999999999999999999999876555445567
Q ss_pred CcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHHHHh
Q 001117 241 FSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFG 320 (1151)
Q Consensus 241 ~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~ 320 (1151)
++||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|+.||+
T Consensus 541 ~~tv~~~fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~ 620 (674)
T cd01384 541 FSSIGSRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFG 620 (674)
T ss_pred cccHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCccHHHHHHHHHhhcCCCCcccccceeeeecccccchhhhhhhcc
Q 001117 321 ILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVL 374 (1151)
Q Consensus 321 ~l~~~~~~~~~d~~~~~~~il~~~~~~~~~~G~TkVFlr~~~~~~Le~~R~~~l 374 (1151)
+|++.......|.++.|+.||..+++++|++|+||||||+|+++.||..|.+++
T Consensus 621 ~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 621 ILAPEVLKGSSDDKAACKKILDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HhCcccccCCCcHHHHHHHHHHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 999987766678899999999999999999999999999999999999998764
No 6
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=3e-98 Score=845.66 Aligned_cols=435 Identities=39% Similarity=0.666 Sum_probs=400.1
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----CCCCccccccccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-----PNSKSLIGVLDIY 75 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-----~~~~~~IgvLDi~ 75 (1151)
++.++.|+++||+|++.++||.+.++++++||.++||||||++|+|||+|||.+||++|... ..+...|||||||
T Consensus 304 ~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiy 383 (1001)
T KOG0164|consen 304 SVTGDELERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIY 383 (1001)
T ss_pred cCCHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEee
Confidence 47889999999999999999999999999999999999999999999999999999998532 2235889999999
Q ss_pred CCccccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCC-
Q 001117 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPR- 154 (1151)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~- 154 (1151)
|||+|+.||||||||||+||||||.|++-++|.|||||.+|||+|..|+|.+|..++||+|.+..|||++|||||+.|+
T Consensus 384 gfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~ 463 (1001)
T KOG0164|consen 384 GFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGT 463 (1001)
T ss_pred eEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CChHHHHHHHHHHhcCCCCcCCCC-------CCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccc
Q 001117 155 STHETFAQKLYQTFKNHKRFSKPK-------LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSL 227 (1151)
Q Consensus 155 ~td~~~~~kl~~~~~~~~~~~~p~-------~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~l 227 (1151)
.||.+|+++|.+.+++|++|..-. ++...|.|.||||+|+|++.||++||+|.+..|+..+|..|++|.+++|
T Consensus 464 vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~ 543 (1001)
T KOG0164|consen 464 VTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSL 543 (1001)
T ss_pred cchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHh
Confidence 699999999999999999997432 2346899999999999999999999999999999999999999999999
Q ss_pred cccchhhccC-CCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCC
Q 001117 228 FLPLAEESSK-TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGY 306 (1151)
Q Consensus 228 f~~~~~~~~~-~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gy 306 (1151)
|+....+-+. ..+++|+|++|+.|+..||+.|.+.+|+||||||||+.+.|+.||..+|.+|++|+|++|.+|++++||
T Consensus 544 fpeG~~~~~~~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgf 623 (1001)
T KOG0164|consen 544 FPEGNPDIAEVTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGF 623 (1001)
T ss_pred CCCCChhHHhhhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhccc
Confidence 9965433222 236789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChHHHHHHHhhhhhccCCC--CccHHHHHHHHHhhcCCC-Ccccccceeeeeccc-ccchhhhhhhccchhHHHHH
Q 001117 307 PTRKPFDEFVDRFGILASKVLDG--SSDEVTACKRLLEKVGLE-GYQIGKTKVFLRAGQ-MADLDARRTEVLGRSASIIQ 382 (1151)
Q Consensus 307 p~r~~~~~F~~ry~~l~~~~~~~--~~d~~~~~~~il~~~~~~-~~~~G~TkVFlr~~~-~~~Le~~R~~~l~~aa~~IQ 382 (1151)
.+|.+|+.|+.||+++++..|+. ..++++.|+.|++..+.. ++.+|+||||+|+.. +..||..|.+++...++.||
T Consensus 624 ahRq~Y~~FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQ 703 (1001)
T KOG0164|consen 624 AHRQPYERFLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQ 703 (1001)
T ss_pred ccccchHHHHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987753 346799999999999884 899999999999865 58899999999999999999
Q ss_pred HHHhhhccchhhhchhhhhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHHHHHHHHHhh
Q 001117 383 RKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDM 445 (1151)
Q Consensus 383 ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~ 445 (1151)
+.||||++|.+|++|+.+++.|+ +||.+..+ .++..||+.+|+|..++.|.+-
T Consensus 704 K~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk~ 756 (1001)
T KOG0164|consen 704 KAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGKS 756 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCCC
Confidence 99999999999999999999998 78755432 4567889999999999998753
No 7
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.4e-95 Score=892.02 Aligned_cols=369 Identities=51% Similarity=0.830 Sum_probs=348.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCcccccccccCC
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD---PNSKSLIGVLDIYGF 77 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~---~~~~~~IgvLDi~GF 77 (1151)
|||+++|.++||+|++.+++|.+++++++++|..+||||||+||++||+|||.+||.+|++. .....+|||||||||
T Consensus 299 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GF 378 (691)
T cd01380 299 GVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGF 378 (691)
T ss_pred CCCHHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcc
Confidence 79999999999999999999999999999999999999999999999999999999999876 456789999999999
Q ss_pred ccccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCCh
Q 001117 78 ESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTH 157 (1151)
Q Consensus 78 E~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td 157 (1151)
|+|+.||||||||||||||||++||+|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||
T Consensus 379 E~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td 457 (691)
T cd01380 379 ETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSD 457 (691)
T ss_pred cccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCCh
Confidence 9999999999999999999999999999999999999999999999999999999999985 699999999999999999
Q ss_pred HHHHHHHHHHhc--CCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhhc
Q 001117 158 ETFAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES 235 (1151)
Q Consensus 158 ~~~~~kl~~~~~--~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~ 235 (1151)
++|++||++.++ +|+.|.+|+.+...|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+.....+
T Consensus 458 ~~f~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~ 537 (691)
T cd01380 458 ESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELAS 537 (691)
T ss_pred HHHHHHHHHHhcccCCCCccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccc
Confidence 999999999998 899999999888999999999999999999999999999999999999999999999997542110
Q ss_pred -----------------cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhh
Q 001117 236 -----------------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEA 298 (1151)
Q Consensus 236 -----------------~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~ 298 (1151)
....+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||.+.|++||||+||||+
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~ 617 (691)
T cd01380 538 SSSSSAKSKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLET 617 (691)
T ss_pred cccccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHH
Confidence 012356899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccChHHHHHHHhhhhhccCCCCccHHHHHHHHHhhcCC--CCcccccceeeeecccccchhhhh
Q 001117 299 IRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1151)
Q Consensus 299 iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~--~~~~~G~TkVFlr~~~~~~Le~~R 370 (1151)
|||+++|||+|++|.+|+.||++|+|.......|.++.|+.||..+.. ++|++|+||||||+++++.||+.|
T Consensus 618 iri~r~Gyp~R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 618 IRISAAGFPSRWTYEEFAQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHhccCCccccHHHHHHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999999999999999999999998764456899999999999875 589999999999999999999876
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=4.8e-95 Score=890.94 Aligned_cols=370 Identities=44% Similarity=0.754 Sum_probs=347.8
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
|||+++|.++||+|++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 308 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f 387 (693)
T cd01377 308 GVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIF 387 (693)
T ss_pred CCCHHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1151)
+.||||||||||||||||++|++|||+.||++|.+|||+|+.|+| .||++|||||++||.|||++|||||++|+|||++
T Consensus 388 ~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~ 467 (693)
T cd01377 388 DFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKT 467 (693)
T ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCc--CCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhhc--
Q 001117 160 FAQKLYQTFKNHKRF--SKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES-- 235 (1151)
Q Consensus 160 ~~~kl~~~~~~~~~~--~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-- 235 (1151)
|++||++.+++|++| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......
T Consensus 468 ~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~ 547 (693)
T cd01377 468 FVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGD 547 (693)
T ss_pred HHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccc
Confidence 999999999999887 4455567899999999999999999999999999999999999999999999997643211
Q ss_pred --------cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCC
Q 001117 236 --------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYP 307 (1151)
Q Consensus 236 --------~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp 307 (1151)
.+.++++||+++|+.||+.||++|++|+||||||||||+.++|+.||.+.|++||||+||+|+|||+++|||
T Consensus 548 ~~~~~~~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp 627 (693)
T cd01377 548 GGGGGGKKKKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFP 627 (693)
T ss_pred cccccCCCCcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCC
Confidence 112245899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHhhhhhccC-CCCccHHHHHHHHHhhcCCC--Ccccccceeeeecccccchhhhh
Q 001117 308 TRKPFDEFVDRFGILASKVL-DGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1151)
Q Consensus 308 ~r~~~~~F~~ry~~l~~~~~-~~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R 370 (1151)
+|++|.+|+.||++|+|... ....|.++.|+.||+.++++ +|++|+||||||++++..||.+|
T Consensus 628 ~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 628 NRILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred ccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 99999999999999999764 23468899999999998774 89999999999999999999876
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=6e-95 Score=887.60 Aligned_cols=369 Identities=42% Similarity=0.713 Sum_probs=348.9
Q ss_pred CCCHHHHHHHHhhceEeecC----ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCccccccccc
Q 001117 1 MCDAKALEDSLCKREIVTRD----ETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIY 75 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~----e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgvLDi~ 75 (1151)
|||+++|.++||+|++.+++ |.+++|+++++|..+||+|||+||++||+|||.+||.+|.++ .....+|||||||
T Consensus 295 gv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIf 374 (674)
T cd01378 295 GVDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIY 374 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecc
Confidence 79999999999999999998 999999999999999999999999999999999999999876 5567899999999
Q ss_pred CCccccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CCcchhHhhHhhhcCC-
Q 001117 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFP- 153 (1151)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p- 153 (1151)
|||+|+.||||||||||||||||++||+|+|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||++|
T Consensus 375 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~ 454 (674)
T cd01378 375 GFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPH 454 (674)
T ss_pred cccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchh
Q 001117 154 RSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE 233 (1151)
Q Consensus 154 ~~td~~~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~ 233 (1151)
++||++|++||++.+++|+++.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+....
T Consensus 455 ~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~ 534 (674)
T cd01378 455 EGTDQTFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSD 534 (674)
T ss_pred CCChHHHHHHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhccccc
Confidence 99999999999999999999988888889999999999999999999999999999999999999999999999986433
Q ss_pred hccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChH
Q 001117 234 ESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFD 313 (1151)
Q Consensus 234 ~~~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~ 313 (1151)
.. ...+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.
T Consensus 535 ~~-~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~ 613 (674)
T cd01378 535 AD-SKKRPTTAGFKIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFD 613 (674)
T ss_pred cc-ccCCCCcHHHHHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHH
Confidence 22 22366899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCC-CCccHHHHHHHHHhhcCCC--Ccccccceeeeecc-cccchhhhh
Q 001117 314 EFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAG-QMADLDARR 370 (1151)
Q Consensus 314 ~F~~ry~~l~~~~~~-~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~-~~~~Le~~R 370 (1151)
+|+.||++|+|.... ...|++++|+.||..++++ +|++|+||||||+| +++.||..|
T Consensus 614 ~F~~rY~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 614 KFLQRYKLLSPKTWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 999999999987532 3468899999999998764 89999999999998 688999876
No 10
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=4.5e-95 Score=886.68 Aligned_cols=370 Identities=44% Similarity=0.712 Sum_probs=348.1
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCcccccccccCCcc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIYGFES 79 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgvLDi~GFE~ 79 (1151)
|||+++|.++||+|++.++||.+++|+++++|..+||||||+||++||+|||.+||.+|+++ .....+||||||||||+
T Consensus 295 gv~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~ 374 (671)
T cd01381 295 GVPIQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFEN 374 (671)
T ss_pred CCCHHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCccc
Confidence 79999999999999999999999999999999999999999999999999999999999765 45678999999999999
Q ss_pred ccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHH
Q 001117 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1151)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1151)
|+.||||||||||||||||++|++|||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++
T Consensus 375 f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~ 454 (671)
T cd01381 375 FDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQT 454 (671)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCC-CCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhhc-cC
Q 001117 160 FAQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES-SK 237 (1151)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~-~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~ 237 (1151)
|++||++.+++|++|.+|+. .+..|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.+|+.....+ ..
T Consensus 455 f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~ 534 (671)
T cd01381 455 MLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAET 534 (671)
T ss_pred HHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccc
Confidence 99999999999999998874 45799999999999999999999999999999999999999999999998754221 22
Q ss_pred CCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHH
Q 001117 238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1151)
Q Consensus 238 ~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ 317 (1151)
..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+|++|.+|+.
T Consensus 535 ~~k~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ 614 (671)
T cd01381 535 RKKKPTLSSQFRRSLDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVE 614 (671)
T ss_pred cccCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHH
Confidence 33678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCC--CccHHHHHHHHHhhcCC--CCcccccceeeeecccccchhhhh
Q 001117 318 RFGILASKVLDG--SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1151)
Q Consensus 318 ry~~l~~~~~~~--~~d~~~~~~~il~~~~~--~~~~~G~TkVFlr~~~~~~Le~~R 370 (1151)
||++|+|..... ..|.+..|+.|++.+.+ ++|++|+||||||++++..||..|
T Consensus 615 rY~~L~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 615 RYRVLVPGVKPAYKQDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHhCcccccccccccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 999999875432 34778999999998765 489999999999999999999876
No 11
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.6e-94 Score=881.13 Aligned_cols=366 Identities=46% Similarity=0.793 Sum_probs=341.4
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCcccccccccCCcc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIYGFES 79 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgvLDi~GFE~ 79 (1151)
|||+++|.++||+|++.++||.+++++++++|..+||||||+||++||+|||.+||.+|++.. ....+||||||||||+
T Consensus 298 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~ 377 (677)
T cd01383 298 GCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFES 377 (677)
T ss_pred CCCHHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeecccccc
Confidence 799999999999999999999999999999999999999999999999999999999998753 3467999999999999
Q ss_pred ccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHH
Q 001117 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1151)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1151)
|+.||||||||||||||||++|+++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++
T Consensus 378 f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~ 457 (677)
T cd01383 378 FDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLT 457 (677)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccch-----h-
Q 001117 160 FAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLA-----E- 233 (1151)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~-----~- 233 (1151)
|++||++++++|++|.+++ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|.... .
T Consensus 458 f~~kl~~~~~~~~~~~~~~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~ 534 (677)
T cd01383 458 FANKLKQHLKTNSCFRGER--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVV 534 (677)
T ss_pred HHHHHHHHhCCCCCCCCCC--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhcccccc
Confidence 9999999999999998775 468999999999999999999999999999999999999999876 554320 0
Q ss_pred h-----ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCC
Q 001117 234 E-----SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPT 308 (1151)
Q Consensus 234 ~-----~~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~ 308 (1151)
. ....++..||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+
T Consensus 535 ~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~ 614 (677)
T cd01383 535 GPLYVASAADSQKLSVGTKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPT 614 (677)
T ss_pred ccccccccccccCcchHHHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCc
Confidence 0 11123568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhhhhccCCCCccHHHHHHHHHhhcCCC--Ccccccceeeeecccccchhhhh
Q 001117 309 RKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1151)
Q Consensus 309 r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R 370 (1151)
|++|.+|+.||++|++..... .|++..|+.||+.++++ +|++|+||||||.|+++.||..|
T Consensus 615 R~~~~~F~~rY~~L~~~~~~~-~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 615 RMTHQEFARRYGFLLLENIAS-QDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred cccHHHHHHHHHHhCccccCC-CCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 999999999999999976543 57899999999988764 89999999999999999999876
No 12
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.7e-94 Score=882.31 Aligned_cols=369 Identities=39% Similarity=0.675 Sum_probs=343.3
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
|||+++|.++||+|++.+++|.+.+|+++++|..+||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|
T Consensus 296 gv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f 374 (677)
T cd01387 296 QISPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDL 374 (677)
T ss_pred CCCHHHHHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccC
Confidence 79999999999999999999999999999999999999999999999999999999999864 44679999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHHH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1151)
+.||||||||||||||||++||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||++|++||++|
T Consensus 375 ~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~ 454 (677)
T cd01387 375 SFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTF 454 (677)
T ss_pred CCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhh------
Q 001117 161 AQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE------ 234 (1151)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~------ 234 (1151)
++|++..+++|+.|.+|+.+.+.|+|+||||+|+|+++||++||+|.++++++++|..|++++|+.+|+.....
T Consensus 455 ~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~ 534 (677)
T cd01387 455 LQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRL 534 (677)
T ss_pred HHHHHHhccCCccccCCCCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccc
Confidence 99999999999999999988889999999999999999999999999999999999999999999999653210
Q ss_pred ---c--cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCc
Q 001117 235 ---S--SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTR 309 (1151)
Q Consensus 235 ---~--~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r 309 (1151)
+ ++..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|
T Consensus 535 ~~~s~~~~~~~~~tv~~~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r 614 (677)
T cd01387 535 GKSSSGTRLYKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVR 614 (677)
T ss_pred cCCCccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCcc
Confidence 0 01124579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHhhhhhccCCCCccHHHHHHHHHhhcCCC--Ccccccceeeeecccccchhhhh
Q 001117 310 KPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1151)
Q Consensus 310 ~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R 370 (1151)
++|.+|+.||++|+|.......+.+..+..++..++++ +|++|+||||||.+++..||..|
T Consensus 615 ~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 615 LPFQHFIDRYRCLVALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 99999999999999975443333345557888877654 79999999999999999999876
No 13
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1e-93 Score=877.41 Aligned_cols=367 Identities=40% Similarity=0.650 Sum_probs=344.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCcccccccccCC
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP---NSKSLIGVLDIYGF 77 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~---~~~~~IgvLDi~GF 77 (1151)
|||+++|.++||++++.++||.+++|+++++|..+||+|||+||++||+|||++||.+|++.. ....+|||||||||
T Consensus 307 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GF 386 (692)
T cd01385 307 KVKRETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGF 386 (692)
T ss_pred CCCHHHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCcc
Confidence 799999999999999999999999999999999999999999999999999999999998643 24689999999999
Q ss_pred ccccC-CchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCC
Q 001117 78 ESFKT-NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRST 156 (1151)
Q Consensus 78 E~f~~-NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~t 156 (1151)
|+|+. ||||||||||||||||++|++|||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+||
T Consensus 387 E~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~t 466 (692)
T cd01385 387 EDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHAT 466 (692)
T ss_pred ccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCC
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhhcc
Q 001117 157 HETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESS 236 (1151)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~ 236 (1151)
|++|++|+++.+++|+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+.+..
T Consensus 467 d~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~ 546 (692)
T cd01385 467 SQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVF 546 (692)
T ss_pred HHHHHHHHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccc
Confidence 99999999999999999999988788999999999999999999999999999999999999999999999976432211
Q ss_pred ---------CCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCC
Q 001117 237 ---------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYP 307 (1151)
Q Consensus 237 ---------~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp 307 (1151)
++.+.+||+++|+.+|+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||
T Consensus 547 ~~~~~~~~~~~~~~~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp 626 (692)
T cd01385 547 RWAVLRAAFRAMAAPSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYS 626 (692)
T ss_pred ccccccccccCccCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCC
Confidence 12234799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHhhhhhccCCCCccHHHHHHHHHhhcCCC--Ccccccceeeeecccccchhhhh
Q 001117 308 TRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1151)
Q Consensus 308 ~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R 370 (1151)
+|++|.+|+.||++|+|.... ..++.|+.||+.++++ +|++|+||||||+++++.||..-
T Consensus 627 ~R~~~~~F~~rY~~L~~~~~~---~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~ 688 (692)
T cd01385 627 VRYTYQDFTQQYRILLPKGAQ---SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETL 688 (692)
T ss_pred ccccHHHHHHHHHHhCccccc---chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHH
Confidence 999999999999999987432 3467799999998775 89999999999999999998753
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.1e-93 Score=880.13 Aligned_cols=367 Identities=40% Similarity=0.656 Sum_probs=343.1
Q ss_pred CCCHHHHHHHHhhceEe-----ecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001117 1 MCDAKALEDSLCKREIV-----TRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~-----~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~ 75 (1151)
|||+++|.++||+|++. ++|+.+++|+++++|..+||+|||+||++||+|||.+||.+|..+ .+..+|||||||
T Consensus 327 gv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~-~~~~~IgiLDIf 405 (717)
T cd01382 327 GLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE-TSSNFIGVLDIA 405 (717)
T ss_pred CCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcEEEEEecc
Confidence 79999999999999998 789999999999999999999999999999999999999999765 356789999999
Q ss_pred CCccccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCC
Q 001117 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1151)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~ 155 (1151)
|||+|+.||||||||||||||||++|+++||+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|++
T Consensus 406 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~ 485 (717)
T cd01382 406 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQP 485 (717)
T ss_pred ccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccc
Q 001117 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1151)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1151)
||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++|++|++++|+
T Consensus 486 tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~n~~i~ 565 (717)
T cd01382 486 SDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESKDKFLR 565 (717)
T ss_pred CHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCchHHHH
Confidence 9999999999999999988877542 357999999999999999999999999999999999999999999
Q ss_pred cccccchhhc---c--CCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHH
Q 001117 226 SLFLPLAEES---S--KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIR 300 (1151)
Q Consensus 226 ~lf~~~~~~~---~--~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~ir 300 (1151)
.||+...... . +..++.||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||||+||
T Consensus 566 ~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vr 645 (717)
T cd01382 566 SLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLD 645 (717)
T ss_pred HHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHH
Confidence 9997643211 1 1225679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccChHHHHHHHhhhhhccCCCCccHHHHHHHHHhhcCCC--Ccccccceeeeecccccchhhh
Q 001117 301 ISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDAR 369 (1151)
Q Consensus 301 i~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~ 369 (1151)
|+++|||+|++|.+|+.||+.|+|.... ..|++..|+.||..++++ +|++|+||||||+|+++.||++
T Consensus 646 i~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 646 LMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred HHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 9999999999999999999999987554 358899999999998774 8999999999999999999975
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=5.4e-93 Score=864.45 Aligned_cols=347 Identities=40% Similarity=0.707 Sum_probs=331.7
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-----CCccccccccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN-----SKSLIGVLDIY 75 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-----~~~~IgvLDi~ 75 (1151)
|||+++|.++||+|++.++|+++++|+++++|..+||||||+||++||+|||.+||.+|.++.. ...+|||||||
T Consensus 302 gv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~ 381 (653)
T cd01379 302 CIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIF 381 (653)
T ss_pred CCCHHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEecc
Confidence 7999999999999999999999999999999999999999999999999999999999986532 35789999999
Q ss_pred CCccccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCC
Q 001117 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1151)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~ 155 (1151)
|||+|+.||||||||||||||||++|+++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|
T Consensus 382 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~ 461 (653)
T cd01379 382 GFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQA 461 (653)
T ss_pred ccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhhc
Q 001117 156 THETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES 235 (1151)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~ 235 (1151)
||++|++|++.+++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|
T Consensus 462 td~~~~~kl~~~~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S---------------- 524 (653)
T cd01379 462 TDQTLVEKFEDNLK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS---------------- 524 (653)
T ss_pred CHHHHHHHHHHhcC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------
Confidence 99999999999886 5678889888889999999999999999999999999999999999887
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHH
Q 001117 236 SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEF 315 (1151)
Q Consensus 236 ~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F 315 (1151)
+||+++|+.||++||++|++|+||||||||||+.+.|+.||+..|++||||+||+|+|||+++|||+|++|.+|
T Consensus 525 ------~tv~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F 598 (653)
T cd01379 525 ------QTVASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANF 598 (653)
T ss_pred ------cHHHHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCCccHHHHHHHHHhhcCCCCcccccceeeeecccccchhhhh
Q 001117 316 VDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARR 370 (1151)
Q Consensus 316 ~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~~~~~G~TkVFlr~~~~~~Le~~R 370 (1151)
+.||++|++.......+.++.|+.||..++.++|++|+||||||+++++.||++|
T Consensus 599 ~~rY~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 599 IRRYCFLAYRFEEEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred HHHHHHhccccccccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 9999999986544445789999999999999999999999999999999999875
No 16
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=2.8e-92 Score=868.79 Aligned_cols=371 Identities=53% Similarity=0.889 Sum_probs=352.0
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
||++++|.++||++++.++||.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 303 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f 382 (677)
T smart00242 303 GVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIF 382 (677)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999887677899999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHHH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1151)
+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 383 ~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~ 462 (677)
T smart00242 383 EVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTF 462 (677)
T ss_pred ccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCC-CCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhhccCCC
Q 001117 161 AQKLYQTFKNHKRFSKPK-LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1151)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~-~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1151)
++||++.+++|+.|.+|+ ..+..|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.......+..
T Consensus 463 ~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~ 542 (677)
T smart00242 463 LEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKK 542 (677)
T ss_pred HHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccC
Confidence 999999999999999994 5668999999999999999999999999999999999999999999999987644333344
Q ss_pred CCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHHHH
Q 001117 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1151)
Q Consensus 240 ~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry 319 (1151)
+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||+..|+.||||+||+|+|||++.|||+|++|.+|+.||
T Consensus 543 ~~~tv~~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry 622 (677)
T smart00242 543 RFRTVGSQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRY 622 (677)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCC-CccHHHHHHHHHhhcCC--CCcccccceeeeecccccchhhhhh
Q 001117 320 GILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRT 371 (1151)
Q Consensus 320 ~~l~~~~~~~-~~d~~~~~~~il~~~~~--~~~~~G~TkVFlr~~~~~~Le~~R~ 371 (1151)
++|++..... ..|+++.|+.||..+++ ++|++|+||||||++++..||+.|.
T Consensus 623 ~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 623 RVLLPDTWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 9999875432 34689999999999865 5899999999999999999999874
No 17
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=7.9e-92 Score=792.85 Aligned_cols=400 Identities=38% Similarity=0.666 Sum_probs=370.2
Q ss_pred CCCHHHHHHHHhhceEee----cCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCccccccccc
Q 001117 1 MCDAKALEDSLCKREIVT----RDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIY 75 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~----~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgvLDi~ 75 (1151)
|||...|++.||.|.+.+ +.+.+.+||+++||.+.||||||+||.+||||||++||.+|...+ ....+|||||||
T Consensus 312 gi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIY 391 (1106)
T KOG0162|consen 312 GIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIY 391 (1106)
T ss_pred cCCHHHHHHHHHHHHHhhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEee
Confidence 789999999999999986 358999999999999999999999999999999999999997433 356889999999
Q ss_pred CCccccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcC-CcchhHhhHhhhcCC-
Q 001117 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKK-PGGIIALLDEACMFP- 153 (1151)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~-~~Gil~lLdee~~~p- 153 (1151)
|||+|++||||||||||.||||||.|++-++|.|||||.+|||.|++|+|.||.-++||||.| |.||+++|||.|...
T Consensus 392 GFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~H 471 (1106)
T KOG0162|consen 392 GFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAH 471 (1106)
T ss_pred eeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999974 679999999999854
Q ss_pred ---CCChHHHHHHHHHHhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCccccccccc
Q 001117 154 ---RSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLP 230 (1151)
Q Consensus 154 ---~~td~~~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~ 230 (1151)
.|.|++|+++|...+++||+|..- ...|+|+||||+|+||++||.+||+|.+..|+++|++.|+++|++.||+.
T Consensus 472 a~~~~aDqa~~qrLn~~~~s~phF~~~---s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe 548 (1106)
T KOG0162|consen 472 ADSEGADQALLQRLNKLFGSHPHFESR---SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPE 548 (1106)
T ss_pred cccchhHHHHHHHHHHHhcCCCccccc---cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCch
Confidence 467999999999999999999843 47899999999999999999999999999999999999999999999997
Q ss_pred chhhccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCcc
Q 001117 231 LAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRK 310 (1151)
Q Consensus 231 ~~~~~~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~ 310 (1151)
..+.. +..+++|.|+.++.|-+.|++||..|.||||||||||+.|.|+.||..+|++|+.|+|+-|.|||+++||.+|.
T Consensus 549 ~v~~d-skrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr 627 (1106)
T KOG0162|consen 549 NVDAD-SKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRR 627 (1106)
T ss_pred hhccc-ccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHH
Confidence 64433 44578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhhccCCC-CccHHHHHHHHHhhcCC--CCcccccceeeeecc-cccchhhhhhhccchhHHHHHHHHh
Q 001117 311 PFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAG-QMADLDARRTEVLGRSASIIQRKVR 386 (1151)
Q Consensus 311 ~~~~F~~ry~~l~~~~~~~-~~d~~~~~~~il~~~~~--~~~~~G~TkVFlr~~-~~~~Le~~R~~~l~~aa~~IQ~~~R 386 (1151)
.|+.|++||.+|.|..+.. ..|++++|+.||+..++ ++||+|.||||++.. .+..||.+|+.+....|..||+.||
T Consensus 628 ~F~kF~qRyailsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWR 707 (1106)
T KOG0162|consen 628 AFDKFAQRYAILSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWR 707 (1106)
T ss_pred HHHHHHHHheecCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999987542 46899999999998766 489999999999974 4678999999999999999999999
Q ss_pred hhccchhhhchhhhhHhh
Q 001117 387 SYLSRKNYIMLRRSAIHI 404 (1151)
Q Consensus 387 ~~l~Rk~y~~~r~a~i~I 404 (1151)
.|++|++|.++|.-+..+
T Consensus 708 rfv~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 708 RFVARRKYEKMREEATKL 725 (1106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998755443
No 18
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.7e-90 Score=855.90 Aligned_cols=370 Identities=49% Similarity=0.818 Sum_probs=344.7
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
||++++|.++||++++.++||.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 296 gv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 375 (679)
T cd00124 296 GLDPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIF 375 (679)
T ss_pred CCCHHHHHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999887677889999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHHH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1151)
+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 376 ~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~ 455 (679)
T cd00124 376 EKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETF 455 (679)
T ss_pred CCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCC-CCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhh-----
Q 001117 161 AQKLYQTFKNHKRFSK-PKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE----- 234 (1151)
Q Consensus 161 ~~kl~~~~~~~~~~~~-p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~----- 234 (1151)
++||++.+++|++|.. ++..+..|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.....
T Consensus 456 ~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~ 535 (679)
T cd00124 456 LEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSS 535 (679)
T ss_pred HHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccc
Confidence 9999999999998644 4456689999999999999999999999999999999999999999999999764211
Q ss_pred ------ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCC
Q 001117 235 ------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPT 308 (1151)
Q Consensus 235 ------~~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~ 308 (1151)
..+..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+
T Consensus 536 ~~~~~~~~~~~~~~tv~~~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~ 615 (679)
T cd00124 536 TGSTSSKGKKKKGQTVGSQFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSV 615 (679)
T ss_pred cccccccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCc
Confidence 11223678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhhhhccCCCCccHHHHHHHHHhhcCCC--Ccccccceeeeecccccchhhhh
Q 001117 309 RKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1151)
Q Consensus 309 r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R 370 (1151)
|++|.+|+.||++|++.........+..|+.++..++++ +|++|+||||||++++..||..|
T Consensus 616 R~~~~eF~~rY~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 616 RIPFDEFLSRYRFLAPDLLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred eeeHHHHHHHHHHhCcccccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 999999999999999876544333344499999988764 89999999999999999999865
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=3e-89 Score=841.58 Aligned_cols=370 Identities=29% Similarity=0.455 Sum_probs=329.8
Q ss_pred CCCHHHHHHHHhhceEeecCc-------------eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 001117 1 MCDAKALEDSLCKREIVTRDE-------------TITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKS 67 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e-------------~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~ 67 (1151)
||++++|.++|+++++.++++ .++.++++.+|..+||||||+||++||+|||.+||.+|.++..+..
T Consensus 294 gv~~~~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~ 373 (767)
T cd01386 294 GCPLEELSSATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIA 373 (767)
T ss_pred CCCHHHHHHHhcccEEeecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 799999999999998776543 3445788999999999999999999999999999999988766678
Q ss_pred ccccccccCCccccC------CchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCC-
Q 001117 68 LIGVLDIYGFESFKT------NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKP- 139 (1151)
Q Consensus 68 ~IgvLDi~GFE~f~~------NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldlie~~~- 139 (1151)
+||||||||||+|+. |||||||||||||||||+||++||+.||++|.+|||+|+++.+ .||++|||||+++|
T Consensus 374 ~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~ 453 (767)
T cd01386 374 SIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQ 453 (767)
T ss_pred EEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccc
Confidence 999999999999984 8999999999999999999999999999999999999987665 79999999999865
Q ss_pred -------------cchhHhhHhhhcCCCCChHHHHHHHHHHhcCCCCcCCCC------CCCCceEEEeeCcc--eEEecc
Q 001117 140 -------------GGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPK------LARSDFTICHYAGD--VTYQTE 198 (1151)
Q Consensus 140 -------------~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~p~------~~~~~F~i~H~ag~--V~Y~~~ 198 (1151)
.|||++|||||++|++||++|++||++.+++|++|.++. .....|+|+||||+ |+|++.
T Consensus 454 ~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~ 533 (767)
T cd01386 454 QVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVT 533 (767)
T ss_pred cccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCC
Confidence 599999999999999999999999999999998887632 12468999999995 999999
Q ss_pred chhhhhchhh-hHHHHHHHhhccCcccccccccchh-------------hcc----------C--------CCCCcchHH
Q 001117 199 LFLDKNKDYV-VAEHQALLSASKCSFVSSLFLPLAE-------------ESS----------K--------TSKFSSIGS 246 (1151)
Q Consensus 199 ~fl~kN~d~~-~~~~~~ll~~S~~~~v~~lf~~~~~-------------~~~----------~--------~~~~~tv~~ 246 (1151)
||++||+|.+ +.+++.+|+.|++++|..||+.... ..+ + ..+.+||++
T Consensus 534 gfleKNkD~~~~~~~~~ll~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~ 613 (767)
T cd01386 534 GWLRRAKPNPAALNAPQLLQDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCV 613 (767)
T ss_pred CHHHhcCCCCChHHHHHHHHhCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHH
Confidence 9999999965 6899999999999999999954210 000 0 013458999
Q ss_pred HHHHHHHHHHHHhccCCCeeeEecCCCCCCC----------------------CCcccccchhhhhhccchhhhHHHHhc
Q 001117 247 RFKQQLQQLLETLSSSEPHYIRCVKPNNLLK----------------------PAIFENKNVLQQLRCGGVMEAIRISCA 304 (1151)
Q Consensus 247 ~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~----------------------~~~fd~~~v~~QLr~~gvle~iri~~~ 304 (1151)
+|+.||+.||++|++|+||||||||||+.|. |+.||.++|++||||+||+|+|||+++
T Consensus 614 qFk~qL~~Lm~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~ 693 (767)
T cd01386 614 QVKLQVDALIDTLRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRL 693 (767)
T ss_pred HHHHHHHHHHHHHhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhc
Confidence 9999999999999999999999999999974 789999999999999999999999999
Q ss_pred CCCCccChHHHHHHHhhhhhccCC------CCccHHHHHHHHHhhcCCC--Ccccccceeeeecccccchhhhh
Q 001117 305 GYPTRKPFDEFVDRFGILASKVLD------GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1151)
Q Consensus 305 Gyp~r~~~~~F~~ry~~l~~~~~~------~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R 370 (1151)
|||+|++|.+|+.||++|++.... ...|++++|+.||..++++ +|++|+||||||+++++.||..|
T Consensus 694 Gfp~R~~~~~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 694 GFPISVPLGEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred CCcccccHHHHHHHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 999999999999999999986432 2358899999999998764 89999999999999999999876
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=1e-84 Score=735.25 Aligned_cols=436 Identities=38% Similarity=0.624 Sum_probs=382.2
Q ss_pred CCCHHHHHHHHhhceEee-----cCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001117 1 MCDAKALEDSLCKREIVT-----RDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~-----~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~ 75 (1151)
|+|..+|.-.||.|.+.+ +|-.|.+||-+.+|..+||||||++|++||||||.+||+++... .+..|||||||.
T Consensus 381 Gld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiA 459 (1259)
T KOG0163|consen 381 GLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIA 459 (1259)
T ss_pred CCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeec
Confidence 789999999999999875 35588999999999999999999999999999999999999553 578999999999
Q ss_pred CCccccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCC
Q 001117 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1151)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~ 155 (1151)
|||-|.+||||||||||+|||||++||+.+++.|||.|.+||++...|+|.|||+||+|||.|..|||+|||||.++|+.
T Consensus 460 GFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~ 539 (1259)
T KOG0163|consen 460 GFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKP 539 (1259)
T ss_pred cceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccc
Q 001117 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1151)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1151)
+++.|....+..+++|=+...|+.+ ...|.|+||||.|.|++..|++||.|.+...+..|+..|++|++.
T Consensus 540 s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~ 619 (1259)
T KOG0163|consen 540 SYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLV 619 (1259)
T ss_pred chHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHH
Confidence 9999999999999988777777643 347999999999999999999999999999999999999999999
Q ss_pred cccccchhhccC--C--CCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHH
Q 001117 226 SLFLPLAEESSK--T--SKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRI 301 (1151)
Q Consensus 226 ~lf~~~~~~~~~--~--~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri 301 (1151)
+||++....+++ . -++-|||+.|+.+|..||+.|++|..|||||||||....+++||...++.||.|.|+...+++
T Consensus 620 sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~L 699 (1259)
T KOG0163|consen 620 SLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLEL 699 (1259)
T ss_pred HHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHH
Confidence 999875332221 1 256799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccChHHHHHHHhhhhhccCCCCccHHHHHHHHHhhcCCC--CcccccceeeeecccccchhhhhhhccchhHH
Q 001117 302 SCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSAS 379 (1151)
Q Consensus 302 ~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R~~~l~~aa~ 379 (1151)
+..|||+|-+|.+.+.-|.-.+|..+. ..|++-.|+.+...+|++ +|+||.||||||.|.++..+++-..--...+.
T Consensus 700 Mq~GyPSR~~F~dLYamYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~ 778 (1259)
T KOG0163|consen 700 MQHGYPSRTSFADLYAMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLE 778 (1259)
T ss_pred HhcCCCccccHHHHHHHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHH
Confidence 999999999999999999988887654 469999999999999986 89999999999999999998865444444444
Q ss_pred HHHHHHhhhccchhhhchhhhhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHHHHHHHHHhhhh
Q 001117 380 IIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1151)
Q Consensus 380 ~IQ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~ 447 (1151)
.|+ .+..|+.|-++.+...++..+=..--.. .-|..+++++|++.|||++|+++...-.
T Consensus 779 lv~-kVn~WLv~sRWkk~q~~a~sVIKLkNkI--------~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 779 LVA-KVNKWLVRSRWKKSQYGALSVIKLKNKI--------IYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHH-HHHHHHHHhHHHHhhhhhhheeehhhHH--------HHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 444 4677888888776654443221110000 1133578889999999999998775443
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=2.6e-85 Score=820.76 Aligned_cols=359 Identities=51% Similarity=0.866 Sum_probs=318.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCcccccccccCCcc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIYGFES 79 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgvLDi~GFE~ 79 (1151)
|||+++|.++||+|++.+++|.+++++++++|..+||+|||+||++||+|||++||.+|++.. ....+||||||||||+
T Consensus 297 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~ 376 (689)
T PF00063_consen 297 GVDSEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFEN 376 (689)
T ss_dssp TS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B--
T ss_pred CCCHHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCcccccc
Confidence 799999999999999999999999999999999999999999999999999999999998865 6788999999999999
Q ss_pred ccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhHhhHhhhcCCCCChH
Q 001117 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHE 158 (1151)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~ 158 (1151)
|..||||||||||||||||++|++++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||++|++||+
T Consensus 377 ~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~ 456 (689)
T PF00063_consen 377 FSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDE 456 (689)
T ss_dssp -SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HH
T ss_pred ccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhh
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcCCCC----CCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchh
Q 001117 159 TFAQKLYQTF-KNHKRFSKPK----LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE 233 (1151)
Q Consensus 159 ~~~~kl~~~~-~~~~~~~~p~----~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~ 233 (1151)
+|++++...+ ++|+.|.+|+ .+...|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||.....
T Consensus 457 ~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~ 536 (689)
T PF00063_consen 457 SFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEAT 536 (689)
T ss_dssp HHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH
T ss_pred HHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccc
Confidence 9999999999 8999999885 3678999999999999999999999999999999999999999999999987542
Q ss_pred h---------------------ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhc
Q 001117 234 E---------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRC 292 (1151)
Q Consensus 234 ~---------------------~~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~ 292 (1151)
. .....+.+||+++|+.+|+.||++|++|+||||||||||+.+.|+.||..+|.+|||+
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~ 616 (689)
T PF00063_consen 537 ATSSSSSSLSRRSSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRY 616 (689)
T ss_dssp ---S-S-S-BTTTTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhh
Confidence 0 0011245899999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHhcCCCCccChHHHHHHHhhhhhccCCC----CccHHHHHHHHHhhcCC--CCcccccceeeee
Q 001117 293 GGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDG----SSDEVTACKRLLEKVGL--EGYQIGKTKVFLR 359 (1151)
Q Consensus 293 ~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~----~~d~~~~~~~il~~~~~--~~~~~G~TkVFlr 359 (1151)
+||+|+++|++.|||+|++|.+|++||++|++..... ..++++.|+.||+.+++ ++|++|+||||||
T Consensus 617 ~gile~vri~~~Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 617 SGILETVRIRRQGYPVRLTFDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp TTHHHHHHHHHCSSSEEEEHHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhhhhhcccceecchhhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 9999999999999999999999999999999975532 46899999999999987 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=2.5e-52 Score=515.11 Aligned_cols=508 Identities=30% Similarity=0.381 Sum_probs=396.4
Q ss_pred CCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--CCcccccccccCCcc
Q 001117 2 CDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN--SKSLIGVLDIYGFES 79 (1151)
Q Consensus 2 ~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~--~~~~IgvLDi~GFE~ 79 (1151)
++++.|.++||.++.+++||.+..++++++|..+||++||.||++||.|||.+||..+.++.. ....||||||||||+
T Consensus 360 ~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~ 439 (1062)
T KOG4229|consen 360 IKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFEN 439 (1062)
T ss_pred cCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccc
Confidence 678899999999999999999999999999999999999999999999999999999977654 368899999999999
Q ss_pred ccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHH
Q 001117 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1151)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1151)
|..|||||+|||||||+||++|++|||.+||+||..|+|+|..|.|.||.+|+|||..||.||+.+||||+.+|++||.+
T Consensus 440 f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~t 519 (1062)
T KOG4229|consen 440 FERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQT 519 (1062)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCC-CCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhhcc--
Q 001117 160 FAQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESS-- 236 (1151)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~-~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~-- 236 (1151)
++.|+..+++.+..+..|+. ..+.|+|.||||.|.|++.||++||+|+++.+..+++.+|.+.++..++...+....
T Consensus 520 l~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~ 599 (1062)
T KOG4229|consen 520 LLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRW 599 (1062)
T ss_pred HHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcc
Confidence 99999999998887777765 457999999999999999999999999999999999999999998888765432211
Q ss_pred -----------------------CC-----C---------CCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCC
Q 001117 237 -----------------------KT-----S---------KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPA 279 (1151)
Q Consensus 237 -----------------------~~-----~---------~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~ 279 (1151)
+. + ...+++.+++-++......|.+..+||.|||++|..-.+.
T Consensus 600 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~ 679 (1062)
T KOG4229|consen 600 FELRALKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALE 679 (1062)
T ss_pred hhhhhhcccccccchhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhh
Confidence 00 0 1235667777788888899999999999999999999999
Q ss_pred ccccc-chhhhhhccchhhhHHHHhcCCCCccChHHHHHHHhhhhhccCCCCccHHHHHHHHHhhcCCCCcccccceeee
Q 001117 280 IFENK-NVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFL 358 (1151)
Q Consensus 280 ~fd~~-~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~~~~~G~TkVFl 358 (1151)
.++.. .+..++..-|...+....+.|+..+..|.+++.+++...-.......-...+|..++.+.+.+.+..+.++++.
T Consensus 680 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 759 (1062)
T KOG4229|consen 680 QGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLP 759 (1062)
T ss_pred hcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhccccc
Confidence 99987 89999999999999999999999999999988777633211111111235567778888888888999888888
Q ss_pred ecccccchhhhhhhccchhHHHHHHHHhhhccchh---------------------------hhch----hhhhHhhhhH
Q 001117 359 RAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKN---------------------------YIML----RRSAIHIQAA 407 (1151)
Q Consensus 359 r~~~~~~Le~~R~~~l~~aa~~IQ~~~R~~l~Rk~---------------------------y~~~----r~a~i~IQ~~ 407 (1151)
+..-...+.-.+.+...+ .+..|...+.|..+.. +..+ -...+.+|..
T Consensus 760 ~~~~~~~~~~~~~e~~t~-~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~ 838 (1062)
T KOG4229|consen 760 RYIPDPCLDPVRRERVTQ-LRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVS 838 (1062)
T ss_pred ccCccccCCccccchhhh-HHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhh
Confidence 764433332222222111 1222333333333222 2111 1244555555
Q ss_pred hhhhcchhhccc--------------------------------------------------------------cccchh
Q 001117 408 CRGQLARTVYES--------------------------------------------------------------MRREAS 425 (1151)
Q Consensus 408 ~Rg~lar~~~~~--------------------------------------------------------------~r~~~A 425 (1151)
|-|...+.+... +..+..
T Consensus 839 ~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 918 (1062)
T KOG4229|consen 839 YTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEAN 918 (1062)
T ss_pred chhhhccchheeccccccccchhccccccccCCccchhhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhH
Confidence 554333322211 000011
Q ss_pred ---hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 001117 426 ---CLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELR-FRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQ 501 (1151)
Q Consensus 426 ---Ai~IQ~~~R~~~~rk~y~~~r~a~i~iQs~~Rg~~aR~~~~-~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ 501 (1151)
+...|++++....++.+.++..+.+.+| +++...|+... ......++.-+|..|+.+..+..+...+++.+.+|
T Consensus 919 ~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 996 (1062)
T KOG4229|consen 919 DELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQ 996 (1062)
T ss_pred HHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchh
Confidence 3355777777777888888888888888 66666665443 23344577778888888888888888888888888
Q ss_pred hhhhHHHHHHH
Q 001117 502 CAWRGKVARRE 512 (1151)
Q Consensus 502 ~~~R~~~arr~ 512 (1151)
..+++..-+..
T Consensus 997 ~~~~~~~~~~~ 1007 (1062)
T KOG4229|consen 997 SPRSRPAYTMI 1007 (1062)
T ss_pred cccccchhhhh
Confidence 87776654443
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=100.00 E-value=9.5e-33 Score=319.97 Aligned_cols=310 Identities=18% Similarity=0.335 Sum_probs=246.5
Q ss_pred hhhhhhhhcHHHHHHhcc-ccCCccCCCcchHHHHHHHHhhhcc--hhhhh----hHHHHHHHHHHHHhhccc-CCccch
Q 001117 741 SHIEHQHENVDALINCVA-KNLGYCNGKPVAAFTIYKCLLHWKS--FEAER----TSVFDRLIQMIGSAIENE-DDNDHM 812 (1151)
Q Consensus 741 ~l~e~~~e~~~~l~~~i~-~~~~~~~~~P~~A~il~~cl~~~~~--~~~e~----~~ll~~ii~~i~~~i~~~-~d~~~l 812 (1151)
.-+|+..-.++..+..|+ .+.+..+++-++-|- |..-.|.+. +..++ ..||.++++.+..++++. ++...|
T Consensus 541 ~si~~~d~~~~sfL~~vi~~~a~t~~~~~s~~y~-y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~L 619 (1629)
T KOG1892|consen 541 ASIEFRDSSEDSFLSAVINTNASTVHFKLSPTYR-YVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGAL 619 (1629)
T ss_pred cceecccCcHHHHHHHHHhCcccccccccCcccc-hhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 334566667777777776 444444444444431 222233332 44444 899999999999999998 667799
Q ss_pred hhHHHhHHHHHHHHHHHhhhcCCCCCCCCCCCCCccchhhhhhccCCCCCcchhhhhhhhhhhHhhhhccchhHHHHHHH
Q 001117 813 AYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQL 892 (1151)
Q Consensus 813 ~fWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~q~L 892 (1151)
+|||+|+++++||++++-..+ .+. +.-+..|
T Consensus 620 aFWmANaSEflhfik~Dr~ls--------------------------------~~~-----------------~~aq~vl 650 (1629)
T KOG1892|consen 620 AFWMANASEFLHFIKQDRDLS--------------------------------RIT-----------------LDAQDVL 650 (1629)
T ss_pred HHhhcCHHHHHHHHHhccchh--------------------------------hee-----------------hhHHHHH
Confidence 999999999999998852111 111 1122445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001117 893 AAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKI 972 (1151)
Q Consensus 893 ~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~ 972 (1151)
.-.|+-+|..|+.+++.+|++.+...+... ....+...++|.+|+..|.+|+.|+|+..|+.|+
T Consensus 651 a~~vq~aFr~LV~clqsel~~~~~afLden----------------~~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQL 714 (1629)
T KOG1892|consen 651 AHLVQMAFRYLVHCLQSELNNYMPAFLDEN----------------SLQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQL 714 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------------cccCccccchHHHhHHHHHHHHHhccchHHHHHH
Confidence 566888999999999999998886655311 1223467899999999999999999999999999
Q ss_pred HHHHHHhHHHHHhHhhhcc--cCccCCcchhHHHhchHHHHHHHhhcccccccccHHHhHHHHHHHhHHhhcccccCCHH
Q 001117 973 FTQTFSYINVQLFNSLLLR--RECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYD 1050 (1151)
Q Consensus 973 f~Qlf~~ina~lfN~Ll~r--~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~ 1050 (1151)
|+|||||||+++||+|+.. ..+|+--||--|++.|..||.||+..|++++++ |||..|+||++||+++|....|+.
T Consensus 715 fsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAd--CHL~ri~Qaa~lL~~~K~a~ddi~ 792 (1629)
T KOG1892|consen 715 FSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAAD--CHLSRIVQAATLLTMDKYAPDDIP 792 (1629)
T ss_pred HHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhh--ccHHHHHHHHHHHhccccChhhHH
Confidence 9999999999999999998 679999999999999999999999999998888 999999999999999988777777
Q ss_pred HHHhccCcCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHHhhhccCCC---CCC--CcccccCCCcccccccc
Q 001117 1051 EITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSND---ATS--NSFLLDDNSSIPFSVDD 1120 (1151)
Q Consensus 1051 ~i~~~~c~~L~~~Qi~kil~~Y~~d~~e~~~v~~~~i~~v~~~~~~~~~~---~~~--~~ll~D~~~~~Pf~~~~ 1120 (1151)
.+ ...|++||+.|+.+||..|++++.|+ ++|.+++..+..+....++. ++. -+|--+++..+||.+++
T Consensus 793 ~l-~stCfkLNSLQ~~alLq~~~~~~~e~-~~p~dlvd~v~r~AE~~ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 793 NL-NSTCFKLNSLQLQALLQNYHCAPDEP-FIPTDLVDNVVRVAENTADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred hh-ccchhhcchHHHHHHHhcCCCCCCCC-CCchHHHHHHHHHHHhhhhHhhhccCceeecccCcccccceeecC
Confidence 77 79999999999999999999999995 99999999998877665432 122 24666888889998888
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.95 E-value=8.6e-29 Score=235.25 Aligned_cols=105 Identities=36% Similarity=0.647 Sum_probs=88.6
Q ss_pred HHHHHHHHhHHHHHhHhhhcccCccCCcchhHHHhchHHHHHHHhhcccccccccHHHhHHHHHHHhHHhhcccccCCHH
Q 001117 971 KIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYD 1050 (1151)
Q Consensus 971 Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~ 1050 (1151)
|+|+|||||||+.+||+||.|+++|+|++|+|||+||+.||+||+++|++.+ ++++|.||+||++|||++|++..|.+
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999995433 68999999999999999765566555
Q ss_pred HHHhccCcCCCHHHHHHHHhcCccCCCC
Q 001117 1051 EITNDLCPILSVQQLYRICTLYWDDNYN 1078 (1151)
Q Consensus 1051 ~i~~~~c~~L~~~Qi~kil~~Y~~d~~e 1078 (1151)
.+ +++||+|||.||++||++|+||+||
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 55 7999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.21 E-value=2.7e-08 Score=131.79 Aligned_cols=205 Identities=14% Similarity=0.124 Sum_probs=110.5
Q ss_pred hhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHH---H-HHHHH
Q 001117 90 INLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET---F-AQKLY 165 (1151)
Q Consensus 90 iNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~---~-~~kl~ 165 (1151)
.++|=+-+....+..+|.. ...+...+++|. .+-..+|.+++-...-||.. ++=.+- | -+||.
T Consensus 413 ~~~~v~alAk~lYerlF~w-lV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~--------nSFEQLciNytnEkLQ 479 (1930)
T KOG0161|consen 413 VLFAVEALAKALYERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF--------NSFEQLCINYTNEKLQ 479 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cccCCcceeeeeccccccCc--------CCHHHHHHHHHHHHHH
Confidence 7888888888777777754 677888899986 45555665555433223322 110111 1 23444
Q ss_pred HHhcCCCCcCCCC----CCCCceEEEeeCcceEEeccchhhhhchhh--hHHHHHHHhhccCcccccccccchhhccCCC
Q 001117 166 QTFKNHKRFSKPK----LARSDFTICHYAGDVTYQTELFLDKNKDYV--VAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1151)
Q Consensus 166 ~~~~~~~~~~~p~----~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~--~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1151)
+-| +|.-|..-. --.-.++.-||+-+. =.+.+.|+|=...+ -++-.-+..+|...|+..|+.... ++.+
T Consensus 480 qfF-nh~mFvlEqeeY~~EgIew~fidfG~Dl-q~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~---gk~~ 554 (1930)
T KOG0161|consen 480 QFF-NHHMFVLEQEEYQREGIEWDFIDFGLDL-QPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQHL---GKHP 554 (1930)
T ss_pred hhh-cchhhhhhHHHHHHhCCceeeeccccch-hhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHhh---ccCc
Confidence 333 444454211 012356666773332 12334454433211 122222334555566655554321 1122
Q ss_pred CCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHHHH
Q 001117 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1151)
Q Consensus 240 ~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry 319 (1151)
+|.... ......-+....-+.+ |+|.-+|-..++..-.+..|+.+|++.+ .+.|..--.| +..++.+..++
T Consensus 555 ~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~ 625 (1930)
T KOG0161|consen 555 KFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGG 625 (1930)
T ss_pred cccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhh
Confidence 222211 2233333444444444 9999999999988888999999999999 7877765544 55555555555
Q ss_pred hh
Q 001117 320 GI 321 (1151)
Q Consensus 320 ~~ 321 (1151)
..
T Consensus 626 ~~ 627 (1930)
T KOG0161|consen 626 EA 627 (1930)
T ss_pred hh
Confidence 43
No 26
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.29 E-value=2.3e-06 Score=105.99 Aligned_cols=86 Identities=38% Similarity=0.517 Sum_probs=80.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHhhhh
Q 001117 423 EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQC 502 (1151)
Q Consensus 423 ~~AAi~IQ~~~R~~~~rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~ 502 (1151)
..+++.||+.+|+|..|+.|.++|.+++.+|+.+||..+|+ ... +..||+.||+.||++..|+.|+....+++.+|+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs 749 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS 749 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999 233 778999999999999999999999999999999
Q ss_pred hhhHHHHHH
Q 001117 503 AWRGKVARR 511 (1151)
Q Consensus 503 ~~R~~~arr 511 (1151)
.+|++.+|.
T Consensus 750 ~~r~~~~r~ 758 (862)
T KOG0160|consen 750 GVRAMLARN 758 (862)
T ss_pred HHHHHHhcc
Confidence 999999998
No 27
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.27 E-value=1.1e-06 Score=108.69 Aligned_cols=119 Identities=26% Similarity=0.293 Sum_probs=77.8
Q ss_pred ccchhHHHHHHHHhhhccchhhhchhhhhHhhhhHhhhhcchhhcccccc--------chhhhhHHHHHHHHHHHHHHHh
Q 001117 373 VLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRR--------EASCLRIQRDLRMYLAKKAYKD 444 (1151)
Q Consensus 373 ~l~~aa~~IQ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~--------~~AAi~IQ~~~R~~~~rk~y~~ 444 (1151)
....++..||.++|+|..|+.|.-+|.-++.||+.+||+..|+.|.++-. -.++.++|+.+|+|..+....+
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 34578899999999999999999999999999999999999999886541 1244455555555555555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001117 445 MCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYM 491 (1151)
Q Consensus 445 ~r~a~i~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~ 491 (1151)
.-.+++.||..+|-+..-++..+.+..+|++.||+.+|.+.++..|+
T Consensus 888 ~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyr 934 (975)
T KOG0520|consen 888 QETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYR 934 (975)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 54455555555555444333334444445555555555555554443
No 28
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.08 E-value=0.00067 Score=87.14 Aligned_cols=89 Identities=22% Similarity=0.175 Sum_probs=72.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHhhh-
Q 001117 423 EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQ- 501 (1151)
Q Consensus 423 ~~AAi~IQ~~~R~~~~rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ- 501 (1151)
..+++.||+.|||+..|++|.+.......+|...+|+..|+....-.-..++..+|..|+....|..|+.....+..+|
T Consensus 745 ~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~ 824 (1463)
T COG5022 745 DNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQK 824 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHH
Confidence 3688899999999999999999888888889988998888777666666788899999999999999988888888888
Q ss_pred hhhhHHHHHH
Q 001117 502 CAWRGKVARR 511 (1151)
Q Consensus 502 ~~~R~~~arr 511 (1151)
..+|....+.
T Consensus 825 ~i~~~~~~~~ 834 (1463)
T COG5022 825 TIKREKKLRE 834 (1463)
T ss_pred HHHHHHHHhH
Confidence 4555554443
No 29
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=97.98 E-value=2.9e-06 Score=107.74 Aligned_cols=216 Identities=15% Similarity=0.110 Sum_probs=170.7
Q ss_pred cchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHHHHhh
Q 001117 242 SSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGI 321 (1151)
Q Consensus 242 ~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~ 321 (1151)
+....++......++..+.-..|.|++|++-|..+....|+...|..|+++.|+++..++...+++..+++.+|..-+.+
T Consensus 789 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i 868 (1062)
T KOG4229|consen 789 PQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRI 868 (1062)
T ss_pred CccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccc
Confidence 33344666777889999999999999999999888888999999999999999999999999999999999999999998
Q ss_pred hhhccCCCCccHHHHHHHHHhh--cCCCCcccccceeeeecccccchhh-hhhhccchhHHHHHHHHhhhccchhhhchh
Q 001117 322 LASKVLDGSSDEVTACKRLLEK--VGLEGYQIGKTKVFLRAGQMADLDA-RRTEVLGRSASIIQRKVRSYLSRKNYIMLR 398 (1151)
Q Consensus 322 l~~~~~~~~~d~~~~~~~il~~--~~~~~~~~G~TkVFlr~~~~~~Le~-~R~~~l~~aa~~IQ~~~R~~l~Rk~y~~~r 398 (1151)
..|..... ........ .+.++++.|.+++|+...-...++. ...+....-+...|++++....++.|.++.
T Consensus 869 ~~~~~~~~------v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 942 (1062)
T KOG4229|consen 869 GLPETVDT------VADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLS 942 (1062)
T ss_pred cCCccchh------hchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhc
Confidence 87732211 11122221 2446899999999998765543322 222222212567899999999999999999
Q ss_pred hhhHhhhhHhhhhcchhhccc-cccchhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001117 399 RSAIHIQAACRGQLARTVYES-MRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNEL 465 (1151)
Q Consensus 399 ~a~i~IQ~~~Rg~lar~~~~~-~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~i~iQs~~Rg~~aR~~~ 465 (1151)
.+.+.+| |++++.|+.... .....+|+-+|..|+.+..+..+...+.+.+.+|..+++...+..+
T Consensus 943 ~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 943 EGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred chhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 9999999 899988876652 2345688899999999999999999999999999998887766555
No 30
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.91 E-value=0.015 Score=70.92 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 520 ARETGALQAAKNKLEKQVEELTWRLQ---LEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLM 584 (1151)
Q Consensus 520 a~~~~~L~~~~~~LE~kv~el~~rl~---~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~ 584 (1151)
..+...+++.+.+....+.+....++ .++++..+-.+....|++.+++++++|+..++-++++++
T Consensus 289 R~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 289 RKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555444333 345555555556667888888888888888887776554
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.73 E-value=5.1e-05 Score=94.34 Aligned_cols=116 Identities=24% Similarity=0.354 Sum_probs=91.6
Q ss_pred hhhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHHHHHHHHHhhhh----------HHHHHHHHHHHHHHHHHHHHH
Q 001117 399 RSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCF----------SAVCIQTGMRGMAARNELRFR 468 (1151)
Q Consensus 399 ~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~----------a~i~iQs~~Rg~~aR~~~~~~ 468 (1151)
.++..||..+|||..|+.+--.| .-++.||+.+|+|..|+.|.++-. ++..+|..+||+..|+..+..
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr--~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTR--QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccC--CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 46788888888888888887777 567888888899888888887644 455667778888777665443
Q ss_pred HHhhHHHHHHHHHHHHHHH--HHHHhhhhHHHhhhhhhhHHHHHHHHHHHHH
Q 001117 469 RQTRASILIQSHCRKYLAR--LHYMKLKKAAITTQCAWRGKVARRELRKLKM 518 (1151)
Q Consensus 469 r~~~aa~~IQ~~~R~~~~r--~~~~~~~~a~i~iQ~~~R~~~arr~l~~lk~ 518 (1151)
..||+.||..+|.|+.- ..|.++.++++.||+.+|-..++.+++++..
T Consensus 889 --~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 889 --ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33888999999999877 6678888999999999999988877776654
No 32
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0068 Score=72.68 Aligned_cols=101 Identities=25% Similarity=0.179 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 584 MKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQL 663 (1151)
Q Consensus 584 ~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l 663 (1151)
+.|+.+.+.++.+....++......++...|..+...|...+.+|..++.+.+-.+...+.+.+.+.+..+-.-.++.++
T Consensus 412 ewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~ql 491 (1118)
T KOG1029|consen 412 EWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQL 491 (1118)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444443322222222233333333333333333333333333333222222333333333333334455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001117 664 KTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 664 ~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+..++++++++..|--|.+.+
T Consensus 492 qarikE~q~kl~~l~~Ekq~l 512 (1118)
T KOG1029|consen 492 QARIKELQEKLQKLAPEKQEL 512 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 666666666555554444333
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.54 E-value=0.022 Score=71.48 Aligned_cols=32 Identities=9% Similarity=0.207 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001117 565 LQSALQEMQLQFKESKEKLMKEIEVAKKEAEK 596 (1151)
Q Consensus 565 L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee 596 (1151)
++.+..+||.++.++..++....++...+..+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~ 574 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESE 574 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777777766666555555555443
No 34
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.30 E-value=0.046 Score=54.90 Aligned_cols=124 Identities=23% Similarity=0.252 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 001117 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVP 604 (1151)
Q Consensus 525 ~L~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~ 604 (1151)
........++.++.++..+.. .+..++..|+..+..++.+++.++..+............
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~--------- 70 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK--------- 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------
Confidence 344555667777777766655 566788888888888888888887766433322211110
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 605 VIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL 670 (1151)
Q Consensus 605 ~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~L 670 (1151)
.....+.|...+.-|+++++.....+.+...++.++.....+...++..++.....++..+..|
T Consensus 71 --~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 71 --RKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred --HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0112234445555555555555555555444444444444433333333333333333333333
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.26 E-value=0.077 Score=63.77 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1151)
++.+.....+|.....+++..+.+++...
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~ 200 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLL 200 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333333
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.20 E-value=1.1 Score=57.33 Aligned_cols=14 Identities=0% Similarity=0.128 Sum_probs=9.2
Q ss_pred cHHHHHHHHHhhcC
Q 001117 332 DEVTACKRLLEKVG 345 (1151)
Q Consensus 332 d~~~~~~~il~~~~ 345 (1151)
..|+-...+++.++
T Consensus 159 tKk~dl~~vv~~f~ 172 (1074)
T KOG0250|consen 159 TKKEDLDTVVDHFN 172 (1074)
T ss_pred ccHHHHHHHHHHhC
Confidence 34666777777664
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.18 E-value=0.67 Score=63.25 Aligned_cols=8 Identities=38% Similarity=0.858 Sum_probs=3.2
Q ss_pred cccCCccc
Q 001117 73 DIYGFESF 80 (1151)
Q Consensus 73 Di~GFE~f 80 (1151)
.|.||-+|
T Consensus 6 ~l~nf~s~ 13 (1164)
T TIGR02169 6 ELENFKSF 13 (1164)
T ss_pred EEeCeeeE
Confidence 34444433
No 38
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.82 Score=58.57 Aligned_cols=47 Identities=26% Similarity=0.220 Sum_probs=34.5
Q ss_pred HHHhHHHHHHHhHHhhcccccCCHHHHHhccC---cCCCHHHHHHHHhcCccC
Q 001117 1026 WDELKHIRQAVGFLVIHQKYRISYDEITNDLC---PILSVQQLYRICTLYWDD 1075 (1151)
Q Consensus 1026 ~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~c---~~L~~~Qi~kil~~Y~~d 1075 (1151)
.+.|.|..+-+.|-|.| ++.+...| ..+. -.||+.=|.=-|.+|+|.
T Consensus 1169 VDslDPFseGV~FSVrP--pKKSWK~I-~NLSGGEKTLSSLALVFALH~YkPT 1218 (1293)
T KOG0996|consen 1169 VDSLDPFSEGVMFSVRP--PKKSWKNI-SNLSGGEKTLSSLALVFALHHYKPT 1218 (1293)
T ss_pred eccCCCcccCceEEeeC--chhhhhhc-ccCCcchhHHHHHHHHHHHHccCCC
Confidence 56788888888888877 66666655 2332 378888888889999875
No 39
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.48 Score=57.59 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=17.6
Q ss_pred ccCccCCcchhHHHhchHHHHHHHh
Q 001117 991 RRECCTFSNGEYVKAGLAELELWCC 1015 (1151)
Q Consensus 991 r~~~cs~s~G~qIr~nls~Le~W~~ 1015 (1151)
.++-.-|--|.-+.-+=-+.--|+=
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GWFP 1032 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGWFP 1032 (1118)
T ss_pred ecCCCccchhhHhhcCCcccccccc
Confidence 4677778888877777666666653
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.04 E-value=0.091 Score=66.05 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 662 QLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
+.+++++-++..+...+.|+..|+++
T Consensus 626 ~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 626 DAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777777773
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.96 E-value=0.52 Score=64.25 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 649 l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+...+....+++.+++.++.+++.++..++.+++.+++
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555666666666665555555544
No 42
>PRK11637 AmiB activator; Provisional
Probab=96.93 E-value=0.32 Score=58.45 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
...|...+..++....+++..+.+++.+..+++....+....+..++......+.++.+|+....+++..+.
T Consensus 179 ~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 179 REELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444444444444444333333333333333333333444433333333333
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.89 E-value=0.34 Score=52.52 Aligned_cols=51 Identities=22% Similarity=0.202 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES 658 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~ 658 (1151)
....+.|+.+...++.+...|+.++.++..+.+++.+....+..++...+.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666776666666666666666666666555555544444443333
No 44
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.85 E-value=0.24 Score=61.07 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=19.4
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCHHH
Q 001117 942 SSHWQSIIDSLNTLLSTLKQNFVPPVL 968 (1151)
Q Consensus 942 ~~~~~~il~~L~~~~~~l~~~~v~~~l 968 (1151)
..++...+..+|+.+..+....++++.
T Consensus 898 ~~~lr~sleq~nstl~ll~~~~~~~Ey 924 (1243)
T KOG0971|consen 898 YECLRQSLEQLNSTLNLLATAMQEGEY 924 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 446788888888888888766655543
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=1.4 Score=56.57 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=6.2
Q ss_pred HHHHHHHhhcCC
Q 001117 335 TACKRLLEKVGL 346 (1151)
Q Consensus 335 ~~~~~il~~~~~ 346 (1151)
..+..+|...|+
T Consensus 209 ~~V~~lLk~~gI 220 (1293)
T KOG0996|consen 209 KDVTKLLKSHGI 220 (1293)
T ss_pred HHHHHHHHhcCC
Confidence 345556655544
No 46
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.80 E-value=0.89 Score=62.04 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=20.0
Q ss_pred cCCccccccccCcHHHHHHhhcCCcchhHhhHhhh
Q 001117 116 EAINWSYIEFVDNQDILDLIEKKPGGIIALLDEAC 150 (1151)
Q Consensus 116 E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~ 150 (1151)
-||.-....|..-..+-.++..+|...+.++|+..
T Consensus 131 ~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 165 (1179)
T TIGR02168 131 TGLGKRSYSIIEQGKISEIIEAKPEERRAIFEEAA 165 (1179)
T ss_pred cCCCcccchheecccHHHHHcCCHHHHHHHHHHHc
Confidence 45543333344333455566667777778887754
No 47
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.77 E-value=0.0013 Score=43.11 Aligned_cols=20 Identities=45% Similarity=0.605 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 001117 424 ASCLRIQRDLRMYLAKKAYK 443 (1151)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~ 443 (1151)
.||++||++||||.+|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46777777777777777763
No 48
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.76 E-value=0.0079 Score=71.76 Aligned_cols=62 Identities=23% Similarity=0.161 Sum_probs=51.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 001117 422 REASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKL 493 (1151)
Q Consensus 422 ~~~AAi~IQ~~~R~~~~rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~ 493 (1151)
...-++.||+.||||.+|.+|++++.+++.|+ ++|.+.. ...+..||+.+|++..++.|.+-
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~---------ks~v~el~~~~rg~k~~r~ygk~ 756 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKL---------KSYVQELQRRFRGAKQMRDYGKS 756 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---------HHHHHHHHHHHHhhhhccccCCC
Confidence 44678999999999999999999999999998 7774432 23566789999999999998653
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.75 E-value=2.4 Score=57.90 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=4.4
Q ss_pred HHHHHhhcCC
Q 001117 337 CKRLLEKVGL 346 (1151)
Q Consensus 337 ~~~il~~~~~ 346 (1151)
+..+|..+++
T Consensus 124 ~~~~l~~~~i 133 (1179)
T TIGR02168 124 IQDLFLDTGL 133 (1179)
T ss_pred HHHHHhccCC
Confidence 3444544443
No 50
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.25 Score=61.91 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1151)
+.++.+|+++...+++++++.....+.-+.
T Consensus 786 e~rlkdl~keik~~k~~~e~~~~~~ek~~~ 815 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAEESSKELEKREN 815 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666555555443333
No 51
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.70 E-value=0.5 Score=51.99 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 643 SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 643 ~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+.....+..++.+++......+..+..|+..+..|+.++...+
T Consensus 175 e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 175 EEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444445555555555555555554443
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=1.8 Score=54.73 Aligned_cols=13 Identities=38% Similarity=0.823 Sum_probs=8.2
Q ss_pred CCcchhHhhHhhh
Q 001117 138 KPGGIIALLDEAC 150 (1151)
Q Consensus 138 ~~~Gil~lLdee~ 150 (1151)
||.-|++++.|..
T Consensus 157 Kp~EILsMvEEAA 169 (1174)
T KOG0933|consen 157 KPSEILSMVEEAA 169 (1174)
T ss_pred CcHHHHHHHHHhh
Confidence 4557777776653
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.64 E-value=3.7 Score=52.87 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
..+.+..+..|..+++.++..+..+..+..+...++...+++....+.++..+..+++.-..++..++
T Consensus 396 ~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 396 LEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333444444444444444444443
No 54
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.55 E-value=3.8 Score=55.72 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=7.3
Q ss_pred cchhhhHHHHhcCCC
Q 001117 293 GGVMEAIRISCAGYP 307 (1151)
Q Consensus 293 ~gvle~iri~~~Gyp 307 (1151)
-|+..+......|+|
T Consensus 501 ~~~~~~~~~~~~~~~ 515 (1163)
T COG1196 501 QGVRAVLEALESGLP 515 (1163)
T ss_pred hhHHHHHHHHhccCC
Confidence 344445555555443
No 55
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.52 E-value=0.88 Score=48.37 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001117 666 AMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 666 ~~~~Le~~l~~Le~E~~ 682 (1151)
.+.+|+++...|..|+.
T Consensus 165 svqRLkdEardlrqela 181 (333)
T KOG1853|consen 165 SVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.51 E-value=0.33 Score=58.34 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001117 525 ALQAAKNKLEKQVEELTWRLQ 545 (1151)
Q Consensus 525 ~L~~~~~~LE~kv~el~~rl~ 545 (1151)
.|+.....|+.++.+++..|.
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555444444
No 57
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.47 E-value=0.55 Score=48.59 Aligned_cols=29 Identities=34% Similarity=0.368 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1151)
..+..|..++.++....+.+.++..++-.
T Consensus 102 ~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 102 AEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 34555666666666666555555555433
No 58
>PRK02224 chromosome segregation protein; Provisional
Probab=96.46 E-value=0.2 Score=66.15 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+.+.+..+..++.++..+++....+++++..+
T Consensus 601 i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 632 (880)
T PRK02224 601 IADAEDEIERLREKREALAELNDERRERLAEK 632 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 59
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.44 E-value=0.51 Score=56.81 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 522 ETGALQAAKNKLEKQVEELTWRLQ 545 (1151)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~rl~ 545 (1151)
+.+.|.+.+..|+.++..++.+++
T Consensus 151 E~eeL~~~~~~Le~e~~~l~~~v~ 174 (546)
T PF07888_consen 151 EKEELLKENEQLEEEVEQLREEVE 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555544444333
No 60
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.38 E-value=0.13 Score=56.62 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 560 QENAKLQSALQEMQLQFKESKE 581 (1151)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~ 581 (1151)
.++..|...+..++..++..+.
T Consensus 36 ~e~~~l~rri~~lE~~le~~ee 57 (237)
T PF00261_consen 36 AEVASLQRRIQLLEEELERAEE 57 (237)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3444455555555444444443
No 61
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.35 E-value=0.76 Score=46.27 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=26.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 627 ~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
.+..++.-++..+...+....+...++.++..+..++++.+..|+.+....+..++.+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333334444444444444444444444444444445555555555444444444444
No 62
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.27 E-value=1.8 Score=50.51 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 560 QENAKLQSALQEMQLQFKESKEKL 583 (1151)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~~l 583 (1151)
.+..++.+++.+++..+..++.+.
T Consensus 87 ~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 87 DDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344556666666666666655543
No 63
>PRK02224 chromosome segregation protein; Provisional
Probab=96.26 E-value=2.7 Score=55.66 Aligned_cols=7 Identities=29% Similarity=0.942 Sum_probs=3.2
Q ss_pred eeeeccc
Q 001117 356 VFLRAGQ 362 (1151)
Q Consensus 356 VFlr~~~ 362 (1151)
||+..|.
T Consensus 133 ~~i~Qge 139 (880)
T PRK02224 133 AYVRQGE 139 (880)
T ss_pred eEeeccC
Confidence 4444443
No 64
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.24 E-value=0.68 Score=57.54 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
...++.....+..|++.+.+++..+-.+.....++...+........++.+++.+++.++..+++++....+|+..+++
T Consensus 152 k~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 152 KATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4456677777888888888887776666555544444333333333455666666777777777777776666666655
No 65
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.23 E-value=3.5 Score=49.90 Aligned_cols=13 Identities=54% Similarity=0.516 Sum_probs=10.4
Q ss_pred CcccccccccCCc
Q 001117 66 KSLIGVLDIYGFE 78 (1151)
Q Consensus 66 ~~~IgvLDi~GFE 78 (1151)
.+.+|+|||-|=+
T Consensus 9 ~sl~~~lDiq~~~ 21 (961)
T KOG4673|consen 9 VSLGGFLDIQGAV 21 (961)
T ss_pred hhhcccccccccc
Confidence 5678999998865
No 66
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.23 E-value=2.7 Score=51.25 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 001117 432 DLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLK 494 (1151)
Q Consensus 432 ~~R~~~~rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~ 494 (1151)
.+..|+.+.+|.+...++..+-.. +.+. .-+..+.+++|++.|||++|+++....
T Consensus 782 kVn~WLv~sRWkk~q~~a~sVIKL------kNkI--~yRae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 782 KVNKWLVRSRWKKSQYGALSVIKL------KNKI--IYRAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHHHHHhHHHHhhhhhhheeeh------hhHH--HHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 357788888888766544332111 1111 112346778899999999998886643
No 67
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.22 E-value=0.053 Score=70.10 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-----
Q 001117 428 RIQRDLRMYLAKKAYKD-------MCFSAVCIQTGMRGMAA--RNELRFRRQTRASILIQSHCRKYLARLHYMKL----- 493 (1151)
Q Consensus 428 ~IQ~~~R~~~~rk~y~~-------~r~a~i~iQs~~Rg~~a--R~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~----- 493 (1151)
++|+..||+..|..+.. .-+....+|+.+||+.. -+.....-....++.+|++.|++..|+.|.+.
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~ 619 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFK 619 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34666676666555432 23456667777777762 22222223344566777777777777665443
Q ss_pred --hhHHHhhhhhhhHHHHHHHHHHHHH
Q 001117 494 --KKAAITTQCAWRGKVARRELRKLKM 518 (1151)
Q Consensus 494 --~~a~i~iQ~~~R~~~arr~l~~lk~ 518 (1151)
..+.+.+|+..|....|..++.+.-
T Consensus 620 ~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 620 DNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred HhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 3566777777777777777766553
No 68
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.22 E-value=0.064 Score=69.38 Aligned_cols=114 Identities=26% Similarity=0.283 Sum_probs=83.1
Q ss_pred HHHHHhhhccchhhhch-----hhhhHhhhhHhhhhcchhhccc----cc-cchhhhhHHHHHHHHHH----HHHHHhhh
Q 001117 381 IQRKVRSYLSRKNYIML-----RRSAIHIQAACRGQLARTVYES----MR-REASCLRIQRDLRMYLA----KKAYKDMC 446 (1151)
Q Consensus 381 IQ~~~R~~l~Rk~y~~~-----r~a~i~IQ~~~Rg~lar~~~~~----~r-~~~AAi~IQ~~~R~~~~----rk~y~~~r 446 (1151)
.|+-+||...|..--.+ ..-...+|+.+||+..|..+.. ++ .......||..|||+.. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 56667776665532111 1223445999999998876653 22 45678899999999984 33344556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHhhh
Q 001117 447 FSAVCIQTGMRGMAARNELRFRR-----QTRASILIQSHCRKYLARLHYMKLK 494 (1151)
Q Consensus 447 ~a~i~iQs~~Rg~~aR~~~~~~r-----~~~aa~~IQ~~~R~~~~r~~~~~~~ 494 (1151)
.-++.+|+..||+.+|+.+.... ...+.+.||++.|....|..|..+.
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 78899999999999998885443 3467889999999999999998875
No 69
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.20 E-value=0.0064 Score=39.77 Aligned_cols=19 Identities=58% Similarity=0.833 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 001117 472 RASILIQSHCRKYLARLHY 490 (1151)
Q Consensus 472 ~aa~~IQ~~~R~~~~r~~~ 490 (1151)
++|+.||++||||.+|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4666777777777777665
No 70
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.15 E-value=2 Score=44.55 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 659 KIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 659 ~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
.+..+..-..+|+.++.+|++.+
T Consensus 166 ~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 166 TIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 71
>PRK09039 hypothetical protein; Validated
Probab=96.14 E-value=0.44 Score=55.29 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 523 TGALQAAKNKLEKQVEELTWRLQLEKRMRV 552 (1151)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~rl~~e~~~~~ 552 (1151)
+..+.+...+|+.++.++..-+..+.....
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~ 77 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQ 77 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566667777776666665544433
No 72
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.99 E-value=0.75 Score=57.46 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1151)
...+..+......++.++..++..+.+++.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~ 327 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEE 327 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666655554433
No 73
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.92 E-value=2.8 Score=53.00 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 524 GALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKE 581 (1151)
Q Consensus 524 ~~L~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~ 581 (1151)
.+|......+|+++.-|++.++ +|....-.++.++++++.++++++.
T Consensus 173 ~hL~velAdle~kir~LrqElE-----------EK~enll~lr~eLddleae~~klrq 219 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELE-----------EKFENLLRLRNELDDLEAEISKLRQ 219 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667777766665555 2333334455555555555555544
No 74
>PRK03918 chromosome segregation protein; Provisional
Probab=95.87 E-value=0.73 Score=60.93 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
+..++..+..+...+..++.++..++.+++.
T Consensus 668 ~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~ 698 (880)
T PRK03918 668 YLELSRELAGLRAELEELEKRREEIKKTLEK 698 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444333
No 75
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.85 E-value=1.6 Score=50.32 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE----EKVSDMETENQI 683 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le----~~l~~Le~E~~~ 683 (1151)
.+++..+..+...++..+...++.+.+++.++.++....+++..+..+++..+.++++....-+ .++.+|+.+.+.
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555444444444444444444444433333221 255666666666
Q ss_pred HHH
Q 001117 684 LRQ 686 (1151)
Q Consensus 684 lrq 686 (1151)
++.
T Consensus 288 Le~ 290 (325)
T PF08317_consen 288 LEK 290 (325)
T ss_pred HHH
Confidence 665
No 76
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.84 E-value=1.9 Score=53.85 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=19.6
Q ss_pred HHHHHHHhHHhhcccccCCHHH-HHhccCcCCCHHHHHHHH
Q 001117 1030 KHIRQAVGFLVIHQKYRISYDE-ITNDLCPILSVQQLYRIC 1069 (1151)
Q Consensus 1030 ~~i~Qa~~lLq~~kk~~~~~~~-i~~~~c~~L~~~Qi~kil 1069 (1151)
..++.|++-++.. ....++ |++.-==+=+++||..-.
T Consensus 850 tvLVeaAdkvV~~---~gkfEeLIVas~EIAAsTaQLVaAS 887 (980)
T KOG0980|consen 850 TVLVEAADKVVTG---TGKFEELIVASQEIAASTAQLVAAS 887 (980)
T ss_pred HHHHHHhhhHhcC---CCCcHHHHHhhhHHHHHHHHHHHHH
Confidence 4567777777765 222333 322111256677877544
No 77
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.76 E-value=2.6 Score=43.66 Aligned_cols=77 Identities=23% Similarity=0.231 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+.++..|..+...+.+.+..+...-+.+..+....+.....+..++.+++..-...++.++.|+..+.+|+..+...
T Consensus 108 Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~ 184 (205)
T KOG1003|consen 108 ESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEA 184 (205)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHH
Confidence 33444555555555555555555544444444444444444444444444333344444444444444444444333
No 78
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.63 E-value=2.4 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+.+.-.|+++.++-+.++-..||
T Consensus 489 ~~EqefLslqeEfQk~ekenl~ERq 513 (527)
T PF15066_consen 489 TREQEFLSLQEEFQKHEKENLEERQ 513 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444444555555555555555544
No 79
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.63 E-value=3 Score=51.23 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 649 l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++.+..+++.+..-|..++.+-++.+..++++++.++|
T Consensus 268 ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 268 IEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333344444455666666666666777777777766
No 80
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.58 E-value=4.1 Score=49.33 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA----ESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~----~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
.|.......+..|+.++.+++.....+++....+.-++.+. +..+.....++.+|.+++..+-.|++.|-
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555556666666666666655555555555555444332 34445566666666666666666666553
No 81
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.58 E-value=4.6 Score=46.54 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 001117 613 ELTSENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ 633 (1151)
+|..+..+..+.++.++.++.
T Consensus 329 klaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 329 KLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHhhhhhhHHHHHHHHHHHHH
Confidence 333444444444444444443
No 82
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.49 E-value=16 Score=49.91 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=16.7
Q ss_pred HHhcCccCCCCCCCCCHH-HHHHHHHhhh
Q 001117 1068 ICTLYWDDNYNTRSVSPN-VISSMRILMT 1095 (1151)
Q Consensus 1068 il~~Y~~d~~e~~~v~~~-~i~~v~~~~~ 1095 (1151)
....|+..+.. ..||++ ++..|+.++.
T Consensus 1054 ~~~~w~~~~~~-~~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1054 EYELWRSSDGS-RELPSEEYVNALRELLD 1081 (1201)
T ss_pred HHHHHhcccCc-ccCCCHHHHHHHHHHHH
Confidence 44455433333 368888 8888877654
No 83
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.49 E-value=3.5 Score=52.20 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=11.1
Q ss_pred cccCCccccCCchhhh
Q 001117 73 DIYGFESFKTNSFEQF 88 (1151)
Q Consensus 73 Di~GFE~f~~Nsfeql 88 (1151)
|+-|=+.+..|+-+++
T Consensus 30 ~~lg~~p~s~ng~e~i 45 (1195)
T KOG4643|consen 30 DMLGSTPSSSNGEEAI 45 (1195)
T ss_pred hhhccCccccchHHHH
Confidence 4667777777877665
No 84
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.44 E-value=5.3 Score=43.95 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq~ 688 (1151)
.+.+....+.+.+|+++|..|+.|.+.|+.+.
T Consensus 192 ~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 192 QKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566778888888888888888888887654
No 85
>PRK09039 hypothetical protein; Validated
Probab=95.44 E-value=1.8 Score=50.28 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 001117 533 LEKQVEELTWRL 544 (1151)
Q Consensus 533 LE~kv~el~~rl 544 (1151)
++.++.+++.++
T Consensus 79 l~~~l~~l~~~l 90 (343)
T PRK09039 79 LQDSVANLRASL 90 (343)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 86
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.39 E-value=17 Score=49.63 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=8.7
Q ss_pred hhhchhhhhHhhhhHhhhh
Q 001117 393 NYIMLRRSAIHIQAACRGQ 411 (1151)
Q Consensus 393 ~y~~~r~a~i~IQ~~~Rg~ 411 (1151)
.+...+..+..++..++..
T Consensus 240 ~~~~~r~~~~~l~~~~~~l 258 (1201)
T PF12128_consen 240 GFEKVRPEFDKLQQQYRQL 258 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444455555444433
No 87
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.34 E-value=13 Score=47.90 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
-+..+.+...++..|+.+++.
T Consensus 1722 ~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1722 NEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred hhHHHHHHHHHhhhHHHHHHH
Confidence 333444444444444444443
No 88
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.30 E-value=0.014 Score=40.47 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=16.3
Q ss_pred chhhhhHHHHHHHHHHHHHHH
Q 001117 423 EASCLRIQRDLRMYLAKKAYK 443 (1151)
Q Consensus 423 ~~AAi~IQ~~~R~~~~rk~y~ 443 (1151)
..+|++||++||||.+|+.|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 357888888888888888773
No 89
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.26 E-value=3.2 Score=51.78 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=5.9
Q ss_pred hhhhHHHHhcCCC
Q 001117 295 VMEAIRISCAGYP 307 (1151)
Q Consensus 295 vle~iri~~~Gyp 307 (1151)
++++|...-.|-|
T Consensus 43 ll~aI~~~l~G~~ 55 (562)
T PHA02562 43 MLEALTFALFGKP 55 (562)
T ss_pred HHHHHHHHHcCCC
Confidence 4445544444433
No 90
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.26 E-value=2.7 Score=57.58 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 642 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
++........++.+.+.++..++.++..++..++.++.....+.
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~ 483 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVR 483 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555555555554443
No 91
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=5.8 Score=43.72 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETS 643 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~ 643 (1151)
.++....+...|+..=..+++.++.+..-..+++
T Consensus 149 ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e 182 (265)
T COG3883 149 ILEQQKEDKKSLEEKQAALEDKLETLVALQNELE 182 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333333
No 92
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.03 E-value=2.3 Score=42.34 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 001117 616 SENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ 633 (1151)
+++..|.+.+...+.++.
T Consensus 80 sEk~~L~k~lq~~q~kv~ 97 (140)
T PF10473_consen 80 SEKENLDKELQKKQEKVS 97 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 93
>PRK03918 chromosome segregation protein; Provisional
Probab=94.93 E-value=6.7 Score=51.91 Aligned_cols=15 Identities=7% Similarity=-0.011 Sum_probs=7.8
Q ss_pred CCCHHHHHHHHHhhh
Q 001117 1081 SVSPNVISSMRILMT 1095 (1151)
Q Consensus 1081 ~v~~~~i~~v~~~~~ 1095 (1151)
++++.....+...+.
T Consensus 824 ~lD~~~~~~l~~~l~ 838 (880)
T PRK03918 824 FLDEERRRKLVDIME 838 (880)
T ss_pred ccCHHHHHHHHHHHH
Confidence 455655555554443
No 94
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.93 E-value=1.5 Score=43.50 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
...-..+++++.+++.++.+|...|..|-+|
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334557777777777777777777766543
No 95
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.89 E-value=14 Score=47.68 Aligned_cols=33 Identities=24% Similarity=0.542 Sum_probs=23.3
Q ss_pred ccc-cccccccccccccccCCCcchhhhcCccccccc
Q 001117 1114 IPF-SVDDLSNSLQEKDFLDVKAAEELLENPAFEFLY 1149 (1151)
Q Consensus 1114 ~Pf-~~~~~~~~~~~~~~~~i~~p~~l~~~~~~~~~~ 1149 (1151)
-|| .+++|...+|+.++.-| .+.++ ++.|||+.
T Consensus 1074 aPFfvlDEiDAALDntNi~kv--asyIr-~~~~Q~Iv 1107 (1141)
T KOG0018|consen 1074 APFFVLDEIDAALDNTNIGKV--ASYIR-SSNFQFIV 1107 (1141)
T ss_pred CCceehhhHHHHhhhccHHHH--HHHHh-cCCceEEE
Confidence 455 66678778888777765 45666 88899874
No 96
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.86 E-value=8 Score=53.40 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 521 RETGALQAAKNKLEKQVEELTWRL 544 (1151)
Q Consensus 521 ~~~~~L~~~~~~LE~kv~el~~rl 544 (1151)
.+.+.++.....++.++.+|+.++
T Consensus 843 ~~~e~l~~e~e~~~~eI~~Lq~ki 866 (1311)
T TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKT 866 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554433
No 97
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.82 E-value=3.6 Score=47.50 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 001117 666 AMHRLEEKVSDME 678 (1151)
Q Consensus 666 ~~~~Le~~l~~Le 678 (1151)
++.+|+.++..|+
T Consensus 277 Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 277 EVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 98
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.77 E-value=7.4 Score=43.43 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES-----------KIVQLKTAMHRLEEKVSD 676 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~-----------~~~~l~~~~~~Le~~l~~ 676 (1151)
+..+.++..|+..|+-.++++..+..+.+++...+.++..+.......+.+ -++.-+.-+..|+.++++
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Confidence 345667777888888888888777777776666665555554433222211 123445566667777777
Q ss_pred HHHHHHHHHH
Q 001117 677 METENQILRQ 686 (1151)
Q Consensus 677 Le~E~~~lrq 686 (1151)
|--|+.++=|
T Consensus 213 Lm~EirnLLQ 222 (401)
T PF06785_consen 213 LMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 99
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.72 E-value=5.1 Score=39.99 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 001117 614 LTSENEKLKTLVSSLEKKIDETEK 637 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~ 637 (1151)
|.++..+.+..+.+|+........
T Consensus 85 L~k~lq~~q~kv~eLE~~~~~~~~ 108 (140)
T PF10473_consen 85 LDKELQKKQEKVSELESLNSSLEN 108 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333333444444444444433333
No 100
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.71 E-value=9.9 Score=43.28 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 660 IVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 660 ~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+..-++++++||.....||.|...+
T Consensus 254 I~~re~~lq~lEt~q~~leqeva~l 278 (499)
T COG4372 254 IRERERQLQRLETAQARLEQEVAQL 278 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 101
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.66 E-value=7.2 Score=41.41 Aligned_cols=67 Identities=25% Similarity=0.321 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
++|......++..+++....+..++..++-..+ ....++.....+...++.++..|+.++..|...+
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k---~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENK---SFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555554444444444443321111 1112233333344444444444444444444433
No 102
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.59 E-value=14 Score=44.53 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001117 520 ARETGALQAAKNKLEKQV 537 (1151)
Q Consensus 520 a~~~~~L~~~~~~LE~kv 537 (1151)
+.+++.|+....+|.++|
T Consensus 307 EeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555544
No 103
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.53 E-value=18 Score=45.58 Aligned_cols=12 Identities=33% Similarity=0.207 Sum_probs=8.9
Q ss_pred cCcCCCHHHHHH
Q 001117 1056 LCPILSVQQLYR 1067 (1151)
Q Consensus 1056 ~c~~L~~~Qi~k 1067 (1151)
.++.||+.||.+
T Consensus 933 DFS~ls~h~~K~ 944 (980)
T KOG0980|consen 933 DFSSLSLHQLKT 944 (980)
T ss_pred ccccccHHHHHH
Confidence 467888888765
No 104
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.46 E-value=0.019 Score=39.76 Aligned_cols=20 Identities=55% Similarity=0.773 Sum_probs=11.9
Q ss_pred chhHHHHHHHHhhhccchhh
Q 001117 375 GRSASIIQRKVRSYLSRKNY 394 (1151)
Q Consensus 375 ~~aa~~IQ~~~R~~l~Rk~y 394 (1151)
..+++.||+.||||++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34556666666666666655
No 105
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.44 E-value=11 Score=42.52 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD-------METENQIL 684 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~-------Le~E~~~l 684 (1151)
..-..+....+.++..|..++-+++.+....-.+.+++...+......-..|..++.+|+++-.+ .++|+..+
T Consensus 223 a~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 223 ARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555566666666666666666666666666666665555555566666666655444 55666555
Q ss_pred HH
Q 001117 685 RQ 686 (1151)
Q Consensus 685 rq 686 (1151)
|+
T Consensus 303 R~ 304 (306)
T PF04849_consen 303 RK 304 (306)
T ss_pred hC
Confidence 54
No 106
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.39 E-value=1.6 Score=48.92 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le 678 (1151)
..|..+...++..+..+-.+.+++...+...+..-..+..++.+++.+..+....+.+.++++..++
T Consensus 237 t~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 237 TSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444444444444444444444444555555556666555555555666555544
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.38 E-value=9.4 Score=48.63 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
++...+..+..++.++..++.++..++.++.
T Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 436 ELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444443
No 108
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.33 E-value=5.5 Score=45.53 Aligned_cols=14 Identities=7% Similarity=0.420 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 001117 673 KVSDMETENQILRQ 686 (1151)
Q Consensus 673 ~l~~Le~E~~~lrq 686 (1151)
++..|+...+.+++
T Consensus 272 Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 272 EIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555666666655
No 109
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.32 E-value=8.5 Score=40.85 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
...+........+++..+..+.+|+..+++
T Consensus 156 ~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 156 RRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777777777766
No 110
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.27 E-value=2.6 Score=49.48 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.....++.+|..++-++.+++..+..+.+++...+......-.+.+.+..+++.+..+..+.+.+-++|++.++.
T Consensus 229 ~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 229 SRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444455666666666666666555544444443333333333344555666777777777778888888888875
No 111
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.26 E-value=5.3 Score=50.94 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001117 557 AKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEK 596 (1151)
Q Consensus 557 ~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee 596 (1151)
++.++.+.|+.+++.|..+++.....+.+....+..+.++
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE 372 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEE 372 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666655554444444444433
No 112
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=21 Score=44.74 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+.++...+...+....+...+.......+....++..+++++.+..+.....++..+..+...+++|++.++.
T Consensus 541 ~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~ 615 (698)
T KOG0978|consen 541 SKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKR 615 (698)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444445555555555555555555555566666666666666666666655
No 113
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=12 Score=46.72 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq~ 688 (1151)
+..|+.+...+......+.+++.-....++...+...++...++.++......+.++++++..+.+++.+++.++++.
T Consensus 526 i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~ 603 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKR 603 (698)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444455555555555566666666677777777777777777777777776643
No 114
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.11 E-value=12 Score=45.49 Aligned_cols=147 Identities=19% Similarity=0.196 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH-HHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 001117 518 MAARETGALQAAKNKLEKQVEELTWRLQ-----------LEK-RMRVDMEEA------KTQENAKLQSALQEMQLQFKES 579 (1151)
Q Consensus 518 ~~a~~~~~L~~~~~~LE~kv~el~~rl~-----------~e~-~~~~~le~~------~~~e~~~L~~~l~~le~~l~~~ 579 (1151)
..-+.+..|..++..|+..+..++.... .|. ..+..+++. ...++.+|+.++++++..+++.
T Consensus 53 ~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 53 VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3345555666667777777766653332 111 112222111 1133444555555555555444
Q ss_pred HHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 580 KEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK 659 (1151)
Q Consensus 580 ~~~l~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~ 659 (1151)
........++... ....+.+++.+..-++..+..++.++..+..+...+...+..+.+.++++--.
T Consensus 133 ~k~~~~~re~~~~--------------~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll 198 (546)
T KOG0977|consen 133 EKERRGAREKLDD--------------YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLL 198 (546)
T ss_pred HHHHhhhHHHHHH--------------HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4333222222211 12344555555555555555555555555555555544444444445444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 660 IVQLKTAMHRLEEKVSDME 678 (1151)
Q Consensus 660 ~~~l~~~~~~Le~~l~~Le 678 (1151)
-.+++..++.|.+++.-+.
T Consensus 199 r~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 199 RVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 4555666666666555554
No 115
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.09 E-value=1.3 Score=47.96 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001117 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1151)
Q Consensus 621 Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq~l 689 (1151)
|+.+...|.+..+.+++...++..+...-..++.-++.++....+.++.|+.++..++.|++..++.+.
T Consensus 65 LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 65 LKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333333344444444444444444444455566777777778888888888888888888777443
No 116
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.03 E-value=5.8 Score=44.16 Aligned_cols=52 Identities=33% Similarity=0.305 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 635 le~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.++.+++.+.+.+.+..+++..++...-+.+++..|++-+..++...+.++-
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 3444555555555566666666666667788888888888888887776653
No 117
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.93 E-value=11 Score=40.53 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 001117 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR---LEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~---Le~~l~~Le~E~~~lrqq 687 (1151)
.+..|...+.+|+...+.+|..........++..+++..+-+.+.-|+.++.+ |-+.+++|++|-..|+|.
T Consensus 106 ikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqe 179 (333)
T KOG1853|consen 106 IKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333333444555555555555455554433 445777788888888874
No 118
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.89 E-value=11 Score=40.41 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE-AESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~-~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+..++++...|+-+.+.|+.++..++.+..++..........+.. ..-+..-|++.+..|.+.++..+.++...
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554444444444333333222211 12233457777777777777777776544
No 119
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.88 E-value=12 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 519 AARETGALQAAKNKLEKQVEEL 540 (1151)
Q Consensus 519 ~a~~~~~L~~~~~~LE~kv~el 540 (1151)
.+.+++.+++....|++++.+.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777766644
No 120
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.84 E-value=13 Score=45.70 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001117 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1151)
Q Consensus 649 l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq~ 688 (1151)
...++.-++.++..|+++++.-...+..|+.+|..|+.+.
T Consensus 585 k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~ 624 (786)
T PF05483_consen 585 KEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKI 624 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344555666777777777777777888888888887754
No 121
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=93.79 E-value=0.45 Score=54.46 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=73.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhcc-cCccCCcchhHHHhchHHHHHHHhhcc
Q 001117 940 SASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLR-RECCTFSNGEYVKAGLAELELWCCQAK 1018 (1151)
Q Consensus 940 ~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~~~ 1018 (1151)
.++..+.+++.+|..++... ...+|+.+..-++...|.+|+..+.+-|+.. -+..|-.--.++...|..+|.++.+-.
T Consensus 176 ~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~ 254 (311)
T PF04091_consen 176 EPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLP 254 (311)
T ss_dssp S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-S
T ss_pred CCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCc
Confidence 34567899999999988544 5689999999999999999999999998753 344444555788899999999999861
Q ss_pred c--ccccccHHHhHHHHHHHhHHhhcccccCCHHHHHhccCcCCCHHHHHHHHhcCc
Q 001117 1019 E--EYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYW 1073 (1151)
Q Consensus 1019 ~--~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~c~~L~~~Qi~kil~~Y~ 1073 (1151)
. .-.+.....|..++|.++||....-..--...+...-.+.++|..+..||..|+
T Consensus 255 ~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 255 VPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SSS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 0 124566789999999999999863222211146556688999999999988774
No 122
>PTZ00014 myosin-A; Provisional
Probab=93.76 E-value=0.076 Score=68.00 Aligned_cols=38 Identities=16% Similarity=0.007 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001117 425 SCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAAR 462 (1151)
Q Consensus 425 AAi~IQ~~~R~~~~rk~y~~~r~a~i~iQs~~Rg~~aR 462 (1151)
+++.||++||+|.+|+.|.+.+.+++.||+.+||++++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~ 816 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVI 816 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555444
No 123
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=12 Score=44.44 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 001117 672 EKVSDMETENQILRQQ 687 (1151)
Q Consensus 672 ~~l~~Le~E~~~lrqq 687 (1151)
-++.+|+++.+-+.++
T Consensus 201 heikRleEe~elln~q 216 (772)
T KOG0999|consen 201 HEIKRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555566666655554
No 124
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.64 E-value=12 Score=47.71 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
++.+..+.-+++.++...+.+.+.+..+......++..+++++..+-..+-++-+.|+..+..++++++..++.
T Consensus 423 ~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~ 496 (1200)
T KOG0964|consen 423 LESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKN 496 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444445555555666666666777777788888888888888776653
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.57 E-value=17 Score=41.65 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 638 ~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++.+...+......++.+.+.++..+...+++..++..++++++..++.
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444445555555555555555555544443
No 126
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.51 E-value=7.7 Score=38.52 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 649 RLKQALEAESKIVQLKTAMHRLEEKVS 675 (1151)
Q Consensus 649 l~~~l~~~~~~~~~l~~~~~~Le~~l~ 675 (1151)
+...+.+++..+..|..+..-|-.+|+
T Consensus 103 le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 103 LEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444443
No 127
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.41 E-value=12 Score=39.27 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 559 TQENAKLQSALQEMQLQFKESKEK 582 (1151)
Q Consensus 559 ~~e~~~L~~~l~~le~~l~~~~~~ 582 (1151)
.-++..+.+.+++-..++.++...
T Consensus 48 kien~~l~~kIeERn~eL~~Lk~~ 71 (177)
T PF13870_consen 48 KIENQQLNEKIEERNKELLKLKKK 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554443
No 128
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.32 E-value=6.4 Score=48.92 Aligned_cols=16 Identities=56% Similarity=0.931 Sum_probs=10.2
Q ss_pred eeCcceEEeccchhhhhc
Q 001117 188 HYAGDVTYQTELFLDKNK 205 (1151)
Q Consensus 188 H~ag~V~Y~~~~fl~kN~ 205 (1151)
+|.|++-|+. ||=-|-
T Consensus 79 Gy~~digyq~--fLYp~e 94 (594)
T PF05667_consen 79 GYRGDIGYQT--FLYPNE 94 (594)
T ss_pred CCCCCCcchh--hccCCh
Confidence 4788888863 654343
No 129
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.30 E-value=11 Score=46.92 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~L 677 (1151)
..+.|..+++-++++....+..++-+++..+++..-+.-.+..-.+++..|++-...|+..+.++
T Consensus 491 ~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 491 QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666555555444444444444444444444444443333
No 130
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.28 E-value=28 Score=43.32 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1151)
++..+.|..+.++++++++.++..+-.++.
T Consensus 378 e~elqsL~~l~aerqeQidelKn~if~~e~ 407 (1265)
T KOG0976|consen 378 EEELQSLLELQAERQEQIDELKNHIFRLEQ 407 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344455555555666666666555554443
No 131
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.27 E-value=12 Score=45.58 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 660 IVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 660 ~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
+.-.-.+++.-+.++..++.|.+.++++
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555543
No 132
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.24 E-value=12 Score=48.94 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=21.2
Q ss_pred CceEEEeeCcceEEeccchhhhh-----chhhhHHHHHHHhh
Q 001117 182 SDFTICHYAGDVTYQTELFLDKN-----KDYVVAEHQALLSA 218 (1151)
Q Consensus 182 ~~F~i~H~ag~V~Y~~~~fl~kN-----~d~~~~~~~~ll~~ 218 (1151)
.+..+.-|+..+.-+.+|-+.-+ .|+++++++..+..
T Consensus 212 GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~ 253 (1317)
T KOG0612|consen 212 GHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGD 253 (1317)
T ss_pred CcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcC
Confidence 34445555544555555555443 47888887765554
No 133
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.15 E-value=16 Score=40.28 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 522 ETGALQAAKNKLEKQVEELTWRL 544 (1151)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~rl 544 (1151)
+...+...+..+++++..|...+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi 61 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQI 61 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 134
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=93.13 E-value=7.3 Score=47.72 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=14.3
Q ss_pred cCccCCcchhHHHhchHHHHHHHhhccc
Q 001117 992 RECCTFSNGEYVKAGLAELELWCCQAKE 1019 (1151)
Q Consensus 992 ~~~cs~s~G~qIr~nls~Le~W~~~~~~ 1019 (1151)
++..-|+| .++-.|+.+-|+
T Consensus 756 ~DvlVWsN--------~RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSN--------DRVIRWVQSIGL 775 (916)
T ss_pred ccceEeec--------HHHHHHHHhcCH
Confidence 45667888 456679988775
No 135
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.09 E-value=12 Score=44.60 Aligned_cols=23 Identities=4% Similarity=0.190 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 664 KTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 664 ~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..++.+++.++..++.++...+.
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555544443
No 136
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=93.06 E-value=15 Score=39.57 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 640 EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 640 ~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+++.+-..++-..++-.+..+--|+.++++-+.+|+.|+..++.+.+
T Consensus 260 ~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 260 EELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444555555666666666666666666655544
No 137
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.01 E-value=13 Score=45.81 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLV 625 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l 625 (1151)
+..|+.+..+++.++
T Consensus 339 v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 339 VSSLEAELNKTRSEL 353 (522)
T ss_pred HhhHHHHHHHHHHHH
Confidence 334444444444433
No 138
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.99 E-value=40 Score=44.33 Aligned_cols=72 Identities=19% Similarity=0.330 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES--KIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~--~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+...+...++..+..|+..+.+....+.+++....+......+.++ .-..++.+++.++.+++.+..|.+.+
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555544444333333322222222222222 33456666666777776666666666
No 139
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.89 E-value=22 Score=44.03 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++.+-.+|.+.+..|+++-..+..
T Consensus 240 we~Er~~L~~tVq~L~edR~~L~~ 263 (739)
T PF07111_consen 240 WEPEREELLETVQHLQEDRDALQA 263 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666665554
No 140
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.77 E-value=6.4 Score=49.20 Aligned_cols=66 Identities=26% Similarity=0.316 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1151)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~ 672 (1151)
+...+..+.++...++..+..+...+........++.....++..++.+.++....+.+.+..|+.
T Consensus 346 e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 346 ELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666655443334444444444444444443333333333333333
No 141
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.77 E-value=6 Score=41.89 Aligned_cols=13 Identities=31% Similarity=0.693 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 001117 664 KTAMHRLEEKVSD 676 (1151)
Q Consensus 664 ~~~~~~Le~~l~~ 676 (1151)
+.....+++.+.+
T Consensus 171 ~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 171 QENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 142
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.75 E-value=5.4 Score=43.41 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
..|..|+..|-+.++++++.-..+...+.-.+....-++.++......+..|+.+++.++.++++......
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444444444444444444334444444455555555555555555555555555554443
No 143
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.70 E-value=16 Score=50.37 Aligned_cols=17 Identities=6% Similarity=-0.035 Sum_probs=7.0
Q ss_pred hhHHHhchHHHHHHHhh
Q 001117 1000 GEYVKAGLAELELWCCQ 1016 (1151)
Q Consensus 1000 G~qIr~nls~Le~W~~~ 1016 (1151)
|-.|+-.|..-++|+..
T Consensus 1119 ~~~l~~ri~~A~~~v~~ 1135 (1353)
T TIGR02680 1119 ARHLQSLILAAERQVAA 1135 (1353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 144
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.66 E-value=8.2 Score=44.56 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhc
Q 001117 674 VSDMETENQILRQQS 688 (1151)
Q Consensus 674 l~~Le~E~~~lrqq~ 688 (1151)
..+|+.|.+++||.+
T Consensus 405 e~eleqevkrLrq~n 419 (502)
T KOG0982|consen 405 EIELEQEVKRLRQPN 419 (502)
T ss_pred HHHHHHHHHHhcccc
Confidence 334444444444433
No 145
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.47 E-value=15 Score=38.23 Aligned_cols=105 Identities=15% Similarity=0.237 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001117 571 EMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL 650 (1151)
Q Consensus 571 ~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~ 650 (1151)
-.+.+++..+............+.++...+ ...+..|.....++.+..+..+..+..+..++.+.+..-....
T Consensus 92 iiE~dLE~~eeraE~~Es~~~eLeEe~~~~-------~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aE 164 (205)
T KOG1003|consen 92 IIEGELERAEERAEAAESQSEELEEDLRIL-------DSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAE 164 (205)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-------HhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 344444444444444444445555444322 1234556666666777777777777776666666555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
..+..+++.+..|+..+.....+...+..++.
T Consensus 165 RsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 165 RRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44444445555555555544444444444443
No 146
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.36 E-value=38 Score=42.51 Aligned_cols=10 Identities=50% Similarity=0.823 Sum_probs=5.8
Q ss_pred ccCCCccccc
Q 001117 1108 LDDNSSIPFS 1117 (1151)
Q Consensus 1108 ~D~~~~~Pf~ 1117 (1151)
|-++-++||-
T Consensus 594 L~~~pcipff 603 (617)
T PF15070_consen 594 LGSNPCIPFF 603 (617)
T ss_pred CCCCCcccce
Confidence 4455567764
No 147
>PRK01156 chromosome segregation protein; Provisional
Probab=92.18 E-value=52 Score=43.70 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 654 ~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++...++..+++++.+|+.++..++.++..++.
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666666666666655553
No 148
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.08 E-value=26 Score=39.96 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 660 IVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 660 ~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++.|-.+..=|++++..+++|..-+++
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~ 217 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQ 217 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677777777777776665
No 149
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.86 E-value=28 Score=39.88 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 523 TGALQAAKNKLEKQVEELTWRLQLEKRMRV 552 (1151)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~rl~~e~~~~~ 552 (1151)
...+......+...+.++..+++.+...+.
T Consensus 70 ka~l~~e~~~l~~e~~~~r~k~e~e~~~~~ 99 (312)
T PF00038_consen 70 KARLELEIDNLKEELEDLRRKYEEELAERK 99 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555554443333
No 150
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.79 E-value=14 Score=47.27 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e 641 (1151)
.++.+|...++..+..+...+++++.+.+.
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666666655554443
No 151
>PRK01156 chromosome segregation protein; Provisional
Probab=91.74 E-value=21 Score=47.44 Aligned_cols=21 Identities=10% Similarity=0.377 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
..++.+++.++.++..+++++
T Consensus 698 ~~l~~~i~~l~~~~~~l~eel 718 (895)
T PRK01156 698 ARLESTIEILRTRINELSDRI 718 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 333333333333333333333
No 152
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=91.69 E-value=2.6 Score=51.70 Aligned_cols=124 Identities=18% Similarity=0.208 Sum_probs=85.8
Q ss_pred CcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhcccCccCCcchhHHHhchHHHHHHHhhcccc
Q 001117 941 ASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEE 1020 (1151)
Q Consensus 941 ~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~ 1020 (1151)
.+++....+..|...+..|+.. +++.....+...+..-|+-.+|+.++++. -.|..-|.|+.+=+..|-..+..
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~---- 426 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQ---- 426 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS------
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHh----
Confidence 4567889999999999999999 99999999999999999999999999876 56666677777766544333332
Q ss_pred cccccHHHhHHHHHHHhHHhhcccccCCH--------------HHHHhccC-cCCCHHHHHHHHh
Q 001117 1021 YAGSSWDELKHIRQAVGFLVIHQKYRISY--------------DEITNDLC-PILSVQQLYRICT 1070 (1151)
Q Consensus 1021 ~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~--------------~~i~~~~c-~~L~~~Qi~kil~ 1070 (1151)
+....-.++..|.+++.||-++..+.... .+++.+.. ..||+.++.+||.
T Consensus 427 ~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 34444578999999999999986544322 12222221 4788888887774
No 153
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.63 E-value=29 Score=39.68 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~ 679 (1151)
.++..++|...++........++......+.........-...+.+-+.++..++.....|+.++.+||.
T Consensus 211 a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 211 AAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554444444333333333333333344444455555555554444443
No 154
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.56 E-value=31 Score=39.80 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001117 613 ELTSENEKLKTLVSSLEKKIDETEKK 638 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~ 638 (1151)
.+..-+.+|+.++..++..+...++.
T Consensus 250 ~~~~hi~~l~~EveRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 250 AEKLHIDKLQAEVERLRTYLSRAQKS 275 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555544443
No 155
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.46 E-value=76 Score=44.11 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 526 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAE 595 (1151)
Q Consensus 526 L~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~e 595 (1151)
|......|..+...++..+..-+-....++.........+..++.+|+..+.++...++.+.+.++.+..
T Consensus 764 L~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~ 833 (1822)
T KOG4674|consen 764 LSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTN 833 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555444433333344444444445555666666666666666666555555554443
No 156
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.43 E-value=13 Score=43.95 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.++.+.+++....+++..|...+.+++++...+.-+++++..-+......-++++.+.++++++-.+.....++-+.
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777776666666666555555555666777777777777666666655443
No 157
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.38 E-value=39 Score=42.88 Aligned_cols=47 Identities=26% Similarity=0.196 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKI---DETEKKFEETSKISEERLKQALEAE 657 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l---~ele~~~~e~~~~~~~l~~~l~~~~ 657 (1151)
+.+|+.|+-.|+.++..|+..- +.++.++..++.+..-+..+++++.
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777776666542 2344444455555555555555543
No 158
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.35 E-value=31 Score=39.47 Aligned_cols=79 Identities=13% Similarity=0.251 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
-.++.+++.....+-.+.+..++.+++.+.+....++++...+..+-+.....+..+-++...+..++..++..++.|+
T Consensus 221 Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 221 YSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555655555656666666666666666666666666666666555555555555555555555555555544443
No 159
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.32 E-value=2.5 Score=45.22 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.+.+..++++.++++.+++++..+..+.. .++..........+.+++++..+|++++..++.++..++.+++.++.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~---~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRT---AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666555554433222 22222222333334445555555666666666666666666655554
No 160
>PF13514 AAA_27: AAA domain
Probab=91.30 E-value=72 Score=43.51 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 560 QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEA 594 (1151)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ 594 (1151)
.+...+..+++.++.+++.+...+.........+.
T Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ 835 (1111)
T PF13514_consen 801 EERERLQEQLEELEEELEQAEEELEELEAELAELL 835 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666655555444333443333
No 161
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.11 E-value=2.7 Score=44.76 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=30.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 627 ~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.++..+..++.++..++....+..+.++.+.+++..++-+...+++++.+|+.||..|-+
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344455555556666666666666677777666543
No 162
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.08 E-value=50 Score=41.29 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc----------------chhHHHHHHHHHHHHHHHHH
Q 001117 561 ENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVP----------------VIDHAVVEELTSENEKLKTL 624 (1151)
Q Consensus 561 e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~----------------~~e~~~~~~L~~e~~kLe~~ 624 (1151)
+......++..+..++..+..++....+.++++..++..+.... .+..+.+.....+...|+.+
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQke 520 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKE 520 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666555555555555543332111 12445555555566666666
Q ss_pred HHHHHHhHH
Q 001117 625 VSSLEKKID 633 (1151)
Q Consensus 625 l~~l~~~l~ 633 (1151)
+..+..++.
T Consensus 521 iN~l~gkL~ 529 (594)
T PF05667_consen 521 INSLTGKLD 529 (594)
T ss_pred HHHHHHHHH
Confidence 666666655
No 163
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.99 E-value=1.8 Score=46.11 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1151)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l 674 (1151)
....+..|..++..|+..+.++...+.+..+.++.+..+...+.-.+..+++++..++.+..+|=++.
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667777777776666666666666666666665555555555666666666666554443
No 164
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.96 E-value=37 Score=39.93 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=5.0
Q ss_pred HHHHHHHhhh
Q 001117 313 DEFVDRFGIL 322 (1151)
Q Consensus 313 ~~F~~ry~~l 322 (1151)
.+|..-|+.|
T Consensus 137 k~F~~IFK~L 146 (622)
T COG5185 137 KGFIIIFKWL 146 (622)
T ss_pred ccHHHHHHHH
Confidence 4555555544
No 165
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.75 E-value=52 Score=40.89 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=14.7
Q ss_pred hccCcCCCHHHHH-------HHHhcCccCCC
Q 001117 1054 NDLCPILSVQQLY-------RICTLYWDDNY 1077 (1151)
Q Consensus 1054 ~~~c~~L~~~Qi~-------kil~~Y~~d~~ 1077 (1151)
++.|+.|---+|. +|-+.|.+.++
T Consensus 631 r~ac~sL~Gykid~~~~s~~ritS~ya~~~~ 661 (716)
T KOG4593|consen 631 RDACYSLLGYKIDFTLESRYRLTSGYAEEPD 661 (716)
T ss_pred HHHHHhhhhhhhhcccccceeeeeeccCCCc
Confidence 4677777777764 45556665444
No 166
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.70 E-value=4.7 Score=46.27 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+....+++++...++.++......++.|++
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455666666666777777777777765
No 167
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.32 E-value=94 Score=43.21 Aligned_cols=21 Identities=5% Similarity=-0.107 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhH
Q 001117 428 RIQRDLRMYLAKKAYKDMCFS 448 (1151)
Q Consensus 428 ~IQ~~~R~~~~rk~y~~~r~a 448 (1151)
+-.+.|=|..+|..|+..+-+
T Consensus 725 k~~a~~IG~~aR~~~R~~ri~ 745 (1353)
T TIGR02680 725 KPAAEYIGAAARERARLRRIA 745 (1353)
T ss_pred CcchhHhhHHHHHHHHHHHHH
Confidence 444557777777777765543
No 168
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.22 E-value=32 Score=41.01 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK-QALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~-~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
...+...++..+..++..+.+++..+.+++........ ...+....+..++.++..++.++..++..++.
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444433333322221 22344455667777777777777777766654
No 169
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.21 E-value=59 Score=40.72 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 001117 611 VEELTSENEKLKTLVSSLEKK 631 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~ 631 (1151)
+.++...+..|..+++.+..+
T Consensus 319 l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 319 LEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444444444
No 170
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.16 E-value=29 Score=37.14 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 649 l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
....+..++..++..+-.+..|+..+.....||+.|
T Consensus 159 ~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 159 HQAELLALQASLKKEEMKVQSLEESLEQKTKENEEL 194 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455556666666666666666666666655
No 171
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.02 E-value=36 Score=37.98 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 654 ~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
...+.++...-.+-..+++++..+++||--|+||
T Consensus 203 qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQ 236 (305)
T PF14915_consen 203 QNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQ 236 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777777788899999999999999885
No 172
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.02 E-value=64 Score=41.77 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHHHH-HHHhCCCCHHHHHH
Q 001117 944 HWQSIIDSLNTLLS-TLKQNFVPPVLVQK 971 (1151)
Q Consensus 944 ~~~~il~~L~~~~~-~l~~~~v~~~l~~Q 971 (1151)
+++.+-+-+..=.+ .++..+|++.+++|
T Consensus 836 t~~eld~~I~~e~t~~~~~~n~ne~~vq~ 864 (1072)
T KOG0979|consen 836 TMDELDQAITDELTRALKFENVNEDAVQQ 864 (1072)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 44444444444444 56667777775554
No 173
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.80 E-value=1e+02 Score=42.90 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 643 SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 643 ~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
.....++...+..+...+..+++.+..|+.++.+|+.++.....+
T Consensus 843 ~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~ 887 (1822)
T KOG4674|consen 843 QNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQ 887 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333344444444445555556666666666666666666655543
No 174
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.74 E-value=27 Score=45.47 Aligned_cols=21 Identities=14% Similarity=0.450 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEK 630 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~ 630 (1151)
.++.|..+...++.++.++..
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~ 309 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLST 309 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444444
No 175
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.74 E-value=5.4 Score=37.43 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 621 Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
++..+..|+..++..+....++.++++++...+..++.+.......+.+|+.+|.++...++
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444443333333444444444433333333333344444444444444333333
No 176
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.70 E-value=33 Score=43.97 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 560 QENAKLQSALQEMQLQFKESKE 581 (1151)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~ 581 (1151)
+|.+.+..++..+...+++++.
T Consensus 639 ~EL~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 639 KELERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445444444433
No 177
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.64 E-value=63 Score=40.17 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=15.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHh
Q 001117 469 RQTRASILIQSHCRKYLARLHYMK 492 (1151)
Q Consensus 469 r~~~aa~~IQ~~~R~~~~r~~~~~ 492 (1151)
...++.++.++.+..-..|.+...
T Consensus 84 ~~~k~~~i~~r~~~~~~dr~~~~~ 107 (716)
T KOG4593|consen 84 ELTKAQSILARNYEAEVDRKHKLL 107 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777766666666543
No 178
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.49 E-value=15 Score=38.84 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 001117 566 QSALQEMQLQF 576 (1151)
Q Consensus 566 ~~~l~~le~~l 576 (1151)
++.+.++..++
T Consensus 101 ~~~~~~~~~~l 111 (191)
T PF04156_consen 101 QERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 179
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.42 E-value=30 Score=44.21 Aligned_cols=17 Identities=6% Similarity=-0.125 Sum_probs=10.8
Q ss_pred cCcCCCHHHHHHHHhcC
Q 001117 1056 LCPILSVQQLYRICTLY 1072 (1151)
Q Consensus 1056 ~c~~L~~~Qi~kil~~Y 1072 (1151)
-++..++-||.+-|...
T Consensus 945 ky~~~~~~el~kkL~~~ 961 (1200)
T KOG0964|consen 945 KYQDKKSKELMKKLHRC 961 (1200)
T ss_pred HhccCCHHHHHHHHHHH
Confidence 36677777776665443
No 180
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.30 E-value=3.4 Score=43.38 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK 651 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~ 651 (1151)
+.+++.+++..|-.++.+++.+.++...+++.++.++..+..
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE 184 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE 184 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444444444444444444443333
No 181
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.23 E-value=4 Score=35.57 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEK 673 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~ 673 (1151)
.|+.++..|+..++.+..+++-.+..+..+..+.+....++..+-..+.+|..++..|+.+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777766666666666666666655555555555554555444444444
No 182
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.18 E-value=10 Score=45.71 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=15.3
Q ss_pred cchhHHHhchHHHHHHHhhccc
Q 001117 998 SNGEYVKAGLAELELWCCQAKE 1019 (1151)
Q Consensus 998 s~G~qIr~nls~Le~W~~~~~~ 1019 (1151)
+..+-++.-=+++-+|+++-++
T Consensus 707 sed~Vv~WTnhrvmeWLrsiDL 728 (861)
T KOG1899|consen 707 SEDVVVRWTNHRVMEWLRSIDL 728 (861)
T ss_pred ChhHHHHhhhHHHHHHHHhccH
Confidence 3444566666889999998653
No 183
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.07 E-value=4.9 Score=46.12 Aligned_cols=74 Identities=26% Similarity=0.278 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
..+.++..+++.+-.++.+++.+++.+.+++.++..++..+..+.+..-.+.-.....++-++..++++.+.+.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK 119 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555444444444433333444444444444444444444443
No 184
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.93 E-value=4 Score=43.74 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
.+.....++++++++++.++.++.... .....++..++.+....+.+|+++.++|++++..++.+++.++.+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~---~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTW---NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777777776666655443 344555666666667777778888888888888888777776654
No 185
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.86 E-value=26 Score=41.05 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSD 676 (1151)
Q Consensus 663 l~~~~~~Le~~l~~ 676 (1151)
+++++.+|++++.+
T Consensus 433 ~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 433 KDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444444
No 186
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.84 E-value=3.2 Score=43.51 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAM 667 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~ 667 (1151)
+|.+++..++.++++.++++..++.+...++.....+...+.++.+....|...+
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 3445555556666666666666666555555555544444444444444444333
No 187
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.72 E-value=45 Score=41.93 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKI 632 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l 632 (1151)
.+.++.+..|..+++.....+.+++
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665555555554
No 188
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.69 E-value=47 Score=42.85 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=2.5
Q ss_pred ccccCC
Q 001117 1106 FLLDDN 1111 (1151)
Q Consensus 1106 ll~D~~ 1111 (1151)
||+-++
T Consensus 1021 FliTPK 1026 (1072)
T KOG0979|consen 1021 FLITPK 1026 (1072)
T ss_pred EEecch
Confidence 444433
No 189
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.53 E-value=77 Score=40.02 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+.++..++++++.....+.++-+++..++.
T Consensus 852 ~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~ 883 (970)
T KOG0946|consen 852 LIEQKLSNLQEKIKFGNNLIKELTEKISSLEA 883 (970)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHH
Confidence 33444455555555555555555555555443
No 190
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.29 E-value=49 Score=37.17 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ 633 (1151)
+.+|-++...++....++...+.
T Consensus 160 ~~el~aei~~lk~~~~e~~eki~ 182 (294)
T COG1340 160 LKELKAEIDELKKKAREIHEKIQ 182 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 191
>PLN02939 transferase, transferring glycosyl groups
Probab=88.25 E-value=50 Score=43.28 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
+....+.-.+..++++++.+..|.+|.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 373 EIHSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34445555666777777777766666543
No 192
>PLN03188 kinesin-12 family protein; Provisional
Probab=88.21 E-value=1.1e+02 Score=41.03 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 646 ~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
-.++..++.++++...-.++.-...+.+..++..++++|+.
T Consensus 1199 agellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkr 1239 (1320)
T PLN03188 1199 AGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKR 1239 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666555555555555555555555555555544
No 193
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.07 E-value=76 Score=39.14 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
++.++.+|+.+++.-+..++.+
T Consensus 610 ~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 610 FRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 194
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.76 E-value=65 Score=41.12 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 646 ~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..++..++...++++..++.++..++.++..++++++.++.
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666666666666666666555
No 195
>PRK11281 hypothetical protein; Provisional
Probab=87.70 E-value=16 Score=48.78 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1151)
.+....|..|...++.+++-.+.++.
T Consensus 191 ~~~~~~l~ae~~~l~~~~~~~~~~l~ 216 (1113)
T PRK11281 191 PSQRVLLQAEQALLNAQNDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666655555555554444
No 196
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.58 E-value=8.4 Score=32.69 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1151)
Q Consensus 642 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le 678 (1151)
+.........++.+.+.....|..++..|+.++++++
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444555555555555555555555554443
No 197
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.54 E-value=48 Score=40.70 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001117 567 SALQEMQLQFKESKEKL 583 (1151)
Q Consensus 567 ~~l~~le~~l~~~~~~l 583 (1151)
.++.+++.++..++.++
T Consensus 204 ~~l~~l~~~l~~~~~~l 220 (498)
T TIGR03007 204 SEISEAQEELEAARLEL 220 (498)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 198
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.49 E-value=6.1 Score=47.80 Aligned_cols=77 Identities=22% Similarity=0.396 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE---RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~---l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+++.|+.+++.|+..+.+++..++.++.++++...+... ...++...+..+..|+.++.+-...++.|+.++..+++
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555444333221 11234455666777777777777777778887777765
No 199
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.33 E-value=8.7 Score=33.53 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 620 KLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 620 kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+|+..+..|+..++.+..++...+..+..+...-......+...-.++.+|+++++.|+.|++..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578888999999988888887777666666666566666777777777888888888887776654
No 200
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.28 E-value=60 Score=37.12 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ----ALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~----l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
..+..++..++..+..+..++..++.....++....++... ....+..+..++.++..++.++.....+.+.
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333333333222 2223333444444444444444444433333
No 201
>PRK10698 phage shock protein PspA; Provisional
Probab=87.02 E-value=50 Score=35.93 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------HHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES--KI---------VQLKTAMHRLEEKVSDM 677 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~--~~---------~~l~~~~~~Le~~l~~L 677 (1151)
..+..|..+....+..++.|+..+..++.++.+.+.....+..+...++. ++ ...-....+++++|.++
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~ 178 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQM 178 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777777777666666666555433322 22 12233455566666666
Q ss_pred HHHHHH
Q 001117 678 ETENQI 683 (1151)
Q Consensus 678 e~E~~~ 683 (1151)
+.+.+.
T Consensus 179 Ea~aea 184 (222)
T PRK10698 179 EAEAES 184 (222)
T ss_pred HHHHhH
Confidence 666554
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.99 E-value=21 Score=41.73 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
.+.+.+...++++.+|++.+..+
T Consensus 425 ~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 425 REKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445555555666666555443
No 203
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.93 E-value=33 Score=37.46 Aligned_cols=46 Identities=22% Similarity=0.146 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 001117 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLS 691 (1151)
Q Consensus 646 ~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq~l~~ 691 (1151)
+..++.-+.+++......++.+..+.+++..|+++.+.++.+-+.+
T Consensus 62 In~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl 107 (230)
T PF10146_consen 62 INTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3334444444555555566666666666667777777666653333
No 204
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=86.82 E-value=0.2 Score=65.23 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
..+++++..++.+++++...++.+.+.....++....+...+.++..++...+..+.+|.....+|+.|+..+.
T Consensus 148 ~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~ 221 (859)
T PF01576_consen 148 AKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELT 221 (859)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777777666655555555555555555555555555555555555554445555544443
No 205
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.66 E-value=41 Score=38.43 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001117 645 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1151)
Q Consensus 645 ~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq~ 688 (1151)
+.+.+..+++.+..++.+|+..+..+-++.+++..|-+..+.++
T Consensus 127 ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~ 170 (319)
T PF09789_consen 127 EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKA 170 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888888888888888888888888777654
No 206
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.20 E-value=69 Score=40.71 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1151)
+.++.....+...|+.++..|+.++...+.
T Consensus 358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~ 387 (717)
T PF09730_consen 358 ECKYKVAVSEVIQLKAELKALKSKYNELEE 387 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666665555444
No 207
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=86.18 E-value=0.22 Score=64.75 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
.+..+..++..|..++.++...+.+....+.++++.+..+...+.+.+..+..++..+...+....+++.++..+
T Consensus 427 ~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~ 501 (859)
T PF01576_consen 427 QLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQL 501 (859)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444444444444444444444433333334433433333333444443333
No 208
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=85.78 E-value=79 Score=42.46 Aligned_cols=22 Identities=5% Similarity=0.161 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 665 TAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 665 ~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+.+.+|-+++...-++++.+.+
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l~~ 286 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLIAS 286 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544433
No 209
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=85.50 E-value=14 Score=34.61 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
.|-.|..+|+....-|++.+-+.+.+..++...+..-...+..++.+++.|.=....|..++..|..|++...
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556677777777777777776666666666555555555666666666666677777777777777776443
No 210
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.37 E-value=54 Score=37.10 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
.++...+...+..+..++..+..-|
T Consensus 122 ~~~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 122 EELQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 211
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.35 E-value=72 Score=36.13 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 637 KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 637 ~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..++.+..++-++...++..++-+ +..|..++..|+.+...|+.
T Consensus 156 ~~le~Lr~EKVdlEn~LE~EQE~l------vN~L~Kqm~~l~~eKr~Lq~ 199 (310)
T PF09755_consen 156 EELERLRREKVDLENTLEQEQEAL------VNRLWKQMDKLEAEKRRLQE 199 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555554443322 33344444455555555544
No 212
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.14 E-value=13 Score=41.15 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
...|+....+++.....++............+..++.+.+..+..+......-+.+...++.++...
T Consensus 49 a~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 49 AEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444555555555555555555555555555555555443
No 213
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.06 E-value=45 Score=37.73 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 001117 946 QSIIDSLNTLL 956 (1151)
Q Consensus 946 ~~il~~L~~~~ 956 (1151)
+.+-.++..++
T Consensus 286 ~~l~nl~~~l~ 296 (302)
T PF10186_consen 286 DTLGNLLNLLW 296 (302)
T ss_pred hhHHHHHHHHh
Confidence 33333333333
No 214
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=85.04 E-value=98 Score=37.44 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHhhc
Q 001117 789 TSVFDRLIQMIGSAIE 804 (1151)
Q Consensus 789 ~~ll~~ii~~i~~~i~ 804 (1151)
...+..-+..|+..|+
T Consensus 277 ~~~Lk~H~~svr~HI~ 292 (475)
T PRK10361 277 ESALQEHIASVRNHIR 292 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555444
No 215
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.88 E-value=89 Score=36.81 Aligned_cols=25 Identities=12% Similarity=0.344 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+.-..+...++.|.+.-+|-..|+.
T Consensus 393 Ei~gniRKq~~DI~Kil~etreLqk 417 (521)
T KOG1937|consen 393 EIDGNIRKQEQDIVKILEETRELQK 417 (521)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 216
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.69 E-value=52 Score=40.78 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 001117 531 NKLEKQVEEL 540 (1151)
Q Consensus 531 ~~LE~kv~el 540 (1151)
.+|.+++.++
T Consensus 142 ael~qr~~al 151 (916)
T KOG0249|consen 142 AELAQRNAAL 151 (916)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 217
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.68 E-value=6.7 Score=41.87 Aligned_cols=60 Identities=32% Similarity=0.473 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
++.++++++++...+++++++...+++.+++ +...++++.+++..+..+|-+|.+.++.+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~--------------~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQK--------------KVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 5555666666655555555554444444433 34444444444445555555555555443
No 218
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.28 E-value=9.7 Score=32.53 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.++++.++...|..+..+++...+.|+.|++.+++
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666666666666655
No 219
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.04 E-value=17 Score=44.17 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=8.8
Q ss_pred HHHHhhcCCcchhHhhH
Q 001117 131 ILDLIEKKPGGIIALLD 147 (1151)
Q Consensus 131 ~ldlie~~~~Gil~lLd 147 (1151)
+.+|..++. +|+.+|-
T Consensus 59 vyEL~~~~~-~li~il~ 74 (652)
T COG2433 59 VYELGADKR-DLIRILK 74 (652)
T ss_pred HHHHhcChh-HHHHHHH
Confidence 556665543 5555554
No 220
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=83.74 E-value=45 Score=43.54 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhccCC-CeeeEe-------------cCCCCC--CCCCcccccch
Q 001117 248 FKQQLQQLLETLSSSE-PHYIRC-------------VKPNNL--LKPAIFENKNV 286 (1151)
Q Consensus 248 f~~sl~~L~~~l~~t~-~hfirC-------------IkPN~~--~~~~~fd~~~v 286 (1151)
+-..|..|+++|...+ -++|+| +-|++. +..+.||...+
T Consensus 164 IPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~ 218 (1041)
T KOG0243|consen 164 IPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTI 218 (1041)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcc
Confidence 4456777777777776 445666 456665 55566666533
No 221
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.49 E-value=1e+02 Score=36.47 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 619 EKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 619 ~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
.+++..+.+..++...+...+.|.++...++...+...+++...|..+-.+|+..|..++.++
T Consensus 185 ~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~a 247 (420)
T COG4942 185 AELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAA 247 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444445555555555555556555566666666655444
No 222
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.28 E-value=1.1e+02 Score=36.77 Aligned_cols=15 Identities=13% Similarity=-0.068 Sum_probs=6.3
Q ss_pred HHHHHHHhcCccCCC
Q 001117 1063 QQLYRICTLYWDDNY 1077 (1151)
Q Consensus 1063 ~Qi~kil~~Y~~d~~ 1077 (1151)
.|+--+-.....++.
T Consensus 690 tq~de~~~ql~aaed 704 (772)
T KOG0999|consen 690 TQLDELQRQLAAAED 704 (772)
T ss_pred HHHHHHHHHHHhhhh
Confidence 444444444443333
No 223
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=83.27 E-value=97 Score=35.98 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001117 607 DHAVVEELTSENEKLKTLVSSLEKKIDET 635 (1151)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~el 635 (1151)
+...++.|..|..+|+..+...+++-.+.
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aqk~~~ek 279 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQKSYQEK 279 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777665543
No 224
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.25 E-value=1e+02 Score=36.29 Aligned_cols=82 Identities=23% Similarity=0.238 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 516 LKMAARETGALQAAKNKLEKQVEELTWRLQLEK-----RMRVDMEEAKTQENAKLQ-SALQEMQLQFKESKEKLMKEIEV 589 (1151)
Q Consensus 516 lk~~a~~~~~L~~~~~~LE~kv~el~~rl~~e~-----~~~~~le~~~~~e~~~L~-~~l~~le~~l~~~~~~l~~e~~~ 589 (1151)
+.+-..-+.+|......+..++.+++..-+.-+ +...-.++.+..|.+.-+ ..+++++..+....++.....+.
T Consensus 288 l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel 367 (521)
T KOG1937|consen 288 LDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEEL 367 (521)
T ss_pred cCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 333344455566666666666666665444221 111111111112222222 45666666666655555433333
Q ss_pred HHHHHhhc
Q 001117 590 AKKEAEKV 597 (1151)
Q Consensus 590 ~~~l~ee~ 597 (1151)
+.++..++
T Consensus 368 ~~~Lrsel 375 (521)
T KOG1937|consen 368 AEKLRSEL 375 (521)
T ss_pred HHHHHHHH
Confidence 44444333
No 225
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.18 E-value=24 Score=34.59 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le 678 (1151)
+.|...+.+|.++++.+-.++++..+-.+..+.+..++...+......+...+..+..|+.++.+++
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666666666655555555544444444454445555555555555555554443
No 226
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=83.14 E-value=1e+02 Score=36.05 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 561 ENAKLQSALQEMQLQFKESKEKL 583 (1151)
Q Consensus 561 e~~~L~~~l~~le~~l~~~~~~l 583 (1151)
|+...+++++.+..++++++.++
T Consensus 303 e~e~~rkelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 303 ENETSRKELEQLRVALEKAEKEL 325 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456666666666665554
No 227
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=83.02 E-value=1.6e+02 Score=38.17 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhc
Q 001117 246 SRFKQQLQQLLETLS 260 (1151)
Q Consensus 246 ~~f~~sl~~L~~~l~ 260 (1151)
..+..++..|.+.|.
T Consensus 152 ~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 152 DKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345677777888774
No 228
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=83.00 E-value=1.2e+02 Score=36.82 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=9.9
Q ss_pred CcchHHHHHHHHHHHHHHhc
Q 001117 241 FSSIGSRFKQQLQQLLETLS 260 (1151)
Q Consensus 241 ~~tv~~~f~~sl~~L~~~l~ 260 (1151)
+++|..+...+|+.|-+.+.
T Consensus 166 ~s~v~~~l~~~l~~l~d~~k 185 (518)
T PF10212_consen 166 YSAVFTQLAASLHKLHDVLK 185 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544443
No 229
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=82.98 E-value=33 Score=33.27 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFE---------------ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~---------------e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~ 675 (1151)
.+.+...+..++..+.+.++.++++++--+ +..+...++..+++.++..+..++++.+.++++++
T Consensus 22 l~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~ 101 (119)
T COG1382 22 LQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLE 101 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665553111 12233344555555566666666666666666666
Q ss_pred HHHHHHHHH
Q 001117 676 DMETENQIL 684 (1151)
Q Consensus 676 ~Le~E~~~l 684 (1151)
+|++++...
T Consensus 102 eLq~~i~~~ 110 (119)
T COG1382 102 ELQSEIQKA 110 (119)
T ss_pred HHHHHHHHH
Confidence 666666544
No 230
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.93 E-value=1e+02 Score=38.68 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 658 SKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 658 ~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+..+++++..+++++.++-.++...|+
T Consensus 346 ~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 346 ESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544
No 231
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.84 E-value=22 Score=36.17 Aligned_cols=8 Identities=38% Similarity=0.268 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001117 677 METENQIL 684 (1151)
Q Consensus 677 Le~E~~~l 684 (1151)
.+-|++.|
T Consensus 138 ke~E~~kL 145 (151)
T PF11559_consen 138 KEREIEKL 145 (151)
T ss_pred HHHHHHHH
Confidence 33333333
No 232
>PRK11281 hypothetical protein; Provisional
Probab=82.70 E-value=44 Score=44.87 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 001117 614 LTSENEKLKTLVSSLEKKIDETE 636 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele 636 (1151)
|+.....+++.+++.++.+.+..
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~N 148 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYN 148 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 233
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.67 E-value=73 Score=34.11 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI-VQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~-~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
...+......++.++.+++...+.++.++..++.+..++..+....-..+ ....-..--|+.++..|.+.++.-.
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ke 163 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKE 163 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666666666665554433322 2233344445666666666665443
No 234
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.56 E-value=87 Score=37.76 Aligned_cols=21 Identities=5% Similarity=0.145 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001117 561 ENAKLQSALQEMQLQFKESKE 581 (1151)
Q Consensus 561 e~~~L~~~l~~le~~l~~~~~ 581 (1151)
+++..+++..+|...+..++.
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~ 352 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQA 352 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444333333
No 235
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=82.50 E-value=1.6e+02 Score=39.81 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001117 607 DHAVVEELTSENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1151)
.......|..|...++.+++.++.++.
T Consensus 171 ~~a~~~~lqae~~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 171 AQAQLTALQAESAALKALVDELELAQL 197 (1109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666666666666655544
No 236
>PRK00106 hypothetical protein; Provisional
Probab=82.39 E-value=1.1e+02 Score=37.91 Aligned_cols=6 Identities=17% Similarity=0.108 Sum_probs=2.8
Q ss_pred HHHHHH
Q 001117 820 STLLFL 825 (1151)
Q Consensus 820 ~~Ll~~ 825 (1151)
..|||-
T Consensus 379 AGLLHD 384 (535)
T PRK00106 379 AGFLHD 384 (535)
T ss_pred HHHHHh
Confidence 445553
No 237
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=82.18 E-value=1.2e+02 Score=36.08 Aligned_cols=6 Identities=0% Similarity=0.174 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001117 655 EAESKI 660 (1151)
Q Consensus 655 ~~~~~~ 660 (1151)
.++...
T Consensus 496 slqeEf 501 (527)
T PF15066_consen 496 SLQEEF 501 (527)
T ss_pred HHHHHH
Confidence 333333
No 238
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.05 E-value=30 Score=39.32 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
..|..|+..|.-+++-|+..++++++.+.++.++..+....++-.......++.++..|++++....+-+
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777888888888888777777777665555555555556666666666666665444433
No 239
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=81.98 E-value=1.4e+02 Score=36.86 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 522 ETGALQAAKNKLEKQVEELTWRLQLE 547 (1151)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~rl~~e 547 (1151)
+...+++....+++++..|+..+..-
T Consensus 190 ~~~~~~~q~~~le~ki~~lq~a~~~t 215 (629)
T KOG0963|consen 190 EEQNLQEQLEELEKKISSLQSAIEDT 215 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666777776665555433
No 240
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.73 E-value=74 Score=37.25 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 001117 570 QEMQLQFKESKEKL 583 (1151)
Q Consensus 570 ~~le~~l~~~~~~l 583 (1151)
.+.+..++++..++
T Consensus 237 ~~~~~~L~kl~~~i 250 (359)
T PF10498_consen 237 PETKSQLDKLQQDI 250 (359)
T ss_pred hHHHHHHHHHHHHH
Confidence 33333444433333
No 241
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=81.63 E-value=1.4e+02 Score=36.66 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 656 AESKIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 656 ~~~~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
.+.+...|+++.+..++....+-+..+.
T Consensus 353 ~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 353 VEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444444444433
No 242
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=81.47 E-value=1.1e+02 Score=35.21 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.........+++.+-.++..|+.|+..++.
T Consensus 236 Ne~F~tfk~Emekm~Kk~kklEKE~~~~k~ 265 (309)
T PF09728_consen 236 NEVFETFKKEMEKMSKKIKKLEKENQTWKS 265 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777777777777777665
No 243
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.12 E-value=1.8e+02 Score=37.58 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA--ESKI-----VQLKTAMHRLEEKVSDMETE 680 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~--~~~~-----~~l~~~~~~Le~~l~~Le~E 680 (1151)
...+.+|...+...+.++..|..+++..+++...++.+..-+.+.++-- +..+ .-..++--+--.+|.+||.|
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaE 198 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAE 198 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888999999999999999999998888887777666655321 1111 11111111112488999999
Q ss_pred HHHHHH
Q 001117 681 NQILRQ 686 (1151)
Q Consensus 681 ~~~lrq 686 (1151)
=.+||-
T Consensus 199 C~rLr~ 204 (769)
T PF05911_consen 199 CQRLRA 204 (769)
T ss_pred HHHHHH
Confidence 999886
No 244
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=80.98 E-value=1.2e+02 Score=35.42 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 514 RKLKMAARETGALQAAKNK 532 (1151)
Q Consensus 514 ~~lk~~a~~~~~L~~~~~~ 532 (1151)
.+|..+...+..++.....
T Consensus 8 ~KL~et~~~V~~m~~~L~~ 26 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEE 26 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555444444333
No 245
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.93 E-value=69 Score=35.02 Aligned_cols=61 Identities=16% Similarity=0.289 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E 680 (1151)
.|..|+..+.++|......+..+|..+..++.+.. ..+..+..+.+++..|++++.++..+
T Consensus 43 ~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~-------~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 43 ELLQERMAHVEELRQINQDINTLENIIKQAESERN-------KRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333333333 33344445556666666666666666
No 246
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.89 E-value=28 Score=35.29 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001117 613 ELTSENEKLKTLVSSLEKKIDETEKKF 639 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1151)
.+..++..|+..+..|+.++++++.++
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333333
No 247
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=80.59 E-value=63 Score=38.28 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001117 453 QTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYM 491 (1151)
Q Consensus 453 Qs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~ 491 (1151)
+...--+..-.++.....+.||.++|..|.-|+..+-++
T Consensus 346 EKhVhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~~ 384 (489)
T KOG3684|consen 346 EKHVHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLVS 384 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 334444555555666667778888999998887776653
No 248
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=80.21 E-value=1.5e+02 Score=36.27 Aligned_cols=24 Identities=13% Similarity=0.383 Sum_probs=13.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH
Q 001117 889 KQQLAAYVEKI-YGIIRDNLKKELS 912 (1151)
Q Consensus 889 ~q~L~~~~~~i-y~~l~~~~~~~l~ 912 (1151)
.+|+-.-+..+ |+..+..+.+-+.
T Consensus 552 ~EqvcnWlae~Gl~qY~n~~r~wv~ 576 (861)
T KOG1899|consen 552 SEQVCNWLAEIGLGQYMNEVRRWVR 576 (861)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHh
Confidence 34555555555 6666655555543
No 249
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=80.07 E-value=81 Score=32.93 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 650 ~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
...+.+.+..+..++.++...+.+...++..+..++.
T Consensus 97 ~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 97 KQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444433
No 250
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.54 E-value=1.7e+02 Score=36.24 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
.....+|+.+++.+..++...=.++...|++
T Consensus 341 ~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 341 EESLEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666665555555555553
No 251
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=79.53 E-value=57 Score=30.86 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001117 528 AAKNKLEKQVEELTWRLQ 545 (1151)
Q Consensus 528 ~~~~~LE~kv~el~~rl~ 545 (1151)
..+..+++++.-|+..++
T Consensus 9 as~~el~n~La~Le~slE 26 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLE 26 (107)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 252
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.93 E-value=18 Score=38.33 Aligned_cols=75 Identities=31% Similarity=0.472 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE----KVSDMETENQILRQ 686 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~----~l~~Le~E~~~lrq 686 (1151)
+..|.+++..++..+.+++..++.+.....+. .+...+..++.+++.++..++.+++.+.. .+..+++++...+.
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433222221 22333444455555555555555554432 45555555555544
No 253
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=78.83 E-value=71 Score=35.31 Aligned_cols=26 Identities=19% Similarity=0.449 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETE 636 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1151)
+.+..+|++.|++-++-++..|.+..
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekD 144 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 45566777788887777777766543
No 254
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.43 E-value=1.3e+02 Score=37.82 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRV---DMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAE 595 (1151)
Q Consensus 519 ~a~~~~~L~~~~~~LE~kv~el~~rl~~e~~~~~---~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~e 595 (1151)
+.....+|.......|+++.++...+.+....-. ..+....+....+...+++|..+..+-..+...-..+.+++-+
T Consensus 59 a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 59 ASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCE 138 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666655543221111 1111223444555555555555555544444444444444444
Q ss_pred hc
Q 001117 596 KV 597 (1151)
Q Consensus 596 e~ 597 (1151)
++
T Consensus 139 ~l 140 (660)
T KOG4302|consen 139 EL 140 (660)
T ss_pred Hh
Confidence 43
No 255
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=78.33 E-value=1.1e+02 Score=33.31 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK--I---------VQLKTAMHRLEEKVSD 676 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~--~---------~~l~~~~~~Le~~l~~ 676 (1151)
...+..|..+...++..++.|+..+.+++.++.+.+.....+..+...++.. + ......+.++++++..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~ 177 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDE 177 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 3456677777777777788888888888777777766666555555443332 1 2334455566666666
Q ss_pred HHHHHHH
Q 001117 677 METENQI 683 (1151)
Q Consensus 677 Le~E~~~ 683 (1151)
++.+.+.
T Consensus 178 ~ea~aea 184 (219)
T TIGR02977 178 LEAQAES 184 (219)
T ss_pred HHHHHHH
Confidence 5555443
No 256
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=78.28 E-value=1.8e+02 Score=36.00 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHh
Q 001117 620 KLKTLVSSLEKK 631 (1151)
Q Consensus 620 kLe~~l~~l~~~ 631 (1151)
.|+.++..++.+
T Consensus 341 ~L~~eL~~~r~e 352 (522)
T PF05701_consen 341 SLEAELNKTRSE 352 (522)
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 257
>PLN02939 transferase, transferring glycosyl groups
Probab=78.18 E-value=2.4e+02 Score=37.31 Aligned_cols=27 Identities=11% Similarity=0.332 Sum_probs=17.1
Q ss_pred HHHHHHhcCc-cCCCCCCCCCHHHHHHHHH
Q 001117 1064 QLYRICTLYW-DDNYNTRSVSPNVISSMRI 1092 (1151)
Q Consensus 1064 Qi~kil~~Y~-~d~~e~~~v~~~~i~~v~~ 1092 (1151)
.+++-...|- |.-+| |.+-..+..|..
T Consensus 852 ~IYAaADIFLmPSr~E--PfGLvqLEAMAy 879 (977)
T PLN02939 852 SIYAASDMFIIPSMFE--PCGLTQMIAMRY 879 (977)
T ss_pred HHHHhCCEEEECCCcc--CCcHHHHHHHHC
Confidence 4556566665 56665 577777777755
No 258
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=77.73 E-value=36 Score=28.97 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
...++.++...+....+|..+|..|+.+++.++
T Consensus 27 n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 27 NLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555556666655555544
No 259
>PF15456 Uds1: Up-regulated During Septation
Probab=77.59 E-value=35 Score=33.48 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL-----------KQALEAESKIVQLKTAMHRLEEKVS 675 (1151)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~-----------~~l~~~~~~~~~l~~~~~~Le~~l~ 675 (1151)
..+.++.|.+|...|...++.++.++. ++.++.++......+- ..+.+.+..+....+.++++..++.
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~ 98 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELW 98 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467789999999999999999999888 6666655544443331 1233445555556666666666666
Q ss_pred HHHHHHHHHHHh
Q 001117 676 DMETENQILRQQ 687 (1151)
Q Consensus 676 ~Le~E~~~lrqq 687 (1151)
.++......++.
T Consensus 99 ~le~R~~~~~~r 110 (124)
T PF15456_consen 99 KLENRLAEVRQR 110 (124)
T ss_pred HHHHHHHHHHHH
Confidence 666666655553
No 260
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.53 E-value=1.5e+02 Score=38.93 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=16.9
Q ss_pred hhHHHHhcCCCCccChHHHHH--HHhhhhhc
Q 001117 297 EAIRISCAGYPTRKPFDEFVD--RFGILASK 325 (1151)
Q Consensus 297 e~iri~~~Gyp~r~~~~~F~~--ry~~l~~~ 325 (1151)
++..-..+-|..+.+|-|.+. =|-.|+|+
T Consensus 173 d~Le~~~~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 173 DTLEAQGAEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred HHHHhcCCeEEEEEEehhhhhHHHHHhcCCc
Confidence 333334455777777777663 45566654
No 261
>PF13514 AAA_27: AAA domain
Probab=77.37 E-value=2.9e+02 Score=37.80 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=17.8
Q ss_pred chhhhHHHHhcCCCCccChHHHHH
Q 001117 294 GVMEAIRISCAGYPTRKPFDEFVD 317 (1151)
Q Consensus 294 gvle~iri~~~Gyp~r~~~~~F~~ 317 (1151)
=++..|+-.-.|||.|-+|+ |+.
T Consensus 11 T~l~fI~~lLFGfp~r~~~~-f~~ 33 (1111)
T PF13514_consen 11 TLLAFIRDLLFGFPTRSPYN-FYH 33 (1111)
T ss_pred HHHHHHHHHhcCCCCCCCcc-cCC
Confidence 45677887889999998887 643
No 262
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=77.24 E-value=0.76 Score=59.01 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 001117 563 AKLQSALQEMQ 573 (1151)
Q Consensus 563 ~~L~~~l~~le 573 (1151)
..|+++++.++
T Consensus 294 ~~LrDElD~lR 304 (713)
T PF05622_consen 294 RALRDELDELR 304 (713)
T ss_dssp -----------
T ss_pred HHHhhhHHHHH
Confidence 34444444433
No 263
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.13 E-value=30 Score=38.43 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
+++.+..+...|..++..+..+++.++...+.+++.......++.+++.++...+....++.--+..+-+++
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555554444444444444444444444444444444444443333
No 264
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=77.11 E-value=2.3e+02 Score=36.60 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1151)
.+++..++++..|+-++.-+.++++
T Consensus 141 ~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 141 ARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888777777655
No 265
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=76.69 E-value=94 Score=32.92 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 520 ARETGALQAAKNKLEKQVEELTWRLQL 546 (1151)
Q Consensus 520 a~~~~~L~~~~~~LE~kv~el~~rl~~ 546 (1151)
..++..|...+..|+.++.+++.+.+.
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777666553
No 266
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=76.42 E-value=39 Score=30.06 Aligned_cols=8 Identities=13% Similarity=0.285 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001117 622 KTLVSSLE 629 (1151)
Q Consensus 622 e~~l~~l~ 629 (1151)
+.++++|+
T Consensus 24 qmEieELK 31 (79)
T PRK15422 24 QMEIEELK 31 (79)
T ss_pred HHHHHHHH
Confidence 33333333
No 267
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.03 E-value=2.8e+02 Score=36.99 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHH
Q 001117 947 SIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQL 984 (1151)
Q Consensus 947 ~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~l 984 (1151)
..+..+..+-..+...++...+...+..++....|..+
T Consensus 740 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 777 (908)
T COG0419 740 KALELLEELREKLGKAGLRADILRNLLAQIEAEANEIL 777 (908)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555445555555555555544443
No 268
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.90 E-value=1.1e+02 Score=32.53 Aligned_cols=14 Identities=36% Similarity=0.613 Sum_probs=7.5
Q ss_pred HhhhhhhhHHHHHH
Q 001117 498 ITTQCAWRGKVARR 511 (1151)
Q Consensus 498 i~iQ~~~R~~~arr 511 (1151)
|.+.|.-||.+.-+
T Consensus 75 VTi~C~ERGlLL~r 88 (189)
T PF10211_consen 75 VTIDCPERGLLLLR 88 (189)
T ss_pred HHhCcHHHhHHHHH
Confidence 34556666655444
No 269
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.68 E-value=12 Score=38.79 Aligned_cols=67 Identities=22% Similarity=0.388 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.+.+..+..++..|+.++.+++.....++.++..+.. .+ ...++...+..|+.++..+++.++.++.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~-------~~-----t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSS-------EP-----TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555544444333322 21 1134555566666666666666666665
No 270
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=75.54 E-value=1.2e+02 Score=32.68 Aligned_cols=74 Identities=26% Similarity=0.381 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHH---------HHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE--AESK---------IVQLKTAMHRLEEKVSDMET 679 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~--~~~~---------~~~l~~~~~~Le~~l~~Le~ 679 (1151)
+..+......+...+..|+..+.+++.++.+++.....+..+... ++.+ .......+.++++++..++.
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea 179 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEA 179 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333333211 1111 12344555666666666655
Q ss_pred HHHHH
Q 001117 680 ENQIL 684 (1151)
Q Consensus 680 E~~~l 684 (1151)
..+..
T Consensus 180 ~a~a~ 184 (221)
T PF04012_consen 180 RAEAS 184 (221)
T ss_pred HHHHH
Confidence 55444
No 271
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=75.37 E-value=1.8e+02 Score=34.48 Aligned_cols=156 Identities=20% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------HHH
Q 001117 514 RKLKMAARETGALQAAKNKLEKQVEELTWRLQLE-------------------------------------------KRM 550 (1151)
Q Consensus 514 ~~lk~~a~~~~~L~~~~~~LE~kv~el~~rl~~e-------------------------------------------~~~ 550 (1151)
+.+..+.+.+..++.++..||..+.+-..-+... ++.
T Consensus 137 ~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~~a~~e 216 (384)
T PF03148_consen 137 RTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQRAEKE 216 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 551 RVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEK 630 (1151)
Q Consensus 551 ~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~ 630 (1151)
+..-..-+..-..-+.....++..+....+..+.......+... ++|+.++.+..+++.++++
T Consensus 217 ~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak-----------------~~Le~ql~~~~~ei~~~e~ 279 (384)
T PF03148_consen 217 RQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAK-----------------NELEWQLKKTLQEIAEMEK 279 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 631 KIDETEKKFEETSKISEERLKQALE-----------------AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 631 ~l~ele~~~~e~~~~~~~l~~~l~~-----------------~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.+..+++.+.+...-..-...+++. +..++.++++.+..|++++.+.+..+..|..
T Consensus 280 ~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 280 NIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 272
>PRK04406 hypothetical protein; Provisional
Probab=75.28 E-value=21 Score=31.74 Aligned_cols=11 Identities=0% Similarity=0.344 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 001117 666 AMHRLEEKVSD 676 (1151)
Q Consensus 666 ~~~~Le~~l~~ 676 (1151)
++..|+.++..
T Consensus 40 ~I~~L~~ql~~ 50 (75)
T PRK04406 40 LITKMQDQMKY 50 (75)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 273
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=75.27 E-value=1.3e+02 Score=32.76 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLK-----TLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe-----~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
.+...|-.|+..|- ..+.+|+.++.-.+...++++..-+++-.-++++.+.+...+..+--|++++.+.+.+++.
T Consensus 217 AKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~ 296 (330)
T KOG2991|consen 217 AKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQR 296 (330)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 34444555554443 3444555555444444556666666666666777777777888888888888888888888
Q ss_pred HHHh
Q 001117 684 LRQQ 687 (1151)
Q Consensus 684 lrqq 687 (1151)
+++.
T Consensus 297 l~k~ 300 (330)
T KOG2991|consen 297 LKKG 300 (330)
T ss_pred HHHH
Confidence 8773
No 274
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=75.17 E-value=1.8e+02 Score=34.46 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=9.7
Q ss_pred HHHhhhhHHHhhhhhhhHHH
Q 001117 489 HYMKLKKAAITTQCAWRGKV 508 (1151)
Q Consensus 489 ~~~~~~~a~i~iQ~~~R~~~ 508 (1151)
+|+.+.......|+..-++.
T Consensus 303 k~r~l~~D~nk~~~~~~~mk 322 (622)
T COG5185 303 KWRALKSDSNKYENYVNAMK 322 (622)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 34444445555555544443
No 275
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.04 E-value=13 Score=38.54 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETE 636 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1151)
+..|..+...|+..+..++.++..+.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555544333
No 276
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=74.54 E-value=1.4e+02 Score=32.73 Aligned_cols=28 Identities=18% Similarity=0.560 Sum_probs=17.6
Q ss_pred cchhhhHHHHh----cCCCCccChHHHHHHHh
Q 001117 293 GGVMEAIRISC----AGYPTRKPFDEFVDRFG 320 (1151)
Q Consensus 293 ~gvle~iri~~----~Gyp~r~~~~~F~~ry~ 320 (1151)
+|..+.+.+.. -.||+|-.+++|+..-+
T Consensus 107 sgfad~lkvka~eakidfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 107 SGFADILKVKAAEAKIDFPSRHDWDDFFMDAK 138 (445)
T ss_pred cccchHHhhhHHhhcCCCCcccchHHHHhhhh
Confidence 34445444433 36888888888886544
No 277
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=74.48 E-value=48 Score=32.15 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 001117 567 SALQEMQLQFKESK 580 (1151)
Q Consensus 567 ~~l~~le~~l~~~~ 580 (1151)
.+...++.+++...
T Consensus 13 ~q~QqLq~ql~~~~ 26 (119)
T COG1382 13 AQLQQLQQQLQKVI 26 (119)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 278
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=74.19 E-value=2.1e+02 Score=34.73 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~ 672 (1151)
...+...+++.+.+++.+++..+.+++-+.....+..........+.+.+++..+.++.+..|+.
T Consensus 346 ~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk 410 (570)
T COG4477 346 LGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRK 410 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33455666666666666666666665544444444444444444444444444444444444433
No 279
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.06 E-value=80 Score=33.44 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 522 ETGALQAAKNKLEKQVEELTWRLQLE 547 (1151)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~rl~~e 547 (1151)
.+..|++....++.++.+++.+++..
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555533
No 280
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=73.94 E-value=1.2e+02 Score=31.73 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK----QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~----~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+..|...+.+|+.+..+|+.-.--+.+...+-++...+... ...-..+++..++.++++|+.+.++|-.||..|+.
T Consensus 57 IR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 57 IRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444555555555555554443333333222222222111 02334677888999999999999999999999988
Q ss_pred hccc
Q 001117 687 QSLL 690 (1151)
Q Consensus 687 q~l~ 690 (1151)
--+-
T Consensus 137 lcl~ 140 (195)
T PF10226_consen 137 LCLY 140 (195)
T ss_pred HHHH
Confidence 5433
No 281
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=73.69 E-value=69 Score=30.35 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+++..+..+..++++++.++.++.+++.++..+
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555443
No 282
>PTZ00121 MAEBL; Provisional
Probab=73.64 E-value=3.5e+02 Score=36.95 Aligned_cols=7 Identities=43% Similarity=1.141 Sum_probs=2.9
Q ss_pred eeEecCC
Q 001117 266 YIRCVKP 272 (1151)
Q Consensus 266 firCIkP 272 (1151)
|-+|+-|
T Consensus 826 ySyClgp 832 (2084)
T PTZ00121 826 YSYCLGP 832 (2084)
T ss_pred HHhhcCc
Confidence 3344444
No 283
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=73.64 E-value=1.5e+02 Score=32.84 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+.+++..-++.+.++++++..|+.
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~ 214 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRA 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555
No 284
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=73.63 E-value=2.2e+02 Score=34.62 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
....++.+++.++..++.++...+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554443
No 285
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=73.55 E-value=28 Score=35.34 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+....|..++.+|++.+.++.+.....+.++.++...+. + .++++++.+|...+...++.+..++
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~-------eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----T-------EEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----h-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666555555554444333221 2 2344445555555555555555544
No 286
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=73.42 E-value=94 Score=30.28 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.......+..+..++..|+..+..+++.+...+.
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666666554
No 287
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=73.41 E-value=1.8e+02 Score=33.54 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+--+.+++=|+.+|+.|+.|++...
T Consensus 515 RVKEsEiQYLKqEissLkDELQtal 539 (593)
T KOG4807|consen 515 RVKESEIQYLKQEISSLKDELQTAL 539 (593)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666667777777777776543
No 288
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=73.09 E-value=1.7e+02 Score=33.00 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001117 563 AKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1151)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~ 642 (1151)
+..+.++..-+.++.+++...+.+..+..+-.....+ -++++..|..++--|++++++..++...-++....+
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes-------~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini 254 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES-------LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI 254 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444455555555555554444444443333222111 245678888888889999998888877666666666
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 643 SKISEERLKQALE-AESKIVQLKTAMHRLEEKVSDMETE 680 (1151)
Q Consensus 643 ~~~~~~l~~~l~~-~~~~~~~l~~~~~~Le~~l~~Le~E 680 (1151)
.....+....+.. .++...-+++..++|-.+...|++.
T Consensus 255 Q~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr 293 (305)
T PF14915_consen 255 QDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKER 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6555554444422 2222233444444444444333333
No 289
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=72.23 E-value=2.8e+02 Score=35.24 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDM-EEAKTQENAKLQSALQEMQLQFKES 579 (1151)
Q Consensus 525 ~L~~~~~~LE~kv~el~~rl~~e~~~~~~l-e~~~~~e~~~L~~~l~~le~~l~~~ 579 (1151)
-|+..+..|.+++.-|.++|.+.++....- ...-.-|...|+.-.--|+.++.+.
T Consensus 391 plrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es 446 (861)
T PF15254_consen 391 PLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQES 446 (861)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 344455566666666666665433211000 0000134445555555555555443
No 290
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=72.19 E-value=2.3e+02 Score=34.31 Aligned_cols=25 Identities=24% Similarity=0.334 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1151)
+.+..+......|...+..+...+.
T Consensus 351 ~sv~~l~~~lkDLd~~~~aLs~rld 375 (531)
T PF15450_consen 351 DSVAELMRQLKDLDDHILALSWRLD 375 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4445555555555555555555554
No 291
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=71.59 E-value=1.9e+02 Score=32.92 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=4.9
Q ss_pred hhhHHHhHH
Q 001117 812 MAYWLSNTS 820 (1151)
Q Consensus 812 l~fWLsN~~ 820 (1151)
+.=|-+-..
T Consensus 340 l~qW~~dL~ 348 (401)
T PF06785_consen 340 LAQWETDLQ 348 (401)
T ss_pred HHHHHHHHH
Confidence 455665544
No 292
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.50 E-value=63 Score=27.82 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001117 618 NEKLKTL 624 (1151)
Q Consensus 618 ~~kLe~~ 624 (1151)
+..|.++
T Consensus 34 nn~l~~e 40 (79)
T COG3074 34 NNSLSQE 40 (79)
T ss_pred hhHhHHH
Confidence 3333333
No 293
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.49 E-value=3.4e+02 Score=35.87 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..++..+..++++..++..++.....
T Consensus 447 ~~l~~~~~~~~~~~~e~n~eL~~~~~ 472 (1141)
T KOG0018|consen 447 DSLESLVSSAEEEPYELNEELVEVLD 472 (1141)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34444444444444455555544443
No 294
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=71.21 E-value=38 Score=37.42 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 645 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 645 ~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+.+....+..++++++.++..++..|+.++..|+.+|-.|-.
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666666666666666666655533
No 295
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=71.15 E-value=2.4e+02 Score=35.08 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=4.4
Q ss_pred HHHHhcCccC
Q 001117 1066 YRICTLYWDD 1075 (1151)
Q Consensus 1066 ~kil~~Y~~d 1075 (1151)
++.|..|...
T Consensus 742 V~~l~~Fq~~ 751 (811)
T KOG4364|consen 742 VRELSDFQDS 751 (811)
T ss_pred HHHHHhcccc
Confidence 3444444433
No 296
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=70.92 E-value=1.3e+02 Score=35.71 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSDME 678 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le 678 (1151)
+++++-++..+.+|.++|
T Consensus 301 Rdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 301 RDIWEVMESCQTRISKLE 318 (395)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456666677777777777
No 297
>PRK10869 recombination and repair protein; Provisional
Probab=70.76 E-value=2.8e+02 Score=34.65 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
+..+..|+.++..++.++..+-.++...|++
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666654
No 298
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.27 E-value=57 Score=30.60 Aligned_cols=79 Identities=29% Similarity=0.321 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 607 DHAVVEELTSENEKLKTLVSSLEKKIDETE---------KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1151)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele---------~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~L 677 (1151)
.....+.+..+..+|+..++.|+..+..+. +.+..++...+....++. ..+...+..++..|+.+...+
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR--~rK~~~l~~~i~~l~~ke~~l 87 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVR--SRKDQLLMEQIEELKKKEREL 87 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777778777777777655332 122233333322222222 223345777888888888888
Q ss_pred HHHHHHHHHh
Q 001117 678 ETENQILRQQ 687 (1151)
Q Consensus 678 e~E~~~lrqq 687 (1151)
+++|..|+++
T Consensus 88 ~~en~~L~~~ 97 (100)
T PF01486_consen 88 EEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 299
>PRK02119 hypothetical protein; Provisional
Probab=69.75 E-value=28 Score=30.81 Aligned_cols=14 Identities=7% Similarity=0.292 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 001117 664 KTAMHRLEEKVSDM 677 (1151)
Q Consensus 664 ~~~~~~Le~~l~~L 677 (1151)
++++..|+.++..|
T Consensus 36 q~~id~L~~ql~~L 49 (73)
T PRK02119 36 QFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 300
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=69.73 E-value=2.3e+02 Score=33.31 Aligned_cols=36 Identities=31% Similarity=0.555 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 503 AWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTW 542 (1151)
Q Consensus 503 ~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~ 542 (1151)
.|++.+.+ .+.+.+.+...|...+..||..+..+..
T Consensus 84 ~Wk~el~~----ele~l~~E~~~L~~~k~rle~~L~~~~~ 119 (421)
T KOG2685|consen 84 FWKGELDR----ELEDLAAEIDDLLHEKRRLERALNALAL 119 (421)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45655543 3556666777788788888877766653
No 301
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.57 E-value=2.3e+02 Score=33.22 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=7.5
Q ss_pred hhhHHHhHHHHHHHH
Q 001117 812 MAYWLSNTSTLLFLL 826 (1151)
Q Consensus 812 l~fWLsN~~~Ll~~l 826 (1151)
+-.|=-+..++++-|
T Consensus 243 ~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTL 257 (459)
T ss_pred eeeeeccchhhhhhh
Confidence 344555555555543
No 302
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=69.57 E-value=24 Score=33.57 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
.+.+-.+..+...+..+++.++.+-..+.+.+....+.. ....++..+...+.+++..+++++..+++++..+
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777766665555555444322 1123344445556666666666666666666543
No 303
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=69.47 E-value=2.7e+02 Score=33.87 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
+...++...+.++..+++++...+..++.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566666667777777766666665543
No 304
>PRK04406 hypothetical protein; Provisional
Probab=69.34 E-value=35 Score=30.34 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
|.+.+.+.+.+|..|+.++..+
T Consensus 30 LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 30 LNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 305
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=69.27 E-value=1.9e+02 Score=32.06 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001117 616 SENEKLKTLVSSLEKKIDETEKKFEE 641 (1151)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ele~~~~e 641 (1151)
..++.++..+++.++++.+++.++++
T Consensus 70 ~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 70 VYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 306
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=69.23 E-value=55 Score=34.20 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRVD----MEEAKTQENAKLQSALQEMQLQFK 577 (1151)
Q Consensus 519 ~a~~~~~L~~~~~~LE~kv~el~~rl~~e~~~~~~----le~~~~~e~~~L~~~l~~le~~l~ 577 (1151)
+..++..|...+.+||.++.++..+++..+....+ .|.....++.-|++.+..|+.+++
T Consensus 190 ~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 190 ATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777888999999998888755433221 222223445555555555555544
No 307
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=68.79 E-value=2.2e+02 Score=33.60 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
-+.+.++..++.++.--+..++.++.
T Consensus 242 ~~~~del~Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 242 IEHQDELDSLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666665556666655
No 308
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=68.79 E-value=52 Score=34.86 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001117 665 TAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 665 ~~~~~Le~~l~~Le~E~~~l 684 (1151)
.++.+|+..+..++++....
T Consensus 159 ~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 309
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=68.74 E-value=1.7e+02 Score=31.46 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 001117 477 IQSHCRKYLARLHYMK 492 (1151)
Q Consensus 477 IQ~~~R~~~~r~~~~~ 492 (1151)
.|..|+.......|+.
T Consensus 81 ~~~~a~~~~~~~l~ra 96 (216)
T KOG1962|consen 81 DQPLARTHLLEALFRA 96 (216)
T ss_pred cchHHHHHHHHHHHHH
Confidence 3334444444333333
No 310
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=68.25 E-value=1.3e+02 Score=38.36 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=9.9
Q ss_pred ccchhhH-HHhHHHHHHHHHH
Q 001117 809 NDHMAYW-LSNTSTLLFLLQR 828 (1151)
Q Consensus 809 ~~~l~fW-LsN~~~Ll~~lq~ 828 (1151)
+..+..| ..++-.+..+|+.
T Consensus 480 V~~~t~~~V~s~~~v~~ll~~ 500 (670)
T KOG0239|consen 480 VPLLTVIKVGSSEEVDILLEI 500 (670)
T ss_pred cccceEEecCCHHHHHHHHHH
Confidence 3344444 4555555555543
No 311
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=68.15 E-value=2e+02 Score=36.61 Aligned_cols=6 Identities=33% Similarity=0.418 Sum_probs=2.3
Q ss_pred HHHHHH
Q 001117 773 TIYKCL 778 (1151)
Q Consensus 773 il~~cl 778 (1151)
||++++
T Consensus 420 iipral 425 (670)
T KOG0239|consen 420 IIPRAL 425 (670)
T ss_pred ccHHHH
Confidence 333333
No 312
>PF14992 TMCO5: TMCO5 family
Probab=67.71 E-value=1e+02 Score=34.48 Aligned_cols=7 Identities=57% Similarity=0.975 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 001117 569 LQEMQLQ 575 (1151)
Q Consensus 569 l~~le~~ 575 (1151)
+.+++.+
T Consensus 65 l~~le~e 71 (280)
T PF14992_consen 65 LQELELE 71 (280)
T ss_pred HHHHHhh
Confidence 3444433
No 313
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.58 E-value=50 Score=39.49 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQAL--------EAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~--------~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
.+..|-.+.+.++.+++.+..+.+.+.++.+.+.++......++. +++++..+++.+...++..+..|...+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333333333332 223333444444444444444444444
No 314
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=67.43 E-value=1.9e+02 Score=31.50 Aligned_cols=7 Identities=43% Similarity=0.914 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001117 670 LEEKVSD 676 (1151)
Q Consensus 670 Le~~l~~ 676 (1151)
+++++.+
T Consensus 171 ~e~kiee 177 (225)
T COG1842 171 MEEKIEE 177 (225)
T ss_pred HHHHHHH
Confidence 3333333
No 315
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=67.41 E-value=33 Score=31.51 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 527 QAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT--------------QENAKLQSALQEMQLQFKESKEK 582 (1151)
Q Consensus 527 ~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~~--------------~e~~~L~~~l~~le~~l~~~~~~ 582 (1151)
......||..|.+|+.+|+.|...+..++.+.. ....+|-.++.-+|.++..++..
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999999988887654 23345555555555555555443
No 316
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=67.40 E-value=82 Score=33.39 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
...+.+..++..+..+++.+...+.+=
T Consensus 156 ~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 156 AKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555566666555555443
No 317
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.12 E-value=2.5e+02 Score=32.72 Aligned_cols=156 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhcccccc
Q 001117 531 NKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKE--------KLMKEIEVAKKEAEKVPVVQE 602 (1151)
Q Consensus 531 ~~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~--------~l~~e~~~~~~l~ee~~~~~e 602 (1151)
.+...+..++-..+++........-++...+...|+.++.+...+++.+++ .-++-..-.+.-.++.++++-
T Consensus 9 ~e~nqkrk~~~~a~ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa 88 (542)
T KOG0993|consen 9 QEFNQKRKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQA 88 (542)
T ss_pred HHHHHhhhhcccchhhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHH
Q ss_pred ccch-----hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 603 VPVI-----DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE------TSKISEERLKQALEAESKIVQLKTAMHRLE 671 (1151)
Q Consensus 603 ~~~~-----e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e------~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le 671 (1151)
.... +-.....|+.+...+.+.-..++.++.++...+.+ ++++..+....-+.+..-+.-.++++.+|+
T Consensus 89 ~~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk 168 (542)
T KOG0993|consen 89 SQKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELK 168 (542)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 001117 672 EKVSDMETENQILRQ 686 (1151)
Q Consensus 672 ~~l~~Le~E~~~lrq 686 (1151)
.++.+-+..++++.+
T Consensus 169 ~kl~~aE~~i~El~k 183 (542)
T KOG0993|consen 169 KKLAKAEQRIDELSK 183 (542)
T ss_pred HHHHhHHHHHHHHHh
No 318
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=66.61 E-value=1e+02 Score=29.05 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~ 675 (1151)
|...+.-|+..+-+.+....++.+.+...+..+..+...++.+.=...+|.+.+..|++++.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444433333333333333333333334444444444444444
No 319
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=66.53 E-value=88 Score=29.28 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
++....++.++..|+.++..++.+++.++
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443
No 320
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=66.19 E-value=1e+02 Score=29.56 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
..+..+..++++...++.++.+++.++
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 321
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=66.14 E-value=1.9 Score=55.43 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001117 561 ENAKLQSALQEMQLQFKESKE 581 (1151)
Q Consensus 561 e~~~L~~~l~~le~~l~~~~~ 581 (1151)
+...++-++..|+.++..|..
T Consensus 306 el~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 306 ELAELQLENEKLEDELNSWES 326 (722)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666665554
No 322
>PRK00846 hypothetical protein; Provisional
Probab=66.08 E-value=36 Score=30.41 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 660 IVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 660 ~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+...+..+..|+.++..|.+.++..
T Consensus 36 v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 36 LADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444433
No 323
>PRK02793 phi X174 lysis protein; Provisional
Probab=65.87 E-value=37 Score=29.95 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~ 681 (1151)
.+.++..|+.++..|.+.+
T Consensus 34 Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 34 HEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444443333333
No 324
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=65.76 E-value=54 Score=31.23 Aligned_cols=69 Identities=28% Similarity=0.279 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
...++.+...++++++.+.+.+.-.+.....++...+.++.++...... -.++..++..++.+++..++
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~ 72 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQ 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666665555555555555555444333322222 34455666666666666665
No 325
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=65.50 E-value=23 Score=42.35 Aligned_cols=20 Identities=5% Similarity=0.222 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001117 664 KTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 664 ~~~~~~Le~~l~~Le~E~~~ 683 (1151)
+++++++++++..|+.+++.
T Consensus 103 e~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444333
No 326
>PRK04325 hypothetical protein; Provisional
Probab=65.16 E-value=40 Score=29.88 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 001117 665 TAMHRLEEKVSDM 677 (1151)
Q Consensus 665 ~~~~~Le~~l~~L 677 (1151)
+++..|+.++..|
T Consensus 37 ~~I~~L~~ql~~L 49 (74)
T PRK04325 37 QTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 327
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=64.93 E-value=2e+02 Score=30.72 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 001117 673 KVSDMETENQ 682 (1151)
Q Consensus 673 ~l~~Le~E~~ 682 (1151)
++++|..|+.
T Consensus 139 e~erL~aeL~ 148 (202)
T PF06818_consen 139 EVERLRAELQ 148 (202)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 328
>PRK09343 prefoldin subunit beta; Provisional
Probab=64.82 E-value=1.4e+02 Score=29.08 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
..++++...++.++.+++..+..+
T Consensus 88 k~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 88 RTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 329
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=64.66 E-value=1.9e+02 Score=30.30 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ 633 (1151)
.+.+..+..+|+.+++.++.++.
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444
No 330
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=64.63 E-value=5e+02 Score=35.27 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=12.3
Q ss_pred ecCCHHHHHHHHHHHHHHHHHH
Q 001117 25 KWLDPEAAAVSRDALAKIVYSR 46 (1151)
Q Consensus 25 ~~l~~~~a~~~rdalak~lY~~ 46 (1151)
..-|-.+=...-|+++-+||..
T Consensus 36 ~G~tGaGKStildai~~aLyg~ 57 (1047)
T PRK10246 36 TGPTGAGKTTLLDAICLALYHE 57 (1047)
T ss_pred ECCCCCCHHHHHHHHHHHhcCC
Confidence 3334444455567777777763
No 331
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=64.55 E-value=1.3e+02 Score=28.65 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 656 ~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.++.+..++..++.|+.+...++..+..+++
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544
No 332
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=64.51 E-value=1.2e+02 Score=35.58 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001117 526 LQAAKNKLEKQVEELTWRLQ 545 (1151)
Q Consensus 526 L~~~~~~LE~kv~el~~rl~ 545 (1151)
+...+.+.+.++.++..++.
T Consensus 4 ~~s~~s~~dqr~~~~~~~la 23 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELA 23 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHH
Confidence 34445556666666655554
No 333
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=64.43 E-value=1.6e+02 Score=34.73 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=3.5
Q ss_pred chHHHHHHH
Q 001117 1006 GLAELELWC 1014 (1151)
Q Consensus 1006 nls~Le~W~ 1014 (1151)
||.-++.||
T Consensus 432 nlK~~~A~v 440 (447)
T KOG2751|consen 432 NLKWLLAWV 440 (447)
T ss_pred ccHHHHHHH
Confidence 333334444
No 334
>PF13166 AAA_13: AAA domain
Probab=64.40 E-value=4.1e+02 Score=34.21 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 658 SKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 658 ~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+..++..+..++..+..++.++..++.
T Consensus 424 ~~i~~~~~~~~~~~~~~~~~~~~i~~l~~ 452 (712)
T PF13166_consen 424 KEINSLEKKLKKAKEEIKKIEKEIKELEA 452 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 335
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=64.37 E-value=99 Score=27.42 Aligned_cols=12 Identities=42% Similarity=0.648 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 001117 611 VEELTSENEKLK 622 (1151)
Q Consensus 611 ~~~L~~e~~kLe 622 (1151)
+..|..|-.+|.
T Consensus 14 Ia~L~eEGekLS 25 (74)
T PF12329_consen 14 IAQLMEEGEKLS 25 (74)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 336
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=64.18 E-value=76 Score=27.42 Aligned_cols=53 Identities=21% Similarity=0.097 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 532 KLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAE 595 (1151)
Q Consensus 532 ~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~e 595 (1151)
.|+.++..|-.+.+ ..+.|+..|..+...+..+-..+.+.......++..++.
T Consensus 4 ~Le~kle~Li~~~~-----------~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 4 ALAAQVEHLLEYLE-----------RLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655554444 344455555555555555554444444444444444443
No 337
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=64.11 E-value=1.8e+02 Score=29.93 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 560 QENAKLQSALQEMQLQFKE 578 (1151)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~ 578 (1151)
+|...++.++++++.++..
T Consensus 27 ~E~~~l~~EL~evk~~v~~ 45 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSE 45 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 338
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=63.82 E-value=53 Score=39.43 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=39.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 629 EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 629 ~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
..++.++|.+..++..+.++...+++++++.+.+-+.++..|+..++..+-..++++++
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 33445556666666666666666666777777777777777777777777777777664
No 339
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=63.30 E-value=7 Score=50.38 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
.|+.++..|+..+..|+.++..++
T Consensus 507 ~L~~~~~~Le~e~~~L~~~~~~Le 530 (722)
T PF05557_consen 507 ELQKEIEELERENERLRQELEELE 530 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 340
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.18 E-value=3.2e+02 Score=32.47 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 001117 615 TSENEKLKTLVSSLEKKI 632 (1151)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l 632 (1151)
..|+..|++++..+++++
T Consensus 275 q~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 344455555555554433
No 341
>PRK02119 hypothetical protein; Provisional
Probab=63.07 E-value=45 Score=29.48 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
|.+.+.+.+..|..|+.++..+
T Consensus 28 LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 28 LNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 342
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.82 E-value=1.3e+02 Score=28.01 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 649 l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
+..+.+..+..+..++..+..++.++.+++..+.
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666666666666666553
No 343
>PRK12704 phosphodiesterase; Provisional
Probab=62.73 E-value=3.8e+02 Score=33.21 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=4.2
Q ss_pred HHHHHHHhHH
Q 001117 1030 KHIRQAVGFL 1039 (1151)
Q Consensus 1030 ~~i~Qa~~lL 1039 (1151)
..|+++++.|
T Consensus 417 a~IV~~ADaL 426 (520)
T PRK12704 417 AVLVAAADAI 426 (520)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 344
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=62.71 E-value=2.5e+02 Score=31.36 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE 657 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~ 657 (1151)
..+..+...++..++.+...-..++.++++...+.+...+++..++
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555554444555555544444444445554443
No 345
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=62.49 E-value=2.2e+02 Score=30.32 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq~ 688 (1151)
.+...+.++.+++..++.|..+|.+...-+..|+|..
T Consensus 130 el~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs 166 (205)
T PF12240_consen 130 ELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRS 166 (205)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445567778888889999999999999999998854
No 346
>PRK00295 hypothetical protein; Provisional
Probab=62.30 E-value=54 Score=28.54 Aligned_cols=13 Identities=15% Similarity=0.440 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 001117 665 TAMHRLEEKVSDM 677 (1151)
Q Consensus 665 ~~~~~Le~~l~~L 677 (1151)
+++..|+.++..|
T Consensus 33 ~~I~~L~~ql~~L 45 (68)
T PRK00295 33 RVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 347
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=62.25 E-value=1.3e+02 Score=28.31 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
++.+.++++..|+..+..|.+-..+||...
T Consensus 67 ~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 67 QIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555443
No 348
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=62.02 E-value=11 Score=46.18 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=22.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHH
Q 001117 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVC 451 (1151)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~~~r~a~i~ 451 (1151)
.-|.+||+.||.|.+||.|.++|.-+..
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999988888875544
No 349
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.93 E-value=7.7 Score=47.72 Aligned_cols=23 Identities=57% Similarity=0.729 Sum_probs=14.7
Q ss_pred ccchhhhhHHHHHHHHHHHHHHH
Q 001117 421 RREASCLRIQRDLRMYLAKKAYK 443 (1151)
Q Consensus 421 r~~~AAi~IQ~~~R~~~~rk~y~ 443 (1151)
|+++||+.||++||+|.+|++|.
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666654
No 350
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=61.76 E-value=1.4e+02 Score=29.53 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
+.+....+.+...+++.++..+..|+..+.
T Consensus 91 V~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 91 VTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443
No 351
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=61.57 E-value=67 Score=28.57 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1151)
+..++.|.+|+=.|+-.+--|++.+.
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34566777777777777776666665
No 352
>PLN03188 kinesin-12 family protein; Provisional
Probab=61.48 E-value=2.5e+02 Score=37.78 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=10.5
Q ss_pred ccccccCcHHHHHHhhc
Q 001117 121 SYIEFVDNQDILDLIEK 137 (1151)
Q Consensus 121 ~~i~~~dn~~~ldlie~ 137 (1151)
++++.+ |..+.||+..
T Consensus 233 SyLEIY-NEkI~DLLsp 248 (1320)
T PLN03188 233 SFLEIY-NEQITDLLDP 248 (1320)
T ss_pred EEEeee-cCcceecccc
Confidence 445555 5668999864
No 353
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=61.23 E-value=3.7e+02 Score=32.66 Aligned_cols=17 Identities=24% Similarity=0.514 Sum_probs=6.5
Q ss_pred HHHHHHHHhHHHHHHHH
Q 001117 623 TLVSSLEKKIDETEKKF 639 (1151)
Q Consensus 623 ~~l~~l~~~l~ele~~~ 639 (1151)
..+.=++++++..+++.
T Consensus 140 ~ll~Pl~e~l~~f~~~v 156 (475)
T PRK10361 140 SLLSPLREQLDGFRRQV 156 (475)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 33333333333333333
No 354
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=60.93 E-value=2.5e+02 Score=30.52 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
..|+.....++..+..+++++++....++... .+...++..++.+...+-.++-+++..+..|+.|+..++++
T Consensus 139 ~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q---~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 139 EQLEAMLKRLEKELAKLKKEIEEVNRERKRRQ---EEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555444443322211 11223345566666666666666666677777776666653
No 355
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=60.80 E-value=42 Score=29.30 Aligned_cols=27 Identities=15% Similarity=0.414 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 660 IVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 660 ~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+.+|.+.+.+.+.+|..|+..+..+..
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 356
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=60.47 E-value=42 Score=30.52 Aligned_cols=62 Identities=18% Similarity=0.357 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001117 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1151)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq~ 688 (1151)
.|++.+++.+...+..++..+.++...+ -..+.-..+++++..+.+.+...+.+++.|++.+
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~e-----------Ls~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRE-----------LSPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccC-----------CChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 4555555555555555555554433211 0112234566777778888888888888887743
No 357
>PRK00736 hypothetical protein; Provisional
Probab=60.17 E-value=50 Score=28.74 Aligned_cols=13 Identities=8% Similarity=0.427 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 001117 665 TAMHRLEEKVSDM 677 (1151)
Q Consensus 665 ~~~~~Le~~l~~L 677 (1151)
+++..|+.++..|
T Consensus 33 ~~i~~L~~ql~~L 45 (68)
T PRK00736 33 KTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 358
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=60.09 E-value=3e+02 Score=31.23 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+++...+...|+.++.+++.+-..+++|++.|+.
T Consensus 247 i~EfdiEre~LRAel~ree~r~K~lKeEmeSLke 280 (561)
T KOG1103|consen 247 IEEFDIEREFLRAELEREEKRQKMLKEEMESLKE 280 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666667777766665
No 359
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.87 E-value=4e+02 Score=32.50 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001117 523 TGALQAAKNKLEKQVEELTW 542 (1151)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~ 542 (1151)
++...+....|..+|..++.
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~ 352 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQA 352 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555544
No 360
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.77 E-value=2.8e+02 Score=34.98 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 659 KIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 659 ~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
.+..|...+..|+++....-..++.+.
T Consensus 227 tl~~L~~~v~~l~~~k~qr~~kl~~l~ 253 (660)
T KOG4302|consen 227 TLDRLDKMVKKLKEEKKQRLQKLQDLR 253 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555544444434444443
No 361
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=59.73 E-value=64 Score=33.12 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKI 645 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~ 645 (1151)
-++.+...+..|+..+....+.+..+++++...+..
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~ 56 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAA 56 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888877777777766655544433
No 362
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.59 E-value=76 Score=38.04 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEE-TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e-~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~ 676 (1151)
+++.+.++++.|+++.+.|+++......++.. +.....++..+.++++.+..+++..+.+|+.++..
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566666666666666555555544432 22334455555566666666777777777776654
No 363
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.56 E-value=60 Score=28.38 Aligned_cols=32 Identities=9% Similarity=0.220 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++...+.+.+..+..++.++..|-+.+..++.
T Consensus 26 eLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 26 ELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333444455555555555555555554443
No 364
>smart00338 BRLZ basic region leucin zipper.
Probab=59.44 E-value=96 Score=26.49 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
..+.+++.++..|+.++.+|..++..|+.++..++++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777778888888888888888888777764
No 365
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.43 E-value=3e+02 Score=32.32 Aligned_cols=9 Identities=22% Similarity=0.745 Sum_probs=6.1
Q ss_pred hhhhHHHHH
Q 001117 502 CAWRGKVAR 510 (1151)
Q Consensus 502 ~~~R~~~ar 510 (1151)
.-||.++.+
T Consensus 216 kDWR~hleq 224 (359)
T PF10498_consen 216 KDWRSHLEQ 224 (359)
T ss_pred chHHHHHHH
Confidence 668877654
No 366
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=59.37 E-value=71 Score=38.51 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq~ 688 (1151)
+++|-.|+..|-+.-.+|.--..++=.+..++.-+..-+...++..+.....+++++.+|++++..++.|....|+++
T Consensus 303 VeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~ 380 (832)
T KOG2077|consen 303 VENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKA 380 (832)
T ss_pred HHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444443333333222223333333333333444444444444445566677777777777777766666643
No 367
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=59.31 E-value=2.9e+02 Score=30.79 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR 669 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~ 669 (1151)
+..........+.+++..+.+......+.......-...+.+.+++...+++....
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~ 238 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNE 238 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444443333333333333333333333333333
No 368
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=59.27 E-value=26 Score=30.20 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001117 659 KIVQLKTAMHRLEEKVS 675 (1151)
Q Consensus 659 ~~~~l~~~~~~Le~~l~ 675 (1151)
++..++.++..+++.+.
T Consensus 47 kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 47 KLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 369
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=59.27 E-value=70 Score=33.88 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 663 LKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
+.+++++|+.++.+.+.|.+.++.|
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 370
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=59.05 E-value=1.2e+02 Score=34.97 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHhHhhhcccCccCC
Q 001117 972 IFTQTFSYINVQLFNSLLLRRECCTF 997 (1151)
Q Consensus 972 ~f~Qlf~~ina~lfN~Ll~r~~~cs~ 997 (1151)
++.|.|-+-|+.++-.+-...+|.-|
T Consensus 270 f~~~~~q~yn~~~l~~~~~~~~~~ew 295 (330)
T PF07851_consen 270 FFGQFFQLYNAYTLFELSYHPECREW 295 (330)
T ss_pred HHHHHHHHHHHHHHHHHHcCccchHH
Confidence 46788888888887777555544334
No 371
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=58.99 E-value=34 Score=40.95 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 661 VQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
..+..+.++++++|+++++|++.|+.|
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 334455666666666777777666654
No 372
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=58.90 E-value=2.6e+02 Score=30.14 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001117 564 KLQSALQEMQLQFKESK 580 (1151)
Q Consensus 564 ~L~~~l~~le~~l~~~~ 580 (1151)
.++.++.+.+....+++
T Consensus 55 ~le~~~~~~~~~~~~~~ 71 (221)
T PF04012_consen 55 RLERKLDEAEEEAEKWE 71 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 373
>PF15294 Leu_zip: Leucine zipper
Probab=58.35 E-value=2.3e+02 Score=31.79 Aligned_cols=141 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhcc
Q 001117 521 RETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKL--MKEIEVAKKEAEKVP 598 (1151)
Q Consensus 521 ~~~~~L~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l--~~e~~~~~~l~ee~~ 598 (1151)
.++.+|++.+..|.+++..++.+.. ....|..+++.++.+++.......... ......+..+...+.
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at-----------~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a 200 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQAT-----------SALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMA 200 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHH
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 001117 599 VVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA---ESKIVQLKTAMHRLEEKVS 675 (1151)
Q Consensus 599 ~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~---~~~~~~l~~~~~~Le~~l~ 675 (1151)
.++ .++++...........++..+......+-.+........+.++.. ......+...+..=.+++.
T Consensus 201 ~lK----------~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiK 270 (278)
T PF15294_consen 201 ALK----------SELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIK 270 (278)
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHH
Q ss_pred HHHHHHH
Q 001117 676 DMETENQ 682 (1151)
Q Consensus 676 ~Le~E~~ 682 (1151)
+|+..+.
T Consensus 271 eLRkrl~ 277 (278)
T PF15294_consen 271 ELRKRLA 277 (278)
T ss_pred HHHHHhc
No 374
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=58.27 E-value=2.7e+02 Score=30.01 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 659 KIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 659 ~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
.+..|+..++..+-++..|+..++.
T Consensus 162 e~~aLqa~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 162 ELLALQASLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445444443
No 375
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=57.81 E-value=15 Score=30.46 Aligned_cols=30 Identities=37% Similarity=0.581 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 658 ~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
++++-|++++.+|++++..|+.||..+|+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678899999999999999999999984
No 376
>PRK00295 hypothetical protein; Provisional
Probab=57.68 E-value=74 Score=27.72 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSD 676 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~ 676 (1151)
++.+..+++++..|.+++..
T Consensus 32 q~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 32 QRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 377
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=57.51 E-value=3.8e+02 Score=32.27 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 001117 534 EKQVEELTWR 543 (1151)
Q Consensus 534 E~kv~el~~r 543 (1151)
|+.|.+|..+
T Consensus 229 E~~VN~Ls~r 238 (434)
T PRK15178 229 EQHVNTVSAR 238 (434)
T ss_pred HHHHHHHHHH
Confidence 3444455444
No 378
>PTZ00121 MAEBL; Provisional
Probab=57.41 E-value=6.8e+02 Score=34.46 Aligned_cols=10 Identities=10% Similarity=0.620 Sum_probs=3.9
Q ss_pred eEEEeeCcce
Q 001117 184 FTICHYAGDV 193 (1151)
Q Consensus 184 F~i~H~ag~V 193 (1151)
|+.+-.+|..
T Consensus 777 fG~~GlGGRL 786 (2084)
T PTZ00121 777 YGLYGFGGRL 786 (2084)
T ss_pred eeeeccCccc
Confidence 3333334443
No 379
>PRK02793 phi X174 lysis protein; Provisional
Probab=57.21 E-value=65 Score=28.39 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 658 SKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 658 ~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
..+..|.+.+.+.+..|..|+.++..+
T Consensus 22 ~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 22 ITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444
No 380
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=56.83 E-value=4.2e+02 Score=31.86 Aligned_cols=188 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHH
Q 001117 495 KAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAK-----TQENAKLQSAL 569 (1151)
Q Consensus 495 ~a~i~iQ~~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~-----~~e~~~L~~~l 569 (1151)
.+..........+.....-.+......-..-+.....+++.++.+.+.++..=++.+.-..-.. ......+..++
T Consensus 145 ~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l 224 (444)
T TIGR03017 145 FAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQL 224 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH------------------HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 570 QEMQLQFKESKEK------------------LMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKK 631 (1151)
Q Consensus 570 ~~le~~l~~~~~~------------------l~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~ 631 (1151)
...+.+..+.... ...-..++..+..++..+........-++..+..+.+.++..+......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~ 304 (444)
T TIGR03017 225 VAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKK 304 (444)
T ss_pred HHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 632 ID-ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 632 l~-ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+. .++.....+......+...+++.+.+...+... +.+...|+.+.+..+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~----~~~~~~L~r~~~~~~~ 356 (444)
T TIGR03017 305 VTSSVGTNSRILKQREAELREALENQKAKVLELNRQ----RDEMSVLQRDVENAQR 356 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
No 381
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=56.80 E-value=1.7e+02 Score=31.58 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 507 KVARRELRKLKMAARETGALQAAKNKLEKQVEELT 541 (1151)
Q Consensus 507 ~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~ 541 (1151)
+..||.++..-.+.....+-++...++|-++.+|+
T Consensus 69 K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~ 103 (292)
T KOG4005|consen 69 KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLT 103 (292)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333344455555555554
No 382
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=56.55 E-value=5.7e+02 Score=33.28 Aligned_cols=25 Identities=8% Similarity=-0.008 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 659 KIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 659 ~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
+..+|+++.+-.++....+-...++
T Consensus 377 e~~~L~Re~~~~~~~Y~~ll~r~~e 401 (754)
T TIGR01005 377 DLDALQRDAAAKRQLYESYLTNYRQ 401 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333
No 383
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.54 E-value=3.2e+02 Score=33.38 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..|..+++.++..+.+++.+++.|.+
T Consensus 518 ~~L~~ElE~~~~~~~~~e~~~evL~~ 543 (852)
T KOG4787|consen 518 IDLVSELEGKIPTIDEIEQCCEVLAA 543 (852)
T ss_pred HHHHHHHHhhcCcHhHHHHHHHHHHH
Confidence 56777777777777788888888776
No 384
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.51 E-value=2.8e+02 Score=33.78 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+.++..+-+.+..|.+++...+++++.++.
T Consensus 486 E~QLs~MSEHLasmNeqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 486 EEQLSMMSEHLASMNEQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556667777777777777777777763
No 385
>PRK04325 hypothetical protein; Provisional
Probab=56.15 E-value=72 Score=28.31 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKV 674 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l 674 (1151)
+..+..++++++.|.+++
T Consensus 36 q~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 36 QQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444444
No 386
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=56.09 E-value=23 Score=40.34 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
..+......++..++++...+..+...+.........+...+....-.+..++..+..+.-.|..|+..++.++..
T Consensus 80 ~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 80 NSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 3344444445555555555555554444444445555555566666666777777777777888888888888763
No 387
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=55.05 E-value=2.3e+02 Score=28.24 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 563 AKLQSALQEMQLQFKESKE 581 (1151)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~ 581 (1151)
..++.+++.+..++..++.
T Consensus 16 ~~l~~~~~~l~~~~~~l~~ 34 (140)
T PRK03947 16 QALQAQIEALQQQLEELQA 34 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555544444433
No 388
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.97 E-value=2.1e+02 Score=37.37 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=7.2
Q ss_pred cccc-ceeeeecccc
Q 001117 350 QIGK-TKVFLRAGQM 363 (1151)
Q Consensus 350 ~~G~-TkVFlr~~~~ 363 (1151)
.+|- .+||.+-|.-
T Consensus 367 ~i~~~~~i~~~ig~~ 381 (782)
T PRK00409 367 EIPVFKEIFADIGDE 381 (782)
T ss_pred cccccceEEEecCCc
Confidence 4554 4566655543
No 389
>PRK09343 prefoldin subunit beta; Provisional
Probab=54.60 E-value=2.2e+02 Score=27.85 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 658 SKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 658 ~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+++.-++..++.|+.+...+++.+..++.
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~ 106 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555554444
No 390
>PRK00736 hypothetical protein; Provisional
Probab=54.59 E-value=76 Score=27.64 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKV 674 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l 674 (1151)
++.+..+++++..|.+++
T Consensus 32 q~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 32 WKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444444
No 391
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=54.48 E-value=13 Score=35.03 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKI-DETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l-~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
....++.++..++.++++|-..| ++..+-.....++.. ..+.+...+++++.+.+..+..++.++..|+.
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~-------~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASLFEEANKMVADARRERA-------ALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666555 233322222222221 22333344444444444455555555555554
No 392
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.37 E-value=2.9e+02 Score=36.06 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=7.6
Q ss_pred CcceEE-eccchhhhhch
Q 001117 190 AGDVTY-QTELFLDKNKD 206 (1151)
Q Consensus 190 ag~V~Y-~~~~fl~kN~d 206 (1151)
.|...| ....+++-|..
T Consensus 213 sg~t~~~ep~~~~~ln~~ 230 (771)
T TIGR01069 213 SGETFYIEPQAIVKLNNK 230 (771)
T ss_pred CCCEEEEEcHHHHHHHHH
Confidence 343333 34445555543
No 393
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=54.20 E-value=2e+02 Score=28.70 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 660 IVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 660 ~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+.......-+.+|++|..||+.+|.
T Consensus 70 ~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 70 LAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 344555566666778888888988887
No 394
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=54.08 E-value=1.2e+02 Score=31.98 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
...+.+...++++..|+.-+...+.|++.|+|
T Consensus 164 ~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 164 SVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555566777777777777777777777754
No 395
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=54.00 E-value=1.3e+02 Score=25.59 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+.+++..+..|+.+...|..++..|+.++..|+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555555555555555443
No 396
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=53.61 E-value=99 Score=26.32 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 645 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 645 ~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
...++...+..++.....|..++..|+.++..|..+++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445555556666666677777777777777776653
No 397
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=53.24 E-value=4.3e+02 Score=30.83 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+...+.++..++.++..|+.+.+....+...+
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l 268 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYEEAQKEKQEL 268 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444443333333333
No 398
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=52.78 E-value=2.6e+02 Score=28.15 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 001117 640 EETSKISEERLKQ 652 (1151)
Q Consensus 640 ~e~~~~~~~l~~~ 652 (1151)
.+..+++..+..+
T Consensus 122 nEknkeK~~Lv~~ 134 (159)
T PF04949_consen 122 NEKNKEKAQLVTR 134 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 399
>PRK11519 tyrosine kinase; Provisional
Probab=52.78 E-value=4.4e+02 Score=34.11 Aligned_cols=11 Identities=45% Similarity=0.588 Sum_probs=5.5
Q ss_pred HHhccCcCCCH
Q 001117 1052 ITNDLCPILSV 1062 (1151)
Q Consensus 1052 i~~~~c~~L~~ 1062 (1151)
|+.|..|.+..
T Consensus 639 ViiDtpP~~~v 649 (719)
T PRK11519 639 VLIDTPPILAV 649 (719)
T ss_pred EEEeCCCcccc
Confidence 33455555543
No 400
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=52.27 E-value=3.9e+02 Score=30.14 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETE 636 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1151)
+..+..|..-|+.+++.|+.+|.-.|
T Consensus 110 VKqWLEERR~lQgEmQ~LrDKLAiaE 135 (351)
T PF07058_consen 110 VKQWLEERRFLQGEMQQLRDKLAIAE 135 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777766665433
No 401
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=52.23 E-value=5.7e+02 Score=32.01 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDM 677 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~L 677 (1151)
++.+++++.++++++.++-.++...
T Consensus 348 le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 348 LEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555554444444444
No 402
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.89 E-value=1.5e+02 Score=30.74 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001117 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~ 644 (1151)
...-...|+.+++........+.+..+..+.
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~ 109 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIENRKA 109 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 3333444445555544444444444433333
No 403
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=51.81 E-value=3.4e+02 Score=29.23 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 656 ~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+.+.+..+-.+...|+.....|+.....+++
T Consensus 168 L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 168 LRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555544
No 404
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=51.79 E-value=2e+02 Score=28.60 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 654 LEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 654 ~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+.+++.+..+++.+..+++++..+...+..+
T Consensus 104 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 104 EELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433
No 405
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=51.53 E-value=1.4e+02 Score=30.57 Aligned_cols=13 Identities=15% Similarity=0.544 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 001117 669 RLEEKVSDMETEN 681 (1151)
Q Consensus 669 ~Le~~l~~Le~E~ 681 (1151)
++++++.+|..+.
T Consensus 120 emQe~i~~L~kev 132 (201)
T KOG4603|consen 120 EMQEEIQELKKEV 132 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 406
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.48 E-value=1.4e+02 Score=37.07 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKK 638 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~ 638 (1151)
+.+.+|++++..++.++.+++.++..++..
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 100 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKAL 100 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544443
No 407
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=51.25 E-value=3.3e+02 Score=29.88 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHhHHHHHhHhh
Q 001117 942 SSHWQSIIDSLNTLLSTL----KQNFVPPVLVQKIFTQTFSYINVQLFNSL 988 (1151)
Q Consensus 942 ~~~~~~il~~L~~~~~~l----~~~~v~~~l~~Q~f~Qlf~~ina~lfN~L 988 (1151)
++-.+.+++.+..+...| +.-.+|+.+..-++..+.++++-.+...+
T Consensus 91 s~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~ 141 (234)
T PF10474_consen 91 SSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGY 141 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999998888 78899999999999999988877775554
No 408
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=51.15 E-value=2.1e+02 Score=33.27 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFE 640 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~ 640 (1151)
....|.+++.+|+.+...+.+++++.-....
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~~K~ 175 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVNAKE 175 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665555554444333
No 409
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=50.92 E-value=3.2e+02 Score=35.34 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHH
Q 001117 890 QQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLV 969 (1151)
Q Consensus 890 q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~ 969 (1151)
+.+...+...-...++.+-..+..+|. -|-+..-.|... .......++.+-..++.+|+.++..++.+==
T Consensus 530 ~~le~~v~~gL~~~i~~l~~~v~~iL~--~Qkk~Df~p~~~---~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~----- 599 (710)
T PF07393_consen 530 SRLEEKVNAGLNKGIDVLMNWVEFILS--EQKKTDFKPKED---DLSLDQQPTPACQEVVEFLERHCSLLKGSLD----- 599 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCCcc---ccccccCCCHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 444444555555555555555555554 333333333111 1111134567789999999999999886522
Q ss_pred HHHHHHHHHhHHHHHhHhhhc--ccCccCCcchhHHHhchHHHHHHHhhcccccccccHHHhHHHHHHHhHHhhcccccC
Q 001117 970 QKIFTQTFSYINVQLFNSLLL--RRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRI 1047 (1151)
Q Consensus 970 ~Q~f~Qlf~~ina~lfN~Ll~--r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~ 1047 (1151)
.........=|+..+|+.|+. .+--.|..=|+++..=|...-+++.+-+ .......++-|.+.++|+.++ ..
T Consensus 600 ~~nl~~f~~elg~~l~~~l~~h~kk~~vs~~Gg~~l~~Dl~~Y~~~~~~~~---~~~v~~~F~~L~~l~nl~~v~---~~ 673 (710)
T PF07393_consen 600 GSNLDVFLQELGERLHRLLLKHLKKFTVSSTGGLQLIKDLNEYQDFIRSWG---IPSVDEKFEALKELGNLFIVD---PE 673 (710)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCccCchhHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHhheeec---HH
Confidence 223444445566666666664 3666778999999999999999999866 245668899999999999994 34
Q ss_pred CHHHHHhccC-cCCCHHHHHHHHhc
Q 001117 1048 SYDEITNDLC-PILSVQQLYRICTL 1071 (1151)
Q Consensus 1048 ~~~~i~~~~c-~~L~~~Qi~kil~~ 1071 (1151)
++.+++.+.+ ..+++..|+..+..
T Consensus 674 ~l~~~~~~~~~~~~~~~~i~~fi~~ 698 (710)
T PF07393_consen 674 NLKELCREGQLGRFSPEEIYEFIQR 698 (710)
T ss_pred HHHHHHhhccccCCCHHHHHHHHHH
Confidence 4555554443 35666666666543
No 410
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.83 E-value=1.4e+02 Score=26.30 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDMET 679 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~Le~ 679 (1151)
.+.+.+..+.+++.++.-|-+++.+++.
T Consensus 30 ~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 30 ALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333344444444444444444444433
No 411
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=50.39 E-value=49 Score=30.40 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 659 ~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+..++-.++.-++.+|..||..+..|..
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L~~ 82 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSLYR 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666655544
No 412
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.38 E-value=4.8e+02 Score=34.12 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=4.7
Q ss_pred eccchhhhhc
Q 001117 196 QTELFLDKNK 205 (1151)
Q Consensus 196 ~~~~fl~kN~ 205 (1151)
.....++-|.
T Consensus 225 ep~~~~~ln~ 234 (782)
T PRK00409 225 EPQSVVELNN 234 (782)
T ss_pred EcHHHHHHHH
Confidence 3444555554
No 413
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=50.31 E-value=78 Score=38.10 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+.+-++.++..++..++++|+.+..++.+++....+..+ ..+++.++..++.++++++++++..+++++..+
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE----DAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777776666666554222211 122344444556666666666666666666554
No 414
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=50.20 E-value=1.8e+02 Score=25.89 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001117 614 LTSENEKLKTLVSSLEKKIDETEKKF 639 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1151)
.+..+++|+.+.-+|+-++--+++.+
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l 30 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERL 30 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 415
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.13 E-value=1.5e+02 Score=34.16 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQL 663 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l 663 (1151)
..++|.++-++|++......++++++.+......+.......++.++.+.+..+
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666655544444444444444444444433333
No 416
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.05 E-value=16 Score=45.08 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=7.8
Q ss_pred hhHhhhhHhhhhcchh
Q 001117 400 SAIHIQAACRGQLART 415 (1151)
Q Consensus 400 a~i~IQ~~~Rg~lar~ 415 (1151)
|++.||++||||++|+
T Consensus 32 aa~~iq~~lrsyl~Rk 47 (1096)
T KOG4427|consen 32 AALFIQRVLRSYLVRK 47 (1096)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555555544
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.91 E-value=2.2e+02 Score=37.06 Aligned_cols=8 Identities=0% Similarity=-0.072 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 001117 531 NKLEKQVE 538 (1151)
Q Consensus 531 ~~LE~kv~ 538 (1151)
.++-..+.
T Consensus 492 ~Glp~~ii 499 (771)
T TIGR01069 492 YGIPHFII 499 (771)
T ss_pred hCcCHHHH
Confidence 34444443
No 418
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=49.56 E-value=3.3e+02 Score=28.45 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 552 VDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEI 587 (1151)
Q Consensus 552 ~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~ 587 (1151)
.++....+.+.+.++.+.+.++.++++++.++..+.
T Consensus 65 ~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei 100 (177)
T PF07798_consen 65 SELQNSRKSEFAELRSENEKLQREIEKLRQELREEI 100 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555666666666666666655544333
No 419
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=49.52 E-value=3e+02 Score=27.91 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
.+....++..+++|-.++..++.++..+.
T Consensus 107 ~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 107 EKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444443
No 420
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.47 E-value=7.1e+02 Score=32.30 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=7.6
Q ss_pred HHHHhccCcCCCHH
Q 001117 1050 DEITNDLCPILSVQ 1063 (1151)
Q Consensus 1050 ~~i~~~~c~~L~~~ 1063 (1151)
|=|+.|.-|.+...
T Consensus 642 D~IIIDtPP~~~~~ 655 (726)
T PRK09841 642 DLVIVDTPPMLAVS 655 (726)
T ss_pred CEEEEeCCCccccc
Confidence 33445666666653
No 421
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=49.09 E-value=6e+02 Score=31.35 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhccccc
Q 001117 532 KLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKE----------KLMKEIEVAKKEAEKVPVVQ 601 (1151)
Q Consensus 532 ~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~----------~l~~e~~~~~~l~ee~~~~~ 601 (1151)
.+|...+++.++++ .+...+..+...++.+...+..+.. .+..+......+.++...+.
T Consensus 338 n~e~~~e~~~r~~e-----------~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~ 406 (607)
T KOG0240|consen 338 NLELTAEEWKRKLE-----------KKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSIT 406 (607)
T ss_pred hhHhhHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhh
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 602 EVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 602 e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
-.....+.....++++...|.+++++...++.....-..+++.+..+....+..........+.++.++++.++..+.+.
T Consensus 407 ~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~ 486 (607)
T KOG0240|consen 407 KLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEV 486 (607)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 001117 682 QIL 684 (1151)
Q Consensus 682 ~~l 684 (1151)
...
T Consensus 487 ~e~ 489 (607)
T KOG0240|consen 487 KEV 489 (607)
T ss_pred HHH
No 422
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=49.07 E-value=4e+02 Score=29.32 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 001117 160 FAQKLYQTF 168 (1151)
Q Consensus 160 ~~~kl~~~~ 168 (1151)
..++|....
T Consensus 54 lmerlk~ai 62 (445)
T KOG2891|consen 54 LMERLKGAI 62 (445)
T ss_pred HHHHHHhhc
Confidence 344444433
No 423
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.63 E-value=1.2e+02 Score=38.91 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 458 GMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQV 537 (1151)
Q Consensus 458 g~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv 537 (1151)
....+++-+..++++.|+++|++|||+.+|+..+..-++.-..-..--+.. ..+...++...-.-+...+.|.=+
T Consensus 16 ~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~fd~~~~~~~~~-----e~~~~~~~~L~~Fy~~~~D~~rli 90 (1001)
T KOG0942|consen 16 AEERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFREEFDAVSTRSRGG-----EELTKLARLLVFFYETNKDSERLI 90 (1001)
T ss_pred HHHHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----hhHHHHHHHHHHHhhcccccHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001117 538 EELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEM 572 (1151)
Q Consensus 538 ~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~l 572 (1151)
.-++.=+..-.+.............+.|-.....+
T Consensus 91 ~~~~nl~~~~~~~i~~s~~~~~~~~k~l~~~c~~~ 125 (1001)
T KOG0942|consen 91 MVLQNLLKQKTRLIEFSKRTRLTQLKLLLRKCQRL 125 (1001)
T ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHH
No 424
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=48.58 E-value=8.1e+02 Score=32.71 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 654 LEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 654 ~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
.+.......++..+..+++.+..++..+..+
T Consensus 413 ~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 413 EELEKELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444443
No 425
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=48.56 E-value=1.9e+02 Score=25.43 Aligned_cols=39 Identities=8% Similarity=0.081 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 645 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 645 ~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
....+.............|...+..|..++..|.+.++.
T Consensus 29 sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 29 SYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333344444555555555555554444443
No 426
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=48.42 E-value=4.4e+02 Score=29.56 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.6
Q ss_pred cCCCCccChHHHH
Q 001117 304 AGYPTRKPFDEFV 316 (1151)
Q Consensus 304 ~Gyp~r~~~~~F~ 316 (1151)
-|||--++.+.|-
T Consensus 3 LGypr~iSmenFr 15 (267)
T PF10234_consen 3 LGYPRLISMENFR 15 (267)
T ss_pred CCCCCCCcHHHcC
Confidence 5999888888875
No 427
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=48.40 E-value=1.8e+02 Score=33.79 Aligned_cols=18 Identities=11% Similarity=0.326 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001117 665 TAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 665 ~~~~~Le~~l~~Le~E~~ 682 (1151)
.+|.+|+..+..++....
T Consensus 194 ~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 194 AKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 334444444444444333
No 428
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.36 E-value=85 Score=30.01 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 654 ~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+..++..++..+.+|-++...|+-||+.||.
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555555555554
No 429
>PLN02678 seryl-tRNA synthetase
Probab=48.27 E-value=90 Score=37.72 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+++-.+..+..++..++++++.+..+..+++..+.+.. ....++.++..++.++++.|++++..+++++..+
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~----~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK----EDATELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677777766666666555554322111 1123344455566667777777777777766654
No 430
>PRK00846 hypothetical protein; Provisional
Probab=48.21 E-value=1.6e+02 Score=26.36 Aligned_cols=36 Identities=11% Similarity=-0.006 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.++.-.+..+..|.+.+.+.+..+..|+..+..+..
T Consensus 20 ~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 20 TRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555555555555444
No 431
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=48.09 E-value=3.6e+02 Score=28.49 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
...++...|+.+....+.++..|...+..|+.+
T Consensus 151 q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 151 QARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555543
No 432
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.69 E-value=6.5e+02 Score=31.32 Aligned_cols=8 Identities=25% Similarity=0.816 Sum_probs=4.8
Q ss_pred cccceeee
Q 001117 351 IGKTKVFL 358 (1151)
Q Consensus 351 ~G~TkVFl 358 (1151)
=|+|+.|+
T Consensus 99 ~GrSr~~I 106 (557)
T COG0497 99 DGRSRAFI 106 (557)
T ss_pred CCceeEEE
Confidence 35666666
No 433
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=47.44 E-value=90 Score=28.15 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 648 ~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++..++.+++..+..|-..+...+++...|+.||+-|++
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666666667777776666
No 434
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=47.21 E-value=5.6e+02 Score=30.51 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 649 l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
+..-++..+..+.+|+.++.+|+-=|.=++.|+
T Consensus 218 ~VnP~k~KeQLV~QLkTQItDLErFInFlQ~e~ 250 (621)
T KOG3759|consen 218 LVNPFKEKEQLVDQLKTQITDLERFINFLQDEV 250 (621)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444455555555555554444444443
No 435
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=47.16 E-value=76 Score=28.93 Aligned_cols=25 Identities=8% Similarity=0.267 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDE 634 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~e 634 (1151)
+++.+++..+.....++..+.++..
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~ 30 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRR 30 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcc
Confidence 5677788888888888888888763
No 436
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=46.65 E-value=2.4e+02 Score=26.02 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS 643 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~ 643 (1151)
..++.|....++|.++++..+.....++....++.
T Consensus 39 ~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs 73 (89)
T PF13747_consen 39 EEIQRLDADRSRLAQELDQAEARANRLEEANREVS 73 (89)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455566666666666666655555554444433
No 437
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=46.45 E-value=1e+02 Score=37.40 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+.........+.+++++|++++..++++++..
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555666666777777777666666665
No 438
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=45.85 E-value=8e+02 Score=31.90 Aligned_cols=23 Identities=0% Similarity=0.049 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Q 001117 436 YLAKKAYKDMCFSAVCIQTGMRG 458 (1151)
Q Consensus 436 ~~~rk~y~~~r~a~i~iQs~~Rg 458 (1151)
+..|..+.+.+++...+++.+..
T Consensus 553 ~r~rq~~~~~r~~ld~leaa~e~ 575 (984)
T COG4717 553 SRIRQHWQQLRKALDQLEAAYEA 575 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556655555554433
No 439
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=45.72 E-value=99 Score=29.69 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++....+++..|+..+.+|-++...|+-||+.||.
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555666666666666654
No 440
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.48 E-value=2.5e+02 Score=31.17 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 659 KIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 659 ~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
++..|+.+++.|+....+|=+...=++
T Consensus 108 ~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 108 TISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555544
No 441
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=45.23 E-value=34 Score=35.29 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 660 IVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 660 ~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
...|+.++++|++++.+|+.|+
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777776
No 442
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=45.11 E-value=2.6e+02 Score=26.17 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKIVQLKTAMHRLEEKV 674 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l 674 (1151)
++..++..+..|..-.++|+.++
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444443
No 443
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.03 E-value=93 Score=25.89 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKF 639 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1151)
++++.+..+++..+..++++++++.+.+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 444
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=44.99 E-value=3.2e+02 Score=26.99 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDM 677 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~L 677 (1151)
+|++++.+.+..|.++
T Consensus 104 ~L~k~I~~~e~iI~~f 119 (126)
T PF09403_consen 104 KLDKEIAEQEQIIDNF 119 (126)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 445
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=44.80 E-value=2.8e+02 Score=26.35 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 001117 612 EELTSENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ 633 (1151)
..|......++..+..+...+.
T Consensus 75 ~~l~~q~~~l~~~l~~l~~~~~ 96 (127)
T smart00502 75 KVLEQQLESLTQKQEKLSHAIN 96 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333
No 446
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.34 E-value=1.9e+02 Score=35.90 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+.++......++.+++++++++.+++.++..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 140 IERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444445555556666666666666655543
No 447
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=44.22 E-value=7.4e+02 Score=31.02 Aligned_cols=262 Identities=12% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHhhhhHHHh
Q 001117 426 CLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLAR------LHYMKLKKAAIT 499 (1151)
Q Consensus 426 Ai~IQ~~~R~~~~rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r------~~~~~~~~a~i~ 499 (1151)
++.|=-+.=++..||++.+.-.....--..+.......++...+.-.-+-..+..+..|... ..+-..-.....
T Consensus 7 vi~l~~~~~~~~~rk~~~k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ 86 (560)
T PF06160_consen 7 VIVLIIYIIGYIYRKRYYKEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFE 86 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------HHHHHH
Q 001117 500 TQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT--------------QENAKL 565 (1151)
Q Consensus 500 iQ~~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~~--------------~e~~~L 565 (1151)
+.....++...+--..+......+..+......+...+.++...-+..+..-.++...-+ .-...|
T Consensus 87 ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~L 166 (560)
T PF06160_consen 87 AEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEEL 166 (560)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhccccccccch----------------------------------
Q 001117 566 QSALQEMQLQFKESKEKLM-----KEIEVAKKEAEKVPVVQEVPVI---------------------------------- 606 (1151)
Q Consensus 566 ~~~l~~le~~l~~~~~~l~-----~e~~~~~~l~ee~~~~~e~~~~---------------------------------- 606 (1151)
.+.+..++....+...... +..+-+..+.+++..+.+....
T Consensus 167 e~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~ 246 (560)
T PF06160_consen 167 EKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLE 246 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCC
Q ss_pred ----------------------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 607 ----------------------DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLK 664 (1151)
Q Consensus 607 ----------------------e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~ 664 (1151)
..-.+......+..+...++.+-..++..-.....+++....+...+....+....+.
T Consensus 247 ~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~ 326 (560)
T PF06160_consen 247 HLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELK 326 (560)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHHHh
Q 001117 665 TAMHRLEE----------KVSDMETENQILRQQ 687 (1151)
Q Consensus 665 ~~~~~Le~----------~l~~Le~E~~~lrqq 687 (1151)
.++..+.. ....++.+++.+..+
T Consensus 327 ~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~ 359 (560)
T PF06160_consen 327 EELERVSQSYTLNHNELEIVRELEKQLKELEKR 359 (560)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
No 448
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=44.13 E-value=4.7e+02 Score=28.69 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1151)
......|..+...++.++..++..+.
T Consensus 149 ~a~~~~l~ae~~~l~~~~~~le~el~ 174 (240)
T PF12795_consen 149 EAQRWLLQAELAALEAQIEMLEQELL 174 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554443
No 449
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=43.78 E-value=3.4e+02 Score=31.05 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 634 ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
-+++.+++++.....+...+.+....+..+......|+.++..|++++
T Consensus 116 ~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 116 LLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333334444444444444
No 450
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.73 E-value=1.4e+02 Score=34.04 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=11.3
Q ss_pred HHHHHHHHHhccCCCeeeEec
Q 001117 250 QQLQQLLETLSSSEPHYIRCV 270 (1151)
Q Consensus 250 ~sl~~L~~~l~~t~~hfirCI 270 (1151)
.-+..||..+....|-|-+-+
T Consensus 126 ~Liq~l~a~f~~~pP~ys~~~ 146 (365)
T KOG2391|consen 126 GLIQELIAAFSEDPPVYSRSL 146 (365)
T ss_pred HHHHHHHHHhcCCCccccCCC
Confidence 344555555666666555433
No 451
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=42.84 E-value=4.8e+02 Score=28.47 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 516 LKMAARETGALQAAKNKLEKQVEELTWR 543 (1151)
Q Consensus 516 lk~~a~~~~~L~~~~~~LE~kv~el~~r 543 (1151)
|.++...+..+......++.++.+++.+
T Consensus 40 l~~ar~~~A~~~a~~k~~e~~~~~~~~~ 67 (225)
T COG1842 40 LAKARQALAQAIARQKQLERKLEEAQAR 67 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555554433
No 452
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=42.84 E-value=7.8e+02 Score=30.89 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q 001117 968 LVQKIFTQTFSY 979 (1151)
Q Consensus 968 l~~Q~f~Qlf~~ 979 (1151)
.-.+|.-|||-|
T Consensus 652 ~d~alm~ql~pl 663 (811)
T KOG4364|consen 652 CDRALMVQLFPL 663 (811)
T ss_pred HHHHHHHHHhhh
Confidence 334444455443
No 453
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=42.70 E-value=6.6e+02 Score=30.04 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 646 ~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
-.++..++.+++......++.-...+.+..++..++++|+.
T Consensus 429 agEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~ 469 (488)
T PF06548_consen 429 AGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKR 469 (488)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555544
No 454
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.56 E-value=3.7e+02 Score=29.00 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++..-..|...|++.+.+.+.++....+-..+.+.........+...+.++..+...++.++++...+++=+...++
T Consensus 52 ~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 52 ALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 455
>PHA02414 hypothetical protein
Probab=42.39 E-value=2.3e+02 Score=26.21 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 658 SKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 658 ~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
++...+--++.+|++.++.|.+-+
T Consensus 57 EKqshi~yQi~~Lee~i~aL~~~n 80 (111)
T PHA02414 57 EKQSHIYYQIERLEEKISALAESN 80 (111)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcc
Confidence 334445555666666666555544
No 456
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=42.26 E-value=2.4e+02 Score=24.81 Aligned_cols=40 Identities=13% Similarity=0.329 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1151)
Q Consensus 638 ~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~L 677 (1151)
...++.........+...+...+..|...+..|.+++++|
T Consensus 29 sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 29 SYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333344455555666666666666666654
No 457
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=42.02 E-value=7.4e+02 Score=30.36 Aligned_cols=7 Identities=43% Similarity=0.942 Sum_probs=2.7
Q ss_pred ccceeee
Q 001117 352 GKTKVFL 358 (1151)
Q Consensus 352 G~TkVFl 358 (1151)
|+|.|++
T Consensus 152 G~tqI~I 158 (489)
T PF05262_consen 152 GKTQIVI 158 (489)
T ss_pred CCceEEE
Confidence 3333333
No 458
>PRK11519 tyrosine kinase; Provisional
Probab=41.57 E-value=9.1e+02 Score=31.28 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKV 674 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l 674 (1151)
.+++++.+-.++-.
T Consensus 373 ~~L~Re~~~~~~lY 386 (719)
T PRK11519 373 VRLTRDVESGQQVY 386 (719)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444333333
No 459
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.46 E-value=6.7e+02 Score=29.69 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001117 533 LEKQVEELTWRLQLEK 548 (1151)
Q Consensus 533 LE~kv~el~~rl~~e~ 548 (1151)
.|..+.+++.+|+.++
T Consensus 257 aEqsl~dlQk~Lekar 272 (575)
T KOG4403|consen 257 AEQSLEDLQKRLEKAR 272 (575)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555666666666443
No 460
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=41.18 E-value=3e+02 Score=25.64 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001117 565 LQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1151)
Q Consensus 565 L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~ 644 (1151)
|+.++..++...++..............+. +++..|..++.+-.+.+-++....+.+..+...+..
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE--------------~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILE--------------QKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 645 ISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1151)
Q Consensus 645 ~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l 674 (1151)
...+-..-+..+...=..+...+..++.++
T Consensus 67 ~~~Ks~~~i~~L~~~E~~~~~~l~~~Eke~ 96 (96)
T PF08647_consen 67 QLSKSSELIEQLKETEKEFVRKLKNLEKEL 96 (96)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhccC
No 461
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=41.07 E-value=6.8e+02 Score=29.67 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001117 613 ELTSENEKLKTLVSSLEKKIDETEKKFE 640 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~ 640 (1151)
.|-.|...|+..+..|+.+|.+.+..+.
T Consensus 348 ~L~~EV~~l~~t~~~L~~kL~eA~~~l~ 375 (421)
T KOG2685|consen 348 RLVDEVHELDDTVAALKEKLDEAEDSLK 375 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 462
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=40.99 E-value=2.6e+02 Score=31.53 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
-..++.++.++.+|.++-.-|+.|+...+-
T Consensus 58 aNavrdYqrq~~elneEkrtLeRELARaKV 87 (351)
T PF07058_consen 58 ANAVRDYQRQVQELNEEKRTLERELARAKV 87 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445577888999998888888888877665
No 463
>PRK11546 zraP zinc resistance protein; Provisional
Probab=40.85 E-value=1.5e+02 Score=29.86 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
..++++..+.+|+.+|+.++.++.-+....
T Consensus 86 pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~ 115 (143)
T PRK11546 86 PDSSKINAVAKEMENLRQSLDELRVKRDIA 115 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888776655443
No 464
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=40.74 E-value=7.7e+02 Score=30.25 Aligned_cols=58 Identities=31% Similarity=0.430 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 524 GALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMK 585 (1151)
Q Consensus 524 ~~L~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~ 585 (1151)
.+|.-.+++|=++|.+|+-.-+ -++-+++ +.++-..+|++++.+++.++.+++.+...
T Consensus 318 NALNiVKNDLIakVDeL~~E~~---vLrgEle-a~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 318 NALNIVKNDLIAKVDELTCEKD---VLRGELE-AVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred hHHHHHHHHHHHHHHhhccHHH---HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667778888877753222 1223333 33344557888888888888877765543
No 465
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=40.25 E-value=4.7e+02 Score=27.56 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 510 RRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDME-------EAKTQENAKLQSALQEMQLQFKESKEK 582 (1151)
Q Consensus 510 rr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~rl~~e~~~~~~le-------~~~~~e~~~L~~~l~~le~~l~~~~~~ 582 (1151)
++-..+|+.-...+..|......+.+++..+..-.++-...+..-. .....++..|+.++.+|...+++.+..
T Consensus 13 k~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~leEhq~a 92 (181)
T PF05769_consen 13 KRLVERLKDHDNAADSLLSQAEALNKQIESMRQYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQSLEEHQSA 92 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555556666666666666555311111011100000 011233456666667776666666665
Q ss_pred HHHHHHHHHHH
Q 001117 583 LMKEIEVAKKE 593 (1151)
Q Consensus 583 l~~e~~~~~~l 593 (1151)
++--..+++..
T Consensus 93 lelIM~KyReq 103 (181)
T PF05769_consen 93 LELIMSKYREQ 103 (181)
T ss_pred HHHHHHHHHHH
Confidence 55445555443
No 466
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=40.18 E-value=4.8e+02 Score=27.66 Aligned_cols=107 Identities=8% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001117 566 QSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKI 645 (1151)
Q Consensus 566 ~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~ 645 (1151)
+.-++.|+.++.+.+.-+.++...+.... .-++.........+..+..|...+......+...+..
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~aq--------------~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~ 131 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQAQ--------------ANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQV 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 646 ~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.......+.+....+..-+..++.|..++.....+.+..++
T Consensus 132 a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 132 AEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=40.05 E-value=5.2e+02 Score=28.05 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEK 673 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~ 673 (1151)
+..+..|+.++.+++.+
T Consensus 195 e~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 195 EVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444333
No 468
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=40.01 E-value=4.6e+02 Score=27.44 Aligned_cols=156 Identities=21% Similarity=0.174 Sum_probs=0.0
Q ss_pred hHHHhhhhhhhHHHHHHHH--HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001117 495 KAAITTQCAWRGKVARREL--RKLKMAARETGALQAA-----------KNKLEKQVEELTWRLQLEKRMRVDMEEAKTQE 561 (1151)
Q Consensus 495 ~a~i~iQ~~~R~~~arr~l--~~lk~~a~~~~~L~~~-----------~~~LE~kv~el~~rl~~e~~~~~~le~~~~~e 561 (1151)
.|...+|.-+|+.-.-|-. ..++.-..++.+.+.. ..++.++..++..+|. +....
T Consensus 4 sALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~-----------aAEtR 72 (178)
T PF14073_consen 4 SALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLS-----------AAETR 72 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHH-----------HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001117 562 NAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1151)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e 641 (1151)
+.-|+++++-|..-+..++.+.....++-..+..+-..-........++++.|+.|..+|...-.-.+.++..+|.++.+
T Consensus 73 CslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~e 152 (178)
T PF14073_consen 73 CSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQE 152 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001117 642 TSKISEERLKQALEAESKIV 661 (1151)
Q Consensus 642 ~~~~~~~l~~~l~~~~~~~~ 661 (1151)
-+....-+..+...++....
T Consensus 153 EehqRKlvQdkAaqLQt~lE 172 (178)
T PF14073_consen 153 EEHQRKLVQDKAAQLQTGLE 172 (178)
T ss_pred HHHHHHHHHHHHHHHHhhHH
No 469
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=39.78 E-value=5.7e+02 Score=28.45 Aligned_cols=50 Identities=16% Similarity=0.277 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 632 l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
+.+...++.++.....+......++......-+..+.+++.+..++++..
T Consensus 187 L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~ 236 (264)
T PF06008_consen 187 LNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQ 236 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333443333333444444444444444443
No 470
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=39.70 E-value=51 Score=41.12 Aligned_cols=144 Identities=21% Similarity=0.079 Sum_probs=0.0
Q ss_pred chhHHHHHHHHhhhccchhhhchhhhhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001117 375 GRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQT 454 (1151)
Q Consensus 375 ~~aa~~IQ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~i~iQs 454 (1151)
..+-..||+.++.|+.++.-+.-+-.++.+|+.|+|+.-+.+.....-.+--..||.+|+.-.-.+....-...+...|-
T Consensus 528 ~~~Q~~~~k~~~~f~~~~~~R~~~I~i~~~~a~~~~~~w~~~~~~~~~~K~~~~iq~~~~D~~~~n~iS~~~aN~~~~~~ 607 (1023)
T KOG0165|consen 528 NRAQSVIQKAVRHFLLRKKQRKFTIGIIKIQALWRGYSWRKKNDCTKIKKIRLSLQVVNRDIREENKLSKRTANALHYLL 607 (1023)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcccccHHHHHHHHHHHHHhhcccccCcccccceeeec
Q ss_pred HHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhHHHHHHHHHHHHH
Q 001117 455 GMRGMAARNELRFRRQ--TRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKM 518 (1151)
Q Consensus 455 ~~Rg~~aR~~~~~~r~--~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arr~l~~lk~ 518 (1151)
.....-+--+-...-+ ..++..+|.+.++.-+++.++....+...+|+.+|.+..+.....+-+
T Consensus 608 ~~~R~~~~~e~~~~l~~~~~~~~~~~~n~~~~~a~sie~~~~~~~~~Lr~~~~~~~i~~~Iqv~~~ 673 (1023)
T KOG0165|consen 608 TYKRLSAILEALKHLEVVTRLSPLCCENMAQSGAISIEKIFVLIRSCLRSIPCMEVIRYAIQVLLN 673 (1023)
T ss_pred cccchhhhhhhHHHhhHHHHhhHHHhhhhhhhchhhHHHHHHHHHhhhccchHHHHHHHHHHHHHh
No 471
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.24 E-value=3.1e+02 Score=28.57 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
...+...+..+.+|+..++....+...+....+......+..++...++..++..|+..++.++.++...+
T Consensus 73 s~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 73 SEAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 472
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=39.02 E-value=3.6e+02 Score=33.73 Aligned_cols=163 Identities=9% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHH
Q 001117 890 QQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLV 969 (1151)
Q Consensus 890 q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~ 969 (1151)
..+..+.......|++.+-..|.|.+.......--... .++.|+..+..++.-++. ++.+.+.
T Consensus 360 ~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft~~W~~~~----------------~~~~I~~Ti~dY~~d~~~-~l~~~~~ 422 (566)
T PF06046_consen 360 DGFDDLAKECCQYLLEEIFNDLKPHFKKLFTKKWYSGE----------------AVDTICATIEDYLQDFQH-YLRPPYF 422 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTHHHHCTTTSGGGCTS-----------------HHHHHHHHHHHHHHHHCC-CS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcCcCcCcc----------------hHHHHHHHHHHHHHHHHH-hccccHH
Q ss_pred HHHHHHHHHhHHHHHhHhhhcccCcc-----CCcchhHHHhchHHHHHHHhhcccccccccHHHhHHHHHHHhHHhhccc
Q 001117 970 QKIFTQTFSYINVQLFNSLLLRRECC-----TFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQK 1044 (1151)
Q Consensus 970 ~Q~f~Qlf~~ina~lfN~Ll~r~~~c-----s~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk 1044 (1151)
..++.++...+=..=+..|+.++--| .-.-+.+|+-....|.+-+.+.+ ........+..|...+.+|-+..+
T Consensus 423 ~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~--~~~~~~~~~~~l~~l~~ll~~~d~ 500 (566)
T PF06046_consen 423 QELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLG--SKSEVKSSFDVLEDLLELLRLEDP 500 (566)
T ss_dssp HHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHH-HS-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHhcCCH
Q ss_pred ccCCHH-HHHhccCcCCCHHHHHHHHhc
Q 001117 1045 YRISYD-EITNDLCPILSVQQLYRICTL 1071 (1151)
Q Consensus 1045 ~~~~~~-~i~~~~c~~L~~~Qi~kil~~ 1071 (1151)
+...++ ..+...+|-++...|..||..
T Consensus 501 ~~i~l~~~~l~~~ypD~~~~~v~alL~~ 528 (566)
T PF06046_consen 501 EMIKLEVSSLLQKYPDISEEHVEALLAL 528 (566)
T ss_dssp CCHHHHHHHHHCC-TT--SHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHh
No 473
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=38.91 E-value=1.9e+02 Score=36.82 Aligned_cols=84 Identities=10% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER-------LKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l-------~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E 680 (1151)
..+...+.++..+++.+++.+++.++++|.++.+++.....- ..++.++.++...++.+++++.++-.+|+++
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~ 627 (638)
T PRK10636 548 KRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQ 627 (638)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhcccc
Q 001117 681 NQILRQQSLLS 691 (1151)
Q Consensus 681 ~~~lrqq~l~~ 691 (1151)
++++...+-+.
T Consensus 628 ~~~~~~~~~~~ 638 (638)
T PRK10636 628 LEQMLLEGQSN 638 (638)
T ss_pred HHHHhhhhccC
No 474
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=38.73 E-value=10 Score=45.75 Aligned_cols=122 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 510 RRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEK----RMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMK 585 (1151)
Q Consensus 510 rr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~rl~~e~----~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~ 585 (1151)
++..+..++.++|+..|++......++++|.+.+|...+ +.-.+-.....+-.+.|+..-++-+.++......+..
T Consensus 365 ~~~~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~ 444 (495)
T PF12004_consen 365 RESMKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMA 444 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHhhccccccccch----hHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 586 EIEVAKKEAEKVPVVQEVPVI----DHAVVEELTSENEKLKTLVSSLEKK 631 (1151)
Q Consensus 586 e~~~~~~l~ee~~~~~e~~~~----e~~~~~~L~~e~~kLe~~l~~l~~~ 631 (1151)
.++++++...++...-+.... .+..+..|...+..|-..+..|+++
T Consensus 445 vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~r 494 (495)
T PF12004_consen 445 VEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKER 494 (495)
T ss_dssp --------------------------------------------------
T ss_pred hhhhhhhhHHHHhcccccchHHHHHhhhhccccccccccccccccccccC
No 475
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=38.58 E-value=3.2e+02 Score=25.19 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 613 ELTSENEKLKTLVSSLEKKID----------ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~----------ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
.|+.-...|+..++.|+..+. +++.++..+......+..++...+.....|+.-..++..++...-+.+.
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=38.57 E-value=5.2e+02 Score=27.65 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 515 KLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEA 594 (1151)
Q Consensus 515 ~lk~~a~~~~~L~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ 594 (1151)
.|+++..++..--.....|...+.+....+. ........+...+..-..+++..+.+++.......-+.
T Consensus 18 QLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~-----------~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLr 86 (202)
T PF06818_consen 18 QLKESQAEVNQKDSEIVSLRAQLRELRAELR-----------NKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLR 86 (202)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhh
Q ss_pred hhccccccccchhHHHHHHH-----------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001117 595 EKVPVVQEVPVIDHAVVEEL-----------------------TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK 651 (1151)
Q Consensus 595 ee~~~~~e~~~~e~~~~~~L-----------------------~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~ 651 (1151)
+.+..++.......+..... ......|..+++.|+..+.......++.....+.-..
T Consensus 87 ekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~ 166 (202)
T PF06818_consen 87 EKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERR 166 (202)
T ss_pred hhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKI----VQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 652 ~l~~~~~~~----~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
.=.+..+++ .+|+...-.+=.+...|+.++.
T Consensus 167 ~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 167 TWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 477
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=38.50 E-value=1e+03 Score=30.91 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHH
Q 001117 495 KAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMR-----VDMEEAKTQENAKLQSAL 569 (1151)
Q Consensus 495 ~a~i~iQ~~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~rl~~e~~~~-----~~le~~~~~e~~~L~~~l 569 (1151)
.++..+......+.....-.+...+.+..+-|.++..+++.++.+.+.+++.=++.+ ..-....-.+..+++.++
T Consensus 241 ~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql 320 (726)
T PRK09841 241 LITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQL 320 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001117 570 QEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER 649 (1151)
Q Consensus 570 ~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l 649 (1151)
.+++.+..++...... ..-.+..+..+.+.|++++..++.++.++- +.+.+..++
T Consensus 321 ~~l~~~~~~l~~~~~~---------------------~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p----~~e~~~~~L 375 (726)
T PRK09841 321 NELTFREAEISQLYKK---------------------DHPTYRALLEKRQTLEQERKRLNKRVSAMP----STQQEVLRL 375 (726)
T ss_pred HHHHHHHHHHHHHhcc---------------------cCchHHHHHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 650 LKQALEAESKIVQLKTAMHRLE 671 (1151)
Q Consensus 650 ~~~l~~~~~~~~~l~~~~~~Le 671 (1151)
..+.+..+.....+-+..++++
T Consensus 376 ~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 376 SRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 478
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.49 E-value=56 Score=41.75 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001117 471 TRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAA 520 (1151)
Q Consensus 471 ~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arr~l~~lk~~a 520 (1151)
+..+..+-+..-....|..-++..++++.+|+.|||+.+|+..+.+..++
T Consensus 6 ~er~~~l~r~~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~ 55 (1001)
T KOG0942|consen 6 NERDNLLRRAAEERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFREE 55 (1001)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=38.40 E-value=5e+02 Score=27.36 Aligned_cols=139 Identities=20% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhHHHHHH------HHHHHHHHHHHHHHH
Q 001117 514 RKLKMAARETGALQAAKNKLEKQVEELTWRL-------------QLEKRMRVDMEEAKT------QENAKLQSALQEMQL 574 (1151)
Q Consensus 514 ~~lk~~a~~~~~L~~~~~~LE~kv~el~~rl-------------~~e~~~~~~le~~~~------~e~~~L~~~l~~le~ 574 (1151)
..-+.-+.-+..|+.+..+..++..+++.++ ..+..-..+++.... +-++.|...+.-|..
T Consensus 9 e~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLRe 88 (182)
T PF15035_consen 9 EEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLRE 88 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 575 QFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQAL 654 (1151)
Q Consensus 575 ~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~ 654 (1151)
+++.+.... +.|..++.+|...+..+..++..-+..... +......-+.
T Consensus 89 QLEq~~~~N----------------------------~~L~~dl~klt~~~~~l~~eL~~ke~~~~~---ee~~~~~y~~ 137 (182)
T PF15035_consen 89 QLEQARKAN----------------------------EALQEDLQKLTQDWERLRDELEQKEAEWRE---EEENFNQYLS 137 (182)
T ss_pred HHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
.....+..|-.++..++....+++..-+.
T Consensus 138 ~eh~rll~LWr~v~~lRr~f~elr~~Ter 166 (182)
T PF15035_consen 138 SEHSRLLSLWREVVALRRQFAELRTATER 166 (182)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHh
No 480
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=38.35 E-value=3.9e+02 Score=26.29 Aligned_cols=67 Identities=24% Similarity=0.283 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 503 AWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESK 580 (1151)
Q Consensus 503 ~~R~~~arr~l~~lk~~a~~~~~L~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~ 580 (1151)
.+|-+.-|+-+++.-=++.=..+-..++.+||++..+|...++ ....|++.+..++..++...+.+.
T Consensus 49 VvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~-----------~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 49 VVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVE-----------KLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
No 481
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.31 E-value=2.2e+02 Score=29.13 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAM 667 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~ 667 (1151)
...+..++.+|+.++..|+.+++.+++++.++.+........-+.+-.-+....+.+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=38.23 E-value=5.1e+02 Score=27.44 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001117 558 KTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1151)
Q Consensus 558 ~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1151)
|..-++.|+.++.+.+.-+.+....++.......... ........+...|+..+...+..+...+.
T Consensus 65 Kq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~--------------~aa~~A~~q~~~L~~~l~~a~~nl~~a~~ 130 (188)
T PF05335_consen 65 KQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQ--------------RAAQQAQQQLETLKAALKAAQANLANAEQ 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1151)
Q Consensus 638 ~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~ 679 (1151)
-......+..+-..-++..+..+..|.+.+...+..++..+.
T Consensus 131 ~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 131 VAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=38.16 E-value=97 Score=26.69 Aligned_cols=59 Identities=24% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 627 SLEKKIDETEKKFEETSKISEERLKQALEA-------ESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 627 ~l~~~l~ele~~~~e~~~~~~~l~~~l~~~-------~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
++...+..+++++..+++....+..++... .+-+..-...+.+++.++..+++.+..|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 484
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.56 E-value=1.4e+02 Score=32.40 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001117 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTA-MHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~-~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+|++++..|++.|.+-...+-+.++.+.++..+ ++-+.+++..-++ ++.|+.++.++-.++..|+.
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 485
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=37.43 E-value=4e+02 Score=25.99 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE----------------RLKQALEAESKIVQLKTAMHRLEEK 673 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~----------------l~~~l~~~~~~~~~l~~~~~~Le~~ 673 (1151)
+...+..-+..++.++...+.+++.+++...+.+-.-++ +..-...+++.-..+++++..|+.+
T Consensus 24 ~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~ 103 (131)
T KOG1760|consen 24 EFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESE 103 (131)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 001117 674 VSDMETENQILRQ 686 (1151)
Q Consensus 674 l~~Le~E~~~lrq 686 (1151)
+.....++..|+.
T Consensus 104 ~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 104 LESISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHHHH
No 486
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=37.28 E-value=3.4e+02 Score=30.75 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHH
Q 001117 535 KQVEELTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVV 611 (1151)
Q Consensus 535 ~kv~el~~rl~~e~~~~~~le~~~~---~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~e~~~~ 611 (1151)
.+|.|++.+....--.+.++..++. -++.-|+..+++++.++.....+.
T Consensus 119 skv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~---------------------------- 170 (405)
T KOG2010|consen 119 SKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYREN---------------------------- 170 (405)
T ss_pred hhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE 648 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~ 648 (1151)
.++++|...++..++.|..+..+++..+...+..+++
T Consensus 171 eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 171 EEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=37.22 E-value=3.2e+02 Score=24.85 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~ 679 (1151)
+..+.+..+++...++.++++++.+.++..++-..-.++...+....+.++.+-+.+.++-+.+.++.+
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~ 89 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELNS 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
No 488
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=37.16 E-value=4.8e+02 Score=28.31 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 607 e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++.......+-.-..+..-+.-+.+.+++|....++..+.+.+..+-+.++.....|-.+..+|...++.+.+++.++++
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Q ss_pred h
Q 001117 687 Q 687 (1151)
Q Consensus 687 q 687 (1151)
+
T Consensus 147 ~ 147 (292)
T KOG4005|consen 147 Q 147 (292)
T ss_pred H
No 489
>PF03338 Pox_J1: Poxvirus J1 protein; InterPro: IPR005006 This is a family of proteins expressed by members of the Poxviridae.
Probab=37.12 E-value=45 Score=32.99 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhccCcccccccccchhhccCCC--CCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCC
Q 001117 206 DYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS--KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLL 276 (1151)
Q Consensus 206 d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~--~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~ 276 (1151)
+++++++-.++.-+...-++.||...+.....+. -...-.+-|-.++..|+..+.-..|-.++||-||...
T Consensus 63 eplSe~~ral~~f~d~~~lr~lfnr~p~~~~~~~V~v~~Gyl~DFV~s~~rL~ke~~~~~p~~~~YIdPr~~~ 135 (145)
T PF03338_consen 63 EPLSEEFRALFEFRDMKELRKLFNRIPINVSDGRVQVNKGYLSDFVISLIRLKKELGFDLPEPTTYIDPRDDI 135 (145)
T ss_pred cchhHHHHHHhhccccHHHHHHhccCCCCCCCCceEeccccHHHHHHHHHHHHHhcCCCCCCCceeeCCccch
No 490
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=36.92 E-value=32 Score=40.09 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHH
Q 001117 424 ASCLRIQRDLRMYLAKKAYKDMCFSAV 450 (1151)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~~~r~a~i 450 (1151)
+||+.||+|+|+|.+|...++-....+
T Consensus 18 kaAilIQkWYRr~~ARle~rrr~twqI 44 (631)
T KOG0377|consen 18 KAAILIQKWYRRYEARLEARRRCTWQI 44 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
No 491
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=36.87 E-value=9.4e+02 Score=30.13 Aligned_cols=150 Identities=21% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 001117 523 TGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQ-EMQLQFKESKEKLMKEIEVAKKEAEKVPVVQ 601 (1151)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~-~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~ 601 (1151)
+.+.......|.+++.+++...+ .+....++.......+++..++. .++....+.......+.+......
T Consensus 253 i~~a~~~i~~L~~~l~~l~~~~~--~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l------- 323 (582)
T PF09731_consen 253 IAHAKERIDALQKELAELKEEEE--EELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREEL------- 323 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 602 EVPVIDHAVVEELTSENEKLKTLVSSLEKKI---DETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1151)
Q Consensus 602 e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l---~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le 678 (1151)
.....+.|..+...-++.+.+-.+.. ...+...+-...-...+...-..-..++..+...++.|+..+....
T Consensus 324 -----~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~ 398 (582)
T PF09731_consen 324 -----EEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARS 398 (582)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 001117 679 TENQILRQ 686 (1151)
Q Consensus 679 ~E~~~lrq 686 (1151)
.....-++
T Consensus 399 ~~~~~~~~ 406 (582)
T PF09731_consen 399 EAEDENRR 406 (582)
T ss_pred HHHHHHHH
No 492
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=36.37 E-value=1.3e+03 Score=31.65 Aligned_cols=219 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001117 447 FSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGAL 526 (1151)
Q Consensus 447 ~a~i~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arr~l~~lk~~a~~~~~L 526 (1151)
.+...++.-.+++..-...........-...+...|.--.-..+...... ....+...+..+...+.+...+
T Consensus 819 ~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~--------~~~~~~~~l~~~~qle~~~~~l 890 (1294)
T KOG0962|consen 819 RTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKE--------EKQKIERSLARLQQLEEDIEEL 890 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccch
Q 001117 527 QAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI 606 (1151)
Q Consensus 527 ~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~ 606 (1151)
++....+-.++.++..+.. -+..+..+...+.++++.+....+...+...+++......+.........
T Consensus 891 ~e~~~~~~s~~~e~~~~~~-----------~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~ 959 (1294)
T KOG0962|consen 891 SEEITRLDSKVKELLERIQ-----------PLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNEC 959 (1294)
T ss_pred HHHHHHHHHHHHhhHhhhc-----------chhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 001117 607 ---------DHAVVEELTSENEKLKTLVSSLEKKID--ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE---- 671 (1151)
Q Consensus 607 ---------e~~~~~~L~~e~~kLe~~l~~l~~~l~--ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le---- 671 (1151)
..+.+..+...+..+...+......+. ....++.+-.-.+..+..++.+++.++..+..++-...
T Consensus 960 ~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~ 1039 (1294)
T KOG0962|consen 960 FEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSV 1039 (1294)
T ss_pred HHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred -HHHHHHHHHHHHH
Q 001117 672 -EKVSDMETENQIL 684 (1151)
Q Consensus 672 -~~l~~Le~E~~~l 684 (1151)
++...|+++.+.+
T Consensus 1040 ~ee~~~L~~~~~~l 1053 (1294)
T KOG0962|consen 1040 KEERVKLEEEREKL 1053 (1294)
T ss_pred HHHHHHHHHHHHHh
No 493
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.20 E-value=2.3e+02 Score=34.37 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
+.++..-++....++.+++.+-.++..++++.....+++.+.+...+.++.+|+.+++..+.+.+++.+.+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
No 494
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=35.80 E-value=3.3e+02 Score=24.55 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
.|..-.+.++.+++.+-......+....+.+.........+.....++-+|+..-..++.+- |+|+..|+.+
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~e 72 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
No 495
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=35.76 E-value=2.2e+02 Score=34.22 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKI----SEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~----~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~L 677 (1151)
+.+-.+..+..++..++++|+.+....-+++....+. ..++..+..++.+++..+++++.++++++..+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.72 E-value=55 Score=33.79 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 537 VEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKL 583 (1151)
Q Consensus 537 v~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l 583 (1151)
+++++.++...-+++.-||.+. +|.+.|+.+++.|+.++.+++.++
T Consensus 2 LeD~EsklN~AIERnalLE~EL-dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.52 E-value=2.1e+02 Score=27.50 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 626 SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1151)
Q Consensus 626 ~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E 680 (1151)
.++-..+.+++..+..+-.+..++...+.++.++...|+-+...|++.+.+++..
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~ 58 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEAE 58 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 498
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=35.27 E-value=2.3e+02 Score=29.79 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 628 LEKKIDETEKKFEETSKISEERLKQ----ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 628 l~~~l~ele~~~~e~~~~~~~l~~~----l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+....+++-.++...+.++..+... +.+...++..+-.+|..|++-.++|++||++|+
T Consensus 14 l~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELR 75 (195)
T PF10226_consen 14 LRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELR 75 (195)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=35.26 E-value=1.5e+02 Score=33.34 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
...|..|+..|-=+++-|+..|++.+..+.+.-.+.++..+.++-....+.-|+-+.++|++.|..-++=+++
T Consensus 135 naQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 135 NAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=35.24 E-value=4.2e+02 Score=25.61 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001117 568 ALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1151)
Q Consensus 568 ~l~~le~~l~~~~~~l~~e~~~~~~l~ee~~~~~e~~~~e~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~ 647 (1151)
++-+-+.++..++..+........... ..+...-..|+..-..++..+....+=+.+.+....
T Consensus 1 ~li~kkre~~~~~~~l~~kr~e~~~~~-----------------~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~ 63 (126)
T PF13863_consen 1 ELIEKKREMFLVQLALDTKREEIERRE-----------------EQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRE 63 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 648 ~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
......+...........++..|..++..++.++..+...
T Consensus 64 rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 64 RAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!