Query 001117
Match_columns 1151
No_of_seqs 560 out of 2979
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:55:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 100.0 9E-135 3E-139 1300.6 61.1 572 1-574 365-974 (1080)
2 1i84_S Smooth muscle myosin he 100.0 1E-110 4E-115 1103.5 40.0 417 1-417 391-837 (1184)
3 1kk8_A Myosin heavy chain, str 100.0 7E-108 2E-112 1018.9 33.8 416 1-417 388-824 (837)
4 1w7j_A Myosin VA; motor protei 100.0 1E-105 4E-110 994.6 34.9 399 1-401 365-794 (795)
5 4anj_A Unconventional myosin-V 100.0 1E-104 4E-109 1005.9 31.3 427 1-447 380-829 (1052)
6 2ycu_A Non muscle myosin 2C, a 100.0 3E-102 1E-106 992.3 30.2 434 1-434 360-823 (995)
7 1g8x_A Myosin II heavy chain f 100.0 2E-100 7E-105 973.2 45.5 419 1-436 383-808 (1010)
8 1lkx_A Myosin IE heavy chain; 100.0 1E-99 3E-104 929.6 26.9 373 1-374 310-696 (697)
9 1w9i_A Myosin II heavy chain; 100.0 1.4E-99 5E-104 931.6 27.8 377 1-379 383-767 (770)
10 4db1_A Myosin-7; S1DC, cardiac 100.0 9E-100 3E-104 936.7 24.9 374 1-375 389-782 (783)
11 2v26_A Myosin VI; calmodulin-b 100.0 8E-99 3E-103 933.6 30.7 386 1-389 376-784 (784)
12 2f6h_X Myosin-2, type V myosin 100.0 9.5E-62 3.2E-66 566.7 30.0 359 735-1140 6-403 (419)
13 3mmi_A Myosin-4; globular tail 100.0 2.3E-54 8E-59 484.3 23.5 311 744-1112 28-351 (386)
14 2dfs_A Myosin-5A; myosin-V, in 99.9 3.1E-21 1.1E-25 248.5 24.9 124 392-519 762-889 (1080)
15 1i84_S Smooth muscle myosin he 99.2 5E-11 1.7E-15 157.5 12.8 39 424-462 793-834 (1184)
16 2ix7_C Myosin-5A; contractIle 99.0 5.6E-11 1.9E-15 98.8 1.4 57 372-428 2-58 (58)
17 2ix7_C Myosin-5A; contractIle 98.9 2.8E-09 9.5E-14 88.5 6.7 53 423-475 5-57 (58)
18 1n2d_C IQ2 and IQ3 motifs from 98.8 1.6E-09 5.5E-14 86.2 3.1 46 397-442 2-47 (48)
19 1n2d_C IQ2 and IQ3 motifs from 98.6 1.1E-07 3.7E-12 75.6 7.0 46 445-490 2-47 (48)
20 1wdc_A Scallop myosin; calcium 98.2 5.1E-07 1.7E-11 76.3 2.9 47 370-416 1-50 (64)
21 2bl0_A Major plasmodial myosin 98.0 1.6E-06 5.5E-11 73.0 2.5 44 373-416 2-48 (63)
22 2v71_A Nuclear distribution pr 97.5 0.048 1.7E-06 55.3 24.9 60 611-670 90-149 (189)
23 1wdc_A Scallop myosin; calcium 97.3 8.8E-05 3E-09 62.5 2.3 47 397-443 5-52 (64)
24 2bl0_A Major plasmodial myosin 97.3 7.3E-05 2.5E-09 62.8 1.7 45 397-441 3-48 (63)
25 2v71_A Nuclear distribution pr 97.0 0.093 3.2E-06 53.2 21.9 27 612-638 98-124 (189)
26 3na7_A HP0958; flagellar bioge 97.0 0.11 3.8E-06 56.3 24.0 49 610-658 91-139 (256)
27 1kk8_A Myosin heavy chain, str 96.8 0.00037 1.3E-08 87.6 2.2 41 424-464 780-823 (837)
28 3vkg_A Dynein heavy chain, cyt 96.6 0.11 3.9E-06 73.6 25.1 29 512-540 1925-1953(3245)
29 3o0z_A RHO-associated protein 96.6 0.3 1E-05 48.3 20.7 18 530-547 8-25 (168)
30 3o0z_A RHO-associated protein 96.3 0.098 3.4E-06 51.7 15.3 26 609-634 55-80 (168)
31 3vkg_A Dynein heavy chain, cyt 95.9 0.73 2.5E-05 65.6 26.7 65 620-684 2032-2103(3245)
32 3oja_B Anopheles plasmodium-re 95.6 0.18 6.3E-06 61.5 17.8 75 612-686 505-579 (597)
33 3na7_A HP0958; flagellar bioge 95.6 0.45 1.5E-05 51.4 18.8 40 611-650 99-138 (256)
34 2fxo_A Myosin heavy chain, car 95.4 1.3 4.6E-05 42.3 19.0 33 652-684 91-123 (129)
35 2fxo_A Myosin heavy chain, car 95.4 1.4 5E-05 42.1 19.3 39 609-647 69-107 (129)
36 2v66_B Nuclear distribution pr 95.3 1.4 4.8E-05 40.6 17.7 66 610-675 36-101 (111)
37 3gn4_A Myosin-VI; unconvention 94.9 0.69 2.4E-05 44.8 15.2 57 432-496 14-70 (148)
38 3oja_B Anopheles plasmodium-re 94.8 0.2 6.7E-06 61.3 14.4 65 617-681 517-581 (597)
39 3hnw_A Uncharacterized protein 94.2 0.34 1.2E-05 46.9 11.4 69 615-683 67-135 (138)
40 2ocy_A RAB guanine nucleotide 94.0 3.6 0.00012 40.2 18.0 68 612-686 75-143 (154)
41 3u1c_A Tropomyosin alpha-1 cha 93.9 2 6.9E-05 39.2 15.3 63 617-679 38-100 (101)
42 3gn4_A Myosin-VI; unconvention 93.4 0.13 4.3E-06 49.9 6.6 55 383-445 13-67 (148)
43 2kxw_B Sodium channel protein 93.1 0.033 1.1E-06 37.7 1.4 20 421-440 4-23 (27)
44 3u59_A Tropomyosin beta chain; 93.0 2.8 9.6E-05 38.2 14.8 64 615-678 36-99 (101)
45 2l53_B CAM, voltage-gated sodi 92.6 0.054 1.9E-06 37.8 2.0 21 421-441 4-24 (31)
46 4gkw_A Spindle assembly abnorm 92.5 6.5 0.00022 36.4 17.2 29 609-637 46-74 (167)
47 3bas_A Myosin heavy chain, str 92.5 1.6 5.6E-05 38.8 12.2 74 608-681 13-86 (89)
48 3u1c_A Tropomyosin alpha-1 cha 91.8 7 0.00024 35.6 15.8 54 612-672 47-100 (101)
49 2ocy_A RAB guanine nucleotide 91.8 6.2 0.00021 38.6 16.1 74 614-687 56-137 (154)
50 3ol1_A Vimentin; structural ge 91.1 7.1 0.00024 36.7 15.5 14 662-675 87-100 (119)
51 3oja_A Leucine-rich immune mol 90.7 3.1 0.00011 49.2 16.0 26 612-637 445-470 (487)
52 2l53_B CAM, voltage-gated sodi 90.4 0.24 8.3E-06 34.6 3.4 22 469-490 4-25 (31)
53 2kxw_B Sodium channel protein 90.2 0.18 6.1E-06 34.2 2.5 20 469-488 4-23 (27)
54 2i1j_A Moesin; FERM, coiled-co 90.2 0.48 1.7E-05 57.3 8.3 19 565-583 340-358 (575)
55 1ic2_A Tropomyosin alpha chain 89.8 4.8 0.00016 35.0 12.2 69 617-685 7-75 (81)
56 3hnw_A Uncharacterized protein 89.5 2.8 9.7E-05 40.5 11.5 55 621-675 80-134 (138)
57 2oqq_A Transcription factor HY 89.4 0.88 3E-05 33.6 5.8 34 653-686 5-38 (42)
58 3ol1_A Vimentin; structural ge 89.4 5.8 0.0002 37.3 13.3 75 612-686 30-104 (119)
59 3swk_A Vimentin; cytoskeleton, 89.1 4.5 0.00015 35.7 11.5 76 610-685 8-83 (86)
60 3u59_A Tropomyosin beta chain; 88.3 15 0.0005 33.4 15.3 53 612-671 47-99 (101)
61 3a7p_A Autophagy protein 16; c 88.2 5.2 0.00018 38.7 12.0 36 651-686 96-131 (152)
62 1x79_B RAB GTPase binding effe 87.5 8.6 0.00029 35.4 12.5 28 658-685 77-104 (112)
63 2eqb_B RAB guanine nucleotide 87.2 14 0.00049 33.0 13.3 8 571-578 9-16 (97)
64 2a2f_X Exocyst complex compone 87.0 5.7 0.00019 44.2 13.6 100 940-1042 216-319 (325)
65 3mq7_A Bone marrow stromal ant 86.9 11 0.00039 34.4 12.7 33 653-685 73-105 (121)
66 2eqb_B RAB guanine nucleotide 85.9 19 0.00064 32.2 13.6 21 612-632 43-63 (97)
67 2v66_B Nuclear distribution pr 85.9 21 0.00073 32.8 17.2 68 615-682 34-101 (111)
68 2w6a_A ARF GTPase-activating p 84.4 5.4 0.00019 31.8 8.1 45 642-686 18-62 (63)
69 3q8t_A Beclin-1; autophagy, AT 84.1 23 0.0008 31.7 15.5 44 612-655 28-71 (96)
70 1ic2_A Tropomyosin alpha chain 83.6 14 0.00046 32.1 11.5 36 624-659 21-56 (81)
71 3bas_A Myosin heavy chain, str 83.0 15 0.00051 32.5 11.8 73 612-684 10-82 (89)
72 2e7s_A RAB guanine nucleotide 83.0 2.7 9.1E-05 40.0 7.1 20 613-632 64-83 (135)
73 3cvf_A Homer-3, homer protein 83.0 5.4 0.00018 34.4 8.3 27 609-635 13-39 (79)
74 3swk_A Vimentin; cytoskeleton, 82.5 13 0.00044 32.7 11.0 64 614-677 19-82 (86)
75 4h22_A Leucine-rich repeat fli 82.0 14 0.00049 33.2 11.0 64 611-674 18-81 (103)
76 3ghg_A Fibrinogen alpha chain; 81.8 24 0.00082 40.8 15.5 22 661-682 134-155 (562)
77 3cve_A Homer protein homolog 1 81.2 17 0.0006 30.6 10.6 28 609-636 7-34 (72)
78 2w83_C C-JUN-amino-terminal ki 81.2 15 0.00052 31.0 10.1 29 654-682 47-75 (77)
79 3ghg_A Fibrinogen alpha chain; 80.8 12 0.0004 43.2 12.6 19 562-580 59-77 (562)
80 2ycu_A Non muscle myosin 2C, a 80.7 0.23 7.9E-06 63.9 -1.4 21 472-492 788-808 (995)
81 4anj_A Unconventional myosin-V 80.4 1.6 5.4E-05 56.2 6.1 41 423-464 775-815 (1052)
82 2i1j_A Moesin; FERM, coiled-co 79.7 4 0.00014 49.3 9.1 16 530-545 330-345 (575)
83 1wt6_A Myotonin-protein kinase 79.3 14 0.00047 31.7 9.4 30 657-686 44-73 (81)
84 2b9c_A Striated-muscle alpha t 79.2 10 0.00034 37.0 10.0 55 628-682 57-111 (147)
85 3cvf_A Homer-3, homer protein 78.7 20 0.00068 30.9 10.4 59 629-687 12-70 (79)
86 2b9c_A Striated-muscle alpha t 78.3 9.5 0.00033 37.2 9.6 70 609-685 52-121 (147)
87 3q8t_A Beclin-1; autophagy, AT 77.8 39 0.0013 30.3 13.2 34 614-647 9-42 (96)
88 3cve_A Homer protein homolog 1 77.6 22 0.00075 30.0 10.1 58 630-687 7-64 (72)
89 3mq9_A Bone marrow stromal ant 77.6 32 0.0011 40.2 16.0 30 656-685 441-470 (471)
90 2e7s_A RAB guanine nucleotide 77.4 21 0.00071 34.0 11.1 19 533-551 44-62 (135)
91 3a7p_A Autophagy protein 16; c 76.8 31 0.0011 33.3 12.3 60 611-670 70-129 (152)
92 1fxk_A Prefoldin; archaeal pro 76.0 29 0.001 31.4 11.9 30 657-686 71-100 (107)
93 3iv1_A Tumor susceptibility ge 76.0 29 0.00098 29.8 10.5 60 619-678 14-73 (78)
94 3c9i_A Tail needle protein GP2 75.7 52 0.0018 33.0 13.8 76 617-692 78-153 (242)
95 1go4_E MAD1 (mitotic arrest de 75.7 8 0.00027 34.9 7.4 30 610-639 13-42 (100)
96 3s4r_A Vimentin; alpha-helix, 75.0 40 0.0014 30.0 11.9 69 609-686 23-91 (93)
97 3tnu_B Keratin, type II cytosk 74.3 37 0.0013 32.2 12.5 63 611-676 38-100 (129)
98 3fhn_A Protein transport prote 73.9 30 0.001 42.2 14.4 97 942-1043 562-658 (706)
99 1x79_B RAB GTPase binding effe 73.6 49 0.0017 30.4 12.3 8 549-556 27-34 (112)
100 2b5u_A Colicin E3; high resolu 73.4 1.1E+02 0.0037 35.2 17.4 19 566-584 348-366 (551)
101 2zqm_A Prefoldin beta subunit 72.9 37 0.0013 31.3 12.0 30 657-686 76-105 (117)
102 3s4r_A Vimentin; alpha-helix, 72.9 38 0.0013 30.2 11.3 11 625-635 25-35 (93)
103 1l8d_A DNA double-strand break 72.3 31 0.0011 31.6 11.2 31 656-686 69-99 (112)
104 2w83_C C-JUN-amino-terminal ki 71.9 28 0.00095 29.5 9.2 34 648-681 34-67 (77)
105 1t2k_D Cyclic-AMP-dependent tr 71.1 25 0.00086 28.6 9.0 36 652-687 23-58 (61)
106 1wt6_A Myotonin-protein kinase 70.6 45 0.0015 28.6 10.3 39 642-680 36-74 (81)
107 1deq_A Fibrinogen (alpha chain 70.4 58 0.002 36.2 14.1 18 563-580 63-80 (390)
108 3mq7_A Bone marrow stromal ant 70.3 66 0.0023 29.5 12.5 32 657-688 70-101 (121)
109 3s9g_A Protein hexim1; cyclin 69.6 20 0.00067 31.8 8.2 22 665-686 65-86 (104)
110 2zqm_A Prefoldin beta subunit 68.3 71 0.0024 29.3 12.8 38 648-685 74-111 (117)
111 3tnu_A Keratin, type I cytoske 67.5 41 0.0014 31.9 11.1 21 656-676 82-102 (131)
112 3qh9_A Liprin-beta-2; coiled-c 67.2 52 0.0018 28.2 10.0 26 652-677 48-73 (81)
113 3nmd_A CGMP dependent protein 66.5 17 0.00059 30.6 6.9 29 657-685 39-67 (72)
114 3s9g_A Protein hexim1; cyclin 65.9 56 0.0019 29.0 10.2 32 656-687 63-94 (104)
115 3mq9_A Bone marrow stromal ant 65.8 1.1E+02 0.0037 35.5 16.9 18 564-581 401-418 (471)
116 4gkw_A Spindle assembly abnorm 65.4 87 0.003 29.1 19.1 23 560-582 60-82 (167)
117 2fji_1 Exocyst complex compone 64.5 1.1E+02 0.0037 34.8 16.1 123 944-1070 219-349 (399)
118 3ni0_A Bone marrow stromal ant 63.7 78 0.0027 27.9 11.2 23 663-685 65-87 (99)
119 1m1j_B Fibrinogen beta chain; 63.4 1.8E+02 0.0061 33.6 17.2 30 657-686 167-196 (464)
120 3a7o_A Autophagy protein 16; c 62.6 59 0.002 26.9 9.1 16 670-685 51-66 (75)
121 1m1j_B Fibrinogen beta chain; 62.0 2.3E+02 0.0079 32.7 18.3 14 811-826 293-306 (464)
122 1gu4_A CAAT/enhancer binding p 61.8 40 0.0014 29.0 8.6 35 652-686 37-71 (78)
123 1w7j_A Myosin VA; motor protei 61.3 6 0.0002 49.5 4.9 29 469-497 766-794 (795)
124 2wt7_A Proto-oncogene protein 60.3 55 0.0019 26.8 9.0 34 653-686 25-58 (63)
125 1l8d_A DNA double-strand break 60.0 87 0.003 28.5 11.6 33 650-682 70-102 (112)
126 3nmd_A CGMP dependent protein 59.9 26 0.00089 29.5 6.8 14 662-675 51-64 (72)
127 1m1j_A Fibrinogen alpha subuni 59.5 2E+02 0.0068 32.8 15.9 28 658-685 132-159 (491)
128 1hjb_A Ccaat/enhancer binding 59.5 45 0.0015 29.3 8.7 36 653-688 38-73 (87)
129 2k48_A Nucleoprotein; viral pr 58.9 64 0.0022 29.0 9.5 32 609-640 35-66 (107)
130 3qh9_A Liprin-beta-2; coiled-c 58.6 86 0.0029 26.9 9.8 14 616-629 26-39 (81)
131 1fxk_A Prefoldin; archaeal pro 58.5 1E+02 0.0035 27.6 12.5 29 653-681 74-102 (107)
132 3m9b_A Proteasome-associated A 58.3 7.5 0.00026 41.0 4.2 41 646-686 56-96 (251)
133 1ci6_A Transcription factor AT 57.5 40 0.0014 27.6 7.7 34 653-686 25-58 (63)
134 3k29_A Putative uncharacterize 57.2 1.5E+02 0.0051 29.1 21.3 23 618-640 87-109 (169)
135 3iox_A AGI/II, PA; alpha helix 57.2 2.2E+02 0.0077 32.8 16.2 28 659-686 81-108 (497)
136 1deq_A Fibrinogen (alpha chain 57.0 2E+02 0.0069 32.0 15.3 15 531-545 63-77 (390)
137 1fxk_C Protein (prefoldin); ar 56.9 1.3E+02 0.0044 28.3 12.8 39 649-687 93-131 (133)
138 1gk4_A Vimentin; intermediate 56.0 1E+02 0.0035 26.8 12.2 23 523-545 3-25 (84)
139 1x8y_A Lamin A/C; structural p 55.6 1E+02 0.0034 26.9 10.4 47 523-583 5-51 (86)
140 1gd2_E Transcription factor PA 55.6 24 0.00083 29.7 6.1 35 650-684 35-69 (70)
141 1go4_E MAD1 (mitotic arrest de 54.8 48 0.0016 29.8 8.2 14 661-674 78-91 (100)
142 4dck_A Sodium channel protein 54.3 5.4 0.00018 39.7 2.2 24 421-444 128-151 (168)
143 2xdj_A Uncharacterized protein 54.0 70 0.0024 27.8 8.9 33 654-686 23-55 (83)
144 2k48_A Nucleoprotein; viral pr 53.5 1.2E+02 0.0042 27.2 10.4 59 522-580 36-102 (107)
145 3i00_A HIP-I, huntingtin-inter 53.2 1.4E+02 0.0048 27.8 11.5 67 610-686 16-82 (120)
146 1jnm_A Proto-oncogene C-JUN; B 53.2 36 0.0012 27.7 6.8 35 652-686 23-57 (62)
147 1m1j_C Fibrinogen gamma chain; 52.2 1.8E+02 0.006 33.2 14.6 28 659-686 106-133 (409)
148 1m1j_C Fibrinogen gamma chain; 49.8 2.5E+02 0.0086 31.9 15.4 14 811-826 223-236 (409)
149 4dck_A Sodium channel protein 49.8 15 0.0005 36.6 4.5 24 469-492 128-151 (168)
150 3efg_A Protein SLYX homolog; x 49.2 44 0.0015 28.7 6.9 20 662-681 39-58 (78)
151 3qne_A Seryl-tRNA synthetase, 48.4 42 0.0014 39.3 8.8 72 609-684 33-104 (485)
152 1wle_A Seryl-tRNA synthetase; 48.0 65 0.0022 37.9 10.5 76 609-684 70-149 (501)
153 4h22_A Leucine-rich repeat fli 47.5 1.6E+02 0.0055 26.5 11.5 70 610-679 10-79 (103)
154 3tnu_A Keratin, type I cytoske 47.0 1.9E+02 0.0065 27.2 13.8 21 524-544 55-75 (131)
155 2v4h_A NF-kappa-B essential mo 46.8 1.7E+02 0.0058 26.6 13.0 19 663-681 88-106 (110)
156 3tnu_B Keratin, type II cytosk 46.1 1.9E+02 0.0066 27.1 14.3 22 562-583 77-98 (129)
157 2ke4_A CDC42-interacting prote 45.3 1.3E+02 0.0045 26.9 9.6 69 617-685 16-89 (98)
158 3n1e_A Vacuolar protein sortin 45.1 1E+02 0.0034 29.7 9.4 78 890-984 15-92 (141)
159 1dip_A Delta-sleep-inducing pe 43.8 15 0.00053 30.6 2.9 29 659-687 16-44 (78)
160 2dq0_A Seryl-tRNA synthetase; 43.5 45 0.0015 38.8 8.1 72 609-684 31-102 (455)
161 4etp_A Kinesin-like protein KA 43.3 50 0.0017 37.7 8.4 14 946-959 324-337 (403)
162 1ik9_A DNA repair protein XRCC 42.6 2.3E+02 0.008 29.1 12.5 26 611-636 141-166 (213)
163 3u06_A Protein claret segregat 42.6 29 0.00098 39.9 6.2 16 945-960 311-326 (412)
164 1d7m_A Cortexillin I; coiled-c 42.6 1.7E+02 0.0058 25.4 15.5 26 658-683 74-99 (101)
165 2ic6_A Nucleocapsid protein; h 42.2 1.6E+02 0.0056 25.1 9.2 29 611-639 7-35 (78)
166 1lq7_A Alpha3W; three helix bu 41.9 32 0.0011 26.6 4.3 8 634-641 29-36 (67)
167 3m91_A Proteasome-associated A 41.1 1.1E+02 0.0037 24.1 7.2 21 663-683 28-48 (51)
168 2lw1_A ABC transporter ATP-bin 39.6 1.2E+02 0.004 26.6 8.4 14 620-633 26-39 (89)
169 3hr0_A COG4; conserved oligome 39.5 3.7E+02 0.013 28.5 16.3 116 945-1071 127-249 (263)
170 1gmj_A ATPase inhibitor; coile 39.4 1.1E+02 0.0038 26.5 7.7 20 663-682 56-75 (84)
171 3he5_B Synzip2; heterodimeric 39.4 1.1E+02 0.0039 22.5 6.9 10 669-678 35-44 (52)
172 1uii_A Geminin; human, DNA rep 39.3 1E+02 0.0034 26.7 7.4 32 655-686 43-74 (83)
173 3mov_A Lamin-B1; LMNB1, B-type 38.7 1.4E+02 0.0047 26.7 8.6 24 522-545 13-36 (95)
174 3lss_A Seryl-tRNA synthetase; 38.4 1.3E+02 0.0043 35.2 10.8 34 609-642 37-70 (484)
175 1gd2_E Transcription factor PA 38.2 1.7E+02 0.0058 24.5 8.5 19 559-577 49-67 (70)
176 1deb_A APC protein, adenomatou 38.2 1.3E+02 0.0043 23.3 6.9 18 662-679 21-38 (54)
177 4fi5_A Nucleoprotein; structur 38.0 1.7E+02 0.0059 26.6 9.0 29 611-639 24-52 (113)
178 1wlq_A Geminin; coiled-coil; 2 37.9 91 0.0031 26.9 6.8 32 655-686 35-66 (83)
179 1hjb_A Ccaat/enhancer binding 37.6 1.6E+02 0.0054 25.8 8.6 37 648-684 40-76 (87)
180 2ic9_A Nucleocapsid protein; h 37.3 2.1E+02 0.0071 25.4 9.2 29 611-639 7-35 (96)
181 2xnx_M M protein, M1-BC1; cell 37.2 99 0.0034 29.6 7.7 25 662-686 84-108 (146)
182 4emc_A Monopolin complex subun 36.9 90 0.0031 31.2 7.8 27 610-636 21-47 (190)
183 1t2k_D Cyclic-AMP-dependent tr 36.8 1.7E+02 0.0057 23.6 9.1 32 648-679 26-57 (61)
184 1kd8_A GABH AIV, GCN4 acid bas 35.8 70 0.0024 22.9 4.8 26 608-633 7-32 (36)
185 3c9i_A Tail needle protein GP2 35.5 3.1E+02 0.011 27.6 11.2 61 622-682 90-150 (242)
186 1kd8_B GABH BLL, GCN4 acid bas 35.3 50 0.0017 23.6 4.0 19 665-683 8-26 (36)
187 3ghg_C Fibrinogen gamma chain; 35.0 4.8E+02 0.016 29.6 14.4 25 662-686 109-133 (411)
188 2oto_A M protein; helical coil 34.6 3.2E+02 0.011 26.4 18.7 11 564-574 54-64 (155)
189 1f5n_A Interferon-induced guan 34.5 3.9E+02 0.013 32.0 14.6 10 69-78 93-102 (592)
190 4fi5_A Nucleoprotein; structur 34.5 2.7E+02 0.0091 25.4 10.1 57 524-580 25-89 (113)
191 2yy0_A C-MYC-binding protein; 34.3 57 0.0019 25.8 4.8 30 609-638 19-48 (53)
192 2xdj_A Uncharacterized protein 33.9 2.3E+02 0.008 24.5 10.0 39 647-685 23-61 (83)
193 3htk_A Structural maintenance 33.7 1.8E+02 0.0061 23.1 8.9 20 655-674 37-56 (60)
194 2yy0_A C-MYC-binding protein; 33.5 64 0.0022 25.5 5.0 26 661-686 22-47 (53)
195 3iox_A AGI/II, PA; alpha helix 33.3 6.2E+02 0.021 29.2 17.1 22 655-676 84-105 (497)
196 1ik9_A DNA repair protein XRCC 32.9 2.9E+02 0.0099 28.4 11.3 53 263-317 16-68 (213)
197 2wq1_A General control protein 32.4 83 0.0028 22.1 4.6 24 662-685 4-27 (33)
198 3a2a_A Voltage-gated hydrogen 32.3 1.3E+02 0.0043 23.8 6.1 21 522-542 12-32 (58)
199 2z5i_A TM, general control pro 32.1 1E+02 0.0035 24.3 5.9 36 651-686 5-40 (52)
200 4etp_A Kinesin-like protein KA 32.1 96 0.0033 35.4 8.4 9 677-685 50-58 (403)
201 1jnm_A Proto-oncogene C-JUN; B 32.0 1.8E+02 0.006 23.6 7.7 6 533-538 27-32 (62)
202 3vmx_A Voltage-gated hydrogen 31.9 1.5E+02 0.0053 22.8 6.5 22 663-684 16-37 (48)
203 3ljm_A Coil Ser L9C; de novo d 31.9 77 0.0026 21.0 4.1 22 614-635 6-27 (31)
204 3etw_A Adhesin A; antiparallel 31.8 3.2E+02 0.011 25.4 15.1 16 661-676 85-100 (119)
205 2akf_A Coronin-1A; coiled coil 31.6 1E+02 0.0035 20.9 4.8 21 660-680 8-28 (32)
206 1gu4_A CAAT/enhancer binding p 31.5 2.2E+02 0.0077 24.3 8.4 30 649-678 41-70 (78)
207 3m48_A General control protein 31.0 75 0.0026 22.3 4.2 24 662-685 4-27 (33)
208 3lay_A Zinc resistance-associa 30.8 1.2E+02 0.0041 30.3 7.7 26 657-682 112-137 (175)
209 4emc_A Monopolin complex subun 30.7 2.7E+02 0.0091 27.9 10.0 11 790-800 170-180 (190)
210 1g8x_A Myosin II heavy chain f 30.4 1.4E+02 0.0046 38.5 10.1 56 392-447 757-816 (1010)
211 3vmx_A Voltage-gated hydrogen 29.8 1.9E+02 0.0066 22.3 7.2 26 645-670 12-37 (48)
212 2lw1_A ABC transporter ATP-bin 29.7 2.8E+02 0.0095 24.1 10.3 27 608-634 55-81 (89)
213 2zdi_C Prefoldin subunit alpha 29.6 3.1E+02 0.011 26.3 10.5 39 648-686 102-140 (151)
214 2oxj_A Hybrid alpha/beta pepti 29.6 91 0.0031 22.0 4.4 22 663-684 6-27 (34)
215 1gmj_A ATPase inhibitor; coile 29.6 1.9E+02 0.0064 25.1 7.5 23 656-678 56-78 (84)
216 2ke4_A CDC42-interacting prote 29.4 3.1E+02 0.011 24.5 11.4 29 608-636 61-89 (98)
217 2no2_A HIP-I, huntingtin-inter 29.2 3.3E+02 0.011 24.8 16.1 25 520-544 14-38 (107)
218 1kd8_B GABH BLL, GCN4 acid bas 29.1 90 0.0031 22.3 4.4 25 608-632 7-31 (36)
219 3m9b_A Proteasome-associated A 28.6 40 0.0014 35.5 3.9 37 651-687 54-90 (251)
220 1f5n_A Interferon-induced guan 28.5 6.7E+02 0.023 29.9 15.2 13 193-205 94-106 (592)
221 4fm3_A Uncharacterized hypothe 28.0 3.3E+02 0.011 24.4 9.2 30 652-681 65-94 (98)
222 2ic6_A Nucleocapsid protein; h 27.7 2.9E+02 0.0098 23.6 10.2 58 523-580 7-72 (78)
223 2zxx_A Geminin; coiled-coil, c 27.4 1.4E+02 0.0048 25.6 6.3 24 660-683 36-59 (79)
224 1lwu_C Fibrinogen gamma chain; 27.4 1.2E+02 0.0043 33.3 7.8 29 658-686 26-54 (323)
225 2ic9_A Nucleocapsid protein; h 27.3 3.3E+02 0.011 24.2 10.1 59 523-581 7-73 (96)
226 1t6f_A Geminin; coiled-coil, c 27.2 1.7E+02 0.0059 20.9 5.6 24 662-685 11-34 (37)
227 3mov_A Lamin-B1; LMNB1, B-type 26.9 2.9E+02 0.0098 24.6 8.7 19 612-630 15-33 (95)
228 3c3g_A Alpha/beta peptide with 26.8 1.2E+02 0.004 21.3 4.6 8 674-681 16-23 (33)
229 3ra3_B P2F; coiled coil domain 26.6 55 0.0019 21.2 2.7 23 662-684 4-26 (28)
230 1ses_A Seryl-tRNA synthetase; 26.5 1.5E+02 0.0051 34.0 8.8 70 609-684 28-97 (421)
231 2yko_A LINE-1 ORF1P; RNA-bindi 26.5 1.3E+02 0.0043 31.4 7.2 6 752-757 126-131 (233)
232 3c3f_A Alpha/beta peptide with 26.4 1.2E+02 0.0041 21.4 4.6 19 665-683 8-26 (34)
233 3trt_A Vimentin; cytoskeleton, 26.2 2.9E+02 0.0099 23.1 11.4 29 657-685 48-76 (77)
234 3m48_A General control protein 26.1 80 0.0027 22.2 3.7 15 663-677 12-26 (33)
235 1lwu_C Fibrinogen gamma chain; 25.7 1.6E+02 0.0053 32.5 8.2 8 811-818 145-152 (323)
236 2akf_A Coronin-1A; coiled coil 25.4 81 0.0028 21.4 3.5 21 615-635 5-25 (32)
237 1uo4_A General control protein 25.3 1.2E+02 0.004 21.5 4.4 24 662-685 5-28 (34)
238 3c3g_A Alpha/beta peptide with 25.1 1E+02 0.0036 21.6 4.1 24 608-631 6-29 (33)
239 1deb_A APC protein, adenomatou 25.1 2.4E+02 0.0081 21.8 7.0 7 615-621 16-22 (54)
240 2oxj_A Hybrid alpha/beta pepti 24.8 1E+02 0.0036 21.7 4.1 23 608-630 7-29 (34)
241 4fla_A Regulation of nuclear P 24.6 4.8E+02 0.017 25.2 13.4 26 563-588 71-96 (152)
242 2wvr_A Geminin; DNA replicatio 24.2 1.8E+02 0.006 29.4 7.4 18 667-684 124-141 (209)
243 3c3f_A Alpha/beta peptide with 24.2 1.1E+02 0.0038 21.5 4.1 24 608-631 7-30 (34)
244 3a7o_A Autophagy protein 16; c 24.0 3.1E+02 0.011 22.7 8.9 24 656-679 51-74 (75)
245 4dzn_A Coiled-coil peptide CC- 23.9 1.7E+02 0.0058 19.7 4.7 26 661-686 5-30 (33)
246 3dvk_B Voltage-dependent R-typ 23.1 28 0.00095 22.6 0.9 15 425-439 8-22 (23)
247 1ci6_A Transcription factor AT 23.0 3.1E+02 0.01 22.3 8.6 23 655-677 34-56 (63)
248 2hy6_A General control protein 23.0 1.3E+02 0.0044 21.3 4.2 25 608-632 7-31 (34)
249 3he5_A Synzip1; heterodimeric 22.5 2.3E+02 0.0078 20.7 6.8 10 614-623 8-17 (49)
250 1m1j_A Fibrinogen alpha subuni 22.5 9E+02 0.031 27.6 16.3 25 651-675 132-156 (491)
251 1dh3_A Transcription factor CR 22.5 2.9E+02 0.0099 21.8 7.2 19 666-684 30-48 (55)
252 3uux_B Mitochondrial division 22.4 6.4E+02 0.022 26.2 11.4 75 612-686 152-226 (242)
253 1ses_A Seryl-tRNA synthetase; 22.3 2.1E+02 0.0071 32.8 8.8 29 659-687 65-93 (421)
254 3ra3_A P1C; coiled coil domain 22.2 67 0.0023 20.8 2.5 21 613-633 4-24 (28)
255 1lq7_A Alpha3W; three helix bu 22.2 1.4E+02 0.0047 23.1 4.8 11 671-681 54-64 (67)
256 2l5g_B Putative uncharacterize 22.1 1.6E+02 0.0054 22.0 4.8 28 610-637 10-37 (42)
257 2dgc_A Protein (GCN4); basic d 22.0 2.7E+02 0.0091 22.7 6.9 25 662-686 34-58 (63)
258 3u06_A Protein claret segregat 21.4 1.8E+02 0.0061 33.2 8.0 14 1003-1016 332-345 (412)
259 1a92_A Delta antigen; leucine 21.2 2.1E+02 0.0071 22.0 5.4 23 659-681 15-37 (50)
260 1uo4_A General control protein 21.0 1.2E+02 0.0043 21.4 3.9 24 608-631 7-30 (34)
261 2dgc_A Protein (GCN4); basic d 21.0 1.4E+02 0.0047 24.4 5.0 29 653-681 32-60 (63)
262 2dq3_A Seryl-tRNA synthetase; 20.6 47 0.0016 38.3 2.9 72 609-684 30-101 (425)
263 4dk0_A Putative MACA; alpha-ha 20.0 3.6E+02 0.012 29.7 10.2 35 653-687 117-151 (369)
264 2pms_C Pneumococcal surface pr 20.0 2.7E+02 0.0091 26.0 7.2 10 668-677 71-80 (125)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=8.7e-135 Score=1300.58 Aligned_cols=572 Identities=41% Similarity=0.692 Sum_probs=495.8
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
|||+++|.++||+|++.++||.|++|+++++|..+||||||+||++||+|||.+||.+|+++.....|||||||||||+|
T Consensus 365 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f 444 (1080)
T 2dfs_A 365 GVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETF 444 (1080)
T ss_dssp TCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCC
T ss_pred CCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCceEEeeccCCcccc
Confidence 79999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHHH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1151)
+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+|.||++|||||++| .|||+||||||++|+|||++|
T Consensus 445 ~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f 523 (1080)
T 2dfs_A 445 EINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTW 523 (1080)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHH
T ss_pred CcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCChHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 699999999999999999999
Q ss_pred HHHHHHHh-cCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhc-cCcccccccccchhh----
Q 001117 161 AQKLYQTF-KNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSAS-KCSFVSSLFLPLAEE---- 234 (1151)
Q Consensus 161 ~~kl~~~~-~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S-~~~~v~~lf~~~~~~---- 234 (1151)
++||+.+| ++|++|.+|+.+...|+|+||||+|+|+++||++||+|+++++++++|++| +++||+.||+.....
T Consensus 524 ~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~ 603 (1080)
T 2dfs_A 524 AQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 603 (1080)
T ss_dssp HHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTHHHHHBCCCCHHHHHHHHTCSSCSHHHHSCC---------
T ss_pred HHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhHHHhccccccHHHHHHHHcccccHHHHHHhcccccccccc
Confidence 99999998 999999999998899999999999999999999999999999999999999 999999999764210
Q ss_pred -----------------------ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhh
Q 001117 235 -----------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLR 291 (1151)
Q Consensus 235 -----------------------~~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr 291 (1151)
..+..+++||+++|+.||+.||++|++|+||||||||||+.+.|+.||+.+|++|||
T Consensus 604 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr 683 (1080)
T 2dfs_A 604 SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLR 683 (1080)
T ss_dssp ----------------------------CCCBHHHHHHHHHHHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhhHHHHh
Confidence 012235689999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHhcCCCCccChHHHHHHHhhhhhccCCCCccHHHHHHHHHhhcCC--CCcccccceeeeecccccchhhh
Q 001117 292 CGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDAR 369 (1151)
Q Consensus 292 ~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~--~~~~~G~TkVFlr~~~~~~Le~~ 369 (1151)
|+||||+|||+++|||+|++|.+|+.||++|+|...... |.+++|+.||..+++ ++|++|+||||||+|+++.||.+
T Consensus 684 ~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~-d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~ 762 (1080)
T 2dfs_A 684 ACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLS-DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKI 762 (1080)
T ss_dssp TTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCS-SHHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHH
T ss_pred hcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCC-ChHHHHHHHHHHhcCChhhheeccccchhccchhhHHHHH
Confidence 999999999999999999999999999999999765544 899999999999865 48999999999999999999999
Q ss_pred hhhccchhHHHHHHHHhhhccchhhhchhhhhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHHHHHHHHHhhhhHH
Q 001117 370 RTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSA 449 (1151)
Q Consensus 370 R~~~l~~aa~~IQ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~ 449 (1151)
|.+.+..+|+.||++||||++|++|.+++.|++.||++|||+++|+.+..+|+..||++||++||||.+|+.|.+++.++
T Consensus 763 R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aa 842 (1080)
T 2dfs_A 763 RADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDAT 842 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 450 VCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAA 529 (1151)
Q Consensus 450 i~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arr~l~~lk~~a~~~~~L~~~ 529 (1151)
+.||+.+||+.+|+.+..+++..+|+.||++||+|.+|+.|.+.+++++.+|+.||++++|+++..++.++++++++++.
T Consensus 843 i~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~~l~~~ 922 (1080)
T 2dfs_A 843 IALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKL 922 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHH
Q 001117 530 KNKLEKQVEELTWRLQLEKRMRVDMEEAKT-------QENAKLQSALQEMQL 574 (1151)
Q Consensus 530 ~~~LE~kv~el~~rl~~e~~~~~~le~~~~-------~e~~~L~~~l~~le~ 574 (1151)
+.+||+++.+|+++++++++.+.++.+... +|+++|++++++++.
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987766665555433 444444444444443
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=1.3e-110 Score=1103.50 Aligned_cols=417 Identities=37% Similarity=0.669 Sum_probs=386.4
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCcccccccccCCcc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIYGFES 79 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgvLDi~GFE~ 79 (1151)
|||+++|.++||+|++.+++|.|++++++++|..+||||||+||++||+|||.+||.+|++. .....|||||||||||+
T Consensus 391 g~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~ 470 (1184)
T 1i84_S 391 GINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEI 470 (1184)
T ss_dssp TSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCC
T ss_pred CCCHHHHHHHhcCcEEEeCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCC
Confidence 79999999999999999999999999999999999999999999999999999999999875 45678999999999999
Q ss_pred ccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcC--CcchhHhhHhhhcCCCCC
Q 001117 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKK--PGGIIALLDEACMFPRST 156 (1151)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldlie~~--~~Gil~lLdee~~~p~~t 156 (1151)
|+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+| .||++|||||+++ |.|||+||||||++|+||
T Consensus 471 f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~t 550 (1184)
T 1i84_S 471 FEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKAT 550 (1184)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCC
Confidence 9999999999999999999999999999999999999999999999 5999999999973 349999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCCC--CCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhh
Q 001117 157 HETFAQKLYQTFKNHKRFSKPKL--ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE 234 (1151)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~~--~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~ 234 (1151)
|.+|++||+.+|++|++|.+|+. +...|+|+||||+|+|+++||++||+|+++++++.+|+.|+++||+.||+.....
T Consensus 551 d~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~s~~~~~~~lf~~~~~~ 630 (1184)
T 1i84_S 551 DTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRI 630 (1184)
T ss_dssp HHHHHHHHHHHTSSCTTEEECSSCTTTCEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSCHHHHHHHSCCTTC
T ss_pred hHHHHHHHHHHhCCCCCccCCCCCCCCCcEEEECCCceEEeccCCchhhccCcccHHHHHHHHhCchHHHHHHhcccccc
Confidence 99999999999999999999986 4689999999999999999999999999999999999999999999999864310
Q ss_pred ------------------ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchh
Q 001117 235 ------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVM 296 (1151)
Q Consensus 235 ------------------~~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvl 296 (1151)
..++++++|||++|+.||+.||++|++|+||||||||||+.+.|+.||+.+|++||||+||+
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~phfvRCIkPN~~k~p~~fd~~~V~~QLr~~Gvl 710 (1184)
T 1i84_S 631 VGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVL 710 (1184)
T ss_dssp CCC---------------------CCCHHHHHHHHHHHHHHHHTTSEEEECCEECCCSSCCSSCCCHHHHHHHHHHTTHH
T ss_pred ccccccccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceeeeCCCCcCCCCcccHHHHHHHHhhcCch
Confidence 01223568999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCCccChHHHHHHHhhhhhccCCC-CccHHHHHHHHHhhcCCC--Ccccccceeeeecccccchhhhhhhc
Q 001117 297 EAIRISCAGYPTRKPFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEV 373 (1151)
Q Consensus 297 e~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~-~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R~~~ 373 (1151)
|+|||+++|||+|++|.+|+.||++|.|...+. ..|.+.+|..||..++++ .|++|+||||||+|+++.||.+|..+
T Consensus 711 E~iri~r~Gfp~R~~~~~F~~ry~~L~~~~~~~~~~d~k~~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~~r~~~ 790 (1184)
T 1i84_S 711 EGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLK 790 (1184)
T ss_dssp HHHHHHHHSCCEEEEHHHHHHHTTTTCTTTSCSSCCCHHHHHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHHHHHHH
T ss_pred HHHHhHhhcCcccccHHHHHHHHHHhccccCCcCCCCHHHHHHHHHHHcCCCccceeEcCeEEEEechHHHHHHHHHHHH
Confidence 999999999999999999999999999876543 468899999999998764 89999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhccchhhhchh---hhhHhhhhHhhhhcchhhc
Q 001117 374 LGRSASIIQRKVRSYLSRKNYIMLR---RSAIHIQAACRGQLARTVY 417 (1151)
Q Consensus 374 l~~aa~~IQ~~~R~~l~Rk~y~~~r---~a~i~IQ~~~Rg~lar~~~ 417 (1151)
+..+++.||++||||++|++|.+++ .|++.||++||+|++++.|
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999874 7889999999999987654
No 3
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=7e-108 Score=1018.86 Aligned_cols=416 Identities=40% Similarity=0.701 Sum_probs=377.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
|||+++|.++||+|++.+++|.++++++++||..+||||||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 388 gv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f 467 (837)
T 1kk8_A 388 GINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIF 467 (837)
T ss_dssp TSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHhcCcEEEcCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceEEEEecCCcccc
Confidence 79999999999999999999999999999999999999999999999999999999999976667899999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1151)
+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+| .||++||||||+ |.|||+||||||++|++||++
T Consensus 468 ~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~t 546 (837)
T 1kk8_A 468 DFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKS 546 (837)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHH
T ss_pred ccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHH
Confidence 999999999999999999999999999999999999999999999 699999999998 679999999999999999999
Q ss_pred HHHHHH-HHhcCCCCcCCCCCC------CCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccch
Q 001117 160 FAQKLY-QTFKNHKRFSKPKLA------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLA 232 (1151)
Q Consensus 160 ~~~kl~-~~~~~~~~~~~p~~~------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~ 232 (1151)
|++||+ +++++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+.||+...
T Consensus 547 f~~kl~~~~~~~~~~f~~p~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~ 626 (837)
T 1kk8_A 547 FQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPE 626 (837)
T ss_dssp HHHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHTCC--
T ss_pred HHHHHHHHhcCCCcCccCCCccccccccCCceEEeeccCcccccHHHHHHhccccccHHHHHHHHhchHHHHHHHhcccc
Confidence 999976 456899999999864 6899999999999999999999999999999999999999999999998643
Q ss_pred hh-----ccCC--CCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcC
Q 001117 233 EE-----SSKT--SKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAG 305 (1151)
Q Consensus 233 ~~-----~~~~--~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~G 305 (1151)
.. ..++ ++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+++|
T Consensus 627 ~~~g~~~~~k~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~G 706 (837)
T 1kk8_A 627 EPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKG 706 (837)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCC
T ss_pred cccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHccCCeeeeeeCCCccCCcccccchheeeeccccCccHHHHHHHHh
Confidence 21 1111 3568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccChHHHHHHHhhhhhccCCC-CccHHHHHHHHHhhcCCC--CcccccceeeeecccccchhhhhhhccchhHHHHH
Q 001117 306 YPTRKPFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQ 382 (1151)
Q Consensus 306 yp~r~~~~~F~~ry~~l~~~~~~~-~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R~~~l~~aa~~IQ 382 (1151)
||+|++|.+|+.||++|+|..++. ..|.+++|+.||..++++ +|++|+||||||+|+++.||.+|.+++..+++.||
T Consensus 707 fp~R~~f~eF~~RY~~L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ 786 (837)
T 1kk8_A 707 FPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQ 786 (837)
T ss_dssp SCEEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999986543 468999999999998875 89999999999999999999999999999999999
Q ss_pred HHHhhhccchhhhch---hhhhHhhhhHhhhhcchhhc
Q 001117 383 RKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTVY 417 (1151)
Q Consensus 383 ~~~R~~l~Rk~y~~~---r~a~i~IQ~~~Rg~lar~~~ 417 (1151)
++||||++|++|.++ |.|++.||++||||++|+.|
T Consensus 787 a~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 787 AHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 999999999999998 68899999999999986554
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1.1e-105 Score=994.57 Aligned_cols=399 Identities=45% Similarity=0.773 Sum_probs=375.2
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
|||+++|.++||+|++.+++|.++++++++||..+||||||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 365 gv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f 444 (795)
T 1w7j_A 365 GVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETF 444 (795)
T ss_dssp TCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccceEEeeccCccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987667899999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHHH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~ 160 (1151)
+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++||||||+| .|||+||||||++|++||++|
T Consensus 445 ~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f 523 (795)
T 1w7j_A 445 EINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTW 523 (795)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHH
T ss_pred CcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 699999999999999999999
Q ss_pred HHHHHHHh-cCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhcc-Ccccccccccchhh----
Q 001117 161 AQKLYQTF-KNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASK-CSFVSSLFLPLAEE---- 234 (1151)
Q Consensus 161 ~~kl~~~~-~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~-~~~v~~lf~~~~~~---- 234 (1151)
++||+.+| ++|++|.+|+.+...|+|+||||+|+|+++||++||+|+++++++.+|+.|+ ++||+.||+.....
T Consensus 524 ~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~ 603 (795)
T 1w7j_A 524 AQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 603 (795)
T ss_dssp HHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSSCSHHHHTTC---------
T ss_pred HHHHHHHhhccCCccccCCCCCCceEEEecceEEEEechhHHhhccccccHHHHHHHHhccccHHHHHHhcccccccccc
Confidence 99999998 9999999999988999999999999999999999999999999999999999 99999999764210
Q ss_pred -----------------------ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhh
Q 001117 235 -----------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLR 291 (1151)
Q Consensus 235 -----------------------~~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr 291 (1151)
..+..+++||+++|+.||+.||++|++|+||||||||||+.|.|+.||..+|++|||
T Consensus 604 ~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr 683 (795)
T 1w7j_A 604 SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLR 683 (795)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCTTCCTTCCCHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCcCChhhcCcccccchhh
Confidence 011235689999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHhcCCCCccChHHHHHHHhhhhhccCCCCccHHHHHHHHHhhcCC--CCcccccceeeeecccccchhhh
Q 001117 292 CGGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDAR 369 (1151)
Q Consensus 292 ~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~--~~~~~G~TkVFlr~~~~~~Le~~ 369 (1151)
|+||||+|||+++|||+|++|.+|+.||++|+|...... |.+++|+.||..+++ ++|++|+||||||+|+++.||.+
T Consensus 684 ~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~-d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~ 762 (795)
T 1w7j_A 684 ACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLS-DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKI 762 (795)
T ss_dssp HTTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSCGGGCCS-CHHHHHHHHHHHHCCCGGGEEECSSEEEECTTHHHHHHHH
T ss_pred hCChHHHHHHHHcCCCccccHHHHHHHHHHhCCcccCCC-CHHHHHHHHHHHhCCCccceEEcCceEEEchhHHHHHHHH
Confidence 999999999999999999999999999999999766554 899999999999865 48999999999999999999999
Q ss_pred hhhccchhHHHHHHHHhhhccchhhhchhhhh
Q 001117 370 RTEVLGRSASIIQRKVRSYLSRKNYIMLRRSA 401 (1151)
Q Consensus 370 R~~~l~~aa~~IQ~~~R~~l~Rk~y~~~r~a~ 401 (1151)
|.+++..+++.||++||||++|++|+++|.|+
T Consensus 763 r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 763 RADKLRAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998875
No 5
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1.1e-104 Score=1005.86 Aligned_cols=427 Identities=35% Similarity=0.575 Sum_probs=386.0
Q ss_pred CCCHHHHHHHHhhceEe-----ecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001117 1 MCDAKALEDSLCKREIV-----TRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~-----~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~ 75 (1151)
|||+++|.++||+|++. ++||.++++++++||..+||||||+||++||+|||++||.+|+.+ ....+|||||||
T Consensus 380 gv~~~~L~~aLt~r~~~~~~~~~~~e~i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~-~~~~~IGILDI~ 458 (1052)
T 4anj_A 380 GLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE-TSSYFIGVLDIA 458 (1052)
T ss_dssp TCCHHHHHHHHHEEC-------------CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS-CCSEEEEEEECC
T ss_pred CCCHHHHHHHHhhceeeecccccCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccceEEEEecC
Confidence 79999999999999885 579999999999999999999999999999999999999999875 456899999999
Q ss_pred CCccccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCC
Q 001117 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1151)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~ 155 (1151)
|||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++|||||+++|.|||+||||||++|++
T Consensus 459 GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~ 538 (1052)
T 4anj_A 459 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQP 538 (1052)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSC
T ss_pred CCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccc
Q 001117 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1151)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1151)
||++|++||++.|++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++++|++|+++||+
T Consensus 539 tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~~~~i~ 618 (1052)
T 4anj_A 539 SDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIR 618 (1052)
T ss_dssp CHHHHHHHHHHTTTTCTTEECGGGCSCSTTTTCCTTSEEEEEETTEEEEEECTTHHHHHBCCCCHHHHHHHHTCSCHHHH
T ss_pred cHHHHHHHHHHHhccCccccCCcccccccccccCCCCCeEEEcCCccEEEecCChhhhccccccHHHHHHHHhCCcHHHH
Confidence 9999999999999999999887643 357999999999999999999999999999999999999999999
Q ss_pred cccccchhhcc------CCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhH
Q 001117 226 SLFLPLAEESS------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAI 299 (1151)
Q Consensus 226 ~lf~~~~~~~~------~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i 299 (1151)
.||+....... ++.+++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|
T Consensus 619 ~Lf~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvLE~i 698 (1052)
T 4anj_A 619 ELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 698 (1052)
T ss_dssp HTTCC----------------CCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHHTHHHHH
T ss_pred HhhhccccccccccCCCCCCCCccHHHHHHHHHHHHHHHHcCcCCEEEEEECCCccCCCCcCCHHHHHHHHHHhhHHHHH
Confidence 99986532211 123568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHHhhhhhccCCCCccHHHHHHHHHhhcCCC--Ccccccceeeeecccccchhhhhhhccchh
Q 001117 300 RISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRS 377 (1151)
Q Consensus 300 ri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R~~~l~~a 377 (1151)
||+++|||+|++|.+|+.||++|+|.... ..|++++|+.||+.++++ +|++|+||||||+|+++.||.+|...+..+
T Consensus 699 rI~r~Gyp~R~~f~eF~~RY~~L~~~~~~-~~d~k~~~~~iL~~l~l~~~~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~ 777 (1052)
T 4anj_A 699 DLMQGGFPSRASFHELYNMYKKYMPDKLA-RLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHL 777 (1052)
T ss_dssp HHTTTCCCEEEEHHHHHHHHHTTSCSSGG-GSCHHHHHHHHHHHTSCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHH
T ss_pred HHHhcCCCCcCcHHHHHHHHHHhCccccc-CCCHHHHHHHHHHHcCcCcccEEecCCEEeeCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997654 368999999999999875 899999999999999999999999999999
Q ss_pred HHHHHHHHhhhccchhhhchhhhhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHHHHHHHHHhhhh
Q 001117 378 ASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1151)
Q Consensus 378 a~~IQ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~ 447 (1151)
++.||+ +|||++|++|++++.+++.||..+|++..|+ ++.|.|++.|.++++
T Consensus 778 ~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~-----------------~~~~~w~~l~~~v~p 829 (1052)
T 4anj_A 778 AELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRA-----------------EAVSKGEELFTGVVP 829 (1052)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHTTSSCEE
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HcchHHHHHHHhhhh
Confidence 988885 7999999999999999999999988876543 456666666666655
No 6
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=3e-102 Score=992.28 Aligned_cols=434 Identities=34% Similarity=0.611 Sum_probs=396.0
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CCcccccccccCCcc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN-SKSLIGVLDIYGFES 79 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-~~~~IgvLDi~GFE~ 79 (1151)
|||+++|.++||+|++.+++|.|++++++++|..+||||||+||++||+|||.+||.+|++... ...+||||||||||+
T Consensus 360 gv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~GFE~ 439 (995)
T 2ycu_A 360 GLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEI 439 (995)
T ss_dssp TCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCSEEEEEEECCCBCC
T ss_pred CCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEeccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999986554 678999999999999
Q ss_pred ccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhc--CCcchhHhhHhhhcCCCCC
Q 001117 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEK--KPGGIIALLDEACMFPRST 156 (1151)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldlie~--~~~Gil~lLdee~~~p~~t 156 (1151)
|+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+| .||++|||||++ +|.|||+||||||++|++|
T Consensus 440 f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~t 519 (995)
T 2ycu_A 440 FQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKAT 519 (995)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCC
T ss_pred cccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999 699999999998 4889999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCCCC--CCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhh
Q 001117 157 HETFAQKLYQTFKNHKRFSKPKLA--RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE 234 (1151)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~~~--~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~ 234 (1151)
|.+|++||+..|++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+.||+.....
T Consensus 520 D~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~v~~lf~~~~~~ 599 (995)
T 2ycu_A 520 DKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGI 599 (995)
T ss_dssp HHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHTSSCCSS
T ss_pred hHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCccccccchhhhccccccHHHHHHHHhCcHHHHHHHhhccccc
Confidence 999999999999999999999864 589999999999999999999999999999999999999999999999764310
Q ss_pred ----------------ccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhh
Q 001117 235 ----------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEA 298 (1151)
Q Consensus 235 ----------------~~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~ 298 (1151)
..++++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+
T Consensus 600 ~~~~~~~~~~~~~~g~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~ 679 (995)
T 2ycu_A 600 VGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEG 679 (995)
T ss_dssp CSCCC-------------CCCSSCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCTTTHHHHHHHHTHHHH
T ss_pred ccccccccccccccccCcCCCCCCchHHHHHHHHHHHHHHHHhcCcceeeeecCCccccccccCHHHHHHHhcccchHHH
Confidence 0112356899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccChHHHHHHHhhhhhccCCC-CccHHHHHHHHHhhcCCC--Ccccccceeeeecccccchhhhhhhccc
Q 001117 299 IRISCAGYPTRKPFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLG 375 (1151)
Q Consensus 299 iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~-~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R~~~l~ 375 (1151)
|||+++|||+|++|.+|+.||++|+|..++. ..|.+++|+.||..++++ +|++|+||||||+|+++.||.+|.+++.
T Consensus 680 iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~~~~LE~~R~~~l~ 759 (995)
T 2ycu_A 680 IRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERASEQT 759 (995)
T ss_dssp HHHHHHSCCEEEEHHHHHHHHGGGSTTTSCSCCCCSCCSCCCSCCCSSEEESSEEEESSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCChhheeecceEEEEecchhhhHHHHHHHHhh
Confidence 9999999999999999999999999886543 467899999999988764 8999999999999999999999999988
Q ss_pred hh-----HHHHHHHHhhhccchhhhchhhhhHhhhhHhhhhcchhhccccccchhhhhHHHHHH
Q 001117 376 RS-----ASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLR 434 (1151)
Q Consensus 376 ~a-----a~~IQ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R 434 (1151)
.+ |..++.|+|+..++..+++.+.++..||+.+||+.+++.............||..++
T Consensus 760 ~~eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekpp~~~ek~rLeal~~ 823 (995)
T 2ycu_A 760 KSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYN 823 (995)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHCSSSC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 65 455777889988888899999999999999999988777665443333344555444
No 7
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=2e-100 Score=973.17 Aligned_cols=419 Identities=39% Similarity=0.673 Sum_probs=381.7
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
|||+++|.++||+|++.+++|.|++++++++|..+||||||+||++||+|||.+||.+|+++. ...+||||||||||+|
T Consensus 383 gv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~~-~~~~IgvLDI~GFE~f 461 (1010)
T 1g8x_A 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSER-KAYFIGVLDISGFEIF 461 (1010)
T ss_dssp TSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS-CSEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cCceeeeccCcccccC
Confidence 799999999999999999999999999999999999999999999999999999999998765 6789999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhc-CCcchhHhhHhhhcCCCCChH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEK-KPGGIIALLDEACMFPRSTHE 158 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldlie~-~~~Gil~lLdee~~~p~~td~ 158 (1151)
+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+| .||++|||||++ +|.|||+||||||++|++||+
T Consensus 462 ~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~ 541 (1010)
T 1g8x_A 462 KVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDN 541 (1010)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHH
T ss_pred CcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChH
Confidence 999999999999999999999999999999999999999999999 599999999998 488999999999999999999
Q ss_pred HHHHHHHHHhc-CCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchh--hc
Q 001117 159 TFAQKLYQTFK-NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE--ES 235 (1151)
Q Consensus 159 ~~~~kl~~~~~-~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--~~ 235 (1151)
+|++|++++++ +|++|.+|+.+...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+.||+..+. ..
T Consensus 542 ~f~~kl~~~~~~~~~~f~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~~~lf~~~~~~~~~ 621 (1010)
T 1g8x_A 542 TLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRA 621 (1010)
T ss_dssp HHHHHHHHHHTTTCTTEECCTTCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHCHHHHSCC
T ss_pred HHHHHHHHHhcCCCCCcccCCCCCCCEEEeeeceEEEEeecCccccccccccHHHHHHHHhCcHHHHHHHhcccccccCC
Confidence 99999999999 9999999998888999999999999999999999999999999999999999999999987531 12
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHH
Q 001117 236 SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEF 315 (1151)
Q Consensus 236 ~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F 315 (1151)
.++++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||+.+|++||||+||+|+|||+++|||+|++|.+|
T Consensus 622 ~k~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F 701 (1010)
T 1g8x_A 622 KKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701 (1010)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHHHTTSEEEEEEEECSCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHTTSCCEEEEHHHH
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhcCCeeeeeecCCcccccCCcChhhcchhcccCccHHHHHHHHhCCcccccHHHH
Confidence 23345789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCCccHHHHHHHHHhhcCCC--CcccccceeeeecccccchhhhhhhccchhHHHHHHHHhhhccchh
Q 001117 316 VDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKN 393 (1151)
Q Consensus 316 ~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R~~~l~~aa~~IQ~~~R~~l~Rk~ 393 (1151)
+.||++|+|....+..|.+++|+.||..++++ +|++|+||||||+|+++.||.+|.+++..+++.||-..|+
T Consensus 702 ~~RY~~L~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~l~~LE~~R~~~l~~~~~~iQY~~~a------ 775 (1010)
T 1g8x_A 702 VKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKRA------ 775 (1010)
T ss_dssp HHHHGGGSTTCCTTCSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHhCCCCCcCCCCHHHHHHHHHHHcCCCccceeehhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 99999999983223568999999999999875 8999999999999999999999999999999998843332
Q ss_pred hhchhhhhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHH
Q 001117 394 YIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMY 436 (1151)
Q Consensus 394 y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~ 436 (1151)
..++.++|+..++...+. ...+...||+.++.|
T Consensus 776 --------~~L~~WIr~kqa~l~~r~--~~~sl~~IQ~ll~~f 808 (1010)
T 1g8x_A 776 --------NELVQWINDKQASLESRD--FGDSIESVQSFMNAH 808 (1010)
T ss_dssp --------HHHHHHHHHHHHHHHCCC--CCSSHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHhhh--ccccHHHHHHHHHHH
Confidence 234556666666433322 234667777776655
No 8
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=9.6e-100 Score=929.55 Aligned_cols=373 Identities=38% Similarity=0.655 Sum_probs=334.4
Q ss_pred CCCHHHHHHHHhhceEeec----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccC
Q 001117 1 MCDAKALEDSLCKREIVTR----DETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYG 76 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~----~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~G 76 (1151)
|||+++|.++||+|++.++ +|.++++++++||..+||||||+||++||+|||.+||.+|+.+.....+||||||||
T Consensus 310 gv~~~~L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~G 389 (697)
T 1lkx_A 310 KTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTTEKGPVIGILDIYG 389 (697)
T ss_dssp TSCHHHHHHHHHBCC----------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCEEEEEECCC
T ss_pred CCCHHHHHHHHhccEEeeccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeEEeecccc
Confidence 7999999999999999999 999999999999999999999999999999999999999987766789999999999
Q ss_pred CccccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCCC
Q 001117 77 FESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRST 156 (1151)
Q Consensus 77 FE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~t 156 (1151)
||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++|||||++||.|||+||||||++|++|
T Consensus 390 FE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~t 469 (697)
T 1lkx_A 390 FEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKST 469 (697)
T ss_dssp CCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCC
T ss_pred ccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCC------CCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCccccccccc
Q 001117 157 HETFAQKLYQTFKNHKRFSKPK------LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLP 230 (1151)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~------~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~ 230 (1151)
|++|++||++++++|++|.+|+ .+...|+|+||||+|+|+++||++||+|+++++++++|++|+++||+.||+.
T Consensus 470 D~~f~~kl~~~~~~~~~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~l~~lf~~ 549 (697)
T 1lkx_A 470 DQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPP 549 (697)
T ss_dssp HHHHHHHHHHHSSSSTTEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCSHHHHHHCC-
T ss_pred hHHHHHHHHHHhcCCCccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccHHHHHHHhccchHHHHHhccc
Confidence 9999999999999999998865 2357999999999999999999999999999999999999999999999986
Q ss_pred chhhccCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCcc
Q 001117 231 LAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRK 310 (1151)
Q Consensus 231 ~~~~~~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~ 310 (1151)
... ..+..+++||+++||.||+.||++|++|+||||||||||+.|.|+.||..+|++||||+||+|+|||+++|||+|+
T Consensus 550 ~~~-~~~~~r~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~ 628 (697)
T 1lkx_A 550 TRP-EDSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRI 628 (697)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHHTSHHHHHHHHHSCSBCC
T ss_pred ccc-ccccCCCCcHHHHHHHHHHHHHHHHHccCCcceEeecCCCcCCCCCcChhhccccCcccccHHHHHHHhcCCCccc
Confidence 532 2233467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhhccCCC-CccHHHHHHHHHhhcCCC--Ccccccceeeeecc-cccchhhhhhhcc
Q 001117 311 PFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAG-QMADLDARRTEVL 374 (1151)
Q Consensus 311 ~~~~F~~ry~~l~~~~~~~-~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~-~~~~Le~~R~~~l 374 (1151)
+|.+|+.||++|+|..+.. ..|++++|+.||..++++ +|++|+||||||++ .++.||.+|++++
T Consensus 629 ~~~eF~~RY~~L~~~~~~~~~~~~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~l~~LE~~R~~~l 696 (697)
T 1lkx_A 629 EYTRFYNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRELEM 696 (697)
T ss_dssp BSHHHHTTSCSSSCC---------CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHHHHHTCC----
T ss_pred cHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcCcEEeCCeeEEEeCCchHHHHHHHHHhhC
Confidence 9999999999999875432 357899999999999876 89999999999996 7899999998765
No 9
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=1.4e-99 Score=931.60 Aligned_cols=377 Identities=42% Similarity=0.743 Sum_probs=315.2
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
|||+++|.++||+|++.+++|.+++++++++|..+||||||+||+|||+|||.+||.+|+.... ..+||||||||||+|
T Consensus 383 gv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~-~~~IGvLDI~GFE~F 461 (770)
T 1w9i_A 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK-AYFIGVLDIYGFEIF 461 (770)
T ss_dssp TCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC-SEEEEEEECCCCCCC
T ss_pred CCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCeeeeccCcccccc
Confidence 7999999999999999999999999999999999999999999999999999999999986554 889999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcC-CcchhHhhHhhhcCCCCChH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKK-PGGIIALLDEACMFPRSTHE 158 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldlie~~-~~Gil~lLdee~~~p~~td~ 158 (1151)
+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+| .||++|||||+++ |.|||+||||||++|++||+
T Consensus 462 ~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~ 541 (770)
T 1w9i_A 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDN 541 (770)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHH
T ss_pred ccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChH
Confidence 999999999999999999999999999999999999999999999 5999999999984 88999999999999999999
Q ss_pred HHHHHHHH-HhcCCCCcCCCCCCCCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhh--c
Q 001117 159 TFAQKLYQ-TFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE--S 235 (1151)
Q Consensus 159 ~~~~kl~~-~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~--~ 235 (1151)
+|++||+. ++++|++|.+|+.+...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+.||+..... .
T Consensus 542 ~f~~kL~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~~~~~~ 621 (770)
T 1w9i_A 542 TLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRA 621 (770)
T ss_dssp HHHHHHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCSSTTHHHHHHCHHHHCCC
T ss_pred HHHHHHHHHhcCCCCCccCCCCCCCceEeeccCccccccccChhhhccCcccHHHHHHHHhchHHHHHHHhhccCCCCCC
Confidence 99999765 56899999999988899999999999999999999999999999999999999999999999864321 1
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHH
Q 001117 236 SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEF 315 (1151)
Q Consensus 236 ~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F 315 (1151)
.++++++||+++|+.||+.||++|++|+||||||||||+.|.|+.||..+|++||||+||||+|||+++|||+|++|.+|
T Consensus 622 ~k~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF 701 (770)
T 1w9i_A 622 KKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADF 701 (770)
T ss_dssp EETTEECCHHHHHHHHHHHHHHHHHTSEEEEEEEECSCSSCCSSCCCHHHHHHHHHHSSHHHHHHHTTSSCCEEEESCC-
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHhcCceeeeeecCCcccccCccCchhhHhHhcccchHHHHHHHHhcCcccccHHHH
Confidence 12335689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCC-CCccHHHHHHHHHhhcCCC--CcccccceeeeecccccchhhhhhhccchhHH
Q 001117 316 VDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSAS 379 (1151)
Q Consensus 316 ~~ry~~l~~~~~~-~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R~~~l~~aa~ 379 (1151)
+.||++|+| .+. +..|.+++|+.||..++++ +|++|+||||||+|+++.||.+|.+++..+++
T Consensus 702 ~~RY~~L~~-~~~~~~~d~k~~~~~lL~~~~~~~~~~~~G~TKVF~r~~~l~~LE~~R~~~l~~~~~ 767 (770)
T 1w9i_A 702 VKRYYLLAP-NVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARIEEARELRGDYKDD 767 (770)
T ss_dssp -----------------------------------CCCCCSSEEEECTTTTTC--------------
T ss_pred HHHHHHhcc-ccccCCCCHHHHHHHHHHhcCCCcccEEeCCeeEEecccHHHHHHHHHHHHHHHHhc
Confidence 999999998 443 3458899999999998775 89999999999999999999999999887654
No 10
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=8.9e-100 Score=936.72 Aligned_cols=374 Identities=40% Similarity=0.720 Sum_probs=318.0
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001117 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1151)
|||+++|.++||+|++.+++|.++++++++||..+||||||+||++||+|||.+||.+|+++....++||||||||||+|
T Consensus 389 gv~~~~L~~aL~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f 468 (783)
T 4db1_A 389 GLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIF 468 (783)
T ss_dssp TCCHHHHHHHHHSCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSEEEEEEECCCCCCC
T ss_pred CCCHHHHHHhhcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEecccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987667899999999999999
Q ss_pred cCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhHhhHhhhcCCCCChHH
Q 001117 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1151)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~ 159 (1151)
+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+| .||++||||||+ |.|||+||||||++|++||++
T Consensus 469 ~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~t 547 (783)
T 4db1_A 469 DFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMT 547 (783)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999 599999999997 679999999999999999999
Q ss_pred HHHHHHHHh-cCCCCcCCCCCC----CCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccccccccchhh
Q 001117 160 FAQKLYQTF-KNHKRFSKPKLA----RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE 234 (1151)
Q Consensus 160 ~~~kl~~~~-~~~~~~~~p~~~----~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~ 234 (1151)
|++||+++| ++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+.||+.....
T Consensus 548 f~~kl~~~~~~~~~~f~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~lf~~~~~~ 627 (783)
T 4db1_A 548 FKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGA 627 (783)
T ss_dssp HHHHHHHHHTTTCTTEECCCC----C-CCEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHHHSCC--
T ss_pred HHHHHHHHhcCCCCCccCCCCCCCCCCCCeEEeCcCCceEEeCcChhhhccccccHHHHHHHHHCccHHHHHHhhccccc
Confidence 999999887 899999999864 578999999999999999999999999999999999999999999999763211
Q ss_pred -----c-----cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhc
Q 001117 235 -----S-----SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCA 304 (1151)
Q Consensus 235 -----~-----~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~ 304 (1151)
+ .+.+.++||+++||.||+.||++|++|+||||||||||+.|.|+.||..+|++||||+||||+|||+++
T Consensus 628 ~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~ 707 (783)
T 4db1_A 628 DAPIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRK 707 (783)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHHT
T ss_pred cccccCccCCCCcCCCCccHHHHHHHHHHHHHHHHHccCCEEEEeeCCCcccCCCcccchhhheeccccChHhheeehhc
Confidence 1 112245899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccChHHHHHHHhhhhhccCCCC--ccHHHHHHHHHhhcCCC--Ccccccceeeeecccccchhhhhhhccc
Q 001117 305 GYPTRKPFDEFVDRFGILASKVLDGS--SDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLG 375 (1151)
Q Consensus 305 Gyp~r~~~~~F~~ry~~l~~~~~~~~--~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R~~~l~ 375 (1151)
|||+|++|.+|+.||++|+|..+... .|.+++|+.||..++++ +|++|+||||||+|+++.||.+|.+++.
T Consensus 708 Gyp~R~~f~eF~~RY~~L~~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVFlr~g~~~~LE~~R~~~l~ 782 (783)
T 4db1_A 708 GFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLS 782 (783)
T ss_dssp SCCEEEEC--------------------------CCHHHHSSSSCGGGEEECSSEEEECTTHHHHHHHHC-----
T ss_pred CCCccCcHHHHHHHHHHhCccccCCCCCCCHHHHHHHHHHhCCCCcCeEEECCEEEEECcCHHHHHHHHHHHHhc
Confidence 99999999999999999999865432 58899999999999875 7999999999999999999999998765
No 11
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=8e-99 Score=933.62 Aligned_cols=386 Identities=38% Similarity=0.635 Sum_probs=347.7
Q ss_pred CCCHHHHHHHHhhceEe-----ecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001117 1 MCDAKALEDSLCKREIV-----TRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1151)
Q Consensus 1 ~~~~~~l~~~L~~r~~~-----~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~ 75 (1151)
|||+++|.++||+|++. ++|+.++++++++||..+||||||+||++||+|||.+||.+|... ....+|||||||
T Consensus 376 gv~~~~L~~aL~~r~~~t~~g~~~ge~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~IGvLDI~ 454 (784)
T 2v26_A 376 GLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE-TSSYFIGVLDIA 454 (784)
T ss_dssp TCCHHHHHHHHHEEEC-----------CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS-CCSEEEEEEECC
T ss_pred CCCHHHHHHHHhhcEEeccccCCCCCeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccceeeecccC
Confidence 79999999999999997 679999999999999999999999999999999999999999764 457899999999
Q ss_pred CCccccCCchhhhHhhhchHHHhhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhHhhHhhhcCCCC
Q 001117 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1151)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~ 155 (1151)
|||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++||||||+||.|||+||||||++|++
T Consensus 455 GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~ 534 (784)
T 2v26_A 455 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQP 534 (784)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSC
T ss_pred CcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCceEEEeeCcceEEeccchhhhhchhhhHHHHHHHhhccCcccc
Q 001117 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1151)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1151)
||++|++||++++++|++|.+|+.+ ...|+|+||||+|+|+++||++||+|+++++++.+|++|+++||+
T Consensus 535 tD~~f~~kl~~~~~~~~~~~~p~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~l~ 614 (784)
T 2v26_A 535 SDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIR 614 (784)
T ss_dssp CHHHHHHHHHHHTTTCTTEECGGGCSSGGGTTSCTTSEEEEEETTEEEEEECTTHHHHTBCCCCHHHHHHHHTCSCHHHH
T ss_pred ChHHHHHHHHHHhCCCcccccCCCccccccccccCCCceEeeecCccEeeeccCHHHhccchhhHHHHHHHHhchhhHHH
Confidence 9999999999999999999888653 358999999999999999999999999999999999999999999
Q ss_pred cccccchhhc------cCCCCCcchHHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhhH
Q 001117 226 SLFLPLAEES------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAI 299 (1151)
Q Consensus 226 ~lf~~~~~~~------~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~i 299 (1151)
.||+.....+ .++.+++||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|
T Consensus 615 ~Lf~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~i 694 (784)
T 2v26_A 615 ELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 694 (784)
T ss_dssp HHC----------------CCCCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHTTHHHHH
T ss_pred HHcccccccccCcccCCCCCccccHHHHHHHHHHHHHHHHHccCCeeEEEecCCcccccCccccccccccccccccHHHH
Confidence 9998642111 1122458999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHHhhhhhccCCCCccHHHHHHHHHhhcCCC--Ccccccceeeeecccccchhhhhhhccchh
Q 001117 300 RISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRS 377 (1151)
Q Consensus 300 ri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~il~~~~~~--~~~~G~TkVFlr~~~~~~Le~~R~~~l~~a 377 (1151)
||+++|||+|++|.+|+.||++|+|..+. ..|.+++|+.||..++++ +|++|+||||||+|+++.||+++.......
T Consensus 695 ri~r~Gyp~R~~f~eF~~RY~~L~~~~~~-~~d~~~~~~~ll~~~~~~~~~~~~G~TKVF~r~g~~~~le~~~~~~~~~~ 773 (784)
T 2v26_A 695 DLMQGGFPSRASFHELYNMYKKYMPDKLA-RLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHL 773 (784)
T ss_dssp HHHTSCCSEEEEHHHHHHHHGGGCCHHHH-TSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHH
T ss_pred HHHHhcCCccccHHHHHHHHhhcCCcccC-CCCHHHHHHHHHHHcCCCcCcEEeCCceEEEcCCHHHHHHHHHhhCHHHH
Confidence 99999999999999999999999986543 358899999999999875 899999999999999999999866554444
Q ss_pred HHHHHHHHhhhc
Q 001117 378 ASIIQRKVRSYL 389 (1151)
Q Consensus 378 a~~IQ~~~R~~l 389 (1151)
+. |++.+|+|+
T Consensus 774 ~~-ii~~v~~wl 784 (784)
T 2v26_A 774 AE-LVKRVNHWL 784 (784)
T ss_dssp HH-HHHHHHHHC
T ss_pred HH-HHHHHHhhC
Confidence 43 557788775
No 12
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-62 Score=566.73 Aligned_cols=359 Identities=16% Similarity=0.267 Sum_probs=283.9
Q ss_pred hhHhhhhhhhhhhhcHHHHHHhcc-----ccCCcc-----CCCcchHHHHHHHHh-hhcc-hhhhhhHHHHHHHHHHHHh
Q 001117 735 DSKLRRSHIEHQHENVDALINCVA-----KNLGYC-----NGKPVAAFTIYKCLL-HWKS-FEAERTSVFDRLIQMIGSA 802 (1151)
Q Consensus 735 ~~~~~~~l~e~~~e~~~~l~~~i~-----~~~~~~-----~~~P~~A~il~~cl~-~~~~-~~~e~~~ll~~ii~~i~~~ 802 (1151)
..+..++| |+.....|.+++.+. +.++.. +.+.+|||+||+|+| ||+. +..+.+.+|++++++|+++
T Consensus 6 ~~~~~~ll-~~~~~~~~ei~~~l~~~~~ip~~~~~~~~~~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~ 84 (419)
T 2f6h_X 6 NEELYRLL-EDTEILNQEITEGLLKGFEVPDAGVAIQLSKRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKV 84 (419)
T ss_dssp HHHHHHHH-HCHHHHHHHHHHTTTTTCCCCCCSTTCCCCHHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-hhhhhccHHHHHHHHHHccCCCCccccCCCCCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 34667777 443344444444333 333321 223488999999999 9998 8889999999999999999
Q ss_pred hccc--CC-ccchhhHHHhHHHHHHHH--HHHhhhcCCCCCCCCCCCCCccchhhhhhccCCCCCcchhhhhhhhhhhHh
Q 001117 803 IENE--DD-NDHMAYWLSNTSTLLFLL--QRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVR 877 (1151)
Q Consensus 803 i~~~--~d-~~~l~fWLsN~~~Ll~~l--q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1151)
++++ +| ++.++|||||+++||||| +++....+.+ ++. ... +. .+.
T Consensus 85 v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~~~~------~~~---------------~~~--~~-------~~~ 134 (419)
T 2f6h_X 85 VTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILTEET------FKN---------------GMT--DE-------EYK 134 (419)
T ss_dssp HHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------CC--HH-------HHH
T ss_pred HHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhccCc------ccc---------------ccc--hh-------hHH
Confidence 9876 34 588999999999999999 6665333221 000 000 11 111
Q ss_pred hhhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccc---C--CCcCCCCCCcccHHHHHH
Q 001117 878 QVEAKYP--ALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLR---S--GRSFGKDSASSHWQSIID 950 (1151)
Q Consensus 878 ~v~~~~~--~~~~~q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~il~ 950 (1151)
+|| +..|+++|.+++.+||++|+++++++|.|++++||+.+.+..+.... + +..+. .++.++|++|++
T Consensus 135 ----~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~p~l~paIl~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~Il~ 209 (419)
T 2f6h_X 135 ----EYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQKKAINAVVISESLPGFSAGETSGFLNKIFA-NTEEYTMDDILT 209 (419)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTTTC----------------CCCHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccccccccc-CCCccCHHHHHH
Confidence 232 56899999999999999999999999999999999887765431110 0 11122 334579999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhcccCccCCcchhHHHhchHHHHHHHhhcccccccccHHHhH
Q 001117 951 SLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELK 1030 (1151)
Q Consensus 951 ~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~ 1030 (1151)
+|++++++|+.|+|||.+++|+|+||||||||++||+||+|++||||++|+||||||+.||+||+++|+ +.+|++|+
T Consensus 210 ~L~~~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~~~cs~s~G~qIr~nls~Le~W~~~~~l---~~a~~~L~ 286 (419)
T 2f6h_X 210 FFNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNVTRLEEWCKTHGL---TDGTECLQ 286 (419)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTC---TTHHHHTH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhHHHHHhhHHHHHHHHHHcCC---hhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999994 46889999
Q ss_pred HHHHHHhHHhhcccccCCHHHHHhccCcCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHHhhhccCCCC---------
Q 001117 1031 HIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDA--------- 1101 (1151)
Q Consensus 1031 ~i~Qa~~lLq~~kk~~~~~~~i~~~~c~~L~~~Qi~kil~~Y~~d~~e~~~v~~~~i~~v~~~~~~~~~~~--------- 1101 (1151)
||+||++|||++|++..|+++| +++||+|||+||+||+++||||+|| ++||++||++|++++++++++.
T Consensus 287 ~l~Qa~~lLq~~k~~~~d~~~i-~~~C~~Ln~~Ql~~il~~Y~~d~~e-~~v~~~~i~~v~~~~~~~~~~~~~~~~~~~~ 364 (419)
T 2f6h_X 287 HLIQTAKLLQVRKYTIEDIDIL-RGICYSLTPAQLQKLISQYQVADYE-SPIPQEILRYVADIVKKEAALSSSGNDSKGH 364 (419)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHH-HHHTTTSCHHHHHHHHHHCCCCTTS-CCCCHHHHHHHHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHhhCCCchhhHHHH-HHHhhcCCHHHHHHHHHhCCCccCC-CCCCHHHHHHHHHHHhccccccccccccccc
Confidence 9999999999999888888787 6999999999999999999999997 6999999999999999876542
Q ss_pred -C-CCcccc--cCCCcccccccccccccccccccCCC--cchhhh
Q 001117 1102 -T-SNSFLL--DDNSSIPFSVDDLSNSLQEKDFLDVK--AAEELL 1140 (1151)
Q Consensus 1102 -~-~~~ll~--D~~~~~Pf~~~~~~~~~~~~~~~~i~--~p~~l~ 1140 (1151)
. +++||| |.++.+||+.++. -.+++|+ ||+.|+
T Consensus 365 ~~~~~~~ll~~d~~~~~Pf~~p~~------~~~~~i~~~iP~~l~ 403 (419)
T 2f6h_X 365 EHSSSIFITPETGPFTDPFSLIKT------RKFDQVEAYIPAWLS 403 (419)
T ss_dssp ----CCSCCCCCCCCCCGGGGSCC------CCCCCCCCCCCTTCC
T ss_pred ccccccccccCCcccCCCcCCCCc------CcHHHHHhhCCCccc
Confidence 1 268999 5555699998873 3677777 998874
No 13
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-54 Score=484.28 Aligned_cols=311 Identities=17% Similarity=0.187 Sum_probs=241.5
Q ss_pred hhhhhcHHHHHHhccccCCcc-CCCcchHHHHHHHHh-hhcc-hhhhhhHHHHHHHHHHHHhhccc--CC-ccchhhHHH
Q 001117 744 EHQHENVDALINCVAKNLGYC-NGKPVAAFTIYKCLL-HWKS-FEAERTSVFDRLIQMIGSAIENE--DD-NDHMAYWLS 817 (1151)
Q Consensus 744 e~~~e~~~~l~~~i~~~~~~~-~~~P~~A~il~~cl~-~~~~-~~~e~~~ll~~ii~~i~~~i~~~--~d-~~~l~fWLs 817 (1151)
....|..++|++. ++++... ...-.||||||+|++ +|+. +..++.+||..++++|++++++. +| +..++||||
T Consensus 28 ~~~~ei~~gl~~~-ip~~~~~~~evl~PA~ii~~~~~~m~~~gl~~~s~~fl~~v~~~I~~~v~~~~~~d~i~~g~FWLs 106 (386)
T 3mmi_A 28 CYTLEVTEGYLKK-VNVTEVNGDNVLGPIHVITTVVSSLVRNGLLIQSSKFISKVLLTVESIVMSLPKDETMLGGIFWLS 106 (386)
T ss_dssp HHHHHHHHHTSTT-CCCSCCCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHhhc-CCCCCCCccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccccchHHHH
Confidence 4446667777777 4444222 234477999999998 5555 77888999999999999999863 45 899999999
Q ss_pred hHHHHHHHH--HHHhhhcCCCCCCCCCCCCCccchhhhhhccCCCCCcchhhhhhhhhhhHhhhhccchhHHHHHHHHHH
Q 001117 818 NTSTLLFLL--QRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAY 895 (1151)
Q Consensus 818 N~~~Ll~~l--q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~q~L~~~ 895 (1151)
|+++|++|+ +++ ....+ + .+++... ...+++.|.++
T Consensus 107 N~~~l~sFv~~~q~----~~~~~---------------------------~------~d~y~~l-----l~e~r~~l~~L 144 (386)
T 3mmi_A 107 NLSRLPAFAANQKT----LYEAN---------------------------G------GDEKDKL-----TLIYLNDLENE 144 (386)
T ss_dssp HHTTHHHHHHHHHT----TC-----------------------------------------CHH-----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HHHcc---------------------------C------hhHHHHH-----HHHHHHHHHHH
Confidence 999999975 342 11000 0 0111111 12456777766
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 001117 896 VE----KIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQK 971 (1151)
Q Consensus 896 ~~----~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q 971 (1151)
.. +||++|+++++++|+|++ |+++..+ . ++.+. +++.++|++|+++|++++++|+.|+|||.++.|
T Consensus 145 ~~~~~e~IY~~~i~~lkk~L~~il------P~~~~~~-~--~k~~~-~~~~~s~~~Il~~L~~~~~~L~~~~V~p~li~Q 214 (386)
T 3mmi_A 145 TLKVFDKIYSTWLVKFMKHASAHI------EIFDMVL-N--EKLFK-NSGDEKFAKLFTFLNEFDAVLCKFQVVDSMHTK 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------THHHHHT-C--GGGSS-SCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhc------ccccccc-c--ccccC-CCCccCHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 66 999999999999999987 3332211 1 11111 345789999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhHhhhcccCccCCcchhHHHhchHHHHHHHhhcccccccccHHHhHHHHHHHhHHhhcccccCCHHH
Q 001117 972 IFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDE 1051 (1151)
Q Consensus 972 ~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~ 1051 (1151)
+|+|+||||||++||+||+|++||||++|+||||||++||+||++ | .+.++++|+||+||++|||++|++..|.+.
T Consensus 215 lfsQLF~fIna~lFN~LLlRr~~cs~s~G~qIr~NLs~LEeW~~~-~---l~~a~~~L~~L~QA~~LLQ~~K~t~~Di~~ 290 (386)
T 3mmi_A 215 IFNDTLKYLNVMLFNDLITKCPALNWKYGYEVDRNIERLVSWFEP-R---IEDVRPNLIQIIQAVKILQLKISNLNEFKL 290 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHTT-T---SSCCGGGGHHHHHHHHHHHCCCCCHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHccCcccCcchHHHHHhhHHHHHHHHHh-c---cHHHHHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999 6 467789999999999999999877766656
Q ss_pred HHhccCcCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHHhhhccCCC-CCCCcccccCCC
Q 001117 1052 ITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSND-ATSNSFLLDDNS 1112 (1151)
Q Consensus 1052 i~~~~c~~L~~~Qi~kil~~Y~~d~~e~~~v~~~~i~~v~~~~~~~~~~-~~~~~ll~D~~~ 1112 (1151)
+ +++||+|||+||+|||++||||+|.++|||++|+++|+++++++++. +....+|+|.++
T Consensus 291 i-~~~C~~Lsp~QL~kIL~~Y~p~~~~E~~V~~e~i~~v~~~lk~~~~~~~~~~~i~~~~~~ 351 (386)
T 3mmi_A 291 L-FDFWYALNPAQIQAILLKYKPANKGEAGVPNEILNYLANVIKRENLSLPGKMEIMLSAQF 351 (386)
T ss_dssp H-HTTCCSSCHHHHHHHHHTBCCC-----CCCHHHHHHHHHHHHHHHHHCSSCCCSSCCCCC
T ss_pred H-HHhcccCCHHHHHHHHHhCcCCCCCCCCCCHHHHHHHHHHHhcccccCCcchhhhhcccc
Confidence 6 79999999999999999999999944799999999999999877542 334568887776
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.87 E-value=3.1e-21 Score=248.54 Aligned_cols=124 Identities=31% Similarity=0.301 Sum_probs=100.1
Q ss_pred hhhhchhhhhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 001117 392 KNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDM--CFSAVCIQTGMRGMAARNELRFRR 469 (1151)
Q Consensus 392 k~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~--r~a~i~iQs~~Rg~~aR~~~~~~r 469 (1151)
.+..++..+++.||+.||||++|+.|.++| .||+.||++||+|.+|+.|..+ ..|++.||+.|||+.+|+.+...+
T Consensus 762 ~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r--~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr 839 (1080)
T 2dfs_A 762 IRADKLRAACIRIQKTIRGWLMRKKYMRMR--RAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMR 839 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHH
Confidence 334445678889999999999999888776 6888999999999998887755 458888999999999998887665
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhh--hHHHhhhhhhhHHHHHHHHHHHHHH
Q 001117 470 QTRASILIQSHCRKYLARLHYMKLK--KAAITTQCAWRGKVARRELRKLKMA 519 (1151)
Q Consensus 470 ~~~aa~~IQ~~~R~~~~r~~~~~~~--~a~i~iQ~~~R~~~arr~l~~lk~~ 519 (1151)
.+++.||++|||+.+|+.|..++ .+++.||+.||++++|+.+..++.+
T Consensus 840 --~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~a 889 (1080)
T 2dfs_A 840 --DATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889 (1080)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57888999999999998887665 4788889999999988887665443
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.18 E-value=5e-11 Score=157.47 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=22.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHH
Q 001117 424 ASCLRIQRDLRMYLAKKAYKDMC---FSAVCIQTGMRGMAAR 462 (1151)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~~~r---~a~i~iQs~~Rg~~aR 462 (1151)
.+++.||++||||++|+.|.+++ .+++.||+.+|++.+|
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~ 834 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNV 834 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766543 3444444444444444
No 16
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.01 E-value=5.6e-11 Score=98.80 Aligned_cols=57 Identities=32% Similarity=0.487 Sum_probs=51.9
Q ss_pred hccchhHHHHHHHHhhhccchhhhchhhhhHhhhhHhhhhcchhhccccccchhhhh
Q 001117 372 EVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLR 428 (1151)
Q Consensus 372 ~~l~~aa~~IQ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~ 428 (1151)
++++.+|+.||+.||||++|+.|.+++.|++.||++|||+++|+.+..++++.||++
T Consensus 2 ~~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~aA~~ 58 (58)
T 2ix7_C 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAATT 58 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccC
Confidence 456789999999999999999999999999999999999999999999998888763
No 17
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.87 E-value=2.8e-09 Score=88.53 Aligned_cols=53 Identities=38% Similarity=0.586 Sum_probs=49.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001117 423 EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASI 475 (1151)
Q Consensus 423 ~~AAi~IQ~~~R~~~~rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~r~~~aa~ 475 (1151)
..||++||++||||.+|+.|..++.+++.||+.+||+.+|+.+..+++++||+
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~aA~ 57 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAAT 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 47999999999999999999999999999999999999999999988887774
No 18
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.6e-09 Score=86.23 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=37.9
Q ss_pred hhhhhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHHHHHHHH
Q 001117 397 LRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAY 442 (1151)
Q Consensus 397 ~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y 442 (1151)
++.+++.||++|||+++|+.+..++++.||++||++||||.+|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 4567788888888888888888888777888888888888888876
No 19
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.1e-07 Score=75.58 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001117 445 MCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHY 490 (1151)
Q Consensus 445 ~r~a~i~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~ 490 (1151)
++.+++.||+.+||+++|+.+..++.+.||+.||++||||.+|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 3456666666666666666666666667888888888888888776
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=98.21 E-value=5.1e-07 Score=76.34 Aligned_cols=47 Identities=36% Similarity=0.399 Sum_probs=40.8
Q ss_pred hhhccchhHHHHHHHHhhhccchhhhch---hhhhHhhhhHhhhhcchhh
Q 001117 370 RTEVLGRSASIIQRKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTV 416 (1151)
Q Consensus 370 R~~~l~~aa~~IQ~~~R~~l~Rk~y~~~---r~a~i~IQ~~~Rg~lar~~ 416 (1151)
|++++...++.||+.+|||++|+.|.++ +.|+..||+++|+|++++.
T Consensus 1 Rd~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5677888899999999999999999998 7888899999999988543
No 21
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.03 E-value=1.6e-06 Score=72.99 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=36.8
Q ss_pred ccchhHHHHHHHHhhhccchhhhch---hhhhHhhhhHhhhhcchhh
Q 001117 373 VLGRSASIIQRKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTV 416 (1151)
Q Consensus 373 ~l~~aa~~IQ~~~R~~l~Rk~y~~~---r~a~i~IQ~~~Rg~lar~~ 416 (1151)
++...++.||+.+|||++|+.|.++ +.|+..||+++|+|++++.
T Consensus 2 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 2 RIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3556788899999999999999888 7888899999999988554
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.45 E-value=0.048 Score=55.26 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL 670 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~L 670 (1151)
++.|.+++..|......+...+.++|.....++.........+++.+.++...-+.+.-|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alL 149 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFL 149 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555444444444444444444433333333
No 23
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.28 E-value=8.8e-05 Score=62.51 Aligned_cols=47 Identities=28% Similarity=0.465 Sum_probs=36.7
Q ss_pred hhhhhHhhhhHhhhhcchhhccccccch-hhhhHHHHHHHHHHHHHHH
Q 001117 397 LRRSAIHIQAACRGQLARTVYESMRREA-SCLRIQRDLRMYLAKKAYK 443 (1151)
Q Consensus 397 ~r~a~i~IQ~~~Rg~lar~~~~~~r~~~-AAi~IQ~~~R~~~~rk~y~ 443 (1151)
+...++.+|+.+||+++|+.+.++.... |+.+||+++|+|..++.+.
T Consensus 5 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 5 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 4567888999999999999988876444 5569999999988766543
No 24
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.27 E-value=7.3e-05 Score=62.78 Aligned_cols=45 Identities=31% Similarity=0.423 Sum_probs=35.7
Q ss_pred hhhhhHhhhhHhhhhcchhhccccccc-hhhhhHHHHHHHHHHHHH
Q 001117 397 LRRSAIHIQAACRGQLARTVYESMRRE-ASCLRIQRDLRMYLAKKA 441 (1151)
Q Consensus 397 ~r~a~i~IQ~~~Rg~lar~~~~~~r~~-~AAi~IQ~~~R~~~~rk~ 441 (1151)
+...++.+|+.+||+++|+.+.++... .|+.+||+++|+|..++.
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 446688899999999999999887644 456699999999877654
No 25
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.05 E-value=0.093 Score=53.18 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKK 638 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~ 638 (1151)
..|...+..+...+.+|+...++++..
T Consensus 98 ~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 98 SQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444444444444444444444433
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.00 E-value=0.11 Score=56.27 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES 658 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~ 658 (1151)
.++.|.++...++..+..+++.+.++..++++++....++...+...+.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~ 139 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK 139 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665555555555554444444444333
No 27
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.78 E-value=0.00037 Score=87.59 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=27.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHH
Q 001117 424 ASCLRIQRDLRMYLAKKAYKDM---CFSAVCIQTGMRGMAARNE 464 (1151)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~~~---r~a~i~iQs~~Rg~~aR~~ 464 (1151)
.+|+.||++||||++|+.|.++ +.|++.||+.+|++.+|+.
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~ 823 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4566677777777777777666 4566677777777666654
No 28
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.63 E-value=0.11 Score=73.58 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 512 ELRKLKMAARETGALQAAKNKLEKQVEEL 540 (1151)
Q Consensus 512 ~l~~lk~~a~~~~~L~~~~~~LE~kv~el 540 (1151)
-+.+|..++..++.+++....++.++++.
T Consensus 1925 GL~KL~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1925 GLKKLRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655555544443
No 29
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.57 E-value=0.3 Score=48.25 Aligned_cols=18 Identities=39% Similarity=0.383 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001117 530 KNKLEKQVEELTWRLQLE 547 (1151)
Q Consensus 530 ~~~LE~kv~el~~rl~~e 547 (1151)
...||+++.|+...|..|
T Consensus 8 i~~LekQL~E~n~kLk~E 25 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTE 25 (168)
T ss_dssp --CTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345666666666666644
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.29 E-value=0.098 Score=51.69 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDE 634 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~e 634 (1151)
+++..|...+..|+.++..|...+++
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544443
No 31
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.86 E-value=0.73 Score=65.61 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 620 KLKTLVSSLEKKIDETEKKFEETSKISEERLK-------QALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 620 kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~-------~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+.++++.++++++++++.+.+++..++..++. ++.-+++.+..|..|..+-.+.+..++.+.+.+
T Consensus 2032 ~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2032 EIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 33344444444444444444333333333333 333344444555555556666666666655443
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.64 E-value=0.18 Score=61.55 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+.++++..++++..+.++..+.+.+++..+..+....++++....++.++..++.+.++++++..++.+++.+.+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666665555555555555555555555666666666666666666666666666655
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.64 E-value=0.45 Score=51.44 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL 650 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~ 650 (1151)
++.+...+..++..+.++...+++++..+.+++....++.
T Consensus 99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~ 138 (256)
T 3na7_A 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE 138 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433333
No 34
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.39 E-value=1.3 Score=42.33 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
++++.+.....+......++..+..|+.+++.+
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555555555555444
No 35
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.39 E-value=1.4 Score=42.08 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~ 647 (1151)
+....|.+.+..|+..+.++...+++.+....++...+.
T Consensus 69 E~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kk 107 (129)
T 2fxo_A 69 ERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKR 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665555554444333
No 36
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=95.31 E-value=1.4 Score=40.60 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~ 675 (1151)
.+..|.+++..|....+.+...+.++|....+++.........+++.+.++...-+...-|+.++.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777777777777777777777777666667777777777766666666666665
No 37
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=94.93 E-value=0.69 Score=44.80 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 001117 432 DLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKA 496 (1151)
Q Consensus 432 ~~R~~~~rk~y~~~r~a~i~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a 496 (1151)
-+..|+.+.+|.+...++..+=..-.-...| ..+++.||+.+|||++|+.++.....
T Consensus 14 kV~~WLi~sRWrK~q~~~lsvIKLknKI~yR--------~~~~i~iQktvR~~L~rkkhkPRi~g 70 (148)
T 3gn4_A 14 RVNHWLICSRWKKVQWCSLSVIKLKNKIKYR--------AEACIKMQKTIRMWLCKRRHKPRIDG 70 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3677888888888777665543332222222 34789999999999999988765433
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.83 E-value=0.2 Score=61.29 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
..+.++.++..++++.++.++..++++++..+++.++++.++++.++++++..+..++..|+++.
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444444444555555555555555555555555555544
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.24 E-value=0.34 Score=46.93 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
..+.-+++...+.++..++++++++..++.+......+++.+.+++..+++++..|+.++.+|+.+++.
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555566666666666666666666666666666677777777777777777777777777654
No 40
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.96 E-value=3.6 Score=40.18 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDE-TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~e-le~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
...+.++.++++++++|-..|-+ ..+-..... ..-...+.++.+|++++.+-+..+..++.++..|+.
T Consensus 75 ~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar-------~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 75 TKAEEEADKLNKEVEDLTASLFDEANNMVADAR-------KEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666655432 222122111 112233445555666666666666666666666665
No 41
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.88 E-value=2 Score=39.16 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1151)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~ 679 (1151)
...+++.++.+|..++..++..+..++....+...++++.++.....+.++..|..+|+-|++
T Consensus 38 ~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 38 RSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333444444444444444444444444444444444444444445555555555555555443
No 42
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=93.40 E-value=0.13 Score=49.94 Aligned_cols=55 Identities=18% Similarity=0.391 Sum_probs=38.8
Q ss_pred HHHhhhccchhhhchhhhhHhhhhHhhhhcchhhccccccchhhhhHHHHHHHHHHHHHHHhh
Q 001117 383 RKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDM 445 (1151)
Q Consensus 383 ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~ 445 (1151)
+.+..|+.|.++++...++..+=..-...+. |..|+++||+.+|||++|+.|..-
T Consensus 13 ~kV~~WLi~sRWrK~q~~~lsvIKLknKI~y--------R~~~~i~iQktvR~~L~rkkhkPR 67 (148)
T 3gn4_A 13 KRVNHWLICSRWKKVQWCSLSVIKLKNKIKY--------RAEACIKMQKTIRMWLCKRRHKPR 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4567788888888887766554433333333 236889999999999999988753
No 43
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=93.07 E-value=0.033 Score=37.73 Aligned_cols=20 Identities=45% Similarity=0.642 Sum_probs=15.3
Q ss_pred ccchhhhhHHHHHHHHHHHH
Q 001117 421 RREASCLRIQRDLRMYLAKK 440 (1151)
Q Consensus 421 r~~~AAi~IQ~~~R~~~~rk 440 (1151)
+++.||++||+.||+|+.++
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888887664
No 44
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.00 E-value=2.8 Score=38.22 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1151)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le 678 (1151)
+....+++.++.++.+++..++..+..+.........+++..++.....+.++..|..+|+-++
T Consensus 36 e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 36 EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444444444444444444444444444444444455555555555556666655555544
No 45
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=92.63 E-value=0.054 Score=37.82 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.0
Q ss_pred ccchhhhhHHHHHHHHHHHHH
Q 001117 421 RREASCLRIQRDLRMYLAKKA 441 (1151)
Q Consensus 421 r~~~AAi~IQ~~~R~~~~rk~ 441 (1151)
+++.||++||+.||+|+.++.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999988765
No 46
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=92.55 E-value=6.5 Score=36.42 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1151)
.++..|.+-+...+.++..|+.++.-+..
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~~QR 74 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGTAQR 74 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333
No 47
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=92.55 E-value=1.6 Score=38.81 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
.+.+..+..+..+++..+...+....+++.....+..++..+..++.+++..+..|.....+|+.++.++++.+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666677777777777777777777777777777777776677777778888888888888887776655
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.83 E-value=7 Score=35.56 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~ 672 (1151)
..|.+.+..++.+++.++..+.+....+. +..+...+++..+..|.+.++-|++
T Consensus 47 ~sL~kk~~~lE~eld~~ee~L~ea~~kLe-------e~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 47 VQLEKQLRVTEDSRDQVLEELHKSEDSLL-------FAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33444444444444444444443333333 3333344555556666666665543
No 49
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.78 E-value=6.2 Score=38.56 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ--------ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~--------l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
...+..+|...+.+.+..-.+.+.....++.+.+++... +.++......++..+..|+.++.+.+.-++.++
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443334444444444444333333 233344445566666666666666666666655
Q ss_pred Hh
Q 001117 686 QQ 687 (1151)
Q Consensus 686 qq 687 (1151)
.+
T Consensus 136 ~q 137 (154)
T 2ocy_A 136 LQ 137 (154)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 50
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.10 E-value=7.1 Score=36.65 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVS 675 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~ 675 (1151)
+|+.+++.|++++.
T Consensus 87 dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 87 DLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.72 E-value=3.1 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEK 637 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1151)
+.+.+++++++..++++...+++...
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 445 TQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 33344444444444444444333333
No 52
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=90.42 E-value=0.24 Score=34.59 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=17.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 001117 469 RQTRASILIQSHCRKYLARLHY 490 (1151)
Q Consensus 469 r~~~aa~~IQ~~~R~~~~r~~~ 490 (1151)
+++.+|++||+.||+|+.++..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999887654
No 53
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=90.25 E-value=0.18 Score=34.18 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=16.2
Q ss_pred HHhhHHHHHHHHHHHHHHHH
Q 001117 469 RQTRASILIQSHCRKYLARL 488 (1151)
Q Consensus 469 r~~~aa~~IQ~~~R~~~~r~ 488 (1151)
+++.+|++||+.||+|+.++
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999988764
No 54
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=90.23 E-value=0.48 Score=57.28 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 565 LQSALQEMQLQFKESKEKL 583 (1151)
Q Consensus 565 L~~~l~~le~~l~~~~~~l 583 (1151)
|+.++..++.+...++..+
T Consensus 340 ~~~~~~~~~~~~~~~~~~l 358 (575)
T 2i1j_A 340 YQDRLRQMQEEMERSQANL 358 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 55
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.78 E-value=4.8 Score=35.03 Aligned_cols=69 Identities=10% Similarity=0.149 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
.+..|+.+.+....+++.++..+.+.+.........+..++.++..++.++...++++......++...
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555554444444455555556666666666666666666666665555443
No 56
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.52 E-value=2.8 Score=40.46 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1151)
Q Consensus 621 Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~ 675 (1151)
|+++++++.+++.++..++..+.-..+++.+.++++++++..|+.++.+|+.++.
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333444444444555555555555555443
No 57
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=89.45 E-value=0.88 Score=33.60 Aligned_cols=34 Identities=35% Similarity=0.562 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+.+++.+..+++..+.+|+++++-|+.||..|||
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4567777888899999999999999999999987
No 58
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.39 E-value=5.8 Score=37.29 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+..++.++.-+++.++..+++.+.+.++-......++..+..+.+.++...-...+|+.+++.|++|+.=+++
T Consensus 30 d~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 30 DQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554443333334444445555555555555566677777777777765554
No 59
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=89.11 E-value=4.5 Score=35.66 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
++..+..++.++..+++.++..+++...+.++-......++..+..+.+.++.+.-...+|+.+++.|.+|+.=++
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666777777776666666666665544444555555555555566666666677777777777776554
No 60
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.30 E-value=15 Score=33.41 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 671 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le 671 (1151)
..|.+.+..++.+++.....+......+.+ ......+++..+..|.+.++-++
T Consensus 47 ~sL~kKiq~lE~eld~~~e~l~~a~~kLe~-------~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 47 QGLQKKLKGTEDEVEKYSESVKEAQEKLEQ-------AEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444444444444433333333 33334445555555666555554
No 61
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.22 E-value=5.2 Score=38.70 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+.++..+.++..|+-++..+++++..++.||..|-+
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666777777777777777777766543
No 62
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=87.49 E-value=8.6 Score=35.41 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 658 SKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 658 ~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
..+..|...-+.+..++.+|+.||+.|.
T Consensus 77 ~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 77 EQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 3344455555555666677777776664
No 63
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.20 E-value=14 Score=32.96 Aligned_cols=8 Identities=0% Similarity=0.414 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001117 571 EMQLQFKE 578 (1151)
Q Consensus 571 ~le~~l~~ 578 (1151)
.++.++..
T Consensus 9 ~lre~l~~ 16 (97)
T 2eqb_B 9 QLKEDYNT 16 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 64
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=87.02 E-value=5.7 Score=44.18 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=80.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhcc-cCccCCcchhHHHhchHHHHHHHhh--
Q 001117 940 SASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLR-RECCTFSNGEYVKAGLAELELWCCQ-- 1016 (1151)
Q Consensus 940 ~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~-- 1016 (1151)
.++..+.+++.+|..++.. .-++|+.+..-++...|.+|+-.+.+-|+.. -+-.+-.--.++...|..+|.-+.+
T Consensus 216 ~ps~yi~dli~fL~~~f~s--l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~~~ 293 (325)
T 2a2f_X 216 IASAFITDMISYLKSTFDS--FAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASEP 293 (325)
T ss_dssp SCCHHHHHHHHHHHHHHHT--TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTTCS
T ss_pred CccHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456799999999999994 6699999999999999999999999977643 3566777778899999999999987
Q ss_pred -cccccccccHHHhHHHHHHHhHHhhc
Q 001117 1017 -AKEEYAGSSWDELKHIRQAVGFLVIH 1042 (1151)
Q Consensus 1017 -~~~~~~~~~~~~L~~i~Qa~~lLq~~ 1042 (1151)
.| .-.+.....|..|+|.++||+..
T Consensus 294 v~~-l~~~~L~~~F~eLrQli~Ll~~~ 319 (325)
T 2a2f_X 294 VPG-LKEGELSKYFLRNRQLLDLLILE 319 (325)
T ss_dssp SSS-CCSSTTGGGGHHHHHHHHHHHCC
T ss_pred CCC-cccchHHHHHHHHHHHHHHHHhh
Confidence 33 23355678899999999999854
No 65
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.93 E-value=11 Score=34.37 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+++++.++..|..++++..+++++|+.+++.+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 444444444555555555555555555554443
No 66
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.94 E-value=19 Score=32.23 Aligned_cols=21 Identities=24% Similarity=0.348 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 001117 612 EELTSENEKLKTLVSSLEKKI 632 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l 632 (1151)
...+.++.++++++++|-.+|
T Consensus 43 ~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 43 TKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555443
No 67
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=85.86 E-value=21 Score=32.80 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
.+....|+.++..++...+.+...+.+++...++++.........+.+++..+...-++..=|+.|+.
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444444444444444444444444444444444444444444443
No 68
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=84.39 E-value=5.4 Score=31.75 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 642 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+++.....+.++.++-+-...+.+++..++.++..|+.||..+|.
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 333333344445555555567788888888888888888888874
No 69
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=84.05 E-value=23 Score=31.74 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE 655 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~ 655 (1151)
..|+++...+..++..++.....++..-..--+.......++.+
T Consensus 28 ~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e 71 (96)
T 3q8t_A 28 EDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLE 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444444333333333333333333
No 70
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.55 E-value=14 Score=32.15 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=12.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 624 LVSSLEKKIDETEKKFEETSKISEERLKQALEAESK 659 (1151)
Q Consensus 624 ~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~ 659 (1151)
.++.++..+.+.+......+.+...+..++..++..
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 71
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.04 E-value=15 Score=32.50 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
..-..++.+++..+..+++.+...+....+++.....+.....++..++...++....|..+-..|+..++.+
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666655555555555555555544444555555555555555555555444
No 72
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.99 E-value=2.7 Score=40.03 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 001117 613 ELTSENEKLKTLVSSLEKKI 632 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l 632 (1151)
..+.++.+++.++++|-..+
T Consensus 64 ~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 64 KAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554443
No 73
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=82.97 E-value=5.4 Score=34.39 Aligned_cols=27 Identities=22% Similarity=0.514 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDET 635 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~el 635 (1151)
.+++.++..+..|+..+..++..+++-
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s 39 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEA 39 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444433
No 74
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=82.51 E-value=13 Score=32.71 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~L 677 (1151)
+..+...++..+++++.+.++.-.....++.....+.+.+.++--...+|+.+++.|.+++.=|
T Consensus 19 l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 19 VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666555555555565665555555555555566667777776666543
No 75
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=81.97 E-value=14 Score=33.19 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l 674 (1151)
...|..++..|-=+++-|+..++++++...++.++..+..+.++........++.++..|++++
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777788888888888877777777666655555554445555555555554444
No 76
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.85 E-value=24 Score=40.79 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
+.|+..|+++..+|++||.++.
T Consensus 134 rvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555544
No 77
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=81.18 E-value=17 Score=30.63 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETE 636 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1151)
.+++.++..+..|+..+..++..+++-.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455555556666666655555555443
No 78
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.16 E-value=15 Score=31.00 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 654 LEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 654 ~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
+.+..++..++....+++.++.++++|+.
T Consensus 47 e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 47 DVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555555556666665554
No 79
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.78 E-value=12 Score=43.24 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 562 NAKLQSALQEMQLQFKESK 580 (1151)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~ 580 (1151)
...+.+.|++|+.++++++
T Consensus 59 ErDltkrINELKnqLEdls 77 (562)
T 3ghg_A 59 NQDFTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred cCcHHHHHHHHHHHHHHHH
Confidence 3456666677777666663
No 80
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=80.72 E-value=0.23 Score=63.94 Aligned_cols=21 Identities=14% Similarity=-0.111 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 001117 472 RASILIQSHCRKYLARLHYMK 492 (1151)
Q Consensus 472 ~aa~~IQ~~~R~~~~r~~~~~ 492 (1151)
.++..||+.||++..++....
T Consensus 788 ~sl~~IQ~~ir~f~~fr~~ek 808 (995)
T 2ycu_A 788 DSIESVQSFMNAHKEYKKTEK 808 (995)
T ss_dssp HHHHHHHHHHHHHTTHHHHTH
T ss_pred hhHHHHHHHHHHHHHHHHHhc
Confidence 355666666666655555443
No 81
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=80.36 E-value=1.6 Score=56.19 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=34.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 001117 423 EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNE 464 (1151)
Q Consensus 423 ~~AAi~IQ~~~R~~~~rk~y~~~r~a~i~iQs~~Rg~~aR~~ 464 (1151)
..+|+.||+ +|+|.+|++|++++.+++.||..+|+...|+.
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777775 79999999999999999999999888766544
No 82
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=79.65 E-value=4 Score=49.27 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001117 530 KNKLEKQVEELTWRLQ 545 (1151)
Q Consensus 530 ~~~LE~kv~el~~rl~ 545 (1151)
+...|++..+++.++.
T Consensus 330 ~~~~~~~~~~~~~~~~ 345 (575)
T 2i1j_A 330 RERAEKKQQEYQDRLR 345 (575)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3334444444444443
No 83
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=79.28 E-value=14 Score=31.73 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++++.+.+....+|..++..++++++.++.
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444555555555555556655553
No 84
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=79.19 E-value=10 Score=37.02 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=21.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 628 LEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 628 l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
|+.++.+......+......+...++..++..+...+......+.++..|++++.
T Consensus 57 lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 57 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333433333343444444444444444444443
No 85
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=78.73 E-value=20 Score=30.88 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=35.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 629 EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 629 ~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
..++.+++.+..+++.....+...+++.+.+-..++.+++.+-+.+.-.=.|+..+++.
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqg 70 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREG 70 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344444444444444445555566666666667777777777666666677777763
No 86
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=78.34 E-value=9.5 Score=37.17 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+++..|+.+....+....+. +.+..++.....-+...++.++......+..+.+|++.+..+-..+..+.
T Consensus 52 Er~~~lE~qLkeak~~aeea-------drKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDA-------DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444444444444444433 34444444444444444444444444444444444444444444444443
No 87
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=77.84 E-value=39 Score=30.30 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001117 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~ 647 (1151)
+..+...|+..=..+...+.++++..+.+..++.
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~ 42 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444444434444444444444433333333
No 88
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=77.58 E-value=22 Score=30.02 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=35.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 630 KKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 630 ~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
.++.+++.+..+++.....+...+++.+.+-..++.+++.+-+.+.-.=.|+..+++.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~ 64 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDN 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444444445555555555566666666667777777777666666667777663
No 89
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.57 E-value=32 Score=40.18 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 656 AESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 656 ~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
.++++.+++.++..|+.++++++.++++++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455555555555555555555555543
No 90
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.35 E-value=21 Score=33.98 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 533 LEKQVEELTWRLQLEKRMR 551 (1151)
Q Consensus 533 LE~kv~el~~rl~~e~~~~ 551 (1151)
.+.++..|...+..|+..|
T Consensus 44 ~~~e~~~L~~~l~eE~~~R 62 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELR 62 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444555555444333
No 91
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=76.78 E-value=31 Score=33.34 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL 670 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~L 670 (1151)
+..|.++...++..+.+++..+.+-.+.++.+..+...+.-++..++.+...++++...|
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444444444444444444444444444444444444443
No 92
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=75.99 E-value=29 Score=31.42 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++....++..++.|+.++..++.++..++.
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666666666655554
No 93
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=75.95 E-value=29 Score=29.77 Aligned_cols=60 Identities=8% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 619 EKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1151)
Q Consensus 619 ~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le 678 (1151)
.++++.+.....+++.+.....++..-..++..-+..++.....+++.+.-|+.+.++|+
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455444444444444444444444444444444444444444444443
No 94
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=75.68 E-value=52 Score=33.03 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 001117 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLST 692 (1151)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq~l~~s 692 (1151)
+....+.++..++..+.+-|.++...+.....++.++...+.++..|+.++..++.++...+..+..++-.-.+.+
T Consensus 78 iL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS~s 153 (242)
T 3c9i_A 78 ELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKT 153 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCBSS
T ss_pred eeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhhhh
Confidence 3556677777777778777878777777888888888889999999999999999999999999999988765554
No 95
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=75.66 E-value=8 Score=34.87 Aligned_cols=30 Identities=23% Similarity=0.209 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1151)
.+..|.++++.|+.+.+.|++.++.+|.++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554444444433
No 96
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=75.03 E-value=40 Score=30.04 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+++..|+.++..|+.++..+...-. . ....--...+.++..++..+..+...++.++..+..+...++.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~------~---~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGK------S---RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC------C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666677777777766665543210 0 1111123345566666666666777777777777777766654
No 97
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.35 E-value=37 Score=32.15 Aligned_cols=63 Identities=13% Similarity=0.327 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~ 676 (1151)
+.++......|+.+++.++.....++..+.+++.... ..+.+.+..+..++.++..++..+..
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444444444444444444444444444333222 12333344444444444444444433
No 98
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=73.86 E-value=30 Score=42.22 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=79.6
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhcccCccCCcchhHHHhchHHHHHHHhhccccc
Q 001117 942 SSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEY 1021 (1151)
Q Consensus 942 ~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~ 1021 (1151)
++.....+..|...+..|...-+++.+...++.++..=|+..+|+.++++ +-.|..-|.|+.+=+..|-.=+. .+
T Consensus 562 SaEL~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~-nkFS~~Ga~Qf~~D~~~L~~v~~----lp 636 (706)
T 3fhn_A 562 SAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILKL-NKFNQNGLNQFLHDFKSLSSILS----LP 636 (706)
T ss_dssp CGGGHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTTT-SCBCHHHHHHHHHHHHHHHTTSC----CC
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CccCHHHHHHHHHHHHHHHHHhc----CC
Confidence 45678999999999999999989999999999999999999999999994 55677778888887777533222 23
Q ss_pred ccccHHHhHHHHHHHhHHhhcc
Q 001117 1022 AGSSWDELKHIRQAVGFLVIHQ 1043 (1151)
Q Consensus 1022 ~~~~~~~L~~i~Qa~~lLq~~k 1043 (1151)
.+.+-..+..|.+++.||-++.
T Consensus 637 ~~~~~~~~~~L~E~l~LL~L~~ 658 (706)
T 3fhn_A 637 SHATNYKCMSLHELVKILKLKY 658 (706)
T ss_dssp TTCCCHHHHHHHHHHHHHGGGG
T ss_pred CcchhhHHHHHHHHHHHcCCCC
Confidence 3444468999999999999975
No 99
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=73.57 E-value=49 Score=30.40 Aligned_cols=8 Identities=13% Similarity=0.530 Sum_probs=2.9
Q ss_pred HHHHhHHH
Q 001117 549 RMRVDMEE 556 (1151)
Q Consensus 549 ~~~~~le~ 556 (1151)
..+.+++.
T Consensus 27 ~~r~~Le~ 34 (112)
T 1x79_B 27 KDKQELED 34 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 100
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=73.42 E-value=1.1e+02 Score=35.21 Aligned_cols=19 Identities=5% Similarity=0.144 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 566 QSALQEMQLQFKESKEKLM 584 (1151)
Q Consensus 566 ~~~l~~le~~l~~~~~~l~ 584 (1151)
.+-+..++.+++.++..+.
T Consensus 348 ~~~~~~~~~~~~~~n~~~~ 366 (551)
T 2b5u_A 348 VQVYNSRKSELDAANKTLA 366 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhhhhHHH
Confidence 3445555566655555443
No 101
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=72.92 E-value=37 Score=31.28 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++....++..++.|+.++..++.++..++.
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555544443
No 102
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=72.86 E-value=38 Score=30.16 Aligned_cols=11 Identities=27% Similarity=0.144 Sum_probs=3.9
Q ss_pred HHHHHHhHHHH
Q 001117 625 VSSLEKKIDET 635 (1151)
Q Consensus 625 l~~l~~~l~el 635 (1151)
+..|+.+...+
T Consensus 25 VR~LEqqN~~L 35 (93)
T 3s4r_A 25 VRFLEQQNKIL 35 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 103
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.32 E-value=31 Score=31.57 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 656 ~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.+.++..++.++..|++++..++.+++.++.
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555554443
No 104
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=71.87 E-value=28 Score=29.46 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 648 ~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
++..+++++..+...++.++..++....+++..+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444333
No 105
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=71.10 E-value=25 Score=28.61 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
...+++.++..++.+...|+.++..|+.|+..|++.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888888888888888888888764
No 106
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=70.57 E-value=45 Score=28.61 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1151)
Q Consensus 642 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E 680 (1151)
+........+++.+.+.+...|..+++.|++++.+|+.+
T Consensus 36 vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 36 IRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333344445556666666666677777777777666544
No 107
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=70.43 E-value=58 Score=36.20 Aligned_cols=18 Identities=6% Similarity=0.156 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001117 563 AKLQSALQEMQLQFKESK 580 (1151)
Q Consensus 563 ~~L~~~l~~le~~l~~~~ 580 (1151)
..++..+++|...+....
T Consensus 63 r~~~~rIe~L~~~L~~~s 80 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQ 80 (390)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344455555555554443
No 108
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.29 E-value=66 Score=29.48 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq~ 688 (1151)
++++.+|+.+++.|..++.+...|++.++.++
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56688888888888888888888888888754
No 109
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=69.60 E-value=20 Score=31.77 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 665 TAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 665 ~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+.+|+.++.+|..||+.|++
T Consensus 65 ~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544
No 110
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.26 E-value=71 Score=29.27 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 648 ~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
.+..+.+..+..+..+++++..++.++.+++..+...-
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666667777777777777777777776554
No 111
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.48 E-value=41 Score=31.92 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001117 656 AESKIVQLKTAMHRLEEKVSD 676 (1151)
Q Consensus 656 ~~~~~~~l~~~~~~Le~~l~~ 676 (1151)
.+..+..++.++..++..+..
T Consensus 82 ~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 82 IQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 112
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=67.22 E-value=52 Score=28.22 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDM 677 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~L 677 (1151)
++....+.+..+++.+..=+..+..|
T Consensus 48 KLKsTK~El~~Lq~qLe~kd~ei~rL 73 (81)
T 3qh9_A 48 KLKATKAEVAQLQEQVALKDAEIERL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 33333333333333333333333333
No 113
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.50 E-value=17 Score=30.57 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+..+..++.++.+.++.|.+|+.++..++
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555555555555543
No 114
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=65.94 E-value=56 Score=28.97 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 656 ~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
...++..|+.++.+|..+.+.|..|++.-+++
T Consensus 63 ~~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 63 LDARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35677788888899999999999999888775
No 115
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.77 E-value=1.1e+02 Score=35.50 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001117 564 KLQSALQEMQLQFKESKE 581 (1151)
Q Consensus 564 ~L~~~l~~le~~l~~~~~ 581 (1151)
.|++++.+.+..+..+++
T Consensus 401 ~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 345555555544444443
No 116
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=65.41 E-value=87 Score=29.07 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 560 QENAKLQSALQEMQLQFKESKEK 582 (1151)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~~ 582 (1151)
+|+..|+.++..++..++++...
T Consensus 60 KEi~~Lrae~~~~QRn~~K~~~~ 82 (167)
T 4gkw_A 60 KEIGKLRAELGTAQRNLEKADQL 82 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 44455555555555555444443
No 117
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=64.54 E-value=1.1e+02 Score=34.81 Aligned_cols=123 Identities=13% Similarity=0.040 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhcccCccC---CcchhHHHhchHHHHHHHhhcccc
Q 001117 944 HWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCT---FSNGEYVKAGLAELELWCCQAKEE 1020 (1151)
Q Consensus 944 ~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs---~s~G~qIr~nls~Le~W~~~~~~~ 1020 (1151)
.++.|+..+..++.-++ .+++|.+..-++..+...+-..-++.|+. +.-|. -.-|.+|+-.+..|.+-+.+.+.
T Consensus 219 ~v~~i~~ti~dy~~d~~-~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~- 295 (399)
T 2fji_1 219 QAQQIADTLDEYLLDIK-PQMNSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLD- 295 (399)
T ss_dssp HHHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 68899999999998775 56999999999999999999999999987 55555 55688999999999998887652
Q ss_pred cccc----cHHHhHHHHHHHhHHhhcccccCCHH-HHHhccCcCCCHHHHHHHHh
Q 001117 1021 YAGS----SWDELKHIRQAVGFLVIHQKYRISYD-EITNDLCPILSVQQLYRICT 1070 (1151)
Q Consensus 1021 ~~~~----~~~~L~~i~Qa~~lLq~~kk~~~~~~-~i~~~~c~~L~~~Qi~kil~ 1070 (1151)
..+. +...+..|-+.+. |-+++-...-.. .......|-+++..+.+||.
T Consensus 296 ~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~ 349 (399)
T 2fji_1 296 GNESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILK 349 (399)
T ss_dssp TCTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 1111 4577788888888 776520222111 22256799999999999995
No 118
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=63.71 E-value=78 Score=27.89 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
.++.+++|+.+|..|..+++...
T Consensus 65 qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 65 QQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665554
No 119
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.45 E-value=1.8e+02 Score=33.64 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
...+..|+..+..+..+|..|+..+..+..
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777777765543
No 120
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=62.61 E-value=59 Score=26.95 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001117 670 LEEKVSDMETENQILR 685 (1151)
Q Consensus 670 Le~~l~~Le~E~~~lr 685 (1151)
|.+++-.+.-|+..|+
T Consensus 51 LNDEiislNIENNlL~ 66 (75)
T 3a7o_A 51 LNDELISGTIENNVLQ 66 (75)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHHH
Confidence 3333333444444443
No 121
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=61.96 E-value=2.3e+02 Score=32.74 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=8.6
Q ss_pred chhhHHHhHHHHHHHH
Q 001117 811 HMAYWLSNTSTLLFLL 826 (1151)
Q Consensus 811 ~l~fWLsN~~~Ll~~l 826 (1151)
..-|||.| +-+|.|
T Consensus 293 ~gEfWLGl--e~ih~L 306 (464)
T 1m1j_B 293 PGEYWLGN--DKISQL 306 (464)
T ss_dssp ECSEECCH--HHHHHH
T ss_pred ceeeEecc--cceeec
Confidence 45788887 334554
No 122
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=61.78 E-value=40 Score=28.99 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+..+.+..+..|+.+...|+.+|..|+.|+..|++
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888899999999999999998886
No 123
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=61.26 E-value=6 Score=49.46 Aligned_cols=29 Identities=31% Similarity=0.546 Sum_probs=21.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 001117 469 RQTRASILIQSHCRKYLARLHYMKLKKAA 497 (1151)
Q Consensus 469 r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~ 497 (1151)
+...+++.||++||||++|++|++++.++
T Consensus 766 ~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 766 KLRAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34557888888888888888888776654
No 124
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=60.30 E-value=55 Score=26.77 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
+.+++.++..|+.+...|..++..|+.++..++.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777777777776654
No 125
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=60.01 E-value=87 Score=28.51 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 650 ~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
..++......+..+..++..++.++..++.++.
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555666666666666666665554
No 126
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=59.87 E-value=26 Score=29.52 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVS 675 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~ 675 (1151)
+.+.++.+|+.++.
T Consensus 51 ekd~eI~~LqseLD 64 (72)
T 3nmd_A 51 QKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333433333
No 127
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=59.48 E-value=2e+02 Score=32.78 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 658 SKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 658 ~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
..+..|+..++++..+|++||..+....
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666665443
No 128
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=59.46 E-value=45 Score=29.29 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq~ 688 (1151)
..+.+..+..|+.+...|+.+|..|+.|+..|+.--
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888888999988888743
No 129
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=58.89 E-value=64 Score=28.98 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFE 640 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~ 640 (1151)
+.+++|++|+...|+++...+.++.+.++..+
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E 66 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVE 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777777777777777777776665443
No 130
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=58.57 E-value=86 Score=26.88 Aligned_cols=14 Identities=43% Similarity=0.423 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 001117 616 SENEKLKTLVSSLE 629 (1151)
Q Consensus 616 ~e~~kLe~~l~~l~ 629 (1151)
.|+..|+-.+.+++
T Consensus 26 qEi~~Lr~kv~elE 39 (81)
T 3qh9_A 26 QELRHLKIKVEELE 39 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 131
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=58.49 E-value=1e+02 Score=27.63 Aligned_cols=29 Identities=10% Similarity=0.144 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
.+..+..+..+++++..++.++.+++..+
T Consensus 74 ~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 74 LETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555544443
No 132
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=58.35 E-value=7.5 Score=40.97 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 646 ~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..++..++..+..+...|...+++++.++..|++|++.+++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455556666677777888899999999999999999987
No 133
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=57.49 E-value=40 Score=27.65 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+++.++..|+.+..+|+.++..|+.|+..|++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777777777777664
No 134
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=57.17 E-value=1.5e+02 Score=29.06 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 001117 618 NEKLKTLVSSLEKKIDETEKKFE 640 (1151)
Q Consensus 618 ~~kLe~~l~~l~~~l~ele~~~~ 640 (1151)
...+++.+++..+.++.....++
T Consensus 87 ea~lEqkVaeq~e~Ve~e~q~Le 109 (169)
T 3k29_A 87 LSEEEEKVNKQKENVLAASKELE 109 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333
No 135
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=57.16 E-value=2.2e+02 Score=32.80 Aligned_cols=28 Identities=7% Similarity=0.221 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 659 ~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
...+.+.+++.-+..+.+...++.+++.
T Consensus 81 ~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 81 DLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555443
No 136
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.01 E-value=2e+02 Score=31.95 Aligned_cols=15 Identities=13% Similarity=0.218 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 001117 531 NKLEKQVEELTWRLQ 545 (1151)
Q Consensus 531 ~~LE~kv~el~~rl~ 545 (1151)
..++.+|.+|+.+|.
T Consensus 63 r~~~~rIe~L~~~L~ 77 (390)
T 1deq_A 63 QDFTSRINKLRDSLF 77 (390)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344455555554444
No 137
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.93 E-value=1.3e+02 Score=28.28 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 649 l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
+..+++.++..+..+++.+..+++++..++++++.+.++
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445555566666666666666666666666665543
No 138
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=56.03 E-value=1e+02 Score=26.76 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 523 TGALQAAKNKLEKQVEELTWRLQ 545 (1151)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~rl~ 545 (1151)
+..++..+..||+.+.+++.+..
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~ 25 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFA 25 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677778888777766655
No 139
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=55.61 E-value=1e+02 Score=26.95 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 523 TGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKL 583 (1151)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~rl~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l 583 (1151)
++.|+..+..||+.+.+++.+.. .+.+.++..+..++.++..+..++
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~--------------~~l~~~q~~i~~lE~el~~~r~e~ 51 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLA--------------RERDTSRRLLAEKEREMAEMRARM 51 (86)
T ss_dssp -------CTTHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667777777665544 233344555555555555544443
No 140
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.61 E-value=24 Score=29.66 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 650 ~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+.++.+++.....+..++..|...+..|..|+..+
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334444444445566666666666666666543
No 141
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=54.77 E-value=48 Score=29.84 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKV 674 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l 674 (1151)
..|+.+++.|++++
T Consensus 78 e~Lq~E~erLr~~v 91 (100)
T 1go4_E 78 SQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 142
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=54.34 E-value=5.4 Score=39.71 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=19.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHh
Q 001117 421 RREASCLRIQRDLRMYLAKKAYKD 444 (1151)
Q Consensus 421 r~~~AAi~IQ~~~R~~~~rk~y~~ 444 (1151)
++..||++||++||.|+.|+.+.+
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 455799999999999988776654
No 143
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=54.03 E-value=70 Score=27.84 Aligned_cols=33 Identities=3% Similarity=0.158 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 654 ~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
-++...+..++.++.+|+..++++.-+++.+++
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344555555666666666666666666655544
No 144
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=53.52 E-value=1.2e+02 Score=27.17 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 522 ETGALQAAKNKLEKQVEELTWRLQLEKR--------MRVDMEEAKTQENAKLQSALQEMQLQFKESK 580 (1151)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~rl~~e~~--------~~~~le~~~~~e~~~L~~~l~~le~~l~~~~ 580 (1151)
.++.|++.....|.++...+++|.++++ .+..--.+++.+++.++..+.+++.++....
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888888888776543 2333334555667777777777777666543
No 145
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=53.22 E-value=1.4e+02 Score=27.82 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.+..|..++..|+.+++.+.. +.......+..++..++..+..-...........+.|+.+++.++.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~----------E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKT----------ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544444321 2222333344444444444444444455555556666666666654
No 146
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=53.22 E-value=36 Score=27.74 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.+.+++.++..|+.+...|..++..|+.|+..|++
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777777777766654
No 147
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=52.21 E-value=1.8e+02 Score=33.18 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 659 ~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.+..|+..+..++.+|+.|+..+..+..
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555554443
No 148
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=49.84 E-value=2.5e+02 Score=31.89 Aligned_cols=14 Identities=29% Similarity=0.807 Sum_probs=7.9
Q ss_pred chhhHHHhHHHHHHHH
Q 001117 811 HMAYWLSNTSTLLFLL 826 (1151)
Q Consensus 811 ~l~fWLsN~~~Ll~~l 826 (1151)
..-|||.| +-+|.|
T Consensus 223 ~gEfWLGl--e~ih~L 236 (409)
T 1m1j_C 223 TTEFWLGN--EKIHLI 236 (409)
T ss_dssp CCCEECCH--HHHHHH
T ss_pred CccEEeec--cceeec
Confidence 45677776 334444
No 149
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=49.77 E-value=15 Score=36.60 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=18.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHh
Q 001117 469 RQTRASILIQSHCRKYLARLHYMK 492 (1151)
Q Consensus 469 r~~~aa~~IQ~~~R~~~~r~~~~~ 492 (1151)
++..||..||++||.|+.|+.+..
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 456688899999999887766644
No 150
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=49.16 E-value=44 Score=28.72 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~ 681 (1151)
..+.++..|+.++..|.+.+
T Consensus 39 ~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 39 DARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 151
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=48.44 E-value=42 Score=39.27 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+++-.|..+..+++.++++|+.+..++.+++.++++..+ ...++.++...+.++++.|++++.++++++..+
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~----~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKE----DAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666655555544333221 122344455666777777777777777776543
No 152
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=48.01 E-value=65 Score=37.90 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE----RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~----l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+.+-.|..+..++..++++++.+..++.+++.++.+.... ......++.++...+.++++.|++++.++++++..+
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666555555555443322210 001222344455566666666666666666666543
No 153
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=47.49 E-value=1.6e+02 Score=26.53 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~ 679 (1151)
+....--.++.|-.+-..+.=+++-+++.+++.+....++.....+....+..+......|+.++..++.
T Consensus 10 KyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 10 KYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444554444455555555555555555544444444444444444444444444444443333
No 154
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.03 E-value=1.9e+02 Score=27.24 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001117 524 GALQAAKNKLEKQVEELTWRL 544 (1151)
Q Consensus 524 ~~L~~~~~~LE~kv~el~~rl 544 (1151)
..++..+..||..+.+++.+.
T Consensus 55 ~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 55 QSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 344444455555555544433
No 155
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=46.83 E-value=1.7e+02 Score=26.65 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~ 681 (1151)
+..++.+|++++..|..++
T Consensus 88 l~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 156
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.10 E-value=1.9e+02 Score=27.08 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 562 NAKLQSALQEMQLQFKESKEKL 583 (1151)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~~~l 583 (1151)
...++..+..++.++..+..++
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3344445555555555444433
No 157
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=45.28 E-value=1.3e+02 Score=26.95 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ-----ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 617 e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~-----l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
-+.+|+..++++++.++......+.+.+....-... ....+.++.+...++..|+..+..++.-+..+.
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666665555544444433221110 011233444444444444444444444444443
No 158
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=45.12 E-value=1e+02 Score=29.66 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCcCCCCCCcccHHHHHHHHHHHHHHHHhCCCCHHHH
Q 001117 890 QQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLV 969 (1151)
Q Consensus 890 q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~ 969 (1151)
+.....+.+||..|+.-+..++...+.. -... .+.+++.++.|.+.+..+|.+|.. .+|+.-+
T Consensus 15 rdy~eH~~eI~~KLv~Im~~r~~~~l~~------Wd~k----------~pvpS~~m~tl~Ke~~kLH~~Ls~-~LP~~~v 77 (141)
T 3n1e_A 15 KDYHDHIAEISAKLVAIMDSLFDKLLSK------YEVK----------APVPSPCFRNICKQMTKMHEAIFD-LLPEEQT 77 (141)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTT------CCCC----------SSSSCHHHHHHHHHHHHHHHHHTT-TSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccC----------CCCCCHHHHHHHHHHHHHHHHHHh-hCCHHHH
Confidence 4446778999999988888888766531 1100 023456899999999999999974 6899999
Q ss_pred HHHHHHHHHhHHHHH
Q 001117 970 QKIFTQTFSYINVQL 984 (1151)
Q Consensus 970 ~Q~f~Qlf~~ina~l 984 (1151)
.-+|..+|.-.+-.+
T Consensus 78 ~~Im~~Vf~~fk~~l 92 (141)
T 3n1e_A 78 QMLFLRINASYKLHL 92 (141)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999987655443
No 159
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=43.80 E-value=15 Score=30.62 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 659 KIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 659 ~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
+++-|+++|.+|++++..||.||..||+-
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34568889999999999999999999983
No 160
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=43.46 E-value=45 Score=38.83 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+.+-.|..+..++..++++|+.+..++.+++..+.+..+ ...++.++...+.++++.|++++.++++++..+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE----PVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666655555555544322211 122344455566677777777777777666554
No 161
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=43.26 E-value=50 Score=37.72 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 001117 946 QSIIDSLNTLLSTL 959 (1151)
Q Consensus 946 ~~il~~L~~~~~~l 959 (1151)
+.-|..|..+...|
T Consensus 324 NkSL~aLg~vI~aL 337 (403)
T 4etp_A 324 NKSLSALGDVIHAL 337 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 162
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=42.62 E-value=2.3e+02 Score=29.11 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETE 636 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1151)
+..|.+++..|+...+.+.+++++.-
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444433
No 163
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=42.58 E-value=29 Score=39.88 Aligned_cols=16 Identities=13% Similarity=0.218 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001117 945 WQSIIDSLNTLLSTLK 960 (1151)
Q Consensus 945 ~~~il~~L~~~~~~l~ 960 (1151)
++.-|..|..+...|.
T Consensus 311 INkSL~aLg~vI~aL~ 326 (412)
T 3u06_A 311 INRSLSELTNVILALL 326 (412)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHh
Confidence 3444445555544443
No 164
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=42.57 E-value=1.7e+02 Score=25.39 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 658 SKIVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 658 ~~~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
..+...++...-|+-++.+...|.+.
T Consensus 74 ~RLsKtEKDkAiLELkLaE~~Dek~r 99 (101)
T 1d7m_A 74 ARLAKTEKDRAILELKLAEAIDEKSK 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhh
Confidence 33333444444444444444444443
No 165
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=42.21 E-value=1.6e+02 Score=25.11 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1151)
+.+|..++...+.++...+.++.+.++..
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~ 35 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAV 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666555443
No 166
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=41.92 E-value=32 Score=26.59 Aligned_cols=8 Identities=63% Similarity=0.862 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001117 634 ETEKKFEE 641 (1151)
Q Consensus 634 ele~~~~e 641 (1151)
++.++.++
T Consensus 29 elkkkwee 36 (67)
T 1lq7_A 29 ELKKKWEE 36 (67)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 167
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=41.05 E-value=1.1e+02 Score=24.06 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
|.+.+++..++|..|.++++.
T Consensus 28 L~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 28 LMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433
No 168
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=39.61 E-value=1.2e+02 Score=26.58 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHhHH
Q 001117 620 KLKTLVSSLEKKID 633 (1151)
Q Consensus 620 kLe~~l~~l~~~l~ 633 (1151)
.|+..+..|+.++.
T Consensus 26 ~le~~Ie~LE~~i~ 39 (89)
T 2lw1_A 26 QLPQLLEDLEAKLE 39 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 169
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=39.53 E-value=3.7e+02 Score=28.51 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHHHHHhHhhhcccCccCCcchhHHHhchHHHHHHHhhcccccccc
Q 001117 945 WQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGS 1024 (1151)
Q Consensus 945 ~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~ 1024 (1151)
+...+.-++.++.-.+.. +.+.....+++-+-.++...+=..++. .-++--=|+++--=++.|-.++.+.+ ...
T Consensus 127 ~~~F~~~w~~ll~p~k~~-Lt~~~y~~Ll~~~~~~la~~lE~~i~~--~~fn~lGal~LdrDvr~li~~~~~~~---~~~ 200 (263)
T 3hr0_A 127 VQQFILNLEQQMAEFKAS-LSPVIYDSLTGLMTSLVAVELEKVVLK--STFNRLGGLQFDKELRSLIAYLTTVT---TWT 200 (263)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHHHHHHHHHTTS---CTT
T ss_pred HHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHh--CCcCchhHHHHHHHHHHHHHHHHhcc---chh
Confidence 445555555555544442 234445555555555555544444443 33666668888888888888887644 256
Q ss_pred cHHHhHHHHHHHhHHhhcccccCCHHHHH-------hccCcCCCHHHHHHHHhc
Q 001117 1025 SWDELKHIRQAVGFLVIHQKYRISYDEIT-------NDLCPILSVQQLYRICTL 1071 (1151)
Q Consensus 1025 ~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~-------~~~c~~L~~~Qi~kil~~ 1071 (1151)
.++.+..+.|.+-+|-+. +.+++. .++=|.|||..+.+++..
T Consensus 201 lRekF~RL~QI~~lLnle-----~~eev~d~~~~~~~~~~W~Ls~~E~r~il~l 249 (263)
T 3hr0_A 201 IRDKFARLSQMATILNLE-----RVTEILDYWGPNSGPLTWRLTPAEVRQVLAL 249 (263)
T ss_dssp HHHHTHHHHHHHHHHTCS-----SGGGGGGTSGGGGTTCCCCSCHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcCC-----ChHHHHHHhcccCCCccccCCHHHHHHHHHh
Confidence 889999999999999886 233331 225579999999999875
No 170
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=39.41 E-value=1.1e+02 Score=26.49 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~ 682 (1151)
+.+++++|++.|.+.+..+.
T Consensus 56 h~~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 56 HAKEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 171
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=39.36 E-value=1.1e+02 Score=22.50 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 001117 669 RLEEKVSDME 678 (1151)
Q Consensus 669 ~Le~~l~~Le 678 (1151)
.|++++.+|+
T Consensus 35 nlrdeiarle 44 (52)
T 3he5_B 35 NLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 172
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.34 E-value=1e+02 Score=26.67 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++-.+..+|...+..+++++..++++|+.++.
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666666666666666554
No 173
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.70 E-value=1.4e+02 Score=26.67 Aligned_cols=24 Identities=17% Similarity=-0.068 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 522 ETGALQAAKNKLEKQVEELTWRLQ 545 (1151)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~rl~ 545 (1151)
.+..|+..+..||+.+.+++.+..
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~ 36 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLA 36 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777777766555
No 174
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=38.36 E-value=1.3e+02 Score=35.21 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~ 642 (1151)
+++-+|..+..+++.++++++.+..+..+++.++
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666555555555443
No 175
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.23 E-value=1.7e+02 Score=24.53 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 559 TQENAKLQSALQEMQLQFK 577 (1151)
Q Consensus 559 ~~e~~~L~~~l~~le~~l~ 577 (1151)
..|+..|...+..|..++.
T Consensus 49 ~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 49 TLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555443
No 176
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=38.19 E-value=1.3e+02 Score=23.26 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMET 679 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~ 679 (1151)
.|++++++--..+.+||.
T Consensus 21 hLrrEL~dNS~~lskLE~ 38 (54)
T 1deb_A 21 NLRQELEDNSNHLTKLET 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHh
Confidence 333333333333333333
No 177
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=38.03 E-value=1.7e+02 Score=26.58 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1151)
+++|..|+...+.+|.-.+.++.+.++..
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~ 52 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQY 52 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777777777776666544
No 178
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=37.88 E-value=91 Score=26.92 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
++-.+..+|.+.+..+++++..|+++|..|+.
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555566666666666655543
No 179
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.56 E-value=1.6e+02 Score=25.85 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 648 ~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
++..++..++.+...|+.++..|+.++..|..-+..+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3444455555555566666666666666665554433
No 180
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=37.29 E-value=2.1e+02 Score=25.42 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001117 611 VEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1151)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~ele~~~ 639 (1151)
+.+|..++...+.+|...+.++.+.++..
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~ 35 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAV 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666667777777666666666555443
No 181
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=37.17 E-value=99 Score=29.57 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.++..+..++.++..|+.+...+..
T Consensus 84 ~~ea~la~l~~~~~~LeAE~aKLeE 108 (146)
T 2xnx_M 84 NAKLELDQLSSEKEQLTIEKAKLEE 108 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444444444555555554443
No 182
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.85 E-value=90 Score=31.24 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETE 636 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1151)
.++.|..|+..|.++++....+++.++
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~ 47 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQ 47 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444443333333
No 183
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.77 E-value=1.7e+02 Score=23.63 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1151)
Q Consensus 648 ~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~ 679 (1151)
++..++..++.....|..++..|++++..|+.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555543
No 184
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.82 E-value=70 Score=22.86 Aligned_cols=26 Identities=42% Similarity=0.389 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1151)
++++++|..++..|+.++..|++-+.
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 45666777777777776666665444
No 185
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=35.48 E-value=3.1e+02 Score=27.62 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=36.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 622 KTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 622 e~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
+.++++-+.++...+..+..++.+....+.++..++.++..++..+...+..|..++.+--
T Consensus 90 ~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyV 150 (242)
T 3c9i_A 90 RIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYV 150 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBC
T ss_pred hcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhh
Confidence 3333444444444444444444455555556666667777777788888888888777763
No 186
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.29 E-value=50 Score=23.57 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 665 TAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 665 ~~~~~Le~~l~~Le~E~~~ 683 (1151)
.++++|-.+...|+.|...
T Consensus 8 ~KVEeLl~~~~~Le~eV~R 26 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVAR 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3333333333333333333
No 187
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=35.02 E-value=4.8e+02 Score=29.56 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.|+..+.....+|..|++.+..+..
T Consensus 109 ~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 109 YLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555544
No 188
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=34.63 E-value=3.2e+02 Score=26.36 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 001117 564 KLQSALQEMQL 574 (1151)
Q Consensus 564 ~L~~~l~~le~ 574 (1151)
.|+..+.+|+.
T Consensus 54 eL~~~~~~Le~ 64 (155)
T 2oto_A 54 ELEKAKQALED 64 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33433444433
No 189
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.53 E-value=3.9e+02 Score=31.99 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=5.1
Q ss_pred cccccccCCc
Q 001117 69 IGVLDIYGFE 78 (1151)
Q Consensus 69 IgvLDi~GFE 78 (1151)
|-++|++||-
T Consensus 93 i~LiDTpGi~ 102 (592)
T 1f5n_A 93 LVLLDTEGLG 102 (592)
T ss_dssp EEEEEECCBC
T ss_pred EEEecCCCcC
Confidence 3455555554
No 190
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=34.52 E-value=2.7e+02 Score=25.37 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 524 GALQAAKNKLEKQVEELTWRLQLEKR--------MRVDMEEAKTQENAKLQSALQEMQLQFKESK 580 (1151)
Q Consensus 524 ~~L~~~~~~LE~kv~el~~rl~~e~~--------~~~~le~~~~~e~~~L~~~l~~le~~l~~~~ 580 (1151)
+.|++.....|.++.-.+++|.++++ .+..--..+..++..|+..+.+++.++....
T Consensus 25 eeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 25 EELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666777777777777775542 2333333455666777777777776666543
No 191
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.34 E-value=57 Score=25.81 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKK 638 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~ 638 (1151)
..++.|..|++.|+..+..|.++++++..+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666665555555555443
No 192
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.90 E-value=2.3e+02 Score=24.50 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 647 ~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
.++..++++++.++..|+..++++.-++..+.+.....-
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555444433
No 193
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.71 E-value=1.8e+02 Score=23.13 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKV 674 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l 674 (1151)
...+.+....+.+..++.++
T Consensus 37 ~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 37 EIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333
No 194
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.48 E-value=64 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..|+.++.+|+.++..|.++++.++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555544443
No 195
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=33.25 E-value=6.2e+02 Score=29.22 Aligned_cols=22 Identities=5% Similarity=0.184 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSD 676 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~ 676 (1151)
+-+.++...+.+....+..+.+
T Consensus 84 eY~~kl~aYe~~~~~~~k~lae 105 (497)
T 3iox_A 84 DYPVKLKAYEDEQTSIKAALAE 105 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 196
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=32.86 E-value=2.9e+02 Score=28.39 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=23.8
Q ss_pred CCeeeEecCCCCCCCCCcccccchhhhhhccchhhhHHHHhcCCCCccChHHHHH
Q 001117 263 EPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1151)
Q Consensus 263 ~~hfirCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ 317 (1151)
..+||+|-..+ ..|..|+-...-.+.-+.|.+..-.|...-=+..+++++|+.
T Consensus 16 ~~~~l~~~w~~--~~~~~f~l~~TdG~~~w~g~v~~~~i~~rAk~~~~~~eey~~ 68 (213)
T 1ik9_A 16 ITHFLQVSWEK--TLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVG 68 (213)
T ss_dssp EEEEEEEEESS--CGGGEEEEEEECSSCEEEEEEEHHHHHHHHHHTTCCHHHHHH
T ss_pred CeEEEEEEEcC--CCCCceEEEEecCCCceEEEecHHHHHHHHHhcCCCHHHHHH
Confidence 34566665443 224444444444444444544433332222234555555553
No 197
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=32.38 E-value=83 Score=22.07 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+|+.++++|-.+...|+.|...++
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444443
No 198
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=32.30 E-value=1.3e+02 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001117 522 ETGALQAAKNKLEKQVEELTW 542 (1151)
Q Consensus 522 ~~~~L~~~~~~LE~kv~el~~ 542 (1151)
.+.+|++.+..|-.++.+|+.
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~ 32 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEF 32 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555543
No 199
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=32.14 E-value=1e+02 Score=24.26 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.+.+-++..+..|++++.+|++++..-++......+
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~ 40 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISE 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344556666667777777777666655555544443
No 200
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.06 E-value=96 Score=35.38 Aligned_cols=9 Identities=44% Similarity=0.482 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 001117 677 METENQILR 685 (1151)
Q Consensus 677 Le~E~~~lr 685 (1151)
|-.++..++
T Consensus 50 l~n~~~elk 58 (403)
T 4etp_A 50 LHNELQELR 58 (403)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 333344443
No 201
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.99 E-value=1.8e+02 Score=23.56 Aligned_cols=6 Identities=50% Similarity=0.828 Sum_probs=2.3
Q ss_pred HHHHHH
Q 001117 533 LEKQVE 538 (1151)
Q Consensus 533 LE~kv~ 538 (1151)
||.++.
T Consensus 27 Le~~v~ 32 (62)
T 1jnm_A 27 LEEKVK 32 (62)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 202
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=31.89 E-value=1.5e+02 Score=22.78 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
|-..+.+|+....+++.|++.+
T Consensus 16 L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 16 LATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHH
Confidence 3334444444444444444444
No 203
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=31.87 E-value=77 Score=21.00 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 001117 614 LTSENEKLKTLVSSLEKKIDET 635 (1151)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~el 635 (1151)
|++.-..|+..++.++++++.+
T Consensus 6 lekkcaalesklqalekkleal 27 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 204
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=31.81 E-value=3.2e+02 Score=25.38 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSD 676 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~ 676 (1151)
.+|+++++..+..|..
T Consensus 85 keLd~~ik~qekiIdn 100 (119)
T 3etw_A 85 KKLEAEMEQQKAVISD 100 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 205
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=31.59 E-value=1e+02 Score=20.87 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001117 660 IVQLKTAMHRLEEKVSDMETE 680 (1151)
Q Consensus 660 ~~~l~~~~~~Le~~l~~Le~E 680 (1151)
++.++.-+++|++++.+||+-
T Consensus 8 ~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 8 VRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555443
No 206
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=31.55 E-value=2.2e+02 Score=24.31 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 649 RLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1151)
Q Consensus 649 l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le 678 (1151)
+..++..++.+...|+.++..|+.++..|.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555443
No 207
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=31.01 E-value=75 Score=22.33 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+|+.++++|-.+..+|+.|...|+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444555555555555554444
No 208
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.85 E-value=1.2e+02 Score=30.29 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQ 682 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~ 682 (1151)
+++++.+.+++.+|+.++.....+..
T Consensus 112 eakI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777776666555443
No 209
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.66 E-value=2.7e+02 Score=27.91 Aligned_cols=11 Identities=0% Similarity=0.474 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 001117 790 SVFDRLIQMIG 800 (1151)
Q Consensus 790 ~ll~~ii~~i~ 800 (1151)
.|.++++.++.
T Consensus 170 qFY~Kv~kaLn 180 (190)
T 4emc_A 170 QFYNKIAKSLN 180 (190)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhc
Confidence 44445544443
No 210
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=30.37 E-value=1.4e+02 Score=38.49 Aligned_cols=56 Identities=13% Similarity=-0.048 Sum_probs=33.9
Q ss_pred hhhhchhhhhHhhhhHhhhhcchhhccc----cccchhhhhHHHHHHHHHHHHHHHhhhh
Q 001117 392 KNYIMLRRSAIHIQAACRGQLARTVYES----MRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1151)
Q Consensus 392 k~y~~~r~a~i~IQ~~~Rg~lar~~~~~----~r~~~AAi~IQ~~~R~~~~rk~y~~~r~ 447 (1151)
.+-.++..+++.||...|+...++.++. ++.......++...+.+..++.|....+
T Consensus 757 ~R~~~l~~~~~~iQY~~~a~~L~~WIr~kqa~l~~r~~~~sl~~IQ~ll~~f~~fk~~~k 816 (1010)
T 1g8x_A 757 AREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEK 816 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccC
Confidence 3334556778888876666544332221 2223334467778888888888887643
No 211
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=29.81 E-value=1.9e+02 Score=22.26 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 645 ISEERLKQALEAESKIVQLKTAMHRL 670 (1151)
Q Consensus 645 ~~~~l~~~l~~~~~~~~~l~~~~~~L 670 (1151)
....+..++.+++..+...+.++.+|
T Consensus 12 ~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 12 INIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 33344444444444444444444444
No 212
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.68 E-value=2.8e+02 Score=24.11 Aligned_cols=27 Identities=4% Similarity=0.070 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDE 634 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~e 634 (1151)
.+++..+..+...++..++.+..+=.+
T Consensus 55 ~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 55 HEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666655555555555444333
No 213
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=29.64 E-value=3.1e+02 Score=26.32 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 648 ~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
-+..+++.++..+..+++.+..+++++..++..+..+.+
T Consensus 102 ~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 102 FLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666677777777777777777777777665
No 214
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.59 E-value=91 Score=22.02 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
|+.++++|-.+-++|+.|...|
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHH
Confidence 3334444444444444444443
No 215
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.58 E-value=1.9e+02 Score=25.13 Aligned_cols=23 Identities=13% Similarity=0.380 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 656 AESKIVQLKTAMHRLEEKVSDME 678 (1151)
Q Consensus 656 ~~~~~~~l~~~~~~Le~~l~~Le 678 (1151)
-.+++..|++.+.+.+..|.+|+
T Consensus 56 h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 56 HAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444545554444
No 216
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=29.38 E-value=3.1e+02 Score=24.51 Aligned_cols=29 Identities=31% Similarity=0.309 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKIDETE 636 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1151)
+.++.+....+.+|+.++..++.-+.+++
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555443
No 217
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=29.20 E-value=3.3e+02 Score=24.75 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 520 ARETGALQAAKNKLEKQVEELTWRL 544 (1151)
Q Consensus 520 a~~~~~L~~~~~~LE~kv~el~~rl 544 (1151)
.+.+...+....+++....+|+.++
T Consensus 14 ~KqL~~~~q~~~e~e~~k~eL~~~~ 38 (107)
T 2no2_A 14 TKQVSMARQAQVDLEREKKELEDSL 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 218
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.07 E-value=90 Score=22.32 Aligned_cols=25 Identities=48% Similarity=0.420 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKI 632 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l 632 (1151)
++++++|..++..|+.++..|++-+
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566666666666666666655444
No 219
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.58 E-value=40 Score=35.52 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
.++.+++.++..+..+++.|.+.+.+++.|+..++.+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777777788887777774
No 220
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.46 E-value=6.7e+02 Score=29.89 Aligned_cols=13 Identities=38% Similarity=0.243 Sum_probs=10.1
Q ss_pred eEEeccchhhhhc
Q 001117 193 VTYQTELFLDKNK 205 (1151)
Q Consensus 193 V~Y~~~~fl~kN~ 205 (1151)
+-.|+.|+.+..+
T Consensus 94 ~LiDTpGi~~~~~ 106 (592)
T 1f5n_A 94 VLLDTEGLGDVEK 106 (592)
T ss_dssp EEEEECCBCCGGG
T ss_pred EEecCCCcCcccc
Confidence 5678999987766
No 221
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=27.99 E-value=3.3e+02 Score=24.37 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 652 QALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
++.+.......-++.+.+++..|..|+.|+
T Consensus 65 rLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 65 RLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555556666666666666655
No 222
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=27.70 E-value=2.9e+02 Score=23.61 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 523 TGALQAAKNKLEKQVEELTWRLQLEKR--------MRVDMEEAKTQENAKLQSALQEMQLQFKESK 580 (1151)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~rl~~e~~--------~~~~le~~~~~e~~~L~~~l~~le~~l~~~~ 580 (1151)
+..|++.....|.++....++|.++++ .+..--..+..++..|+..+.+++.++....
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777775542 2333333455666777777777776666543
No 223
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=27.39 E-value=1.4e+02 Score=25.60 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 660 IVQLKTAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 660 ~~~l~~~~~~Le~~l~~Le~E~~~ 683 (1151)
..+|..++..++++|..|++||..
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~ 59 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKD 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 224
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.36 E-value=1.2e+02 Score=33.26 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 658 SKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 658 ~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.++..|+..++.++.+|.+|+..+..++.
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555554444443
No 225
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=27.34 E-value=3.3e+02 Score=24.16 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 523 TGALQAAKNKLEKQVEELTWRLQLEKR--------MRVDMEEAKTQENAKLQSALQEMQLQFKESKE 581 (1151)
Q Consensus 523 ~~~L~~~~~~LE~kv~el~~rl~~e~~--------~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~ 581 (1151)
+..|++.....|.++.-..++|..+++ .+..--..+..++..|+..+.+++.++.....
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677777777777777775542 23333345556777777777777777666543
No 226
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=27.23 E-value=1.7e+02 Score=20.89 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+|..++..-.++|..|++||..|+
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444445555555666665554
No 227
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.91 E-value=2.9e+02 Score=24.57 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEK 630 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~ 630 (1151)
..|.+.+..|+..+.+++.
T Consensus 15 ~~Lq~~~~~LE~~l~e~E~ 33 (95)
T 3mov_A 15 FQGQKESRACLERIQELED 33 (95)
T ss_dssp ---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 228
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.82 E-value=1.2e+02 Score=21.32 Aligned_cols=8 Identities=13% Similarity=-0.080 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001117 674 VSDMETEN 681 (1151)
Q Consensus 674 l~~Le~E~ 681 (1151)
-..|+.|.
T Consensus 16 ~~~Le~EV 23 (33)
T 3c3g_A 16 XYHXENXL 23 (33)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 33333333
No 229
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.61 E-value=55 Score=21.20 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
.+..+..+|+.++..|+-|+..+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 34445555555555555555444
No 230
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.52 E-value=1.5e+02 Score=33.97 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+.+-.|..+..++..++++++.+..++.+++.. +.. ....++.++...+.++++.+++++.++++++..+
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~--~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK--APP----EEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--SCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666665555554432 100 1122334455566667777777777766666544
No 231
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=26.47 E-value=1.3e+02 Score=31.39 Aligned_cols=6 Identities=0% Similarity=0.340 Sum_probs=2.5
Q ss_pred HHHHhc
Q 001117 752 ALINCV 757 (1151)
Q Consensus 752 ~l~~~i 757 (1151)
.+++..
T Consensus 126 rILkaa 131 (233)
T 2yko_A 126 KMLRAA 131 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 232
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.44 E-value=1.2e+02 Score=21.38 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 665 TAMHRLEEKVSDMETENQI 683 (1151)
Q Consensus 665 ~~~~~Le~~l~~Le~E~~~ 683 (1151)
.++++|-.+...|+.|...
T Consensus 8 dKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 8 XKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHH
Confidence 3333333333333333333
No 233
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.21 E-value=2.9e+02 Score=23.15 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 657 ESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 657 ~~~~~~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
...+...+.++.+|+-.++.|+.|++.++
T Consensus 48 ~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 48 NDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445566677777777777777777654
No 234
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.08 E-value=80 Score=22.22 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001117 663 LKTAMHRLEEKVSDM 677 (1151)
Q Consensus 663 l~~~~~~Le~~l~~L 677 (1151)
|-.+..+|+.++.+|
T Consensus 12 Ll~~n~~Le~EV~RL 26 (33)
T 3m48_A 12 LLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH
Confidence 333333333333333
No 235
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.70 E-value=1.6e+02 Score=32.48 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=4.9
Q ss_pred chhhHHHh
Q 001117 811 HMAYWLSN 818 (1151)
Q Consensus 811 ~l~fWLsN 818 (1151)
..-|||.|
T Consensus 145 ~gEfWLGl 152 (323)
T 1lwu_C 145 TTEFWLGN 152 (323)
T ss_dssp CSCEECCH
T ss_pred CccEEecc
Confidence 45677666
No 236
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.37 E-value=81 Score=21.36 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 001117 615 TSENEKLKTLVSSLEKKIDET 635 (1151)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~el 635 (1151)
+.+..+|..-+++|++.++.+
T Consensus 5 ee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 237
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=25.30 E-value=1.2e+02 Score=21.50 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQILR 685 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~lr 685 (1151)
+++.++++|-.+...|+.|...++
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444555544444
No 238
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=25.13 E-value=1e+02 Score=21.57 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKK 631 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~ 631 (1151)
++++++|-.++..|+.++..|+.-
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456667777777777766666543
No 239
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=25.12 E-value=2.4e+02 Score=21.79 Aligned_cols=7 Identities=43% Similarity=0.530 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001117 615 TSENEKL 621 (1151)
Q Consensus 615 ~~e~~kL 621 (1151)
.+|+..|
T Consensus 16 k~ENshL 22 (54)
T 1deb_A 16 KMENSNL 22 (54)
T ss_dssp HHHHHHH
T ss_pred HHHhhHH
Confidence 3333333
No 240
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.85 E-value=1e+02 Score=21.71 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEK 630 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~ 630 (1151)
++++++|-.++..|+.++..|+.
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 45666666666666666666554
No 241
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=24.65 E-value=4.8e+02 Score=25.20 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 563 AKLQSALQEMQLQFKESKEKLMKEIE 588 (1151)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~~l~~e~~ 588 (1151)
+++.+++++.-..+++....+..|.+
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~~ 96 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAELE 96 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 242
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.23 E-value=1.8e+02 Score=29.43 Aligned_cols=18 Identities=17% Similarity=0.470 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001117 667 MHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 667 ~~~Le~~l~~Le~E~~~l 684 (1151)
+..+++++..|++||+.+
T Consensus 124 ie~l~eEi~~LkeEn~eL 141 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKEL 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 243
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.17 E-value=1.1e+02 Score=21.55 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKK 631 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~ 631 (1151)
++++++|-.++..|+.++..|++-
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456666777777777766666543
No 244
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=24.00 E-value=3.1e+02 Score=22.75 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 656 AESKIVQLKTAMHRLEEKVSDMET 679 (1151)
Q Consensus 656 ~~~~~~~l~~~~~~Le~~l~~Le~ 679 (1151)
+..++-.+.=+..-|++++..++.
T Consensus 51 LNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 51 LNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----
T ss_pred hhHHHHHhHHHHHHHHHHHHHHhc
Confidence 334444444455555555555543
No 245
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.93 E-value=1.7e+02 Score=19.69 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..+..++..|+.++..|+-|+..++|
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555555566666666666665554
No 246
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=23.13 E-value=28 Score=22.56 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=9.8
Q ss_pred hhhhHHHHHHHHHHH
Q 001117 425 SCLRIQRDLRMYLAK 439 (1151)
Q Consensus 425 AAi~IQ~~~R~~~~r 439 (1151)
|+..||-+||.+..+
T Consensus 8 A~llI~d~~r~~k~r 22 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc
Confidence 566777777766543
No 247
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.02 E-value=3.1e+02 Score=22.30 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 655 EAESKIVQLKTAMHRLEEKVSDM 677 (1151)
Q Consensus 655 ~~~~~~~~l~~~~~~Le~~l~~L 677 (1151)
+++.....|..++..|+.++.-|
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443333
No 248
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.98 E-value=1.3e+02 Score=21.27 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKKI 632 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l 632 (1151)
++++++|-.++..|+.++..|++-+
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4667777777777777776666543
No 249
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.55 E-value=2.3e+02 Score=20.67 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 001117 614 LTSENEKLKT 623 (1151)
Q Consensus 614 L~~e~~kLe~ 623 (1151)
|+.+...|+.
T Consensus 8 lenevaslen 17 (49)
T 3he5_A 8 LENEVASLEN 17 (49)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 3333333333
No 250
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.47 E-value=9e+02 Score=27.55 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 651 KQALEAESKIVQLKTAMHRLEEKVS 675 (1151)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~Le~~l~ 675 (1151)
..|..++..++++..+|++||..|.
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666666665443
No 251
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.45 E-value=2.9e+02 Score=21.82 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001117 666 AMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 666 ~~~~Le~~l~~Le~E~~~l 684 (1151)
++..|+.+...|..++..+
T Consensus 30 ~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 30 RVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 252
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=22.38 E-value=6.4e+02 Score=26.19 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
..|.++...+...++-|.-+-.-...++.++......+...-.-..+++..+++.-..|+..+...++.++-++.
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444443332222222333333333332222233333444444445555555555555554444
No 253
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.30 E-value=2.1e+02 Score=32.79 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 659 KIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 659 ~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
....+..+++.+.+++..+++++..++.+
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (421)
T 1ses_A 65 EKEALIARGKALGEEAKRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888888776653
No 254
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.22 E-value=67 Score=20.80 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 001117 613 ELTSENEKLKTLVSSLEKKID 633 (1151)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~ 633 (1151)
.|+-|+..|++.+..++.++.
T Consensus 4 alefendaleqkiaalkqkia 24 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHH
Confidence 344555555555555554444
No 255
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=22.18 E-value=1.4e+02 Score=23.13 Aligned_cols=11 Identities=45% Similarity=0.592 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 001117 671 EEKVSDMETEN 681 (1151)
Q Consensus 671 e~~l~~Le~E~ 681 (1151)
++++..|++|+
T Consensus 54 eeevkkleeei 64 (67)
T 1lq7_A 54 EEEVKKLEEEI 64 (67)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 256
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.05 E-value=1.6e+02 Score=22.00 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001117 610 VVEELTSENEKLKTLVSSLEKKIDETEK 637 (1151)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele~ 637 (1151)
+++....|+.+.++.+.++++++.++++
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556655555555555443
No 257
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.99 E-value=2.7e+02 Score=22.71 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1151)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~lrq 686 (1151)
.|+.++..|+.+...|+.++..|++
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 258
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.39 E-value=1.8e+02 Score=33.20 Aligned_cols=14 Identities=7% Similarity=-0.062 Sum_probs=6.6
Q ss_pred HHhchHHHHHHHhh
Q 001117 1003 VKAGLAELELWCCQ 1016 (1151)
Q Consensus 1003 Ir~nls~Le~W~~~ 1016 (1151)
|-|.=|.|-..+++
T Consensus 332 iPyRdSkLT~LLqd 345 (412)
T 3u06_A 332 IPYRNSKLTHLLMP 345 (412)
T ss_dssp CCGGGSHHHHHHGG
T ss_pred CCccccHHHHHHHH
Confidence 44554555444443
No 259
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=21.15 E-value=2.1e+02 Score=21.95 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001117 659 KIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 659 ~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
+..++++.+...+..+.+||+||
T Consensus 15 k~eeler~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 15 KLEELERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhccC
Confidence 33444444444444555555554
No 260
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=21.02 E-value=1.2e+02 Score=21.38 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 608 HAVVEELTSENEKLKTLVSSLEKK 631 (1151)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~ 631 (1151)
++++++|-.++..|+.++..|++-
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456677777777777776666543
No 261
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.00 E-value=1.4e+02 Score=24.44 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~ 681 (1151)
+.+++.++..|+.+...|..++..|.+++
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666655544
No 262
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.65 E-value=47 Score=38.31 Aligned_cols=72 Identities=19% Similarity=0.306 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001117 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1151)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~l 684 (1151)
+.+-.|..+..++..++++++.+..++.+++..+.+..+ ...++.++...+.++++.|++++.++++++..+
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGK----DTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCS----CTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666665555555444444433211110 112233445566777777777777777777554
No 263
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.03 E-value=3.6e+02 Score=29.69 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001117 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1151)
Q Consensus 653 l~~~~~~~~~l~~~~~~Le~~l~~Le~E~~~lrqq 687 (1151)
++..+..+...+.+++.++.++..++.+++..+.+
T Consensus 117 ~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 117 LNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777777777777777776653
No 264
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=20.02 E-value=2.7e+02 Score=26.05 Aligned_cols=10 Identities=10% Similarity=0.541 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 001117 668 HRLEEKVSDM 677 (1151)
Q Consensus 668 ~~Le~~l~~L 677 (1151)
.+|+.++..+
T Consensus 71 ~eL~~kvA~l 80 (125)
T 2pms_C 71 DELDAEIAKL 80 (125)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
Done!