BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001118
(1150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 272 bits (695), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 155/326 (47%), Positives = 209/326 (64%), Gaps = 8/326 (2%)
Query: 80 VMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVA 139
V V VR RPL+ RE + G+ Y D V + + S ++ FD+VF TT++VY+
Sbjct: 6 VAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEI 65
Query: 140 AQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFL 199
A +++ A+QG NGT+FAYG T+SGKT+TM G + G+IP A+ D+F I++ P REFL
Sbjct: 66 AAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFL 125
Query: 200 LRVSYLEIYNEVINDLLDPTGQN--LRIREDA-QGTYVEGIKEEVVLSPAHALSLIATGE 256
LRVSY+EIYNE I DLL T + L IRED + YV + EEVV + AL I GE
Sbjct: 126 LRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGE 185
Query: 257 EHRHVGSNNFNLLSSRSHTIFTLTIESSPTGE-NQGEEDVTLSQLNLIDLAGSE-SSKTE 314
+ RH G N SSRSHTIF + +ES GE + E V +S LNL+DLAGSE +++T
Sbjct: 186 KSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTG 245
Query: 315 TTGLRRKEGSYINKSLLTLGTVISKLTD-EKATHIPYRDSKLTRLLQSSLSGHGRISLIC 373
G+R KEG IN+SL LG VI KL+D + I YRDSKLTR+LQ+SL G+ + +IC
Sbjct: 246 AAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIIC 305
Query: 374 TVTPASSNSEETHNTLKFAHRSKHVE 399
T+TP S +ET L+FA +K+++
Sbjct: 306 TITPVS--FDETLTALQFASTAKYMK 329
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 246 bits (628), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 191/327 (58%), Gaps = 14/327 (4%)
Query: 79 NVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDV 138
N+ V RFRPL+ EVN+GD+ G+ TV P Y FD+VF +T+ VY+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP---YAFDRVFQSSTSQEQVYND 64
Query: 139 AAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP---GIIPLAVKDVFGIIQETP- 194
A+ +V ++G NGT+FAYG TSSGKTHTM G+ P GIIP V+D+F I
Sbjct: 65 CAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDE 124
Query: 195 GREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQGT-YVEGIKEEVVLSPAHALSLIA 253
EF ++VSY EIY + I DLLD + NL + ED YV+G E V SP + I
Sbjct: 125 NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTID 184
Query: 254 TGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSES-SK 312
G+ +RHV N N SSRSH+IF + ++ EN E +L L+DLAGSE SK
Sbjct: 185 EGKSNRHVAVTNMNEHSSRSHSIFLINVKQ----ENTQTEQKLSGKLYLVDLAGSEKVSK 240
Query: 313 TETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLI 372
T G E INKSL LG VIS L E +T++PYRDSK+TR+LQ SL G+ R +++
Sbjct: 241 TGAEGAVLDEAKNINKSLSALGNVISALA-EGSTYVPYRDSKMTRILQDSLGGNCRTTIV 299
Query: 373 CTVTPASSNSEETHNTLKFAHRSKHVE 399
+P+S N ET +TL F R+K ++
Sbjct: 300 ICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 246 bits (628), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 190/326 (58%), Gaps = 14/326 (4%)
Query: 79 NVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDV 138
N+ V RFRPL+ EVN+GD+ G+ TV P Y FD+VF +T+ VY+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP---YAFDRVFQSSTSQEQVYND 64
Query: 139 AAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP---GIIPLAVKDVFGIIQETP- 194
A+ +V ++G NGT+FAYG TSSGKTHTM G+ P GIIP V+D+F I
Sbjct: 65 CAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDE 124
Query: 195 GREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQGT-YVEGIKEEVVLSPAHALSLIA 253
EF ++VSY EIY + I DLLD + NL + ED YV+G E V SP + I
Sbjct: 125 NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTID 184
Query: 254 TGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSES-SK 312
G+ +RHV N N SSRSH+IF + ++ EN E +L L+DLAGSE SK
Sbjct: 185 EGKSNRHVAVTNMNEHSSRSHSIFLINVKQ----ENTQTEQKLSGKLYLVDLAGSEKVSK 240
Query: 313 TETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLI 372
T G E INKSL LG VIS L E +T++PYRDSK+TR+LQ SL G+ R +++
Sbjct: 241 TGAEGAVLDEAKNINKSLSALGNVISALA-EGSTYVPYRDSKMTRILQDSLGGNCRTTIV 299
Query: 373 CTVTPASSNSEETHNTLKFAHRSKHV 398
+P+S N ET +TL F R+K +
Sbjct: 300 ICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 245 bits (626), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/327 (43%), Positives = 190/327 (58%), Gaps = 14/327 (4%)
Query: 79 NVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDV 138
N+ V RFRPL+ EVN+GD+ G+ TV P Y FD+VF +T+ VY+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASKP---YAFDRVFQSSTSQEQVYND 64
Query: 139 AAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP---GIIPLAVKDVFGIIQETP- 194
A+ +V ++G NGT+FAYG TSSGK HTM G+ P GIIP V+D+F I
Sbjct: 65 CAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDE 124
Query: 195 GREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQGT-YVEGIKEEVVLSPAHALSLIA 253
EF ++VSY EIY + I DLLD + NL + ED YV+G E V SP + I
Sbjct: 125 NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTID 184
Query: 254 TGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSES-SK 312
G+ +RHV N N SSRSH+IF + ++ EN E +L L+DLAGSE SK
Sbjct: 185 EGKSNRHVAVTNMNEHSSRSHSIFLINVKQ----ENTQTEQKLSGKLYLVDLAGSEKVSK 240
Query: 313 TETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLI 372
T G E INKSL LG VIS L E +T++PYRDSK+TR+LQ SL G+ R +++
Sbjct: 241 TGAEGAVLDEAKNINKSLSALGNVISALA-EGSTYVPYRDSKMTRILQDSLGGNCRTTIV 299
Query: 373 CTVTPASSNSEETHNTLKFAHRSKHVE 399
+P+S N ET +TL F R+K ++
Sbjct: 300 ICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 236 bits (601), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 147/354 (41%), Positives = 196/354 (55%), Gaps = 16/354 (4%)
Query: 76 SKENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIA---YGFDKVFGPATTT 132
+++++ V RFRPL+ E G + + E SIA Y FDKVF P +
Sbjct: 9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNV---EENCISIAGKVYLFDKVFKPNASQ 65
Query: 133 RHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHG---EQKSPGIIPLAVKDVFG- 188
VY+ AA+ +V + G NGT+FAYG TSSGKTHTM G + GIIP V D+F
Sbjct: 66 EKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNH 125
Query: 189 IIQETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQGT-YVEGIKEEVVLSPAH 247
I EF ++VSY EIY + I DLLD + NL + ED YV+G E V SP
Sbjct: 126 IYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPED 185
Query: 248 ALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAG 307
+I G+ +RH+ N N SSRSH++F + ++ EN + +L L+DLAG
Sbjct: 186 VFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQ----ENLENQKKLSGKLYLVDLAG 241
Query: 308 SES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGH 366
SE SKT G E INKSL LG VIS L D THIPYRDSKLTR+LQ SL G+
Sbjct: 242 SEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGN 301
Query: 367 GRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKE 420
R +++ +PAS N ET +TL F R+K V+ N+ + + ++Y+KE
Sbjct: 302 ARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKE 355
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 229 bits (585), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 148/358 (41%), Positives = 210/358 (58%), Gaps = 19/358 (5%)
Query: 76 SKENVMVTVRFRPLSPREVNKGDEIAWYAD---GDYTVRNEYNPS----IAYGFDKVFGP 128
S E+V V VR RP++ +E + D G +V+N + + FD V+
Sbjct: 19 SSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDW 78
Query: 129 ATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP---GIIPLAVKD 185
+YD + +V+ +QG NGT+FAYG T +GKT+TM G + P G+IP +
Sbjct: 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDH 138
Query: 186 VFGIIQETPGREFLLRVSYLEIYNEVINDLL--DPTGQ-NLRIREDAQGTYVEGIKEEVV 242
+F I + +++L+R SYLEIY E I DLL D T + L+ R D G YV+ + V
Sbjct: 139 IFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDT-GVYVKDLSSFVT 197
Query: 243 LSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNL 302
S ++ G ++R VG+ N N SSRSH IF +TIE S G + GE + + +LNL
Sbjct: 198 KSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLD-GENHIRVGKLNL 256
Query: 303 IDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQS 361
+DLAGSE +KT G R KE + IN SL LG VIS L D K+THIPYRDSKLTRLLQ
Sbjct: 257 VDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQD 316
Query: 362 SLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIMDEK-SLIKKYQ 418
SL G+ + ++ V PAS N EET TL++A+R+K+++ K N+ D K +L++++Q
Sbjct: 317 SLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNE--DPKDALLREFQ 372
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/340 (39%), Positives = 191/340 (56%), Gaps = 12/340 (3%)
Query: 74 SKSKENVMVTVRFRPLSPREVNKGDE-IAWYADGDYTVRNEYNPSIAYGFDKVFGPATTT 132
S S ++ V RFRP + E+ G + I + D + ++ FD+VF +
Sbjct: 2 SSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQ 61
Query: 133 RHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHG----EQKSPGIIPLAVKDVF- 187
++D + + V+ + G NGTVFAYG T +GK++TM G + G+IP V+ +F
Sbjct: 62 SDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFT 121
Query: 188 GIIQETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDA-QGTYVEGIKEEVVLSPA 246
I+ E+ +RVSY+EIY E I DLL P NL + E+ +G YV+G+ E V S
Sbjct: 122 SILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQ 181
Query: 247 HALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLA 306
++ G R V + N N SSRSH+IF +TI T +N QL L+DLA
Sbjct: 182 EVYEVMRRGGNARAVAATNMNQESSRSHSIFVITI----TQKNVETGSAKSGQLFLVDLA 237
Query: 307 GSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSG 365
GSE KT +G +E INKSL LG VI+ LTD K++H+PYRDSKLTR+LQ SL G
Sbjct: 238 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGG 297
Query: 366 HGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQN 405
+ R +LI +P+S N ET +TL+F R+K ++ KA N
Sbjct: 298 NSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVN 337
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 219 bits (557), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 199/345 (57%), Gaps = 19/345 (5%)
Query: 76 SKENVMVTVRFRPLSPRE-------VNKGDE-----IAWYADGDYTVRNEYNPSIAYGFD 123
S +N+ V VR RPL+ RE + + DE I + + + + FD
Sbjct: 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFD 61
Query: 124 KVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAV 183
V+ + ++ + + +++ ++G N T+FAYG T +GKT TM G ++ PG IP +
Sbjct: 62 AVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSF 121
Query: 184 KDVFGIIQETPGRE-FLLRVSYLEIYNEVINDLLDPTGQNLRIRED-AQGTYVEGIKEEV 241
K +F I + + FL+ SYLE+YNE I DL+ L ++ED +G YV+G+
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYVDGLSMHR 180
Query: 242 VLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLN 301
V + A +L+ G +RHV + N SSRSH+IF + IE S EN+ E + + +LN
Sbjct: 181 VTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENK--EVIRVGKLN 238
Query: 302 LIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQ 360
L+DLAGSE SKT TG EG+ IN SL LG VISKL E ATHIPYRDSKLTRLLQ
Sbjct: 239 LVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLV-EGATHIPYRDSKLTRLLQ 297
Query: 361 SSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQN 405
SL G+ + + ++PAS+N +ET +TL++A R+K ++ K N
Sbjct: 298 DSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRIN 342
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 215 bits (548), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/371 (37%), Positives = 205/371 (55%), Gaps = 44/371 (11%)
Query: 76 SKENVMVTVRFRPLSPREVNKGDEIAWYAD---GDYTVRNEYNPSIAYG-------FDKV 125
+ E + V R RPLS +E G E D G T+RN P A G FD V
Sbjct: 19 ASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRN---PRAAPGELPKTFTFDAV 75
Query: 126 FGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP---GIIPLA 182
+ ++ +YD + +++ +QG NGTVFAYG T +GKT+TM G P G+IP A
Sbjct: 76 YDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNA 135
Query: 183 VKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDP-TGQNLRIREDAQ-GTYVEGIKEE 240
+ +F I + +++L+R SYLEIY E I DLL G+ L ++E+ + G Y++ +
Sbjct: 136 FEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSF 195
Query: 241 VVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQL 300
V + ++ G + R VGS + N +SSRSH IF +T+E S G + G++ + + +L
Sbjct: 196 VTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSD-GQDHIRVGKL 254
Query: 301 NLIDLAGSE---SSKTETTGL----------------------RRKEGSYINKSLLTLGT 335
NL+DLAGSE + T G R KE S IN SL LG
Sbjct: 255 NLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGN 314
Query: 336 VISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRS 395
VI+ L ++THIPYRDSKLTRLLQ SL G+ + ++ T+ PAS + +E+ +TL+FA+R+
Sbjct: 315 VIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRA 374
Query: 396 KHVEIKASQNK 406
K+++ K N+
Sbjct: 375 KNIKNKPRVNE 385
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 212 bits (540), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 204/359 (56%), Gaps = 26/359 (7%)
Query: 70 RPETSKSKENVMVTVRFRPLSPRE--VNKGDEIAWYADGDYTVRNEYNPSIA--YGFDKV 125
R KS +N+ V VR RPL+ RE + + + + R+ + + + FD+
Sbjct: 15 RQPQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRS 74
Query: 126 FGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP--------- 176
FGP + VY V ++ + G N TVFAYG T +GKTHTM G + +
Sbjct: 75 FGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDS 134
Query: 177 --GIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLL--DPTGQNLRIREDAQ-- 230
GIIP A+ +F ++ E+ +R+SYLE+YNE + DLL D T + +RI +D+
Sbjct: 135 DIGIIPRALSHLFDELRMME-VEYTMRISYLELYNEELCDLLSTDDTTK-IRIFDDSTKK 192
Query: 231 -GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGEN 289
++G++E V S L+ G+E R + N SSRSHT+F++ + G
Sbjct: 193 GSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENG-I 251
Query: 290 QGEEDVTLSQLNLIDLAGSE--SSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATH 347
+GE+ + + +LNL+DLAGSE S G+R +E IN+SLLTLG VI+ L D +A H
Sbjct: 252 EGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-RAPH 310
Query: 348 IPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNK 406
+PYR+SKLTRLLQ SL G + S+I T++P + EET +TL++AHR+K+++ K N+
Sbjct: 311 VPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 210 bits (534), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 190/346 (54%), Gaps = 29/346 (8%)
Query: 80 VMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIAYG----------FDKVFGPA 129
V V VR RP++ RE + + D + + N N +++ G +D F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 130 TTTRH--------VYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPL 181
+ V+ ++++ A G N +FAYG T SGK++TM G PG+IP
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPR 122
Query: 182 AVKDVFGIIQETPGRE--FLLRVSYLEIYNEVINDLLDPTG--QNLRIREDAQ-GTYVEG 236
+F Q+ E F + VSY+EIYNE + DLLDP G Q L++RE + G YV+G
Sbjct: 123 LCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDG 182
Query: 237 IKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVT 296
+ + V S SL++ G + R V + N N SSRSH +F +T+ + G
Sbjct: 183 LSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEK 242
Query: 297 LSQLNLIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKA-----THIPY 350
+ +L+L+DLAGSE ++KT G R KEGS INKSL TLG VIS L D+ A +PY
Sbjct: 243 VGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPY 302
Query: 351 RDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSK 396
RDS LT LL+ SL G+ + +++ TV+PA+ N +ET +TL++A R+K
Sbjct: 303 RDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 190/337 (56%), Gaps = 25/337 (7%)
Query: 80 VMVTVRFRPLSPREVNKGDEIAWYAD---GDYTVRNEYNPSIAYGFDKVFGPATTTRHVY 136
V V +R RPL P+E+ G + + G T+ + + +GF V VY
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRH----FGFHVVLAEDAGQEAVY 68
Query: 137 DVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGE-------QKSPGIIPLAVKDVFGI 189
Q ++ +G N TVFAYG T SGKT+TM GE + GI+P A+ + F +
Sbjct: 69 QACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVASLLEDEQGIVPRAMAEAFKL 127
Query: 190 IQETPGREFLLRVSYLEIYNEVINDLLD--PTGQNLRIREDAQGTYV-EGIKEEVVLSPA 246
I E + L+ VSYLE+Y E DLL+ +++++RED +G V G+KE V
Sbjct: 128 IDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLD 187
Query: 247 HALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQ----GEEDVTLSQLNL 302
LSL+ G RH G+ + N LSSRSHT+FT+T+E ++ + +S+ +
Sbjct: 188 EVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHF 247
Query: 303 IDLAGSESS-KTETTGLRRKEGSYINKSLLTLGTVISKLTD--EKATHIPYRDSKLTRLL 359
+DLAGSE KT +TG R KE IN SLL LG VIS L D + +HIPYRDSK+TR+L
Sbjct: 248 VDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRIL 307
Query: 360 QSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSK 396
+ SL G+ + +I V+P+SS+ +ET NTL +A R++
Sbjct: 308 KDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 203 bits (517), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 198/358 (55%), Gaps = 36/358 (10%)
Query: 78 ENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIA----------YGFDKVFG 127
+N+ V VR RP + E +D VR E + Y FD VFG
Sbjct: 17 KNIQVVVRVRPFNLAERKASAHSIVESD---PVRKEVSVRTGGLADKSSRKTYTFDMVFG 73
Query: 128 PATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP----------- 176
+T VY +++ + G N T+FAYG T +GKT TM GE +SP
Sbjct: 74 ASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGE-RSPNEEYCWEEDPL 132
Query: 177 -GIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRIREDAQ-- 230
GIIP + +F + + G EF ++VS LEIYNE + DLL+P+ + L++ +D +
Sbjct: 133 AGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 191
Query: 231 -GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGEN 289
G ++G++E V + ++ G R + N SSRSH++F++TI T +
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 290 QGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHI 348
GEE V + +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI+ L E+ H+
Sbjct: 252 -GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV-ERTPHV 309
Query: 349 PYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNK 406
PYR+SKLTR+LQ SL G R S+I T++PAS N EET +TL++AHR+K++ K N+
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 182/306 (59%), Gaps = 23/306 (7%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP--- 176
Y FD VFG +T VY +++ + G N T+FAYG T +GKT TM GE +SP
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE-RSPNEE 124
Query: 177 ---------GIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG---QNLR 224
GIIP + +F + + G EF ++VS LEIYNE + DLL+P+ + L+
Sbjct: 125 YTWEEDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 183
Query: 225 IREDAQ---GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTI 281
+ +D + G ++G++E V + ++ G R + N SSRSH++F++TI
Sbjct: 184 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 243
Query: 282 ESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKL 340
T + GEE V + +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI+ L
Sbjct: 244 HMKETTID-GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 341 TDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI 400
E+ H+PYR+SKLTR+LQ SL G R S+I T++PAS N EET +TL++AHR+K++
Sbjct: 303 V-ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 401 KASQNK 406
K N+
Sbjct: 362 KPEVNQ 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 182/306 (59%), Gaps = 23/306 (7%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP--- 176
Y FD VFG +T VY +++ + G N T+FAYG T +GKT TM GE +SP
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE-RSPNEE 124
Query: 177 ---------GIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG---QNLR 224
GIIP + +F + + G EF ++VS LEIYNE + DLL+P+ + L+
Sbjct: 125 YTWEEDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 183
Query: 225 IREDAQ---GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTI 281
+ +D + G ++G++E V + ++ G R + N SSRSH++F++TI
Sbjct: 184 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 243
Query: 282 ESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKL 340
T + GEE V + +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI+ L
Sbjct: 244 HMKETTID-GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 341 TDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI 400
E+ H+PYR+SKLTR+LQ SL G R S+I T++PAS N EET +TL++AHR+K++
Sbjct: 303 V-ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 401 KASQNK 406
K N+
Sbjct: 362 KPEVNQ 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 182/306 (59%), Gaps = 23/306 (7%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP--- 176
Y FD VFG +T VY +++ + G N T+FAYG T +GKT TM GE +SP
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE-RSPNEE 124
Query: 177 ---------GIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG---QNLR 224
GIIP + +F + + G EF ++VS LEIYNE + DLL+P+ + L+
Sbjct: 125 YTWEEDPLDGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 183
Query: 225 IREDAQ---GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTI 281
+ +D + G ++G++E V + ++ G R + N SSRSH++F++TI
Sbjct: 184 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 243
Query: 282 ESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKL 340
T + GEE V + +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI+ L
Sbjct: 244 HMKETTID-GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 341 TDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI 400
E+ H+PYR+SKLTR+LQ SL G R S+I T++PAS N EET +TL++AHR+K++
Sbjct: 303 V-ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 401 KASQNK 406
K N+
Sbjct: 362 KPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 182/306 (59%), Gaps = 23/306 (7%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP--- 176
Y FD VFG +T VY +++ + G N T+FAYG T +GKT TM GE +SP
Sbjct: 65 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE-RSPNEE 123
Query: 177 ---------GIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG---QNLR 224
GIIP + +F + + G EF ++VS LEIYNE + DLL+P+ + L+
Sbjct: 124 YTWEEDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 182
Query: 225 IREDAQ---GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTI 281
+ +D + G ++G++E V + ++ G R + N SSRSH++F++TI
Sbjct: 183 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 242
Query: 282 ESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKL 340
T + GEE V + +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI+ L
Sbjct: 243 HMKETTID-GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 301
Query: 341 TDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI 400
E+ H+PYR+SKLTR+LQ SL G R S+I T++PAS N EET +TL++AHR+K++
Sbjct: 302 V-ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 360
Query: 401 KASQNK 406
K N+
Sbjct: 361 KPEVNQ 366
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 182/306 (59%), Gaps = 23/306 (7%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP--- 176
Y FD VFG +T VY +++ + G N T+FAYG T +GKT TM GE +SP
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE-RSPNEE 124
Query: 177 ---------GIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG---QNLR 224
GIIP + +F + + G EF ++VS LEIYNE + DLL+P+ + L+
Sbjct: 125 YTWEEVPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 183
Query: 225 IREDAQ---GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTI 281
+ +D + G ++G++E V + ++ G R + N SSRSH++F++TI
Sbjct: 184 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 243
Query: 282 ESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKL 340
T + GEE V + +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI+ L
Sbjct: 244 HMKETTID-GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 341 TDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI 400
E+ H+PYR+SKLTR+LQ SL G R S+I T++PAS N EET +TL++AHR+K++
Sbjct: 303 V-ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 401 KASQNK 406
K N+
Sbjct: 362 KPEVNQ 367
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 182/306 (59%), Gaps = 23/306 (7%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP--- 176
Y FD VFG +T VY +++ + G N T+FAYG T +GKT TM GE +SP
Sbjct: 68 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE-RSPNEE 126
Query: 177 ---------GIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG---QNLR 224
GIIP + +F + + G EF ++VS LEIYNE + DLL+P+ + L+
Sbjct: 127 YTWEEDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 185
Query: 225 IREDAQ---GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTI 281
+ +D + G ++G++E V + ++ G R + N SSRSH++F++TI
Sbjct: 186 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 245
Query: 282 ESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKL 340
T + GEE V + +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI+ L
Sbjct: 246 HMKETTID-GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 304
Query: 341 TDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI 400
E+ H+PYR+SKLTR+LQ SL G R S+I T++PAS N EET +TL++AHR+K++
Sbjct: 305 V-ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 363
Query: 401 KASQNK 406
K N+
Sbjct: 364 KPEVNQ 369
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 182/306 (59%), Gaps = 23/306 (7%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP--- 176
Y FD VFG +T VY +++ + G N T+FAYG T +GKT TM GE +SP
Sbjct: 57 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE-RSPNEE 115
Query: 177 ---------GIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG---QNLR 224
GIIP + +F + + G EF ++VS LEIYNE + DLL+P+ + L+
Sbjct: 116 YTWEEDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 174
Query: 225 IREDAQ---GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTI 281
+ +D + G ++G++E V + ++ G R + N SSRSH++F++TI
Sbjct: 175 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 234
Query: 282 ESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKL 340
T + GEE V + +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI+ L
Sbjct: 235 HMKETTID-GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 293
Query: 341 TDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI 400
E+ H+PYR+SKLTR+LQ SL G R S+I T++PAS N EET +TL++AHR+K++
Sbjct: 294 V-ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 352
Query: 401 KASQNK 406
K N+
Sbjct: 353 KPEVNQ 358
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 179/298 (60%), Gaps = 23/298 (7%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP--- 176
Y FD VFG +T VY +++ + G N T+FAYG T +GKT TM GE +SP
Sbjct: 51 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE-RSPNEE 109
Query: 177 ---------GIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG---QNLR 224
GIIP + +F + + G EF ++VS LEIYNE + DLL+P+ + L+
Sbjct: 110 YTWEEDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQ 168
Query: 225 IREDAQ---GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTI 281
+ +D + G ++G++E V + ++ G R + N SSRSH++F++TI
Sbjct: 169 MFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 228
Query: 282 ESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKL 340
T + GEE V + +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI+ L
Sbjct: 229 HMKETTID-GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 287
Query: 341 TDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHV 398
E+ H+PYR+SKLTR+LQ SL G R S+I T++PAS N EET +TL++AHR+K++
Sbjct: 288 V-ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 190/337 (56%), Gaps = 25/337 (7%)
Query: 80 VMVTVRFRPLSPREVNKGDEIAWYAD---GDYTVRNEYNPSIAYGFDKVFGPATTTRHVY 136
V V +R RPL P+E+ G + + G T+ + + +GF V VY
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRH----FGFHVVLAEDAGQEAVY 68
Query: 137 DVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGE-------QKSPGIIPLAVKDVFGI 189
Q ++ +G N TVFAYG T SGKT+TM GE + GI+P A+ + F +
Sbjct: 69 QACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVASLLEDEQGIVPRAMAEAFKL 127
Query: 190 IQETPGREFLLRVSYLEIYNEVINDLLD--PTGQNLRIREDAQGTYV-EGIKEEVVLSPA 246
I E + L+ VSYLE+Y E DLL+ +++++RED +G V G+KE V
Sbjct: 128 IDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLD 187
Query: 247 HALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQ----GEEDVTLSQLNL 302
LSL+ G RH G+ + N LSSRSHT+FT+T++ ++ + +S+ +
Sbjct: 188 EVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFHF 247
Query: 303 IDLAGSESS-KTETTGLRRKEGSYINKSLLTLGTVISKLTD--EKATHIPYRDSKLTRLL 359
+DLAGSE KT +TG RKE IN SLL LG VIS L D + ++IPYRDSK+TR+L
Sbjct: 248 VDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKITRIL 307
Query: 360 QSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSK 396
+ SL G+ + +I V+P+SS+ +ET NTL +A R++
Sbjct: 308 KDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 178/313 (56%), Gaps = 14/313 (4%)
Query: 96 KGDEIAWYADGDYTVRN---EYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGIN 152
K +E++++ T +N + N + + FD VF +T V++ + ++ + G N
Sbjct: 47 KQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYN 106
Query: 153 GTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFL-LRVSYLEIYNEV 211
TV AYG T +GKTHTM G PG++ L + ++ + E + VSYLE+YNE
Sbjct: 107 CTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQ 166
Query: 212 INDLLDPTGQNLRIREDAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLS 270
I DLL +G L +RED Q G V G+ S L L+ G ++R + N S
Sbjct: 167 IRDLLVNSGP-LAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATS 225
Query: 271 SRSHTIFTLTI--ESSPTGENQGEEDVTLSQLNLIDLAGSESSKTE-TTGLRRKEGSYIN 327
SRSH +F + + + NQ +V +++++LIDLAGSE + T G R EG+ IN
Sbjct: 226 SRSHAVFQIYLRQQDKTASINQ---NVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNIN 282
Query: 328 KSLLTLGTVISKLTDEK--ATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEET 385
+SLL LG VI+ L D K HIPYR+SKLTRLL+ SL G+ + +I V+P+S ++T
Sbjct: 283 RSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDT 342
Query: 386 HNTLKFAHRSKHV 398
+NTLK+A+R+K +
Sbjct: 343 YNTLKYANRAKDI 355
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 159/274 (58%), Gaps = 12/274 (4%)
Query: 135 VYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHG---EQKSPGIIPLAVKDVFGIIQ 191
VY+ A+ VV+ A+ G NGT+ YG T +GKT+TM G K GI+P A++ VF +I+
Sbjct: 88 VYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIE 147
Query: 192 ETPGREFLLRVSYLEIYNEVINDLLD------PTGQNLRIREDAQGTYVEGIKEEVVLSP 245
E P +RVSYLEIYNE + DLL P+ + I E+ QG +++G+ +
Sbjct: 148 ERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQE 207
Query: 246 AHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDL 305
A SL+ GE +R + S+ N SSRSH IFT+ +E+ EE S++NL+DL
Sbjct: 208 EDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHS--RTLSEEKYITSKINLVDL 265
Query: 306 AGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLS 364
AGSE K+ + G KE +YINKSL L I L D+K HIP+R KLT L+ SL
Sbjct: 266 AGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLG 325
Query: 365 GHGRISLICTVTPASSNSEETHNTLKFAHRSKHV 398
G+ + L+ + ++ EET ++L+FA R K V
Sbjct: 326 GNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 172/317 (54%), Gaps = 20/317 (6%)
Query: 117 SIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP 176
++ Y FD +G +T + +Y + Q ++ ++G N +V AYG T +GKTHTM G + P
Sbjct: 64 TLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQP 123
Query: 177 GIIPLAVKDVFGIIQE--TPGREFLLRV--SYLEIYNEVINDLLDPTGQNLRIREDAQGT 232
G+IP A+ D+ + +E GR + L V SYLEIY E + DLLDP +L IRED +G
Sbjct: 124 GVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGN 183
Query: 233 -YVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIES----SPTG 287
+ G+ ++ + S A +R VG+ N SSRSH + + ++ +P
Sbjct: 184 ILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFR 243
Query: 288 ENQGEEDVTLSQLNLIDLAGSESS-KTETTGLRRKEGSYINKSLLTLGTVISKLTDEKAT 346
+ +G +L LIDLAGSE + +T GLR KE IN SL LG V+ L ++
Sbjct: 244 QREG-------KLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDAL-NQGLP 295
Query: 347 HIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNK 406
+PYRDSKLTRLLQ SL G LI + P +T + L FA RSK V + N+
Sbjct: 296 RVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNE 355
Query: 407 IMDEKSL--IKKYQKEI 421
+ +L +K QKE+
Sbjct: 356 SLQPHALGPVKLSQKEL 372
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 183 bits (465), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 130/372 (34%), Positives = 197/372 (52%), Gaps = 41/372 (11%)
Query: 67 PLDRPETSKSKENVMVTVRFRPLSPREVNKGDEIAWYADGDYT-VRNEYNPS---IAYGF 122
P++ P S V V VR RP + RE+++ + G T + N P ++ F
Sbjct: 14 PINMPGAS-----VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSF 68
Query: 123 DKVFGPATTT--------RHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQK 174
D + T+ + VY + ++ A +G N +FAYG T +GK++TM G+Q+
Sbjct: 69 DYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE 128
Query: 175 SP--GIIPLAVKDVFGIIQETPG--REFLLRVSYLEIYNEVINDLLDPTGQ-NLRIREDA 229
GIIP +D+F I +T + + VSY+EIY E + DLL+P + NLR+RE
Sbjct: 129 KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHP 188
Query: 230 Q-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGE 288
G YVE + + V S L+ +G + R V + N N SSRSH +F +
Sbjct: 189 LLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK---R 245
Query: 289 NQGEEDVT---LSQLNLIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVISKLTD-- 342
+ E ++T +S+++L+DLAGSE + T G R KEG+ INKSL TLG VIS L +
Sbjct: 246 HDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMD 305
Query: 343 ---------EKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAH 393
+K IPYRDS LT LL+ +L G+ R +++ ++PA N +ET +TL++A
Sbjct: 306 SGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYAD 365
Query: 394 RSKHVEIKASQN 405
R+K + S N
Sbjct: 366 RAKQIRNTVSVN 377
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/359 (35%), Positives = 192/359 (53%), Gaps = 36/359 (10%)
Query: 80 VMVTVRFRPLSPREVNKGDEIAWYADGDYT-VRNEYNPS---IAYGFDKVFGPATTT--- 132
V V VR RP + RE+++ + G T + N P ++ FD + T+
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 133 -----RHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP--GIIPLAVKD 185
+ VY + ++ A +G N +FAYG T +GK++TM G+Q+ GIIP +D
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 186 VFGIIQETPG--REFLLRVSYLEIYNEVINDLLDPTGQ-NLRIREDAQ-GTYVEGIKEEV 241
+F I +T + + VSY+EIY E + DLL+P + NLR+RE G YVE + +
Sbjct: 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLA 185
Query: 242 VLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVT---LS 298
V S L+ +G + R V + N N SSRSH +F + + E ++T +S
Sbjct: 186 VTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK---RHDAETNITTEKVS 242
Query: 299 QLNLIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVISKLTD-----------EKAT 346
+++L+DLAGSE + T G R KEG+ INKSL TLG VIS L + +K
Sbjct: 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTD 302
Query: 347 HIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQN 405
IPYRDS LT LL+ +L G+ R +++ ++PA N +ET +TL++A R+K + S N
Sbjct: 303 FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 177/330 (53%), Gaps = 45/330 (13%)
Query: 119 AYGFDKVFGP-------ATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHG 171
++ FDK F T HVYD + ++ +G + +FAYG T SGK++TM G
Sbjct: 97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156
Query: 172 EQKSPGIIPLAVKDVFGII----QETPGREFLLRVSYLEIYNEVINDLLDPTGQN----- 222
PG+IP +D+F I ETP + ++VSY E+YNE + DLL P N
Sbjct: 157 TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYY 216
Query: 223 LRIRED-AQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTI 281
L++RE +G YV+ + E V + + G+ R V S N SSRSH +FT+ +
Sbjct: 217 LKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIML 276
Query: 282 ESSPTGENQGEEDVT--LSQLNLIDLAGSESSK-TETTGLRRKEGSYINKSLLTLGTVIS 338
+ + +D T S++ L+DLAGSE +K TE TG R +EGS INKSL TLG VI+
Sbjct: 277 KQ--IHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIA 334
Query: 339 KLTDEKATH---------------------IPYRDSKLTRLLQSSLSGHGRISLICTVTP 377
L D K++ +PYRDS LT LL+ SL G+ + ++I ++P
Sbjct: 335 ALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP 394
Query: 378 ASSNSEETHNTLKFAHRSKHVEIKASQNKI 407
++ +ET +TL++A ++K + +A N++
Sbjct: 395 --TDYDETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 127/359 (35%), Positives = 192/359 (53%), Gaps = 36/359 (10%)
Query: 80 VMVTVRFRPLSPREVNKGDEIAWYADGDYT-VRNEYNPS---IAYGFDKVFGPATTT--- 132
V V VR RP + RE+++ + G T + N P ++ FD + T+
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 133 -----RHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP--GIIPLAVKD 185
+ VY + ++ A +G N +FAYG T +GK++TM G+Q+ GIIP +D
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 186 VFGIIQETPG--REFLLRVSYLEIYNEVINDLLDPTGQ-NLRIREDAQ-GTYVEGIKEEV 241
+F I +T + + VSY+EIY E + DLL+P + NLR+RE G YVE + +
Sbjct: 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLA 185
Query: 242 VLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVT---LS 298
V S L+ +G + R V + N N SSRSH +F + + E ++T +S
Sbjct: 186 VTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK---RHDAETNITTEKVS 242
Query: 299 QLNLIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVISKLTD-----------EKAT 346
+++L+DLAGSE + T G R KEG+ INKSL TLG VIS L + +K
Sbjct: 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTD 302
Query: 347 HIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQN 405
IPYRDS LT LL+ +L G+ R +++ ++PA N +ET +TL++A R+K + S N
Sbjct: 303 FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 180 bits (457), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 127/359 (35%), Positives = 192/359 (53%), Gaps = 36/359 (10%)
Query: 80 VMVTVRFRPLSPREVNKGDEIAWYADGDYT-VRNEYNPS---IAYGFDKVFGPATTT--- 132
V V VR RP + RE+++ + G T + N P ++ FD + T+
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 133 -----RHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP--GIIPLAVKD 185
+ VY + ++ A +G N +FAYG T +GK++TM G+Q+ GIIP +D
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 186 VFGIIQETPG--REFLLRVSYLEIYNEVINDLLDPTGQ-NLRIREDAQ-GTYVEGIKEEV 241
+F I +T + + VSY+EIY E + DLL+P + NLR+RE G YVE + +
Sbjct: 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLA 185
Query: 242 VLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVT---LS 298
V S L+ +G + R V + N N SSRSH +F + + E ++T +S
Sbjct: 186 VTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQK---RHDAETNITTEKVS 242
Query: 299 QLNLIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVISKLTD-----------EKAT 346
+++L+DLAGSE + T G R KEG+ INKSL TLG VIS L + +K
Sbjct: 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTD 302
Query: 347 HIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQN 405
IPYRDS LT LL+ +L G+ R +++ ++PA N +ET +TL++A R+K + S N
Sbjct: 303 FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 176 bits (446), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 185/347 (53%), Gaps = 24/347 (6%)
Query: 77 KENVMVTVRFRPLSPREVNKGDEIAWYADG--------DYTVRNEYNPSIAYGFDKVFGP 128
++N+ V R RP E N+ Y D D +++ I + FD+VF P
Sbjct: 58 RDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQI-FSFDQVFHP 116
Query: 129 ATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFG 188
++ ++++ + ++ A+ G N +FAYG T SGKT+TM G +S G+IP V +F
Sbjct: 117 LSSQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFD 175
Query: 189 IIQ--ETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIR---EDAQGTYVEGIKEEVVL 243
I+ G E+ ++ ++LEIYNEV+ DLL +++ IR + YV I EE VL
Sbjct: 176 SIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVL 235
Query: 244 SPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLI 303
P H L+ T + +R S N SSRSH + L + G + ++++++ +NL+
Sbjct: 236 DPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL----IGRHAEKQEISVGSINLV 291
Query: 304 DLAGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSL 363
DLAGSES KT T R E IN+SL L VI L +K HIPYR+SKLT LL SL
Sbjct: 292 DLAGSESPKTST---RMTETKNINRSLSELTNVILALL-QKQDHIPYRNSKLTHLLMPSL 347
Query: 364 SGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI-KASQNKIMD 409
G+ + + V+P +E+ +L+FA ++ KA +N+ ++
Sbjct: 348 GGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 394
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 176 bits (446), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 182/337 (54%), Gaps = 20/337 (5%)
Query: 76 SKENVMVTVRFRPLSPREVNKGDE----IAWYADGDYTVR--NEYNPSIAYGFDKVFGPA 129
SK N+ V R RP++ +E +G E + + AD D + ++ P +++ DKVF P
Sbjct: 2 SKGNIRVIARVRPVT-KEDGEGPEATNAVTFDADDDSIIHLLHKGKP-VSFELDKVFSPQ 59
Query: 130 TTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGI 189
+ + V+ Q +V + G N +FAYG T +GKT+TM G ++PGI A++ +F
Sbjct: 60 ASQQDVFQ-EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSE 118
Query: 190 IQETPG-REFLLRVSYLEIYNEVINDLLDPTGQN---LRIREDAQGT-YVEGIKEEVVLS 244
+QE E+ + VS EIYNEV+ DLL Q +R+ D G YV G+ E V S
Sbjct: 119 VQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQS 178
Query: 245 PAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLID 304
+ G +R N N SSRSH + +T+ G + T +LNL+D
Sbjct: 179 VDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR----GVDCSTGLRTTGKLNLVD 234
Query: 305 LAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSL 363
LAGSE K+ G R +E +INKSL LG VI+ L + H+P+R+SKLT LLQ SL
Sbjct: 235 LAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQG-HVPFRNSKLTYLLQDSL 293
Query: 364 SGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI 400
SG + ++ V+P N+ ET +LKFA R + VE+
Sbjct: 294 SGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 191/355 (53%), Gaps = 17/355 (4%)
Query: 77 KENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIA--YGFDKVFGPATTTRH 134
K + V R RPL +E+ + A + ++TV + + A + +D+VF T
Sbjct: 4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDD 63
Query: 135 VYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETP 194
V++ +++V A+ G N +FAYG T SGKT T++G +PG+ P A+ ++F I+++
Sbjct: 64 VFE-DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDS 122
Query: 195 GR-EFLLRVSYLEIYNEVINDLLDPTGQN---LRIREDAQGTY-VEGIKEEVVLSPAHAL 249
+ F L+ +E+Y + + DLL P L I++D++G VE + + +
Sbjct: 123 NKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELK 182
Query: 250 SLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSE 309
++I G E RH N SSRSH I ++ IES+ N + + +L+ +DLAGSE
Sbjct: 183 TIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIEST----NLQTQAIARGKLSFVDLAGSE 238
Query: 310 S-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGR 368
K+ + G + KE INKSL LG VIS L+ HIPYR+ KLT L+ SL G+ +
Sbjct: 239 RVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ-HIPYRNHKLTMLMSDSLGGNAK 297
Query: 369 ISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKK---YQKE 420
+ ++PA SN +ETHN+L +A R + + S+N E + +KK Y KE
Sbjct: 298 TLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWKE 352
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 183/345 (53%), Gaps = 24/345 (6%)
Query: 79 NVMVTVRFRPLSPREVNKGDEIAWYADG--------DYTVRNEYNPSIAYGFDKVFGPAT 130
N+ V R RP E N+ Y D D +++ I + FD+VF P +
Sbjct: 68 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQI-FSFDQVFHPLS 126
Query: 131 TTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGII 190
+ ++++ + ++ A+ G N +FAYG T SGKT+TM G +S G+IP V +F I
Sbjct: 127 SQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 185
Query: 191 Q--ETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIR---EDAQGTYVEGIKEEVVLSP 245
+ G E+ ++ ++LEIYNEV+ DLL +++ IR + YV I EE VL P
Sbjct: 186 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 245
Query: 246 AHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDL 305
H L+ T + +R S N SSRSH + L + G + ++++++ +NL+DL
Sbjct: 246 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL----IGRHAEKQEISVGSINLVDL 301
Query: 306 AGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSG 365
AGSES KT T R E IN+SL L VI L +K HIPYR+SKLT LL SL G
Sbjct: 302 AGSESPKTST---RMTETKNINRSLSELTNVILALL-QKQDHIPYRNSKLTHLLMPSLGG 357
Query: 366 HGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI-KASQNKIMD 409
+ + + V+P +E+ +L+FA ++ KA +N+ ++
Sbjct: 358 NSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 402
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 183/345 (53%), Gaps = 24/345 (6%)
Query: 79 NVMVTVRFRPLSPREVNKGDEIAWYADG--------DYTVRNEYNPSIAYGFDKVFGPAT 130
N+ V R RP E N+ Y D D +++ I + FD+VF P +
Sbjct: 54 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQI-FSFDQVFHPLS 112
Query: 131 TTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGII 190
+ ++++ + ++ A+ G N +FAYG T SGKT+TM G +S G+IP V +F I
Sbjct: 113 SQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 171
Query: 191 Q--ETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIR---EDAQGTYVEGIKEEVVLSP 245
+ G E+ ++ ++LEIYNEV+ DLL +++ IR + YV I EE VL P
Sbjct: 172 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 231
Query: 246 AHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDL 305
H L+ T + +R S N SSRSH + L + G + ++++++ +NL+DL
Sbjct: 232 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL----IGRHAEKQEISVGSINLVDL 287
Query: 306 AGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSG 365
AGSES KT T R E IN+SL L VI L +K HIPYR+SKLT LL SL G
Sbjct: 288 AGSESPKTST---RMTETKNINRSLSELTNVILALL-QKQDHIPYRNSKLTHLLMPSLGG 343
Query: 366 HGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI-KASQNKIMD 409
+ + + V+P +E+ +L+FA ++ KA +N+ ++
Sbjct: 344 NSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 388
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 174/327 (53%), Gaps = 23/327 (7%)
Query: 79 NVMVTVRFRPLSPREVNKGDEIAWYADG--------DYTVRNEYNPSIAYGFDKVFGPAT 130
N+ V R RP E N+ Y D D +++ I + FD+VF P +
Sbjct: 57 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQI-FSFDQVFHPLS 115
Query: 131 TTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGII 190
+ ++++ + ++ A+ G N +FAYG + SGKT+TM G +S G+IP V +F I
Sbjct: 116 SQSDIFEMVSP-LIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 191 Q--ETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIR---EDAQGTYVEGIKEEVVLSP 245
+ G E+ ++ ++LEIYNEV+ DLL +++ IR + YV I EE VL P
Sbjct: 175 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 234
Query: 246 AHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDL 305
H L+ T + +R S N SSRSH + L + G + ++++++ +NL+DL
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL----IGRHAEKQEISVGSINLVDL 290
Query: 306 AGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSG 365
AGSES KT T R E IN+SL L VI L +K HIPYR+SKLT LL SL G
Sbjct: 291 AGSESPKTST---RMTETKNINRSLSELTNVILALL-QKQDHIPYRNSKLTHLLMPSLGG 346
Query: 366 HGRISLICTVTPASSNSEETHNTLKFA 392
+ + + V+P +E+ +L+FA
Sbjct: 347 NSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 182/345 (52%), Gaps = 24/345 (6%)
Query: 79 NVMVTVRFRPLSPREVNKGDEIAWYADG--------DYTVRNEYNPSIAYGFDKVFGPAT 130
N+ V R RP E N+ Y D D +++ I + FD+VF P +
Sbjct: 57 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQI-FSFDQVFHPLS 115
Query: 131 TTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGII 190
+ ++++ + ++ A+ G N +FAYG T SGKT+TM G +S G+IP V +F I
Sbjct: 116 SQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 191 Q--ETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIR---EDAQGTYVEGIKEEVVLSP 245
+ G E+ ++ ++LEIYNEV+ DLL +++ IR + YV I EE VL P
Sbjct: 175 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 234
Query: 246 AHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDL 305
H L+ T + +R S N SSRSH + L + G + ++++++ +NL+DL
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL----IGRHAEKQEISVGSINLVDL 290
Query: 306 AGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSG 365
AGSES KT T R E I +SL L VI L +K HIPYR+SKLT LL SL G
Sbjct: 291 AGSESPKTST---RMTETKNIKRSLSELTNVILALL-QKQDHIPYRNSKLTHLLMPSLGG 346
Query: 366 HGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI-KASQNKIMD 409
+ + + V+P +E+ +L+FA ++ KA +N+ ++
Sbjct: 347 NSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 391
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 170 bits (430), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/330 (33%), Positives = 180/330 (54%), Gaps = 14/330 (4%)
Query: 77 KENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEY--NPSIAYGFDKVFGPATTTRH 134
K + V R RPL+ +E ++ ++ ++TV + + + + +D+VF +
Sbjct: 12 KGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQDD 71
Query: 135 VYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETP 194
+++ +++V A+ G N +FAYG T SGKT T++G + +PG+ P A K++F I++
Sbjct: 72 IFE-DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNILKRDS 130
Query: 195 GR-EFLLRVSYLEIYNEVINDLLDPTGQ---NLRIREDAQG-TYVEGIKEEVVLSPAHAL 249
R F L+ +E+Y + + DLL P L I++D++G +VE + + +
Sbjct: 131 KRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTLEELR 190
Query: 250 SLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSE 309
++ G E RHV N N SSRSH I ++ IES + + +L+ +DLAGSE
Sbjct: 191 MILERGSERRHVSGTNMNEESSRSHLILSVVIESI----DLQTQSAARGKLSFVDLAGSE 246
Query: 310 S-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGR 368
K+ + G + KE INKSL LG VI L+ HIPYR+ KLT L+ SL G+ +
Sbjct: 247 RVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQ-HIPYRNHKLTMLMSDSLGGNAK 305
Query: 369 ISLICTVTPASSNSEETHNTLKFAHRSKHV 398
+ V+PA SN +ET+N+L +A R + +
Sbjct: 306 TLMFVNVSPAESNLDETYNSLLYASRVRTI 335
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 130/236 (55%), Gaps = 11/236 (4%)
Query: 79 NVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDV 138
++ V RFRPL+ E+ +GD+ G+ TV Y FD+V P TT VY+
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVV--IGQGKPYVFDRVLPPNTTQEQVYNA 64
Query: 139 AAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP---GIIPLAVKDVFG-IIQETP 194
A+ +V ++G NGT+FAYG TSSGKTHTM G+ P GIIP D+F I
Sbjct: 65 CAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDE 124
Query: 195 GREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQGT-YVEGIKEEVVLSPAHALSLIA 253
EF ++VSY EIY + I DLLD + NL + ED YV+G E V SP + +I
Sbjct: 125 NLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVID 184
Query: 254 TGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSE 309
G+ +RHV N N SSRSH+IF + I+ EN E +L L+DLAGSE
Sbjct: 185 EGKANRHVAVTNMNEHSSRSHSIFLINIKQ----ENVETEKKLSGKLYLVDLAGSE 236
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 159 bits (402), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 159/287 (55%), Gaps = 15/287 (5%)
Query: 122 FDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPL 181
FDK+F + V++ +Q ++ ++ G N VFAYG T SGKT TM + G+IPL
Sbjct: 434 FDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGMIPL 490
Query: 182 AVKDVFGIIQETP--GREFLLRVSYLEIYNEVINDLLDP-----TGQNLRIREDAQGTYV 234
++K +F I+E G + +R ++EIYNE I DLL+P T ++ + A T V
Sbjct: 491 SLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTV 550
Query: 235 EGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEED 294
+ + SP A++++ + R + N SSRSH+IF + ++ G N ++
Sbjct: 551 TNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQ----GYNSLTKE 606
Query: 295 VTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDS 353
+ LNLIDLAGSE + + G R KE INKSL LG VI L + +H+PYR+S
Sbjct: 607 SSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNS 666
Query: 354 KLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEI 400
KLT LL+ SL G+ + + ++P + + ET N+L+FA + + I
Sbjct: 667 KLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 171/340 (50%), Gaps = 31/340 (9%)
Query: 79 NVMVTVRFRPLSPREVNKGDEIAWY------ADGDYTVRNEYNPSIAYGFDKVFGPATTT 132
N+ V R RP P E + + I D T+ + I + FDK+F T
Sbjct: 29 NIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVIPFKFDKIFDQQETN 88
Query: 133 RHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQE 192
++ Q ++ ++ G N +FAYG T SGKT+TM GI+P + +F I +
Sbjct: 89 DEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTYTM--LNPGDGIVPATINHIFSWIDK 145
Query: 193 TPGREFLLRVS--YLEIYNEVINDLL---DPTGQN----------LRIREDAQGTYVEGI 237
R + +VS ++EIYNE I DLL P+ +N +R ++ + TY+ I
Sbjct: 146 LAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYITNI 205
Query: 238 KEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTL 297
V+ S ++ + R S N SSRSH+IF + +E G+N+G + +
Sbjct: 206 TTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLE----GKNEGTGEKSQ 261
Query: 298 SQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLT--DEKATHIPYRDSK 354
LNL+DLAGSE + + G R +E INKSL LG VI L D + HIP+R+SK
Sbjct: 262 GILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSK 321
Query: 355 LTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHR 394
LT LLQ SL G + + ++PA+ + ET N+L+FA +
Sbjct: 322 LTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASK 361
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 121/361 (33%), Positives = 177/361 (49%), Gaps = 40/361 (11%)
Query: 60 SPSPTTLPLDRPETSKSKENVMVTVRFRPLSPREVNKG--DEIAWYADGDYTVR------ 111
SP T P++ + + V VR RPL+ +E+ K D I+ + V
Sbjct: 60 SPLTVTDPIE-------EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKV 112
Query: 112 --NEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169
+Y + A+ FD F + VY A+ +V +G T FAYG T SGKTHTM
Sbjct: 113 DLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172
Query: 170 HG------EQKSPGIIPLAVKDVFGIIQETPGREFLLR--VSYLEIYNEVINDLLDPTGQ 221
G + S GI +A +DVF + + R L V++ EIYN + DLL+ +
Sbjct: 173 GGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK 232
Query: 222 NLRIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLT 280
LR+ ED+ Q V G++E +V + +I G R G N SSRSH F +
Sbjct: 233 -LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQIL 291
Query: 281 IESSPTGENQGEEDVTLSQLNLIDLAGSESSKTETTGLR--RKEGSYINKSLLTLGTVIS 338
+ + G G + +L+DLAG+E ++ R R EG+ INKSLL L I
Sbjct: 292 LRTK--GRLHG-------KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIR 342
Query: 339 KLTDEKATHIPYRDSKLTRLLQSSLSG-HGRISLICTVTPASSNSEETHNTLKFAHRSKH 397
L KA H P+R+SKLT++L+ S G + R +I ++P S+ E T NTL++A R K
Sbjct: 343 ALGQNKA-HTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKE 401
Query: 398 V 398
+
Sbjct: 402 L 402
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 153 bits (386), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 172/341 (50%), Gaps = 33/341 (9%)
Query: 80 VMVTVRFRPLSPREVNKG--DEIAWYADGDYTVR--------NEYNPSIAYGFDKVFGPA 129
+ V VR RPL+ +E+ K D I+ + V +Y + A+ FD F
Sbjct: 53 ICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 112
Query: 130 TTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHG------EQKSPGIIPLAV 183
+ VY A+ +V +G T FAYG T SGKTHTM G + S GI +A
Sbjct: 113 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMAS 172
Query: 184 KDVFGIIQETPGREFLLR--VSYLEIYNEVINDLLDPTGQNLRIREDA-QGTYVEGIKEE 240
+DVF + + R+ L V++ EIYN + DLL+ + LR+ ED Q V G++E
Sbjct: 173 RDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAK-LRVLEDGKQQVQVVGLQEH 231
Query: 241 VVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQL 300
+V S + +I G R G N SSRSH F + + + G G +
Sbjct: 232 LVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK--GRMHG-------KF 282
Query: 301 NLIDLAGSESSKTETTGLR--RKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRL 358
+L+DLAG+E ++ R R EG+ INKSLL L I L KA H P+R+SKLT++
Sbjct: 283 SLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQV 341
Query: 359 LQSSLSG-HGRISLICTVTPASSNSEETHNTLKFAHRSKHV 398
L+ S G + R +I T++P S+ E T NTL++A R K +
Sbjct: 342 LRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 179/364 (49%), Gaps = 40/364 (10%)
Query: 57 VSHSPSPTTLPLDRPETSKSKENVMVTVRFRPLSPREVNKGD-EIAWYADGDYTVRNE-- 113
+ + P T P+D + + V VR RPL+ +E D ++ D + +E
Sbjct: 75 LDYRPLTTADPID-------EHRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPK 127
Query: 114 -------YNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKT 166
Y + + FD F + VY A+ +V + T FAYG T SGKT
Sbjct: 128 QKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKT 187
Query: 167 HTMHG------EQKSPGIIPLAVKDVFGIIQETPGREFLLRV--SYLEIYNEVINDLLDP 218
HTM G + S GI LA +DVF ++++ ++ L+V ++ EIY+ + DLL+
Sbjct: 188 HTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNR 247
Query: 219 TGQNLRIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIF 277
+ LR+ ED Q V G++E V L LI G R G + N SSRSH +F
Sbjct: 248 KTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVF 306
Query: 278 TLTIESSPTGENQGEEDVTLSQLNLIDLAGSESSKTETTGLR--RKEGSYINKSLLTLGT 335
+ + G+ G + +LIDLAG+E ++ R R EG+ INKSLL L
Sbjct: 307 QIILRRK--GKLHG-------KFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKE 357
Query: 336 VISKLTDEKATHIPYRDSKLTRLLQSSLSG-HGRISLICTVTPASSNSEETHNTLKFAHR 394
I L K H P+R SKLT++L+ S G + R +I T++P ++ E T NTL++A+R
Sbjct: 358 CIRALGRNKP-HTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANR 416
Query: 395 SKHV 398
K +
Sbjct: 417 VKEL 420
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 117/342 (34%), Positives = 172/342 (50%), Gaps = 35/342 (10%)
Query: 80 VMVTVRFRPLSPREVNKG--DEIAWYADGDYTVR--------NEYNPSIAYGFDKVFGPA 129
+ V VR RPL+ +E+ K D I+ + V +Y + A+ FD F
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 130 TTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHG------EQKSPGIIPLAV 183
+ VY A+ +V +G T FAYG T SGKTHTM G + S GI +A
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 120
Query: 184 KDVFGIIQETPGREFL---LRVSYLEIYNEVINDLLDPTGQNLRIREDA-QGTYVEGIKE 239
+DVF +++ P L + V++ EIYN + DLL+ + LR+ ED+ Q V G++E
Sbjct: 121 RDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK-LRVLEDSRQQVQVVGLQE 178
Query: 240 EVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQ 299
+V + +I G R G N SSRSH F + + + G G +
Sbjct: 179 YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK--GRLHG-------K 229
Query: 300 LNLIDLAGSESSKTETTGLR--RKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTR 357
+L+DLAG+E ++ R R EG+ INKSLL L I L KA H P+R+SKLT+
Sbjct: 230 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQ 288
Query: 358 LLQSSLSG-HGRISLICTVTPASSNSEETHNTLKFAHRSKHV 398
+L+ S G + R +I ++P S+ E T NTL++A R K +
Sbjct: 289 VLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 146 bits (369), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 152/302 (50%), Gaps = 25/302 (8%)
Query: 117 SIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSP 176
S + FD +F P+ T + +++ Q +V ++ G N +FAYG T SGKT+TM
Sbjct: 52 SYNFQFDMIFEPSHTNKEIFEEIRQ-LVQSSLDGYNVCIFAYGQTGSGKTYTM--LNAGD 108
Query: 177 GIIPLAVKDVFGIIQETP--GREFLLRVSYLEIYNEVINDLL-------------DPTGQ 221
G+IP+ + +F G + + Y+EIYNE I DLL D
Sbjct: 109 GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKH 168
Query: 222 NLRIREDAQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTI 281
++R + QGTY+ + + S + +++ + R + N SSRSH++F + I
Sbjct: 169 DIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHI 228
Query: 282 ESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKL 340
G N + + +LNL+DLAGSE + + TG R +E INKSL LG VI L
Sbjct: 229 N----GRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYAL 284
Query: 341 T--DEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHV 398
D +IP+R+SKLT LLQ SL G + + + P ++ ET N+L+FA +
Sbjct: 285 NTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNST 344
Query: 399 EI 400
+I
Sbjct: 345 KI 346
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 173/367 (47%), Gaps = 64/367 (17%)
Query: 77 KENVMVTVRFRPLSPREVNKGDEIAWYADG-----DYTVRNEYN---------------- 115
K N+ V R RP+ P E + + G D R +
Sbjct: 21 KGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPP 80
Query: 116 PSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHG---- 171
P + FD+VF P + V++ A +V A+ G +FAYG T SGKT TM G
Sbjct: 81 PRHDFSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 172 EQKSPGIIPLAVKDVFGIIQETPGR--EFLLRVSYLEIYNEVINDLL-----DPTGQNLR 224
+ + G+IP A++ +F + QE G+ + SY+EIYNE + DLL G
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECE 199
Query: 225 IREDAQGTYVEGIKEEVVLSPAHAL---------SLIATGEEHRHVGSNNFNLLSSRSHT 275
IR G+ EE+ ++ A + +L+ ++R V N SSRSH+
Sbjct: 200 IRRAGPGS------EELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHS 253
Query: 276 IFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSESSKTETTGL--------RRKEGSYIN 327
+F L I +GE+ + L+L+DLAGSE GL R +E IN
Sbjct: 254 VFQLQI----SGEHSSRGLQCGAPLSLVDLAGSERLDP---GLALGPGERERLRETQAIN 306
Query: 328 KSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHN 387
SL TLG VI L++ K +H+PYR+SKLT LLQ+SL G ++ + ++P N E+ N
Sbjct: 307 SSLSTLGLVIMALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLN 365
Query: 388 TLKFAHR 394
+L+FA +
Sbjct: 366 SLRFASK 372
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 147/300 (49%), Gaps = 41/300 (13%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGII 179
+ FDK+F T V+ Q +V ++ G N +FAYG T SGKT TM GII
Sbjct: 110 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTM--LNPGDGII 166
Query: 180 PLAVKDVFGIIQE--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLR---------IRED 228
P + +F I + T G ++ + ++EIYNE I DLL N IR D
Sbjct: 167 PSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHD 226
Query: 229 AQGTYVEGIKE-----------EVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIF 277
+ E++L A+ L A+ + H SSRSH+IF
Sbjct: 227 QETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHSIF 277
Query: 278 TLTIESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTV 336
+ + +G N + LNL+DLAGSE + ++ G R +E INKSL LG V
Sbjct: 278 IIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDV 333
Query: 337 ISKLTDEKAT--HIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHR 394
I L +T HIP+R+SKLT LLQ SL+G + + ++P+SS+ ET N+L+FA +
Sbjct: 334 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 393
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 147/300 (49%), Gaps = 41/300 (13%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGII 179
+ FDK+F T V+ Q +V ++ G N +FAYG T SGKT TM GII
Sbjct: 65 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGII 121
Query: 180 PLAVKDVFGIIQE--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLR---------IRED 228
P + +F I + T G ++ + ++EIYNE I DLL N IR D
Sbjct: 122 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHD 181
Query: 229 AQGTYVEGIKE-----------EVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIF 277
+ E++L A+ L A+ + H SSRSH+IF
Sbjct: 182 QETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHSIF 232
Query: 278 TLTIESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTV 336
+ + +G N + LNL+DLAGSE + ++ G R +E INKSL LG V
Sbjct: 233 IIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDV 288
Query: 337 ISKLTDEKAT--HIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHR 394
I L +T HIP+R+SKLT LLQ SL+G + + ++P+SS+ ET N+L+FA +
Sbjct: 289 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 348
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 147/300 (49%), Gaps = 41/300 (13%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGII 179
+ FDK+F T V+ Q +V ++ G N +FAYG T SGKT TM GII
Sbjct: 53 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGII 109
Query: 180 PLAVKDVFGIIQE--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLR---------IRED 228
P + +F I + T G ++ + ++EIYNE I DLL N IR D
Sbjct: 110 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHD 169
Query: 229 AQGTYVEGIKE-----------EVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIF 277
+ E++L A+ L A+ + H SSRSH+IF
Sbjct: 170 QETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHSIF 220
Query: 278 TLTIESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTV 336
+ + +G N + LNL+DLAGSE + ++ G R +E INKSL LG V
Sbjct: 221 IIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDV 276
Query: 337 ISKLTDEKAT--HIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHR 394
I L +T HIP+R+SKLT LLQ SL+G + + ++P+SS+ ET N+L+FA +
Sbjct: 277 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 336
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 146/300 (48%), Gaps = 41/300 (13%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGII 179
+ FDK+F T V+ Q +V ++ G N +FAYG T SGKT TM GII
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGII 110
Query: 180 PLAVKDVFGIIQE--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLR---------IRED 228
P + +F I + T G ++ + ++EIYNE I DLL N IR D
Sbjct: 111 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHD 170
Query: 229 AQGTYVEGIKE-----------EVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIF 277
+ E++L A+ L A+ + H SSRSH+IF
Sbjct: 171 QETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHSIF 221
Query: 278 TLTIESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTV 336
+ + +G N + LNL+DLAGS + ++ G R +E INKSL LG V
Sbjct: 222 IIHL----SGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDV 277
Query: 337 ISKLTDEKAT--HIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHR 394
I L +T HIP+R+SKLT LLQ SL+G + + ++P+SS+ ET N+L+FA +
Sbjct: 278 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 146/300 (48%), Gaps = 41/300 (13%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGII 179
+ FDK+F T V+ Q +V ++ G N +FAYG T SGKT TM GII
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGII 110
Query: 180 PLAVKDVFGIIQE--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLR---------IRED 228
P + +F I + T G ++ + ++EIYNE I DLL N IR D
Sbjct: 111 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHD 170
Query: 229 AQGTYVEGIKE-----------EVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIF 277
+ E++L A+ L A+ + H SSRSH+IF
Sbjct: 171 QETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHSIF 221
Query: 278 TLTIESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTV 336
+ + +G N + LNL+DLAGSE + ++ G R +E I KSL LG V
Sbjct: 222 IIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDV 277
Query: 337 ISKLTDEKAT--HIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHR 394
I L +T HIP+R+SKLT LLQ SL+G + + ++P+SS+ ET N+L+FA +
Sbjct: 278 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 146/300 (48%), Gaps = 41/300 (13%)
Query: 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGII 179
+ FDK+F T V+ Q +V ++ G N +FAYG T SGKT TM GII
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGII 110
Query: 180 PLAVKDVFGIIQE--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLR---------IRED 228
P + +F I + T G ++ + ++EIYNE I DLL N IR D
Sbjct: 111 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHD 170
Query: 229 AQGTYVEGIKE-----------EVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIF 277
+ E++L A+ L A+ + H SS SH+IF
Sbjct: 171 QETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSASHSIF 221
Query: 278 TLTIESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTV 336
+ + +G N + LNL+DLAGSE + ++ G R +E INKSL LG V
Sbjct: 222 IIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDV 277
Query: 337 ISKLTDEKAT--HIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHR 394
I L +T HIP+R+SKLT LLQ SL+G + + ++P+SS+ ET N+L+FA +
Sbjct: 278 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 159/341 (46%), Gaps = 35/341 (10%)
Query: 80 VMVTVRFRPLSPREVNKGD--------EIAWYAD-GDYTV-RNEYNPSIAYGFDKVFGPA 129
+ V VR RPLS E K D Y D Y V +Y + DKVF
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 130 TTTRHVYDVAAQH-VVNGAMQGINGTVFAYGVTSSGKTHTM-----HGEQKSPGIIPLAV 183
VY+ + +++ G + FAYG T SGKT+TM +G+ +PGI A
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 184 KDVFGIIQ-----ETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQGTYVEGIK 238
D+F + T G + +S+ EIY + DLL + + V+ +K
Sbjct: 122 GDIFTFLNIYDKDNTKG----IFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLK 177
Query: 239 EEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLS 298
VL+ + + G R +G N+ N SSRSH I + ++ ++ +L
Sbjct: 178 ILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDI-------NKNTSLG 230
Query: 299 QLNLIDLAGSESSKTETTGLRRK--EGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLT 356
++ IDLAGSE + ++ +G+ IN+SLL L I + +K HIP+RDS+LT
Sbjct: 231 KIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSELT 289
Query: 357 RLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKH 397
++L+ G + +I ++P S E+T NTL+++ R K+
Sbjct: 290 KVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 155/312 (49%), Gaps = 36/312 (11%)
Query: 103 YADGDYTV--RNEYNPSIAYGFDKVFGPATTTR-HVYDVAAQHVVNGAMQGINGTVFAYG 159
++DG + +NE++ FD F PAT ++ +Y +V+ ++G T AYG
Sbjct: 50 WSDGKSLIVDQNEFH------FDHAF-PATISQDEMYQALILPLVDKLLEGFQCTALAYG 102
Query: 160 VTSSGKTHTMH----GE--QKSPGIIPLAVKDVFGII---QETPGREFLLRVSYLEIYNE 210
T +GK+++M GE + GI+P A+ D+F + QE + S++EIYNE
Sbjct: 103 QTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNE 162
Query: 211 VINDLLDPTGQNLRIREDAQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLS 270
DLL T + Q + + L H L L G +R V N N S
Sbjct: 163 KPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLH--HILEL---GTRNRRVRPTNMNSNS 217
Query: 271 SRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSESSK-TETTGLRRKEGSYINKS 329
SRSH I T+ ++S S++N++DLAGSE + T G+ R+EG IN
Sbjct: 218 SRSHAIVTIHVKS----------KTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLG 267
Query: 330 LLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTL 389
LL++ V+ + T IPYRDS LT +LQ+SL+ ++ + ++P + ET +TL
Sbjct: 268 LLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTL 326
Query: 390 KFAHRSKHVEIK 401
+F +K + ++
Sbjct: 327 RFGTSAKKLRLE 338
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 152/307 (49%), Gaps = 36/307 (11%)
Query: 103 YADGDYTV--RNEYNPSIAYGFDKVFGPATTTR-HVYDVAAQHVVNGAMQGINGTVFAYG 159
++DG + +NE++ FD F PAT ++ +Y +V+ ++G T AYG
Sbjct: 50 WSDGKSLIVDQNEFH------FDHAF-PATISQDEMYQALILPLVDKLLEGFQCTALAYG 102
Query: 160 VTSSGKTHTMH----GE--QKSPGIIPLAVKDVFGII---QETPGREFLLRVSYLEIYNE 210
T +GK+++M GE + GI+P A+ D+F + QE + S++EIYNE
Sbjct: 103 QTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNE 162
Query: 211 VINDLLDPTGQNLRIREDAQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLS 270
DLL T + Q + + L H L L G +R V N N S
Sbjct: 163 KPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLH--HILEL---GTRNRRVRPTNMNSNS 217
Query: 271 SRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSESSK-TETTGLRRKEGSYINKS 329
SRSH I T+ ++S S++N++DLAGSE + T G+ R+EG IN
Sbjct: 218 SRSHAIVTIHVKS----------KTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLG 267
Query: 330 LLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTL 389
LL++ V+ + T IPYRDS LT +LQ+SL+ ++ + ++P + ET +TL
Sbjct: 268 LLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTL 326
Query: 390 KFAHRSK 396
+F +K
Sbjct: 327 RFGTSAK 333
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 52/80 (65%)
Query: 326 INKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEET 385
INKSL LG VIS L + TH+PYRDSK+TR+LQ SL G+ R +++ +P+ N ET
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 386 HNTLKFAHRSKHVEIKASQN 405
+TL F R+K ++ S N
Sbjct: 64 KSTLMFGQRAKTIKNTVSVN 83
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 327 NKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETH 386
NKSL LG VIS L + TH+PYRDSK+TR+LQ SL G+ R +++ +P+ N ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 387 NTLKFAHRSKHVEIKASQN 405
+TL F R+K ++ S N
Sbjct: 61 STLMFGQRAKTIKNTVSVN 79
>pdb|2OCX|A Chain A, Crystal Structure Of Se-Met Fucosyltransferase Nodz From
Bradyrhizobium
Length = 330
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 882 KLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKE 941
++ ERD L Q A E S A + A + R +EE RL + N KL SE+ A +
Sbjct: 103 QIFRERDELTELFQ--AREDSEANTIVCDACLXWR-CSEEAERLIFRNIKLRSEIRARID 159
Query: 942 ALSRSNFCQRS 952
AL +F S
Sbjct: 160 ALYEEHFSGHS 170
>pdb|1L0C|A Chain A, Investigation Of The Roles Of Catalytic Residues In
Serotonin N- Acetyltransferase
Length = 207
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 496 MPSSIPERPGHRRRHSFGEDELAYLPDRKREYIIDDDAGSYVSELSAEARDDIT-----N 550
+PS IP PG +RRH+ +E L +D AG V E+ EA ++ N
Sbjct: 16 LPSGIPGSPGRQRRHTLPANEFRCLTP-------EDAAG--VFEIEREAFISVSGNCPLN 66
Query: 551 LDELVKDYKKSRRRGMLGWF 570
LDE V+ + LGWF
Sbjct: 67 LDE-VQHFLTLCPELSLGWF 85
>pdb|1KUV|A Chain A, X-Ray Crystallographic Studies Of Serotonin
N-Acetyltransferase Catalysis And Inhibition
pdb|1KUX|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
pdb|1KUY|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
Length = 207
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 496 MPSSIPERPGHRRRHSFGEDELAYLPDRKREYIIDDDAGSYVSELSAEARDDIT-----N 550
+PS IP PG +RRH+ +E L +D AG V E+ EA ++ N
Sbjct: 16 LPSGIPGSPGRQRRHTLPANEFRCLTP-------EDAAG--VFEIEREAFISVSGNCPLN 66
Query: 551 LDELVKDYKKSRRRGMLGWF 570
LDE V+ + LGWF
Sbjct: 67 LDE-VQHFLTLCPELSLGWF 85
>pdb|2SAS|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Amphioxus Refined At 2.4 Angstroms Resolution
Length = 185
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 1060 KNGFMPSNPRSLKLSEEDDVCE-------NVDGVSSFEELSASYQTERRKCKELESLIS- 1111
K ++ +S++ S ED+ + N D V S+EE A ++ CK + L +
Sbjct: 43 KGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAW 102
Query: 1112 -------RLKGEDISGLDVAALEELQNF 1132
KG D+SG + LEE QN+
Sbjct: 103 CQNRIPFLFKGMDVSGDGIVDLEEFQNY 130
>pdb|2HHC|A Chain A, Crystal Structure Of Fucosyltransferase Nodz From
Bradyrhizobium
pdb|2HLH|A Chain A, Crystal Structure Of Fucosyltransferase Nodz From
Bradyrhizobium
pdb|3SIW|A Chain A, Crystal Structure Of Nodz Alpha-1,6-Fucosyltransferase
Co-Crystallized With Gdp
pdb|3SIX|A Chain A, Crystal Structure Of Nodz Alpha-1,6-Fucosyltransferase
Soaked With Gdp-Fucose
Length = 330
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 873 IENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKL 932
I+ + + ++ ERD L Q A E S A + A + R +EE RL + N KL
Sbjct: 94 IDCINRPDEQIFRERDELTELFQ--AREDSEANTIVCDACLMWR-CSEEAERLIFRNIKL 150
Query: 933 NSELAAAKEALSRSNFCQRS 952
SE+ A +AL +F S
Sbjct: 151 RSEIRARIDALYEEHFSGHS 170
>pdb|1IB1|E Chain E, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|F Chain F, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|G Chain G, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|H Chain H, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
Length = 200
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 496 MPSSIPERPGHRRRHSFGEDELAYLPDRKREYIIDDDAGSYVSELSAEARDDIT-----N 550
+PS IP PG +RRH +E L +D AG V E+ EA ++ N
Sbjct: 15 LPSGIPGSPGRQRRHXLPANEFRCLTP-------EDAAG--VFEIEREAFISVSGNCPLN 65
Query: 551 LDELVKDYKKSRRRGMLGWF 570
LDE V+ + LGWF
Sbjct: 66 LDE-VQHFLTLCPELSLGWF 84
>pdb|2WTY|A Chain A, Crystal Structure Of The Homodimeric Mafb In Complex With
The T-Mare Binding Site
pdb|2WTY|B Chain B, Crystal Structure Of The Homodimeric Mafb In Complex With
The T-Mare Binding Site
Length = 97
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 857 HEESNLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLA 898
H N +Q++ Q +E LKQE +L ERD ++ S+KLA
Sbjct: 55 HHLENEKTQLIQQ---VEQLKQEVSRLARERDAYKVKSEKLA 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,959,454
Number of Sequences: 62578
Number of extensions: 1148955
Number of successful extensions: 3699
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 3338
Number of HSP's gapped (non-prelim): 140
length of query: 1150
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1041
effective length of database: 8,152,335
effective search space: 8486580735
effective search space used: 8486580735
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)