Query 001118
Match_columns 1150
No_of_seqs 490 out of 2116
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 16:19:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 1.2E-90 2.7E-95 837.4 39.0 356 76-434 47-426 (1041)
2 KOG0242 Kinesin-like protein [ 100.0 2.4E-90 5.3E-95 831.1 31.1 591 77-796 5-609 (675)
3 KOG0245 Kinesin-like protein [ 100.0 7.2E-90 1.6E-94 816.3 33.9 357 77-434 3-383 (1221)
4 KOG4280 Kinesin-like protein [ 100.0 3E-89 6.4E-94 798.0 26.7 355 77-433 4-370 (574)
5 PLN03188 kinesin-12 family pro 100.0 4.6E-85 9.9E-90 794.8 42.0 353 75-435 95-469 (1320)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 5.7E-83 1.2E-87 729.4 33.9 344 76-423 5-356 (607)
7 KOG0241 Kinesin-like protein [ 100.0 8.9E-81 1.9E-85 724.9 34.7 399 77-482 3-428 (1714)
8 cd01373 KISc_KLP2_like Kinesin 100.0 5.9E-80 1.3E-84 693.6 34.2 318 78-398 1-337 (337)
9 cd01370 KISc_KIP3_like Kinesin 100.0 1.2E-79 2.6E-84 691.4 34.3 319 79-398 1-338 (338)
10 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3.3E-77 7.2E-82 675.4 35.0 328 78-405 1-356 (356)
11 cd01368 KISc_KIF23_like Kinesi 100.0 3.9E-77 8.5E-82 672.8 33.9 314 78-396 1-345 (345)
12 cd01374 KISc_CENP_E Kinesin mo 100.0 2.9E-75 6.3E-80 650.7 35.5 318 79-398 1-321 (321)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2E-75 4.2E-80 659.5 34.4 326 78-406 2-351 (352)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 2.5E-75 5.3E-80 654.8 34.2 320 78-398 1-333 (333)
15 cd01367 KISc_KIF2_like Kinesin 100.0 3E-75 6.4E-80 651.7 33.2 309 78-396 1-322 (322)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.2E-74 4.9E-79 644.2 34.7 317 78-398 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 5.4E-74 1.2E-78 640.6 33.8 309 79-396 1-319 (319)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 8E-74 1.7E-78 643.3 32.3 319 79-399 2-341 (341)
19 cd01375 KISc_KIF9_like Kinesin 100.0 6.9E-73 1.5E-77 635.5 32.8 312 79-396 1-334 (334)
20 cd01366 KISc_C_terminal Kinesi 100.0 1.1E-71 2.4E-76 623.1 34.9 318 77-400 1-328 (329)
21 smart00129 KISc Kinesin motor, 100.0 4.9E-70 1.1E-74 610.5 35.4 325 79-405 1-335 (335)
22 KOG0239 Kinesin (KAR3 subfamil 100.0 1.7E-71 3.6E-76 666.6 23.9 325 76-406 312-648 (670)
23 cd00106 KISc Kinesin motor dom 100.0 6E-69 1.3E-73 599.2 35.2 315 79-396 1-328 (328)
24 PF00225 Kinesin: Kinesin moto 100.0 2.3E-70 5.1E-75 612.2 19.4 314 85-398 1-335 (335)
25 KOG0246 Kinesin-like protein [ 100.0 8.9E-68 1.9E-72 602.6 29.5 319 76-403 206-546 (676)
26 KOG0247 Kinesin-like protein [ 100.0 3E-66 6.5E-71 603.5 34.7 328 74-405 27-443 (809)
27 KOG0244 Kinesin-like protein [ 100.0 1.1E-65 2.4E-70 613.3 31.8 339 86-431 1-349 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 2.9E-61 6.3E-66 573.6 30.9 342 75-426 19-364 (568)
29 cd01363 Motor_domain Myosin an 100.0 6.1E-49 1.3E-53 408.0 18.8 178 135-377 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 97.6 5.2E-07 1.1E-11 109.8 -11.7 245 78-341 305-566 (568)
31 TIGR02169 SMC_prok_A chromosom 96.9 0.43 9.4E-06 62.6 29.9 44 991-1034 459-502 (1164)
32 PF07888 CALCOCO1: Calcium bin 96.3 1.4 2.9E-05 54.3 26.1 49 977-1028 414-462 (546)
33 TIGR02169 SMC_prok_A chromosom 96.1 4.1 9E-05 53.7 31.3 14 156-169 27-40 (1164)
34 TIGR00606 rad50 rad50. This fa 96.1 1.5 3.2E-05 59.5 27.6 82 704-796 796-877 (1311)
35 PF09726 Macoilin: Transmembra 96.0 0.35 7.6E-06 61.2 19.6 24 700-723 552-575 (697)
36 TIGR02168 SMC_prok_B chromosom 95.7 3.7 7.9E-05 54.0 28.2 16 154-169 25-40 (1179)
37 PF09730 BicD: Microtubule-ass 95.7 9.3 0.0002 48.9 30.1 188 657-926 263-460 (717)
38 TIGR02168 SMC_prok_B chromosom 95.7 5 0.00011 52.7 29.2 7 564-570 570-576 (1179)
39 PRK11637 AmiB activator; Provi 95.7 0.28 6.1E-06 58.4 16.4 90 696-798 43-132 (428)
40 KOG0239 Kinesin (KAR3 subfamil 95.6 0.0029 6.4E-08 78.8 -0.4 298 116-494 24-322 (670)
41 PF04849 HAP1_N: HAP1 N-termin 95.5 0.6 1.3E-05 53.6 17.3 136 858-1014 161-296 (306)
42 PRK02224 chromosome segregatio 95.1 6.7 0.00014 50.9 27.3 134 657-797 417-558 (880)
43 PHA02562 46 endonuclease subun 94.5 1 2.2E-05 55.0 17.0 70 656-727 178-247 (562)
44 KOG4674 Uncharacterized conser 94.4 7.1 0.00015 53.9 25.3 253 657-1009 1104-1389(1822)
45 COG1196 Smc Chromosome segrega 94.0 18 0.00039 48.9 28.1 97 912-1026 403-499 (1163)
46 PRK02224 chromosome segregatio 93.8 13 0.00028 48.4 25.5 32 1004-1035 415-446 (880)
47 PF09726 Macoilin: Transmembra 93.7 6.7 0.00015 50.1 22.1 101 893-1018 515-632 (697)
48 KOG1924 RhoA GTPase effector D 93.1 0.34 7.3E-06 60.6 9.2 6 132-137 655-660 (1102)
49 PF00038 Filament: Intermediat 93.0 20 0.00043 40.8 24.9 57 975-1034 225-281 (312)
50 KOG4360 Uncharacterized coiled 92.9 2.2 4.7E-05 51.7 15.0 121 869-1014 171-295 (596)
51 KOG0161 Myosin class II heavy 92.6 15 0.00032 51.6 24.0 148 870-1035 1216-1363(1930)
52 PHA02562 46 endonuclease subun 92.4 21 0.00046 43.8 23.5 34 762-795 213-246 (562)
53 PRK09039 hypothetical protein; 92.4 9.9 0.00021 44.7 19.6 52 704-796 43-94 (343)
54 TIGR00606 rad50 rad50. This fa 91.8 19 0.0004 49.3 23.8 114 672-795 798-914 (1311)
55 PRK06893 DNA replication initi 91.3 0.16 3.4E-06 55.5 3.3 47 118-170 11-57 (229)
56 KOG4674 Uncharacterized conser 91.3 27 0.00058 48.7 23.9 111 668-794 828-944 (1822)
57 KOG0161 Myosin class II heavy 91.2 60 0.0013 46.1 27.3 34 134-168 150-184 (1930)
58 COG1196 Smc Chromosome segrega 91.1 45 0.00097 45.2 26.1 25 142-169 17-41 (1163)
59 KOG0612 Rho-associated, coiled 91.0 38 0.00081 45.5 23.7 80 862-941 572-651 (1317)
60 PF09730 BicD: Microtubule-ass 90.5 65 0.0014 41.6 26.1 90 653-748 28-118 (717)
61 PRK14086 dnaA chromosomal repl 90.4 0.91 2E-05 56.7 9.0 49 119-170 284-332 (617)
62 COG0556 UvrB Helicase subunit 90.3 0.51 1.1E-05 57.5 6.4 88 119-211 4-99 (663)
63 PF05701 WEMBL: Weak chloropla 90.3 57 0.0012 40.6 24.9 35 766-800 120-154 (522)
64 PF00308 Bac_DnaA: Bacterial d 90.2 0.12 2.6E-06 56.3 1.1 49 119-170 4-52 (219)
65 COG4942 Membrane-bound metallo 90.1 9.5 0.00021 45.9 16.5 63 879-945 200-263 (420)
66 PF15070 GOLGA2L5: Putative go 89.9 67 0.0014 40.9 24.6 106 908-1028 281-387 (617)
67 KOG4673 Transcription factor T 89.9 11 0.00023 47.5 16.9 264 699-1023 345-634 (961)
68 PRK04863 mukB cell division pr 89.9 48 0.001 46.1 24.8 155 864-1036 449-617 (1486)
69 PF14662 CCDC155: Coiled-coil 89.0 17 0.00037 39.6 15.9 59 870-942 66-124 (193)
70 PRK03918 chromosome segregatio 89.0 86 0.0019 40.8 29.1 14 156-169 27-40 (880)
71 KOG0976 Rho/Rac1-interacting s 88.7 47 0.001 42.8 21.2 33 767-799 181-213 (1265)
72 COG2805 PilT Tfp pilus assembl 88.2 0.26 5.6E-06 56.6 1.9 31 140-170 113-143 (353)
73 PRK11637 AmiB activator; Provi 88.1 31 0.00067 41.5 19.3 29 767-795 45-73 (428)
74 PRK09039 hypothetical protein; 88.1 13 0.00028 43.7 15.7 42 975-1016 139-180 (343)
75 COG3883 Uncharacterized protei 87.7 19 0.00041 41.1 15.9 47 860-917 186-232 (265)
76 PF12128 DUF3584: Protein of u 87.4 1.3E+02 0.0028 41.2 27.5 73 870-942 606-678 (1201)
77 PF15035 Rootletin: Ciliary ro 87.4 2.9 6.3E-05 45.0 9.1 95 701-795 17-114 (182)
78 COG2804 PulE Type II secretory 87.2 0.54 1.2E-05 57.1 3.9 30 141-170 247-276 (500)
79 PRK06620 hypothetical protein; 86.7 0.3 6.4E-06 53.2 1.3 49 118-170 11-62 (214)
80 KOG0963 Transcription factor/C 85.6 73 0.0016 40.2 20.4 91 698-797 180-270 (629)
81 PRK05642 DNA replication initi 85.6 0.58 1.3E-05 51.4 2.8 46 118-170 14-63 (234)
82 PRK06526 transposase; Provisio 84.6 0.36 7.8E-06 54.0 0.7 45 122-171 73-117 (254)
83 PRK03918 chromosome segregatio 84.3 1.5E+02 0.0031 38.8 29.2 23 771-793 520-542 (880)
84 PRK12377 putative replication 83.6 0.75 1.6E-05 51.4 2.6 49 120-170 71-119 (248)
85 PRK08084 DNA replication initi 83.2 0.76 1.7E-05 50.5 2.5 47 118-170 17-63 (235)
86 PRK14087 dnaA chromosomal repl 83.2 0.67 1.4E-05 55.9 2.2 49 119-170 111-159 (450)
87 PRK09087 hypothetical protein; 83.1 0.62 1.3E-05 51.1 1.7 47 118-170 16-62 (226)
88 TIGR02928 orc1/cdc6 family rep 82.8 0.91 2E-05 52.1 3.0 39 131-170 19-58 (365)
89 PRK14088 dnaA chromosomal repl 82.7 0.66 1.4E-05 55.8 1.9 49 118-170 100-148 (440)
90 PF07888 CALCOCO1: Calcium bin 82.6 1.4E+02 0.0031 37.5 23.9 28 696-723 167-194 (546)
91 COG1474 CDC6 Cdc6-related prot 82.6 1.7 3.7E-05 51.2 5.2 27 144-170 33-60 (366)
92 PF04849 HAP1_N: HAP1 N-termin 82.5 64 0.0014 37.7 17.3 83 696-794 163-245 (306)
93 KOG0980 Actin-binding protein 82.2 1.8E+02 0.0039 38.3 23.8 128 863-1012 416-551 (980)
94 PRK00411 cdc6 cell division co 81.9 1 2.3E-05 52.3 3.1 38 132-170 35-73 (394)
95 PF04851 ResIII: Type III rest 81.9 0.8 1.7E-05 46.2 1.9 29 142-170 14-43 (184)
96 PRK08116 hypothetical protein; 81.7 0.91 2E-05 51.1 2.4 50 119-170 81-132 (268)
97 PRK04863 mukB cell division pr 81.2 1.3E+02 0.0029 42.1 22.4 49 989-1037 553-601 (1486)
98 cd00009 AAA The AAA+ (ATPases 81.2 1.1 2.4E-05 42.5 2.5 28 143-170 10-37 (151)
99 TIGR03420 DnaA_homol_Hda DnaA 80.5 1.5 3.4E-05 46.7 3.6 47 118-170 10-56 (226)
100 KOG0250 DNA repair protein RAD 80.4 53 0.0012 43.7 17.3 175 657-911 253-441 (1074)
101 PRK08181 transposase; Validate 79.9 1.4 3.1E-05 49.8 3.2 45 122-171 80-125 (269)
102 TIGR00362 DnaA chromosomal rep 79.8 1.1 2.4E-05 52.9 2.3 50 118-170 105-154 (405)
103 PRK00149 dnaA chromosomal repl 79.6 1.1 2.4E-05 53.8 2.3 49 119-170 118-166 (450)
104 PRK04778 septation ring format 79.6 1.8E+02 0.0039 36.6 27.4 102 914-1037 311-412 (569)
105 PF09738 DUF2051: Double stran 79.5 13 0.00027 43.2 10.5 132 654-795 107-245 (302)
106 COG1579 Zn-ribbon protein, pos 78.9 50 0.0011 37.3 14.5 146 870-1038 9-158 (239)
107 PRK07952 DNA replication prote 78.6 1.4 3.1E-05 49.2 2.7 50 119-170 68-117 (244)
108 PRK08939 primosomal protein Dn 78.3 1 2.2E-05 51.9 1.4 50 120-170 124-174 (306)
109 TIGR02538 type_IV_pilB type IV 78.3 2.5 5.4E-05 52.6 4.8 28 143-170 307-334 (564)
110 KOG0971 Microtubule-associated 78.2 1.6E+02 0.0034 39.0 19.7 88 658-759 367-462 (1243)
111 COG4942 Membrane-bound metallo 78.0 1.7E+02 0.0038 35.6 19.6 52 977-1028 186-244 (420)
112 PRK08727 hypothetical protein; 78.0 1.5 3.2E-05 48.2 2.5 44 119-170 15-59 (233)
113 KOG0995 Centromere-associated 77.8 2E+02 0.0044 36.2 23.0 96 663-792 225-324 (581)
114 PRK08903 DnaA regulatory inact 77.5 2.1 4.6E-05 46.1 3.5 49 117-170 12-60 (227)
115 KOG0946 ER-Golgi vesicle-tethe 77.4 33 0.00072 44.2 13.8 29 772-800 802-830 (970)
116 PF05673 DUF815: Protein of un 77.0 1.9 4.2E-05 48.4 3.0 124 120-277 24-155 (249)
117 TIGR03185 DNA_S_dndD DNA sulfu 76.7 2.3E+02 0.0049 36.2 22.7 107 659-773 216-327 (650)
118 cd00046 DEXDc DEAD-like helica 75.5 1.1 2.3E-05 42.2 0.5 16 155-170 3-18 (144)
119 KOG0250 DNA repair protein RAD 75.5 3.1E+02 0.0066 37.1 28.8 39 974-1012 865-903 (1074)
120 PRK10436 hypothetical protein; 75.2 2.6 5.7E-05 51.2 3.8 28 143-170 209-236 (462)
121 COG0419 SbcC ATPase involved i 74.7 3E+02 0.0064 36.6 24.5 63 662-724 270-332 (908)
122 KOG0977 Nuclear envelope prote 74.5 1.7E+02 0.0037 36.8 18.6 104 681-799 96-199 (546)
123 PRK13169 DNA replication intia 74.4 3.5 7.5E-05 41.2 3.7 40 861-900 12-51 (110)
124 PTZ00454 26S protease regulato 73.8 1.8 3.8E-05 51.6 1.9 51 119-169 141-196 (398)
125 PRK03992 proteasome-activating 73.7 2.1 4.6E-05 50.6 2.5 50 120-169 128-182 (389)
126 PF06120 Phage_HK97_TLTM: Tail 73.6 39 0.00085 39.3 12.4 117 656-794 52-173 (301)
127 TIGR01242 26Sp45 26S proteasom 73.3 3 6.6E-05 48.6 3.6 51 120-170 119-174 (364)
128 KOG0946 ER-Golgi vesicle-tethe 73.3 3.1E+02 0.0066 36.1 21.4 79 863-941 805-899 (970)
129 PRK01297 ATP-dependent RNA hel 73.1 4.5 9.8E-05 48.8 5.1 26 142-169 116-141 (475)
130 PF13514 AAA_27: AAA domain 72.4 3.5E+02 0.0076 36.9 22.5 34 910-943 893-926 (1111)
131 PRK06835 DNA replication prote 72.2 2.4 5.2E-05 49.4 2.4 30 140-170 172-201 (329)
132 PRK06921 hypothetical protein; 71.9 2.5 5.4E-05 47.6 2.4 32 139-170 101-135 (266)
133 PF10174 Cast: RIM-binding pro 71.7 3.3E+02 0.0072 35.9 25.3 68 869-939 526-593 (775)
134 KOG0249 LAR-interacting protei 71.7 1.3E+02 0.0029 38.6 16.7 136 877-1036 117-258 (916)
135 smart00382 AAA ATPases associa 71.3 1.5 3.3E-05 40.9 0.4 18 153-170 3-20 (148)
136 PF06156 DUF972: Protein of un 71.1 4.7 0.0001 40.0 3.7 40 861-900 12-51 (107)
137 PF04111 APG6: Autophagy prote 70.5 14 0.00029 43.0 7.9 123 660-795 10-132 (314)
138 PRK10884 SH3 domain-containing 70.4 17 0.00037 39.9 8.3 76 410-485 91-166 (206)
139 PF13401 AAA_22: AAA domain; P 70.4 1.3 2.9E-05 42.8 -0.1 19 152-170 4-22 (131)
140 PF00270 DEAD: DEAD/DEAH box h 70.4 2 4.4E-05 43.1 1.1 25 144-170 8-32 (169)
141 PF05667 DUF812: Protein of un 70.2 3.1E+02 0.0068 35.0 21.3 26 767-792 319-344 (594)
142 COG0593 DnaA ATPase involved i 70.1 2.5 5.3E-05 50.7 1.9 50 118-170 82-131 (408)
143 PF09789 DUF2353: Uncharacteri 70.0 1.2E+02 0.0026 35.7 15.2 32 767-798 152-183 (319)
144 PF13245 AAA_19: Part of AAA d 70.0 2.2 4.8E-05 39.3 1.2 26 144-170 3-28 (76)
145 KOG0977 Nuclear envelope prote 69.9 61 0.0013 40.6 13.5 74 870-943 41-143 (546)
146 PF01935 DUF87: Domain of unkn 69.8 1.6 3.5E-05 47.0 0.3 17 154-170 25-41 (229)
147 TIGR02533 type_II_gspE general 69.8 2.3 5.1E-05 51.9 1.7 28 143-170 233-260 (486)
148 PF15450 DUF4631: Domain of un 69.4 23 0.0005 43.6 9.7 134 656-798 334-470 (531)
149 PTZ00112 origin recognition co 69.3 3.7 8E-05 53.4 3.3 22 149-170 778-799 (1164)
150 PF07462 MSP1_C: Merozoite sur 69.3 30 0.00065 42.8 10.5 26 120-147 371-396 (574)
151 PTZ00361 26 proteosome regulat 69.2 4 8.7E-05 49.4 3.4 89 81-169 128-234 (438)
152 PF10211 Ax_dynein_light: Axon 69.2 19 0.00041 39.0 8.2 65 873-937 122-187 (189)
153 PF12846 AAA_10: AAA-like doma 68.4 1.9 4E-05 47.3 0.4 19 152-170 1-19 (304)
154 TIGR03015 pepcterm_ATPase puta 68.1 3.8 8.3E-05 44.9 2.8 26 145-170 36-61 (269)
155 TIGR01420 pilT_fam pilus retra 67.6 2.7 5.8E-05 48.9 1.5 27 144-170 114-140 (343)
156 COG1484 DnaC DNA replication p 67.5 4.1 8.9E-05 45.7 2.9 49 119-170 75-123 (254)
157 KOG0996 Structural maintenance 67.4 2.4E+02 0.0052 38.4 18.3 211 897-1142 424-641 (1293)
158 PF14988 DUF4515: Domain of un 67.3 99 0.0021 34.1 13.2 130 655-797 43-198 (206)
159 cd01131 PilT Pilus retraction 67.1 2.1 4.6E-05 45.8 0.5 19 152-170 1-19 (198)
160 TIGR02525 plasmid_TraJ plasmid 66.7 3 6.6E-05 49.4 1.7 20 151-170 148-167 (372)
161 PF14362 DUF4407: Domain of un 66.5 45 0.00097 38.1 11.0 51 899-949 121-171 (301)
162 PF13604 AAA_30: AAA domain; P 66.2 3.1 6.7E-05 44.6 1.5 28 143-170 9-36 (196)
163 PF00437 T2SE: Type II/IV secr 66.0 2.1 4.6E-05 47.5 0.2 19 152-170 127-145 (270)
164 KOG0989 Replication factor C, 65.8 4.5 9.8E-05 46.9 2.8 36 135-170 39-75 (346)
165 PRK09183 transposase/IS protei 65.4 3.1 6.7E-05 46.7 1.4 44 122-170 77-120 (259)
166 PF01695 IstB_IS21: IstB-like 65.3 4.1 9E-05 43.2 2.3 19 152-170 47-65 (178)
167 TIGR00631 uvrb excinuclease AB 65.2 5.6 0.00012 50.4 3.8 88 120-212 2-97 (655)
168 TIGR02524 dot_icm_DotB Dot/Icm 64.8 3.3 7.2E-05 48.7 1.6 20 151-170 133-152 (358)
169 PF12325 TMF_TATA_bd: TATA ele 64.7 73 0.0016 32.5 10.7 64 916-1015 47-110 (120)
170 KOG0243 Kinesin-like protein [ 64.1 1.1E+02 0.0025 40.8 14.8 196 771-1038 399-594 (1041)
171 PF01486 K-box: K-box region; 63.9 11 0.00023 36.5 4.6 58 1087-1144 12-69 (100)
172 PF01637 Arch_ATPase: Archaeal 63.8 3.5 7.7E-05 43.2 1.4 30 141-170 9-38 (234)
173 PRK10884 SH3 domain-containing 63.6 43 0.00092 37.0 9.6 76 865-943 94-169 (206)
174 PF10267 Tmemb_cc2: Predicted 63.4 3.5E+02 0.0075 33.0 24.2 89 658-757 211-303 (395)
175 PF00038 Filament: Intermediat 63.0 1.8E+02 0.0039 33.2 14.9 127 871-1036 4-138 (312)
176 KOG0933 Structural maintenance 62.5 2.7E+02 0.0058 37.4 17.3 22 776-797 822-843 (1174)
177 PF05970 PIF1: PIF1-like helic 62.4 5 0.00011 47.1 2.4 37 129-169 3-39 (364)
178 PF14282 FlxA: FlxA-like prote 62.1 40 0.00088 33.3 8.3 65 654-727 14-78 (106)
179 cd01129 PulE-GspE PulE/GspE Th 62.0 4.1 8.8E-05 45.9 1.6 27 144-170 72-98 (264)
180 PF10186 Atg14: UV radiation r 62.0 1.7E+02 0.0038 32.6 14.4 69 873-941 22-91 (302)
181 PF02388 FemAB: FemAB family; 62.0 61 0.0013 38.9 11.4 118 316-493 184-301 (406)
182 KOG4673 Transcription factor T 61.8 76 0.0016 40.5 12.0 62 916-1013 883-944 (961)
183 PF07106 TBPIP: Tat binding pr 61.6 31 0.00067 36.3 7.9 62 656-721 76-137 (169)
184 KOG0996 Structural maintenance 61.0 6E+02 0.013 35.0 23.8 53 970-1022 1059-1117(1293)
185 PRK12402 replication factor C 60.4 6 0.00013 44.7 2.6 42 121-170 13-54 (337)
186 PLN03229 acetyl-coenzyme A car 60.3 84 0.0018 40.6 12.4 99 693-799 597-735 (762)
187 PRK12422 chromosomal replicati 60.1 5.8 0.00013 48.0 2.5 50 118-170 106-159 (445)
188 PF12325 TMF_TATA_bd: TATA ele 59.8 58 0.0012 33.2 9.0 105 653-794 10-114 (120)
189 COG5008 PilU Tfp pilus assembl 59.8 6.1 0.00013 45.2 2.4 31 140-170 115-145 (375)
190 TIGR02782 TrbB_P P-type conjug 59.8 3.9 8.5E-05 46.9 1.0 28 142-170 123-150 (299)
191 PF13086 AAA_11: AAA domain; P 59.7 4.2 9.2E-05 42.6 1.1 26 144-170 10-35 (236)
192 PF06818 Fez1: Fez1; InterPro 59.5 1.4E+02 0.003 33.2 12.3 44 745-788 35-78 (202)
193 PF00004 AAA: ATPase family as 59.5 3.1 6.8E-05 39.9 0.1 15 155-169 1-15 (132)
194 PF03915 AIP3: Actin interacti 59.4 71 0.0015 38.9 11.2 127 655-792 81-236 (424)
195 PF06048 DUF927: Domain of unk 59.0 8.1 0.00018 43.9 3.3 37 137-174 179-221 (286)
196 PLN00020 ribulose bisphosphate 58.7 7.8 0.00017 46.3 3.1 51 118-168 110-164 (413)
197 PF13479 AAA_24: AAA domain 58.4 4.3 9.2E-05 44.0 0.9 20 152-171 3-22 (213)
198 PRK13894 conjugal transfer ATP 58.0 4.7 0.0001 46.8 1.2 28 142-170 139-166 (319)
199 PF15619 Lebercilin: Ciliary p 57.9 1.4E+02 0.003 32.8 12.2 107 658-794 81-189 (194)
200 PRK11281 hypothetical protein; 57.6 1.8E+02 0.0039 39.7 15.4 117 652-783 36-156 (1113)
201 PHA02544 44 clamp loader, smal 57.3 6 0.00013 44.7 1.9 22 149-170 39-61 (316)
202 smart00487 DEXDc DEAD-like hel 57.0 6.4 0.00014 39.4 1.8 25 145-170 18-42 (201)
203 PHA00729 NTP-binding motif con 56.7 8.4 0.00018 42.9 2.8 31 140-170 5-35 (226)
204 PF05667 DUF812: Protein of un 56.7 5.3E+02 0.012 33.0 19.3 62 867-942 324-385 (594)
205 PF06005 DUF904: Protein of un 56.4 13 0.00028 34.5 3.5 31 870-900 24-54 (72)
206 COG1201 Lhr Lhr-like helicases 56.0 13 0.00027 48.4 4.6 100 144-254 31-140 (814)
207 PF13191 AAA_16: AAA ATPase do 55.6 3.8 8.3E-05 41.7 -0.0 28 143-170 15-42 (185)
208 PF00448 SRP54: SRP54-type pro 55.4 4.1 8.9E-05 43.9 0.2 17 154-170 3-19 (196)
209 PF05701 WEMBL: Weak chloropla 54.7 5.3E+02 0.011 32.3 19.8 52 872-923 352-403 (522)
210 smart00763 AAA_PrkA PrkA AAA d 54.4 22 0.00048 42.3 5.9 62 122-188 49-142 (361)
211 KOG0972 Huntingtin interacting 54.3 44 0.00096 38.6 7.9 70 655-751 283-355 (384)
212 PF13207 AAA_17: AAA domain; P 54.0 5.5 0.00012 38.2 0.7 16 154-169 1-16 (121)
213 PF02403 Seryl_tRNA_N: Seryl-t 53.5 59 0.0013 31.6 7.7 66 656-731 40-105 (108)
214 PRK12723 flagellar biosynthesi 52.9 11 0.00023 45.1 3.1 19 152-170 174-192 (388)
215 PRK10929 putative mechanosensi 52.7 5.8E+02 0.013 35.1 18.7 33 910-942 269-301 (1109)
216 PF00580 UvrD-helicase: UvrD/R 52.6 5.5 0.00012 44.0 0.6 20 151-170 12-31 (315)
217 TIGR03499 FlhF flagellar biosy 52.2 12 0.00026 42.5 3.2 17 154-170 196-212 (282)
218 KOG0612 Rho-associated, coiled 52.2 8.3E+02 0.018 33.9 25.6 61 656-722 462-530 (1317)
219 PF10186 Atg14: UV radiation r 52.2 3.5E+02 0.0076 30.2 14.7 27 702-728 22-48 (302)
220 KOG0727 26S proteasome regulat 52.1 12 0.00025 42.7 3.0 72 122-193 154-247 (408)
221 PF06160 EzrA: Septation ring 51.9 6E+02 0.013 32.1 21.1 110 905-1036 296-407 (560)
222 COG3883 Uncharacterized protei 51.0 4.5E+02 0.0097 30.4 16.8 116 764-935 26-146 (265)
223 PF05622 HOOK: HOOK protein; 50.9 5.1 0.00011 51.1 0.0 123 655-790 294-419 (713)
224 PF10481 CENP-F_N: Cenp-F N-te 50.8 4.6E+02 0.01 30.5 16.2 34 869-902 58-91 (307)
225 cd00268 DEADc DEAD-box helicas 50.6 9.6 0.00021 39.9 2.0 23 144-168 30-52 (203)
226 KOG1923 Rac1 GTPase effector F 50.5 40 0.00087 43.2 7.4 9 301-309 535-543 (830)
227 PF02562 PhoH: PhoH-like prote 50.4 9.9 0.00021 41.7 2.1 20 151-170 18-37 (205)
228 KOG0933 Structural maintenance 50.3 8.2E+02 0.018 33.3 20.9 80 704-795 681-760 (1174)
229 cd01130 VirB11-like_ATPase Typ 50.2 9.4 0.0002 40.3 1.9 28 142-170 16-43 (186)
230 PF14662 CCDC155: Coiled-coil 50.0 53 0.0011 36.0 7.3 107 378-485 2-108 (193)
231 PF04111 APG6: Autophagy prote 49.7 1.8E+02 0.004 34.0 12.2 44 1004-1047 102-145 (314)
232 PF01580 FtsK_SpoIIIE: FtsK/Sp 49.2 5.5 0.00012 42.3 -0.1 17 154-170 40-56 (205)
233 PF07693 KAP_NTPase: KAP famil 49.1 11 0.00024 42.5 2.4 20 150-169 18-37 (325)
234 TIGR03007 pepcterm_ChnLen poly 49.1 4E+02 0.0087 32.5 15.6 27 767-793 209-235 (498)
235 PRK13833 conjugal transfer pro 49.1 8.1 0.00018 45.1 1.2 28 142-170 135-162 (323)
236 PTZ00424 helicase 45; Provisio 49.1 8.7 0.00019 44.8 1.5 25 143-169 58-82 (401)
237 smart00053 DYNc Dynamin, GTPas 48.7 22 0.00048 39.8 4.5 53 241-310 85-137 (240)
238 COG4962 CpaF Flp pilus assembl 48.5 9.6 0.00021 44.9 1.7 28 142-170 164-191 (355)
239 PF14197 Cep57_CLD_2: Centroso 48.4 64 0.0014 29.8 6.6 65 704-795 2-66 (69)
240 PRK11776 ATP-dependent RNA hel 47.9 10 0.00022 45.5 1.9 24 144-169 35-58 (460)
241 PF00910 RNA_helicase: RNA hel 47.5 5.7 0.00012 38.4 -0.2 26 155-190 1-26 (107)
242 PRK06547 hypothetical protein; 47.2 15 0.00033 38.8 2.9 28 142-169 5-32 (172)
243 PF13671 AAA_33: AAA domain; P 47.0 7.6 0.00016 38.2 0.5 15 155-169 2-16 (143)
244 PF06818 Fez1: Fez1; InterPro 46.6 98 0.0021 34.3 8.8 47 743-796 54-100 (202)
245 PF00769 ERM: Ezrin/radixin/mo 46.6 2.1E+02 0.0046 32.3 11.7 67 875-941 51-117 (246)
246 PRK13900 type IV secretion sys 46.5 10 0.00022 44.2 1.6 28 142-170 151-178 (332)
247 PF08614 ATG16: Autophagy prot 46.4 49 0.0011 35.7 6.6 54 743-796 125-178 (194)
248 COG1222 RPT1 ATP-dependent 26S 46.2 17 0.00037 43.2 3.2 90 78-167 93-200 (406)
249 CHL00081 chlI Mg-protoporyphyr 46.2 8.7 0.00019 45.3 0.9 43 119-169 13-55 (350)
250 PF07728 AAA_5: AAA domain (dy 46.1 6.6 0.00014 38.9 -0.1 15 155-169 2-16 (139)
251 PF07724 AAA_2: AAA domain (Cd 45.8 8.6 0.00019 40.6 0.7 17 153-169 4-20 (171)
252 PRK04325 hypothetical protein; 45.6 47 0.001 30.9 5.4 54 659-725 2-55 (74)
253 PF00063 Myosin_head: Myosin h 45.5 13 0.00029 47.1 2.5 39 132-170 65-103 (689)
254 PRK15422 septal ring assembly 45.0 25 0.00053 33.4 3.4 32 870-901 24-62 (79)
255 TIGR02881 spore_V_K stage V sp 44.9 19 0.0004 40.2 3.2 19 152-170 42-60 (261)
256 PLN03025 replication factor C 44.9 13 0.00029 42.5 2.2 18 153-170 35-52 (319)
257 PF13238 AAA_18: AAA domain; P 44.7 8.7 0.00019 36.7 0.5 16 155-170 1-16 (129)
258 PRK13851 type IV secretion sys 44.5 8.4 0.00018 45.3 0.5 28 142-170 153-180 (344)
259 PRK11192 ATP-dependent RNA hel 44.5 12 0.00026 44.4 1.8 25 143-169 31-55 (434)
260 PF13851 GAS: Growth-arrest sp 44.3 1.7E+02 0.0037 32.1 10.3 67 868-942 104-172 (201)
261 PRK13764 ATPase; Provisional 44.1 11 0.00023 47.5 1.3 20 151-170 256-275 (602)
262 PF03215 Rad17: Rad17 cell cyc 44.0 13 0.00028 46.1 2.0 31 140-170 31-63 (519)
263 PRK10929 putative mechanosensi 43.7 2.7E+02 0.0058 38.1 13.8 37 760-796 100-136 (1109)
264 TIGR00635 ruvB Holliday juncti 43.4 16 0.00036 41.0 2.6 41 129-170 6-48 (305)
265 PF07106 TBPIP: Tat binding pr 43.4 2.2E+02 0.0048 30.0 10.7 63 653-724 15-96 (169)
266 PF10359 Fmp27_WPPW: RNA pol I 43.3 56 0.0012 40.1 7.1 65 656-724 160-224 (475)
267 PF10458 Val_tRNA-synt_C: Valy 43.0 96 0.0021 28.0 6.9 29 410-438 2-30 (66)
268 COG1223 Predicted ATPase (AAA+ 43.0 9.7 0.00021 43.6 0.6 18 152-169 151-168 (368)
269 PF05557 MAD: Mitotic checkpoi 42.9 38 0.00083 43.5 5.9 27 912-938 509-535 (722)
270 PRK13342 recombination factor 42.8 11 0.00024 44.9 1.1 23 148-170 32-54 (413)
271 TIGR01241 FtsH_fam ATP-depende 42.2 8.5 0.00018 46.9 0.0 51 119-170 51-106 (495)
272 PF06785 UPF0242: Uncharacteri 42.2 5.1E+02 0.011 31.0 13.8 143 740-941 129-271 (401)
273 PF06414 Zeta_toxin: Zeta toxi 42.0 10 0.00023 40.3 0.7 20 151-170 14-33 (199)
274 PRK04837 ATP-dependent RNA hel 41.7 14 0.0003 43.9 1.7 25 143-169 38-62 (423)
275 KOG0018 Structural maintenance 41.6 7.2E+02 0.016 33.9 16.5 43 896-938 853-895 (1141)
276 PRK00440 rfc replication facto 41.4 18 0.0004 40.5 2.5 22 149-170 35-56 (319)
277 PRK11281 hypothetical protein; 41.1 1.1E+03 0.024 32.7 18.7 126 661-792 82-215 (1113)
278 PF06309 Torsin: Torsin; Inte 41.1 13 0.00027 38.2 1.0 25 155-189 56-80 (127)
279 PF07462 MSP1_C: Merozoite sur 41.1 73 0.0016 39.7 7.5 11 208-218 399-409 (574)
280 KOG1923 Rac1 GTPase effector F 41.0 94 0.002 40.2 8.5 11 869-879 767-777 (830)
281 COG2433 Uncharacterized conser 41.0 90 0.0019 39.5 8.2 36 979-1014 473-508 (652)
282 TIGR00348 hsdR type I site-spe 40.7 18 0.0004 46.0 2.7 31 139-170 246-281 (667)
283 PRK14722 flhF flagellar biosyn 40.5 11 0.00024 44.8 0.7 19 152-170 137-155 (374)
284 PRK10590 ATP-dependent RNA hel 40.1 16 0.00036 43.9 2.0 25 143-169 31-55 (456)
285 PHA02244 ATPase-like protein 39.9 25 0.00055 42.1 3.4 45 120-169 92-136 (383)
286 COG1419 FlhF Flagellar GTP-bin 39.6 21 0.00045 43.0 2.6 19 152-170 203-221 (407)
287 TIGR02231 conserved hypothetic 39.5 1.6E+02 0.0035 36.5 10.3 102 656-798 68-174 (525)
288 PF14197 Cep57_CLD_2: Centroso 39.4 1.1E+02 0.0024 28.3 6.7 64 870-940 4-67 (69)
289 PF09789 DUF2353: Uncharacteri 39.2 6.9E+02 0.015 29.7 14.6 102 666-794 9-111 (319)
290 PF15035 Rootletin: Ciliary ro 39.2 2.4E+02 0.0053 30.6 10.3 81 411-491 15-114 (182)
291 PF08317 Spc7: Spc7 kinetochor 39.1 5.1E+02 0.011 30.3 13.8 36 691-726 66-101 (325)
292 TIGR03007 pepcterm_ChnLen poly 38.9 8.1E+02 0.018 29.9 20.8 127 659-797 161-296 (498)
293 cd00176 SPEC Spectrin repeats, 38.9 4.3E+02 0.0094 27.0 12.0 133 657-798 31-168 (213)
294 PRK04195 replication factor C 38.9 13 0.00027 45.4 0.8 29 142-170 28-57 (482)
295 PRK10536 hypothetical protein; 38.8 15 0.00033 41.8 1.3 42 119-170 51-92 (262)
296 PF06785 UPF0242: Uncharacteri 38.7 6E+02 0.013 30.4 13.7 57 886-942 100-156 (401)
297 TIGR02237 recomb_radB DNA repa 38.7 17 0.00037 38.5 1.7 26 145-170 2-30 (209)
298 PRK00080 ruvB Holliday junctio 38.6 19 0.00041 41.4 2.1 18 153-170 52-69 (328)
299 KOG4360 Uncharacterized coiled 38.6 1.9E+02 0.0042 36.0 10.3 34 765-798 215-248 (596)
300 PRK11331 5-methylcytosine-spec 38.6 19 0.0004 44.1 2.1 36 363-402 320-357 (459)
301 KOG0926 DEAH-box RNA helicase 38.6 20 0.00043 46.3 2.3 18 152-169 271-288 (1172)
302 TIGR00634 recN DNA repair prot 38.3 3E+02 0.0066 34.5 12.5 51 657-707 173-223 (563)
303 PF03961 DUF342: Protein of un 37.7 1.4E+02 0.0031 36.2 9.4 76 699-795 333-408 (451)
304 PRK11448 hsdR type I restricti 37.7 17 0.00036 49.1 1.7 34 137-171 419-452 (1123)
305 PF07058 Myosin_HC-like: Myosi 37.6 2.4E+02 0.0053 33.1 10.4 60 869-946 33-92 (351)
306 PF05911 DUF869: Plant protein 37.6 2.9E+02 0.0063 36.4 12.3 131 659-795 596-759 (769)
307 PF05496 RuvB_N: Holliday junc 37.2 34 0.00075 38.4 3.7 43 126-169 23-67 (233)
308 TIGR03689 pup_AAA proteasome A 37.0 15 0.00033 45.4 1.1 16 154-169 218-233 (512)
309 PF05529 Bap31: B-cell recepto 37.0 1E+02 0.0022 33.0 7.2 65 656-725 122-186 (192)
310 COG2433 Uncharacterized conser 36.8 2E+02 0.0043 36.6 10.2 87 914-1029 423-512 (652)
311 smart00242 MYSc Myosin. Large 36.7 27 0.00059 44.7 3.2 39 132-170 72-110 (677)
312 TIGR02640 gas_vesic_GvpN gas v 36.7 30 0.00064 38.8 3.2 29 139-169 10-38 (262)
313 KOG2543 Origin recognition com 36.4 15 0.00032 44.0 0.8 75 152-254 30-106 (438)
314 PF07926 TPR_MLP1_2: TPR/MLP1/ 36.4 78 0.0017 32.2 5.9 28 455-482 102-129 (132)
315 cd01120 RecA-like_NTPases RecA 36.2 13 0.00028 36.5 0.3 16 155-170 2-17 (165)
316 KOG2685 Cystoskeletal protein 36.0 1.2E+02 0.0026 36.7 8.1 82 697-796 289-371 (421)
317 PRK06067 flagellar accessory p 35.6 25 0.00053 38.3 2.3 28 142-169 12-42 (234)
318 PF04880 NUDE_C: NUDE protein, 35.6 48 0.001 35.6 4.3 46 975-1024 2-47 (166)
319 TIGR01243 CDC48 AAA family ATP 35.5 15 0.00032 47.1 0.7 51 119-169 174-229 (733)
320 TIGR02902 spore_lonB ATP-depen 35.4 23 0.0005 43.9 2.3 42 120-169 62-103 (531)
321 PRK00771 signal recognition pa 35.3 34 0.00074 41.7 3.6 19 152-170 95-113 (437)
322 TIGR02680 conserved hypothetic 35.2 1.5E+03 0.032 32.0 24.8 90 698-798 747-836 (1353)
323 PRK10416 signal recognition pa 35.1 28 0.00062 40.5 2.8 19 152-170 114-132 (318)
324 PF06005 DUF904: Protein of un 34.9 1.1E+02 0.0024 28.6 6.0 43 860-902 7-49 (72)
325 TIGR00614 recQ_fam ATP-depende 34.9 23 0.0005 42.9 2.2 25 143-169 19-43 (470)
326 PF05729 NACHT: NACHT domain 34.8 16 0.00035 36.2 0.7 17 154-170 2-18 (166)
327 TIGR01010 BexC_CtrB_KpsE polys 34.8 2.8E+02 0.006 32.6 10.9 57 657-727 212-269 (362)
328 PF13476 AAA_23: AAA domain; P 34.6 15 0.00033 37.7 0.5 18 153-170 20-37 (202)
329 KOG0999 Microtubule-associated 34.6 6.1E+02 0.013 32.2 13.5 82 859-941 45-142 (772)
330 PF12795 MscS_porin: Mechanose 34.5 2.1E+02 0.0046 31.8 9.4 107 677-798 22-128 (240)
331 PRK11634 ATP-dependent RNA hel 34.3 20 0.00044 45.3 1.6 25 143-169 36-60 (629)
332 KOG0340 ATP-dependent RNA heli 34.3 33 0.00071 40.8 3.1 48 141-203 35-82 (442)
333 PF00735 Septin: Septin; Inte 34.3 14 0.00031 42.1 0.3 20 149-168 1-20 (281)
334 PTZ00121 MAEBL; Provisional 34.2 2.5E+02 0.0055 39.1 11.0 34 904-937 1575-1612(2084)
335 PRK04328 hypothetical protein; 34.1 27 0.00059 38.8 2.4 26 142-167 10-38 (249)
336 PRK13341 recombination factor 34.0 23 0.00049 45.7 2.0 22 149-170 49-70 (725)
337 TIGR01843 type_I_hlyD type I s 33.9 6.5E+02 0.014 29.5 13.8 27 659-685 158-184 (423)
338 PLN02943 aminoacyl-tRNA ligase 33.7 1.3E+02 0.0029 40.2 8.8 73 408-491 885-957 (958)
339 TIGR00376 DNA helicase, putati 33.7 23 0.00049 45.0 1.9 26 144-170 166-191 (637)
340 PF12775 AAA_7: P-loop contain 33.6 21 0.00046 40.5 1.5 27 143-170 25-51 (272)
341 KOG4643 Uncharacterized coiled 33.5 9.4E+02 0.02 32.7 15.5 249 751-1034 169-448 (1195)
342 PF03962 Mnd1: Mnd1 family; I 33.4 1.6E+02 0.0034 32.1 7.9 55 697-751 66-120 (188)
343 PRK10917 ATP-dependent DNA hel 33.4 30 0.00066 44.1 2.9 40 127-170 261-300 (681)
344 COG1219 ClpX ATP-dependent pro 33.2 19 0.00041 42.4 1.0 17 152-168 97-113 (408)
345 cd01383 MYSc_type_VIII Myosin 33.1 39 0.00084 43.4 3.8 37 133-170 73-110 (677)
346 KOG3859 Septins (P-loop GTPase 33.0 21 0.00045 41.2 1.2 24 146-169 36-59 (406)
347 cd01384 MYSc_type_XI Myosin mo 33.0 37 0.00081 43.5 3.6 37 133-170 69-106 (674)
348 TIGR01618 phage_P_loop phage n 32.8 17 0.00036 40.4 0.5 21 152-172 12-32 (220)
349 cd01123 Rad51_DMC1_radA Rad51_ 32.8 29 0.00064 37.4 2.3 29 142-170 6-37 (235)
350 PRK10865 protein disaggregatio 32.7 25 0.00054 46.2 2.1 17 153-169 599-615 (857)
351 KOG0738 AAA+-type ATPase [Post 32.7 62 0.0013 39.2 5.0 46 121-166 210-259 (491)
352 PRK09361 radB DNA repair and r 32.7 33 0.00072 37.0 2.7 29 142-170 10-41 (225)
353 PRK14974 cell division protein 32.6 42 0.00092 39.5 3.7 19 152-170 140-158 (336)
354 cd01385 MYSc_type_IX Myosin mo 32.6 37 0.00081 43.6 3.5 37 133-170 75-112 (692)
355 PF12128 DUF3584: Protein of u 32.4 1.5E+03 0.034 31.3 26.4 45 987-1031 899-944 (1201)
356 PF10236 DAP3: Mitochondrial r 32.2 29 0.00064 40.0 2.3 24 147-170 18-41 (309)
357 KOG2418 Microtubule-associated 32.1 1.6E+02 0.0035 35.2 8.0 7 12-18 205-211 (448)
358 cd01381 MYSc_type_VII Myosin m 31.9 41 0.00088 43.1 3.7 37 133-170 67-104 (671)
359 PRK14962 DNA polymerase III su 31.7 29 0.00064 42.5 2.3 42 121-170 12-54 (472)
360 smart00787 Spc7 Spc7 kinetocho 31.7 4.8E+02 0.01 30.7 11.9 111 658-797 150-260 (312)
361 cd00124 MYSc Myosin motor doma 31.7 39 0.00085 43.2 3.5 37 133-170 67-104 (679)
362 KOG0736 Peroxisome assembly fa 31.7 57 0.0012 42.3 4.7 15 153-167 706-720 (953)
363 KOG0999 Microtubule-associated 31.5 2.8E+02 0.0061 35.0 10.1 60 870-943 7-66 (772)
364 PRK00131 aroK shikimate kinase 31.4 22 0.00048 36.0 1.0 17 153-169 5-21 (175)
365 PRK05580 primosome assembly pr 31.4 22 0.00049 45.3 1.3 38 126-170 143-180 (679)
366 cd01850 CDC_Septin CDC/Septin. 31.1 21 0.00045 40.6 0.8 21 149-169 1-21 (276)
367 CHL00176 ftsH cell division pr 31.0 17 0.00037 46.2 0.1 18 153-170 217-234 (638)
368 cd01377 MYSc_type_II Myosin mo 30.9 40 0.00086 43.4 3.4 38 132-170 71-109 (693)
369 PRK05703 flhF flagellar biosyn 30.9 19 0.00041 43.5 0.6 18 153-170 222-239 (424)
370 TIGR02903 spore_lon_C ATP-depe 30.8 33 0.00072 43.4 2.6 42 120-169 151-192 (615)
371 PF02534 T4SS-DNA_transf: Type 30.8 37 0.00081 40.8 3.0 18 153-170 45-62 (469)
372 PRK04537 ATP-dependent RNA hel 30.8 27 0.00059 43.7 1.8 24 144-169 40-63 (572)
373 cd01378 MYSc_type_I Myosin mot 30.8 43 0.00094 42.9 3.7 37 133-170 67-104 (674)
374 TIGR02788 VirB11 P-type DNA tr 30.8 31 0.00068 39.6 2.2 29 141-170 134-162 (308)
375 PRK09270 nucleoside triphospha 30.7 44 0.00095 36.5 3.2 36 134-169 14-50 (229)
376 cd01126 TraG_VirD4 The TraG/Tr 30.7 27 0.00058 41.1 1.7 16 155-170 2-17 (384)
377 cd01387 MYSc_type_XV Myosin mo 30.7 42 0.00092 43.0 3.5 37 133-170 68-105 (677)
378 PRK10869 recombination and rep 30.5 5E+02 0.011 32.8 12.6 48 872-919 335-387 (553)
379 TIGR02030 BchI-ChlI magnesium 30.3 32 0.0007 40.4 2.3 43 120-170 1-43 (337)
380 KOG2373 Predicted mitochondria 30.3 44 0.00096 39.8 3.2 28 142-170 261-291 (514)
381 PRK05431 seryl-tRNA synthetase 30.2 1.5E+02 0.0033 36.0 7.9 67 655-732 38-105 (425)
382 PF02456 Adeno_IVa2: Adenoviru 30.1 24 0.00053 41.3 1.2 16 155-170 90-105 (369)
383 cd01382 MYSc_type_VI Myosin mo 30.1 41 0.00089 43.4 3.3 36 133-169 72-108 (717)
384 PRK06851 hypothetical protein; 30.1 34 0.00074 40.8 2.4 42 124-170 7-48 (367)
385 TIGR01359 UMP_CMP_kin_fam UMP- 30.1 22 0.00049 36.7 0.8 15 155-169 2-16 (183)
386 CHL00181 cbbX CbbX; Provisiona 30.0 47 0.001 38.0 3.5 15 155-169 62-76 (287)
387 TIGR01817 nifA Nif-specific re 30.0 26 0.00055 43.3 1.4 45 119-169 192-236 (534)
388 KOG0971 Microtubule-associated 29.9 1.6E+03 0.034 30.6 17.6 30 767-796 281-310 (1243)
389 cd01394 radB RadB. The archaea 29.9 37 0.00081 36.3 2.5 29 142-170 6-37 (218)
390 cd02021 GntK Gluconate kinase 29.5 23 0.00049 35.6 0.7 15 155-169 2-16 (150)
391 KOG4348 Adaptor protein CMS/SE 29.4 2.4E+02 0.0052 34.5 8.9 71 399-490 556-626 (627)
392 PRK14961 DNA polymerase III su 29.3 39 0.00084 39.7 2.7 42 121-170 14-56 (363)
393 PF10498 IFT57: Intra-flagella 29.1 3.6E+02 0.0078 32.4 10.5 101 655-794 219-319 (359)
394 PF11559 ADIP: Afadin- and alp 29.0 6.6E+02 0.014 25.9 11.8 89 916-1036 55-147 (151)
395 PLN00206 DEAD-box ATP-dependen 28.9 38 0.00081 41.8 2.6 25 143-169 151-175 (518)
396 KOG1514 Origin recognition com 28.9 63 0.0014 41.5 4.5 50 346-401 572-630 (767)
397 PF13173 AAA_14: AAA domain 28.8 23 0.00049 35.1 0.6 18 153-170 3-20 (128)
398 PHA02624 large T antigen; Prov 28.7 44 0.00095 42.4 3.1 29 142-170 419-449 (647)
399 cd01380 MYSc_type_V Myosin mot 28.7 47 0.001 42.7 3.4 37 133-170 67-104 (691)
400 KOG3088 Secretory carrier memb 28.5 63 0.0014 37.4 4.0 25 998-1022 68-92 (313)
401 TIGR00634 recN DNA repair prot 28.5 1.3E+03 0.028 29.1 15.9 37 770-806 267-303 (563)
402 PRK11889 flhF flagellar biosyn 28.5 43 0.00093 40.7 2.9 18 153-170 242-259 (436)
403 PF08317 Spc7: Spc7 kinetochor 28.3 6.9E+02 0.015 29.3 12.6 40 757-796 225-264 (325)
404 cd01127 TrwB Bacterial conjuga 28.2 21 0.00046 42.6 0.3 19 152-170 42-60 (410)
405 PF15619 Lebercilin: Ciliary p 28.2 2.1E+02 0.0045 31.4 7.7 85 409-493 58-153 (194)
406 COG4467 Regulator of replicati 28.0 66 0.0014 32.3 3.5 39 861-899 12-50 (114)
407 cd00464 SK Shikimate kinase (S 28.0 24 0.00052 35.1 0.6 16 154-169 1-16 (154)
408 PHA02653 RNA helicase NPH-II; 28.0 48 0.001 42.5 3.4 25 142-168 171-195 (675)
409 PRK14723 flhF flagellar biosyn 28.0 46 0.001 43.2 3.2 18 153-170 186-203 (767)
410 TIGR00643 recG ATP-dependent D 27.9 41 0.00089 42.5 2.7 39 127-169 235-273 (630)
411 KOG0953 Mitochondrial RNA heli 27.7 66 0.0014 40.4 4.2 39 154-192 193-237 (700)
412 PRK07261 topology modulation p 27.7 26 0.00056 36.8 0.8 15 155-169 3-17 (171)
413 PRK06995 flhF flagellar biosyn 27.5 23 0.00051 43.6 0.5 18 153-170 257-274 (484)
414 KOG0978 E3 ubiquitin ligase in 27.4 1.5E+03 0.033 29.7 17.2 41 903-943 157-197 (698)
415 PF13555 AAA_29: P-loop contai 27.4 24 0.00051 31.9 0.4 15 155-169 26-40 (62)
416 TIGR03752 conj_TIGR03752 integ 27.4 3.4E+02 0.0074 33.7 10.0 65 413-488 74-139 (472)
417 PF01486 K-box: K-box region; 27.3 4.4E+02 0.0095 25.5 9.1 87 700-792 12-98 (100)
418 TIGR03819 heli_sec_ATPase heli 27.3 32 0.0007 40.4 1.6 30 140-170 167-196 (340)
419 PRK15429 formate hydrogenlyase 27.3 33 0.00071 43.7 1.8 43 120-168 373-415 (686)
420 cd01428 ADK Adenylate kinase ( 27.3 27 0.00058 36.3 0.8 15 155-169 2-16 (194)
421 PRK14954 DNA polymerase III su 27.1 1.8E+02 0.004 37.1 8.1 11 9-19 383-393 (620)
422 PF10146 zf-C4H2: Zinc finger- 27.0 3.4E+02 0.0074 30.6 9.3 74 410-487 30-103 (230)
423 TIGR03158 cas3_cyano CRISPR-as 26.9 44 0.00096 39.2 2.6 25 145-169 7-31 (357)
424 KOG4196 bZIP transcription fac 26.8 3.2E+02 0.007 28.5 8.2 62 418-484 46-107 (135)
425 PRK08118 topology modulation p 26.7 28 0.0006 36.5 0.8 14 155-168 4-17 (167)
426 KOG1547 Septin CDC10 and relat 26.6 70 0.0015 36.5 3.9 21 148-168 42-62 (336)
427 cd01393 recA_like RecA is a b 26.4 51 0.0011 35.3 2.8 29 142-170 6-37 (226)
428 TIGR02746 TraC-F-type type-IV 26.4 24 0.00051 45.5 0.3 19 152-170 430-448 (797)
429 TIGR02880 cbbX_cfxQ probable R 26.4 24 0.00053 40.1 0.4 16 154-169 60-75 (284)
430 TIGR03881 KaiC_arch_4 KaiC dom 26.4 45 0.00097 36.0 2.4 29 142-170 7-38 (229)
431 TIGR01005 eps_transp_fam exopo 26.4 1.5E+03 0.033 29.3 20.0 190 698-1005 199-405 (754)
432 PHA03247 large tegument protei 26.2 2.6E+02 0.0056 41.2 9.5 11 507-517 3002-3012(3151)
433 PF09787 Golgin_A5: Golgin sub 26.2 1.4E+03 0.029 28.7 19.5 146 868-1035 232-382 (511)
434 COG5019 CDC3 Septin family pro 26.1 39 0.00085 40.3 1.9 20 149-168 20-39 (373)
435 COG0419 SbcC ATPase involved i 25.9 1.7E+03 0.037 29.7 28.1 18 152-169 25-42 (908)
436 KOG0335 ATP-dependent RNA heli 25.8 31 0.00068 42.4 1.1 23 147-171 108-130 (482)
437 PF08614 ATG16: Autophagy prot 25.6 6.6E+02 0.014 27.2 11.0 122 862-1022 72-193 (194)
438 cd02020 CMPK Cytidine monophos 25.6 30 0.00066 34.0 0.8 15 155-169 2-16 (147)
439 PLN02678 seryl-tRNA synthetase 25.6 2.1E+02 0.0046 35.2 8.0 68 655-732 43-110 (448)
440 PRK06696 uridine kinase; Valid 25.5 63 0.0014 35.2 3.3 35 134-169 5-39 (223)
441 PF00931 NB-ARC: NB-ARC domain 25.4 65 0.0014 35.6 3.5 30 140-169 5-36 (287)
442 TIGR01313 therm_gnt_kin carboh 25.4 25 0.00054 35.8 0.2 14 155-168 1-14 (163)
443 PF13870 DUF4201: Domain of un 25.2 6.9E+02 0.015 26.5 10.9 80 700-798 6-85 (177)
444 TIGR00763 lon ATP-dependent pr 25.2 33 0.00072 44.4 1.3 16 154-169 349-364 (775)
445 PRK10820 DNA-binding transcrip 25.2 35 0.00077 42.1 1.5 46 118-169 199-244 (520)
446 TIGR00414 serS seryl-tRNA synt 25.1 2.1E+02 0.0044 34.8 7.7 67 655-732 40-108 (418)
447 KOG1803 DNA helicase [Replicat 25.0 36 0.00078 42.8 1.4 18 153-170 202-219 (649)
448 cd01379 MYSc_type_III Myosin m 25.0 56 0.0012 41.8 3.2 37 133-170 67-104 (653)
449 COG0606 Predicted ATPase with 25.0 45 0.00098 41.0 2.2 38 140-181 187-224 (490)
450 TIGR03744 traC_PFL_4706 conjug 24.9 26 0.00056 46.2 0.2 20 151-170 474-493 (893)
451 smart00488 DEXDc2 DEAD-like he 24.9 59 0.0013 37.2 3.1 37 128-170 9-45 (289)
452 smart00489 DEXDc3 DEAD-like he 24.9 59 0.0013 37.2 3.1 37 128-170 9-45 (289)
453 PF12774 AAA_6: Hydrolytic ATP 24.9 42 0.0009 37.4 1.8 37 156-192 36-83 (231)
454 PTZ00419 valyl-tRNA synthetase 24.9 2.7E+02 0.0058 37.6 9.4 69 408-487 925-993 (995)
455 TIGR02397 dnaX_nterm DNA polym 24.8 53 0.0012 37.6 2.7 23 147-169 30-53 (355)
456 COG2256 MGS1 ATPase related to 24.8 30 0.00065 41.7 0.7 24 145-168 41-64 (436)
457 KOG0804 Cytoplasmic Zn-finger 24.7 4E+02 0.0087 32.9 9.7 28 769-796 421-448 (493)
458 PF11221 Med21: Subunit 21 of 24.7 4.6E+02 0.01 27.2 9.2 112 657-789 1-138 (144)
459 PRK12724 flagellar biosynthesi 24.7 58 0.0013 39.7 3.0 18 153-170 224-241 (432)
460 TIGR02688 conserved hypothetic 24.6 28 0.00061 42.4 0.5 40 149-191 208-251 (449)
461 PRK15319 AIDA autotransporter- 24.6 1.2E+02 0.0026 42.9 6.1 9 153-161 1810-1818(2039)
462 TIGR02322 phosphon_PhnN phosph 24.6 29 0.00062 36.0 0.4 17 154-170 3-19 (179)
463 PF07989 Microtub_assoc: Micro 24.5 1.5E+02 0.0032 27.9 5.1 65 659-723 7-73 (75)
464 PRK08233 hypothetical protein; 24.5 32 0.00069 35.3 0.8 16 154-169 5-20 (182)
465 PRK15424 propionate catabolism 24.5 40 0.00087 42.1 1.7 21 148-168 238-258 (538)
466 COG0464 SpoVK ATPases of the A 24.4 36 0.00079 41.4 1.4 20 150-169 274-293 (494)
467 PF06156 DUF972: Protein of un 24.3 1.6E+02 0.0035 29.5 5.5 55 736-797 3-57 (107)
468 cd01124 KaiC KaiC is a circadi 24.3 33 0.00072 35.3 0.9 15 155-169 2-16 (187)
469 PF04156 IncA: IncA protein; 24.2 6.1E+02 0.013 26.9 10.4 97 659-785 95-191 (191)
470 PF07412 Geminin: Geminin; In 24.2 79 0.0017 34.9 3.6 48 871-929 125-172 (200)
471 COG1125 OpuBA ABC-type proline 24.2 29 0.00063 39.8 0.4 13 157-169 32-44 (309)
472 PRK09752 adhesin; Provisional 23.8 79 0.0017 42.8 4.1 6 154-159 1034-1039(1250)
473 cd01386 MYSc_type_XVIII Myosin 23.8 59 0.0013 42.4 3.1 36 133-169 67-103 (767)
474 PRK06217 hypothetical protein; 23.7 33 0.00072 36.0 0.7 15 155-169 4-18 (183)
475 KOG0739 AAA+-type ATPase [Post 23.7 36 0.00079 39.8 1.1 73 123-195 133-226 (439)
476 PF15254 CCDC14: Coiled-coil d 23.7 1.5E+03 0.032 30.2 14.6 28 699-726 386-413 (861)
477 TIGR00602 rad24 checkpoint pro 23.6 42 0.00091 42.8 1.7 17 154-170 112-128 (637)
478 KOG0354 DEAD-box like helicase 23.5 54 0.0012 42.4 2.6 26 141-169 68-93 (746)
479 CHL00195 ycf46 Ycf46; Provisio 23.4 32 0.00068 42.5 0.6 18 152-169 259-276 (489)
480 KOG0978 E3 ubiquitin ligase in 23.3 1.8E+03 0.039 29.1 24.0 114 755-942 440-553 (698)
481 PRK11034 clpA ATP-dependent Cl 23.3 62 0.0014 42.1 3.2 18 152-169 488-505 (758)
482 TIGR02329 propionate_PrpR prop 23.3 41 0.00088 41.9 1.5 44 120-169 209-252 (526)
483 PF06745 KaiC: KaiC; InterPro 23.2 49 0.0011 35.7 1.9 26 143-168 7-35 (226)
484 cd01983 Fer4_NifH The Fer4_Nif 23.2 33 0.00072 30.5 0.5 16 155-170 2-17 (99)
485 PRK06305 DNA polymerase III su 23.1 44 0.00096 40.7 1.7 42 121-170 15-57 (451)
486 PF10498 IFT57: Intra-flagella 23.1 1.8E+02 0.0039 34.8 6.6 68 656-723 277-358 (359)
487 KOG0249 LAR-interacting protei 23.0 1.3E+03 0.027 30.6 13.7 20 1099-1118 386-405 (916)
488 PF10458 Val_tRNA-synt_C: Valy 23.0 2.8E+02 0.006 25.1 6.3 36 698-733 2-37 (66)
489 COG0497 RecN ATPase involved i 22.9 1.3E+03 0.029 29.4 14.1 50 657-706 169-218 (557)
490 PRK14970 DNA polymerase III su 22.8 59 0.0013 37.9 2.6 29 142-170 28-57 (367)
491 TIGR01650 PD_CobS cobaltochela 22.7 47 0.001 39.1 1.7 25 143-169 57-81 (327)
492 TIGR02236 recomb_radA DNA repa 22.7 61 0.0013 37.0 2.7 29 142-170 82-113 (310)
493 PRK14721 flhF flagellar biosyn 22.6 34 0.00073 41.5 0.6 19 152-170 191-209 (420)
494 COG0630 VirB11 Type IV secreto 22.6 30 0.00064 40.2 0.1 19 152-170 143-161 (312)
495 TIGR02639 ClpA ATP-dependent C 22.6 64 0.0014 41.7 3.0 36 132-168 459-500 (731)
496 PRK12726 flagellar biosynthesi 22.6 34 0.00073 41.3 0.6 16 154-169 208-223 (407)
497 PF00485 PRK: Phosphoribulokin 22.5 30 0.00066 36.6 0.2 14 155-168 2-15 (194)
498 PRK01172 ski2-like helicase; P 22.5 53 0.0011 41.7 2.3 24 141-166 28-51 (674)
499 KOG0729 26S proteasome regulat 22.5 43 0.00094 38.6 1.4 12 155-166 214-225 (435)
500 TIGR00064 ftsY signal recognit 22.5 38 0.00082 38.5 0.9 21 149-169 69-89 (272)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-90 Score=837.40 Aligned_cols=356 Identities=40% Similarity=0.654 Sum_probs=322.6
Q ss_pred CCCCeeeeeecCCCCcccccCCCeEEEeeCC-Ce--EEecC---CCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhc
Q 001118 76 SKENVMVTVRFRPLSPREVNKGDEIAWYADG-DY--TVRNE---YNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQ 149 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~-~~--~v~~~---~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~ 149 (1150)
..-||+|+|||||++.+|......+++.+++ .. .++.. ..-.+.|+||+||||.+.|.+||+.++.|+|..|+.
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 3569999999999999998888877777776 33 22222 112467999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCCceeecC--------CCCCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCCC-
Q 001118 150 GINGTVFAYGVTSSGKTHTMHG--------EQKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG- 220 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM~G--------~~~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~~- 220 (1150)
|||||||||||||+||||||.| .+..+|||||++.+||+.+... +.+|.|+|||+|+|||.|+|||+|..
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~-~~EYsvKVSfLELYNEEl~DLLa~~~~ 205 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ-GAEYSVKVSFLELYNEELTDLLASEDT 205 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc-CCeEEEEEEehhhhhHHHHHhcCCccc
Confidence 9999999999999999999999 5678999999999999999754 48999999999999999999998764
Q ss_pred --CceEEEeCC------CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCC
Q 001118 221 --QNLRIREDA------QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGE 292 (1150)
Q Consensus 221 --~~L~IrEd~------~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~ 292 (1150)
..+.+.+++ +|++|.||.++.|.++.|++.+|.+|..+|++++|.||.+|||||+||+|+|....... .++
T Consensus 206 ~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~-~ge 284 (1041)
T KOG0243|consen 206 SDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTP-EGE 284 (1041)
T ss_pred cccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCC-cch
Confidence 345566655 47999999999999999999999999999999999999999999999999998664433 356
Q ss_pred cceEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCcccee
Q 001118 293 EDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISL 371 (1150)
Q Consensus 293 ~~v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~m 371 (1150)
+.+..|||+||||||||. .++|+.+.|.+|++.||+||++||+||+||.++ +.|||||+|||||||||||||.++|+|
T Consensus 285 elvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~-s~HIPYRESKLTRLLQDSLGGkTKT~i 363 (1041)
T KOG0243|consen 285 ELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH-SGHIPYRESKLTRLLQDSLGGKTKTCI 363 (1041)
T ss_pred hhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc-CCCCCchHHHHHHHHHHHhCCCceeEE
Confidence 778999999999999998 789999999999999999999999999999985 589999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhHccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001118 372 ICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQQLKRG 434 (1150)
Q Consensus 372 IatISPs~~~~eETLsTLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk~~ 434 (1150)
||||||+..+++||++||.||.|||+|+|+|.+|+.+..+.+++.|-.||++||.+|...+..
T Consensus 364 IATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 364 IATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 999999999999999999999999999999999999999999999999999999999988643
No 2
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-90 Score=831.08 Aligned_cols=591 Identities=37% Similarity=0.521 Sum_probs=458.7
Q ss_pred CCCeeeeeecCCCCcccccCCCeEEEeeCCCeEEecCCCC-------ceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhc
Q 001118 77 KENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNP-------SIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQ 149 (1150)
Q Consensus 77 ~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~~~~~~-------s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~ 149 (1150)
...|.|+|||||+++.+...+....|...++..+...... ...|.||+||+++++|++||+..++|+|++|+.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 4689999999999999877788888877776665443322 268999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCCCCceEEEeCC
Q 001118 150 GINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDA 229 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~~~~L~IrEd~ 229 (1150)
||||||||||||||||||||+|.+.+|||||+++.+||++|....++.|.|.|||+|||||.|+|||+|.+..+.|++|+
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~ 164 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDS 164 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred C-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCC
Q 001118 230 Q-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGS 308 (1150)
Q Consensus 230 ~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGS 308 (1150)
. |++|.||+++.|.|.++++.+|..|..+|+++.|.+|..|||||+||+|.|.+...... . ..++|+|||||||
T Consensus 165 ~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~----~-~~s~L~lIDLAGS 239 (675)
T KOG0242|consen 165 EGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS----S-RVSKLNLIDLAGS 239 (675)
T ss_pred CCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc----c-hhheehhhhhhhh
Confidence 6 89999999999999999999999999999999999999999999999999998754332 2 7799999999999
Q ss_pred CC-CcccccchhcccccccchhHHHHHHHHHHhccC-CCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHH
Q 001118 309 ES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDE-KATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETH 386 (1150)
Q Consensus 309 Er-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~-k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETL 386 (1150)
|| .+|++.|.|++||++||+||++||+||++|+++ ...||||||||||||||++||||++|+|||||+|+..+|+||+
T Consensus 240 ERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~ 319 (675)
T KOG0242|consen 240 ERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETK 319 (675)
T ss_pred hhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHH
Confidence 99 579999999999999999999999999999998 4569999999999999999999999999999999999999999
Q ss_pred HHHHHHhHccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 001118 387 NTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKLQSR 466 (1150)
Q Consensus 387 sTLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~ 466 (1150)
+||+||+|||.|++++.+|.++....++..++++|..|+.++..++.+.... .+-..+..+++.
T Consensus 320 nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~~--------~~~~~~~~~~e~-------- 383 (675)
T KOG0242|consen 320 NTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLEPE--------REQELLIQKLEK-------- 383 (675)
T ss_pred HHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccccc--------hhhHHHHhHhhh--------
Confidence 9999999999999999999999999999999999999999999987654321 001111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccccccccccccccccccCCCCCccccccccccc
Q 001118 467 LEEEEQEKAALLGRIQRLTKLILVSTKNSMPSSIPERPGHRRRHSFGEDELAYLPDRKREYIIDDDAGSYVSELSAEARD 546 (1150)
Q Consensus 467 Lee~ee~~~~L~~~i~~L~k~il~s~~~~~~~~~~~~~~~~r~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (1150)
+..........+++.+.+.+..+............. .+.... +... .
T Consensus 384 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~~-~------------- 430 (675)
T KOG0242|consen 384 --EEVEELLPQRSEIQSLVELLKRLSASRRELLSSLLS--LRTELR---------------INEL-D------------- 430 (675)
T ss_pred --hhHhhhhhhhhHHHHHHHHHhhhccccchhhhcccc--hhhHHH---------------hhhh-h-------------
Confidence 111122223346666666666655443221100000 000000 0000 0
Q ss_pred cccchhhHHHHHHhhhccCCcc-ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccCcccccCcCCCC
Q 001118 547 DITNLDELVKDYKKSRRRGMLG-WFKMRKPENLVGFSPSADSGSSSSVSPASSSKSLHHRVTFNDIKDGRRKSISKRGDD 625 (1150)
Q Consensus 547 ~~~~~~~~~~~~~~~r~~g~l~-w~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1150)
..++.. .+. |.+....... .
T Consensus 431 --~~~~~~-----------~~~~~~~~~~~~~~---------------~------------------------------- 451 (675)
T KOG0242|consen 431 --KLLDSL-----------LISTSKSRLLAQSL---------------I------------------------------- 451 (675)
T ss_pred --hhhhhh-----------hhhhhhhhhhhhhh---------------h-------------------------------
Confidence 000000 000 0000000000 0
Q ss_pred CCCCCCcccccccccccccccCccCCCCCCchhHHHHHHHHHHHHhhhhHhhhhch-HHHHHHHHhcCCcchHHHHHHHH
Q 001118 626 SAGGSFPERTKAGDLFSATVAGRRLPPSGTTITDQMDLLHEQMKMLAGEVALCTSS-LKRLSEQAASNSEDSQLREHMQK 704 (1150)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~idlLrEQ~KmL~gEva~~~s~-Lkrl~e~A~~~p~~~~i~~~~~~ 704 (1150)
...+......++++.+ ..-.....+-+.+|.+.++.++..++.+..... +..|.+..-..|+.+... .
T Consensus 452 --~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 520 (675)
T KOG0242|consen 452 --LELERSESSLSDLLRP-----ALELEDNEKNDKEEELKEQQSIEKEESSLSLSPLERCLLDRSNLLPELERNA----I 520 (675)
T ss_pred --hhhhhhhhhhhhhhCc-----hhhhhccccchhHHHHHHHHHhhcchhcccccchhhhhhhhhcccHHHHhhH----H
Confidence 0000000011111111 111234555558999999999999999999995 999999999999888632 5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcc--cchhhhhccchhhHHHHHHHHhhhhhHHHH
Q 001118 705 LKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNE--KTFELEIKSADNRILQEQLQMKISENTEMQ 782 (1150)
Q Consensus 705 l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlne--k~feleik~adnrilqeql~~k~~e~~elq 782 (1150)
++.|+.+++ ++..++..+.+..+.+....+... ...+.+++.++++ +.|+.+.|.| ..|+....+.....+++
T Consensus 521 ~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~ 595 (675)
T KOG0242|consen 521 IEVESEEKS-QLKNVSELSAELKELSRELLSELS-AESLEELVELIDEVIERLISESKEA---ESQEESGLKGITAKRLR 595 (675)
T ss_pred HhhhHhHHH-HHhhhhhhhHHHHHHHHhhhcccc-cccchhhhhhcchhhhhhhcccccc---ccccccccccccccccc
Confidence 677777777 888888888888888777665555 6778899999999 6788888888 66666666778888888
Q ss_pred HHHHHHHHHHHHhh
Q 001118 783 ETILLLRQQIDSLS 796 (1150)
Q Consensus 783 e~v~~l~qql~~~~ 796 (1150)
.....|.++++...
T Consensus 596 ~~~~~~~~~~~~~~ 609 (675)
T KOG0242|consen 596 SCLSSLEEKLSPIQ 609 (675)
T ss_pred cchhhhccCcchhh
Confidence 88888887765433
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.2e-90 Score=816.29 Aligned_cols=357 Identities=38% Similarity=0.582 Sum_probs=324.8
Q ss_pred CCCeeeeeecCCCCcccccCCCeEEEeeCCCeE-EecCC--CCceeEeeeeeeCCC-------CcchhHHHHHHHHHHHH
Q 001118 77 KENVMVTVRFRPLSPREVNKGDEIAWYADGDYT-VRNEY--NPSIAYGFDKVFGPA-------TTTRHVYDVAAQHVVNG 146 (1150)
Q Consensus 77 ~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~-v~~~~--~~s~~F~FD~VF~~~-------atQeeVYe~vv~plV~~ 146 (1150)
..+|+|+|||||++.+|......+++...|+.+ +.+.. .....|+||++|+.. ++|..||+.++.++|++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 457999999999999999888888887777654 33322 233459999999765 58999999999999999
Q ss_pred hhcCCCeEEEEeccCCCCCceeecCCC--CCCCchhhHHHHHHHhhhcC--CCceEEEEEeeeeeecchhhccCC-CC-C
Q 001118 147 AMQGINGTVFAYGVTSSGKTHTMHGEQ--KSPGIIPLAVKDVFGIIQET--PGREFLLRVSYLEIYNEVINDLLD-PT-G 220 (1150)
Q Consensus 147 vL~GyN~tIfAYGQTGSGKTyTM~G~~--~~~GIIPRal~dLF~~I~~~--~~~~f~V~VSylEIYNE~V~DLL~-p~-~ 220 (1150)
+|+|||+||||||||||||||||+|.. +++|||||+|++||.+|... .+..|.|.|||+|||||+|+|||+ |. +
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~k 162 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSK 162 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999987 89999999999999999754 456899999999999999999998 54 5
Q ss_pred CceEEEeCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEE
Q 001118 221 QNLRIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQ 299 (1150)
Q Consensus 221 ~~L~IrEd~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~Sk 299 (1150)
.+|+|||+| .|+||++|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||+|.+.+.......+....++||
T Consensus 163 g~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SK 242 (1221)
T KOG0245|consen 163 GGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSK 242 (1221)
T ss_pred CCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeee
Confidence 789999999 6999999999999999999999999999999999999999999999999999998877766667889999
Q ss_pred EEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccC------CCCcccCCCchhhhhhcccCCCCccceeE
Q 001118 300 LNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDE------KATHIPYRDSKLTRLLQSSLSGHGRISLI 372 (1150)
Q Consensus 300 L~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~------k~~hIPYRDSKLTrLLqDSLGGNskT~mI 372 (1150)
|+||||||||| ..+|+.|+|+|||.+|||||++||+||+||++. ++.+||||||.|||||+++|||||||+||
T Consensus 243 IsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMI 322 (1221)
T KOG0245|consen 243 ISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMI 322 (1221)
T ss_pred eeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhh
Confidence 99999999999 569999999999999999999999999999872 34599999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHhHccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001118 373 CTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQQLKRG 434 (1150)
Q Consensus 373 atISPs~~~~eETLsTLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk~~ 434 (1150)
|+|||++.||+|||+|||||+|||+|+|++++|+.++.+ +|+.|++||.+||..|..-..+
T Consensus 323 AAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~~~~ 383 (1221)
T KOG0245|consen 323 AALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQGLG 383 (1221)
T ss_pred hccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999987765 8999999999999988765443
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3e-89 Score=797.98 Aligned_cols=355 Identities=45% Similarity=0.626 Sum_probs=319.8
Q ss_pred CCCeeeeeecCCCCcccccCCCeEEEeeCCCe---EEecC----CCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhc
Q 001118 77 KENVMVTVRFRPLSPREVNKGDEIAWYADGDY---TVRNE----YNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQ 149 (1150)
Q Consensus 77 ~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~---~v~~~----~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~ 149 (1150)
..+|+|+||+||++..+...+...++..+... .+.+. ..+.+.|+||.||+++++|++||..++.|+|++|++
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 46899999999999987665554443333221 12111 123457999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCCceeecCC-CCCCCchhhHHHHHHHhhhcCCC-ceEEEEEeeeeeecchhhccCCCCC-CceEEE
Q 001118 150 GINGTVFAYGVTSSGKTHTMHGE-QKSPGIIPLAVKDVFGIIQETPG-REFLLRVSYLEIYNEVINDLLDPTG-QNLRIR 226 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM~G~-~~~~GIIPRal~dLF~~I~~~~~-~~f~V~VSylEIYNE~V~DLL~p~~-~~L~Ir 226 (1150)
||||||||||||||||||||.|. +...|||||++.+||.+|+..++ ..|.|+|||+|||||.|+|||++.. ..|.|+
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lr 163 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELR 163 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceee
Confidence 99999999999999999999999 66789999999999999997764 4699999999999999999999987 589999
Q ss_pred eCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeec
Q 001118 227 EDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDL 305 (1150)
Q Consensus 227 Ed~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDL 305 (1150)
+++ .|+||.|++++.|.++++++.+|..|..+|.+++|.||..|||||+||+|+|++...+ ..+....+.|+|+||||
T Consensus 164 e~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~-~~~~~~~~~~rlnlvDL 242 (574)
T KOG4280|consen 164 EDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKS-DGGLMSGRSSKLNLVDL 242 (574)
T ss_pred EcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeeccc-CCCccccccceeeeeec
Confidence 999 6999999999999999999999999999999999999999999999999999984322 23456778899999999
Q ss_pred CCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHH
Q 001118 306 AGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEE 384 (1150)
Q Consensus 306 AGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eE 384 (1150)
||||| .++++.|+|++|+.+||+||++||+||++|++++..||||||||||+||||||||||+|+|||||+|+..+++|
T Consensus 243 agsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~E 322 (574)
T KOG4280|consen 243 AGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEE 322 (574)
T ss_pred cchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHH
Confidence 99999 67999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHh
Q 001118 385 THNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQQLKR 433 (1150)
Q Consensus 385 TLsTLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk~ 433 (1150)
|++||+||+|||.|+|+|.+|++++ .++++.|+++|..|+.+|.....
T Consensus 323 TlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 323 TLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDPGGS 370 (574)
T ss_pred HHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhccccC
Confidence 9999999999999999999999765 46889999999999999998654
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.6e-85 Score=794.81 Aligned_cols=353 Identities=39% Similarity=0.623 Sum_probs=315.4
Q ss_pred CCCCCeeeeeecCCCCcccccCCCeEEEeeCCCeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeE
Q 001118 75 KSKENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGT 154 (1150)
Q Consensus 75 ~~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~t 154 (1150)
...++|+|+|||||++..| .+..+++..+++.+... ...|.||+||+++++|++||+.++.|+|+.+++|||+|
T Consensus 95 ~~ds~VkV~VRVRPl~~~E--~g~~iV~~~s~dsl~I~----~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaT 168 (1320)
T PLN03188 95 VSDSGVKVIVRMKPLNKGE--EGEMIVQKMSNDSLTIN----GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSS 168 (1320)
T ss_pred CCCCCeEEEEEcCCCCCcc--CCCeeEEEcCCCeEEEe----CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcce
Confidence 3467999999999999886 45556665666555443 35899999999999999999999999999999999999
Q ss_pred EEEeccCCCCCceeecCCC----------CCCCchhhHHHHHHHhhhcC------CCceEEEEEeeeeeecchhhccCCC
Q 001118 155 VFAYGVTSSGKTHTMHGEQ----------KSPGIIPLAVKDVFGIIQET------PGREFLLRVSYLEIYNEVINDLLDP 218 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~G~~----------~~~GIIPRal~dLF~~I~~~------~~~~f~V~VSylEIYNE~V~DLL~p 218 (1150)
|||||||||||||||+|+. .++|||||++++||..|... ....|.|+|||+|||||.|||||++
T Consensus 169 IFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp 248 (1320)
T PLN03188 169 VFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDP 248 (1320)
T ss_pred eecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccc
Confidence 9999999999999999964 46899999999999998642 3457999999999999999999999
Q ss_pred CCCceEEEeCCC-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEE
Q 001118 219 TGQNLRIREDAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTL 297 (1150)
Q Consensus 219 ~~~~L~IrEd~~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~ 297 (1150)
....+.|++|+. |+||.||+++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|.+.......+......
T Consensus 249 ~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~ 328 (1320)
T PLN03188 249 SQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKT 328 (1320)
T ss_pred ccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEE
Confidence 988999999985 7999999999999999999999999999999999999999999999999998754433334455778
Q ss_pred EEEEEeecCCCCCC-cccccchhcccccccchhHHHHHHHHHHhcc----CCCCcccCCCchhhhhhcccCCCCccceeE
Q 001118 298 SQLNLIDLAGSESS-KTETTGLRRKEGSYINKSLLTLGTVISKLTD----EKATHIPYRDSKLTRLLQSSLSGHGRISLI 372 (1150)
Q Consensus 298 SkL~LVDLAGSEr~-kt~a~G~RlkEg~~INkSL~ALG~VIsALa~----~k~~hIPYRDSKLTrLLqDSLGGNskT~mI 372 (1150)
|+|+|||||||||. ++++.|.+++|+++||+||++||+||.+|+. ++..||||||||||+||||+|||||+|+||
T Consensus 329 SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMI 408 (1320)
T PLN03188 329 SRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMV 408 (1320)
T ss_pred EEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEE
Confidence 99999999999995 5889999999999999999999999999985 345799999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHhHccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001118 373 CTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQQLKRGM 435 (1150)
Q Consensus 373 atISPs~~~~eETLsTLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk~~~ 435 (1150)
|||||+..+++||++||+||+|||.|+|+|.+|..+... +..|++.|..|+.||..++.+.
T Consensus 409 a~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~--vn~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 409 CAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDD--VNFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred EecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhh--HHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999876543 5678888999999999888764
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=5.7e-83 Score=729.36 Aligned_cols=344 Identities=41% Similarity=0.618 Sum_probs=313.8
Q ss_pred CCCCeeeeeecCCCCcccccCCCeEEEeeCC-C-eEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCe
Q 001118 76 SKENVMVTVRFRPLSPREVNKGDEIAWYADG-D-YTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGING 153 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~-~-~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~ 153 (1150)
..++|+|+||+||++..|...|...+....+ . .++.........|.||+||.|+++|++||..++.|+|++||.|||+
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG 84 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG 84 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence 4679999999999999998877765544433 3 3333333334789999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCceeecCCCC---CCCchhhHHHHHHHhhhcCCC-ceEEEEEeeeeeecchhhccCCCCCCceEEEeCC
Q 001118 154 TVFAYGVTSSGKTHTMHGEQK---SPGIIPLAVKDVFGIIQETPG-REFLLRVSYLEIYNEVINDLLDPTGQNLRIREDA 229 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~G~~~---~~GIIPRal~dLF~~I~~~~~-~~f~V~VSylEIYNE~V~DLL~p~~~~L~IrEd~ 229 (1150)
||||||||||||||||.|... ..|||||++++||.+|...+. .+|.|.|||||||+|+|+|||+|.+.++.|++|.
T Consensus 85 TvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK 164 (607)
T KOG0240|consen 85 TVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDK 164 (607)
T ss_pred eEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeeccc
Confidence 999999999999999999765 569999999999999987654 6899999999999999999999999999999996
Q ss_pred -CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCC
Q 001118 230 -QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGS 308 (1150)
Q Consensus 230 -~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGS 308 (1150)
.++||.|+++..|.+++++++.++.|..+|+++.|+||.+|||||+||+|+|.+... .......|+|+|||||||
T Consensus 165 ~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~----e~~~~~~gkLyLVDLaGS 240 (607)
T KOG0240|consen 165 NRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENV----EDKRKLSGKLYLVDLAGS 240 (607)
T ss_pred CCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccc----cchhhccccEEEEEcccc
Confidence 478999999999999999999999999999999999999999999999999987633 345578899999999999
Q ss_pred CC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHH
Q 001118 309 ES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHN 387 (1150)
Q Consensus 309 Er-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLs 387 (1150)
|+ +|+|+.|..+.|+++||+||.|||+||++|+++...|||||||||||||||+|||||||.||+|++|+..+..||.+
T Consensus 241 EkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~S 320 (607)
T KOG0240|consen 241 EKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKS 320 (607)
T ss_pred cccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccccc
Confidence 98 78999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHhHccccccccccccccCHHHHHHHHHHHHHH
Q 001118 388 TLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITF 423 (1150)
Q Consensus 388 TLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~ 423 (1150)
||+|++|||.|+|.+.+|...+.+++.++|..+-..
T Consensus 321 Tl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~ 356 (607)
T KOG0240|consen 321 TLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDK 356 (607)
T ss_pred chhhccccccccchhhhhhHhhHHHHHHHHHHHHhH
Confidence 999999999999999999999988888888766433
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.9e-81 Score=724.87 Aligned_cols=399 Identities=37% Similarity=0.567 Sum_probs=343.5
Q ss_pred CCCeeeeeecCCCCcccccCCCeEEEeeCCCeEEecCC---------CCceeEeeeeeeCCC-------CcchhHHHHHH
Q 001118 77 KENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEY---------NPSIAYGFDKVFGPA-------TTTRHVYDVAA 140 (1150)
Q Consensus 77 ~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~~~~---------~~s~~F~FD~VF~~~-------atQeeVYe~vv 140 (1150)
..+|+|+|||||++.+|+.-...+++..++..++.+.. ++.++|.||++|++. +.|+.||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 46899999999999999988888888888877665443 456799999999765 47999999999
Q ss_pred HHHHHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhc--CCCceEEEEEeeeeeecchhhccCCC
Q 001118 141 QHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQE--TPGREFLLRVSYLEIYNEVINDLLDP 218 (1150)
Q Consensus 141 ~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~--~~~~~f~V~VSylEIYNE~V~DLL~p 218 (1150)
..+|+.+|+|||+||||||||||||||||+|..++||||||.|..||..|+. .+...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 9999999999999999999999999999999999999999999999999975 45678999999999999999999998
Q ss_pred CC--CceEEEeCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcce
Q 001118 219 TG--QNLRIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDV 295 (1150)
Q Consensus 219 ~~--~~L~IrEd~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v 295 (1150)
.. +.|+++++. -|.||.||++..|.|++|+-.+|..|+++|++++|+||..|||||+||.|.|.++-.+...+....
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 75 679999998 699999999999999999999999999999999999999999999999999999877766666677
Q ss_pred EEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccC-----CCCcccCCCchhhhhhcccCCCCccc
Q 001118 296 TLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDE-----KATHIPYRDSKLTRLLQSSLSGHGRI 369 (1150)
Q Consensus 296 ~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~-----k~~hIPYRDSKLTrLLqDSLGGNskT 369 (1150)
..|+|.||||||||| +++++.|.|++||++||+||++||.||++|++. +.++||||||.|||||+|+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 889999999999999 689999999999999999999999999999973 34699999999999999999999999
Q ss_pred eeEEeeCCCCCCHHHHHHHHHHHhHccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHH
Q 001118 370 SLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDL 449 (1150)
Q Consensus 370 ~mIatISPs~~~~eETLsTLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~ 449 (1150)
+||+||||+.++|+|||+|||||.|||+|+|.+.+|+..+. ..|+.++.|++.|+.+|.+..+.. ....++.+
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpna-rvirElReEve~lr~qL~~ae~~~------~~el~e~l 395 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNA-RVIRELREEVEKLREQLEQAEAMK------LPELKEKL 395 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchH-HHHHHHHHHHHHHHHHHhhhhhcc------chHHHHHH
Confidence 99999999999999999999999999999999999987554 468899999999999988733211 00112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 450 VNLKLQLEAGQVKLQSRLEEEEQEKAALLGRIQ 482 (1150)
Q Consensus 450 ~~lk~qle~~~~~Lq~~Lee~ee~~~~L~~~i~ 482 (1150)
++...-+++....+.++|...++.+..+...++
T Consensus 396 ~esekli~ei~~twEEkl~ktE~in~erq~~L~ 428 (1714)
T KOG0241|consen 396 EESEKLIKEITVTWEEKLRKTEEINQERQAQLE 428 (1714)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233344555556555555555444443
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=5.9e-80 Score=693.62 Aligned_cols=318 Identities=43% Similarity=0.642 Sum_probs=283.9
Q ss_pred CCeeeeeecCCCCcccccCCCeEEEeeC-CCeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEE
Q 001118 78 ENVMVTVRFRPLSPREVNKGDEIAWYAD-GDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVF 156 (1150)
Q Consensus 78 ~~VrV~VRVRPl~~~E~~~g~~v~~~~d-~~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIf 156 (1150)
.+|+|+|||||+...|...+...++... +..++.. ..+...|.||+||+++++|++||+.+++|+|+++++|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~-~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWH-SHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEee-CCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 3799999999999998765554444333 3333333 3346789999999999999999999999999999999999999
Q ss_pred EeccCCCCCceeecCCCC--------CCCchhhHHHHHHHhhhcC-----CCceEEEEEeeeeeecchhhccCCCCCCce
Q 001118 157 AYGVTSSGKTHTMHGEQK--------SPGIIPLAVKDVFGIIQET-----PGREFLLRVSYLEIYNEVINDLLDPTGQNL 223 (1150)
Q Consensus 157 AYGQTGSGKTyTM~G~~~--------~~GIIPRal~dLF~~I~~~-----~~~~f~V~VSylEIYNE~V~DLL~p~~~~L 223 (1150)
|||||||||||||+|+.. ++|||||++++||..++.. .+..|.|+|||+|||||+|+|||++....+
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l 159 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNL 159 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCc
Confidence 999999999999999753 5799999999999998643 346899999999999999999999988899
Q ss_pred EEEeCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEE
Q 001118 224 RIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNL 302 (1150)
Q Consensus 224 ~IrEd~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~L 302 (1150)
.|++++ +|++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+..... .......|+|+|
T Consensus 160 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~--~~~~~~~s~l~~ 237 (337)
T cd01373 160 KIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKA--SSTNIRTSRLNL 237 (337)
T ss_pred eEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCC--CCCcEEEEEEEE
Confidence 999998 57999999999999999999999999999999999999999999999999998754322 223567899999
Q ss_pred eecCCCCCC-cccccchhcccccccchhHHHHHHHHHHhcc---CCCCcccCCCchhhhhhcccCCCCccceeEEeeCCC
Q 001118 303 IDLAGSESS-KTETTGLRRKEGSYINKSLLTLGTVISKLTD---EKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPA 378 (1150)
Q Consensus 303 VDLAGSEr~-kt~a~G~RlkEg~~INkSL~ALG~VIsALa~---~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs 378 (1150)
||||||||. ++++.|.+++|+.+||+||++|++||.+|++ ++..||||||||||+||||+|||||+|+|||||||+
T Consensus 238 VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~ 317 (337)
T cd01373 238 VDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPS 317 (337)
T ss_pred EECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCC
Confidence 999999994 5789999999999999999999999999975 345899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhHcccc
Q 001118 379 SSNSEETHNTLKFAHRSKHV 398 (1150)
Q Consensus 379 ~~~~eETLsTLrFA~RAK~I 398 (1150)
..+++||++||+||.|||.|
T Consensus 318 ~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 318 SKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred cccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999987
No 9
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.2e-79 Score=691.40 Aligned_cols=319 Identities=43% Similarity=0.697 Sum_probs=290.1
Q ss_pred CeeeeeecCCCCcccccCCCeEEEeeCC-CeEEecCC-------------CCceeEeeeeeeCCCCcchhHHHHHHHHHH
Q 001118 79 NVMVTVRFRPLSPREVNKGDEIAWYADG-DYTVRNEY-------------NPSIAYGFDKVFGPATTTRHVYDVAAQHVV 144 (1150)
Q Consensus 79 ~VrV~VRVRPl~~~E~~~g~~v~~~~d~-~~~v~~~~-------------~~s~~F~FD~VF~~~atQeeVYe~vv~plV 144 (1150)
+|+|+|||||+++.|...+...++...+ ..++.... .....|.||+||+++++|++||+.+++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 6999999999999998777665554433 33333221 124689999999999999999999999999
Q ss_pred HHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCC-CceEEEEEeeeeeecchhhccCCCCCCce
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETP-GREFLLRVSYLEIYNEVINDLLDPTGQNL 223 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~-~~~f~V~VSylEIYNE~V~DLL~p~~~~L 223 (1150)
+++++|||+||||||||||||||||+|++.++|||||++++||+.++... +..|.|+|||+|||||+|+|||++....+
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999999999999998765 67899999999999999999999988899
Q ss_pred EEEeCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEE
Q 001118 224 RIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNL 302 (1150)
Q Consensus 224 ~IrEd~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~L 302 (1150)
.|++|+ +|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.....+ .......|+|+|
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~-~~~~~~~s~l~~ 239 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTAS-INQQVRIGKLSL 239 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCC-CCCcEEEEEEEE
Confidence 999999 578999999999999999999999999999999999999999999999999998754422 244578899999
Q ss_pred eecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCC--CCcccCCCchhhhhhcccCCCCccceeEEeeCCCC
Q 001118 303 IDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEK--ATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPAS 379 (1150)
Q Consensus 303 VDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k--~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~ 379 (1150)
|||||||| .+++..|.+++|+.+||+||++|++||.+|+.++ ..||||||||||+||+|+|||||+|+||+||||+.
T Consensus 240 VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~ 319 (338)
T cd01370 240 IDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSS 319 (338)
T ss_pred EECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCch
Confidence 99999999 4578899999999999999999999999999876 38999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHcccc
Q 001118 380 SNSEETHNTLKFAHRSKHV 398 (1150)
Q Consensus 380 ~~~eETLsTLrFA~RAK~I 398 (1150)
.+++||++||+||+|||+|
T Consensus 320 ~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 320 SHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhHHHHHHHHHHHHHhccC
Confidence 9999999999999999986
No 10
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3.3e-77 Score=675.39 Aligned_cols=328 Identities=39% Similarity=0.597 Sum_probs=298.2
Q ss_pred CCeeeeeecCCCCcccccCCCeEEEeeCCCeEEecCC-------CCceeEeeeeeeCCC-------CcchhHHHHHHHHH
Q 001118 78 ENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEY-------NPSIAYGFDKVFGPA-------TTTRHVYDVAAQHV 143 (1150)
Q Consensus 78 ~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~~~~-------~~s~~F~FD~VF~~~-------atQeeVYe~vv~pl 143 (1150)
++|+|+||+||++..|...+...++..++..+..... .....|.||+||++. ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 4899999999999999888877766666654443332 245689999999999 99999999999999
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCC--CceEEEEEeeeeeecchhhccCCCCC-
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETP--GREFLLRVSYLEIYNEVINDLLDPTG- 220 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~--~~~f~V~VSylEIYNE~V~DLL~p~~- 220 (1150)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.++... ...|.|+|||+|||||+|+|||++..
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 999999999999999999999999999999999999999999999997654 46899999999999999999999874
Q ss_pred --CceEEEeCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEE
Q 001118 221 --QNLRIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTL 297 (1150)
Q Consensus 221 --~~L~IrEd~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~ 297 (1150)
..+.|++++ .|++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..............
T Consensus 161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~ 240 (356)
T cd01365 161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKV 240 (356)
T ss_pred CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEE
Confidence 679999998 57999999999999999999999999999999999999999999999999999876554334556788
Q ss_pred EEEEEeecCCCCCC-cccccchhcccccccchhHHHHHHHHHHhccC-------CCCcccCCCchhhhhhcccCCCCccc
Q 001118 298 SQLNLIDLAGSESS-KTETTGLRRKEGSYINKSLLTLGTVISKLTDE-------KATHIPYRDSKLTRLLQSSLSGHGRI 369 (1150)
Q Consensus 298 SkL~LVDLAGSEr~-kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~-------k~~hIPYRDSKLTrLLqDSLGGNskT 369 (1150)
|+|+||||||||+. +++..|.+++|+..||+||++|++||.+|+.+ +..||||||||||+||+|+||||++|
T Consensus 241 s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t 320 (356)
T cd01365 241 SKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKT 320 (356)
T ss_pred EEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceE
Confidence 99999999999994 57788999999999999999999999999864 35799999999999999999999999
Q ss_pred eeEEeeCCCCCCHHHHHHHHHHHhHccccccccccc
Q 001118 370 SLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQN 405 (1150)
Q Consensus 370 ~mIatISPs~~~~eETLsTLrFA~RAK~Iknk~~vN 405 (1150)
+||+||+|...+++||++||+||.|+++|++.|++|
T Consensus 321 ~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 321 AMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999999999999876
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.9e-77 Score=672.79 Aligned_cols=314 Identities=39% Similarity=0.618 Sum_probs=279.8
Q ss_pred CCeeeeeecCCCCcccccCCCeEEEe-eCCCeEEecC-------------CCCceeEeeeeeeCCCCcchhHHHHHHHHH
Q 001118 78 ENVMVTVRFRPLSPREVNKGDEIAWY-ADGDYTVRNE-------------YNPSIAYGFDKVFGPATTTRHVYDVAAQHV 143 (1150)
Q Consensus 78 ~~VrV~VRVRPl~~~E~~~g~~v~~~-~d~~~~v~~~-------------~~~s~~F~FD~VF~~~atQeeVYe~vv~pl 143 (1150)
.+|+|+|||||+.+.|...+...++. .++..++... ......|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 37999999999999987655444333 3333333222 123568999999999999999999999999
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCCC---
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG--- 220 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~~--- 220 (1150)
|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|+|||+|||||+|+|||++..
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 9999999999999999999999999999999999999999999999875 99999999999999999998754
Q ss_pred ---CceEEEeCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCC----CC
Q 001118 221 ---QNLRIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQ----GE 292 (1150)
Q Consensus 221 ---~~L~IrEd~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~----~~ 292 (1150)
..+.|++|+ .|++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+....... ..
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 369999999 4689999999999999999999999999999999999999999999999999876543211 23
Q ss_pred cceEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccC-----CCCcccCCCchhhhhhcccCCCC
Q 001118 293 EDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDE-----KATHIPYRDSKLTRLLQSSLSGH 366 (1150)
Q Consensus 293 ~~v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~-----k~~hIPYRDSKLTrLLqDSLGGN 366 (1150)
.....|+|+||||||||| .++++.|.+++|+.+||+||++|++||.+|+.. +..||||||||||+||||+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 467789999999999999 457899999999999999999999999999863 45899999999999999999999
Q ss_pred ccceeEEeeCCCCCCHHHHHHHHHHHhHcc
Q 001118 367 GRISLICTVTPASSNSEETHNTLKFAHRSK 396 (1150)
Q Consensus 367 skT~mIatISPs~~~~eETLsTLrFA~RAK 396 (1150)
++|+||+||||+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 12
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.9e-75 Score=650.71 Aligned_cols=318 Identities=61% Similarity=0.943 Sum_probs=291.9
Q ss_pred CeeeeeecCCCCcccccCCCeEEEeeCCC-eEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEE
Q 001118 79 NVMVTVRFRPLSPREVNKGDEIAWYADGD-YTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFA 157 (1150)
Q Consensus 79 ~VrV~VRVRPl~~~E~~~g~~v~~~~d~~-~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfA 157 (1150)
+|+|+||+||+...|.. +...+|..+++ .++.........|.||+||+++++|++||+.++.|+|+.+++|||+||||
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a 79 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 69999999999998874 44455555554 55555556678999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCCCCceEEEeCCC-CcEEeC
Q 001118 158 YGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQ-GTYVEG 236 (1150)
Q Consensus 158 YGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~~~~L~IrEd~~-Gv~V~G 236 (1150)
||||||||||||+|+..++|||||++++||..++..++..|.|+|||+|||||.|+|||++....+.+++++. |++|.|
T Consensus 80 yG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~g 159 (321)
T cd01374 80 YGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAG 159 (321)
T ss_pred ecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCC
Confidence 9999999999999999999999999999999998888889999999999999999999999988999999986 899999
Q ss_pred cEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCCCCCccccc
Q 001118 237 IKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSESSKTETT 316 (1150)
Q Consensus 237 Lsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGSEr~kt~a~ 316 (1150)
++++.|.|++++..+|..|.++|++++|.+|..|||||+||+|+|.+...... .......|+|+||||||||+......
T Consensus 160 l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~~~~s~l~~vDLAGsE~~~~~~~ 238 (321)
T cd01374 160 LTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS-ESGTVRVSTLNLIDLAGSERASQTGA 238 (321)
T ss_pred ceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC-CCCcEEEEEEEEEECCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999998654321 34567889999999999999543338
Q ss_pred chhcccccccchhHHHHHHHHHHhccCC-CCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHhHc
Q 001118 317 GLRRKEGSYINKSLLTLGTVISKLTDEK-ATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRS 395 (1150)
Q Consensus 317 G~RlkEg~~INkSL~ALG~VIsALa~~k-~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLrFA~RA 395 (1150)
|.+++|+.+||+||.+|++||.+|+.++ ..||||||||||+||+|+||||++|+|||||+|...+++||++||+||+|+
T Consensus 239 ~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~ 318 (321)
T cd01374 239 GERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRA 318 (321)
T ss_pred CccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875 689999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 001118 396 KHV 398 (1150)
Q Consensus 396 K~I 398 (1150)
++|
T Consensus 319 ~~i 321 (321)
T cd01374 319 KKV 321 (321)
T ss_pred hcC
Confidence 986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2e-75 Score=659.54 Aligned_cols=326 Identities=41% Similarity=0.650 Sum_probs=292.5
Q ss_pred CCeeeeeecCCCCcccccCCCeEEEeeCCC-eEEecCC-----CCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCC
Q 001118 78 ENVMVTVRFRPLSPREVNKGDEIAWYADGD-YTVRNEY-----NPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGI 151 (1150)
Q Consensus 78 ~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~-~~v~~~~-----~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~Gy 151 (1150)
.+|+|+|||||+...|...+...++..++. ..+.... .....|.||+||+++++|++||+.++.|+|+.+++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 589999999999999977666555544432 3332222 2467899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCCceeecCCCC-----------CCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCC-
Q 001118 152 NGTVFAYGVTSSGKTHTMHGEQK-----------SPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPT- 219 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~G~~~-----------~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~- 219 (1150)
|+||||||||||||||||+|+.. .+|||||++++||+.+... +..|.|+|||+|||||.|+|||++.
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~ 160 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSES 160 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCcc
Confidence 99999999999999999999743 4899999999999999765 6789999999999999999999986
Q ss_pred --CCceEEEeC---CCCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcc
Q 001118 220 --GQNLRIRED---AQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEED 294 (1150)
Q Consensus 220 --~~~L~IrEd---~~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~ 294 (1150)
..++.++++ ..|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+..... .+...
T Consensus 161 ~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~-~~~~~ 239 (352)
T cd01364 161 DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTI-SGEEL 239 (352)
T ss_pred ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCC-CCCcc
Confidence 568999999 368999999999999999999999999999999999999999999999999998764432 23445
Q ss_pred eEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEE
Q 001118 295 VTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLIC 373 (1150)
Q Consensus 295 v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIa 373 (1150)
...|+|+||||||||+ .+.++.+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||||+|+||+
T Consensus 240 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~ 318 (352)
T cd01364 240 VKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIA 318 (352)
T ss_pred EEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 6789999999999999 4577888999999999999999999999999865 7999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHhHcccccccccccc
Q 001118 374 TVTPASSNSEETHNTLKFAHRSKHVEIKASQNK 406 (1150)
Q Consensus 374 tISPs~~~~eETLsTLrFA~RAK~Iknk~~vN~ 406 (1150)
||+|+..+++||++||+||.|+++|+|+|.+|.
T Consensus 319 ~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 319 TISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999999985
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2.5e-75 Score=654.84 Aligned_cols=320 Identities=46% Similarity=0.705 Sum_probs=289.7
Q ss_pred CCeeeeeecCCCCcccccCCCeEEEeeC--CCeEEecCC-----CCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcC
Q 001118 78 ENVMVTVRFRPLSPREVNKGDEIAWYAD--GDYTVRNEY-----NPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQG 150 (1150)
Q Consensus 78 ~~VrV~VRVRPl~~~E~~~g~~v~~~~d--~~~~v~~~~-----~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~G 150 (1150)
++|+|+|||||+++.|...+...++..+ ...+..... .....|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 5899999999999998877665444432 222222221 245689999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCceeecCCCC---CCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCCC-CceEEE
Q 001118 151 INGTVFAYGVTSSGKTHTMHGEQK---SPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG-QNLRIR 226 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~G~~~---~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~~-~~L~Ir 226 (1150)
||+||||||||||||||||+|+.. .+|||||++++||..+...++..|.|+|||+|||||.|+|||++.. ..+.++
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 999999999999999999999887 8999999999999999888788999999999999999999999876 679999
Q ss_pred eCCC-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeec
Q 001118 227 EDAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDL 305 (1150)
Q Consensus 227 Ed~~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDL 305 (1150)
+++. |++|.|++++.|.|++++..+|..|.++|++++|.+|..|||||+||+|+|++..... .+...+..|+|+||||
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~-~~~~~~~~s~L~~VDL 239 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGE-DGENHIRVGKLNLVDL 239 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccC-CCCCcEEEEEEEEEEC
Confidence 9985 7999999999999999999999999999999999999999999999999998775433 2345678899999999
Q ss_pred CCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHH
Q 001118 306 AGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEE 384 (1150)
Q Consensus 306 AGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eE 384 (1150)
||||+ .+++..|.+++|+..||+||.+|++||.+|+.++..||||||||||+||+|+||||++|+||+||+|...+++|
T Consensus 240 AGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~e 319 (333)
T cd01371 240 AGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDE 319 (333)
T ss_pred CCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHH
Confidence 99999 45778899999999999999999999999999887799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHcccc
Q 001118 385 THNTLKFAHRSKHV 398 (1150)
Q Consensus 385 TLsTLrFA~RAK~I 398 (1150)
|++||+||+|||+|
T Consensus 320 Tl~TL~fa~r~r~I 333 (333)
T cd01371 320 TLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999986
No 15
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3e-75 Score=651.73 Aligned_cols=309 Identities=36% Similarity=0.567 Sum_probs=279.3
Q ss_pred CCeeeeeecCCCCcccccCCCeEEEeeCCC-eEEecCC---------CCceeEeeeeeeCCCCcchhHHHHHHHHHHHHh
Q 001118 78 ENVMVTVRFRPLSPREVNKGDEIAWYADGD-YTVRNEY---------NPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGA 147 (1150)
Q Consensus 78 ~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~-~~v~~~~---------~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~v 147 (1150)
.+|+|+|||||+.+.|...+...++..++. .+..... .....|.||+||+++++|++||+.+++|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 379999999999999987666555555553 3322211 124689999999999999999999999999999
Q ss_pred hcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCCCCceEEEe
Q 001118 148 MQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIRE 227 (1150)
Q Consensus 148 L~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~~~~L~IrE 227 (1150)
++|||+||||||||||||||||+|+..++|||||++++||..++... ..|.|+|||+|||||.|+|||++ ...+.|++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~ 158 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLE 158 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC-ccceeEEE
Confidence 99999999999999999999999999999999999999999997655 68999999999999999999998 56799999
Q ss_pred CCC-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecC
Q 001118 228 DAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLA 306 (1150)
Q Consensus 228 d~~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLA 306 (1150)
++. |++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+... ....|+|+|||||
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------~~~~s~l~~vDLA 231 (322)
T cd01367 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-------NKLLGKLSFIDLA 231 (322)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-------CeeEEEEEEeecC
Confidence 975 68999999999999999999999999999999999999999999999999987533 4578999999999
Q ss_pred CCCCCc--ccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHH
Q 001118 307 GSESSK--TETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEE 384 (1150)
Q Consensus 307 GSEr~k--t~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eE 384 (1150)
|||+.. ....|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||||+|||||+|+|||||||+..+++|
T Consensus 232 GsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~e 310 (322)
T cd01367 232 GSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEH 310 (322)
T ss_pred CccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHH
Confidence 999954 34578999999999999999999999999865 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHcc
Q 001118 385 THNTLKFAHRSK 396 (1150)
Q Consensus 385 TLsTLrFA~RAK 396 (1150)
|++||+||+|+|
T Consensus 311 Tl~tL~fa~r~k 322 (322)
T cd01367 311 TLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHhhC
Confidence 999999999986
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.2e-74 Score=644.25 Aligned_cols=317 Identities=45% Similarity=0.678 Sum_probs=289.3
Q ss_pred CCeeeeeecCCCCcccccCCCeEEEe-eCCCeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEE
Q 001118 78 ENVMVTVRFRPLSPREVNKGDEIAWY-ADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVF 156 (1150)
Q Consensus 78 ~~VrV~VRVRPl~~~E~~~g~~v~~~-~d~~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIf 156 (1150)
++|+|+|||||++..|..++...++. .++..+..........|.||+||+++++|++||+.++.|+|+.+++|||+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 58999999999999986655544444 34434444545567799999999999999999999999999999999999999
Q ss_pred EeccCCCCCceeecCCCC---CCCchhhHHHHHHHhhhcCC-CceEEEEEeeeeeecchhhccCCCCCCceEEEeCC-CC
Q 001118 157 AYGVTSSGKTHTMHGEQK---SPGIIPLAVKDVFGIIQETP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDA-QG 231 (1150)
Q Consensus 157 AYGQTGSGKTyTM~G~~~---~~GIIPRal~dLF~~I~~~~-~~~f~V~VSylEIYNE~V~DLL~p~~~~L~IrEd~-~G 231 (1150)
|||||||||||||+|+.. .+|||||++++||+.+.... +..|.|+|||+|||||.|+|||++.+..+.+++++ .|
T Consensus 82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~ 161 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRG 161 (325)
T ss_pred EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCC
Confidence 999999999999999988 89999999999999997654 45799999999999999999999988899999998 57
Q ss_pred cEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCCCC-
Q 001118 232 TYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSES- 310 (1150)
Q Consensus 232 v~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGSEr- 310 (1150)
++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.... ......|+|+||||||||+
T Consensus 162 ~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~----~~~~~~s~l~~VDLAGsE~~ 237 (325)
T cd01369 162 VYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE----TGSKKRGKLFLVDLAGSEKV 237 (325)
T ss_pred EEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC----CCCEEEEEEEEEECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999875432 3456889999999999999
Q ss_pred CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHHHHH
Q 001118 311 SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLK 390 (1150)
Q Consensus 311 ~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLr 390 (1150)
.++++.|.+++|+..||+||.+|++||.+|+.++..|||||||+||+||+|+|||||+|+||+||+|+..+++||++||+
T Consensus 238 ~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~ 317 (325)
T cd01369 238 SKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLR 317 (325)
T ss_pred cccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHH
Confidence 46888999999999999999999999999998877899999999999999999999999999999999999999999999
Q ss_pred HHhHcccc
Q 001118 391 FAHRSKHV 398 (1150)
Q Consensus 391 FA~RAK~I 398 (1150)
||+|||+|
T Consensus 318 ~a~r~~~i 325 (325)
T cd01369 318 FGARAKTI 325 (325)
T ss_pred HHHHhhcC
Confidence 99999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=5.4e-74 Score=640.60 Aligned_cols=309 Identities=36% Similarity=0.550 Sum_probs=278.3
Q ss_pred CeeeeeecCCCCcccccCCCeEEEeeCC-----CeEEecC---CCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcC
Q 001118 79 NVMVTVRFRPLSPREVNKGDEIAWYADG-----DYTVRNE---YNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQG 150 (1150)
Q Consensus 79 ~VrV~VRVRPl~~~E~~~g~~v~~~~d~-----~~~v~~~---~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~G 150 (1150)
+|+|+|||||+.+.|.+....+.. .++ ..+.... ......|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~-~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRG-IDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEE-eCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999999988543333333 222 2232222 2245789999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCCCCceEEEeCCC
Q 001118 151 INGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQ 230 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~~~~L~IrEd~~ 230 (1150)
||+||||||||||||||||+|+..++|||||++++||+.++.. ...|.|+|||+|||||.|+|||++....+.|++++.
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~ 158 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ-AWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKD 158 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc-cccceEEEEEEEEECCEeeEccCCCCCCceEEEcCC
Confidence 9999999999999999999999999999999999999988654 367999999999999999999999888899999975
Q ss_pred -CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCCC
Q 001118 231 -GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSE 309 (1150)
Q Consensus 231 -Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGSE 309 (1150)
|++|.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|.|.+... .....|+|+||||||||
T Consensus 159 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------~~~~~s~l~~VDLAGsE 232 (319)
T cd01376 159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS------NIQLEGKLNLIDLAGSE 232 (319)
T ss_pred CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC------CceEEEEEEEEECCCCC
Confidence 58999999999999999999999999999999999999999999999999987632 23678999999999999
Q ss_pred CC-cccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHHH
Q 001118 310 SS-KTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNT 388 (1150)
Q Consensus 310 r~-kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsT 388 (1150)
+. +++..|.+++|+..||+||++|++||.+|+.+. .|||||||+||+||+|+|||||+|+||+||||...+++||++|
T Consensus 233 ~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~T 311 (319)
T cd01376 233 DNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLST 311 (319)
T ss_pred cccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHH
Confidence 94 578899999999999999999999999998764 8999999999999999999999999999999999999999999
Q ss_pred HHHHhHcc
Q 001118 389 LKFAHRSK 396 (1150)
Q Consensus 389 LrFA~RAK 396 (1150)
|+||+|||
T Consensus 312 L~fa~r~~ 319 (319)
T cd01376 312 LNFASRSK 319 (319)
T ss_pred HHHHHhhC
Confidence 99999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=8e-74 Score=643.26 Aligned_cols=319 Identities=43% Similarity=0.652 Sum_probs=286.4
Q ss_pred CeeeeeecCCCCcccccCCCeEEEeeCC-CeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEE
Q 001118 79 NVMVTVRFRPLSPREVNKGDEIAWYADG-DYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFA 157 (1150)
Q Consensus 79 ~VrV~VRVRPl~~~E~~~g~~v~~~~d~-~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfA 157 (1150)
+|+|+||+||+...|...+...++..++ +..+... ....|.||+||+++++|++||+.+++|+|+.+++|||+||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~--~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG--TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec--CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceee
Confidence 6999999999999997776655544322 2222222 256899999999999999999999999999999999999999
Q ss_pred eccCCCCCceeecCCC------CCCCchhhHHHHHHHhhhcCCC-ceEEEEEeeeeeecchhhccCCCC---CCceEEEe
Q 001118 158 YGVTSSGKTHTMHGEQ------KSPGIIPLAVKDVFGIIQETPG-REFLLRVSYLEIYNEVINDLLDPT---GQNLRIRE 227 (1150)
Q Consensus 158 YGQTGSGKTyTM~G~~------~~~GIIPRal~dLF~~I~~~~~-~~f~V~VSylEIYNE~V~DLL~p~---~~~L~IrE 227 (1150)
||||||||||||+|+. .++|||||++++||..++.... ..|.|.|||+|||||.|+|||.+. ...+.|++
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e 159 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIRE 159 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEEE
Confidence 9999999999999974 5699999999999999986655 789999999999999999999986 57899999
Q ss_pred CC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCC------CCCcceEEEEE
Q 001118 228 DA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGEN------QGEEDVTLSQL 300 (1150)
Q Consensus 228 d~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~------~~~~~v~~SkL 300 (1150)
++ .|++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+...+.. ........|+|
T Consensus 160 ~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l 239 (341)
T cd01372 160 DSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKF 239 (341)
T ss_pred CCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEE
Confidence 98 578999999999999999999999999999999999999999999999999998765311 13445788999
Q ss_pred EEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCC--CcccCCCchhhhhhcccCCCCccceeEEeeCC
Q 001118 301 NLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKA--THIPYRDSKLTRLLQSSLSGHGRISLICTVTP 377 (1150)
Q Consensus 301 ~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~--~hIPYRDSKLTrLLqDSLGGNskT~mIatISP 377 (1150)
+||||||||+ .++++.|.+++|+..||+||++|++||.+|+.++. .|||||+||||+||+|+||||++|+||+||||
T Consensus 240 ~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp 319 (341)
T cd01372 240 HFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSP 319 (341)
T ss_pred EEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCC
Confidence 9999999999 45788999999999999999999999999998653 79999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhHccccc
Q 001118 378 ASSNSEETHNTLKFAHRSKHVE 399 (1150)
Q Consensus 378 s~~~~eETLsTLrFA~RAK~Ik 399 (1150)
+..+++||++||+||.|||+|+
T Consensus 320 ~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 320 ADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred ChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999985
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=6.9e-73 Score=635.49 Aligned_cols=312 Identities=42% Similarity=0.627 Sum_probs=278.2
Q ss_pred CeeeeeecCCCCcccccCCCeEEEeeCCCeE-----------EecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHh
Q 001118 79 NVMVTVRFRPLSPREVNKGDEIAWYADGDYT-----------VRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGA 147 (1150)
Q Consensus 79 ~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~-----------v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~v 147 (1150)
.|+|+||+||+...+. ..+.+..++..+ ..+.......|.||+||++ ++|++||+.++.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQG---SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCC---ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 4899999999987442 123333333221 1122334567999999999 999999999999999999
Q ss_pred hcCCCeEEEEeccCCCCCceeecCCC---CCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCCC----
Q 001118 148 MQGINGTVFAYGVTSSGKTHTMHGEQ---KSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG---- 220 (1150)
Q Consensus 148 L~GyN~tIfAYGQTGSGKTyTM~G~~---~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~~---- 220 (1150)
++|||+||||||||||||||||+|+. .++|||||++++||..++..++..|.|+|||+|||||.|+|||++..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~ 156 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALE 156 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccc
Confidence 99999999999999999999999976 46899999999999999988888999999999999999999999874
Q ss_pred --CceEEEeCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEE
Q 001118 221 --QNLRIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTL 297 (1150)
Q Consensus 221 --~~L~IrEd~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~ 297 (1150)
..+.|++++ ++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+..... .......
T Consensus 157 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~--~~~~~~~ 234 (334)
T cd01375 157 SLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREA--GSEVVRL 234 (334)
T ss_pred cCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCC--CCCceEE
Confidence 579999997 57899999999999999999999999999999999999999999999999999864332 3446788
Q ss_pred EEEEEeecCCCCCC-cccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeC
Q 001118 298 SQLNLIDLAGSESS-KTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVT 376 (1150)
Q Consensus 298 SkL~LVDLAGSEr~-kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatIS 376 (1150)
|+|+||||||||+. +++..|.+++|+..||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+||+|||
T Consensus 235 s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vs 314 (334)
T cd01375 235 SKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIW 314 (334)
T ss_pred EEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 99999999999994 67888999999999999999999999999987768999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhHcc
Q 001118 377 PASSNSEETHNTLKFAHRSK 396 (1150)
Q Consensus 377 Ps~~~~eETLsTLrFA~RAK 396 (1150)
|+..+++||++||+||+|++
T Consensus 315 p~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 315 VEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.1e-71 Score=623.13 Aligned_cols=318 Identities=41% Similarity=0.620 Sum_probs=285.9
Q ss_pred CCCeeeeeecCCCCcccccCCCeEEEeeCC--CeEEecCC-CCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCe
Q 001118 77 KENVMVTVRFRPLSPREVNKGDEIAWYADG--DYTVRNEY-NPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGING 153 (1150)
Q Consensus 77 ~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~--~~~v~~~~-~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~ 153 (1150)
+|+|+|+||+||+.+.|......++...++ ..++.... .....|.||+||+++++|++||+. +.|+|+.+++|+|+
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCce
Confidence 478999999999998876333333333333 33333332 566789999999999999999998 58999999999999
Q ss_pred EEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCC--CceEEEEEeeeeeecchhhccCCCC---CCceEEEeC
Q 001118 154 TVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETP--GREFLLRVSYLEIYNEVINDLLDPT---GQNLRIRED 228 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~--~~~f~V~VSylEIYNE~V~DLL~p~---~~~L~IrEd 228 (1150)
||||||+|||||||||+|+..++|||||++++||..++... +..|.|.|||+|||||.|+|||++. ...+.|+++
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~ 159 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD 159 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence 99999999999999999999999999999999999998654 4789999999999999999999986 678999999
Q ss_pred C-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCC
Q 001118 229 A-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAG 307 (1150)
Q Consensus 229 ~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAG 307 (1150)
+ .|++|.|++++.|.|++|+..+|..|..+|.++.|.+|..|||||+||+|+|.+.... ......|+|+||||||
T Consensus 160 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~----~~~~~~s~l~~VDLaG 235 (329)
T cd01366 160 SKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ----TGEQTRGKLNLVDLAG 235 (329)
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC----CCcEEEEEEEEEECCC
Confidence 9 5789999999999999999999999999999999999999999999999999876432 3457889999999999
Q ss_pred CCCC-cccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHH
Q 001118 308 SESS-KTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETH 386 (1150)
Q Consensus 308 SEr~-kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETL 386 (1150)
||+. ++++.|.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||+++|+||+||||...+++||+
T Consensus 236 sE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl 314 (329)
T cd01366 236 SERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETL 314 (329)
T ss_pred CcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHH
Confidence 9994 57888999999999999999999999999886 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhHcccccc
Q 001118 387 NTLKFAHRSKHVEI 400 (1150)
Q Consensus 387 sTLrFA~RAK~Ikn 400 (1150)
+||+||+|+++|++
T Consensus 315 ~tL~~a~~~~~i~~ 328 (329)
T cd01366 315 CSLRFASRVRSVEL 328 (329)
T ss_pred HHHHHHHHhhcccC
Confidence 99999999999976
No 21
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=4.9e-70 Score=610.47 Aligned_cols=325 Identities=46% Similarity=0.684 Sum_probs=294.4
Q ss_pred CeeeeeecCCCCcccccCCCeEEEeeCCC---eEEecC---CCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCC
Q 001118 79 NVMVTVRFRPLSPREVNKGDEIAWYADGD---YTVRNE---YNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGIN 152 (1150)
Q Consensus 79 ~VrV~VRVRPl~~~E~~~g~~v~~~~d~~---~~v~~~---~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN 152 (1150)
+|+|+|||||+...|...+...++...+. .++... ......|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 58999999999999876665555544332 333222 234578999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCC-CceEEEEEeeeeeecchhhccCCCCCCceEEEeCCC-
Q 001118 153 GTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQ- 230 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~-~~~f~V~VSylEIYNE~V~DLL~p~~~~L~IrEd~~- 230 (1150)
+||||||+|||||||||+|+..++|||||++++||..+.... +..|.|+|||+|||+|.|+|||++....+.|++++.
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~ 160 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKG 160 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCC
Confidence 999999999999999999999999999999999999997654 578999999999999999999999999999999986
Q ss_pred CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCCCC
Q 001118 231 GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSES 310 (1150)
Q Consensus 231 Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGSEr 310 (1150)
|++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+.... ........|+|+||||||+|+
T Consensus 161 ~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~--~~~~~~~~s~l~~VDLaGse~ 238 (335)
T smart00129 161 GVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN--SSSGSGKASKLNLVDLAGSER 238 (335)
T ss_pred CEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC--CCCCCEEEEEEEEEECCCCCc
Confidence 799999999999999999999999999999999999999999999999999976332 234567889999999999999
Q ss_pred C-cccccchhcccccccchhHHHHHHHHHHhccC-CCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHHH
Q 001118 311 S-KTETTGLRRKEGSYINKSLLTLGTVISKLTDE-KATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNT 388 (1150)
Q Consensus 311 ~-kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~-k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsT 388 (1150)
. +.++.|.+++|+..||+||.+|++||.+|+++ +..|||||+|+||+||+++|||+++|+||+||+|...+++||++|
T Consensus 239 ~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~t 318 (335)
T smart00129 239 ASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLST 318 (335)
T ss_pred cccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHH
Confidence 5 47788999999999999999999999999985 567999999999999999999999999999999999999999999
Q ss_pred HHHHhHccccccccccc
Q 001118 389 LKFAHRSKHVEIKASQN 405 (1150)
Q Consensus 389 LrFA~RAK~Iknk~~vN 405 (1150)
|+||.|+++|+++|++|
T Consensus 319 L~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 319 LRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHhhcccCCCcC
Confidence 99999999999999875
No 22
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.7e-71 Score=666.61 Aligned_cols=325 Identities=40% Similarity=0.546 Sum_probs=288.1
Q ss_pred CCCCeeeeeecCCCCcccccCCCeEEEeeCC--CeEEecCCCCc----eeEeeeeeeCCCCcchhHHHHHHHHHHHHhhc
Q 001118 76 SKENVMVTVRFRPLSPREVNKGDEIAWYADG--DYTVRNEYNPS----IAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQ 149 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~--~~~v~~~~~~s----~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~ 149 (1150)
-+|||||+|||||+.+.+.......+...++ ...+....... ..|.||+||+|.++|++||..+ .|+|.++|+
T Consensus 312 LkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~lD 390 (670)
T KOG0239|consen 312 LKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV-SPLVQSALD 390 (670)
T ss_pred hhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH-HHHHHHHhc
Confidence 4899999999999999987653333322222 22333222222 2599999999999999999865 699999999
Q ss_pred CCCeEEEEeccCCCCCceeecC-CCCCCCchhhHHHHHHHhhhcCC-CceEEEEEeeeeeecchhhccCCCC--CCceEE
Q 001118 150 GINGTVFAYGVTSSGKTHTMHG-EQKSPGIIPLAVKDVFGIIQETP-GREFLLRVSYLEIYNEVINDLLDPT--GQNLRI 225 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM~G-~~~~~GIIPRal~dLF~~I~~~~-~~~f~V~VSylEIYNE~V~DLL~p~--~~~L~I 225 (1150)
|||+||||||||||||||||.| ++.++|||||+++.||..++... ++.|.+.+||+|||||.|+|||++. ...+.|
T Consensus 391 GYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I 470 (670)
T KOG0239|consen 391 GYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEI 470 (670)
T ss_pred CcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeE
Confidence 9999999999999999999999 79999999999999999997543 6899999999999999999999887 478999
Q ss_pred EeCCC-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEee
Q 001118 226 REDAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLID 304 (1150)
Q Consensus 226 rEd~~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVD 304 (1150)
++++. +.+|.+++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|... +...+....+.|+|||
T Consensus 471 ~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~----~~~t~~~~~g~l~LVD 546 (670)
T KOG0239|consen 471 VDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI----NELTGIRVTGVLNLVD 546 (670)
T ss_pred EEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc----ccCcccccccceeEee
Confidence 99985 589999999999999999999999999999999999999999999999999644 3445567789999999
Q ss_pred cCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHH
Q 001118 305 LAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSE 383 (1150)
Q Consensus 305 LAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~e 383 (1150)
|||||| .+++.+|+|++|+.+||+||++||.||.||+. +..||||||||||+||||||||+++|+|+++|||...++.
T Consensus 547 LAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~ 625 (670)
T KOG0239|consen 547 LAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALF 625 (670)
T ss_pred cccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHh
Confidence 999999 67999999999999999999999999999998 4589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHcccccccccccc
Q 001118 384 ETHNTLKFAHRSKHVEIKASQNK 406 (1150)
Q Consensus 384 ETLsTLrFA~RAK~Iknk~~vN~ 406 (1150)
||+++|+||.|++.+...+....
T Consensus 626 Etl~sL~FA~rv~~~~lG~a~~~ 648 (670)
T KOG0239|consen 626 ETLCSLRFATRVRSVELGSARKQ 648 (670)
T ss_pred hhhhccchHHHhhceeccccccc
Confidence 99999999999999988766543
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=6e-69 Score=599.21 Aligned_cols=315 Identities=47% Similarity=0.711 Sum_probs=283.7
Q ss_pred CeeeeeecCCCCcccccCCCeEEEeeCC-CeEEecCC-----CCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCC
Q 001118 79 NVMVTVRFRPLSPREVNKGDEIAWYADG-DYTVRNEY-----NPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGIN 152 (1150)
Q Consensus 79 ~VrV~VRVRPl~~~E~~~g~~v~~~~d~-~~~v~~~~-----~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN 152 (1150)
+|+|+||+||+...|...+ ..++..++ ..++.... .....|.||+||+++++|++||+.++.|+|+++++|+|
T Consensus 1 ~i~V~vRvrP~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSE-ESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCcccccCC-CcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 5999999999988773333 33444444 44443332 23578999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCC--CceEEEEEeeeeeecchhhccCCCC--CCceEEEeC
Q 001118 153 GTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETP--GREFLLRVSYLEIYNEVINDLLDPT--GQNLRIRED 228 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~--~~~f~V~VSylEIYNE~V~DLL~p~--~~~L~IrEd 228 (1150)
+||||||+|||||||||+|+..++|||||++++||..+.... ...|.|.+||+|||+|.|+|||++. ...+.|+++
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~ 159 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLRED 159 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEc
Confidence 999999999999999999999999999999999999998765 5789999999999999999999997 889999999
Q ss_pred C-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCC
Q 001118 229 A-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAG 307 (1150)
Q Consensus 229 ~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAG 307 (1150)
+ .|++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+...... ......|+|+||||||
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~--~~~~~~s~l~~VDLaG 237 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTND--GRSIKSSKLNLVDLAG 237 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCC--CccEEEEEEEEEECCC
Confidence 9 579999999999999999999999999999999999999999999999999998754322 1247889999999999
Q ss_pred CCCC-cccccchhcccccccchhHHHHHHHHHHhccCC-CCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHH
Q 001118 308 SESS-KTETTGLRRKEGSYINKSLLTLGTVISKLTDEK-ATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEET 385 (1150)
Q Consensus 308 SEr~-kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k-~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eET 385 (1150)
+|+. +.+..+.+++|+..||+||.+|++||.+|+.++ ..|||||+||||+||||+|||+++|+||+||+|...+++||
T Consensus 238 se~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eT 317 (328)
T cd00106 238 SERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDET 317 (328)
T ss_pred CCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHH
Confidence 9994 567889999999999999999999999999866 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHcc
Q 001118 386 HNTLKFAHRSK 396 (1150)
Q Consensus 386 LsTLrFA~RAK 396 (1150)
++||+||+|||
T Consensus 318 l~tL~~a~r~~ 328 (328)
T cd00106 318 LSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHhcC
Confidence 99999999986
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.3e-70 Score=612.16 Aligned_cols=314 Identities=44% Similarity=0.690 Sum_probs=277.9
Q ss_pred ecCCCCcccccCCCeEEEeeCCC---e-EE---ecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEE
Q 001118 85 RFRPLSPREVNKGDEIAWYADGD---Y-TV---RNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFA 157 (1150)
Q Consensus 85 RVRPl~~~E~~~g~~v~~~~d~~---~-~v---~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfA 157 (1150)
||||+++.|...+....+..... . .. .........|.||+||+++++|++||+.++.|+|+.+++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 89999999988887766654321 1 11 11233456899999999999999999999999999999999999999
Q ss_pred eccCCCCCceeecCC--CCCCCchhhHHHHHHHhhhcCCC---ceEEEEEeeeeeecchhhccCCCC----CCceEEEeC
Q 001118 158 YGVTSSGKTHTMHGE--QKSPGIIPLAVKDVFGIIQETPG---REFLLRVSYLEIYNEVINDLLDPT----GQNLRIRED 228 (1150)
Q Consensus 158 YGQTGSGKTyTM~G~--~~~~GIIPRal~dLF~~I~~~~~---~~f~V~VSylEIYNE~V~DLL~p~----~~~L~IrEd 228 (1150)
||+|||||||||+|+ ..++|||||++++||..+..... ..|.|+|||+|||||.|+|||++. ...+.|+++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 88999999999999999987654 589999999999999999999987 357999999
Q ss_pred CC-C-cEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecC
Q 001118 229 AQ-G-TYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLA 306 (1150)
Q Consensus 229 ~~-G-v~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLA 306 (1150)
+. | ++|.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|+|.+..............|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 96 6 899999999999999999999999999999999999999999999999999876554332223688999999999
Q ss_pred CCCCCc-ccc-cchhcccccccchhHHHHHHHHHHhccC-CCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHH
Q 001118 307 GSESSK-TET-TGLRRKEGSYINKSLLTLGTVISKLTDE-KATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSE 383 (1150)
Q Consensus 307 GSEr~k-t~a-~G~RlkEg~~INkSL~ALG~VIsALa~~-k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~e 383 (1150)
|+|+.+ .++ .+.+.+|+..||+||.+|++||.+|+.+ +..|||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 999954 444 4788999999999999999999999987 5689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHcccc
Q 001118 384 ETHNTLKFAHRSKHV 398 (1150)
Q Consensus 384 ETLsTLrFA~RAK~I 398 (1150)
||++||+||.|+|+|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999986
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.9e-68 Score=602.57 Aligned_cols=319 Identities=35% Similarity=0.532 Sum_probs=279.6
Q ss_pred CCCCeeeeeecCCCCcccccCCCe-EEEeeCCCeEEecCC---------CCceeEeeeeeeCCCCcchhHHHHHHHHHHH
Q 001118 76 SKENVMVTVRFRPLSPREVNKGDE-IAWYADGDYTVRNEY---------NPSIAYGFDKVFGPATTTRHVYDVAAQHVVN 145 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~~-v~~~~d~~~~v~~~~---------~~s~~F~FD~VF~~~atQeeVYe~vv~plV~ 145 (1150)
...+|.||||-||++..|....+. ++..+..+.++...+ -..+.|.||++|++.++++.||..+++|||.
T Consensus 206 ~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~ 285 (676)
T KOG0246|consen 206 NEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVK 285 (676)
T ss_pred ccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHH
Confidence 356899999999999999765543 333334444444332 2346899999999999999999999999999
Q ss_pred HhhcCCCeEEEEeccCCCCCceeecCCCC------CCCchhhHHHHHHHhhhcC--CCceEEEEEeeeeeecchhhccCC
Q 001118 146 GAMQGINGTVFAYGVTSSGKTHTMHGEQK------SPGIIPLAVKDVFGIIQET--PGREFLLRVSYLEIYNEVINDLLD 217 (1150)
Q Consensus 146 ~vL~GyN~tIfAYGQTGSGKTyTM~G~~~------~~GIIPRal~dLF~~I~~~--~~~~f~V~VSylEIYNE~V~DLL~ 217 (1150)
.+|+|.-+|+||||||||||||||.|+-. ..||.-++.+|+|..+..- ....+.|++||||||+.+|||||+
T Consensus 286 ~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~ 365 (676)
T KOG0246|consen 286 TIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLN 365 (676)
T ss_pred HHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhc
Confidence 99999999999999999999999998742 4699999999999998642 245789999999999999999999
Q ss_pred CCCCceEEEeCCCC-cEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceE
Q 001118 218 PTGQNLRIREDAQG-TYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVT 296 (1150)
Q Consensus 218 p~~~~L~IrEd~~G-v~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~ 296 (1150)
+ +..|.+.||.++ +.|.||++..|.++++++.+|..|+..|+++.|..|..|||||+||+|.+... .....
T Consensus 366 ~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~-------~~~k~ 437 (676)
T KOG0246|consen 366 D-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH-------GEFKL 437 (676)
T ss_pred c-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC-------Cccee
Confidence 7 557999999865 88999999999999999999999999999999999999999999999999643 22467
Q ss_pred EEEEEEeecCCCCCCc--ccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCC-CccceeEE
Q 001118 297 LSQLNLIDLAGSESSK--TETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSG-HGRISLIC 373 (1150)
Q Consensus 297 ~SkL~LVDLAGSEr~k--t~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGG-NskT~mIa 373 (1150)
+||+.||||||+||+. +.++.++..||..|||||+||..||.||... +.|+|||.||||.+|+|||-| |++||||+
T Consensus 438 hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~n-k~H~PFR~SKLTqVLRDSFIGenSrTcMIA 516 (676)
T KOG0246|consen 438 HGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRN-KSHLPFRGSKLTQVLRDSFIGENSRTCMIA 516 (676)
T ss_pred EeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCC-CCCCCchhhhHHHHHHHhhcCCCCceEEEE
Confidence 8999999999999953 5677778889999999999999999999765 489999999999999999999 99999999
Q ss_pred eeCCCCCCHHHHHHHHHHHhHccccccccc
Q 001118 374 TVTPASSNSEETHNTLKFAHRSKHVEIKAS 403 (1150)
Q Consensus 374 tISPs~~~~eETLsTLrFA~RAK~Iknk~~ 403 (1150)
||||....++.||+|||||+|+|.......
T Consensus 517 ~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 517 TISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred EeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999997755433
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3e-66 Score=603.48 Aligned_cols=328 Identities=39% Similarity=0.618 Sum_probs=284.6
Q ss_pred CCCCCCeeeeeecCCCCcccccCCCeEEEeeCCCeEEe------------cCCCCceeEeeeeeeCCCCcchhHHHHHHH
Q 001118 74 SKSKENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVR------------NEYNPSIAYGFDKVFGPATTTRHVYDVAAQ 141 (1150)
Q Consensus 74 ~~~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~------------~~~~~s~~F~FD~VF~~~atQeeVYe~vv~ 141 (1150)
...++.|.|+||+||+.+...+.|+..+ .+...++. +.......|.|-+||+|.++|.+||+.++.
T Consensus 27 ~~~~d~v~v~~rvrP~~~~~~~~g~l~v--~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~ 104 (809)
T KOG0247|consen 27 CESKDPVLVVCRVRPLSDASEDEGCLRV--INEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVA 104 (809)
T ss_pred hhhhcchheeEeecCCCCCccccceEEE--eccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhH
Confidence 4457889999999999863323333222 22222221 222234679999999999999999999999
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhc-----------------------------
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQE----------------------------- 192 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~----------------------------- 192 (1150)
|+|.+++.|.|..+|+||.|||||||||+|++..+||+||+++-||..|+.
T Consensus 105 plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lk 184 (809)
T KOG0247|consen 105 PLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLK 184 (809)
T ss_pred HHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999987763
Q ss_pred -----------C-------------------------CCceEEEEEeeeeeecchhhccCCCCC-----Cc-eEEEeCCC
Q 001118 193 -----------T-------------------------PGREFLLRVSYLEIYNEVINDLLDPTG-----QN-LRIREDAQ 230 (1150)
Q Consensus 193 -----------~-------------------------~~~~f~V~VSylEIYNE~V~DLL~p~~-----~~-L~IrEd~~ 230 (1150)
. .+..|.|+|||+|||||.|||||.+.+ +. ..+++|.+
T Consensus 185 r~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~ 264 (809)
T KOG0247|consen 185 REAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTN 264 (809)
T ss_pred hhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccC
Confidence 0 123589999999999999999998753 22 56778887
Q ss_pred C-cEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCCC
Q 001118 231 G-TYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSE 309 (1150)
Q Consensus 231 G-v~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGSE 309 (1150)
| .||.|+++|.|.+.+|++.+|..|.++|++++|..|..|||||+||+|.|.+.+... +...+++|.|.||||||||
T Consensus 265 ~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~--~s~~i~vSqlsLvDLAGSE 342 (809)
T KOG0247|consen 265 GNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ--DSNQITVSQLSLVDLAGSE 342 (809)
T ss_pred CCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc--ccCceeEEeeeeeecccch
Confidence 6 799999999999999999999999999999999999999999999999999876652 3567889999999999999
Q ss_pred C-CcccccchhcccccccchhHHHHHHHHHHhccC----CCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHH
Q 001118 310 S-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDE----KATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEE 384 (1150)
Q Consensus 310 r-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~----k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eE 384 (1150)
| .+|+++|.|++|+++||.||++||+||.+|..+ ...+|||||||||++++.+|.|..+++||+||+|...+|+|
T Consensus 343 Rt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdE 422 (809)
T KOG0247|consen 343 RTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDE 422 (809)
T ss_pred hcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHH
Confidence 9 579999999999999999999999999999763 23699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHccccccccccc
Q 001118 385 THNTLKFAHRSKHVEIKASQN 405 (1150)
Q Consensus 385 TLsTLrFA~RAK~Iknk~~vN 405 (1150)
+++.|+||.-|..|.+...++
T Consensus 423 nl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 423 NLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHHHHHhcccccccCccc
Confidence 999999999999998865553
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-65 Score=613.30 Aligned_cols=339 Identities=39% Similarity=0.547 Sum_probs=297.2
Q ss_pred cCCCCcccccCCCeEEEe-eCCCeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCC
Q 001118 86 FRPLSPREVNKGDEIAWY-ADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSG 164 (1150)
Q Consensus 86 VRPl~~~E~~~g~~v~~~-~d~~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSG 164 (1150)
|||+...|...|+..++. ..+...|..+ ...+|+||+||.....|.++|+.++.|+++.+|.|||+|++||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig--~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsg 78 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG--KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSG 78 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec--CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCC
Confidence 699999999888876654 3444444333 3457999999999999999999999999999999999999999999999
Q ss_pred CceeecCC----CCCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCCC--CceEEEeCCCC-cEEeCc
Q 001118 165 KTHTMHGE----QKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG--QNLRIREDAQG-TYVEGI 237 (1150)
Q Consensus 165 KTyTM~G~----~~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~~--~~L~IrEd~~G-v~V~GL 237 (1150)
|||||.+. .+..|||||+++++|..|.......|.|.|||+|||++.|+|||.|.. .++.+++ ++| +.+.|+
T Consensus 79 kTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~gl 157 (913)
T KOG0244|consen 79 KTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRGL 157 (913)
T ss_pred ceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEee
Confidence 99999876 334699999999999999988888999999999999999999999654 4577888 554 899999
Q ss_pred EEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCCCC-Cccccc
Q 001118 238 KEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETT 316 (1150)
Q Consensus 238 sev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGSEr-~kt~a~ 316 (1150)
+++.|.+..+++..|..|.-.|++++|+||..|||||+||+|.+++..... ......+||+||||||||| .+|+++
T Consensus 158 te~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~---~~s~~~sKlhlVDLAGSER~kkT~a~ 234 (913)
T KOG0244|consen 158 TEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLS---KRSSFCSKLHLVDLAGSERVKKTKAE 234 (913)
T ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhh---ccchhhhhhheeeccccccccccccc
Confidence 999999999999999999999999999999999999999999998754332 2335679999999999999 569999
Q ss_pred chhcccccccchhHHHHHHHHHHhccCC-CCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHhHc
Q 001118 317 GLRRKEGSYINKSLLTLGTVISKLTDEK-ATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRS 395 (1150)
Q Consensus 317 G~RlkEg~~INkSL~ALG~VIsALa~~k-~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLrFA~RA 395 (1150)
|+|++||++||.+|++||+||+||.+.+ ..|||||||||||||||+||||++|+||+||||+..+..||++||+||.||
T Consensus 235 gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Ra 314 (913)
T KOG0244|consen 235 GDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRA 314 (913)
T ss_pred hhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHH
Confidence 9999999999999999999999998754 469999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 001118 396 KHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQQL 431 (1150)
Q Consensus 396 K~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~l 431 (1150)
+.|+|+|++|.. .....+..++.+|+.|+.+|-..
T Consensus 315 k~iknk~vvN~d-~~~~~~~~lK~ql~~l~~ell~~ 349 (913)
T KOG0244|consen 315 KQIKNKPVVNQD-PKSFEMLKLKAQLEPLQVELLSK 349 (913)
T ss_pred HHhccccccccc-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999982 22344556666666666666554
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-61 Score=573.63 Aligned_cols=342 Identities=43% Similarity=0.646 Sum_probs=290.9
Q ss_pred CCCCCeeeeeecCCCCcccccCCCeEEEeeCCCeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeE
Q 001118 75 KSKENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGT 154 (1150)
Q Consensus 75 ~~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~t 154 (1150)
..-.+++++++..|-...+ ..+.......+.........|.||+||++.++|++||+..++|+++.++.|||||
T Consensus 19 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~T 92 (568)
T COG5059 19 KSVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCT 92 (568)
T ss_pred eeecCceEEEeecCCCcch------heeecccccccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccce
Confidence 3456789999999854332 2222322222222222256799999999999999999999999999999999999
Q ss_pred EEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCC-CceEEEEEeeeeeecchhhccCCCCCCceEEEeCC-CCc
Q 001118 155 VFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDA-QGT 232 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~-~~~f~V~VSylEIYNE~V~DLL~p~~~~L~IrEd~-~Gv 232 (1150)
|||||||||||||||.|....+||||+++.+||+.+.... +..|.|.|||+|||||+++|||.+....+.++++. .|+
T Consensus 93 vfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v 172 (568)
T COG5059 93 VFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGV 172 (568)
T ss_pred EEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCce
Confidence 9999999999999999999999999999999999987543 46799999999999999999999988778888887 479
Q ss_pred EEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCCCCC-
Q 001118 233 YVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSESS- 311 (1150)
Q Consensus 233 ~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGSEr~- 311 (1150)
+|.|++++.|.+.++++.+|..|..+|+++.|.+|..|||||+||++.+.+...... ....++|+||||||||+.
T Consensus 173 ~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~----~~~~~~l~lvDLagSE~~~ 248 (568)
T COG5059 173 KVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG----TSETSKLSLVDLAGSERAA 248 (568)
T ss_pred EeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc----ceecceEEEEeeccccccc
Confidence 999999999999999999999999999999999999999999999999987644322 223379999999999994
Q ss_pred cccccchhcccccccchhHHHHHHHHHHhcc-CCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHHHHH
Q 001118 312 KTETTGLRRKEGSYINKSLLTLGTVISKLTD-EKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLK 390 (1150)
Q Consensus 312 kt~a~G~RlkEg~~INkSL~ALG~VIsALa~-~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLr 390 (1150)
.++..+.|++||..||+||++||+||++|.+ ++..|||||+|||||+||++|||+++|+|||||+|...++++|++||+
T Consensus 249 ~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~ 328 (568)
T COG5059 249 RTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLK 328 (568)
T ss_pred hhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHH
Confidence 5788999999999999999999999999987 456899999999999999999999999999999999999999999999
Q ss_pred HHhHccccccccccccccCHHHHHHHHHHHHHHHHH
Q 001118 391 FAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQ 426 (1150)
Q Consensus 391 FA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~ 426 (1150)
||.||+.|++++..|...+-..-+..+...+...+.
T Consensus 329 ~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 364 (568)
T COG5059 329 FASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRS 364 (568)
T ss_pred HHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhh
Confidence 999999999999999532222233334333333333
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=6.1e-49 Score=408.05 Aligned_cols=178 Identities=41% Similarity=0.664 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhc
Q 001118 135 VYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVIND 214 (1150)
Q Consensus 135 VYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~D 214 (1150)
||+.++ |+|+.+++|||+||||||||||||||||+|++.++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 99999999999999999999999999999999999999999987
Q ss_pred cCCCCCCceEEEeCCCCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcc
Q 001118 215 LLDPTGQNLRIREDAQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEED 294 (1150)
Q Consensus 215 LL~p~~~~L~IrEd~~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~ 294 (1150)
++.+|..|..+|.++.|.+|..|||||+||+|+|.+...... +...
T Consensus 58 ---------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~-~~~~ 103 (186)
T cd01363 58 ---------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS-ATEQ 103 (186)
T ss_pred ---------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCC-Cccc
Confidence 788999999999999999999999999999999987654332 2355
Q ss_pred eEEEEEEEeecCCCCCC-cccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEE
Q 001118 295 VTLSQLNLIDLAGSESS-KTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLIC 373 (1150)
Q Consensus 295 v~~SkL~LVDLAGSEr~-kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIa 373 (1150)
...|+|+||||||||+. +++..+.+++|+..||+||.+|++||.+|+.+. .||||||||||+||||+|||||+|+||+
T Consensus 104 ~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~-~~vpyr~SkLT~lL~~~L~g~~~t~~i~ 182 (186)
T cd01363 104 PKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERD-SHVPYRESKLTRLLQDSLGGNSRTLMVA 182 (186)
T ss_pred eeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCC-CCCCCcccHHHHHHHHhcCCCCeEEEEE
Confidence 67899999999999994 577889999999999999999999999998754 7999999999999999999999999999
Q ss_pred eeCC
Q 001118 374 TVTP 377 (1150)
Q Consensus 374 tISP 377 (1150)
||||
T Consensus 183 ~vsP 186 (186)
T cd01363 183 CISP 186 (186)
T ss_pred EeCc
Confidence 9998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.63 E-value=5.2e-07 Score=109.79 Aligned_cols=245 Identities=20% Similarity=0.229 Sum_probs=147.3
Q ss_pred CCeeeeeecCCCCcccccC---------CC--eEEEeeCCCeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHH
Q 001118 78 ENVMVTVRFRPLSPREVNK---------GD--EIAWYADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNG 146 (1150)
Q Consensus 78 ~~VrV~VRVRPl~~~E~~~---------g~--~v~~~~d~~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~ 146 (1150)
.+++|+|+|+|........ .. .......+. .........|.||.+|.+...+..++... .-+++.
T Consensus 305 ~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~ 380 (568)
T COG5059 305 CNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS---SDSSREIEEIKFDLSEDRSEIEILVFREQ-SQLSQS 380 (568)
T ss_pred ccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc---CcchHHHHHHHhhhhhhhhhhhhHHHHHH-Hhhhhh
Confidence 3999999999987442110 00 000001100 00112234699999999999998888754 356777
Q ss_pred hhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCC--CceEEEEEeeeeeecchhhccCCCCC-Cce
Q 001118 147 AMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETP--GREFLLRVSYLEIYNEVINDLLDPTG-QNL 223 (1150)
Q Consensus 147 vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~--~~~f~V~VSylEIYNE~V~DLL~p~~-~~L 223 (1150)
.++| +++||++++|+++||. ....++.+-.+...|..+.... .+.+...+-++++|-....++..... ...
T Consensus 381 ~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 454 (568)
T COG5059 381 SLSG----IFAYMQSLKKETETLK--SRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKK 454 (568)
T ss_pred hhhh----HHHHHhhhhhhhhccc--chhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence 7777 9999999999999996 3334666666677787765433 23344445566666222222221110 000
Q ss_pred EE-EeCC--CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEE
Q 001118 224 RI-REDA--QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQL 300 (1150)
Q Consensus 224 ~I-rEd~--~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL 300 (1150)
.. .... ....+.-++ .......+..... .....+..+.+..|.+++++|++|+....... ...... . +
T Consensus 455 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~~~~~--~-~ 525 (568)
T COG5059 455 TKIHKLNKLRHDLSSLLS-SIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSN----SSTKEL--S-L 525 (568)
T ss_pred HHHHHHHHHHHHHHHhhh-hcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchh----hhhHHH--H-h
Confidence 00 0000 000000000 0111111122222 56778889999999999999999988774221 111111 1 7
Q ss_pred EEeecCCCCCCcccccchhcccccccchhHHHHHHHHHHhc
Q 001118 301 NLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLT 341 (1150)
Q Consensus 301 ~LVDLAGSEr~kt~a~G~RlkEg~~INkSL~ALG~VIsALa 341 (1150)
+.|||||+|+.-...-|.++++..++|++|..+|.+|.++.
T Consensus 526 n~~~~~~~e~~~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 526 NQVDLAGSERKVSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhhccccccchhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 99999999987556778999999999999999999998763
No 31
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.91 E-value=0.43 Score=62.58 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Q 001118 991 DLEAALSEREQVEGELRKRIDEAKRHEEDLENELANMWVLIAKM 1034 (1150)
Q Consensus 991 ~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmwvlvakl 1034 (1150)
.++..+.+.+..-..++..+++.+.+...|+++++.++.....+
T Consensus 459 ~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~ 502 (1164)
T TIGR02169 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444455556666666666666666666666554443
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.32 E-value=1.4 Score=54.32 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHH
Q 001118 977 ELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLENELANMW 1028 (1150)
Q Consensus 977 ~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmw 1028 (1150)
+.++||.. -+++|..+=+||+|+.+|-|--.+...+=|+-|+------|
T Consensus 414 E~~rel~E---lks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~ 462 (546)
T PF07888_consen 414 ENRRELQE---LKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKW 462 (546)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 66777764 56778888899999999888888888777777765433344
No 33
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.11 E-value=4.1 Score=53.69 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=11.8
Q ss_pred EEeccCCCCCceee
Q 001118 156 FAYGVTSSGKTHTM 169 (1150)
Q Consensus 156 fAYGQTGSGKTyTM 169 (1150)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 45899999999876
No 34
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.09 E-value=1.5 Score=59.54 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=54.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHH
Q 001118 704 KLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQE 783 (1150)
Q Consensus 704 ~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe 783 (1150)
.+..||...+.||..|+.....++. ..++.+|-.++..+..+|+--.+.+--+|++.++...++.+||.
T Consensus 796 r~~~ei~~l~~qie~l~~~l~~~~~-----------~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ 864 (1311)
T TIGR00606 796 RFQMELKDVERKIAQQAAKLQGSDL-----------DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKS 864 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc-----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366666666666666666654433 12556666667766677766566666678888888888888888
Q ss_pred HHHHHHHHHHHhh
Q 001118 784 TILLLRQQIDSLS 796 (1150)
Q Consensus 784 ~v~~l~qql~~~~ 796 (1150)
++..++.....+.
T Consensus 865 ki~el~~~klkl~ 877 (1311)
T TIGR00606 865 KTNELKSEKLQIG 877 (1311)
T ss_pred HHHHHHHHHHHHH
Confidence 8777776654433
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.95 E-value=0.35 Score=61.19 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=22.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHh
Q 001118 700 EHMQKLKDEISEKKLQIRVLEQRM 723 (1150)
Q Consensus 700 ~~~~~l~~ei~~k~~q~~~le~~i 723 (1150)
.|+++|..|++.|..|++.||..+
T Consensus 552 ~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 552 SELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999987
No 36
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.70 E-value=3.7 Score=53.96 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=13.7
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
+.+-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4567899999999887
No 37
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.68 E-value=9.3 Score=48.86 Aligned_cols=188 Identities=20% Similarity=0.292 Sum_probs=122.0
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcccccc
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLST 736 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~ 736 (1150)
.+..|.-|..|+.-++-|++-=.++|.- .|++.+.-+.+......+|..|-.++.-... .....
T Consensus 263 ~~~EiqKL~qQL~qve~EK~~L~~~L~e-------------~Q~qLe~a~~als~q~eki~~L~e~l~aL~~-l~~~k-- 326 (717)
T PF09730_consen 263 NLSEIQKLKQQLLQVEREKSSLLSNLQE-------------SQKQLEHAQGALSEQQEKINRLTEQLDALRK-LQEDK-- 326 (717)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccch--
Confidence 3467889999999999999998888843 3577888888888888888888877543322 11111
Q ss_pred chhhh--HHHHHHHhhcc-cchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhccCCCCccccccCCCC
Q 001118 737 TEMSQ--ALSKLTTQLNE-KTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLSNKMSGSPEQMAENDGIP 813 (1150)
Q Consensus 737 ~e~~q--~~~~l~~qlne-k~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~ 813 (1150)
+... .-.+-.....+ -.|++-|+. +.||+-.+..-+.|+..|+..+..|+..+...=..-
T Consensus 327 -e~~~~~d~~~~~~s~~d~~~ye~Di~~--~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~-------------- 389 (717)
T PF09730_consen 327 -EQQSAEDSEKERDSHEDGDYYEVDING--LEILECKYKVAVSEVIQLKAELKALKSKYNELEERY-------------- 389 (717)
T ss_pred -hhhhhhhcccccccccccchhhhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 1110 00111111111 235665655 889999999999999999999999999876543211
Q ss_pred CCCCchhhhhhhhccccCCCCCccccccCCCCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhh-------h
Q 001118 814 LKPCSEEISQQKNAWRNGLGSCEETFVDEHTPTSVMSLNRIFSHEESNLNSQVLMQAAEIENLKQERVKLVE-------E 886 (1150)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~eie~lk~~~~~l~e-------~ 886 (1150)
...+. .+ ..++.+|+.++..+.- .
T Consensus 390 --------~~ek~----------------------------------~~-------~~e~q~L~ekl~~lek~~re~qer 420 (717)
T PF09730_consen 390 --------KQEKD----------------------------------RL-------ESEVQNLKEKLMSLEKSSREDQER 420 (717)
T ss_pred --------HHHHH----------------------------------HH-------HHHHHHHHHHHHHHHHhhhhhHHH
Confidence 00000 01 2445555555555443 4
Q ss_pred ccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhh
Q 001118 887 RDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLS 926 (1150)
Q Consensus 887 k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~ 926 (1150)
-..|+...+.+..-|.=+-+=-++|.=||-.+++|.+.|=
T Consensus 421 i~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLY 460 (717)
T PF09730_consen 421 ISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLY 460 (717)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677766666666666778888999999888773
No 38
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.67 E-value=5 Score=52.73 Aligned_cols=7 Identities=14% Similarity=0.430 Sum_probs=3.4
Q ss_pred cCCcccc
Q 001118 564 RGMLGWF 570 (1150)
Q Consensus 564 ~g~l~w~ 570 (1150)
.|...|+
T Consensus 570 ~g~~~~l 576 (1179)
T TIGR02168 570 LGRVTFL 576 (1179)
T ss_pred CCcEEEe
Confidence 4555444
No 39
>PRK11637 AmiB activator; Provisional
Probab=95.65 E-value=0.28 Score=58.42 Aligned_cols=90 Identities=12% Similarity=0.196 Sum_probs=51.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhh
Q 001118 696 SQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKI 775 (1150)
Q Consensus 696 ~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~ 775 (1150)
..++.+++.++.+|+.++.+|..+.+++.+ +...+..|..|++.-.-+|.-..++=..++.++....
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~-------------~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~ 109 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRAS-------------LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN 109 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777776666653 2222333333333332223233333345666777777
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhc
Q 001118 776 SENTEMQETILLLRQQIDSLSNK 798 (1150)
Q Consensus 776 ~e~~elqe~v~~l~qql~~~~~~ 798 (1150)
.++.++|+.|..++.+|...+..
T Consensus 110 ~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 110 ASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777665543
No 40
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=95.58 E-value=0.0029 Score=78.81 Aligned_cols=298 Identities=23% Similarity=0.274 Sum_probs=144.6
Q ss_pred CceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCCC
Q 001118 116 PSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPG 195 (1150)
Q Consensus 116 ~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~~ 195 (1150)
+...|.|+.+......+..-+... .+.+..++++++.. +|++|++.+.....|++-+....++......+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (670)
T KOG0239|consen 24 PKKRFELARVYSPSVGQPSLFSDV-QPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKT 94 (670)
T ss_pred cccccCccccccccccccccCCcc-ccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCC
Confidence 344577777776544333222211 13344555555554 899999999998888888887777765433332
Q ss_pred ceEEEEEeeeeeecchhhccCCCCCCceEEEeCCCCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceE
Q 001118 196 REFLLRVSYLEIYNEVINDLLDPTGQNLRIREDAQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHT 275 (1150)
Q Consensus 196 ~~f~V~VSylEIYNE~V~DLL~p~~~~L~IrEd~~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHa 275 (1150)
.. .++.|++.+.|++......+.--...-......+..........+..++.....++....... .+
T Consensus 95 ~~------~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~----~~--- 161 (670)
T KOG0239|consen 95 SN------VVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLS----KV--- 161 (670)
T ss_pred ch------hHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhcccccccc----cc---
Confidence 22 678899999999865432211100000111222333333344444444443332222111100 00
Q ss_pred EEEEEEEeecCCCCCCCcceEEEEEEEeecCCCCCCcccccchhcccccccchhHHHHH-HHHHHhccCCCCcccCCCch
Q 001118 276 IFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLG-TVISKLTDEKATHIPYRDSK 354 (1150)
Q Consensus 276 IFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGSEr~kt~a~G~RlkEg~~INkSL~ALG-~VIsALa~~k~~hIPYRDSK 354 (1150)
.......++|+|+.+..+- ...+..+.... .|........ ..--+...
T Consensus 162 -------------------~~~~~~~~~~~~~k~~~~~----------~~~~~~~~~~l~~v~~~~~~~~--~~l~~~~~ 210 (670)
T KOG0239|consen 162 -------------------TPENSLSLLDLALKESLKL----------ESDLGDLVTELEHVTNSISELE--SVLKSAQE 210 (670)
T ss_pred -------------------chhhhHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHH--HHhhhhHH
Confidence 0001112666776653211 11112221111 1111111000 00001455
Q ss_pred hhhhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHhHccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001118 355 LTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQQLKRG 434 (1150)
Q Consensus 355 LTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk~~ 434 (1150)
.++.|.+.+| .|+...+.++.-..... ..+..+..++.++..|+..+..++..
T Consensus 211 ~~~~l~~~~~-------------------------~~~~~~~~~~~l~~~~~--~~~~~i~~l~~~l~~l~~~~~~l~~~ 263 (670)
T KOG0239|consen 211 ERRVLADSLG-------------------------NYADLRRNIKPLEGLES--TIKKKIQALQQELEELKAELKELNDQ 263 (670)
T ss_pred HHHHHHHHhh-------------------------hhhhHHHhhhhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777776 44444444433222221 12233666777777777776665543
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001118 435 MMDNPHMAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKAALLGRIQRLTKLILVSTKN 494 (1150)
Q Consensus 435 ~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~Lee~ee~~~~L~~~i~~L~k~il~s~~~ 494 (1150)
..............+..+..+++..+..|..+. .++.++.+|.++|++|...|-+--+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~CRv 322 (670)
T KOG0239|consen 264 VSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRVFCRV 322 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEEEEe
Confidence 221110000011122233555666666777777 77788899999999998888665544
No 41
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.46 E-value=0.6 Score=53.61 Aligned_cols=136 Identities=25% Similarity=0.290 Sum_probs=106.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHH
Q 001118 858 EESNLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELA 937 (1150)
Q Consensus 858 ~~~~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~ 937 (1150)
+...|..++..-+.|+..|+.+.++|..+...+|.+-|.|..+ -+|+|+ .|-..+..|++|+++-+.+|.+.-.|+.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d--cv~QL~-~An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD--CVKQLS-EANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH--HHHHhh-hcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778899999999999999999999999999999 499995 5678999999999999999999999988
Q ss_pred HHHhhhcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 001118 938 AAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAK 1014 (1150)
Q Consensus 938 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k 1014 (1150)
.......- -..+-......-++|+.-|.+.++....|-+=|.+-..+=+|...-+.|+.
T Consensus 238 ~Llsqivd------------------lQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 238 SLLSQIVD------------------LQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHH------------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77655410 000112234456789999999999988888888777777777666665554
No 42
>PRK02224 chromosome segregation protein; Provisional
Probab=95.10 E-value=6.7 Score=50.88 Aligned_cols=134 Identities=15% Similarity=0.209 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHH--HHhcCC------cchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSE--QAASNS------EDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVE 728 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e--~A~~~p------~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~ 728 (1150)
.-..++.|++.+..+.+.+.+....|+.+-. ....-| .+..+..-+..+.+.|+....++..||.++.+.-.
T Consensus 417 l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 496 (880)
T PRK02224 417 LREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEE 496 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777652 122112 12222222333444444444444444443321111
Q ss_pred cCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 001118 729 RTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLSN 797 (1150)
Q Consensus 729 ~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 797 (1150)
.-...-...+....+.+|-.++++ +..- ---..++|.....++.+|++++..|++.+..+..
T Consensus 497 ~~e~l~~~~~~~~~l~~l~~~~~~------l~~~-~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~ 558 (880)
T PRK02224 497 RLERAEDLVEAEDRIERLEERRED------LEEL-IAERRETIEEKRERAEELRERAAELEAEAEEKRE 558 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000012333444444444331 1110 0112367777788888888888888877766554
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.52 E-value=1 Score=55.03 Aligned_cols=70 Identities=11% Similarity=0.253 Sum_probs=55.4
Q ss_pred chhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q 001118 656 TITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSV 727 (1150)
Q Consensus 656 ~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~ 727 (1150)
..-.+++.|+.+++.+..+++-.+..+.++.++.. ..-..++.++..+.++....+.|+..|+..|.+..
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~--~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG--ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34457788888888888888887777888877654 44556778888999999999999999999887766
No 44
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.44 E-value=7.1 Score=53.93 Aligned_cols=253 Identities=25% Similarity=0.310 Sum_probs=159.0
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHh------cCCcchHHHHHH--------------HHhHHHHHHHHHHH
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAA------SNSEDSQLREHM--------------QKLKDEISEKKLQI 716 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~------~~p~~~~i~~~~--------------~~l~~ei~~k~~q~ 716 (1150)
.=+++..+.+++-+|.-.-.+--.-+.-++..++ .-+-+++++.-+ ..++.|....++|.
T Consensus 1104 Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~ 1183 (1822)
T KOG4674|consen 1104 LEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQV 1183 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3456666666666666555554455555555533 222344554433 44566667778888
Q ss_pred HHHHHHhhhc---ccc----CccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Q 001118 717 RVLEQRMIGS---VER----TPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLR 789 (1150)
Q Consensus 717 ~~le~~i~~s---~~~----s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~ 789 (1150)
+.+++-|-+- +-+ +...+...+=--.|++.++++| +=--+|+||++-+.....-|+||+++|..|+
T Consensus 1184 ~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vN-------ll~EsN~~LRee~~~~~~k~qEl~~~i~kl~ 1256 (1822)
T KOG4674|consen 1184 ASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVN-------LLRESNKVLREENEANLEKIQELRDKIEKLN 1256 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887754331 111 1112222222337888888888 3346899999999999999999999999999
Q ss_pred HHHHHhhhccCCCCccccccCCCCCCCCchhhhhhhhccccCCCCCccccccCCCCcccccccccccccccchhhHHHHH
Q 001118 790 QQIDSLSNKMSGSPEQMAENDGIPLKPCSEEISQQKNAWRNGLGSCEETFVDEHTPTSVMSLNRIFSHEESNLNSQVLMQ 869 (1150)
Q Consensus 790 qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 869 (1150)
.-+.-+= .....|
T Consensus 1257 ~el~plq------------------------------------------------------------~~l~el------- 1269 (1822)
T KOG4674|consen 1257 FELAPLQ------------------------------------------------------------NELKEL------- 1269 (1822)
T ss_pred hhHhhHH------------------------------------------------------------HHHHHH-------
Confidence 8863210 011112
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhhhhhhhh------hhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhh
Q 001118 870 AAEIENLKQERVKLVEERDGLEIHSQKLAEE------ASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEAL 943 (1150)
Q Consensus 870 ~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee------~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~ 943 (1150)
.++|.....++..|-++.+.-..|||=|.+= ..|=| |++ |..+|.+|.+-.-++|+-|..++--.|+..
T Consensus 1270 ~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~k-L~~----ei~~Lk~el~~ke~~~~el~~~~~~~q~~~ 1344 (1822)
T KOG4674|consen 1270 KAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEK-LKS----EISRLKEELEEKENLIAELKKELNRLQEKI 1344 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566666667777777664 33443 444 999999999988888888888888777443
Q ss_pred cccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001118 944 SRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGELRKR 1009 (1150)
Q Consensus 944 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~ 1009 (1150)
.-. -.+......++.+++..-..--..|++++.|+-+.+-|+..+
T Consensus 1345 k~q---------------------ld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~ 1389 (1822)
T KOG4674|consen 1345 KKQ---------------------LDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDK 1389 (1822)
T ss_pred HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 011133456677777766666778899998888876666554
No 45
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.99 E-value=18 Score=48.90 Aligned_cols=97 Identities=26% Similarity=0.276 Sum_probs=50.7
Q ss_pred HHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHH
Q 001118 912 AVELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREAD 991 (1150)
Q Consensus 912 avElk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~ 991 (1150)
--++..|.++.++|+.+.+.+..++......... .+.+-......+..+...+.....+-..
T Consensus 403 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 464 (1163)
T COG1196 403 KREIESLEERLERLSERLEDLKEELKELEAELEE------------------LQTELEELNEELEELEEQLEELRDRLKE 464 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655543310 0000001122233444445555555555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhh
Q 001118 992 LEAALSEREQVEGELRKRIDEAKRHEEDLENELAN 1026 (1150)
Q Consensus 992 ~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lan 1026 (1150)
+|..+.+.......+...+.+.+.+-..||...-.
T Consensus 465 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 499 (1163)
T COG1196 465 LERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555555555666666666666666666666554
No 46
>PRK02224 chromosome segregation protein; Provisional
Probab=93.77 E-value=13 Score=48.38 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHh
Q 001118 1004 GELRKRIDEAKRHEEDLENELANMWVLIAKMR 1035 (1150)
Q Consensus 1004 ~e~~~~~~e~k~~e~~len~lanmwvlvaklk 1035 (1150)
.+++..+++.+.+.+.+++.++..=-.+..++
T Consensus 415 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 415 EELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555554
No 47
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.68 E-value=6.7 Score=50.10 Aligned_cols=101 Identities=28% Similarity=0.322 Sum_probs=66.9
Q ss_pred hhhhhhhhhhhHHHHHhHHH-----------------HHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcc
Q 001118 893 HSQKLAEEASYAKELASSAA-----------------VELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPY 955 (1150)
Q Consensus 893 ~nqkl~ee~syaK~LAsaaa-----------------vElk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~ 955 (1150)
+.+|..||.+-|+-+|.|++ -|+|.|--|....-.+...|..|+...|...
T Consensus 515 rk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~------------ 582 (697)
T PF09726_consen 515 RKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE------------ 582 (697)
T ss_pred HHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 44677777776765544433 2455666666666666666666665444321
Q ss_pred cccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 001118 956 EFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEE 1018 (1150)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~ 1018 (1150)
.++.-+.|.|-..|++-.++-.-||..|+.--.+.-+|=.-+-+||..=+
T Consensus 583 -------------~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~e 632 (697)
T PF09726_consen 583 -------------KESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLE 632 (697)
T ss_pred -------------hhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12345678999999999999999999999888887777555555554433
No 48
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.12 E-value=0.34 Score=60.59 Aligned_cols=6 Identities=0% Similarity=0.401 Sum_probs=2.4
Q ss_pred chhHHH
Q 001118 132 TRHVYD 137 (1150)
Q Consensus 132 QeeVYe 137 (1150)
+.++|.
T Consensus 655 n~dlfa 660 (1102)
T KOG1924|consen 655 NDDLFA 660 (1102)
T ss_pred chHHHH
Confidence 344443
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.02 E-value=20 Score=40.85 Aligned_cols=57 Identities=33% Similarity=0.407 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Q 001118 975 VEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLENELANMWVLIAKM 1034 (1150)
Q Consensus 975 ~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmwvlvakl 1034 (1150)
+..|+.|+..-+.+..+||..|.+- +..+....+.-...-+.||.||+.|+.=++..
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~l---e~~~~~~~~~~~~~i~~le~el~~l~~~~~~~ 281 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLREL---EQRLDEEREEYQAEIAELEEELAELREEMARQ 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHH---HHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 3467777777777788888887764 45666667777777888888888888766554
No 50
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.88 E-value=2.2 Score=51.73 Aligned_cols=121 Identities=26% Similarity=0.245 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhhhhh----hhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhc
Q 001118 869 QAAEIENLKQERVKLVEERDGLEIHSQKL----AEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEALS 944 (1150)
Q Consensus 869 q~~eie~lk~~~~~l~e~k~~l~~~nqkl----~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~~ 944 (1150)
-..||.-|.++.+.|.-|----+.+-|-| .-|-.|+--=|+..--||-.+..|...+|-+|.||-++|+.++...
T Consensus 171 ~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~- 249 (596)
T KOG4360|consen 171 LEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKI- 249 (596)
T ss_pred hHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-
Confidence 35677777777776654433333332222 2455666666777778899999999999999999999999887665
Q ss_pred ccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 001118 945 RSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAK 1014 (1150)
Q Consensus 945 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k 1014 (1150)
..-.+..++|..=|++.+++..-|+|-+.|-+-+++|+-.-+.|+.
T Consensus 250 ------------------------k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eae 295 (596)
T KOG4360|consen 250 ------------------------KYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAE 295 (596)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234556788899999999999999999999999998888777763
No 51
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.57 E-value=15 Score=51.60 Aligned_cols=148 Identities=26% Similarity=0.332 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccc
Q 001118 870 AAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFC 949 (1150)
Q Consensus 870 ~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~ 949 (1150)
..|+..|..++..+.-.+..++..-.++-..-+=+..-.+-.--=+..|+...++|+++|..|+..|.-+-...+ +
T Consensus 1216 q~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~----~ 1291 (1930)
T KOG0161|consen 1216 QREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLS----A 1291 (1930)
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHH----H
Confidence 446666666666666666666555533322222222222211111222445577788888888777655443221 0
Q ss_pred cCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHHH
Q 001118 950 QRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLENELANMWV 1029 (1150)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmwv 1029 (1150)
. -+....-....+++|++|.+-..+..+|+.++..-+.=-..|+.++||.----+.|+..|.---+
T Consensus 1292 -------------~-~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~ 1357 (1930)
T KOG0161|consen 1292 -------------L-SRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANA 1357 (1930)
T ss_pred -------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111223356789999999999999999999877777788888888887777777777765555
Q ss_pred HHHHHh
Q 001118 1030 LIAKMR 1035 (1150)
Q Consensus 1030 lvaklk 1035 (1150)
-++.-|
T Consensus 1358 e~~~~~ 1363 (1930)
T KOG0161|consen 1358 ELAQWK 1363 (1930)
T ss_pred HHHHHH
Confidence 555543
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.45 E-value=21 Score=43.76 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=24.1
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001118 762 ADNRILQEQLQMKISENTEMQETILLLRQQIDSL 795 (1150)
Q Consensus 762 adnrilqeql~~k~~e~~elqe~v~~l~qql~~~ 795 (1150)
++..-+++++..-..++..++..+..|+.+|.+.
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777777777777443
No 53
>PRK09039 hypothetical protein; Validated
Probab=92.40 E-value=9.9 Score=44.65 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHH
Q 001118 704 KLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQE 783 (1150)
Q Consensus 704 ~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe 783 (1150)
-|.++|.+++.+++.|+.+|.+ |=|.|..-...+..||+
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~-----------------------------------------L~e~L~le~~~~~~l~~ 81 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAE-----------------------------------------LADLLSLERQGNQDLQD 81 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH-----------------------------------------HHHHHHHHHHHHhhHHH
Confidence 5788888999999999998855 33456667788888899
Q ss_pred HHHHHHHHHHHhh
Q 001118 784 TILLLRQQIDSLS 796 (1150)
Q Consensus 784 ~v~~l~qql~~~~ 796 (1150)
.|..|+.|+..+.
T Consensus 82 ~l~~l~~~l~~a~ 94 (343)
T PRK09039 82 SVANLRASLSAAE 94 (343)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888886544
No 54
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.80 E-value=19 Score=49.34 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=59.9
Q ss_pred hhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHH---HH
Q 001118 672 AGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKL---TT 748 (1150)
Q Consensus 672 ~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l---~~ 748 (1150)
..|+.-....|++|.......-.+ ..++.|+.+|..++.++..|...+....... -.+...|..| ..
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~~----~s~~ele~ei~~~~~el~~l~~~~e~l~~e~------e~~~~eI~~Lq~ki~ 867 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDLD----RTVQQVNQEKQEKQHELDTVVSKIELNRKLI------QDQQEQIQHLKSKTN 867 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhcccccc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 344444455555555544433222 1355566666666666666665554443321 1223344444 22
Q ss_pred hhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001118 749 QLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSL 795 (1150)
Q Consensus 749 qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~ 795 (1150)
.+.++-..|.-+-..=.=|+++|.....++.++.++|..++++|..+
T Consensus 868 el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~ 914 (1311)
T TIGR00606 868 ELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL 914 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22222222222223344577777888888888888888888776443
No 55
>PRK06893 DNA replication initiation factor; Validated
Probab=91.33 E-value=0.16 Score=55.45 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=32.5
Q ss_pred eeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 118 IAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 118 ~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..++||..++... .. .+..+...+-.++|..++-||++|+||||.+.
T Consensus 11 ~~~~fd~f~~~~~-~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 11 DDETLDNFYADNN-LL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CcccccccccCCh-HH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 3588999996542 21 12222333345788889999999999999886
No 56
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.30 E-value=27 Score=48.74 Aligned_cols=111 Identities=18% Similarity=0.255 Sum_probs=71.2
Q ss_pred HHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccc---cch---hhh
Q 001118 668 MKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLS---TTE---MSQ 741 (1150)
Q Consensus 668 ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~---~~e---~~q 741 (1150)
++-|.+..-+.-.+...++++...+-++- ..++.++..+|.....++.-|+.+|...-........ +.+ ..+
T Consensus 828 ~r~l~~~~~~~l~~~~~~i~~~~~~~~~~--~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~ 905 (1822)
T KOG4674|consen 828 LRELTNSLEKQLENAQNLVDELESELKSL--LTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILED 905 (1822)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhH
Confidence 34444455555566677777777765544 4777888888888888888888888765444333222 222 223
Q ss_pred HHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001118 742 ALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDS 794 (1150)
Q Consensus 742 ~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 794 (1150)
++.....|.+ .|+++|..-.+++.++|+.+-.+.|=|..
T Consensus 906 ~Lr~~~eq~~--------------~l~~~L~~a~s~i~~yqe~~~s~eqsl~~ 944 (1822)
T KOG4674|consen 906 TLRKELEEIT--------------DLKEELTDALSQIREYQEEYSSLEQSLES 944 (1822)
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 47788888888888888888888776654
No 57
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.17 E-value=60 Score=46.08 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCcee
Q 001118 134 HVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 134 eVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyT 168 (1150)
.||. ++.......+ ++-|-+|++.|-+|+|||-.
T Consensus 150 HIfa-vad~AYr~mL~~renQSiLiTGESGAGKTeN 184 (1930)
T KOG0161|consen 150 HIFA-VADEAYRNMLQDRENQSILITGESGAGKTEN 184 (1930)
T ss_pred hHHH-HHHHHHHHHHhcCCCceEeeecCCCCCcchh
Confidence 3553 3334444444 78899999999999999964
No 58
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.12 E-value=45 Score=45.25 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=17.3
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+++-.+..|+++- -||.||||+-.+
T Consensus 17 ~~~i~f~~~~t~I---vGPNGSGKSNI~ 41 (1163)
T COG1196 17 PTEINFSPGFTAI---VGPNGSGKSNIV 41 (1163)
T ss_pred CeeeecCCCCeEE---ECCCCCchHHHH
Confidence 3344456677764 499999998765
No 59
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.98 E-value=38 Score=45.48 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHh
Q 001118 862 LNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKE 941 (1150)
Q Consensus 862 ~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~ 941 (1150)
+..+++....+...+-.....|.+.+..|.-.|.+|.-++---++.-...--+.++|-+++.-|-..|..+..++.-+..
T Consensus 572 ~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 572 LSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred hhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 44555555566677788888888888888888888877777677777777888889999999999999999999888877
No 60
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.50 E-value=65 Score=41.62 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=63.9
Q ss_pred CCCchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhc-CCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCc
Q 001118 653 SGTTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAAS-NSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTP 731 (1150)
Q Consensus 653 ~~~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~-~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~ 731 (1150)
.+......|+-|+--+|-+--+++=.++=.+||.-.... .-+.+.++.|...|++||++-|.- |.|++.-..-
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~r----E~rll~dyse-- 101 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFR----EARLLQDYSE-- 101 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHH--
Confidence 456677888889999999998888888889998766543 344666778888999999987754 5555533222
Q ss_pred cccccchhhhHHHHHHH
Q 001118 732 HTLSTTEMSQALSKLTT 748 (1150)
Q Consensus 732 ~~~~~~e~~q~~~~l~~ 748 (1150)
=.-.++.|+..|+-|..
T Consensus 102 lEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 102 LEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 12245677777777654
No 61
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.45 E-value=0.91 Score=56.74 Aligned_cols=49 Identities=35% Similarity=0.514 Sum_probs=33.8
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|+||..+-... +..+|. .+..+++..-.+||. ||-||.+|+||||-+.
T Consensus 284 ~~TFDnFvvG~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 284 KYTFDTFVIGAS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCHhhhcCCCc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 589988764333 444553 444555544456776 8999999999999986
No 62
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=90.31 E-value=0.51 Score=57.50 Aligned_cols=88 Identities=25% Similarity=0.410 Sum_probs=55.8
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeecCC---CCCCCchh----hHHHHHHHhhh
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGE---QKSPGIIP----LAVKDVFGIIQ 191 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~---~~~~GIIP----Ral~dLF~~I~ 191 (1150)
.|..-.-|.|.-+|-.- ...+|+.+-.|.-.-+ -.|.|||||||||-.- -.-|-||- -.+..||+...
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 47777778899888654 3466676666654443 4699999999999531 11122221 12345555544
Q ss_pred c-CCCceEEEEEeeeeeecch
Q 001118 192 E-TPGREFLLRVSYLEIYNEV 211 (1150)
Q Consensus 192 ~-~~~~~f~V~VSylEIYNE~ 211 (1150)
+ .|+..+...|||+..|.-.
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPE 99 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPE 99 (663)
T ss_pred HhCcCcceEEEeeeccccCcc
Confidence 3 3666677789999999644
No 63
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.26 E-value=57 Score=40.56 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhccC
Q 001118 766 ILQEQLQMKISENTEMQETILLLRQQIDSLSNKMS 800 (1150)
Q Consensus 766 ilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~ 800 (1150)
..++|...-++|..-..+.+..|++++..+++.++
T Consensus 120 ~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~ 154 (522)
T PF05701_consen 120 SAREQYASAVAELDSVKQELEKLRQELASALDAKN 154 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999998764
No 64
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.25 E-value=0.12 Score=56.29 Aligned_cols=49 Identities=29% Similarity=0.491 Sum_probs=29.7
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|+||.-+.. ..++..|. .+..+.+.--..||. +|-||++|+||||-|.
T Consensus 4 ~~tFdnfv~g-~~N~~a~~-~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYA-AAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp T-SCCCS--T-TTTHHHHH-HHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCccccCCcC-CcHHHHHH-HHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 5899987753 34556664 333444442223444 7889999999999765
No 65
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.07 E-value=9.5 Score=45.87 Aligned_cols=63 Identities=25% Similarity=0.316 Sum_probs=42.5
Q ss_pred HHHHHhhhccchhhh-hhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 001118 879 ERVKLVEERDGLEIH-SQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEALSR 945 (1150)
Q Consensus 879 ~~~~l~e~k~~l~~~-nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~~r 945 (1150)
+...+.+|+.+++.+ |+-|..+..+.++|+.-++ +|..++.++-.++++-...-++++....|
T Consensus 200 kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~----~L~~~Ias~e~~aA~~re~~aa~~aa~~~ 263 (420)
T COG4942 200 KLAQLLEERKKTLAQLNSELSADQKKLEELRANES----RLKNEIASAEAAAAKAREAAAAAEAAAAR 263 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555554 4457778889999987764 68889999999999665555555555444
No 66
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.94 E-value=67 Score=40.90 Aligned_cols=106 Identities=22% Similarity=0.252 Sum_probs=61.3
Q ss_pred HhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCcccccc-ccccccHHHHHHHHHHHH
Q 001118 908 ASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRK-TEDGLLVEELQKELSSRY 986 (1150)
Q Consensus 908 AsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~el~~~~ 986 (1150)
+--+--||+..-+....+.-||.-|.+.|.....+. .|...++..-..+ +...+ .+-.++..+.
T Consensus 281 ~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~------------eg~~~~~~~~~ee~~~~~~---~ipEd~es~E 345 (617)
T PF15070_consen 281 LEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPG------------EGDGLESESEEEEAPQPMP---SIPEDLESRE 345 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCC------------CCcccccccccccccCcCc---ccccccccHH
Confidence 334446888888999999999999999987654332 1111111111111 11111 1122333333
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHH
Q 001118 987 QREADLEAALSEREQVEGELRKRIDEAKRHEEDLENELANMW 1028 (1150)
Q Consensus 987 ~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmw 1028 (1150)
.-.+.+..|+..-+.-.++|++.+++-+.+-..|-..+|..|
T Consensus 346 ~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q 387 (617)
T PF15070_consen 346 AMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQ 387 (617)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 334556666666666677888889988877776766666544
No 67
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.92 E-value=11 Score=47.49 Aligned_cols=264 Identities=23% Similarity=0.224 Sum_probs=128.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchh-----------hH-
Q 001118 699 REHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADN-----------RI- 766 (1150)
Q Consensus 699 ~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adn-----------ri- 766 (1150)
|.+..|+..+|+..++-|..=|+|+..+-.+ + .+-+-+|+|-+.=.+-+|++.- ||
T Consensus 345 q~eLdK~~~~i~~Ln~~leaReaqll~~e~~---k---------a~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva 412 (961)
T KOG4673|consen 345 QLELDKTKKEIKMLNNALEAREAQLLADEIA---K---------AMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVA 412 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---------HHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHH
Confidence 3556666666666666555555554322111 1 1112345555544444444322 11
Q ss_pred -HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhccCCCCccccccCCCCCCCCchhhhhhhhccccCCCCCccccccCCCC
Q 001118 767 -LQEQLQMKISENTEMQETILLLRQQIDSLSNKMSGSPEQMAENDGIPLKPCSEEISQQKNAWRNGLGSCEETFVDEHTP 845 (1150)
Q Consensus 767 -lqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (1150)
|.-..|.-|-|-..|.-.+.+||..|+.+|-+- ..-.||.-|+.+-
T Consensus 413 ~lEkKvqa~~kERDalr~e~kslk~ela~~l~~D---------------------eLaEkdE~I~~lm------------ 459 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSLKKELAAALLKD---------------------ELAEKDEIINQLM------------ 459 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhH---------------------HHHHHHHHHHHHH------------
Confidence 233344456667778888888888888877441 0111222222211
Q ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh--hhccchhhhhhhhhhhhhhHHH-HHhHHHHH------HH
Q 001118 846 TSVMSLNRIFSHEESNLNSQVLMQAAEIENLKQERVKLV--EERDGLEIHSQKLAEEASYAKE-LASSAAVE------LR 916 (1150)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~q~~eie~lk~~~~~l~--e~k~~l~~~nqkl~ee~syaK~-LAsaaavE------lk 916 (1150)
.+...|.++.+.|.+-|.+|.-+..+-- ++|.| -+-.||.+|.-.-|. |+.--+|| ++
T Consensus 460 -----------~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~g--e~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~ 526 (961)
T KOG4673|consen 460 -----------AEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKG--ELITKLQSEENKLKSILRDKEETEKLLQETIE 526 (961)
T ss_pred -----------HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhh--hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1233455666778888888876544332 34433 123466677666654 34444454 34
Q ss_pred hhHHHHHHhhhhhhhhhhHHHHHHhhh---cccccccCCCcccccccCC-ccccccccccccHHHHHHHHHHHHHHHHHH
Q 001118 917 NLAEEVTRLSYENAKLNSELAAAKEAL---SRSNFCQRSAPYEFKQSNS-NGARRKTEDGLLVEELQKELSSRYQREADL 992 (1150)
Q Consensus 917 ~laeevtkl~~qN~kl~~el~~~~~~~---~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~el~~~~~re~~~ 992 (1150)
.+--|||+--..|.++-+..++..... .+...+-|++..-..|-.- ..|-+..+-..-|+|||--|+-..|--+.=
T Consensus 527 k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarr 606 (961)
T KOG4673|consen 527 KHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARR 606 (961)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444333332222 2344443332100000000 111122233445677777666444433334
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhhh
Q 001118 993 EAALSEREQVEGELRKRIDEAKRHEEDLENE 1023 (1150)
Q Consensus 993 e~~l~ek~~~e~e~~~~~~e~k~~e~~len~ 1023 (1150)
|..+.+. -.+|++++++|..|-..|=-+
T Consensus 607 Ed~~R~E---i~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 607 EDMFRGE---IEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 4443322 257888888888776655443
No 68
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.88 E-value=48 Score=46.10 Aligned_cols=155 Identities=21% Similarity=0.279 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhh-hhHHHHHhHH-------HHHHHhhHHHHHHhhhhhhhhhhH
Q 001118 864 SQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEA-SYAKELASSA-------AVELRNLAEEVTRLSYENAKLNSE 935 (1150)
Q Consensus 864 ~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~-syaK~LAsaa-------avElk~laeevtkl~~qN~kl~~e 935 (1150)
.++.....++.+|+++...+....++++.....+.-+. .-.-.=|.-+ +-+++.|++-+--|-.+=..|...
T Consensus 449 aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (1486)
T PRK04863 449 AKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQR 528 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34445667888888888888888888877766554332 2222223333 345677777777777777777666
Q ss_pred HHHHHhhhc-ccccccCCCcccccccCCccccccccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 001118 936 LAAAKEALS-RSNFCQRSAPYEFKQSNSNGARRKTEDGL-LVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEA 1013 (1150)
Q Consensus 936 l~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~ 1013 (1150)
|...+.... ..-.+ + + ....+ +++++.......-++--.|+..+.+-.++-.+++.+.++-
T Consensus 529 ~~~q~~~~~~~~~~~---------~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL 591 (1486)
T PRK04863 529 LRQQQRAERLLAEFC---------K------R--LGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQL 591 (1486)
T ss_pred HHHHHHHHHHHHHHH---------H------H--hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554442 11111 0 0 01111 2334444433333344467777777777888888888888
Q ss_pred hhhhhhhhhhhhhHHHH----HHHHhh
Q 001118 1014 KRHEEDLENELANMWVL----IAKMRN 1036 (1150)
Q Consensus 1014 k~~e~~len~lanmwvl----vaklk~ 1036 (1150)
+++=..|+. +|--|.- +.+|..
T Consensus 592 ~~~i~~l~~-~ap~W~~a~~al~~L~e 617 (1486)
T PRK04863 592 QARIQRLAA-RAPAWLAAQDALARLRE 617 (1486)
T ss_pred HHHHHHHHH-hChHHHhhHHHHHHHHH
Confidence 888777776 4555752 455553
No 69
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.02 E-value=17 Score=39.57 Aligned_cols=59 Identities=32% Similarity=0.390 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhh
Q 001118 870 AAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEA 942 (1150)
Q Consensus 870 ~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~ 942 (1150)
..|+|.||.-...|-|++.+|-.++.-|-.| -..|..+|..|-.+|.||..|..-.+..
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE--------------~q~L~~~i~~Lqeen~kl~~e~~~lk~~ 124 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKE--------------QQSLVAEIETLQEENGKLLAERDGLKKR 124 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 4699999999999999998888887666554 4678899999999999998887766543
No 70
>PRK03918 chromosome segregation protein; Provisional
Probab=88.99 E-value=86 Score=40.84 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=11.0
Q ss_pred EEeccCCCCCceee
Q 001118 156 FAYGVTSSGKTHTM 169 (1150)
Q Consensus 156 fAYGQTGSGKTyTM 169 (1150)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 36899999998754
No 71
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=88.74 E-value=47 Score=42.79 Aligned_cols=33 Identities=9% Similarity=0.081 Sum_probs=25.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 001118 767 LQEQLQMKISENTEMQETILLLRQQIDSLSNKM 799 (1150)
Q Consensus 767 lqeql~~k~~e~~elqe~v~~l~qql~~~~~~~ 799 (1150)
+.+|+|+|+.|+.++--..-.+-+|+..++..+
T Consensus 181 ~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~n 213 (1265)
T KOG0976|consen 181 FNMEFQTKLAEANREKKALEEKLEKFKEDLIEK 213 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 457888888888888877777778887777655
No 72
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.16 E-value=0.26 Score=56.59 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 140 AQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 140 v~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+|..+.+--++.|+..|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 4678888889999999999999999999984
No 73
>PRK11637 AmiB activator; Provisional
Probab=88.15 E-value=31 Score=41.48 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=16.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001118 767 LQEQLQMKISENTEMQETILLLRQQIDSL 795 (1150)
Q Consensus 767 lqeql~~k~~e~~elqe~v~~l~qql~~~ 795 (1150)
+++||++.-.++.+++..+..++.++.++
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~ 73 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASL 73 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555443
No 74
>PRK09039 hypothetical protein; Validated
Probab=88.05 E-value=13 Score=43.67 Aligned_cols=42 Identities=31% Similarity=0.411 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 001118 975 VEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRH 1016 (1150)
Q Consensus 975 ~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~ 1016 (1150)
+.-|+.++.+=+..=++||++|.+-+++.++.+.+|++-+++
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666778888888777777777777776543
No 75
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.68 E-value=19 Score=41.08 Aligned_cols=47 Identities=34% Similarity=0.347 Sum_probs=35.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHh
Q 001118 860 SNLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRN 917 (1150)
Q Consensus 860 ~~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~ 917 (1150)
..|.++...+..-|-.|+++...+.+++..|+ -.|.||.++|-+.++
T Consensus 186 ~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~-----------~qka~a~a~a~~~a~ 232 (265)
T COG3883 186 NSLNSQKAEKNALIAALAAKEASALGEKAALE-----------EQKALAEAAAAEAAK 232 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 44666666778889999999999999999998 345666666666554
No 76
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=87.44 E-value=1.3e+02 Score=41.16 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhh
Q 001118 870 AAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEA 942 (1150)
Q Consensus 870 ~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~ 942 (1150)
..+++.+...+..+.+..+.++.+-++...+-.=++.-.+-+.+++++.-..+..|..+-..|..++..++..
T Consensus 606 ~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 678 (1201)
T PF12128_consen 606 RERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEE 678 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666665555555666677777777777777777777777777666665544
No 77
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=87.43 E-value=2.9 Score=44.97 Aligned_cols=95 Identities=26% Similarity=0.291 Sum_probs=74.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhc-ccc--CccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhh
Q 001118 701 HMQKLKDEISEKKLQIRVLEQRMIGS-VER--TPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISE 777 (1150)
Q Consensus 701 ~~~~l~~ei~~k~~q~~~le~~i~~s-~~~--s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e 777 (1150)
-|.+|...|..-++.++-||+++..+ ... ++......+.+..+.++..+|-|.-.-.+==+.=|-+|-|||.+-...
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~ 96 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKA 96 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999544 111 111334456677888888888887654433344499999999999999
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 001118 778 NTEMQETILLLRQQIDSL 795 (1150)
Q Consensus 778 ~~elqe~v~~l~qql~~~ 795 (1150)
|..|++.+..|.+++..+
T Consensus 97 N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 97 NEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998874
No 78
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.24 E-value=0.54 Score=57.12 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=26.3
Q ss_pred HHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 141 QHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 141 ~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
...+..++..-+|.|+.-|+||||||.||+
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 345667888889999999999999999997
No 79
>PRK06620 hypothetical protein; Validated
Probab=86.69 E-value=0.3 Score=53.15 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=32.4
Q ss_pred eeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCC---eEEEEeccCCCCCceeec
Q 001118 118 IAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGIN---GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 118 ~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN---~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+||..+...+. ...|..+. .+.+. -|+| -.++-||++||||||.+.
T Consensus 11 ~~~tfd~Fvvg~~N-~~a~~~~~-~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSSSN-DQAYNIIK-NWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEecccH-HHHHHHHH-HHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 46899987764444 45665443 22221 1444 358999999999999986
No 80
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=85.62 E-value=73 Score=40.24 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=53.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhh
Q 001118 698 LREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISE 777 (1150)
Q Consensus 698 i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e 777 (1150)
....+..|.++-...+.|+..||..|..-..+--++ +-.+..+-.+-- =|+-+|+|-=-+|=.-|.--.+-
T Consensus 180 ~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t------~~el~~~~s~~d---ee~~~k~aev~lim~eLe~aq~r 250 (629)
T KOG0963|consen 180 WAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDT------QNELFDLKSKYD---EEVAAKAAEVSLIMTELEDAQQR 250 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 346678888998899999999999886543321111 111111222200 01123333333444445555566
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 001118 778 NTEMQETILLLRQQIDSLSN 797 (1150)
Q Consensus 778 ~~elqe~v~~l~qql~~~~~ 797 (1150)
+..||..|..|++|+..+-+
T Consensus 251 i~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 251 IVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 77899999999999866543
No 81
>PRK05642 DNA replication initiation factor; Validated
Probab=85.59 E-value=0.58 Score=51.40 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=28.9
Q ss_pred eeEeeeeeeCCCCcchhHHHHHHHHHHHHhhc---CC-CeEEEEeccCCCCCceeec
Q 001118 118 IAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQ---GI-NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 118 ~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~---Gy-N~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+||.-+... +..++ ..+....+ ++ ...++-||++|+||||-+.
T Consensus 14 ~~~tfdnF~~~~--~~~a~-----~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPGA--NAAAL-----GYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcCC--hHHHH-----HHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 358899888432 22233 33333322 22 2468899999999999875
No 82
>PRK06526 transposase; Provisional
Probab=84.62 E-value=0.36 Score=53.98 Aligned_cols=45 Identities=24% Similarity=0.278 Sum_probs=28.1
Q ss_pred eeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeecC
Q 001118 122 FDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHG 171 (1150)
Q Consensus 122 FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G 171 (1150)
||.-|.+.-++..+..-.....++ .+.| |+.||++|+||||.+.+
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 444455555555555433333333 3444 79999999999999863
No 83
>PRK03918 chromosome segregation protein; Provisional
Probab=84.31 E-value=1.5e+02 Score=38.79 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=11.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHH
Q 001118 771 LQMKISENTEMQETILLLRQQID 793 (1150)
Q Consensus 771 l~~k~~e~~elqe~v~~l~qql~ 793 (1150)
|..+..+..++.+.+..+.+.+.
T Consensus 520 l~~~~~~~~~l~~~~~~l~~~l~ 542 (880)
T PRK03918 520 LEKKAEEYEKLKEKLIKLKGEIK 542 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 44455555555555555554443
No 84
>PRK12377 putative replication protein; Provisional
Probab=83.60 E-value=0.75 Score=51.44 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=34.9
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+||........|..++. .+..++..+..+. ..++-||++|+||||.+.
T Consensus 71 ~tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~ 119 (248)
T PRK12377 71 CSFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAA 119 (248)
T ss_pred CCcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence 467765544556666665 4556777766654 468889999999999986
No 85
>PRK08084 DNA replication initiation factor; Provisional
Probab=83.21 E-value=0.76 Score=50.45 Aligned_cols=47 Identities=13% Similarity=0.321 Sum_probs=30.6
Q ss_pred eeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 118 IAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 118 ~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+||.-+.. .+...+..+. .++. ......++-||++|+||||.+.
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~-~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQ-NALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CcCCccccccC--ccHHHHHHHH-HHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 35788866644 5555664332 2222 2223478999999999999986
No 86
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=83.21 E-value=0.67 Score=55.92 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=31.4
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|+||.-+... ++...|. .+..++..-=..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCCC-cHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 48999866443 4455663 34444432111244 48899999999999885
No 87
>PRK09087 hypothetical protein; Validated
Probab=83.11 E-value=0.62 Score=51.11 Aligned_cols=47 Identities=28% Similarity=0.280 Sum_probs=31.5
Q ss_pred eeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 118 IAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 118 ~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+||.-+..... ..+|.. +.....-.+..++-||++||||||-+.
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCch-HHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 35889988854443 346663 333222235568999999999999986
No 88
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=82.76 E-value=0.91 Score=52.12 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHHHHhhc-CCCeEEEEeccCCCCCceeec
Q 001118 131 TTRHVYDVAAQHVVNGAMQ-GINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 131 tQeeVYe~vv~plV~~vL~-GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..++-++.+.. .+..++. +....++-||++|+|||+++.
T Consensus 19 gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 19 HRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 34444443332 3333443 456789999999999999764
No 89
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=82.70 E-value=0.66 Score=55.76 Aligned_cols=49 Identities=27% Similarity=0.400 Sum_probs=32.5
Q ss_pred eeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 118 IAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 118 ~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+||.-+.. ..+...|..+ ..+... -..||. +|-||++|+||||.|.
T Consensus 100 ~~~tFdnFv~g-~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 100 PDYTFENFVVG-PGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCcccccccC-CchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 35899987743 4455566533 333332 123675 9999999999999885
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.61 E-value=1.4e+02 Score=37.46 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=16.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 001118 696 SQLREHMQKLKDEISEKKLQIRVLEQRM 723 (1150)
Q Consensus 696 ~~i~~~~~~l~~ei~~k~~q~~~le~~i 723 (1150)
.+++.++..|+.+....+..+..|+++.
T Consensus 167 ~~l~~~v~~l~~eL~~~~ee~e~L~~~~ 194 (546)
T PF07888_consen 167 EQLREEVERLEAELEQEEEEMEQLKQQQ 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666543
No 91
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=82.57 E-value=1.7 Score=51.23 Aligned_cols=27 Identities=33% Similarity=0.581 Sum_probs=19.6
Q ss_pred HHHhhcCC-CeEEEEeccCCCCCceeec
Q 001118 144 VNGAMQGI-NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 144 V~~vL~Gy-N~tIfAYGQTGSGKTyTM~ 170 (1150)
+..++.|. ...++.||.||||||.|+.
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVK 60 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHHH
Confidence 44445444 3449999999999998863
No 92
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.45 E-value=64 Score=37.66 Aligned_cols=83 Identities=27% Similarity=0.291 Sum_probs=51.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhh
Q 001118 696 SQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKI 775 (1150)
Q Consensus 696 ~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~ 775 (1150)
..+|..++-|++|-...+.....|-.--. ..+ -.=+|-|...+.||.+-.=.+ .-|++-|-.|.
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~-~~E--------ekEqqLv~dcv~QL~~An~qi-------a~LseELa~k~ 226 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETD-TYE--------EKEQQLVLDCVKQLSEANQQI-------ASLSEELARKT 226 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHh-hcc--------HHHHHHHHHHHHHhhhcchhH-------HHHHHHHHHHH
Confidence 45556666666665555555444432111 111 112445666666665433322 34899999999
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 001118 776 SENTEMQETILLLRQQIDS 794 (1150)
Q Consensus 776 ~e~~elqe~v~~l~qql~~ 794 (1150)
-||...||+|.+|.-|+-+
T Consensus 227 Ee~~rQQEEIt~Llsqivd 245 (306)
T PF04849_consen 227 EENRRQQEEITSLLSQIVD 245 (306)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999855
No 93
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=82.18 E-value=1.8e+02 Score=38.32 Aligned_cols=128 Identities=26% Similarity=0.318 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccchhhhh---hhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHH
Q 001118 863 NSQVLMQAAEIENLKQERVKLVEERDGLEIHS---QKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAA 939 (1150)
Q Consensus 863 ~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~n---qkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~ 939 (1150)
+.+.+.++..+++||-...+|.++...|-.++ +|=+|=+--++. -+.-+..||++-|++|..+=.++..-....
T Consensus 416 e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~---~~~~~~~~L~d~le~~~~~~~~~~~K~e~~ 492 (980)
T KOG0980|consen 416 ENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSID---DVEEENTNLNDQLEELQRAAGRAETKTESQ 492 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34556677788888888888888877765443 232332223333 456677888888888887765543322221
Q ss_pred HhhhcccccccCCCcccccccCCccccccccc-cccHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHH
Q 001118 940 KEALSRSNFCQRSAPYEFKQSNSNGARRKTED-GLLVEELQKELSSRYQRE----ADLEAALSEREQVEGELRKRIDE 1012 (1150)
Q Consensus 940 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~el~~~~~re----~~~e~~l~ek~~~e~e~~~~~~e 1012 (1150)
...- ..=|++... -.-.+.|++.+.-..|+. +-||..|.+||..=+++..+.+|
T Consensus 493 ~~~l-------------------e~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e 551 (980)
T KOG0980|consen 493 AKAL-------------------ESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEE 551 (980)
T ss_pred HHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 000111111 112456667765555555 56889999999988888888753
No 94
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.93 E-value=1 Score=52.30 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceeec
Q 001118 132 TRHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 132 QeeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-++-++.+.. .+..++ .+....++-||++|+|||+++.
T Consensus 35 Re~e~~~l~~-~l~~~~~~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 35 REEQIEELAF-ALRPALRGSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred HHHHHHHHHH-HHHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence 3334444332 233334 3455678999999999999864
No 95
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=81.88 E-value=0.8 Score=46.24 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=20.3
Q ss_pred HHHHHhhcC-CCeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQG-INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~G-yN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+++.+-.+ ....++..++||||||++|.
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhh
Confidence 334443333 35667777899999999997
No 96
>PRK08116 hypothetical protein; Validated
Probab=81.74 E-value=0.91 Score=51.10 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=34.6
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhc--CCCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQ--GINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~--GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++||.-. .+..+...|. .++..++.+.. +.+..++-||.+|+||||.+.
T Consensus 81 ~~tFdnf~-~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred hcchhccc-CChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 47788654 3455555554 45566666543 345569999999999999886
No 97
>PRK04863 mukB cell division protein MukB; Provisional
Probab=81.22 E-value=1.3e+02 Score=42.06 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhc
Q 001118 989 EADLEAALSEREQVEGELRKRIDEAKRHEEDLENELANMWVLIAKMRNS 1037 (1150)
Q Consensus 989 e~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmwvlvaklk~~ 1037 (1150)
+..||+...+.+..-.+|.-..+++-++-..|...+-..=-.+.+|.+.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ 601 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555666666666666666666666666543
No 98
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=81.20 E-value=1.1 Score=42.51 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=19.4
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+...+.......++.+|++|+|||+.+.
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 3333333345578899999999998764
No 99
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=80.49 E-value=1.5 Score=46.66 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=31.6
Q ss_pred eeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 118 IAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 118 ~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+||..... .+..++..+- .++ ..+....|+-||++|+||||.+.
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l~-~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAALR-QLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHHH-HHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 35788877732 4445554332 222 24567789999999999999875
No 100
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.42 E-value=53 Score=43.71 Aligned_cols=175 Identities=20% Similarity=0.302 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcccccc
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLST 736 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~ 736 (1150)
.+.+...+-+++--|-++.|-..=+ .+..|++++.++|+.++..+..|.++|-.-...-
T Consensus 253 ~~~~~e~~~~~l~~Lk~k~~W~~V~---------------~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~------ 311 (1074)
T KOG0250|consen 253 NLEQLEDLKENLEQLKAKMAWAWVN---------------EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKI------ 311 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3455566667777777777654322 3468899999999999999999999997765442
Q ss_pred chhhhHHHHHHHhhcccchhhh---------hccchhhH-----HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhccCCC
Q 001118 737 TEMSQALSKLTTQLNEKTFELE---------IKSADNRI-----LQEQLQMKISENTEMQETILLLRQQIDSLSNKMSGS 802 (1150)
Q Consensus 737 ~e~~q~~~~l~~qlnek~fele---------ik~adnri-----lqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~ 802 (1150)
-++-|.+++.-+|+++..=|-+ .++.|+.. ++++....++.+.+++..+..|+.|+.++=+..+
T Consensus 312 ~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~-- 389 (1074)
T KOG0250|consen 312 EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN-- 389 (1074)
T ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3455666666666666543333 45555554 3667777777788888888888888766432210
Q ss_pred CccccccCCCCCCCCchhhhhhhhccccCCCCCccccccCCCCcccccccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 001118 803 PEQMAENDGIPLKPCSEEISQQKNAWRNGLGSCEETFVDEHTPTSVMSLNRIFSHEESNLNSQVLMQAAEIENLKQERVK 882 (1150)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~eie~lk~~~~~ 882 (1150)
..+.++...-+.+++.|++++..
T Consensus 390 ---------------------------------------------------------~~~~~~~~e~e~k~~~L~~evek 412 (1074)
T KOG0250|consen 390 ---------------------------------------------------------NELGSELEERENKLEQLKKEVEK 412 (1074)
T ss_pred ---------------------------------------------------------hhhhhhHHHHHHHHHHHHHHHHH
Confidence 01112222235688889999999
Q ss_pred HhhhccchhhhhhhhhhhhhhHHHHHhHH
Q 001118 883 LVEERDGLEIHSQKLAEEASYAKELASSA 911 (1150)
Q Consensus 883 l~e~k~~l~~~nqkl~ee~syaK~LAsaa 911 (1150)
+.+....|...-+.+-+++.--.+=..+.
T Consensus 413 ~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 413 LEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99988888888888887776655555444
No 101
>PRK08181 transposase; Validated
Probab=79.92 E-value=1.4 Score=49.84 Aligned_cols=45 Identities=27% Similarity=0.445 Sum_probs=27.3
Q ss_pred eeeeeCCCCcchhHHHHHH-HHHHHHhhcCCCeEEEEeccCCCCCceeecC
Q 001118 122 FDKVFGPATTTRHVYDVAA-QHVVNGAMQGINGTVFAYGVTSSGKTHTMHG 171 (1150)
Q Consensus 122 FD~VF~~~atQeeVYe~vv-~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G 171 (1150)
||.-+.+..+...+..-.. ...++ .|.| |+-||++|+||||-+.+
T Consensus 80 fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHH
Confidence 4444555555544443221 12332 4554 89999999999998864
No 102
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=79.84 E-value=1.1 Score=52.93 Aligned_cols=50 Identities=32% Similarity=0.458 Sum_probs=30.4
Q ss_pred eeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 118 IAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 118 ~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+||.-.. ...+...|. .+..+....-..|| .++-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCccccccc-CCcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 3588988442 334454554 33334433111244 47889999999999885
No 103
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=79.59 E-value=1.1 Score=53.75 Aligned_cols=49 Identities=31% Similarity=0.469 Sum_probs=30.4
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|+||.-.. ...+...|.. +..+.+..-..|| .+|-||++|+||||.+.
T Consensus 118 ~~tfd~fv~-g~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 118 KYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCccccccc-CCCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 578887443 2344445543 3334433222344 47889999999999985
No 104
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.58 E-value=1.8e+02 Score=36.62 Aligned_cols=102 Identities=19% Similarity=0.281 Sum_probs=71.3
Q ss_pred HHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHH
Q 001118 914 ELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLE 993 (1150)
Q Consensus 914 Elk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e 993 (1150)
..+.+..-++.+..+|..|..|+...+.+=. -+. ..--.+..+..+|..-..+-..++
T Consensus 311 ~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~--l~~--------------------~e~~~~~~lekeL~~Le~~~~~~~ 368 (569)
T PRK04778 311 NSDTLPDFLEHAKEQNKELKEEIDRVKQSYT--LNE--------------------SELESVRQLEKQLESLEKQYDEIT 368 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCc--------------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999999998875520 000 001123456666666666666677
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhc
Q 001118 994 AALSEREQVEGELRKRIDEAKRHEEDLENELANMWVLIAKMRNS 1037 (1150)
Q Consensus 994 ~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmwvlvaklk~~ 1037 (1150)
..+.++...=.+++..+++..++-..++++...||-.+..|++.
T Consensus 369 ~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 369 ERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788888888888888888888888888877653
No 105
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.49 E-value=13 Score=43.22 Aligned_cols=132 Identities=18% Similarity=0.225 Sum_probs=88.3
Q ss_pred CCchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccc
Q 001118 654 GTTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHT 733 (1150)
Q Consensus 654 ~~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~ 733 (1150)
-+...=|||+|.+.+--|...+|.-+..++...- +=+..+.....|..|+...+.|+...+.-|..-|.--...
T Consensus 107 k~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~------elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~ 180 (302)
T PF09738_consen 107 KSALMYQVDLLKDKLEELEETLAQLQREYREKIR------ELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPD 180 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCC
Confidence 3566789999999999999999998888753322 2355667788889999999999988877776544322211
Q ss_pred cccchhhh-------HHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001118 734 LSTTEMSQ-------ALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSL 795 (1150)
Q Consensus 734 ~~~~e~~q-------~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~ 795 (1150)
..+-|.+. +=.-+++|=+ +.+ +++|-+--|-..|...+.|.++|++.|..|++||.+-
T Consensus 181 ~~ngd~~~~~~~~~~~~~~~vs~e~---a~~-L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 181 ATNGDTSDEPNNVGHPKRALVSQEA---AQL-LESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred CCCCccccCccccCCCcccccchhh---hhh-hcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 1111111111 111 4556566667788999999999999999999999663
No 106
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=78.86 E-value=50 Score=37.34 Aligned_cols=146 Identities=25% Similarity=0.262 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccc
Q 001118 870 AAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFC 949 (1150)
Q Consensus 870 ~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~ 949 (1150)
-.+|.+|-.+..+|.....--.---.|+-.|-+=++.=. -++-.|+.+|-+|=.++..|+...+..-.|-
T Consensus 9 L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~-------~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~--- 78 (239)
T COG1579 9 LLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKAL-------EALEIELEDLENQVSQLESEIQEIRERIKRA--- 78 (239)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 345556666666665555433333334444444333333 3444455555555556677777776554210
Q ss_pred cCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHHH
Q 001118 950 QRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLENELANMWV 1029 (1150)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmwv 1029 (1150)
+.. -+..+ +.-...+|..|+..-++|..+||.-|.+-.-+.++|++.++..+-+=..+|++|+---.
T Consensus 79 -----e~k---l~~v~-----~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~ 145 (239)
T COG1579 79 -----EEK---LSAVK-----DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEA 145 (239)
T ss_pred -----HHH---Hhccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000 01124589999999999999999999999999999999999999998888888875433
Q ss_pred ----HHHHHhhcC
Q 001118 1030 ----LIAKMRNSG 1038 (1150)
Q Consensus 1030 ----lvaklk~~~ 1038 (1150)
=|+++++.|
T Consensus 146 ~~e~e~~~i~e~~ 158 (239)
T COG1579 146 RLEEEVAEIREEG 158 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 345555444
No 107
>PRK07952 DNA replication protein DnaC; Validated
Probab=78.65 E-value=1.4 Score=49.15 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=32.8
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..+||........|..++.. +..+++.+..|+ ..++-||.+|+||||.+.
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHH
Confidence 35677654444456556654 344555554443 368899999999999986
No 108
>PRK08939 primosomal protein DnaI; Reviewed
Probab=78.34 E-value=1 Score=51.85 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=32.3
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhhcC-CCeEEEEeccCCCCCceeec
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQG-INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL~G-yN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+||.+-.....+..++.. +...++....| ....|+-||++|+||||-+.
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 3455443333355666663 35666665543 23469999999999999986
No 109
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=78.31 E-value=2.5 Score=52.56 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=23.7
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+..++..-++.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4556677778999999999999999985
No 110
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.24 E-value=1.6e+02 Score=39.00 Aligned_cols=88 Identities=25% Similarity=0.361 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcch-HHHHHHHHhHHHHHHHHHHHHHHHHH-------hhhcccc
Q 001118 658 TDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDS-QLREHMQKLKDEISEKKLQIRVLEQR-------MIGSVER 729 (1150)
Q Consensus 658 ~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~-~i~~~~~~l~~ei~~k~~q~~~le~~-------i~~s~~~ 729 (1150)
+-||++|..|---|- -+|=||-+..+..-.+. +.+.++++++-||.+.+++-..|-++ |++.-+.
T Consensus 367 s~qfkqlEqqN~rLK-------dalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 367 SYQFKQLEQQNARLK-------DALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888877765554 24555555554444333 35567777777777766655444444 3333222
Q ss_pred CccccccchhhhHHHHHHHhhcccchhhhh
Q 001118 730 TPHTLSTTEMSQALSKLTTQLNEKTFELEI 759 (1150)
Q Consensus 730 s~~~~~~~e~~q~~~~l~~qlnek~felei 759 (1150)
++...--.++++||-+|-|+||=
T Consensus 440 -------VDAAlGAE~MV~qLtdknlnlEe 462 (1243)
T KOG0971|consen 440 -------VDAALGAEEMVEQLTDKNLNLEE 462 (1243)
T ss_pred -------HHHhhcHHHHHHHHHhhccCHHH
Confidence 33444456789999999999974
No 111
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.99 E-value=1.7e+02 Score=35.63 Aligned_cols=52 Identities=33% Similarity=0.467 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHhhhhhhhhhhhhhhHH
Q 001118 977 ELQKELSSRYQREADLEAALSEREQVEGELR-------KRIDEAKRHEEDLENELANMW 1028 (1150)
Q Consensus 977 ~~~~el~~~~~re~~~e~~l~ek~~~e~e~~-------~~~~e~k~~e~~len~lanmw 1028 (1150)
+++.=+.+..++...|...+.|+...+++|. ++++|-+..+..|.+++|..=
T Consensus 186 ~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 186 ELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444666667777777888777776654 456666667777777776654
No 112
>PRK08727 hypothetical protein; Validated
Probab=77.95 E-value=1.5 Score=48.20 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=26.9
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCC-eEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGIN-GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN-~tIfAYGQTGSGKTyTM~ 170 (1150)
.|+||.-+..... .+..+ .. +..|+. -.|+-||++|+||||.+.
T Consensus 15 ~~~f~~f~~~~~n---~~~~~-~~----~~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 15 DQRFDSYIAAPDG---LLAQL-QA----LAAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred cCChhhccCCcHH---HHHHH-HH----HHhccCCCeEEEECCCCCCHHHHHH
Confidence 5788886643332 22211 12 222332 359999999999999885
No 113
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.83 E-value=2e+02 Score=36.25 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhhHhhhhchHHHHHHHHh---cCCcchHHHHHHH-HhHHHHHHHHHHHHHHHHHhhhccccCccccccch
Q 001118 663 LLHEQMKMLAGEVALCTSSLKRLSEQAA---SNSEDSQLREHMQ-KLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTE 738 (1150)
Q Consensus 663 lLrEQ~KmL~gEva~~~s~Lkrl~e~A~---~~p~~~~i~~~~~-~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e 738 (1150)
-|.+++..++-|++-++....+|-|+-. +.|...+.-.+-+ .|.|++.--+.=|- .+..
T Consensus 225 ~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~-----------------~~~~ 287 (581)
T KOG0995|consen 225 RLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVS-----------------QMKS 287 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHH-----------------HHHh
Confidence 3667777799999999998888876532 2222222111111 12222222111111 1223
Q ss_pred hhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001118 739 MSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQI 792 (1150)
Q Consensus 739 ~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql 792 (1150)
-+|.+.+.+.+|+ +.+..|..||+-||..+..|+-|+
T Consensus 288 k~~~~~~~l~~l~-----------------~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 288 KKQHMEKKLEMLK-----------------SEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred hhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665 344569999999999999999996
No 114
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=77.47 E-value=2.1 Score=46.10 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=30.7
Q ss_pred ceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 117 SIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 117 s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
...|+||..++.. . ..++. .++.++.. .+.+..|+-||.+|+||||.+.
T Consensus 12 ~~~~~~d~f~~~~-~-~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 12 PPPPTFDNFVAGE-N-AELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CChhhhcccccCC-c-HHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 3458899988322 2 23332 23333331 2345679999999999999875
No 115
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.44 E-value=33 Score=44.19 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=23.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhccC
Q 001118 772 QMKISENTEMQETILLLRQQIDSLSNKMS 800 (1150)
Q Consensus 772 ~~k~~e~~elqe~v~~l~qql~~~~~~~~ 800 (1150)
-.+-+-+.++|-++..+++|.+..++..+
T Consensus 802 ~e~~~~l~~~q~e~~~~keq~~t~~~~ts 830 (970)
T KOG0946|consen 802 SEESTRLQELQSELTQLKEQIQTLLERTS 830 (970)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445578899999999999999888764
No 116
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=76.98 E-value=1.9 Score=48.41 Aligned_cols=124 Identities=17% Similarity=0.255 Sum_probs=72.6
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeE-EEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCCCceE
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGT-VFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREF 198 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~t-IfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~~~~f 198 (1150)
..+|...+-+...+.+.+.+ ..++.|..+- ++-||..|||||.++- .++.......
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVk--------------all~~y~~~G---- 80 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVK--------------ALLNEYADQG---- 80 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHH--------------HHHHHHhhcC----
Confidence 45677776666555565544 4677887543 6779999999988763 2232222111
Q ss_pred EEEEeeeeeecchhhcc------CCCCCCceEEEeCCCCcEEeCcEEEEe-CCHHHHHHHhhhcccccccccCCCCCCCC
Q 001118 199 LLRVSYLEIYNEVINDL------LDPTGQNLRIREDAQGTYVEGIKEEVV-LSPAHALSLIATGEEHRHVGSNNFNLLSS 271 (1150)
Q Consensus 199 ~V~VSylEIYNE~V~DL------L~p~~~~L~IrEd~~Gv~V~GLsev~V-~S~ee~l~lL~~G~~~R~~asT~~N~~SS 271 (1150)
+-.+||..+.+.|| |.......- +|+.+|+--.- .++..+..+|.-|...| ....-+.+.|.
T Consensus 81 ---LRlIev~k~~L~~l~~l~~~l~~~~~kFI-------lf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSN 149 (249)
T PF05673_consen 81 ---LRLIEVSKEDLGDLPELLDLLRDRPYKFI-------LFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSN 149 (249)
T ss_pred ---ceEEEECHHHhccHHHHHHHHhcCCCCEE-------EEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecc
Confidence 55678877766555 332222222 23344431111 24567777887776554 55556777788
Q ss_pred CceEEE
Q 001118 272 RSHTIF 277 (1150)
Q Consensus 272 RSHaIF 277 (1150)
|-|.|-
T Consensus 150 RRHLv~ 155 (249)
T PF05673_consen 150 RRHLVP 155 (249)
T ss_pred hhhccc
Confidence 888764
No 117
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.74 E-value=2.3e+02 Score=36.24 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhc-----CCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccc
Q 001118 659 DQMDLLHEQMKMLAGEVALCTSSLKRLSEQAAS-----NSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHT 733 (1150)
Q Consensus 659 d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~-----~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~ 733 (1150)
..++.+..+..-+..+++-++..++++-..-.. .-.++.+..+.+.|+.+|++.+.+....++++..-....-..
T Consensus 216 ~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~ 295 (650)
T TIGR03185 216 AELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPL 295 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 345555555555555555555555544332111 114667778888999999999999999999998766554221
Q ss_pred cccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHH
Q 001118 734 LSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQM 773 (1150)
Q Consensus 734 ~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~ 773 (1150)
.=.+..+..+.+|+-. |-.+-.+..+++.|+.
T Consensus 296 ---~l~~~ll~~~~~q~~~-----e~~~~~~~~~~~~l~~ 327 (650)
T TIGR03185 296 ---LLIPNLLDSTKAQLQK-----EEQSQQNQLTQEELEE 327 (650)
T ss_pred ---hhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 2233456666666653 2233467777777743
No 118
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=75.48 E-value=1.1 Score=42.17 Aligned_cols=16 Identities=38% Similarity=0.297 Sum_probs=14.4
Q ss_pred EEEeccCCCCCceeec
Q 001118 155 VFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~ 170 (1150)
++.+|+||+|||+++.
T Consensus 3 ~~i~~~~G~GKT~~~~ 18 (144)
T cd00046 3 VLLAAPTGSGKTLAAL 18 (144)
T ss_pred EEEECCCCCchhHHHH
Confidence 5789999999999986
No 119
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.45 E-value=3.1e+02 Score=37.14 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001118 974 LVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDE 1012 (1150)
Q Consensus 974 ~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e 1012 (1150)
.++++++|+.-=+.-=..+|..+-+-+-+..++...-.+
T Consensus 865 ~~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~ 903 (1074)
T KOG0250|consen 865 TVAEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKE 903 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 567888888754444466777666666555554444333
No 120
>PRK10436 hypothetical protein; Provisional
Probab=75.19 E-value=2.6 Score=51.22 Aligned_cols=28 Identities=36% Similarity=0.415 Sum_probs=23.4
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+..++..-++.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3455666778999999999999999986
No 121
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=74.69 E-value=3e+02 Score=36.63 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 001118 662 DLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMI 724 (1150)
Q Consensus 662 dlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~ 724 (1150)
..+++.+..+..+..-..+.+++|.+...+-.+..........+.+++....+++..++.++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 332 (908)
T COG0419 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLE 332 (908)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666667777766666555554443344555555555555555554443
No 122
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=74.51 E-value=1.7e+02 Score=36.83 Aligned_cols=104 Identities=21% Similarity=0.343 Sum_probs=71.3
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhc
Q 001118 681 SLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIK 760 (1150)
Q Consensus 681 ~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik 760 (1150)
++.++++++++.-- +.+.+|.+|.+|+++-+......++...+.=+. +.....=||+.-=|+..=
T Consensus 96 ~ar~~l~e~~~~ra--~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~-------------~~~~~~~l~~leAe~~~~ 160 (546)
T KOG0977|consen 96 TARKLLDETARERA--KLEIEITKLREELKELRKKLEKAEKERRGAREK-------------LDDYLSRLSELEAEINTL 160 (546)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH-------------HHHHhhhhhhhhhHHHHH
Confidence 45677777766544 445668899999998888888877755433222 111122233333334455
Q ss_pred cchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 001118 761 SADNRILQEQLQMKISENTEMQETILLLRQQIDSLSNKM 799 (1150)
Q Consensus 761 ~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~ 799 (1150)
-++.+.|-|.+.-=-.||.-|.+.|..++.||.+..-..
T Consensus 161 krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr 199 (546)
T KOG0977|consen 161 KRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999998866443
No 123
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=74.36 E-value=3.5 Score=41.17 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhh
Q 001118 861 NLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEE 900 (1150)
Q Consensus 861 ~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee 900 (1150)
.+..++..--.+++.||+.+.+|.|+|..|++.|++|-+-
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667899999999999999999999999999764
No 124
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=73.81 E-value=1.8 Score=51.65 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=35.1
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHH-Hhhc--C--CCeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVN-GAMQ--G--INGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~-~vL~--G--yN~tIfAYGQTGSGKTyTM 169 (1150)
.++|+.|.+.+..-+.+.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 367777777666666666666666553 2333 2 2456889999999999876
No 125
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=73.73 E-value=2.1 Score=50.65 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=30.0
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHH-hhcC----CCeEEEEeccCCCCCceee
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNG-AMQG----INGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~-vL~G----yN~tIfAYGQTGSGKTyTM 169 (1150)
+.||.|.+-+..-+.+.+.+..|+... .+.. ....|+-||++|+|||+..
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 455555554444455555555554432 2222 2346889999999999765
No 126
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.64 E-value=39 Score=39.29 Aligned_cols=117 Identities=21% Similarity=0.207 Sum_probs=64.8
Q ss_pred chhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhc--cccCccc
Q 001118 656 TITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGS--VERTPHT 733 (1150)
Q Consensus 656 ~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s--~~~s~~~ 733 (1150)
.-.|-+|.+++++|-++..-... + -.+...-|...+++|.+-+.+|+.|+..|... .....+.
T Consensus 52 ~fA~~ld~~~~kl~~Ms~~ql~~--~-------------~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~ 116 (301)
T PF06120_consen 52 EFADSLDELKEKLKEMSSTQLRA--N-------------IAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGI 116 (301)
T ss_pred HHHHhhHHHHHHHHhcCHHHHHH--H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34566677777776655221111 1 11233445555666666666666666555321 1111211
Q ss_pred cccchh---hhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001118 734 LSTTEM---SQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDS 794 (1150)
Q Consensus 734 ~~~~e~---~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 794 (1150)
.....+ .-.+.+.++.+-+.+.+|+ +.|++|++-..--.+.|.++..+.+|.-+
T Consensus 117 ~~~~~~~n~~~~~~~~t~~la~~t~~L~-------~~~~~l~q~~~k~~~~q~~l~~~~~~~~~ 173 (301)
T PF06120_consen 117 TENGYIINHLMSQADATRKLAEATRELA-------VAQERLEQMQSKASETQATLNDLTEQRID 173 (301)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222 2345678888888888886 46777777766677777777777777663
No 127
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=73.32 E-value=3 Score=48.59 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=29.2
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHH-hhc--CC--CeEEEEeccCCCCCceeec
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNG-AMQ--GI--NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~-vL~--Gy--N~tIfAYGQTGSGKTyTM~ 170 (1150)
+.||.+.+-+..-+.+.+.+..|+... .+. |. ...|+-||++|+|||+++-
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 455555554444444544444443332 121 21 3458999999999998763
No 128
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.28 E-value=3.1e+02 Score=36.14 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHHHH-------HHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhh---------
Q 001118 863 NSQVLMQAAEIENLKQER-------VKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLS--------- 926 (1150)
Q Consensus 863 ~~~~~~q~~eie~lk~~~-------~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~--------- 926 (1150)
.++.+.+..|+..+|+.. ....+..+-+...+--|+.|.+.+++=-|+.--++|-+.-+|.+|.
T Consensus 805 ~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~q 884 (970)
T KOG0946|consen 805 STRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQ 884 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHh
Confidence 334445555555555544 4445566777788888888888888865655544443333333332
Q ss_pred hhhhhhhhHHHHHHh
Q 001118 927 YENAKLNSELAAAKE 941 (1150)
Q Consensus 927 ~qN~kl~~el~~~~~ 941 (1150)
..|+-|++++...++
T Consensus 885 adse~l~ka~~~~k~ 899 (970)
T KOG0946|consen 885 ADSETLSKALKTVKS 899 (970)
T ss_pred hcchHHHHHHHHhhc
Confidence 225555555555443
No 129
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=73.09 E-value=4.5 Score=48.76 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
..+..+++|.|.. ...+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 3456678998865 4569999999765
No 130
>PF13514 AAA_27: AAA domain
Probab=72.44 E-value=3.5e+02 Score=36.86 Aligned_cols=34 Identities=32% Similarity=0.384 Sum_probs=22.7
Q ss_pred HHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhh
Q 001118 910 SAAVELRNLAEEVTRLSYENAKLNSELAAAKEAL 943 (1150)
Q Consensus 910 aaavElk~laeevtkl~~qN~kl~~el~~~~~~~ 943 (1150)
....+|..|..++..|..+...|..+++.++..-
T Consensus 893 ~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l 926 (1111)
T PF13514_consen 893 ELEAELEELEEELEELEEELEELQEERAELEQEL 926 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777776665443
No 131
>PRK06835 DNA replication protein DnaC; Validated
Probab=72.20 E-value=2.4 Score=49.36 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 140 AQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 140 v~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+...|+.+-.+. -.|+-||++|+||||.+.
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHHH
Confidence 455777776554 569999999999999876
No 132
>PRK06921 hypothetical protein; Provisional
Probab=71.88 E-value=2.5 Score=47.63 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHHHhhc---CCCeEEEEeccCCCCCceeec
Q 001118 139 AAQHVVNGAMQ---GINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 139 vv~plV~~vL~---GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+...++.+-. +....|+-||++|+||||.+.
T Consensus 101 ~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 101 CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 34455665532 234568899999999999986
No 133
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=71.71 E-value=3.3e+02 Score=35.87 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHH
Q 001118 869 QAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAA 939 (1150)
Q Consensus 869 q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~ 939 (1150)
+--++++|.-++.. ...+..+-.+.+-|..|.++.++-++.|-.|+--|-+-|-++ .|+|...|.-++
T Consensus 526 ~rek~~kl~~ql~k-~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~--E~EK~~ke~ki~ 593 (775)
T PF10174_consen 526 KREKHEKLEKQLEK-LRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREA--ENEKNDKEKKIG 593 (775)
T ss_pred hhhHHHHHHHHHHH-HHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHH
Confidence 34466666666655 344456677888888888888887777777777666655554 455555544433
No 134
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=71.70 E-value=1.3e+02 Score=38.64 Aligned_cols=136 Identities=22% Similarity=0.300 Sum_probs=87.4
Q ss_pred HHHHHHHhhhccchhhhhhhhhh-hhhhHHHHHhHHHHHHHh--hHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCC
Q 001118 877 KQERVKLVEERDGLEIHSQKLAE-EASYAKELASSAAVELRN--LAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSA 953 (1150)
Q Consensus 877 k~~~~~l~e~k~~l~~~nqkl~e-e~syaK~LAsaaavElk~--laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~ 953 (1150)
=|+..+|.|++-+--.+--+|.| ||.-|..++++.+-|.+- .-|=.-||-.||+++++||--++..-- ++-
T Consensus 117 lqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqree--mne---- 190 (916)
T KOG0249|consen 117 LQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREK--MNE---- 190 (916)
T ss_pred hhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh----
Confidence 35566666666665555555544 788888888888888874 344567999999999999998875541 110
Q ss_pred cccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHhhhhhhhhhhhhhhHHHH
Q 001118 954 PYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQV---EGELRKRIDEAKRHEEDLENELANMWVL 1030 (1150)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~---e~e~~~~~~e~k~~e~~len~lanmwvl 1030 (1150)
++.-+-.++.. -+.-.+.++|-+|||.+ +.+ ++-+++++++...-+..|-+|....--.
T Consensus 191 -------eh~~rlsdtvd-------ErlqlhlkermaAle~k----n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e 252 (916)
T KOG0249|consen 191 -------EHNKRLSDTVD-------ERLQLHLKERMAALEDK----NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE 252 (916)
T ss_pred -------hhccccccccH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 01111112222 33444566666666543 333 3446788888888888888887777778
Q ss_pred HHHHhh
Q 001118 1031 IAKMRN 1036 (1150)
Q Consensus 1031 vaklk~ 1036 (1150)
|+.|+.
T Consensus 253 ~~qL~~ 258 (916)
T KOG0249|consen 253 LDQLRR 258 (916)
T ss_pred HHHHHH
Confidence 888873
No 135
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=71.28 E-value=1.5 Score=40.94 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.8
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999985
No 136
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.10 E-value=4.7 Score=40.04 Aligned_cols=40 Identities=33% Similarity=0.437 Sum_probs=33.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhh
Q 001118 861 NLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEE 900 (1150)
Q Consensus 861 ~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee 900 (1150)
.+..++..--.+|+.||..+.+|.|+|..|.+.|++|-+-
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667899999999999999999999999998653
No 137
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.51 E-value=14 Score=43.04 Aligned_cols=123 Identities=25% Similarity=0.277 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchh
Q 001118 660 QMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEM 739 (1150)
Q Consensus 660 ~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~ 739 (1150)
.++.|..|+..+.-|..--..-|++|........+-.+++.+++.|+.|.++..+++..||+.- .++
T Consensus 10 l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~-------------~~l 76 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKER-------------EEL 76 (314)
T ss_dssp --------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH
Confidence 4667778888888999999999999986555566667788888999999888888888888743 233
Q ss_pred hhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001118 740 SQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSL 795 (1150)
Q Consensus 740 ~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~ 795 (1150)
.+-+..|..++.+..=+-+---.+...+|-+|.+...|...+...+....+||..+
T Consensus 77 ~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 77 DQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455544433222222233455566666666666666666777777776553
No 138
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.45 E-value=17 Score=39.94 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 410 EKSLIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKAALLGRIQRLT 485 (1150)
Q Consensus 410 ~~~li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~Lee~ee~~~~L~~~i~~L~ 485 (1150)
....+.++++|+..|+.+|..+..............-.+......+|+..+.+|+.+++..+.+...|..+.+.+.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999888876543211000000000011122233445555555556655555555555555554
No 139
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=70.42 E-value=1.3 Score=42.78 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=13.6
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
..+++.||.+|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 3678999999999998874
No 140
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=70.42 E-value=2 Score=43.11 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=19.3
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+..+..|.+ ++..|+||+|||+...
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHHH
Confidence 344556666 7889999999999865
No 141
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.15 E-value=3.1e+02 Score=34.98 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001118 767 LQEQLQMKISENTEMQETILLLRQQI 792 (1150)
Q Consensus 767 lqeql~~k~~e~~elqe~v~~l~qql 792 (1150)
+++.......|+.+||+.|..|+.++
T Consensus 319 ~~~~~~~~~~el~~l~~~l~~l~~~i 344 (594)
T PF05667_consen 319 EEDEQEEQEQELEELQEQLDELESQI 344 (594)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555566666666666666665
No 142
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=70.07 E-value=2.5 Score=50.69 Aligned_cols=50 Identities=30% Similarity=0.463 Sum_probs=30.3
Q ss_pred eeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 118 IAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 118 ~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+||.-.... ++.-.|... ..|...-.+.---||-||.+|+||||-|.
T Consensus 82 ~~ytFdnFv~g~-~N~~A~aa~--~~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 82 PKYTFDNFVVGP-SNRLAYAAA--KAVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCchhheeeCC-chHHHHHHH--HHHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 469999866433 333444321 22222222333458999999999999986
No 143
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=70.03 E-value=1.2e+02 Score=35.71 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=24.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhc
Q 001118 767 LQEQLQMKISENTEMQETILLLRQQIDSLSNK 798 (1150)
Q Consensus 767 lqeql~~k~~e~~elqe~v~~l~qql~~~~~~ 798 (1150)
+=+-.+.=++|-..++.++.+|-++|+.+|..
T Consensus 152 ~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g 183 (319)
T PF09789_consen 152 LLDEKEELVTERDAYKCKAHRLNHELNYILNG 183 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455555677777899999999999998854
No 144
>PF13245 AAA_19: Part of AAA domain
Probab=69.98 E-value=2.2 Score=39.33 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=18.1
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
|..++. -+..++..|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 344455 33445558999999999986
No 145
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.92 E-value=61 Score=40.58 Aligned_cols=74 Identities=30% Similarity=0.417 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhhhhhhhh----------------hhhHHHHHhH-------------HHHHHHhhHH
Q 001118 870 AAEIENLKQERVKLVEERDGLEIHSQKLAEE----------------ASYAKELASS-------------AAVELRNLAE 920 (1150)
Q Consensus 870 ~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee----------------~syaK~LAsa-------------aavElk~lae 920 (1150)
..||-+|--++.-.+|-=..||.+|.+|.-+ +-|=.||+.| +=+|++.|.+
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~ 120 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE 120 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4688889999999999999999999999654 2355555544 2356777777
Q ss_pred HHHHhhhhhhhhhhHHHHHHhhh
Q 001118 921 EVTRLSYENAKLNSELAAAKEAL 943 (1150)
Q Consensus 921 evtkl~~qN~kl~~el~~~~~~~ 943 (1150)
||..|....++..+++..++...
T Consensus 121 e~~elr~~~~~~~k~~~~~re~~ 143 (546)
T KOG0977|consen 121 ELKELRKKLEKAEKERRGAREKL 143 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Confidence 77777777777777776666554
No 146
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=69.82 E-value=1.6 Score=46.99 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=14.2
Q ss_pred EEEEeccCCCCCceeec
Q 001118 154 TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~ 170 (1150)
-+..+|.||||||+|+.
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34567999999999985
No 147
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=69.78 E-value=2.3 Score=51.90 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=23.5
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4555677778889999999999999996
No 148
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=69.43 E-value=23 Score=43.57 Aligned_cols=134 Identities=21% Similarity=0.291 Sum_probs=101.8
Q ss_pred chhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcccc-
Q 001118 656 TITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTL- 734 (1150)
Q Consensus 656 ~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~- 734 (1150)
++-..+|+|+|.-.+|++=|+...+.||+|.+-- ..-+..+.-+.+-|+.-|.+.+.++..=|++-.+++..-...+
T Consensus 334 e~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~--~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~ 411 (531)
T PF15450_consen 334 ETQSELDLLQEKSQILEDSVAELMRQLKDLDDHI--LALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEME 411 (531)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999851 1122334455788999999999999999999998887755432
Q ss_pred -ccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhhhc
Q 001118 735 -STTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKIS-ENTEMQETILLLRQQIDSLSNK 798 (1150)
Q Consensus 735 -~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~-e~~elqe~v~~l~qql~~~~~~ 798 (1150)
..-++...|..|+.|++ +| ++-+..+..+++.||+ |-....-.|..++|.|+..+..
T Consensus 412 ~~l~~v~eKVd~LpqqI~------~v-s~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLss 470 (531)
T PF15450_consen 412 KHLKEVQEKVDSLPQQIE------EV-SDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSS 470 (531)
T ss_pred HHHHHHHHHHHhhhHHHH------HH-HHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22367777777888777 33 4556678899999974 6677777888888888876644
No 149
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=69.29 E-value=3.7 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=18.0
Q ss_pred cCCCeEEEEeccCCCCCceeec
Q 001118 149 QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|-+.+||.||++|+|||.|+.
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3445678899999999999874
No 150
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=69.28 E-value=30 Score=42.84 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=16.9
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHh
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGA 147 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~v 147 (1150)
..++.|| --+-..||..+-+.|..+|
T Consensus 371 nEyevvY--iKpLAg~YktiKKqlenhv 396 (574)
T PF07462_consen 371 NEYEVVY--IKPLAGMYKTIKKQLENHV 396 (574)
T ss_pred CccceEE--ecchHHHHHHHHHHHHHHH
Confidence 3456666 3445678888877777665
No 151
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=69.20 E-value=4 Score=49.38 Aligned_cols=89 Identities=16% Similarity=0.205 Sum_probs=46.8
Q ss_pred eeeeecCCCCccc-ccCCCeEEEeeCCCeEEecCCC---C---------ceeEeeeeeeCCCCcchhHHHHHHHHHHHHh
Q 001118 81 MVTVRFRPLSPRE-VNKGDEIAWYADGDYTVRNEYN---P---------SIAYGFDKVFGPATTTRHVYDVAAQHVVNGA 147 (1150)
Q Consensus 81 rV~VRVRPl~~~E-~~~g~~v~~~~d~~~~v~~~~~---~---------s~~F~FD~VF~~~atQeeVYe~vv~plV~~v 147 (1150)
..+|++.+....+ +.+|..+.+......++..-.. + .-.-+|+.|.+-+..-+.+.+.+..|+...-
T Consensus 128 ~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~ 207 (438)
T PTZ00361 128 EYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPE 207 (438)
T ss_pred EEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHH
Confidence 5678888866544 5677777665543333321110 0 0012344454433334445554444544321
Q ss_pred -hc--CC--CeEEEEeccCCCCCceee
Q 001118 148 -MQ--GI--NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 148 -L~--Gy--N~tIfAYGQTGSGKTyTM 169 (1150)
+. |. ...|+-||++|+|||++.
T Consensus 208 ~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 208 LYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred HHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 11 21 234778999999999876
No 152
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=69.17 E-value=19 Score=39.00 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHH-hHHHHHHHhhHHHHHHhhhhhhhhhhHHH
Q 001118 873 IENLKQERVKLVEERDGLEIHSQKLAEEASYAKELA-SSAAVELRNLAEEVTRLSYENAKLNSELA 937 (1150)
Q Consensus 873 ie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LA-saaavElk~laeevtkl~~qN~kl~~el~ 937 (1150)
..+|..+..+|.+++..|+.+-+.|.....+++.-. -.-+.+-|..++||..|-.+|..|.++|.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666677777777777776666555554433 34577889999999999999999998875
No 153
>PF12846 AAA_10: AAA-like domain
Probab=68.37 E-value=1.9 Score=47.27 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.5
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5567889999999999885
No 154
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=68.12 E-value=3.8 Score=44.87 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=19.2
Q ss_pred HHhhcCCCeEEEEeccCCCCCceeec
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
...+....+.++-+|++|+|||+.+.
T Consensus 36 ~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 36 EYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 33344446678889999999998764
No 155
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=67.65 E-value=2.7 Score=48.90 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=20.3
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+..++.--.+.|+-.|+||||||+||.
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 334443335789999999999999985
No 156
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=67.50 E-value=4.1 Score=45.68 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=30.9
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+|.|..+-.....+..+|... ..++..+-+| ..++-||++|+||||-..
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~--~nl~l~G~~G~GKThLa~ 123 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDL-ASLVEFFERG--ENLVLLGPPGVGKTHLAI 123 (254)
T ss_pred CcccccccCCcchhHHHHHHH-HHHHHHhccC--CcEEEECCCCCcHHHHHH
Confidence 444444434445666777544 3555555544 346779999999999876
No 157
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.37 E-value=2.4e+02 Score=38.40 Aligned_cols=211 Identities=20% Similarity=0.215 Sum_probs=107.6
Q ss_pred hhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCccccccccccccHH
Q 001118 897 LAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVE 976 (1150)
Q Consensus 897 l~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1150)
.-.+-+-+.-.-+-+-.+.-.+-.|+.+|..+=.++..+|.-.+....+..-| .+.- ..+...-+.
T Consensus 424 ~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~----~~~e--------~~~~ekel~-- 489 (1293)
T KOG0996|consen 424 ARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEG----IREE--------IEKLEKELM-- 489 (1293)
T ss_pred HHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hHHH--------HHHHHHHHH--
Confidence 33333334444445556666666777777666666555555555444221111 1111 000111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCCccccccccccCc
Q 001118 977 ELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLENELANMWVLIAKMRNSGINGEDMSSRGVHALKIPR 1056 (1150)
Q Consensus 977 ~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmwvlvaklk~~~~~~~~~~~~~~~~~~~~~ 1056 (1150)
.+...++..+.+-...|.-|.---.+++.+.++++++|.+=....++++---..|-.+|+.= ++...+-.
T Consensus 490 ~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l---~~~k~e~~------- 559 (1293)
T KOG0996|consen 490 PLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEEL---PSLKQELK------- 559 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHH-------
Confidence 22233333334444555555555667888889999999888887777776666666665421 00000000
Q ss_pred ccccCCCCCCCCccCccccccccc-ccccCCchHHHhHhhHHHhhhhhhhhHHHHhhhcccc-ccCC-----chhhHHhh
Q 001118 1057 TGIKNGFMPSNPRSLKLSEEDDVC-ENVDGVSSFEELSASYQTERRKCKELESLISRLKGED-ISGL-----DVAALEEL 1129 (1150)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~~-----~~~~~~~~ 1129 (1150)
.+- -+....+ ..+-... .-.....-++|++.+-+..|.+++=|..|+ |||-.. |.|. |+.++.+
T Consensus 560 ----~~~--k~l~~~~-~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~-r~kesG~i~Gf~GRLGDLg~Id~- 630 (1293)
T KOG0996|consen 560 ----EKE--KELPKLR-KEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALM-RLKESGRIPGFYGRLGDLGAIDE- 630 (1293)
T ss_pred ----HHH--HhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHcCCCCccccccccccccch-
Confidence 000 0000000 0000000 011225668899999999999999998765 666555 6665 6666433
Q ss_pred hcchHHHHHHHHH
Q 001118 1130 QNFHVEAITKICH 1142 (1150)
Q Consensus 1130 ~~~~~~~~~~~~~ 1142 (1150)
-|-| |||-.|+
T Consensus 631 -kYDv-AIsTac~ 641 (1293)
T KOG0996|consen 631 -KYDV-AISTACA 641 (1293)
T ss_pred -HHHH-HHHHhcc
Confidence 3455 6666443
No 158
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=67.32 E-value=99 Score=34.15 Aligned_cols=130 Identities=21% Similarity=0.223 Sum_probs=79.3
Q ss_pred CchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHH-------HHHHHHH--------HHH
Q 001118 655 TTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEI-------SEKKLQI--------RVL 719 (1150)
Q Consensus 655 ~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei-------~~k~~q~--------~~l 719 (1150)
+.-..+|+-|+.|+---..+.+.-..=|+.|-+.+.. -.+...+|+.|+.|+ .++-++| +.|
T Consensus 43 s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~---k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~L 119 (206)
T PF14988_consen 43 SRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRL---KEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARL 119 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888988888888888888888888877665 222334455554444 3443333 234
Q ss_pred HHHhhhccccCccccccch-----------hhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHH
Q 001118 720 EQRMIGSVERTPHTLSTTE-----------MSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLL 788 (1150)
Q Consensus 720 e~~i~~s~~~s~~~~~~~e-----------~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l 788 (1150)
|+.+.+.-...-+....-+ .-+.+.+.+..++ ++|+-|++.|.+-+-|+..|+.+...|
T Consensus 120 Eke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~----------~EN~~L~k~L~~l~~e~~~L~~~~~~L 189 (206)
T PF14988_consen 120 EKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIK----------RENQQLRKELLQLIQEAQKLEARKSQL 189 (206)
T ss_pred HHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433222111111111122 1122222222222 689999999999999999999999999
Q ss_pred HHHHHHhhh
Q 001118 789 RQQIDSLSN 797 (1150)
Q Consensus 789 ~qql~~~~~ 797 (1150)
+.|-..+..
T Consensus 190 e~qk~~L~~ 198 (206)
T PF14988_consen 190 EKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHH
Confidence 988766543
No 159
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=67.14 E-value=2.1 Score=45.76 Aligned_cols=19 Identities=42% Similarity=0.608 Sum_probs=16.6
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
.+.|+-.|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999985
No 160
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=66.70 E-value=3 Score=49.37 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.3
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678889999999999985
No 161
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=66.51 E-value=45 Score=38.12 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=40.4
Q ss_pred hhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccc
Q 001118 899 EEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFC 949 (1150)
Q Consensus 899 ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~ 949 (1150)
.-..|-..+++...-+++.+..++++|-.++..+.+++..+..-..+-.+|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g 171 (301)
T PF14362_consen 121 KQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFG 171 (301)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344555566668888999999999999999999999999988776555555
No 162
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=66.22 E-value=3.1 Score=44.57 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=20.5
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|..++...+..++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3455565555556668999999999884
No 163
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=65.99 E-value=2.1 Score=47.45 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=16.1
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
.+.|+..|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 5667778999999999984
No 164
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=65.81 E-value=4.5 Score=46.92 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhcC-CCeEEEEeccCCCCCceeec
Q 001118 135 VYDVAAQHVVNGAMQG-INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 135 VYe~vv~plV~~vL~G-yN~tIfAYGQTGSGKTyTM~ 170 (1150)
+++..+..++...+.+ .---.+-||+.|+|||.|..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 3334434444455544 44457789999999999974
No 165
>PRK09183 transposase/IS protein; Provisional
Probab=65.44 E-value=3.1 Score=46.67 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=26.1
Q ss_pred eeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 122 FDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 122 FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
||.-|.+..+...|..-..-.. +-.|.| |+-||++|+||||.+.
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHH
Confidence 5555666665544433211111 224544 6679999999999875
No 166
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=65.25 E-value=4.1 Score=43.16 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=15.4
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
.-.|+-||++|+||||...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ 65 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAV 65 (178)
T ss_dssp --EEEEEESTTSSHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHH
Confidence 3458999999999999876
No 167
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=65.20 E-value=5.6 Score=50.43 Aligned_cols=88 Identities=25% Similarity=0.371 Sum_probs=54.4
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeecCC---CCCCCchh----hHHHHHHHhhhc
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGE---QKSPGIIP----LAVKDVFGIIQE 192 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~---~~~~GIIP----Ral~dLF~~I~~ 192 (1150)
|....=|.|.-.|..-|.. +++.+-.|...- ..+|.|||||||||..- ...|-||- ..+..|++.+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4444557888889887764 445555664232 37899999999998642 11222221 233445554433
Q ss_pred C-CCceEEEEEeeeeeecchh
Q 001118 193 T-PGREFLLRVSYLEIYNEVI 212 (1150)
Q Consensus 193 ~-~~~~f~V~VSylEIYNE~V 212 (1150)
. ++......|||+..|.-..
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hCCCCeEEEEeeecccCCccc
Confidence 2 4555778899999997543
No 168
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=64.84 E-value=3.3 Score=48.71 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=17.9
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.+.|+..|+||||||.||.
T Consensus 133 ~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46899999999999999985
No 169
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.71 E-value=73 Score=32.45 Aligned_cols=64 Identities=34% Similarity=0.407 Sum_probs=50.2
Q ss_pred HhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHH
Q 001118 916 RNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAA 995 (1150)
Q Consensus 916 k~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~ 995 (1150)
+.|++||.+||..|+.+.+... .++.|+.++..-.+|..++=.+
T Consensus 47 ~~l~~Eiv~l~~~~e~~~~~~~------------------------------------~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 47 DELREEIVKLMEENEELRALKK------------------------------------EVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999998844332 1347788888888888777778
Q ss_pred HHHHHhHHHHHHHHHHHhhh
Q 001118 996 LSEREQVEGELRKRIDEAKR 1015 (1150)
Q Consensus 996 l~ek~~~e~e~~~~~~e~k~ 1015 (1150)
|-||.-.-.||+-.|.+-|.
T Consensus 91 lGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 91 LGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred hcchHHHHHHHHHHHHHHHH
Confidence 99999999999988887663
No 170
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=64.11 E-value=1.1e+02 Score=40.81 Aligned_cols=196 Identities=20% Similarity=0.235 Sum_probs=111.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhccCCCCccccccCCCCCCCCchhhhhhhhccccCCCCCccccccCCCCccccc
Q 001118 771 LQMKISENTEMQETILLLRQQIDSLSNKMSGSPEQMAENDGIPLKPCSEEISQQKNAWRNGLGSCEETFVDEHTPTSVMS 850 (1150)
Q Consensus 771 l~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (1150)
.=+|-.=..++=++|..||+.|..+=+++. +-+.++.+.+.
T Consensus 399 kl~K~~llKd~~~EIerLK~dl~AaReKnG-------------------------------vyisee~y~~~-------- 439 (1041)
T KOG0243|consen 399 KLMKKTLLKDLYEEIERLKRDLAAAREKNG-------------------------------VYISEERYTQE-------- 439 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhCc-------------------------------eEechHHHHHH--------
Confidence 335667788999999999999988877642 22222211110
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhh
Q 001118 851 LNRIFSHEESNLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENA 930 (1150)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~ 930 (1150)
..+......+++.++.|++++...+..++|---.....++.|-++----|.==---..||..+.+|..++-++ =
T Consensus 440 -----e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~-l 513 (1041)
T KOG0243|consen 440 -----EKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT-L 513 (1041)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 0112223346677888999999999998888876666677777765555544455678888888888887655 2
Q ss_pred hhhhHHHHHHhhhcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001118 931 KLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGELRKRI 1010 (1150)
Q Consensus 931 kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~ 1010 (1150)
++.-++....... .....+++ ..|++.+......-..|=.-|-.++..+..=+..+
T Consensus 514 ~~~e~ii~~~~~s-------------------e~~l~~~a-----~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~ 569 (1041)
T KOG0243|consen 514 KEEEEIISQQEKS-------------------EEKLVDRA-----TKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVI 569 (1041)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHH
Confidence 2333333322221 11122222 24555555555555555555555555554444444
Q ss_pred HHhhhhhhhhhhhhhhHHHHHHHHhhcC
Q 001118 1011 DEAKRHEEDLENELANMWVLIAKMRNSG 1038 (1150)
Q Consensus 1011 ~e~k~~e~~len~lanmwvlvaklk~~~ 1038 (1150)
..-... |=-=+-+||-+||-..+.+
T Consensus 570 ~~~~~~---l~~~~~~~~~~v~~~~s~~ 594 (1041)
T KOG0243|consen 570 DDFQSQ---LSENLSTLHGLVASSSSQQ 594 (1041)
T ss_pred HHHhhh---hhHHHHHHHHHHhhhhhhH
Confidence 332221 1112456676666554433
No 171
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.92 E-value=11 Score=36.46 Aligned_cols=58 Identities=26% Similarity=0.405 Sum_probs=48.2
Q ss_pred chHHHhHhhHHHhhhhhhhhHHHHhhhccccccCCchhhHHhhhcchHHHHHHHHHHh
Q 001118 1087 SSFEELSASYQTERRKCKELESLISRLKGEDISGLDVAALEELQNFHVEAITKICHAK 1144 (1150)
Q Consensus 1087 ~~~~e~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1144 (1150)
...+.+..-+..-|..+..|+..+.++.|+|+.+|++..|..|...---|+.+|=..|
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK 69 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRK 69 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHH
Confidence 4455666667777999999999999999999999999999999887777888775544
No 172
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=63.80 E-value=3.5 Score=43.17 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=21.5
Q ss_pred HHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 141 QHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 141 ~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..+...+-.|.+.+++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 344444446678899999999999998764
No 173
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.58 E-value=43 Score=36.96 Aligned_cols=76 Identities=8% Similarity=0.127 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhh
Q 001118 865 QVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEAL 943 (1150)
Q Consensus 865 ~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~ 943 (1150)
++...+.|+++|+.+..++... +..+...|.++..=++...+..-=|.+.|.+|++++..+|..|.+++...+...
T Consensus 94 rlp~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566777777666665544 334444444444445555555666777788888888888888888888777654
No 174
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.44 E-value=3.5e+02 Score=32.98 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccc
Q 001118 658 TDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTT 737 (1150)
Q Consensus 658 ~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~ 737 (1150)
.+.++-+.|.++-+-.+...-.-.+++|=+ +++.+.+.+..-..+-+-....||-++-+.++--++. ..
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~---------~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~E--i~ 279 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKE---------QYQREYQFILEALQEERYRYERLEEQLNDLTELHQNE--IY 279 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 334444444444444333333344444432 3455666666667777777777888887777764432 23
Q ss_pred hhhhHH----HHHHHhhcccchhh
Q 001118 738 EMSQAL----SKLTTQLNEKTFEL 757 (1150)
Q Consensus 738 e~~q~~----~~l~~qlnek~fel 757 (1150)
.+-|.+ .|+-=|.+|++=++
T Consensus 280 ~LKqeLa~~EEK~~Yqs~eRaRdi 303 (395)
T PF10267_consen 280 NLKQELASMEEKMAYQSYERARDI 303 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhHH
Confidence 444444 33444667665444
No 175
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=62.98 E-value=1.8e+02 Score=33.20 Aligned_cols=127 Identities=28% Similarity=0.413 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHH--------HHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhh
Q 001118 871 AEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKE--------LASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEA 942 (1150)
Q Consensus 871 ~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~--------LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~ 942 (1150)
.++..|--+...-+|.=..||.+|++|..+-.-.++ +....-.||+.|-..|-.+..+|++|..++..++.-
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e 83 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE 83 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence 456677777777888888888888888776553332 455567789999999999999999998888876543
Q ss_pred hcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh
Q 001118 943 LSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLEN 1022 (1150)
Q Consensus 943 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len 1022 (1150)
. +++|..+......-..+|.-+ ..|++.++++...-.+||+
T Consensus 84 ~--------------------------------~~~r~k~e~e~~~~~~le~el-------~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 84 L--------------------------------EDLRRKYEEELAERKDLEEEL-------ESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp H--------------------------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred H--------------------------------HHHHHHHHHHHHHHHHHHHHH-------hhhhhhhhhhhhhHhHHHH
Confidence 2 233333332222222222221 3457888888888899999
Q ss_pred hhhhHHHHHHHHhh
Q 001118 1023 ELANMWVLIAKMRN 1036 (1150)
Q Consensus 1023 ~lanmwvlvaklk~ 1036 (1150)
.+..++-=++-||+
T Consensus 125 ~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 125 QIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999887776664
No 176
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.55 E-value=2.7e+02 Score=37.43 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh
Q 001118 776 SENTEMQETILLLRQQIDSLSN 797 (1150)
Q Consensus 776 ~e~~elqe~v~~l~qql~~~~~ 797 (1150)
-||++|+-++..+++||.+...
T Consensus 822 lE~e~l~~e~~~~k~~l~~~~~ 843 (1174)
T KOG0933|consen 822 LEHEELEKEISSLKQQLEQLEK 843 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888876543
No 177
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=62.37 E-value=5 Score=47.09 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=28.1
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 129 ATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 129 ~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..|..+|+.+...+.. .....+|..|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 35689999887654433 44467789999999999987
No 178
>PF14282 FlxA: FlxA-like protein
Probab=62.08 E-value=40 Score=33.27 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=48.2
Q ss_pred CCchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q 001118 654 GTTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSV 727 (1150)
Q Consensus 654 ~~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~ 727 (1150)
+.....+|..|.+|++.|..++.--... .+...+.-+.+++.|..+|.....||+.|..+....-
T Consensus 14 ~~~~~~~I~~L~~Qi~~Lq~ql~~l~~~---------~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 14 SGSSDSQIEQLQKQIKQLQEQLQELSQD---------SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHcc---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444789999999999998765432221 3334555578899999999999999999988876654
No 179
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=62.01 E-value=4.1 Score=45.87 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=21.1
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+..++..-.+.|+-.|.||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 445555556778889999999999985
No 180
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=61.98 E-value=1.7e+02 Score=32.61 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhccchhhhhhhhhh-hhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHh
Q 001118 873 IENLKQERVKLVEERDGLEIHSQKLAE-EASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKE 941 (1150)
Q Consensus 873 ie~lk~~~~~l~e~k~~l~~~nqkl~e-e~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~ 941 (1150)
+-+++.+..++.++++.|..+-..+.+ ...+...-......|+..+...+.+|....+++..++...|.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666677777666666555 222222223333444445555555555555555555554443
No 181
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=61.97 E-value=61 Score=38.91 Aligned_cols=118 Identities=21% Similarity=0.309 Sum_probs=68.1
Q ss_pred cchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHhHc
Q 001118 316 TGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRS 395 (1150)
Q Consensus 316 ~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLrFA~RA 395 (1150)
.|...+++.. .-|..+-.++..-+.++ ++.+|+---=+-|.+.|+.++ .++||.+..
T Consensus 184 ~GV~vr~~~~--e~l~~F~~l~~~T~~R~--~f~~r~~~Yf~~l~~~f~d~a-~~~~A~l~~------------------ 240 (406)
T PF02388_consen 184 KGVEVREGSR--EELDDFYDLYKETAERK--GFSIRSLEYFENLYDAFGDKA-KFFLAELNG------------------ 240 (406)
T ss_dssp TTEEEEEE-C--HHHHHHHHHHHHHHHHT--T-----HHHHHHHHHHCCCCE-EEEEEEECC------------------
T ss_pred CceEEEEcCH--HHHHHHHHHHHHHHhhC--CCcccCHHHHHHHHHhcCCCe-EEEEEEEcH------------------
Confidence 3444455522 45778888888777654 677787766666777776664 478888754
Q ss_pred cccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 396 KHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKA 475 (1150)
Q Consensus 396 K~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~Lee~ee~~~ 475 (1150)
+..+..++.++..|..++..+... +++.. +.++++.+.+++.+
T Consensus 241 ---------------~~~~~~l~~~~~~~~~~i~~l~~~---------------------l~~~~-k~~~k~~~~~~q~~ 283 (406)
T PF02388_consen 241 ---------------KEYLESLQEKLEKLEKEIEKLEEK---------------------LEKNP-KKKNKLKELEEQLA 283 (406)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHH-T-HHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhCc-chhhHHHHHHHHHH
Confidence 233445555566665555554322 11111 34456667777778
Q ss_pred HHHHHHHHHHHHHHhccc
Q 001118 476 ALLGRIQRLTKLILVSTK 493 (1150)
Q Consensus 476 ~L~~~i~~L~k~il~s~~ 493 (1150)
.+.++|..+..++-....
T Consensus 284 ~~~k~~~~~~~~~~~~~~ 301 (406)
T PF02388_consen 284 SLEKRIEEAEELIAEYGD 301 (406)
T ss_dssp HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 888888888887765433
No 182
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=61.80 E-value=76 Score=40.46 Aligned_cols=62 Identities=29% Similarity=0.314 Sum_probs=48.1
Q ss_pred HhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHH
Q 001118 916 RNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAA 995 (1150)
Q Consensus 916 k~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~ 995 (1150)
--|++|+-||.+||++|..+.. .++-|+.+|..-.||-+++=.+
T Consensus 883 s~laeElvklT~e~e~l~ek~~------------------------------------~~p~~~~~ledL~qRy~a~Lqm 926 (961)
T KOG4673|consen 883 SSLAEELVKLTAECEKLREKAD------------------------------------RVPGIKAELEDLRQRYAAALQM 926 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999943321 1345788999999999888888
Q ss_pred HHHHHhHHHHHHHHHHHh
Q 001118 996 LSEREQVEGELRKRIDEA 1013 (1150)
Q Consensus 996 l~ek~~~e~e~~~~~~e~ 1013 (1150)
..||+..-+||+--|.+-
T Consensus 927 yGEk~Ee~EELrlDl~dl 944 (961)
T KOG4673|consen 927 YGEKDEELEELRLDLVDL 944 (961)
T ss_pred hcchHHHHHHHHhhHHHH
Confidence 899988888887666543
No 183
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.63 E-value=31 Score=36.25 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=50.3
Q ss_pred chhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001118 656 TITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQ 721 (1150)
Q Consensus 656 ~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~ 721 (1150)
.+-.+|..|++|+.-|..++..-.+-|+.| ...|.++++..+|..|+.||......+..|..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L----~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASL----SSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334478899999999988887777776666 47899999999999999998888888887775
No 184
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.01 E-value=6e+02 Score=34.95 Aligned_cols=53 Identities=28% Similarity=0.223 Sum_probs=30.8
Q ss_pred cccccHHHHHHHHHHHHHHH--HHHHHHHHHH----HhHHHHHHHHHHHhhhhhhhhhh
Q 001118 970 EDGLLVEELQKELSSRYQRE--ADLEAALSER----EQVEGELRKRIDEAKRHEEDLEN 1022 (1150)
Q Consensus 970 ~~~~~~~~~~~el~~~~~re--~~~e~~l~ek----~~~e~e~~~~~~e~k~~e~~len 1022 (1150)
.+...+|++..|+.....=| +.||+-+-+. --.=+||.+++++..+|-..|++
T Consensus 1059 ~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~ 1117 (1293)
T KOG0996|consen 1059 LDVESPEELEAEMLEDNINEKIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELEK 1117 (1293)
T ss_pred cccCChHHHHhhhcHhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556777777775544444 6666665555 11235666666666666666654
No 185
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=60.42 E-value=6 Score=44.75 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=26.0
Q ss_pred eeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 121 GFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 121 ~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+||.+++ |.++.+. +...+-.|....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHH
Confidence 4677764 4444432 2222223443458889999999999874
No 186
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=60.29 E-value=84 Score=40.64 Aligned_cols=99 Identities=24% Similarity=0.435 Sum_probs=69.8
Q ss_pred CcchHHHHHHHHhHHHHHHH-------------------------------HHHHHHHHHHhhhccccCccccccchhhh
Q 001118 693 SEDSQLREHMQKLKDEISEK-------------------------------KLQIRVLEQRMIGSVERTPHTLSTTEMSQ 741 (1150)
Q Consensus 693 p~~~~i~~~~~~l~~ei~~k-------------------------------~~q~~~le~~i~~s~~~s~~~~~~~e~~q 741 (1150)
+-|..++..|.+++.||..+ ++.|..|+++|...++...+ .+++-.
T Consensus 597 ~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~---ss~LK~ 673 (762)
T PLN03229 597 ELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIR---SSDLKS 673 (762)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhc---chhHHH
Confidence 55666788999999988822 78899999999888887553 345555
Q ss_pred HHHHHHHhhcccchhhhhccch----hhH--HHHHHHHhhhhh---HHHHHHHHHHHHHHHHhhhcc
Q 001118 742 ALSKLTTQLNEKTFELEIKSAD----NRI--LQEQLQMKISEN---TEMQETILLLRQQIDSLSNKM 799 (1150)
Q Consensus 742 ~~~~l~~qlnek~feleik~ad----nri--lqeql~~k~~e~---~elqe~v~~l~qql~~~~~~~ 799 (1150)
.|..|.--+. |+ =|+.| |+| |+.|..||+++- .+|+|+-..|+..|..+.+..
T Consensus 674 k~E~Lk~Eva-ka----~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~~~~~~~~ 735 (762)
T PLN03229 674 KIELLKLEVA-KA----SKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAAARETA 735 (762)
T ss_pred HHHHHHHHHH-hc----CCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHhhccc
Confidence 5544443331 11 01111 555 999999999986 589999999999998877654
No 187
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=60.13 E-value=5.8 Score=48.04 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=31.5
Q ss_pred eeEeeeeeeCCCCcchhHHHHHHHHHHHHh--hcC--CCeEEEEeccCCCCCceeec
Q 001118 118 IAYGFDKVFGPATTTRHVYDVAAQHVVNGA--MQG--INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 118 ~~F~FD~VF~~~atQeeVYe~vv~plV~~v--L~G--yN~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+||.-+.. ..+...|. .+..+.... ..| ||. +|-||++|+||||.+.
T Consensus 106 ~~~tFdnFv~g-~~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 106 PLMTFANFLVT-PENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred ccccccceeeC-CcHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 35899987753 34444443 344444322 223 454 6789999999999885
No 188
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.84 E-value=58 Score=33.18 Aligned_cols=105 Identities=22% Similarity=0.305 Sum_probs=66.3
Q ss_pred CCCchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcc
Q 001118 653 SGTTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPH 732 (1150)
Q Consensus 653 ~~~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~ 732 (1150)
.+...+-.|.-|.-+++.++||++..+.-|.+|..+ ++--...| +.+-..+++.+....++..|++++.+
T Consensus 10 ~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~--r~~l~~Ei-v~l~~~~e~~~~~~~~~~~L~~el~~------- 79 (120)
T PF12325_consen 10 SGGPSVQLVERLQSQLRRLEGELASLQEELARLEAE--RDELREEI-VKLMEENEELRALKKEVEELEQELEE------- 79 (120)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 345566788999999999999999999999888643 22222222 11234455556666666666665533
Q ss_pred ccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001118 733 TLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDS 794 (1150)
Q Consensus 733 ~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 794 (1150)
+.+-|.-+..= |-+|.-+++||+--|..||.-.-.
T Consensus 80 ------l~~ry~t~Lel---------------------lGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 80 ------LQQRYQTLLEL---------------------LGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred ------HHHHHHHHHHH---------------------hcchHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222 456778888999999988865433
No 189
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.81 E-value=6.1 Score=45.18 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 140 AQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 140 v~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..+++..+.--.-+.|+..|.|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 3566777776777889999999999999984
No 190
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=59.79 E-value=3.9 Score=46.88 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=20.8
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++..++.+ .+.|+-.|.||||||++|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 445555554 4567889999999999874
No 191
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=59.66 E-value=4.2 Score=42.55 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=16.4
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
|..++..-. ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 344443322 46678999999998875
No 192
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=59.51 E-value=1.4e+02 Score=33.19 Aligned_cols=44 Identities=27% Similarity=0.213 Sum_probs=27.2
Q ss_pred HHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHH
Q 001118 745 KLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLL 788 (1150)
Q Consensus 745 ~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l 788 (1150)
-|.+||+|-.=+|+.+.....-|++.++.|..|++..+.++...
T Consensus 35 ~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~ 78 (202)
T PF06818_consen 35 SLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRK 78 (202)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHH
Confidence 35666666666666666666666666766666666555554443
No 193
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=59.45 E-value=3.1 Score=39.89 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=13.2
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999875
No 194
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=59.41 E-value=71 Score=38.94 Aligned_cols=127 Identities=18% Similarity=0.283 Sum_probs=16.1
Q ss_pred CchhHHHHHHHHHHHHhhhhHhhhhchH-HHHHHH---Hhc-------CCc-chHH------HHHHHHhHHHHHHHHHHH
Q 001118 655 TTITDQMDLLHEQMKMLAGEVALCTSSL-KRLSEQ---AAS-------NSE-DSQL------REHMQKLKDEISEKKLQI 716 (1150)
Q Consensus 655 ~~~~d~idlLrEQ~KmL~gEva~~~s~L-krl~e~---A~~-------~p~-~~~i------~~~~~~l~~ei~~k~~q~ 716 (1150)
...-+.|.-|.++++-|..++.-++.++ .+|.+. ++. .|. .... ..-...-..||+..++++
T Consensus 81 ~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ev~~LRreL 160 (424)
T PF03915_consen 81 KHIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSKSDLKEVQSLRREL 160 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCcchHHHHHHHHHHH
Confidence 3455677778888888888888888887 777766 111 111 0000 000001245666667777
Q ss_pred HHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhh-hhccc--hhhHHHHHHHHh--------hhhhHHHHHHH
Q 001118 717 RVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFEL-EIKSA--DNRILQEQLQMK--------ISENTEMQETI 785 (1150)
Q Consensus 717 ~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~fel-eik~a--dnrilqeql~~k--------~~e~~elqe~v 785 (1150)
++|=| + +.....++..+|..+.+|.+ .|.- -++.+ -||..=+.=+.| .....+||..|
T Consensus 161 avLRQ-l--------~~~~~~~~~~~i~~i~~ki~--~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~V 229 (424)
T PF03915_consen 161 AVLRQ-L--------YSEFQSEVKESISSIREKIK--KVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLV 229 (424)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-H--------HHHHHHHHHHHHHHHHHHHH--HHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77655 2 22223445555666666654 1111 11222 456544443333 34456677777
Q ss_pred HHHHHHH
Q 001118 786 LLLRQQI 792 (1150)
Q Consensus 786 ~~l~qql 792 (1150)
..|+.-.
T Consensus 230 E~LRkDV 236 (424)
T PF03915_consen 230 EDLRKDV 236 (424)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 195
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=59.03 E-value=8.1 Score=43.89 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccCCCCCceee------cCCCC
Q 001118 137 DVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM------HGEQK 174 (1150)
Q Consensus 137 e~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM------~G~~~ 174 (1150)
-..+.|++ ..+.--+..|-.||+|++|||.++ +|++.
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~ 221 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQLAASVWGNPD 221 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHHHhhhhCcCch
Confidence 44456666 455666778889999999999886 46665
No 196
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=58.70 E-value=7.8 Score=46.32 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=40.0
Q ss_pred eeEeeeeeeCCCCcchhHHHHHHHHHHHHhhc----CCCeEEEEeccCCCCCcee
Q 001118 118 IAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQ----GINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 118 ~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~----GyN~tIfAYGQTGSGKTyT 168 (1150)
.++.||.+.+.-.--..+++.++-.++..++. -.--.|.-||+.|+|||+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 45788888887777778888888888888774 2334577899999999976
No 197
>PF13479 AAA_24: AAA domain
Probab=58.42 E-value=4.3 Score=43.97 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=16.9
Q ss_pred CeEEEEeccCCCCCceeecC
Q 001118 152 NGTVFAYGVTSSGKTHTMHG 171 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~G 171 (1150)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45789999999999998754
No 198
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=57.98 E-value=4.7 Score=46.78 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++..++.+. ..|+..|.||||||++|.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4555566553 566677999999997764
No 199
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=57.94 E-value=1.4e+02 Score=32.76 Aligned_cols=107 Identities=21% Similarity=0.290 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHh--cCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccc
Q 001118 658 TDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAA--SNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLS 735 (1150)
Q Consensus 658 ~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~--~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~ 735 (1150)
-+++.-+.-.++-..+|+--....|++|-..+. +=|+-+.++.+...++.++.++...|..||+++--.
T Consensus 81 q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~--------- 151 (194)
T PF15619_consen 81 QEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELE--------- 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 345555666777777888888888888888776 557788899999999999999999999999965211
Q ss_pred cchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001118 736 TTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDS 794 (1150)
Q Consensus 736 ~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 794 (1150)
..++..-..+-+.|..++ ..+|..|+++|..|.++|..
T Consensus 152 ----~k~~~rql~~e~kK~~~~-----------------~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 152 ----NKSFRRQLASEKKKHKEA-----------------QEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred ----hhHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 112222222333333332 35788889999999988753
No 200
>PRK11281 hypothetical protein; Provisional
Probab=57.65 E-value=1.8e+02 Score=39.73 Aligned_cols=117 Identities=21% Similarity=0.291 Sum_probs=59.0
Q ss_pred CCCCchhHHHHHHHHHHHHhhhhH----hhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q 001118 652 PSGTTITDQMDLLHEQMKMLAGEV----ALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSV 727 (1150)
Q Consensus 652 ~~~~~~~d~idlLrEQ~KmL~gEv----a~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~ 727 (1150)
|+....--++|.|.++ |..+.+- ..-+.+|+-|-+-....-+..+.+.++...-.++++.++++..|-+......
T Consensus 36 p~~~~iq~~l~~~~~~-~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~ 114 (1113)
T PRK11281 36 PTEADVQAQLDALNKQ-KLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEET 114 (1113)
T ss_pred CCHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccc
Confidence 4444444556666553 4444333 3344555555555554455555566666666666666666555443222222
Q ss_pred ccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHH
Q 001118 728 ERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQE 783 (1150)
Q Consensus 728 ~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe 783 (1150)
.....+.+..++.+.+.++.+||++ .|++|..=.+....+|.
T Consensus 115 ~~~~~~~Sl~qLEq~L~q~~~~Lq~--------------~Q~~La~~NsqLi~~qT 156 (1113)
T PRK11281 115 RETLSTLSLRQLESRLAQTLDQLQN--------------AQNDLAEYNSQLVSLQT 156 (1113)
T ss_pred cccccccCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhhc
Confidence 2222333344555555555555552 45556555555555544
No 201
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=57.27 E-value=6 Score=44.70 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=17.1
Q ss_pred cCC-CeEEEEeccCCCCCceeec
Q 001118 149 QGI-NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 149 ~Gy-N~tIfAYGQTGSGKTyTM~ 170 (1150)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 453 4567779999999999874
No 202
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=56.99 E-value=6.4 Score=39.39 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=17.4
Q ss_pred HHhhcCCCeEEEEeccCCCCCceeec
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..++.+. ..++..|+||||||.++.
T Consensus 18 ~~~~~~~-~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 18 EALLSGL-RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred HHHHcCC-CcEEEECCCCCchhHHHH
Confidence 3444442 455677899999999875
No 203
>PHA00729 NTP-binding motif containing protein
Probab=56.74 E-value=8.4 Score=42.88 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 140 AQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 140 v~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
++-++..+..|--..|+.+|.+|+||||...
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 4556666655444589999999999998765
No 204
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=56.68 E-value=5.3e+02 Score=33.01 Aligned_cols=62 Identities=29% Similarity=0.336 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhh
Q 001118 867 LMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEA 942 (1150)
Q Consensus 867 ~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~ 942 (1150)
..+..|+++|+.++.+|...-..++... |. ..++++.+-+|+.....+|++|.+++...+..
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~----------~~----l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~ 385 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEI----------KM----LKSSLKQLEEELEEKEAENEELEEELKLKKKT 385 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888777777666555554332 22 23678889999999999999999998855433
No 205
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.38 E-value=13 Score=34.53 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhhhhhhhh
Q 001118 870 AAEIENLKQERVKLVEERDGLEIHSQKLAEE 900 (1150)
Q Consensus 870 ~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee 900 (1150)
.-||++||.+...|.+++..|...|++|.+|
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666544
No 206
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=56.03 E-value=13 Score=48.38 Aligned_cols=100 Identities=19% Similarity=0.291 Sum_probs=56.8
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhh-hcCCCceEEEEEeeeeeecchh-hc---cCCC
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGII-QETPGREFLLRVSYLEIYNEVI-ND---LLDP 218 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I-~~~~~~~f~V~VSylEIYNE~V-~D---LL~p 218 (1150)
+..+.+|.|+.|.| +||||||-+-| +| ++..|+..- ....+.-+.++||=+---|.-| +- .+..
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAAf--------Lp-il~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~ 99 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAAF--------LP-VINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRE 99 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHHH--------HH-HHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 34567999999988 99999998744 44 455565542 1122345667777664443222 21 2222
Q ss_pred CCCceEEEeCC-----CCcEEeCcEEEEeCCHHHHHHHhhh
Q 001118 219 TGQNLRIREDA-----QGTYVEGIKEEVVLSPAHALSLIAT 254 (1150)
Q Consensus 219 ~~~~L~IrEd~-----~Gv~V~GLsev~V~S~ee~l~lL~~ 254 (1150)
.+-++.+|... +.-.+.+--.+.+++++.+.-+|..
T Consensus 100 ~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~ 140 (814)
T COG1201 100 LGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNS 140 (814)
T ss_pred cCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcC
Confidence 23334444321 1234555566777788877766653
No 207
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=55.58 E-value=3.8 Score=41.75 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=15.2
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+++....|-..+++-+|.+|+|||+.+.
T Consensus 15 ~l~~~~~~~~~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 15 LLDAAQSGSPRNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp TTGGTSS-----EEE-B-TTSSHHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCCHHHHHH
Confidence 3333346667889999999999998753
No 208
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=55.40 E-value=4.1 Score=43.91 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.0
Q ss_pred EEEEeccCCCCCceeec
Q 001118 154 TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~ 170 (1150)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47788999999999985
No 209
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=54.69 E-value=5.3e+02 Score=32.33 Aligned_cols=52 Identities=35% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHH
Q 001118 872 EIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVT 923 (1150)
Q Consensus 872 eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevt 923 (1150)
+++-++-+-.+..+.-..|-..-|+|..|+--||.-|.++-.|+..+-.|+-
T Consensus 352 eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e 403 (522)
T PF05701_consen 352 ELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAE 403 (522)
T ss_pred HHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444445568888899999999999999999999888888764
No 210
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=54.40 E-value=22 Score=42.25 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=37.7
Q ss_pred ee-eeeCCCCcchhHHHHHHHHHHHHhhcC---CCeEEEEeccCCCCCcee---------------------ecC----C
Q 001118 122 FD-KVFGPATTTRHVYDVAAQHVVNGAMQG---INGTVFAYGVTSSGKTHT---------------------MHG----E 172 (1150)
Q Consensus 122 FD-~VF~~~atQeeVYe~vv~plV~~vL~G---yN~tIfAYGQTGSGKTyT---------------------M~G----~ 172 (1150)
|| .||+- ++..+.++. .+.....| -+-.+.-.|++|||||.. +-| +
T Consensus 49 F~~~~~G~----~~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 49 FDHDFFGM----EEAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred cchhccCc----HHHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 55 77774 444444443 33333344 346678899999999953 334 2
Q ss_pred C---CCCCchhhHHHHHHH
Q 001118 173 Q---KSPGIIPLAVKDVFG 188 (1150)
Q Consensus 173 ~---~~~GIIPRal~dLF~ 188 (1150)
+ ..-|++|...++.|.
T Consensus 124 p~~e~Pl~l~p~~~r~~~~ 142 (361)
T smart00763 124 PMHEDPLHLFPDELREDLE 142 (361)
T ss_pred CCccCCcccCCHHHHHHHH
Confidence 2 123888888888774
No 211
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=54.32 E-value=44 Score=38.57 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=52.0
Q ss_pred CchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcccc
Q 001118 655 TTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTL 734 (1150)
Q Consensus 655 ~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~ 734 (1150)
..++|+.--+||..|-+++-|...|..|+++++ ||..+|++|. +-|....+-+
T Consensus 283 r~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~--------------------e~E~~KqemE-------e~G~~msDGa 335 (384)
T KOG0972|consen 283 RRATDTLSELREKYKQASVGVSSRTETLDEVMD--------------------EIEQLKQEME-------EQGAKMSDGA 335 (384)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--------------------HHHHHHHHHH-------HhcccccCCc
Confidence 457888999999999999999999999988763 3344444432 2344455666
Q ss_pred ccchhhhHHHHHH---Hhhc
Q 001118 735 STTEMSQALSKLT---TQLN 751 (1150)
Q Consensus 735 ~~~e~~q~~~~l~---~qln 751 (1150)
...-+-|+++||- .|+|
T Consensus 336 plvkIkqavsKLk~et~~mn 355 (384)
T KOG0972|consen 336 PLVKIKQAVSKLKEETQTMN 355 (384)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 7789999999984 5677
No 212
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=54.01 E-value=5.5 Score=38.25 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=14.0
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999875
No 213
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=53.45 E-value=59 Score=31.59 Aligned_cols=66 Identities=20% Similarity=0.370 Sum_probs=47.7
Q ss_pred chhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCc
Q 001118 656 TITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTP 731 (1150)
Q Consensus 656 ~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~ 731 (1150)
...-.++.||.+.|.++-+|+---.+ .++-+.+..+++.++++|++...++..+|.++-.....-|
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~----------~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKA----------GEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHT----------TCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhC----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34455666666666666555543322 1677788899999999999999999999999877665544
No 214
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=52.88 E-value=11 Score=45.14 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=16.7
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678899999999999984
No 215
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=52.66 E-value=5.8e+02 Score=35.12 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=23.1
Q ss_pred HHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhh
Q 001118 910 SAAVELRNLAEEVTRLSYENAKLNSELAAAKEA 942 (1150)
Q Consensus 910 aaavElk~laeevtkl~~qN~kl~~el~~~~~~ 942 (1150)
..+-+|...++++..|..||.+-.+.+..++..
T Consensus 269 ~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~ 301 (1109)
T PRK10929 269 ELSQALNQQAQRMDLIASQQRQAASQTLQVRQA 301 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777888888888887777766655544
No 216
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=52.62 E-value=5.5 Score=43.96 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.2
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++.++..|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 67788888999999999985
No 217
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=52.23 E-value=12 Score=42.53 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.6
Q ss_pred EEEEeccCCCCCceeec
Q 001118 154 TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~ 170 (1150)
.|+-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999986
No 218
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=52.20 E-value=8.3e+02 Score=33.86 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHHHHhhh--------hHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001118 656 TITDQMDLLHEQMKMLAG--------EVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQR 722 (1150)
Q Consensus 656 ~~~d~idlLrEQ~KmL~g--------Eva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~ 722 (1150)
..-+.++.|+|.++-|.. +.|+-|.+.|...|.+. +...+.++|+.++..++.++..+.+.
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~------~~~~~~~~l~~~~~~~~eele~~q~~ 530 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLS------EEEAKKRKLEALVRQLEEELEDAQKK 530 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677755555433 33344456666555553 45566778888888888887777543
No 219
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.16 E-value=3.5e+02 Score=30.20 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=13.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhccc
Q 001118 702 MQKLKDEISEKKLQIRVLEQRMIGSVE 728 (1150)
Q Consensus 702 ~~~l~~ei~~k~~q~~~le~~i~~s~~ 728 (1150)
+-++..+|...+..-..|.++|.+.++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555544444
No 220
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.15 E-value=12 Score=42.66 Aligned_cols=72 Identities=25% Similarity=0.421 Sum_probs=44.6
Q ss_pred eeeeeCCCCcchhHHHHHHHHHHHHhh---cCCC--eEEEEeccCCCCCceee--------------cCCC---CCCCch
Q 001118 122 FDKVFGPATTTRHVYDVAAQHVVNGAM---QGIN--GTVFAYGVTSSGKTHTM--------------HGEQ---KSPGII 179 (1150)
Q Consensus 122 FD~VF~~~atQeeVYe~vv~plV~~vL---~GyN--~tIfAYGQTGSGKTyTM--------------~G~~---~~~GII 179 (1150)
|..|=+-+..-++|-+.+--|+...-+ =|++ -.|+.||+.|+|||... .|+. ..-|==
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgeg 233 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG 233 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC
Confidence 344445555555666666556655433 1332 35899999999998432 1221 124667
Q ss_pred hhHHHHHHHhhhcC
Q 001118 180 PLAVKDVFGIIQET 193 (1150)
Q Consensus 180 PRal~dLF~~I~~~ 193 (1150)
||.++++|....+.
T Consensus 234 prmvrdvfrlaken 247 (408)
T KOG0727|consen 234 PRMVRDVFRLAKEN 247 (408)
T ss_pred cHHHHHHHHHHhcc
Confidence 99999999987654
No 221
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=51.93 E-value=6e+02 Score=32.13 Aligned_cols=110 Identities=25% Similarity=0.352 Sum_probs=83.1
Q ss_pred HHHHhHHHHH--HHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCccccccccccccHHHHHHHH
Q 001118 905 KELASSAAVE--LRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKEL 982 (1150)
Q Consensus 905 K~LAsaaavE--lk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el 982 (1150)
||..|--.|+ ++.+.+-++.+..+|..|..|+...+.+=. -+ ....-.+..+..++
T Consensus 296 ~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~--L~--------------------~~e~~~~~~l~~~l 353 (560)
T PF06160_consen 296 KEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT--LN--------------------HNELEIVRELEKQL 353 (560)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC--------------------chHHHHHHHHHHHH
Confidence 4555555554 678899999999999999999998875531 00 00011234566666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhh
Q 001118 983 SSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLENELANMWVLIAKMRN 1036 (1150)
Q Consensus 983 ~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmwvlvaklk~ 1036 (1150)
..=..+=..+...+.++...=.++...+++..++=..+|.+...||--|+.|.+
T Consensus 354 ~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 354 KELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677888888998888999999999999999999999999999999965
No 222
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.96 E-value=4.5e+02 Score=30.44 Aligned_cols=116 Identities=18% Similarity=0.315 Sum_probs=66.7
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhccCCCCccccccCCCCCCCCchhhhhhhhccccCCCCCccccccCC
Q 001118 764 NRILQEQLQMKISENTEMQETILLLRQQIDSLSNKMSGSPEQMAENDGIPLKPCSEEISQQKNAWRNGLGSCEETFVDEH 843 (1150)
Q Consensus 764 nrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1150)
++++.++++.+-++..++|+.+..++-+|.++...-. .|.
T Consensus 26 a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~-------------------~~~--------------------- 65 (265)
T COG3883 26 AALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIE-------------------EIQ--------------------- 65 (265)
T ss_pred hhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHH---------------------
Confidence 3456666888888888888888888888877654321 000
Q ss_pred CCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHH-----HHHHhh
Q 001118 844 TPTSVMSLNRIFSHEESNLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAA-----VELRNL 918 (1150)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaa-----vElk~l 918 (1150)
...+.+..++-.-..||++|+++. .+-+..+..|+.+|.+=++-+--=.++.. ++=|++
T Consensus 66 -------------~k~~~~~~~i~~~~~eik~l~~eI---~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSf 129 (265)
T COG3883 66 -------------SKIDELQKEIDQSKAEIKKLQKEI---AELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSF 129 (265)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcH
Confidence 011112222222234444454443 34455677778887776554433333333 455888
Q ss_pred HHHHHHhhhhhhhhhhH
Q 001118 919 AEEVTRLSYENAKLNSE 935 (1150)
Q Consensus 919 aeevtkl~~qN~kl~~e 935 (1150)
++=|.|+..=|.=..++
T Consensus 130 sD~IsRvtAi~~iv~aD 146 (265)
T COG3883 130 SDLISRVTAISVIVDAD 146 (265)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888877666555444
No 223
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=50.86 E-value=5.1 Score=51.13 Aligned_cols=123 Identities=21% Similarity=0.301 Sum_probs=0.0
Q ss_pred CchhHHHHHHHH---HHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCc
Q 001118 655 TTITDQMDLLHE---QMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTP 731 (1150)
Q Consensus 655 ~~~~d~idlLrE---Q~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~ 731 (1150)
..-=|.||.||+ ++.-|+.+|.-+-.=|..+- .++.+|+.|++....--+++..||-....+.....
T Consensus 294 ~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~----------~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~ 363 (713)
T PF05622_consen 294 RALRDELDELREKADRADKLENEVEKYKKKLEDLE----------DLKRQVKELEEDNAVLLETKAMLEEELKKARALKS 363 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344578888876 56667766666554443332 23456777777777777777777776654332211
Q ss_pred cccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001118 732 HTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQ 790 (1150)
Q Consensus 732 ~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~q 790 (1150)
..-...+-+.+|-..|++..=+.+--.-+|.-|++.+..=..|.+.|..+...|+.
T Consensus 364 ---qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 364 ---QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRE 419 (713)
T ss_dssp -----------------------------------------------------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122233334444444333222222234444555554444444444444444444
No 224
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=50.84 E-value=4.6e+02 Score=30.54 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhh
Q 001118 869 QAAEIENLKQERVKLVEERDGLEIHSQKLAEEAS 902 (1150)
Q Consensus 869 q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~s 902 (1150)
...|+--||-|.-.|.|.-+-|+..+|||.-|.-
T Consensus 58 ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 58 EKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
Confidence 3457778999999999999999999999998863
No 225
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=50.61 E-value=9.6 Score=39.90 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=17.5
Q ss_pred HHHhhcCCCeEEEEeccCCCCCcee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyT 168 (1150)
++.++.|.| ++..++||+|||.+
T Consensus 30 ~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 30 IPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHhcCCc--EEEECCCCCcHHHH
Confidence 344555777 57788999999987
No 226
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=50.49 E-value=40 Score=43.25 Aligned_cols=9 Identities=22% Similarity=0.003 Sum_probs=4.4
Q ss_pred EEeecCCCC
Q 001118 301 NLIDLAGSE 309 (1150)
Q Consensus 301 ~LVDLAGSE 309 (1150)
+|.|-++..
T Consensus 535 nF~dsv~ll 543 (830)
T KOG1923|consen 535 NFPDSVQLL 543 (830)
T ss_pred hchhhhhhh
Confidence 445555444
No 227
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=50.39 E-value=9.9 Score=41.71 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=14.2
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+-.+++.|+.||||||.-.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHH
T ss_pred hCCeEEEECCCCCcHHHHHH
Confidence 45689999999999998653
No 228
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.29 E-value=8.2e+02 Score=33.28 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=47.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHH
Q 001118 704 KLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQE 783 (1150)
Q Consensus 704 ~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe 783 (1150)
-+..+|...+..++.||+.|.. .++ -+|.+..|-.||+=|-.+|-. .-+|+=|.--.+-..++.++-+
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~-le~---------~~~kf~~l~~ql~l~~~~l~l--~~~r~~~~e~~~~~~~~~~~~e 748 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKS-LEA---------QSQKFRDLKQQLELKLHELAL--LEKRLEQNEFHKLLDDLKELLE 748 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHHHHHHHHH--HHHHHhcChHhhHHHHHHHHHH
Confidence 3445666666777777776543 222 245677777788777766643 2233333333344556667777
Q ss_pred HHHHHHHHHHHh
Q 001118 784 TILLLRQQIDSL 795 (1150)
Q Consensus 784 ~v~~l~qql~~~ 795 (1150)
.|..+++||-..
T Consensus 749 ~v~e~~~~Ike~ 760 (1174)
T KOG0933|consen 749 EVEESEQQIKEK 760 (1174)
T ss_pred HHHHHHHHHHHH
Confidence 777777777553
No 229
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=50.24 E-value=9.4 Score=40.32 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+++..++.. ...+.-.|+||||||.+|.
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 455555544 3456778999999998874
No 230
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=50.00 E-value=53 Score=36.00 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHhHccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHH
Q 001118 378 ASSNSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLE 457 (1150)
Q Consensus 378 s~~~~eETLsTLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle 457 (1150)
+..++--++.-|.++++==.-.|....-.+......-.+|..+|..|+.++..++..+.... ......+++...-..++
T Consensus 2 ~t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK-~l~eEledLk~~~~~lE 80 (193)
T PF14662_consen 2 ATSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAK-ALEEELEDLKTLAKSLE 80 (193)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34445555666666644222222222222222233345677778888888777654321111 11112223333334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 458 AGQVKLQSRLEEEEQEKAALLGRIQRLT 485 (1150)
Q Consensus 458 ~~~~~Lq~~Lee~ee~~~~L~~~i~~L~ 485 (1150)
+....|..+..+.+.++..|..+|..|.
T Consensus 81 E~~~~L~aq~rqlEkE~q~L~~~i~~Lq 108 (193)
T PF14662_consen 81 EENRSLLAQARQLEKEQQSLVAEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666553
No 231
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=49.68 E-value=1.8e+02 Score=33.99 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCCccc
Q 001118 1004 GELRKRIDEAKRHEEDLENELANMWVLIAKMRNSGINGEDMSSR 1047 (1150)
Q Consensus 1004 ~e~~~~~~e~k~~e~~len~lanmwvlvaklk~~~~~~~~~~~~ 1047 (1150)
..++..+-+..+.-..|++-+..+=--+.+|++-++=..-|.+.
T Consensus 102 n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~ 145 (314)
T PF04111_consen 102 NELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDTFHIW 145 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT--EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhceeeEe
Confidence 33444444444455566666666666778999887655555443
No 232
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=49.19 E-value=5.5 Score=42.32 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=13.3
Q ss_pred EEEEeccCCCCCceeec
Q 001118 154 TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~ 170 (1150)
-++.+|+||||||+++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57899999999999886
No 233
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=49.13 E-value=11 Score=42.46 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=17.6
Q ss_pred CCCeEEEEeccCCCCCceee
Q 001118 150 GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM 169 (1150)
.-+.+|.-||+-|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56788999999999999876
No 234
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=49.13 E-value=4e+02 Score=32.54 Aligned_cols=27 Identities=26% Similarity=0.190 Sum_probs=16.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001118 767 LQEQLQMKISENTEMQETILLLRQQID 793 (1150)
Q Consensus 767 lqeql~~k~~e~~elqe~v~~l~qql~ 793 (1150)
+++||++--.+..+++..+..|++|+.
T Consensus 209 l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 209 AQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555566667777777777664
No 235
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=49.06 E-value=8.1 Score=45.08 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=19.6
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++..++.+. ..|+-.|.||||||.+|.
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 3444455432 457888999999999984
No 236
>PTZ00424 helicase 45; Provisional
Probab=49.06 E-value=8.7 Score=44.75 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=18.9
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34556788885 46789999999765
No 237
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=48.70 E-value=22 Score=39.84 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=32.0
Q ss_pred EeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCCCC
Q 001118 241 VVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGSES 310 (1150)
Q Consensus 241 ~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGSEr 310 (1150)
.+.+++++...+...... ..+. ...-|.-++.|.|..... -.|+||||+|-.+
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~-----------~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV-----------LNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC-----------CceEEEeCCCccc
Confidence 345788888887654432 1111 123455678888853311 2489999999964
No 238
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=48.48 E-value=9.6 Score=44.91 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=21.4
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++..++.+. +.|+-.|.||||||+++.
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 4455555555 788999999999999873
No 239
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=48.41 E-value=64 Score=29.81 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=46.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHH
Q 001118 704 KLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQE 783 (1150)
Q Consensus 704 ~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe 783 (1150)
+|+.+|...+.+...|.+++...... .+...+ .+--.--||..++.+|.+|++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~--------------~k~L~~-------------ERd~~~~~l~~a~~e~~~Lk~ 54 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIE--------------NKRLRR-------------ERDSAERQLGDAYEENNKLKE 54 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888887544322 222222 222233479999999999999
Q ss_pred HHHHHHHHHHHh
Q 001118 784 TILLLRQQIDSL 795 (1150)
Q Consensus 784 ~v~~l~qql~~~ 795 (1150)
++..|+++|...
T Consensus 55 E~e~L~~el~~~ 66 (69)
T PF14197_consen 55 ENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
No 240
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=47.88 E-value=10 Score=45.48 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=18.5
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..+++|.| +++.++||||||.+.
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 345678887 677889999999763
No 241
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=47.52 E-value=5.7 Score=38.35 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=20.8
Q ss_pred EEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhh
Q 001118 155 VFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGII 190 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I 190 (1150)
|+-||++|.|||+.+. ..+.+|...+
T Consensus 1 I~i~G~~G~GKS~l~~----------~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK----------ELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHH----------HHHHHHHHHh
Confidence 5789999999999886 5666777665
No 242
>PRK06547 hypothetical protein; Provisional
Probab=47.20 E-value=15 Score=38.80 Aligned_cols=28 Identities=29% Similarity=0.184 Sum_probs=19.5
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.++..+..+.---|+-+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 4445555555556667799999999865
No 243
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=47.00 E-value=7.6 Score=38.23 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=13.3
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 244
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=46.65 E-value=98 Score=34.25 Aligned_cols=47 Identities=28% Similarity=0.423 Sum_probs=38.2
Q ss_pred HHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 001118 743 LSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLS 796 (1150)
Q Consensus 743 ~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~ 796 (1150)
+..|...++.|.-|||+ .+.+|+.+.+|..-|+++|..|++.+..+=
T Consensus 54 ~~~l~~~~~~K~~ELE~-------ce~ELqr~~~Ea~lLrekl~~le~El~~Lr 100 (202)
T PF06818_consen 54 IQELQDSLRTKQLELEV-------CENELQRKKNEAELLREKLGQLEAELAELR 100 (202)
T ss_pred HHHHHHHHHHhhHhHHH-------hHHHHHHHhCHHHHhhhhhhhhHHHHHHHH
Confidence 44556667778888875 889999999999999999999998887644
No 245
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=46.57 E-value=2.1e+02 Score=32.35 Aligned_cols=67 Identities=31% Similarity=0.368 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHh
Q 001118 875 NLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKE 941 (1150)
Q Consensus 875 ~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~ 941 (1150)
.|.++..++.+++..|+....+..+|=..--.=...+..++..|.+++.+--.+..+|..+|..++.
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433322222222233344445555555555555555555555554
No 246
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=46.51 E-value=10 Score=44.24 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=19.7
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++..++.+. +.|+..|.||||||.+|.
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 4455455443 457778999999999884
No 247
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=46.36 E-value=49 Score=35.70 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=40.5
Q ss_pred HHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 001118 743 LSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLS 796 (1150)
Q Consensus 743 ~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~ 796 (1150)
+..|.+.+.....+|+.|...|-+||+-+..=.-++.-+.+++..|++.=..++
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666677888888889999888888888888888888887755544
No 248
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.22 E-value=17 Score=43.21 Aligned_cols=90 Identities=21% Similarity=0.259 Sum_probs=54.3
Q ss_pred CCeeeeeecCCCCcc-cccCCCeEEEeeCCCeEEecCCC---Cc---------eeEeeeeeeCCCCcchhHHHHHHHHHH
Q 001118 78 ENVMVTVRFRPLSPR-EVNKGDEIAWYADGDYTVRNEYN---PS---------IAYGFDKVFGPATTTRHVYDVAAQHVV 144 (1150)
Q Consensus 78 ~~VrV~VRVRPl~~~-E~~~g~~v~~~~d~~~~v~~~~~---~s---------~~F~FD~VF~~~atQeeVYe~vv~plV 144 (1150)
..-+.+|++.+...+ ++.+|..+.+..+...++..-++ +. -.-+|+-|=+-+..-++|.+.+--|+.
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~ 172 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLK 172 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhccccc
Confidence 345678888886544 46788888776666555432211 10 113345555544555667777766765
Q ss_pred HH-hh--cCCC--eEEEEeccCCCCCce
Q 001118 145 NG-AM--QGIN--GTVFAYGVTSSGKTH 167 (1150)
Q Consensus 145 ~~-vL--~GyN--~tIfAYGQTGSGKTy 167 (1150)
+- .| =|+. -.|+-||+.|+|||-
T Consensus 173 ~PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 173 NPELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred CHHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 43 22 2443 358999999999984
No 249
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=46.16 E-value=8.7 Score=45.31 Aligned_cols=43 Identities=19% Similarity=0.374 Sum_probs=29.9
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.|.|+.|-+ |+++- .-++..+.+-.-+.|+-+|.+||||||.+
T Consensus 13 ~~pf~~ivG----q~~~k----~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 13 VFPFTAIVG----QEEMK----LALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCHHHHhC----hHHHH----HHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 588888876 33333 34445555444456889999999999987
No 250
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=46.13 E-value=6.6 Score=38.87 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=13.4
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999875
No 251
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=45.83 E-value=8.6 Score=40.65 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.9
Q ss_pred eEEEEeccCCCCCceee
Q 001118 153 GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM 169 (1150)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 57889999999999965
No 252
>PRK04325 hypothetical protein; Provisional
Probab=45.64 E-value=47 Score=30.95 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 001118 659 DQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIG 725 (1150)
Q Consensus 659 d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~ 725 (1150)
|.++-+.+.+--|+.-+||...++..|.+.-+ .-..+|...++|++.|=.|+.+
T Consensus 2 ~~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~-------------~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 2 DAVQEMEDRITELEIQLAFQEDLIDGLNATVA-------------RQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999877776543 2334445555555555555544
No 253
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=45.53 E-value=13 Score=47.14 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=27.6
Q ss_pred chhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 132 TRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 132 QeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.-.||...-.-.-.-...|.|-||+-.|.+|||||+|+-
T Consensus 65 ~PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~k 103 (689)
T PF00063_consen 65 PPHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETSK 103 (689)
T ss_dssp -SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHHH
T ss_pred cCccchhhhcccccccccccccceeeccccccccccchH
Confidence 345776443333333347899999999999999999963
No 254
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=44.97 E-value=25 Score=33.39 Aligned_cols=32 Identities=34% Similarity=0.455 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhhccc-------hhhhhhhhhhhh
Q 001118 870 AAEIENLKQERVKLVEERDG-------LEIHSQKLAEEA 901 (1150)
Q Consensus 870 ~~eie~lk~~~~~l~e~k~~-------l~~~nqkl~ee~ 901 (1150)
.-|||+||.+...|.++... |+-.|++|-+|-
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34777887777777776443 777777776653
No 255
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=44.88 E-value=19 Score=40.17 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=15.7
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
...++-||++|+|||++..
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3557889999999999874
No 256
>PLN03025 replication factor C subunit; Provisional
Probab=44.85 E-value=13 Score=42.53 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.1
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..++-||+.|+|||++..
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 346669999999999986
No 257
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=44.65 E-value=8.7 Score=36.67 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.5
Q ss_pred EEEeccCCCCCceeec
Q 001118 155 VFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~ 170 (1150)
|+-.|.+|||||+...
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 6788999999998763
No 258
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=44.52 E-value=8.4 Score=45.29 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=19.7
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++..++. ..+.|+..|.||||||++|.
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 34444443 23557888999999999884
No 259
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=44.51 E-value=12 Score=44.43 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=19.6
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.|..+++|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455678877 788899999999874
No 260
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=44.27 E-value=1.7e+02 Score=32.15 Aligned_cols=67 Identities=28% Similarity=0.233 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhh--HHHHHHhhhhhhhhhhHHHHHHhh
Q 001118 868 MQAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNL--AEEVTRLSYENAKLNSELAAAKEA 942 (1150)
Q Consensus 868 ~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~l--aeevtkl~~qN~kl~~el~~~~~~ 942 (1150)
...-|.|.|.|+..++..+++.|..+-.....|.- -=.++||+ .-.|..|..+.++-.++|..+-..
T Consensus 104 ~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq--------Qk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 104 DLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ--------QKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888999999999999998877665444432 12345554 466888888888888888876544
No 261
>PRK13764 ATPase; Provisional
Probab=44.14 E-value=11 Score=47.54 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=16.9
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
....|+..|+||||||+++.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 34558999999999999985
No 262
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=43.97 E-value=13 Score=46.07 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=23.2
Q ss_pred HHHHHHHhhcCCC--eEEEEeccCCCCCceeec
Q 001118 140 AQHVVNGAMQGIN--GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 140 v~plV~~vL~GyN--~tIfAYGQTGSGKTyTM~ 170 (1150)
++..+...+.|.. ..++-+|++|+|||.|+.
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 4556666665553 467889999999999984
No 263
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=43.68 E-value=2.7e+02 Score=38.08 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=22.0
Q ss_pred ccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 001118 760 KSADNRILQEQLQMKISENTEMQETILLLRQQIDSLS 796 (1150)
Q Consensus 760 k~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~ 796 (1150)
+..+..=|+.+|.+-.++..++|+..+....++.++.
T Consensus 100 ~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~ 136 (1109)
T PRK10929 100 PNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREIS 136 (1109)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4444555666666666666666666666655554433
No 264
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=43.44 E-value=16 Score=41.03 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=23.8
Q ss_pred CCcchhHHHHHHHHHHHHhhc--CCCeEEEEeccCCCCCceeec
Q 001118 129 ATTTRHVYDVAAQHVVNGAMQ--GINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 129 ~atQeeVYe~vv~plV~~vL~--GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-..|+++.+.+. .++..... +....++-||++|+|||+...
T Consensus 6 ~iG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 6 FIGQEKVKEQLQ-LFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 344666655432 33333221 222346779999999998764
No 265
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.37 E-value=2.2e+02 Score=29.95 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=41.3
Q ss_pred CCCchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHH------------------h-cCCcchHHHHHHHHhHHHHHHHH
Q 001118 653 SGTTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQA------------------A-SNSEDSQLREHMQKLKDEISEKK 713 (1150)
Q Consensus 653 ~~~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A------------------~-~~p~~~~i~~~~~~l~~ei~~k~ 713 (1150)
++-.+.|..|-|+-+|+ ++.-+..|+.|++.- . ..|.+ .++..+..+|...+
T Consensus 15 RPys~~di~~nL~~~~~-----K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~----eel~~ld~ei~~L~ 85 (169)
T PF07106_consen 15 RPYSAQDIFDNLHNKVG-----KTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSP----EELAELDAEIKELR 85 (169)
T ss_pred CCCcHHHHHHHHHhhcc-----HHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCc----hhHHHHHHHHHHHH
Confidence 45567888888887665 577888899988752 1 12222 33666666677777
Q ss_pred HHHHHHHHHhh
Q 001118 714 LQIRVLEQRMI 724 (1150)
Q Consensus 714 ~q~~~le~~i~ 724 (1150)
.|++.|++.+.
T Consensus 86 ~el~~l~~~~k 96 (169)
T PF07106_consen 86 EELAELKKEVK 96 (169)
T ss_pred HHHHHHHHHHH
Confidence 77766666543
No 266
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=43.30 E-value=56 Score=40.15 Aligned_cols=65 Identities=25% Similarity=0.388 Sum_probs=57.2
Q ss_pred chhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 001118 656 TITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMI 724 (1150)
Q Consensus 656 ~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~ 724 (1150)
-.--|+.|+++-++-|..++.-+...|+.+-- ++.+.+++.+++.+..+|...++.|..|+.-|.
T Consensus 160 p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~ 224 (475)
T PF10359_consen 160 PRRVQIELIQERLDELEEQIEKHEEKLGELEL----NPDDPELKSDIEELERHISSLKERIEFLENMLE 224 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhcccc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34569999999999999999999988887665 999999999999999999999999999987543
No 267
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=43.02 E-value=96 Score=27.99 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001118 410 EKSLIKKYQKEITFLKQELQQLKRGMMDN 438 (1150)
Q Consensus 410 ~~~li~~lqkEI~~Lk~EL~~lk~~~~~~ 438 (1150)
....+.+|++++..++.++..+...+...
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~ 30 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNE 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 35668899999999999999888776543
No 268
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=42.99 E-value=9.7 Score=43.56 Aligned_cols=18 Identities=33% Similarity=0.480 Sum_probs=14.9
Q ss_pred CeEEEEeccCCCCCceee
Q 001118 152 NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM 169 (1150)
--+|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 456889999999998764
No 269
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=42.89 E-value=38 Score=43.51 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=17.7
Q ss_pred HHHHHhhHHHHHHhhhhhhhhhhHHHH
Q 001118 912 AVELRNLAEEVTRLSYENAKLNSELAA 938 (1150)
Q Consensus 912 avElk~laeevtkl~~qN~kl~~el~~ 938 (1150)
--++..|..|+.+|..+|+-|..+|..
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336666666677777777777666653
No 270
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.79 E-value=11 Score=44.91 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=17.6
Q ss_pred hcCCCeEEEEeccCCCCCceeec
Q 001118 148 MQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 148 L~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.+.-..++-||++|+|||+...
T Consensus 32 ~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 32 EAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred HcCCCceEEEECCCCCCHHHHHH
Confidence 34555567779999999998764
No 271
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=42.17 E-value=8.5 Score=46.94 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=29.9
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHH-hhc--C--CCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNG-AMQ--G--INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~-vL~--G--yN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++||.|.+.+.....+.+ ++..+-.. .+. | ..-.|+-||++|||||+..-
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 4678888876555444443 22221110 111 2 23358889999999999863
No 272
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=42.15 E-value=5.1e+02 Score=30.97 Aligned_cols=143 Identities=24% Similarity=0.246 Sum_probs=87.6
Q ss_pred hhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhccCCCCccccccCCCCCCCCch
Q 001118 740 SQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLSNKMSGSPEQMAENDGIPLKPCSE 819 (1150)
Q Consensus 740 ~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1150)
.|-+..|..++-| .|.-||=||+.=..||.|+-|+...|-+.|++++--.. . .
T Consensus 129 ~q~LE~li~~~~E----------En~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq-----~----------L-- 181 (401)
T PF06785_consen 129 IQHLEGLIRHLRE----------ENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQ-----E----------L-- 181 (401)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH-----H----------H--
Confidence 3456667777664 47888889999999999999999999999988763210 0 0
Q ss_pred hhhhhhhccccCCCCCccccccCCCCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhh
Q 001118 820 EISQQKNAWRNGLGSCEETFVDEHTPTSVMSLNRIFSHEESNLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAE 899 (1150)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~e 899 (1150)
|.. -.+++++-|. .-.....+++.|.++|+.-.-||-+|=|=-.-..|. +. .+
T Consensus 182 ------~~e------yQatf~eq~~------ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~---~p------~~ 234 (401)
T PF06785_consen 182 ------NDE------YQATFVEQHS------MLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKES---MP------ST 234 (401)
T ss_pred ------HHH------hhcccccchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---CC------CC
Confidence 000 0122222111 111223477778888877777887776543322221 11 11
Q ss_pred hhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHh
Q 001118 900 EASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKE 941 (1150)
Q Consensus 900 e~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~ 941 (1150)
++.-++++-....-|||..+.-|. |..-+.-|.+.+-
T Consensus 235 ~~~~s~~v~~ql~selkkivf~~e-----nie~A~slTasry 271 (401)
T PF06785_consen 235 PSPSSQDVPKQLVSELKKIVFKVE-----NIEAASSLTASRY 271 (401)
T ss_pred CcchhhhhHHHHHHHHHHHHHHHh-----hHHHHHHhhHHhh
Confidence 223556666666778888887765 7777777766653
No 273
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=42.04 E-value=10 Score=40.33 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=15.0
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
.-..||..||.|||||+.+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHH
Confidence 34678899999999998764
No 274
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=41.66 E-value=14 Score=43.91 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+..++.|.| |++-++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 3445678887 466779999999864
No 275
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.57 E-value=7.2e+02 Score=33.89 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=31.5
Q ss_pred hhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHH
Q 001118 896 KLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAA 938 (1150)
Q Consensus 896 kl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~ 938 (1150)
|...|..=+|..+.-|.-||-.|..|++-+--+=+++..|--.
T Consensus 853 ~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~ 895 (1141)
T KOG0018|consen 853 KKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHN 895 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 4566777788888888888888888887777777777766433
No 276
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=41.43 E-value=18 Score=40.49 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=17.0
Q ss_pred cCCCeEEEEeccCCCCCceeec
Q 001118 149 QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|....++-||+.|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4444457889999999998774
No 277
>PRK11281 hypothetical protein; Provisional
Probab=41.13 E-value=1.1e+03 Score=32.66 Aligned_cols=126 Identities=13% Similarity=0.168 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhhhHhhhhchHHHHHHHHhc-------CCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcc-
Q 001118 661 MDLLHEQMKMLAGEVALCTSSLKRLSEQAAS-------NSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPH- 732 (1150)
Q Consensus 661 idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~-------~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~- 732 (1150)
.|.|+.++.-...++.--+..|.++...... +..-.+++..+..+.++..+.+.+.+.++.++++.-....-
T Consensus 82 ~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERA 161 (1113)
T PRK11281 82 TEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERA 161 (1113)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 3445555555555555555566666542111 11115677778888999999999999999888875443221
Q ss_pred ccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001118 733 TLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQI 792 (1150)
Q Consensus 733 ~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql 792 (1150)
-....+..+.+.++..|||- .+..+.-+-+.|...=..|-.-+.-.+..++|.|
T Consensus 162 Q~~lsea~~RlqeI~~~L~~------~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 162 QAALYANSQRLQQIRNLLKG------GKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhC------CCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11225777777778888873 2222322333344433444444444444444444
No 278
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=41.10 E-value=13 Score=38.20 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=18.5
Q ss_pred EEEeccCCCCCceeecCCCCCCCchhhHHHHHHHh
Q 001118 155 VFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGI 189 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~ 189 (1150)
+--.|.||+||||+-. .+++.||..
T Consensus 56 lSfHG~tGtGKn~v~~----------liA~~ly~~ 80 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVSR----------LIAEHLYKS 80 (127)
T ss_pred EEeecCCCCcHHHHHH----------HHHHHHHhc
Confidence 3457999999999753 566777764
No 279
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=41.09 E-value=73 Score=39.66 Aligned_cols=11 Identities=45% Similarity=0.839 Sum_probs=8.3
Q ss_pred ecchhhccCCC
Q 001118 208 YNEVINDLLDP 218 (1150)
Q Consensus 208 YNE~V~DLL~p 218 (1150)
+|..|.|.|+.
T Consensus 399 fntNitdmLdS 409 (574)
T PF07462_consen 399 FNTNITDMLDS 409 (574)
T ss_pred HHhhHHHHHHH
Confidence 57788888864
No 280
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=41.00 E-value=94 Score=40.17 Aligned_cols=11 Identities=55% Similarity=0.579 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 001118 869 QAAEIENLKQE 879 (1150)
Q Consensus 869 q~~eie~lk~~ 879 (1150)
|++=|-|||-+
T Consensus 767 q~~li~El~r~ 777 (830)
T KOG1923|consen 767 QAALIRELKRR 777 (830)
T ss_pred HHHHHHHHHHh
Confidence 44455555544
No 281
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.96 E-value=90 Score=39.46 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 001118 979 QKELSSRYQREADLEAALSEREQVEGELRKRIDEAK 1014 (1150)
Q Consensus 979 ~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k 1014 (1150)
.+|+.++..|=.-||-.|+|+..+=.+|.+++++.+
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666666666665544
No 282
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=40.69 E-value=18 Score=45.96 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=21.3
Q ss_pred HHHHHHHHhhc-----CCCeEEEEeccCCCCCceeec
Q 001118 139 AAQHVVNGAMQ-----GINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 139 vv~plV~~vL~-----GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
++..+++.+.. |.+..|+.. .||||||+||.
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~ 281 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHH
Confidence 34556666665 345555444 89999999997
No 283
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.52 E-value=11 Score=44.84 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=16.4
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
...|+-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4577789999999999985
No 284
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=40.10 E-value=16 Score=43.92 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=19.5
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.|..+++|.| |++..+||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3455678887 677889999999874
No 285
>PHA02244 ATPase-like protein
Probab=39.87 E-value=25 Score=42.05 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=25.2
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
..||.-|-.. ...+......+...+-.|.+ |+-+|+||+|||+..
T Consensus 92 ~~~d~~~ig~---sp~~~~~~~ri~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 92 SGIDTTKIAS---NPTFHYETADIAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred hhCCCcccCC---CHHHHHHHHHHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 3455544322 23333333344444445665 455899999999876
No 286
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=39.56 E-value=21 Score=43.04 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=16.2
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
..-|.-.||||.|||+|+-
T Consensus 203 ~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred CcEEEEECCCCCcHHHHHH
Confidence 5667778999999999984
No 287
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.46 E-value=1.6e+02 Score=36.46 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=59.8
Q ss_pred chhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcc---cc--C
Q 001118 656 TITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSV---ER--T 730 (1150)
Q Consensus 656 ~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~---~~--s 730 (1150)
...+.++-|++|++-|. .++..+.+++..-+.+++.|+.--.... .. .
T Consensus 68 ~~~~~~~~l~~~l~~l~---------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 120 (525)
T TIGR02231 68 PDPERLAELRKQIRELE---------------------------AELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAK 120 (525)
T ss_pred CCcHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 35567777777777766 3455566666666667766665322111 11 1
Q ss_pred ccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhc
Q 001118 731 PHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLSNK 798 (1150)
Q Consensus 731 ~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~ 798 (1150)
.+..+..++.+.+.-+.+|+- -|..++..-..+..++++++..|+++|..+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 121 RNEPDLKEWFQAFDFNGSEIE--------------RLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred cCCCCHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 112233344444444445542 233445555667789999999999999877653
No 288
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=39.36 E-value=1.1e+02 Score=28.27 Aligned_cols=64 Identities=31% Similarity=0.372 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHH
Q 001118 870 AAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAK 940 (1150)
Q Consensus 870 ~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~ 940 (1150)
+++|.-|.-+...++...+-.++.|..|.-|= ..|+--|...-+|..+|..+|+.|.+||...+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER-------d~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRER-------DSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777787777778888777888888887764 23334444556788888888888888876544
No 289
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=39.23 E-value=6.9e+02 Score=29.69 Aligned_cols=102 Identities=25% Similarity=0.302 Sum_probs=63.0
Q ss_pred HHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcccc-ccchhhhHHH
Q 001118 666 EQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTL-STTEMSQALS 744 (1150)
Q Consensus 666 EQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~-~~~e~~q~~~ 744 (1150)
|=+.||+.|..-|+.-=| +.+.-++.|...-+.-+.+++.|.+...+.+..+.... .+..++|.+.
T Consensus 9 eAL~IL~~eLe~cq~ErD-------------qyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~ 75 (319)
T PF09789_consen 9 EALLILSQELEKCQSERD-------------QYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLS 75 (319)
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHH
Confidence 556788888888876522 22334555555556667777777776665554433322 4466777777
Q ss_pred HHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001118 745 KLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDS 794 (1150)
Q Consensus 745 ~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 794 (1150)
+..+| |+-|++.+.+=.....|+|..|..|+++++.
T Consensus 76 ~sre~--------------Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 76 ESREQ--------------NKKLKEEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHH--------------HHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 66665 3444444444444556778888888888755
No 290
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.22 E-value=2.4e+02 Score=30.64 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC-------cc--ccCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Q 001118 411 KSLIKKYQKEITFLKQELQQLKRGMMDN-------PH--MAASSQDDLVNLKLQLE----------AGQVKLQSRLEEEE 471 (1150)
Q Consensus 411 ~~li~~lqkEI~~Lk~EL~~lk~~~~~~-------~~--~~~~~~~e~~~lk~qle----------~~~~~Lq~~Lee~e 471 (1150)
..++.+|+..|...|.....+...+... .. .......++..+..+|+ ..+.-|..+|++..
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~ 94 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQAR 94 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777766665444211 10 00011123443333333 34455888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 001118 472 QEKAALLGRIQRLTKLILVS 491 (1150)
Q Consensus 472 e~~~~L~~~i~~L~k~il~s 491 (1150)
.++.+|...+++|+......
T Consensus 95 ~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 95 KANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776553
No 291
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.09 E-value=5.1e+02 Score=30.31 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=27.3
Q ss_pred cCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhc
Q 001118 691 SNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGS 726 (1150)
Q Consensus 691 ~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s 726 (1150)
.-|.=+-.+--.+.|+.-|.+=++-++.+|.++..+
T Consensus 66 ~~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~ 101 (325)
T PF08317_consen 66 TVPMLELYQFSCRELKKYISEGRQIFEEIEEETYES 101 (325)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555545557889999999999999999988543
No 292
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.94 E-value=8.1e+02 Score=29.94 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhhhHhhhhchHHHHHHHH-hcCCcc--------hHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcccc
Q 001118 659 DQMDLLHEQMKMLAGEVALCTSSLKRLSEQA-ASNSED--------SQLREHMQKLKDEISEKKLQIRVLEQRMIGSVER 729 (1150)
Q Consensus 659 d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A-~~~p~~--------~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~ 729 (1150)
.-.+-|.+|++.+..++.-....|...-..- .-+|++ .+++.+...++.++.+.+.+++.|++++.+.-..
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~ 240 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPV 240 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 3445555555555555555555555443221 112332 2234444555556666666666777666532111
Q ss_pred CccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 001118 730 TPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLSN 797 (1150)
Q Consensus 730 s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 797 (1150)
.. . .-++.+..|..||++..=+|. .+......+--...+++.++..|++++...+.
T Consensus 241 ~~-~----~~~~~~~~l~~~l~~l~~~l~-------~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~ 296 (498)
T TIGR03007 241 LL-A----GSSVANSELDGRIEALEKQLD-------ALRLRYTDKHPDVIATKREIAQLEEQKEEEGS 296 (498)
T ss_pred cC-c----ccccCCCchHHHHHHHHHHHH-------HHHHHhcccChHHHHHHHHHHHHHHHHHhhcc
Confidence 11 0 012223334444442111110 01112222233445667777788888766554
No 293
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=38.92 E-value=4.3e+02 Score=26.96 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHh----cC-CcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCc
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAA----SN-SEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTP 731 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~----~~-p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~ 731 (1150)
.+..+..+.++++-+.-|+.-+...++.|...|. .. +....|...+..|+..-..-...+..-..++-..+....
T Consensus 31 d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~ 110 (213)
T cd00176 31 DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQ 110 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999988888888876543 22 466677777777777666666655555555544443322
Q ss_pred cccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhc
Q 001118 732 HTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLSNK 798 (1150)
Q Consensus 732 ~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~ 798 (1150)
......++..-+......|..- .. +. | -+.++....+++.+++++...+..+....+.
T Consensus 111 ~~~~~~~l~~wl~~~e~~l~~~--~~-~~--~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 168 (213)
T cd00176 111 FFRDADDLEQWLEEKEAALASE--DL-GK--D----LESVEELLKKHKELEEELEAHEPRLKSLNEL 168 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc--cc-CC--C----HHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 2222233555555555555421 11 11 2 3455555667777888887777777665543
No 294
>PRK04195 replication factor C large subunit; Provisional
Probab=38.90 E-value=13 Score=45.37 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=21.3
Q ss_pred HHHHHhhcCC-CeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGI-NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~Gy-N~tIfAYGQTGSGKTyTM~ 170 (1150)
.++.....|. ...++-||++|+|||++..
T Consensus 28 ~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 28 EWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 4445555554 5678889999999998874
No 295
>PRK10536 hypothetical protein; Provisional
Probab=38.85 E-value=15 Score=41.84 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=27.6
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|.|..|-+-+..|..... .+.+ +.-|+..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 3556666665555555443 2223 3489999999999999763
No 296
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=38.74 E-value=6e+02 Score=30.44 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=50.4
Q ss_pred hccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhh
Q 001118 886 ERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEA 942 (1150)
Q Consensus 886 ~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~ 942 (1150)
+-++|..+||||.++-..+.++=+-+.-+...|-+=|.+|-.+|.+|..-|.+....
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e 156 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQE 156 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 346789999999999999999998888899999999999999999999999887644
No 297
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=38.66 E-value=17 Score=38.54 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=19.3
Q ss_pred HHhhcCC---CeEEEEeccCCCCCceeec
Q 001118 145 NGAMQGI---NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 145 ~~vL~Gy---N~tIfAYGQTGSGKTyTM~ 170 (1150)
|.++.|- ...+.-||.+|||||.-..
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNICM 30 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4455444 5778899999999997653
No 298
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=38.63 E-value=19 Score=41.43 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.4
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 457789999999999875
No 299
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=38.62 E-value=1.9e+02 Score=35.98 Aligned_cols=34 Identities=38% Similarity=0.281 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhc
Q 001118 765 RILQEQLQMKISENTEMQETILLLRQQIDSLSNK 798 (1150)
Q Consensus 765 rilqeql~~k~~e~~elqe~v~~l~qql~~~~~~ 798 (1150)
|++||-|++|+.|+.-+||.+..|--||-++=++
T Consensus 215 ~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 215 RSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 7899999999999999999999999998765433
No 300
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=38.61 E-value=19 Score=44.09 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=23.8
Q ss_pred CCCCccceeEEeeCCCCCCHHHHHHHHHHHhH--cccccccc
Q 001118 363 LSGHGRISLICTVTPASSNSEETHNTLKFAHR--SKHVEIKA 402 (1150)
Q Consensus 363 LGGNskT~mIatISPs~~~~eETLsTLrFA~R--AK~Iknk~ 402 (1150)
|.-..+..+|||++.+.. ++..|.+|-| -.-|...|
T Consensus 320 f~iP~Nl~IIgTMNt~Dr----s~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADR----SLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCcccc----chhhccHHHHhhhheEEecC
Confidence 445678999999999875 4456777643 33444444
No 301
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=38.56 E-value=20 Score=46.31 Aligned_cols=18 Identities=44% Similarity=0.532 Sum_probs=15.4
Q ss_pred CeEEEEeccCCCCCceee
Q 001118 152 NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM 169 (1150)
|-.++.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 556778899999999887
No 302
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=38.33 E-value=3e+02 Score=34.51 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHH
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKD 707 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ 707 (1150)
.-..++.++++.+-+..++.+-+.-|+.|-+..-..-+++.|+.+.++|..
T Consensus 173 ~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n 223 (563)
T TIGR00634 173 ARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSN 223 (563)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhC
Confidence 445677777777888888888888888877776666677777777776654
No 303
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=37.68 E-value=1.4e+02 Score=36.22 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=41.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhh
Q 001118 699 REHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISEN 778 (1150)
Q Consensus 699 ~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~ 778 (1150)
..+++.|+++++..+.+|..|++.|...-..........+....+.+|.. .+.+...+.
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~---------------------~~~~l~~~~ 391 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKE---------------------KKKELKEEL 391 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHH---------------------HHHHHHHHH
Confidence 34456666666666666666666654433322222222344444444443 334455666
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001118 779 TEMQETILLLRQQIDSL 795 (1150)
Q Consensus 779 ~elqe~v~~l~qql~~~ 795 (1150)
.+|++.+..|+.+|...
T Consensus 392 ~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 392 KELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777777777777655
No 304
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=37.67 E-value=17 Score=49.08 Aligned_cols=34 Identities=29% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccCCCCCceeecC
Q 001118 137 DVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHG 171 (1150)
Q Consensus 137 e~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G 171 (1150)
...+..+++.+-.|...+++. .+||||||+||.+
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
No 305
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=37.58 E-value=2.4e+02 Score=33.13 Aligned_cols=60 Identities=37% Similarity=0.412 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhccc
Q 001118 869 QAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEALSRS 946 (1150)
Q Consensus 869 q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~~r~ 946 (1150)
+-+|+|+|-|-+.+| ||+-.|-|.|+-|. +..--.|..|+.+-.-|.-|||-+|-.+.|-
T Consensus 33 KV~EVEKLsqTi~EL---------------EEaiLagGaaaNav---rdYqrq~~elneEkrtLeRELARaKV~aNRV 92 (351)
T PF07058_consen 33 KVLEVEKLSQTIREL---------------EEAILAGGAAANAV---RDYQRQVQELNEEKRTLERELARAKVSANRV 92 (351)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHhcchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 457999999999987 67777877766665 4556678888888889999999999988773
No 306
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=37.56 E-value=2.9e+02 Score=36.36 Aligned_cols=131 Identities=24% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHhhhhchHHHH---------------HHHHhcCCcchHHHHHHHHh--------------HHHH
Q 001118 659 DQMDLLHEQMKMLAGEVALCTSSLKRL---------------SEQAASNSEDSQLREHMQKL--------------KDEI 709 (1150)
Q Consensus 659 d~idlLrEQ~KmL~gEva~~~s~Lkrl---------------~e~A~~~p~~~~i~~~~~~l--------------~~ei 709 (1150)
++++.|....+-|.++.+.|+..|+.+ .+.+.-+--++.+..|++.. +.|+
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~ 675 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEA 675 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhc---cchhhHHHH-HHHHhhhhhHHHHHHH
Q 001118 710 SEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIK---SADNRILQE-QLQMKISENTEMQETI 785 (1150)
Q Consensus 710 ~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik---~adnrilqe-ql~~k~~e~~elqe~v 785 (1150)
+....+|..||-.|-.---.+. |..+.+.+|-.||-=..=+.... ..|..+-|+ -|-.-..-..|=||||
T Consensus 676 ~~l~~Ki~~Le~Ele~er~~~~------e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI 749 (769)
T PF05911_consen 676 EELQSKISSLEEELEKERALSE------ELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETI 749 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhcch------hhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHh
Q 001118 786 LLLRQQIDSL 795 (1150)
Q Consensus 786 ~~l~qql~~~ 795 (1150)
++|-.||..+
T Consensus 750 ~sLGkQLksL 759 (769)
T PF05911_consen 750 ASLGKQLKSL 759 (769)
T ss_pred HHHHHHHHhc
No 307
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=37.22 E-value=34 Score=38.41 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=26.2
Q ss_pred eCCCCcchhHHHHHHHHHHHHhhc-C-CCeEEEEeccCCCCCceee
Q 001118 126 FGPATTTRHVYDVAAQHVVNGAMQ-G-INGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 126 F~~~atQeeVYe~vv~plV~~vL~-G-yN~tIfAYGQTGSGKTyTM 169 (1150)
|++...|++|-.. .+.+++.+.. | .-..++-||+.|.|||..-
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 3444568888764 4566776653 2 3346888999999998643
No 308
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=36.99 E-value=15 Score=45.43 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.7
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999764
No 309
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.98 E-value=1e+02 Score=33.05 Aligned_cols=65 Identities=23% Similarity=0.432 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 001118 656 TITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIG 725 (1150)
Q Consensus 656 ~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~ 725 (1150)
..+-.+..++++++.+..+....+..-+++ ..-++.+...|+++|++||+.++..+..|-.|+.+
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~-----~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKL-----LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666555555554444 22233445577888888888888888887777654
No 310
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.81 E-value=2e+02 Score=36.63 Aligned_cols=87 Identities=28% Similarity=0.472 Sum_probs=54.3
Q ss_pred HHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHH
Q 001118 914 ELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLE 993 (1150)
Q Consensus 914 Elk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e 993 (1150)
++++|-+-|++|--+|.-|..++...+.--- +----.+.+++++.....+..-++
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie-------------------------~L~~~l~~~~r~~~~~~~~~rei~ 477 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIE-------------------------KLESELERFRREVRDKVRKDREIR 477 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5677888888888888888887776652210 000011234444443333333333
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhh---HHH
Q 001118 994 AALSEREQVEGELRKRIDEAKRHEEDLENELAN---MWV 1029 (1150)
Q Consensus 994 ~~l~ek~~~e~e~~~~~~e~k~~e~~len~lan---mwv 1029 (1150)
.++.+=..|+++++|.+.+=.-||++|+- ||.
T Consensus 478 ----~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 478 ----ARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556678999999999999999988874 554
No 311
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=36.73 E-value=27 Score=44.66 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 132 TRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 132 QeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.-.||...-.....-+-.|.|-||+.-|-+|||||.|.-
T Consensus 72 ~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 110 (677)
T smart00242 72 PPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTK 110 (677)
T ss_pred CCCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHHH
Confidence 355775443333333347899999999999999999873
No 312
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=36.73 E-value=30 Score=38.81 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 139 AAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 139 vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+.+.++..+..|.+ |+-+|++|+|||...
T Consensus 10 l~~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 10 VTSRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 33445555556654 456899999999865
No 313
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=36.43 E-value=15 Score=43.96 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=43.7
Q ss_pred CeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchh--hccCCCCCCceEEEeCC
Q 001118 152 NGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVI--NDLLDPTGQNLRIREDA 229 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V--~DLL~p~~~~L~IrEd~ 229 (1150)
-..|+-||.+||||||++ +.+|+... .-.|++.++|-|.=.+ .-+|.... .-|.
T Consensus 30 PS~~~iyG~sgTGKT~~~--------------r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~~-----~~d~ 85 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLV--------------RQLLRKLN-----LENVWLNCVECFTYAILLEKILNKSQ-----LADK 85 (438)
T ss_pred ceeEEEeccCCCchhHHH--------------HHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHhc-----cCCC
Confidence 344689999999999986 45665441 2248888888885321 11121111 2234
Q ss_pred CCcEEeCcEEEEeCCHHHHHHHhhh
Q 001118 230 QGTYVEGIKEEVVLSPAHALSLIAT 254 (1150)
Q Consensus 230 ~Gv~V~GLsev~V~S~ee~l~lL~~ 254 (1150)
.|..++|. ..+..++..++..
T Consensus 86 dg~~~~~~----~en~~d~i~~l~q 106 (438)
T KOG2543|consen 86 DGDKVEGD----AENFSDFIYLLVQ 106 (438)
T ss_pred chhhhhhH----HHHHHHHHHHHHh
Confidence 45444442 4566777777765
No 314
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=36.36 E-value=78 Score=32.23 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 455 QLEAGQVKLQSRLEEEEQEKAALLGRIQ 482 (1150)
Q Consensus 455 qle~~~~~Lq~~Lee~ee~~~~L~~~i~ 482 (1150)
.|+.....+..+++++...+.-|-.+|+
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444444443
No 315
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=36.20 E-value=13 Score=36.53 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.5
Q ss_pred EEEeccCCCCCceeec
Q 001118 155 VFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~ 170 (1150)
++-||++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4679999999999764
No 316
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=36.00 E-value=1.2e+02 Score=36.71 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=54.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHh-h
Q 001118 697 QLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMK-I 775 (1150)
Q Consensus 697 ~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k-~ 775 (1150)
+++-|..|...||..-..-|+.||+.|.+.-.. +-+.||=.+..++=- -.|| --+|-|.. +
T Consensus 289 kL~~ql~k~leEi~~~e~~I~~le~airdK~~p-------LKVAqTRle~Rt~RP--nvEL---------CrD~AQ~~L~ 350 (421)
T KOG2685|consen 289 KLEWQLAKTLEEIADAENNIEALERAIRDKEGP-------LKVAQTRLENRTYRP--NVEL---------CRDQAQYRLV 350 (421)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhccccc-------HHHHHHHHHHcccCC--chHH---------HHhHHHHHHH
Confidence 578889999999999999999999999765443 334443333222100 0011 11222322 5
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q 001118 776 SENTEMQETILLLRQQIDSLS 796 (1150)
Q Consensus 776 ~e~~elqe~v~~l~qql~~~~ 796 (1150)
.|..+|+.+|..|+++|.+|=
T Consensus 351 ~EV~~l~~t~~~L~~kL~eA~ 371 (421)
T KOG2685|consen 351 DEVHELDDTVAALKEKLDEAE 371 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999998754
No 317
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=35.63 E-value=25 Score=38.32 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=21.4
Q ss_pred HHHHHhhcCC---CeEEEEeccCCCCCceee
Q 001118 142 HVVNGAMQGI---NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 142 plV~~vL~Gy---N~tIfAYGQTGSGKTyTM 169 (1150)
+-+|.++.|- ..+++.+|.+|||||+-.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 5567777543 677888999999998754
No 318
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.61 E-value=48 Score=35.56 Aligned_cols=46 Identities=35% Similarity=0.588 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhh
Q 001118 975 VEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLENEL 1024 (1150)
Q Consensus 975 ~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~l 1024 (1150)
+||+-.=||...||-+.||.-|.||+.+..|.||=-||+. ||--||
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~R----DLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELR----DLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 5788889999999999999999999999999999988875 555555
No 319
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=35.54 E-value=15 Score=47.13 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=29.5
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHH-HhhcCC----CeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVN-GAMQGI----NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~-~vL~Gy----N~tIfAYGQTGSGKTyTM 169 (1150)
.++||.|.+....-+.+.+.+..|+-. .++..+ .-.|+-||++|||||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 366777665444444444444333221 122222 246889999999999776
No 320
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=35.42 E-value=23 Score=43.91 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=28.0
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+||.+++.... ++.+...++.+....|+-||++|+|||+.-
T Consensus 62 ~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 467888775432 223333345566677888999999998753
No 321
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=35.29 E-value=34 Score=41.66 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=16.5
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
...|+-+|.+|+|||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4678889999999999974
No 322
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=35.20 E-value=1.5e+03 Score=31.96 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=46.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhh
Q 001118 698 LREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISE 777 (1150)
Q Consensus 698 i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e 777 (1150)
|+.+|..|..+|.+...+++.|++|+..-...-..-.+.-++-.+...+.+--- ++.+|+ +++.....+
T Consensus 747 l~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~------~~~~a~-----~~l~~a~~~ 815 (1353)
T TIGR02680 747 LDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAER------QAESAE-----RELARAARK 815 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH------HHHHHH-----HHHHHHHHH
Confidence 345555666666666666666665554433322222233455555555544321 344443 344445555
Q ss_pred hHHHHHHHHHHHHHHHHhhhc
Q 001118 778 NTEMQETILLLRQQIDSLSNK 798 (1150)
Q Consensus 778 ~~elqe~v~~l~qql~~~~~~ 798 (1150)
.......+...++++..+...
T Consensus 816 l~~a~~~~~~a~~~l~~aaa~ 836 (1353)
T TIGR02680 816 AAAAAAAWKQARRELERDAAD 836 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 556666666666666655543
No 323
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=35.08 E-value=28 Score=40.46 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=15.6
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
...|.-.|++|+|||.|+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3467778999999999985
No 324
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=34.89 E-value=1.1e+02 Score=28.58 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=29.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhh
Q 001118 860 SNLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEAS 902 (1150)
Q Consensus 860 ~~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~s 902 (1150)
+.|..+|+.-..-|.-|+.++.+|.++|..|...|..|.+|.-
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455666665668888888888888888888755555554433
No 325
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.87 E-value=23 Score=42.88 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=19.0
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.|..++.|.+ +++..+||||||.+.
T Consensus 19 ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 4556778987 466679999999764
No 326
>PF05729 NACHT: NACHT domain
Probab=34.82 E-value=16 Score=36.22 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.6
Q ss_pred EEEEeccCCCCCceeec
Q 001118 154 TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~ 170 (1150)
.++-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 47889999999999774
No 327
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=34.77 E-value=2.8e+02 Score=32.58 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCc-chHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSE-DSQLREHMQKLKDEISEKKLQIRVLEQRMIGSV 727 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~-~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~ 727 (1150)
...+|..|+.|+--+..+.+. +. +..++ +.+ |..++.+|...+.||+.+.++|.++.
T Consensus 212 ~~~~i~~L~~~l~~~~~~l~~-------l~---~~~~~~~P~----v~~l~~~i~~l~~~i~~e~~~i~~~~ 269 (362)
T TIGR01010 212 QLSLISTLEGELIRVQAQLAQ-------LR---SITPEQNPQ----VPSLQARIKSLRKQIDEQRNQLSGGL 269 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HH---hhCCCCCCc----hHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 456677777776666655542 22 12333 444 88899999999999999999998775
No 328
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=34.61 E-value=15 Score=37.68 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=15.0
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
+..+-||.+|+|||..|.
T Consensus 20 g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 566789999999998773
No 329
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.60 E-value=6.1e+02 Score=32.22 Aligned_cols=82 Identities=26% Similarity=0.265 Sum_probs=56.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhh-----------hhhhhhHHHH-----HhHHHHHHHhhHHHH
Q 001118 859 ESNLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKL-----------AEEASYAKEL-----ASSAAVELRNLAEEV 922 (1150)
Q Consensus 859 ~~~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl-----------~ee~syaK~L-----AsaaavElk~laeev 922 (1150)
...|+.+...-++|.+.++++...+.|.-.+-..+-+|- .+||+ |||= -.-.--|||.|--|+
T Consensus 45 K~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESa-akE~~yl~kI~eleneLKq~r~el 123 (772)
T KOG0999|consen 45 KEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESA-AKEEYYLQKILELENELKQLRQEL 123 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555567888888888888888777776666653 33332 3321 123456999999999
Q ss_pred HHhhhhhhhhhhHHHHHHh
Q 001118 923 TRLSYENAKLNSELAAAKE 941 (1150)
Q Consensus 923 tkl~~qN~kl~~el~~~~~ 941 (1150)
|.--.+|++|.+.-.-.++
T Consensus 124 ~~~q~E~erl~~~~sd~~e 142 (772)
T KOG0999|consen 124 TNVQEENERLEKVHSDLKE 142 (772)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999887655543
No 330
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=34.50 E-value=2.1e+02 Score=31.82 Aligned_cols=107 Identities=25% Similarity=0.275 Sum_probs=80.4
Q ss_pred hhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchh
Q 001118 677 LCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFE 756 (1150)
Q Consensus 677 ~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~fe 756 (1150)
.-..+|.-|-+-...+-...+.+..|...-.+|+..+.+|..|... .........+.+..++.|.+.....+|.+
T Consensus 22 ~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~-~~~~~~~~~~~s~~eLeq~l~~~~~~L~~---- 96 (240)
T PF12795_consen 22 DLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ-DAPSKEILANLSLEELEQRLSQEQAQLQE---- 96 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc-ccccccCcccCCHHHHHHHHHHHHHHHHH----
Confidence 4455666666666666666677777777778888888888777555 44455556677778999999999888883
Q ss_pred hhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhc
Q 001118 757 LEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLSNK 798 (1150)
Q Consensus 757 leik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~ 798 (1150)
+|.+|+.-.+...+++.-...+.++++.+...
T Consensus 97 ----------~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~ 128 (240)
T PF12795_consen 97 ----------LQEQLQQENSQLIEIQTRPERAQQQLSEARQR 128 (240)
T ss_pred ----------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 78999999999999888888888888776543
No 331
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=34.32 E-value=20 Score=45.31 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=19.3
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+|..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455677876 688889999999874
No 332
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.29 E-value=33 Score=40.82 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=32.0
Q ss_pred HHHHHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCCCceEEEEEe
Q 001118 141 QHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFLLRVS 203 (1150)
Q Consensus 141 ~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~~~~f~V~VS 203 (1150)
..+|..+|+|-+| +....||||||..+-++ +|+.+.+.+...|.+-++
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFaLP-------------il~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFALP-------------ILNRLSEDPYGIFALVLT 82 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhhHH-------------HHHhhccCCCcceEEEec
Confidence 3567788999987 45679999999887542 455555555555544433
No 333
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=34.28 E-value=14 Score=42.09 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.9
Q ss_pred cCCCeEEEEeccCCCCCcee
Q 001118 149 QGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyT 168 (1150)
.|++-+||..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 48899999999999999864
No 334
>PTZ00121 MAEBL; Provisional
Probab=34.18 E-value=2.5e+02 Score=39.10 Aligned_cols=34 Identities=35% Similarity=0.353 Sum_probs=22.4
Q ss_pred HHHHHhHHHHHHH----hhHHHHHHhhhhhhhhhhHHH
Q 001118 904 AKELASSAAVELR----NLAEEVTRLSYENAKLNSELA 937 (1150)
Q Consensus 904 aK~LAsaaavElk----~laeevtkl~~qN~kl~~el~ 937 (1150)
+|-+|-+-|-||| +|-|||-||-.+-.+.-+|-+
T Consensus 1575 ~k~~a~rkaee~~~~~~~~~~~~~~~~~~~~~~kae~~ 1612 (2084)
T PTZ00121 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612 (2084)
T ss_pred hhhhhhhhHHHHHhHHhhhhhhhhhhhhhhhHHHHHHH
Confidence 3556666666765 466788888777666655543
No 335
>PRK04328 hypothetical protein; Provisional
Probab=34.10 E-value=27 Score=38.84 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=21.2
Q ss_pred HHHHHhhcC---CCeEEEEeccCCCCCce
Q 001118 142 HVVNGAMQG---INGTVFAYGVTSSGKTH 167 (1150)
Q Consensus 142 plV~~vL~G---yN~tIfAYGQTGSGKTy 167 (1150)
+-+|.++.| ...+++-+|.+|||||.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 457788876 47888999999999975
No 336
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=34.03 E-value=23 Score=45.73 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=17.7
Q ss_pred cCCCeEEEEeccCCCCCceeec
Q 001118 149 QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|.-..++-||++|+|||++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4445578889999999998874
No 337
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=33.92 E-value=6.5e+02 Score=29.48 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhhHhhhhchHHHH
Q 001118 659 DQMDLLHEQMKMLAGEVALCTSSLKRL 685 (1150)
Q Consensus 659 d~idlLrEQ~KmL~gEva~~~s~Lkrl 685 (1150)
.++..++.|++.+.-++...+..++|.
T Consensus 158 ~~i~~~~~~l~~~~~~l~~~~~~~~~~ 184 (423)
T TIGR01843 158 AELAGLQAQLQALRQQLEVISEELEAR 184 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554
No 338
>PLN02943 aminoacyl-tRNA ligase
Probab=33.70 E-value=1.3e+02 Score=40.24 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=43.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 408 MDEKSLIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKAALLGRIQRLTKL 487 (1150)
Q Consensus 408 ~d~~~li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~Lee~ee~~~~L~~~i~~L~k~ 487 (1150)
+|.++.+.++.+++..|+.+++.+++.+....-......+-++. -+.++++.+++.+.+.+.+..|...
T Consensus 885 iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~-----------e~~kl~~~~~~l~~~~~~l~~l~~~ 953 (958)
T PLN02943 885 VDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRG-----------VREKAAEAEEKIKLTKNRLAFLKST 953 (958)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566778899999999999999887765433222223222211 1123445556666677777777665
Q ss_pred HHhc
Q 001118 488 ILVS 491 (1150)
Q Consensus 488 il~s 491 (1150)
++.|
T Consensus 954 ~~~~ 957 (958)
T PLN02943 954 SLVS 957 (958)
T ss_pred cccc
Confidence 5544
No 339
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=33.67 E-value=23 Score=45.00 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=18.5
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
|..++..- ..++.+|++|||||||+.
T Consensus 166 v~~~l~~~-~~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 166 VSFALSSK-DLFLIHGPPGTGKTRTLV 191 (637)
T ss_pred HHHHhcCC-CeEEEEcCCCCCHHHHHH
Confidence 44444322 346689999999999986
No 340
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=33.56 E-value=21 Score=40.49 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=19.2
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+++..+.. +--++-+|++|+|||.++.
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 44444433 5567899999999997764
No 341
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=33.47 E-value=9.4e+02 Score=32.74 Aligned_cols=249 Identities=18% Similarity=0.177 Sum_probs=0.0
Q ss_pred cccchhhhhccch----hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhccCCCCccccccCCCCCCCCchhhhhhhh
Q 001118 751 NEKTFELEIKSAD----NRILQEQLQMKISENTEMQETILLLRQQIDSLSNKMSGSPEQMAENDGIPLKPCSEEISQQKN 826 (1150)
Q Consensus 751 nek~feleik~ad----nrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1150)
+++.-.|+|--|| ||-|+.+|..|..-+.+|.+++..|+-.++.+=... +.+.-.++
T Consensus 169 ~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~-------------------~e~l~ea~ 229 (1195)
T KOG4643|consen 169 VKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEI-------------------EEFLDEAH 229 (1195)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHH
Q ss_pred ccccCCCCCccccccCCCCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhh-----
Q 001118 827 AWRNGLGSCEETFVDEHTPTSVMSLNRIFSHEESNLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEA----- 901 (1150)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~----- 901 (1150)
-....+|-..++.-++.-++ .+....--+.+--+ .-.|+||+...-|.|+|..|+.|-|||---+
T Consensus 230 ra~~yrdeldalre~aer~d-----~~ykerlmDs~fyk-----dRveelkedN~vLleekeMLeeQLq~lrarse~~tl 299 (1195)
T KOG4643|consen 230 RADRYRDELDALREQAERPD-----TTYKERLMDSDFYK-----DRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATL 299 (1195)
T ss_pred hhhhhhhHHHHHHHhhhcCC-----CccchhhhhhHHHH-----HHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCCh
Q ss_pred -----hhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhccccc-------ccCCCcccccccCCccccccc
Q 001118 902 -----SYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNF-------CQRSAPYEFKQSNSNGARRKT 969 (1150)
Q Consensus 902 -----syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~ 969 (1150)
.|-+.|+ -.+-|.--+--...+|+.+|..|...-++.-....+-.+ + ...-++.++--+..+--
T Consensus 300 eseiiqlkqkl~-dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~e---n~Sl~~e~eqLts~ral 375 (1195)
T KOG4643|consen 300 ESEIIQLKQKLD-DMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELE---NESLQVENEQLTSDRAL 375 (1195)
T ss_pred HHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhh---hhhHHHHHHHhhhHHHH
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Q 001118 970 EDGLLVEELQKELSSRYQREADLEAALSEREQVEG----------ELRKRIDEAKRHEEDLENELANMWVLIAKM 1034 (1150)
Q Consensus 970 ~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~----------e~~~~~~e~k~~e~~len~lanmwvlvakl 1034 (1150)
..-+--..+-..|..++.+ .||...+.-=-++. .|..+|-+.+|+-+.||+.--+.-+=.+||
T Consensus 376 kllLEnrrlt~tleelqss--s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 376 KLLLENRRLTGTLEELQSS--SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKL 448 (1195)
T ss_pred HHHHHhHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 342
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.44 E-value=1.6e+02 Score=32.10 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=38.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhc
Q 001118 697 QLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLN 751 (1150)
Q Consensus 697 ~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qln 751 (1150)
+++..+.+|+.+|...+..|..|+.+|...-..-........+...+.+|..++.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~ 120 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELK 120 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 4566788899999999999999999988886554444444455555555555444
No 343
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=33.37 E-value=30 Score=44.12 Aligned_cols=40 Identities=15% Similarity=0.037 Sum_probs=25.8
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 127 GPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 127 ~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+...|..++..+ ..+.-.++..-++..|+||||||.+..
T Consensus 261 ~lt~~Q~~ai~~I----~~d~~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 261 ELTGAQKRVVAEI----LADLASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred CCCHHHHHHHHHH----HHhhhccCCceEEEECCCCCcHHHHHH
Confidence 3445565555433 333334555678999999999998654
No 344
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.18 E-value=19 Score=42.37 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.3
Q ss_pred CeEEEEeccCCCCCcee
Q 001118 152 NGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyT 168 (1150)
-+.|+..|+||||||+.
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 35688999999999974
No 345
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=33.12 E-value=39 Score=43.36 Aligned_cols=37 Identities=32% Similarity=0.536 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceeec
Q 001118 133 RHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 133 eeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.||... ......++ .|.|-||+.-|.+|||||.|.-
T Consensus 73 PHifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 110 (677)
T cd01383 73 PHVYAIA-DTAYNEMMRDEVNQSIIISGESGAGKTETAK 110 (677)
T ss_pred CCHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcchHHH
Confidence 4577533 34444444 6999999999999999999873
No 346
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.01 E-value=21 Score=41.19 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.1
Q ss_pred HhhcCCCeEEEEeccCCCCCceee
Q 001118 146 GAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 146 ~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
++-+||.-.|+|.|-||.|||..|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 455899999999999999998765
No 347
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=32.96 E-value=37 Score=43.49 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHh-hcCCCeEEEEeccCCCCCceeec
Q 001118 133 RHVYDVAAQHVVNGA-MQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 133 eeVYe~vv~plV~~v-L~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.||... ......+ -.|.|-||+.-|.+|||||.|.-
T Consensus 69 PHifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 106 (674)
T cd01384 69 PHVFAIA-DAAYRAMINEGKSQSILVSGESGAGKTETTK 106 (674)
T ss_pred CCHHHHH-HHHHHHHHHcCCCceEEEECCCCCCchhHHH
Confidence 4567533 3333333 36899999999999999999873
No 348
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=32.83 E-value=17 Score=40.36 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.4
Q ss_pred CeEEEEeccCCCCCceeecCC
Q 001118 152 NGTVFAYGVTSSGKTHTMHGE 172 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~G~ 172 (1150)
...++-||..|+|||++.-+-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 456999999999999987543
No 349
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=32.82 E-value=29 Score=37.36 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=22.2
Q ss_pred HHHHHhhcC---CCeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQG---INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~G---yN~tIfAYGQTGSGKTyTM~ 170 (1150)
+-+|.++.| ....+.-||++|||||.-+.
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCH 37 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHH
Confidence 456777775 35677889999999997653
No 350
>PRK10865 protein disaggregation chaperone; Provisional
Probab=32.75 E-value=25 Score=46.16 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=15.0
Q ss_pred eEEEEeccCCCCCceee
Q 001118 153 GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM 169 (1150)
+.++-+|+||+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57888899999999976
No 351
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.69 E-value=62 Score=39.20 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=28.4
Q ss_pred eeeeeeCCCCcchhHHHHHHHHH-HHHhhcCCCe---EEEEeccCCCCCc
Q 001118 121 GFDKVFGPATTTRHVYDVAAQHV-VNGAMQGING---TVFAYGVTSSGKT 166 (1150)
Q Consensus 121 ~FD~VF~~~atQeeVYe~vv~pl-V~~vL~GyN~---tIfAYGQTGSGKT 166 (1150)
.+|-|-+-..--+-+-+.++-|+ +..+|.|.-- .|+.+|+.|||||
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKT 259 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHH
Confidence 34444443333333445556664 4567788753 5888999999997
No 352
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=32.68 E-value=33 Score=36.96 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=22.2
Q ss_pred HHHHHhhcCC---CeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGI---NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~Gy---N~tIfAYGQTGSGKTyTM~ 170 (1150)
+-+|.++.|- ...+.-||.+|||||....
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 5577788543 4567899999999998764
No 353
>PRK14974 cell division protein FtsY; Provisional
Probab=32.59 E-value=42 Score=39.47 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.7
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
...|+-.|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4678899999999999985
No 354
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=32.55 E-value=37 Score=43.62 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceeec
Q 001118 133 RHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 133 eeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.||.. +......++ .|.|-||+.-|.+|||||.|.-
T Consensus 75 PHiy~i-A~~Ay~~m~~~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 75 PHIFAI-ADVAYYNMLRKKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 457753 333334433 6899999999999999999873
No 355
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.41 E-value=1.5e+03 Score=31.30 Aligned_cols=45 Identities=31% Similarity=0.451 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh-hhhhhhhhHHHHH
Q 001118 987 QREADLEAALSEREQVEGELRKRIDEAKRHEE-DLENELANMWVLI 1031 (1150)
Q Consensus 987 ~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~-~len~lanmwvlv 1031 (1150)
++-.-++..+....+...++++.++..+.-=. +=-++|+..|-=.
T Consensus 899 ~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l~~~~~~~~~~~~~~~ 944 (1201)
T PF12128_consen 899 ERLRDLEDLLQRRKRLREELKKAVERFKGVLTKHSGSELAENWEEL 944 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 33445667777777888888888887764321 1236788888654
No 356
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=32.20 E-value=29 Score=40.05 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.3
Q ss_pred hhcCCCeEEEEeccCCCCCceeec
Q 001118 147 AMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 147 vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-..+-+.-++-||+.|||||.+|.
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHH
Confidence 345667889999999999999986
No 357
>KOG2418 consensus Microtubule-associated protein TAU [Cytoskeleton]
Probab=32.05 E-value=1.6e+02 Score=35.22 Aligned_cols=7 Identities=43% Similarity=0.600 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 001118 12 ISPFRSR 18 (1150)
Q Consensus 12 ~sp~rsr 18 (1150)
.+|.|+.
T Consensus 205 r~pir~p 211 (448)
T KOG2418|consen 205 RSPIRPP 211 (448)
T ss_pred cCCccCc
Confidence 3444444
No 358
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=31.94 E-value=41 Score=43.11 Aligned_cols=37 Identities=16% Similarity=0.376 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceeec
Q 001118 133 RHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 133 eeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.||.. +......++ .|.|-||+.-|.+|||||.|.-
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 104 (671)
T cd01381 67 PHIFAI-SDNAYTNMQREKKNQCIIISGESGAGKTESTK 104 (671)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCeehHHH
Confidence 456653 333344433 6899999999999999999873
No 359
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.74 E-value=29 Score=42.52 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=26.0
Q ss_pred eeeeeeCCCCcchhHHHHHHHHHHHHhhcCC-CeEEEEeccCCCCCceeec
Q 001118 121 GFDKVFGPATTTRHVYDVAAQHVVNGAMQGI-NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 121 ~FD~VF~~~atQeeVYe~vv~plV~~vL~Gy-N~tIfAYGQTGSGKTyTM~ 170 (1150)
+||.|++. +.+ ...+...+-.|. ...++-||+.|+|||++..
T Consensus 12 ~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 12 TFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred CHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 56777663 333 222333333443 3458899999999998863
No 360
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.72 E-value=4.8e+02 Score=30.69 Aligned_cols=111 Identities=25% Similarity=0.295 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccc
Q 001118 658 TDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTT 737 (1150)
Q Consensus 658 ~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~ 737 (1150)
-.+++.|++--+.|...+.+-++.+-.|.+- -..|+.|+...++.-..+ ..-|..
T Consensus 150 ~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~-------------~~~L~~e~~~L~~~~~e~------------~~~d~~ 204 (312)
T smart00787 150 DENLEGLKEDYKLLMKELELLNSIKPKLRDR-------------KDALEEELRQLKQLEDEL------------EDCDPT 204 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhHHHH------------HhCCHH
Confidence 3566777777777777666666554443321 223333333222211111 112334
Q ss_pred hhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 001118 738 EMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLSN 797 (1150)
Q Consensus 738 e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 797 (1150)
++-+.-.+|..++. ++++|..+=..+|+||+.....+++..++...++.+++++-.
T Consensus 205 eL~~lk~~l~~~~~----ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQ----EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666654 567777777788888888888888888888888888877543
No 361
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=31.71 E-value=39 Score=43.22 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceeec
Q 001118 133 RHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 133 eeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.||. ++......++ .|.|-||+.-|.+|||||.+.-
T Consensus 67 PHifa-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 104 (679)
T cd00124 67 PHVFA-IADRAYRNMLRDRRNQSIIISGESGAGKTENTK 104 (679)
T ss_pred CCHHH-HHHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 45775 3444444444 6899999999999999999873
No 362
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.69 E-value=57 Score=42.34 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=13.6
Q ss_pred eEEEEeccCCCCCce
Q 001118 153 GTVFAYGVTSSGKTH 167 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTy 167 (1150)
+.|+-||+.|+|||-
T Consensus 706 SGILLYGPPGTGKTL 720 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTL 720 (953)
T ss_pred ceeEEECCCCCchHH
Confidence 679999999999994
No 363
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.49 E-value=2.8e+02 Score=34.96 Aligned_cols=60 Identities=33% Similarity=0.393 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhh
Q 001118 870 AAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEAL 943 (1150)
Q Consensus 870 ~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~ 943 (1150)
..+.+.|++++.+|+++ .++.+.+|-=|+-++.+| -||---|-.|=+.|.+|+..+|.--
T Consensus 7 eq~ve~lr~eierLT~e-----------l~q~t~e~~qaAeyGL~l---LeeK~~Lkqq~eEleaeyd~~R~El 66 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEE-----------LEQTTEEKIQAAEYGLEL---LEEKEDLKQQLEELEAEYDLARTEL 66 (772)
T ss_pred hhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999987 457788888888888775 4677778899999999999888543
No 364
>PRK00131 aroK shikimate kinase; Reviewed
Probab=31.43 E-value=22 Score=35.97 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.7
Q ss_pred eEEEEeccCCCCCceee
Q 001118 153 GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM 169 (1150)
-.|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 37899999999999874
No 365
>PRK05580 primosome assembly protein PriA; Validated
Probab=31.35 E-value=22 Score=45.32 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=23.6
Q ss_pred eCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 126 FGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 126 F~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+.....|..+++.+.. .. ++ ..++.+|+||||||.+.+
T Consensus 143 ~~Lt~~Q~~ai~~i~~----~~--~~-~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 143 PTLNPEQAAAVEAIRA----AA--GF-SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCCCHHHHHHHHHHHh----cc--CC-CcEEEECCCCChHHHHHH
Confidence 3444556655554332 21 23 458899999999997753
No 366
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=31.09 E-value=21 Score=40.57 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=18.9
Q ss_pred cCCCeEEEEeccCCCCCceee
Q 001118 149 QGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999765
No 367
>CHL00176 ftsH cell division protein; Validated
Probab=30.97 E-value=17 Score=46.18 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.3
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+-||++|+|||+..-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999998863
No 368
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=30.95 E-value=40 Score=43.37 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceeec
Q 001118 132 TRHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 132 QeeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.-.||.. +......++ .|.|-||+.-|-+|||||.|.-
T Consensus 71 ~PHiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~K 109 (693)
T cd01377 71 PPHIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENTK 109 (693)
T ss_pred CCCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 3457753 334444443 6999999999999999999863
No 369
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.88 E-value=19 Score=43.46 Aligned_cols=18 Identities=44% Similarity=0.530 Sum_probs=15.2
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+-.|+||+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 366777999999999986
No 370
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=30.84 E-value=33 Score=43.41 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=30.0
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+||.+++ |...... ++..+..++...|+-||++|+|||+..
T Consensus 151 ~~~~~iiG----qs~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVG----QERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhcee----CcHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 46777775 3344433 445556678888999999999999876
No 371
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=30.82 E-value=37 Score=40.79 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=15.7
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
.-++.+|+||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 568899999999999873
No 372
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=30.77 E-value=27 Score=43.68 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=19.0
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
|..+++|.| |++.++||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 455788988 566789999999775
No 373
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=30.76 E-value=43 Score=42.89 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceeec
Q 001118 133 RHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 133 eeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.||..+ ......++ .|.|-||+.-|-+|||||.|.-
T Consensus 67 PHifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 104 (674)
T cd01378 67 PHIYALA-DNAYRSMKSENENQCVIISGESGAGKTEAAK 104 (674)
T ss_pred CCHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCcchHHH
Confidence 4577533 33334433 6899999999999999999873
No 374
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=30.76 E-value=31 Score=39.60 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=21.1
Q ss_pred HHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 141 QHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 141 ~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+++..++.+. ..|+-.|.||||||..|.
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 45666666554 466677999999999763
No 375
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=30.71 E-value=44 Score=36.52 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHhhc-CCCeEEEEeccCCCCCceee
Q 001118 134 HVYDVAAQHVVNGAMQ-GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 134 eVYe~vv~plV~~vL~-GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+|..++.-+...+-. +..-.|.-.|.+|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 3455444444333333 44556666899999999866
No 376
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=30.69 E-value=27 Score=41.09 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=14.0
Q ss_pred EEEeccCCCCCceeec
Q 001118 155 VFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~ 170 (1150)
++.+|.||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999874
No 377
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=30.69 E-value=42 Score=43.03 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceeec
Q 001118 133 RHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 133 eeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.||.. +......++ .|.|-||+.-|-+|||||.|.-
T Consensus 68 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 105 (677)
T cd01387 68 PHLFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEATK 105 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHHH
Confidence 457754 333344443 7999999999999999999973
No 378
>PRK10869 recombination and repair protein; Provisional
Probab=30.47 E-value=5e+02 Score=32.76 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhhccchhhhhhhhhhhhh-----hHHHHHhHHHHHHHhhH
Q 001118 872 EIENLKQERVKLVEERDGLEIHSQKLAEEAS-----YAKELASSAAVELRNLA 919 (1150)
Q Consensus 872 eie~lk~~~~~l~e~k~~l~~~nqkl~ee~s-----yaK~LAsaaavElk~la 919 (1150)
++++......+|.++...+..+-.+++++-| +|+.|+.+.--+|+.|.
T Consensus 335 ~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~ 387 (553)
T PRK10869 335 QLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELS 387 (553)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444455555555555555555554443 56666665555555543
No 379
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=30.33 E-value=32 Score=40.40 Aligned_cols=43 Identities=16% Similarity=0.361 Sum_probs=30.1
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
|.|..|.+ |+++ ..-++-.+++..-+-|+-.|.+|+|||..+-
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 44555554 4333 3456666777777788999999999998773
No 380
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=30.29 E-value=44 Score=39.77 Aligned_cols=28 Identities=39% Similarity=0.477 Sum_probs=20.9
Q ss_pred HHHHHhhcCCC---eEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGIN---GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~GyN---~tIfAYGQTGSGKTyTM~ 170 (1150)
|+++..+.|.- -|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 56677777753 45654 999999998775
No 381
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.25 E-value=1.5e+02 Score=36.01 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=48.9
Q ss_pred CchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCC-cchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcc
Q 001118 655 TTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNS-EDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPH 732 (1150)
Q Consensus 655 ~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p-~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~ 732 (1150)
.+..-++|.||.+.|-++-+++- +.++. +-+.+..+++.|+++|++...++..+|.++..-+..-|+
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~-----------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN 105 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQ-----------AKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPN 105 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34566778888888888866653 11222 345678899999999999999999999988876666554
No 382
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=30.14 E-value=24 Score=41.29 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=13.4
Q ss_pred EEEeccCCCCCceeec
Q 001118 155 VFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~ 170 (1150)
...||+|||||++-+-
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4569999999999764
No 383
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=30.14 E-value=41 Score=43.40 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHh-hcCCCeEEEEeccCCCCCceee
Q 001118 133 RHVYDVAAQHVVNGA-MQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 133 eeVYe~vv~plV~~v-L~GyN~tIfAYGQTGSGKTyTM 169 (1150)
-.||.. +......+ -.|.|-||+.-|.+|||||.|.
T Consensus 72 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 72 PHVFAI-ADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred CcHHHH-HHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 346753 33334444 3789999999999999999986
No 384
>PRK06851 hypothetical protein; Provisional
Probab=30.12 E-value=34 Score=40.78 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=30.0
Q ss_pred eeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 124 KVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 124 ~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
++|....|-..+| .+.+.++.|.+-.++-.|.+|+|||++|-
T Consensus 7 ~~f~ggnT~~Gf~-----s~~~~~~~~~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 7 HYFAGGNTARGFY-----SLYDSIIDGANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred eeecCCCCCCchh-----hhhhhhccccceEEEEECCCCCCHHHHHH
Confidence 3454444444454 34556677888889999999999999884
No 385
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=30.11 E-value=22 Score=36.73 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=12.9
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998753
No 386
>CHL00181 cbbX CbbX; Provisional
Probab=30.03 E-value=47 Score=38.03 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=13.3
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999875
No 387
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=29.97 E-value=26 Score=43.25 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=31.7
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.|.||.+++....-..+++.+. . +...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~-----~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQAR-----V-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHHHH-----H-HhCcCCCEEEECCCCccHHHHH
Confidence 4789999987655444544332 2 2356788999999999998654
No 388
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.92 E-value=1.6e+03 Score=30.57 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 001118 767 LQEQLQMKISENTEMQETILLLRQQIDSLS 796 (1150)
Q Consensus 767 lqeql~~k~~e~~elqe~v~~l~qql~~~~ 796 (1150)
||-+|+.--.|-.++|+.-..+++.+++.-
T Consensus 281 Lqrel~raR~e~keaqe~ke~~k~emad~a 310 (1243)
T KOG0971|consen 281 LQRELKRARKEAKEAQEAKERYKEEMADTA 310 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888887644
No 389
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=29.91 E-value=37 Score=36.32 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=21.6
Q ss_pred HHHHHhhc-CC--CeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQ-GI--NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~-Gy--N~tIfAYGQTGSGKTyTM~ 170 (1150)
+-+|.++. |+ ...+..+|.+|||||....
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 45677775 44 3457899999999998754
No 390
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=29.50 E-value=23 Score=35.57 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=12.7
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
|+-.|.+|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998764
No 391
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=29.35 E-value=2.4e+02 Score=34.53 Aligned_cols=71 Identities=28% Similarity=0.289 Sum_probs=44.9
Q ss_pred ccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 399 EIKASQNKIMDEKSLIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKAALL 478 (1150)
Q Consensus 399 knk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~Lee~ee~~~~L~ 478 (1150)
..++++......+..++.|+.+|..|..-++.++. +-.....+|.+.|+++...+..|+
T Consensus 556 e~k~k~e~~~~~k~s~delr~qi~el~~ive~lk~---------------------~~~kel~kl~~dleeek~mr~~le 614 (627)
T KOG4348|consen 556 EIKAKVETDDVKKNSLDELRAQIIELLCIVEALKK---------------------DHGKELEKLRKDLEEEKTMRSNLE 614 (627)
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44555554333345567777777777766666543 222223456667777777778888
Q ss_pred HHHHHHHHHHHh
Q 001118 479 GRIQRLTKLILV 490 (1150)
Q Consensus 479 ~~i~~L~k~il~ 490 (1150)
-+|+.|++.++.
T Consensus 615 mei~~lkka~~s 626 (627)
T KOG4348|consen 615 MEIEKLKKAVLS 626 (627)
T ss_pred hhHHHHHHHhhc
Confidence 888888887764
No 392
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.30 E-value=39 Score=39.74 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=26.1
Q ss_pred eeeeeeCCCCcchhHHHHHHHHHHHHhhcC-CCeEEEEeccCCCCCceeec
Q 001118 121 GFDKVFGPATTTRHVYDVAAQHVVNGAMQG-INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 121 ~FD~VF~~~atQeeVYe~vv~plV~~vL~G-yN~tIfAYGQTGSGKTyTM~ 170 (1150)
+||.|.| |+.+-. .+...+-.| ..-+++-||+.|+|||++..
T Consensus 14 ~~~~iiG----q~~~~~----~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 14 YFRDIIG----QKHIVT----AISNGLSLGRIHHAWLLSGTRGVGKTTIAR 56 (363)
T ss_pred chhhccC----hHHHHH----HHHHHHHcCCCCeEEEEecCCCCCHHHHHH
Confidence 4666654 444433 233333343 45678999999999998763
No 393
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.14 E-value=3.6e+02 Score=32.37 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=63.8
Q ss_pred CchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcccc
Q 001118 655 TTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTL 734 (1150)
Q Consensus 655 ~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~ 734 (1150)
...++||..++..|+-.-.++ +.++++|-.+|..--..|..-|+.|-..++.
T Consensus 219 R~hleqm~~~~~~I~~~~~~~-----------------------~~~L~kl~~~i~~~lekI~sREk~iN~qle~----- 270 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPET-----------------------KSQLDKLQQDISKTLEKIESREKYINNQLEP----- 270 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----
Confidence 356788888887776555433 3568888888888888999999988776554
Q ss_pred ccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001118 735 STTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDS 794 (1150)
Q Consensus 735 ~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 794 (1150)
+.|-|..+..+|++ ++..- +.+++-....+.+..++.|++...||++.+
T Consensus 271 ----l~~eYr~~~~~ls~------~~~~y-~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 271 ----LIQEYRSAQDELSE------VQEKY-KQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred ----HHHHHHHHHHHHHH------HHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666652 21111 123444555566666666666666666543
No 394
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.98 E-value=6.6e+02 Score=25.89 Aligned_cols=89 Identities=28% Similarity=0.428 Sum_probs=0.0
Q ss_pred HhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHH
Q 001118 916 RNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAA 995 (1150)
Q Consensus 916 k~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~ 995 (1150)
.+|++++-+|.+.|++|...+...+... +++++|+.....++.+|+..
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~--------------------------------~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQL--------------------------------EELERELASAEEKERQLQKQ 102 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhH----HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhh
Q 001118 996 LSEREQV----EGELRKRIDEAKRHEEDLENELANMWVLIAKMRN 1036 (1150)
Q Consensus 996 l~ek~~~----e~e~~~~~~e~k~~e~~len~lanmwvlvaklk~ 1036 (1150)
+..-... ..|++|-.--..++....++|+.-.=.=+.+||.
T Consensus 103 ~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 103 LKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 395
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=28.88 E-value=38 Score=41.77 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=18.9
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+..++.|.| +++..+||||||.+.
T Consensus 151 aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHHH
Confidence 3455678876 567779999999764
No 396
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=28.88 E-value=63 Score=41.49 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=33.5
Q ss_pred CcccCCCchhhhhhcccCCCCc-----cce----eEEeeCCCCCCHHHHHHHHHHHhHccccccc
Q 001118 346 THIPYRDSKLTRLLQSSLSGHG-----RIS----LICTVTPASSNSEETHNTLKFAHRSKHVEIK 401 (1150)
Q Consensus 346 ~hIPYRDSKLTrLLqDSLGGNs-----kT~----mIatISPs~~~~eETLsTLrFA~RAK~Iknk 401 (1150)
.+-||-...|-.++...|.|-. -+= =||.||- ++-..|.++.||..|.-+
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG------DaRraldic~RA~Eia~~ 630 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG------DARRALDICRRAAEIAEE 630 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhhh
Confidence 5778988889999888888751 000 2344443 456778888888776544
No 397
>PF13173 AAA_14: AAA domain
Probab=28.79 E-value=23 Score=35.07 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=15.4
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
-.++-+|+.|+|||+.|.
T Consensus 3 ~~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLK 20 (128)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357889999999999885
No 398
>PHA02624 large T antigen; Provisional
Probab=28.71 E-value=44 Score=42.42 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=22.9
Q ss_pred HHHHHhhcCCCe--EEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGING--TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~GyN~--tIfAYGQTGSGKTyTM~ 170 (1150)
.++..++.|... ||+-||+.|||||+-..
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~ 449 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAA 449 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHH
Confidence 346667788766 99999999999997543
No 399
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=28.65 E-value=47 Score=42.75 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceeec
Q 001118 133 RHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 133 eeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.||... ......++ .|.|-||+.-|-+|||||.+.-
T Consensus 67 PHifaiA-~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K 104 (691)
T cd01380 67 PHIFAIA-EEAYKQMTRDEKNQSIIVSGESGAGKTVSAK 104 (691)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 3467433 33333333 7999999999999999999873
No 400
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.51 E-value=63 Score=37.40 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=17.9
Q ss_pred HHHhHHHHHHHHHHHhhhhhhhhhh
Q 001118 998 EREQVEGELRKRIDEAKRHEEDLEN 1022 (1150)
Q Consensus 998 ek~~~e~e~~~~~~e~k~~e~~len 1022 (1150)
|-..+|+||+||-+|-|+||..+-|
T Consensus 68 eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 68 ELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 3345678888888888888776544
No 401
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=28.48 E-value=1.3e+03 Score=29.10 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=16.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhhhccCCCCccc
Q 001118 770 QLQMKISENTEMQETILLLRQQIDSLSNKMSGSPEQM 806 (1150)
Q Consensus 770 ql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~ 806 (1150)
.++.=...+.+....+..+...|...++.-++.|+.+
T Consensus 267 ~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L 303 (563)
T TIGR00634 267 SLRELAEQVGNALTEVEEATRELQNYLDELEFDPERL 303 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 3333333444444444445555555444444445333
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.46 E-value=43 Score=40.70 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=16.1
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578889999999999985
No 403
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.33 E-value=6.9e+02 Score=29.25 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=27.1
Q ss_pred hhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 001118 757 LEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLS 796 (1150)
Q Consensus 757 leik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~ 796 (1150)
++-|-++=--+|.||+.+..+++++.+.+..|+.++.++=
T Consensus 225 i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 225 IEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445777777777777777777777777776643
No 404
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=28.25 E-value=21 Score=42.62 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=15.2
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
+--++.+|.||||||..|.
T Consensus 42 ~~h~~i~g~tGsGKt~~i~ 60 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIR 60 (410)
T ss_pred hccEEEEcCCCCCHHHHHH
Confidence 3467899999999997653
No 405
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=28.19 E-value=2.1e+02 Score=31.44 Aligned_cols=85 Identities=24% Similarity=0.309 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccC-------CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 001118 409 DEKSLIKKYQKEITFLKQELQQLKRGMMDNPHMAA-------SSQDDLVNLKLQLE----AGQVKLQSRLEEEEQEKAAL 477 (1150)
Q Consensus 409 d~~~li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~-------~~~~e~~~lk~qle----~~~~~Lq~~Lee~ee~~~~L 477 (1150)
+...+|..+..||..|+.+|...+........... ...+.+..++.-.+ ....+|+.+|...+.....-
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~ 137 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEK 137 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888776543221110000 11122222222111 12356777777777777777
Q ss_pred HHHHHHHHHHHHhccc
Q 001118 478 LGRIQRLTKLILVSTK 493 (1150)
Q Consensus 478 ~~~i~~L~k~il~s~~ 493 (1150)
..+|+.|.+.+-..++
T Consensus 138 ~~ki~~Lek~leL~~k 153 (194)
T PF15619_consen 138 EKKIQELEKQLELENK 153 (194)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7777777776655433
No 406
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=28.03 E-value=66 Score=32.29 Aligned_cols=39 Identities=41% Similarity=0.487 Sum_probs=32.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhh
Q 001118 861 NLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAE 899 (1150)
Q Consensus 861 ~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~e 899 (1150)
.+.-++-.--+||..|||-+..|+|||.-|...|.||-+
T Consensus 12 ~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 12 NLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 344444445689999999999999999999999999865
No 407
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=28.01 E-value=24 Score=35.15 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.6
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999764
No 408
>PHA02653 RNA helicase NPH-II; Provisional
Probab=27.99 E-value=48 Score=42.52 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCcee
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyT 168 (1150)
.++..++.|. .|+..|+||||||..
T Consensus 171 qil~~i~~gk--dvIv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRK--PVVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCC--CEEEECCCCCCchhH
Confidence 4445556665 458999999999954
No 409
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=27.96 E-value=46 Score=43.24 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=15.8
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
.+|+-.|+||+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 577789999999999985
No 410
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=27.90 E-value=41 Score=42.53 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=24.2
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 127 GPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 127 ~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+...|..++..+. .+.-......++..|+||||||...
T Consensus 235 ~lt~~Q~~ai~~I~----~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 235 KLTRAQKRVVKEIL----QDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCHHHHHHHHHHH----HHhccCCCccEEEECCCCCcHHHHH
Confidence 44455665554433 3322333445789999999999864
No 411
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=27.73 E-value=66 Score=40.38 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=29.5
Q ss_pred EEEEeccCCCCCceeec---CCC---CCCCchhhHHHHHHHhhhc
Q 001118 154 TVFAYGVTSSGKTHTMH---GEQ---KSPGIIPLAVKDVFGIIQE 192 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~---G~~---~~~GIIPRal~dLF~~I~~ 192 (1150)
.||..|+|.|||||--. +.. --.|=+-....++|++.+.
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 49999999999999864 221 2257777888899988764
No 412
>PRK07261 topology modulation protein; Provisional
Probab=27.72 E-value=26 Score=36.75 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.9
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999999765
No 413
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=27.51 E-value=23 Score=43.57 Aligned_cols=18 Identities=39% Similarity=0.423 Sum_probs=15.8
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..|.-.|+||+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467789999999999985
No 414
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=27.45 E-value=1.5e+03 Score=29.69 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=35.8
Q ss_pred hHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhh
Q 001118 903 YAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEAL 943 (1150)
Q Consensus 903 yaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~ 943 (1150)
-=+++|++..+||-+|-...+++.-|+.++-.+|..+..+-
T Consensus 157 e~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~ 197 (698)
T KOG0978|consen 157 ELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKV 197 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34678999999999999999999999999999997665553
No 415
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=27.43 E-value=24 Score=31.94 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=12.5
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999765
No 416
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.39 E-value=3.4e+02 Score=33.69 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 413 LIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDL-VNLKLQLEAGQVKLQSRLEEEEQEKAALLGRIQRLTKLI 488 (1150)
Q Consensus 413 li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~-~~lk~qle~~~~~Lq~~Lee~ee~~~~L~~~i~~L~k~i 488 (1150)
.+..+.++.+.|++|.+.|++... ++ ......++..+.+++.+.++++.+..++...+++|++++
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~-----------~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQ-----------SIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666777777776654211 11 122344445556666677777777888888888888777
No 417
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.32 E-value=4.4e+02 Score=25.50 Aligned_cols=87 Identities=25% Similarity=0.382 Sum_probs=52.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhH
Q 001118 700 EHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENT 779 (1150)
Q Consensus 700 ~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~ 779 (1150)
...+.+..||..-+.++..|+..+-+.....-+..+.-|+.+ |-.|| |.+.. -|.+.=+.+|.+|+..=-..-.
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~----LE~~L-e~aL~-~VR~rK~~~l~~~i~~l~~ke~ 85 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQ----LEQQL-ESALK-RVRSRKDQLLMEQIEELKKKER 85 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHH----HHHhh-hhhHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888887777665555554445544 22222 12221 2666666777766655555555
Q ss_pred HHHHHHHHHHHHH
Q 001118 780 EMQETILLLRQQI 792 (1150)
Q Consensus 780 elqe~v~~l~qql 792 (1150)
.|++.-..|++++
T Consensus 86 ~l~~en~~L~~~~ 98 (100)
T PF01486_consen 86 ELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHh
Confidence 5666666666654
No 418
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=27.32 E-value=32 Score=40.40 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 140 AQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 140 v~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
...++..++.+. +.|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 345666666654 788889999999998764
No 419
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=27.26 E-value=33 Score=43.71 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=28.2
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCcee
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyT 168 (1150)
+.|+.+++....-..+.+.+. . +...+..|+-+|.+|||||+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~-----~-~a~~~~pVLI~GE~GTGK~~l 415 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVE-----M-VAQSDSTVLILGETGTGKELI 415 (686)
T ss_pred ccccceeecCHHHHHHHHHHH-----H-HhCCCCCEEEECCCCcCHHHH
Confidence 567777765544444433322 1 345678899999999999874
No 420
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=27.26 E-value=27 Score=36.29 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.9
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998654
No 421
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.11 E-value=1.8e+02 Score=37.11 Aligned_cols=11 Identities=27% Similarity=0.187 Sum_probs=4.4
Q ss_pred CCCCCCCCCCC
Q 001118 9 RSSISPFRSRK 19 (1150)
Q Consensus 9 ~~~~sp~rsr~ 19 (1150)
+..++|...+.
T Consensus 383 ~~~~~~~~~~~ 393 (620)
T PRK14954 383 SPAGSPDVKKK 393 (620)
T ss_pred CCCCCccccCC
Confidence 33444443333
No 422
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.04 E-value=3.4e+02 Score=30.61 Aligned_cols=74 Identities=24% Similarity=0.245 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 410 EKSLIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKAALLGRIQRLTKL 487 (1150)
Q Consensus 410 ~~~li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~Lee~ee~~~~L~~~i~~L~k~ 487 (1150)
....|..|.+|+..|..|-...-..+. ........++....+.+....+.+..+....+++..|..+|.++.+.
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLr----qI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELR----QINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888888888876432211100 00011122333344455555556666666677788888888877665
No 423
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=26.90 E-value=44 Score=39.18 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=20.8
Q ss_pred HHhhcCCCeEEEEeccCCCCCceee
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+.+.+|.+..+|..++||||||...
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHH
Confidence 4567788888899999999999874
No 424
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=26.76 E-value=3.2e+02 Score=28.48 Aligned_cols=62 Identities=26% Similarity=0.304 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 418 QKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKAALLGRIQRL 484 (1150)
Q Consensus 418 qkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~Lee~ee~~~~L~~~i~~L 484 (1150)
++||-.||+.-..|++--.. .+=......-+.+||..+..|+.+++.+.+++..+.-+...+
T Consensus 46 reEVvrlKQrRRTLKNRGYA-----~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYA-----QSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888777643211 111111223366778888888888888887777766655544
No 425
>PRK08118 topology modulation protein; Reviewed
Probab=26.68 E-value=28 Score=36.48 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=12.2
Q ss_pred EEEeccCCCCCcee
Q 001118 155 VFAYGVTSSGKTHT 168 (1150)
Q Consensus 155 IfAYGQTGSGKTyT 168 (1150)
|+..|++|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999953
No 426
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=26.57 E-value=70 Score=36.53 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=18.9
Q ss_pred hcCCCeEEEEeccCCCCCcee
Q 001118 148 MQGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 148 L~GyN~tIfAYGQTGSGKTyT 168 (1150)
-.||...||..||+|.|||..
T Consensus 42 k~GF~FNIMVVgqSglgkstl 62 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTL 62 (336)
T ss_pred hccCceEEEEEecCCCCchhh
Confidence 389999999999999999854
No 427
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=26.44 E-value=51 Score=35.33 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=21.8
Q ss_pred HHHHHhhcC-C--CeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQG-I--NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~G-y--N~tIfAYGQTGSGKTyTM~ 170 (1150)
+-+|.++.| + ...+.-||++|+|||..+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 567777754 3 4567789999999998764
No 428
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=26.41 E-value=24 Score=45.49 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.4
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
|..++..|.||||||++|.
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 5567889999999999985
No 429
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=26.40 E-value=24 Score=40.11 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=14.1
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
-|+-||++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5888999999999875
No 430
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=26.38 E-value=45 Score=36.02 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=21.3
Q ss_pred HHHHHhhc-CC--CeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQ-GI--NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~-Gy--N~tIfAYGQTGSGKTyTM~ 170 (1150)
+-+|.++. |+ ..++.-+|++|+|||+...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 34566664 44 5678889999999998653
No 431
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=26.36 E-value=1.5e+03 Score=29.31 Aligned_cols=190 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhh-hHHHHHHHhhcccchhhhhccchhhHHHHHHHHhh-
Q 001118 698 LREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMS-QALSKLTTQLNEKTFELEIKSADNRILQEQLQMKI- 775 (1150)
Q Consensus 698 i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~-q~~~~l~~qlnek~feleik~adnrilqeql~~k~- 775 (1150)
|..|+..++++..+...++...-++-.-... ....+. +.+..|..||..-.-++.-..|--.-|+.+|++..
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~------~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~ 272 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAYRAQSDLLMG------NNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGS 272 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccc------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q ss_pred ---------------hhhHHHHHHHHHHHHHHHHhhhccCCCCccccccCCCCCCCCchhhhhhhhccccCCCCCccccc
Q 001118 776 ---------------SENTEMQETILLLRQQIDSLSNKMSGSPEQMAENDGIPLKPCSEEISQQKNAWRNGLGSCEETFV 840 (1150)
Q Consensus 776 ---------------~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (1150)
..+.+|......|+.++.++... +.
T Consensus 273 ~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~----------------------------------------y~ 312 (754)
T TIGR01005 273 LDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTT----------------------------------------ML 312 (754)
T ss_pred ccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHh----------------------------------------hC
Q ss_pred cCCCCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHH
Q 001118 841 DEHTPTSVMSLNRIFSHEESNLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAE 920 (1150)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~lae 920 (1150)
..|+ +++.-..+|++|++...+. .+.+.+....++..+..
T Consensus 313 ~~hP--------------------~v~~l~~qi~~l~~~i~~e--------------------~~~~~~~~~~~~~~a~~ 352 (754)
T TIGR01005 313 ANHP--------------------RVVAAKSSLADLDAQIRSE--------------------LQKITKSLLMQADAAQA 352 (754)
T ss_pred CCCH--------------------HHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 921 EVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSERE 1000 (1150)
Q Consensus 921 evtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~ 1000 (1150)
.+..|..+=+++.+.+... +.......+|++|..+..+- |+..|.-.+
T Consensus 353 ~~~~L~~~l~~~~~~~~~~-----------------------------~~~~~e~~~L~Re~~~~~~~---Y~~ll~r~~ 400 (754)
T TIGR01005 353 RESQLVSDVNQLKAASAQA-----------------------------GEQQVDLDALQRDAAAKRQL---YESYLTNYR 400 (754)
T ss_pred HHHHHHHHHHHHHHHHHhC-----------------------------cHhHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_pred hHHHH
Q 001118 1001 QVEGE 1005 (1150)
Q Consensus 1001 ~~e~e 1005 (1150)
+....
T Consensus 401 e~~~~ 405 (754)
T TIGR01005 401 QAASR 405 (754)
T ss_pred HHHHh
No 432
>PHA03247 large tegument protein UL36; Provisional
Probab=26.23 E-value=2.6e+02 Score=41.23 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=6.6
Q ss_pred ccccccccccc
Q 001118 507 RRRHSFGEDEL 517 (1150)
Q Consensus 507 ~r~~s~~e~~~ 517 (1150)
.+-++|+++..
T Consensus 3002 ~~~~~w~~~~~ 3012 (3151)
T PHA03247 3002 SRVSSWASSLA 3012 (3151)
T ss_pred CCcchhhhhcc
Confidence 35667776544
No 433
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=26.18 E-value=1.4e+03 Score=28.65 Aligned_cols=146 Identities=21% Similarity=0.235 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhhhh-hhhh-hhh---HHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhh
Q 001118 868 MQAAEIENLKQERVKLVEERDGLEIHSQK-LAEE-ASY---AKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEA 942 (1150)
Q Consensus 868 ~q~~eie~lk~~~~~l~e~k~~l~~~nqk-l~ee-~sy---aK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~ 942 (1150)
.+.+|..+.|++..+....|+.|-..-+. ...+ ... .-||- .+..|...+-+|++.|..|=.-|..|+.-....
T Consensus 232 ~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~-~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 232 SEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELE-ELKQERDHLQEEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888887777777777766444333 1211 110 01122 345666677777777777766666666555444
Q ss_pred hcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh
Q 001118 943 LSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLEN 1022 (1150)
Q Consensus 943 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len 1022 (1150)
.... .++.. -.+.++.--+..-..+|+-++..-.|-...+.|+.+.-...--|-.+-|+
T Consensus 311 ~~~~-------------~~~~~--------~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~ 369 (511)
T PF09787_consen 311 LEGE-------------QESFR--------EQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKES 369 (511)
T ss_pred HHhH-------------HHHHH--------HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 3100 00000 00001111111111114445555555666677776666666667777899
Q ss_pred hhhhHHHHHHHHh
Q 001118 1023 ELANMWVLIAKMR 1035 (1150)
Q Consensus 1023 ~lanmwvlvaklk 1035 (1150)
|+.-||.-|+..-
T Consensus 370 E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 370 EIQKLRNQLSARA 382 (511)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
No 434
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=26.13 E-value=39 Score=40.28 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.4
Q ss_pred cCCCeEEEEeccCCCCCcee
Q 001118 149 QGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyT 168 (1150)
.|+.-+||+.|+.|+|||.-
T Consensus 20 ~Gi~f~im~~G~sG~GKttf 39 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTF 39 (373)
T ss_pred cCCceEEEEecCCCCchhHH
Confidence 69999999999999999864
No 435
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.88 E-value=1.7e+03 Score=29.73 Aligned_cols=18 Identities=22% Similarity=0.505 Sum_probs=13.3
Q ss_pred CeEEEEeccCCCCCceee
Q 001118 152 NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM 169 (1150)
++..+-+|+||||||..|
T Consensus 25 ~gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 25 SGIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 345566899999998654
No 436
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.76 E-value=31 Score=42.36 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=17.7
Q ss_pred hhcCCCeEEEEeccCCCCCceeecC
Q 001118 147 AMQGINGTVFAYGVTSSGKTHTMHG 171 (1150)
Q Consensus 147 vL~GyN~tIfAYGQTGSGKTyTM~G 171 (1150)
+..|.+ ++|++|||||||+...+
T Consensus 108 i~~Grd--l~acAqTGsGKT~aFLi 130 (482)
T KOG0335|consen 108 ISGGRD--LMACAQTGSGKTAAFLI 130 (482)
T ss_pred eecCCc--eEEEccCCCcchHHHHH
Confidence 345554 48999999999998764
No 437
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=25.60 E-value=6.6e+02 Score=27.15 Aligned_cols=122 Identities=25% Similarity=0.246 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHh
Q 001118 862 LNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKE 941 (1150)
Q Consensus 862 ~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~ 941 (1150)
+..++.....|+.++.....++...=..+...+++|-.+... -...|..|..|++.|......|..+|.--..
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~-------~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSE-------KERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445566666666555555544555555555444332 2334445555555555555555444442211
Q ss_pred hhcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 001118 942 ALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLE 1021 (1150)
Q Consensus 942 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~le 1021 (1150)
..+.|+-|+.+-.=-=..+|.-+..-+.=-.+|-.+.=.-|.+||+-=
T Consensus 145 --------------------------------~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 145 --------------------------------ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123344444443333334444444444445667777777777777644
Q ss_pred h
Q 001118 1022 N 1022 (1150)
Q Consensus 1022 n 1022 (1150)
|
T Consensus 193 N 193 (194)
T PF08614_consen 193 N 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 438
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=25.60 E-value=30 Score=33.98 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.5
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
|+-.|++|||||+.-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999753
No 439
>PLN02678 seryl-tRNA synthetase
Probab=25.55 E-value=2.1e+02 Score=35.20 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=47.0
Q ss_pred CchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcc
Q 001118 655 TTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPH 732 (1150)
Q Consensus 655 ~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~ 732 (1150)
.+...+++.||.+.|-++-+++- ++ ....+-+.+..+++.|++||+....++..||..|.+-+..-|+
T Consensus 43 r~l~~~~e~lr~erN~~sk~I~~----~k------~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPN 110 (448)
T PLN02678 43 RQRQFELDSLRKEFNKLNKEVAK----LK------IAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----Hh------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34566778888888888877753 11 1122335667788899999999999999998888776554443
No 440
>PRK06696 uridine kinase; Validated
Probab=25.52 E-value=63 Score=35.16 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 134 HVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 134 eVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
++...++..++. .-.+....|.-.|.+|||||+..
T Consensus 5 ~~~~~la~~~~~-~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 5 QLIKELAEHILT-LNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHH-hCCCCceEEEEECCCCCCHHHHH
Confidence 344444433332 12455666777899999999865
No 441
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=25.44 E-value=65 Score=35.57 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=22.6
Q ss_pred HHHHHHHhhc--CCCeEEEEeccCCCCCceee
Q 001118 140 AQHVVNGAMQ--GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 140 v~plV~~vL~--GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..+++.+.. .-...|.-||..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 3455555555 66788899999999999765
No 442
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=25.39 E-value=25 Score=35.81 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=11.2
Q ss_pred EEEeccCCCCCcee
Q 001118 155 VFAYGVTSSGKTHT 168 (1150)
Q Consensus 155 IfAYGQTGSGKTyT 168 (1150)
|+-.|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999854
No 443
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=25.22 E-value=6.9e+02 Score=26.48 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=53.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhH
Q 001118 700 EHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENT 779 (1150)
Q Consensus 700 ~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~ 779 (1150)
.+|.++.=...-.++|++.++.++..-=+.+.+ ...++.-| |. .+|.-+.+++..++.|..
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~-L~~iDFeq---------------Lk---ien~~l~~kIeERn~eL~ 66 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEG-LHLIDFEQ---------------LK---IENQQLNEKIEERNKELL 66 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccHHHHHH---------------HH---HHHHHHHHHHHHHHHHHH
Confidence 456777777777778888888777654333322 22233333 32 488889999999999998
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 001118 780 EMQETILLLRQQIDSLSNK 798 (1150)
Q Consensus 780 elqe~v~~l~qql~~~~~~ 798 (1150)
.|+.++..-=|.|+..=++
T Consensus 67 ~Lk~~~~~~v~~L~h~keK 85 (177)
T PF13870_consen 67 KLKKKIGKTVQILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888877766666554443
No 444
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=25.18 E-value=33 Score=44.44 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=13.7
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5777999999999765
No 445
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=25.17 E-value=35 Score=42.15 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=30.9
Q ss_pred eeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 118 IAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 118 ~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
..+.||.+++....-..+.+.+ .. +...+..|+-+|.+||||++..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~-----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA-----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 3578999987655434444322 11 2346778999999999998754
No 446
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=25.08 E-value=2.1e+02 Score=34.82 Aligned_cols=67 Identities=15% Similarity=0.359 Sum_probs=49.4
Q ss_pred CchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCc--chHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcc
Q 001118 655 TTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSE--DSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPH 732 (1150)
Q Consensus 655 ~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~--~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~ 732 (1150)
.+...+++.||.+.|-++-+++. ++ +..+ -..+..+++.|+++|++...++..||..+.+.+..-|+
T Consensus 40 r~~~~~~~~l~~erN~~sk~i~~----~~-------~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN 108 (418)
T TIGR00414 40 KKLLSEIEELQAKRNELSKQIGK----AK-------GQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPN 108 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----Hh-------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45566777888888888877743 11 1222 35778899999999999999999999988877666554
No 447
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=25.03 E-value=36 Score=42.85 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.1
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
-..+-.|+.|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 445678999999999985
No 448
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=25.00 E-value=56 Score=41.77 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceeec
Q 001118 133 RHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 133 eeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.||.. +......++ .|.|-||+.-|.+|||||.|+-
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGsGKTet~K 104 (653)
T cd01379 67 PHIFAI-ADAAYQSLVTYNQDQCIVISGESGSGKTESAH 104 (653)
T ss_pred CcHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 346643 333333333 5889999999999999999984
No 449
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=24.96 E-value=45 Score=41.02 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhh
Q 001118 140 AQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPL 181 (1150)
Q Consensus 140 v~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPR 181 (1150)
++..+.=+..|... +|.||+.|||||.... .-+||+|-
T Consensus 187 AKrAleiAAAGgHn-Ll~~GpPGtGKTmla~---Rl~~lLPp 224 (490)
T COG0606 187 AKRALEIAAAGGHN-LLLVGPPGTGKTMLAS---RLPGLLPP 224 (490)
T ss_pred HHHHHHHHHhcCCc-EEEecCCCCchHHhhh---hhcccCCC
Confidence 33333333445443 6789999999998763 33566663
No 450
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=24.94 E-value=26 Score=46.21 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=17.6
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|+-.+.+|+||||||++|.
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CcccEEEECCCCCCHHHHHH
Confidence 37788999999999999985
No 451
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=24.87 E-value=59 Score=37.20 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=24.1
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 128 PATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 128 ~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+...|.++-+ .+.+.+-+|.+ ++.=.+||+|||.+.+
T Consensus 9 ~r~~Q~~~m~----~v~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 9 PYPIQYEFME----ELKRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHH----HHHHHHHcCCc--EEEECCCCcchhHHHH
Confidence 3455655544 44455556754 4666799999998875
No 452
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=24.87 E-value=59 Score=37.20 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=24.1
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 128 PATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 128 ~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+...|.++-+ .+.+.+-+|.+ ++.=.+||+|||.+.+
T Consensus 9 ~r~~Q~~~m~----~v~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 9 PYPIQYEFME----ELKRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHH----HHHHHHHcCCc--EEEECCCCcchhHHHH
Confidence 3455655544 44455556754 4666799999998875
No 453
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=24.86 E-value=42 Score=37.42 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=24.1
Q ss_pred EEeccCCCCCceeec------CCC-----CCCCchhhHHHHHHHhhhc
Q 001118 156 FAYGVTSSGKTHTMH------GEQ-----KSPGIIPLAVKDVFGIIQE 192 (1150)
Q Consensus 156 fAYGQTGSGKTyTM~------G~~-----~~~GIIPRal~dLF~~I~~ 192 (1150)
..+|++|||||.|+- |-. -.+++=..++..||.-+..
T Consensus 36 ~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred CCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh
Confidence 469999999999973 431 2456666677777765543
No 454
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=24.85 E-value=2.7e+02 Score=37.56 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=40.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 408 MDEKSLIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKAALLGRIQRLTKL 487 (1150)
Q Consensus 408 ~d~~~li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~Lee~ee~~~~L~~~i~~L~k~ 487 (1150)
+|..+.+.++++++..|+.+++.+++.+....-......+-++.- +.++++.+.+.+.|.+.+..|.++
T Consensus 925 id~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e-----------~~kl~~~~~~l~~l~~~l~~l~~~ 993 (995)
T PTZ00419 925 IDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLN-----------DEKIDELNEEIKQLEQAIEELKSL 993 (995)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788999999999999888876644322222232222111 123445555666666666666644
No 455
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=24.77 E-value=53 Score=37.63 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=17.7
Q ss_pred hhcC-CCeEEEEeccCCCCCceee
Q 001118 147 AMQG-INGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 147 vL~G-yN~tIfAYGQTGSGKTyTM 169 (1150)
+-.| +..+++-||+.|+|||.+.
T Consensus 30 ~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 30 IKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHH
Confidence 3345 3457889999999999876
No 456
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.76 E-value=30 Score=41.74 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=18.6
Q ss_pred HHhhcCCCeEEEEeccCCCCCcee
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyT 168 (1150)
.-+-.|.-.+.+-||+.|+|||..
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHH
Confidence 334456777888999999999964
No 457
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.73 E-value=4e+02 Score=32.93 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=21.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 001118 769 EQLQMKISENTEMQETILLLRQQIDSLS 796 (1150)
Q Consensus 769 eql~~k~~e~~elqe~v~~l~qql~~~~ 796 (1150)
++-+++...+..++++|..|++||.+++
T Consensus 421 ~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 421 ELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3334556677788999999999998865
No 458
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=24.69 E-value=4.6e+02 Score=27.23 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcc-------------------------hHHHHHHHHhHHHHHH
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSED-------------------------SQLREHMQKLKDEISE 711 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~-------------------------~~i~~~~~~l~~ei~~ 711 (1150)
|.|-+=+||+.+..|+.=..-+-..|.|-..-+.-+|.. ...+..++.|-..|-.
T Consensus 1 M~DrlTQLQd~ldqL~~~f~~si~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elA~dIi~ 80 (144)
T PF11221_consen 1 MADRLTQLQDCLDQLAEQFCNSIGYLQRDAPPSPLSPNDPSISDPKPQAPPQQQQQAEPAPDPPEEFEENIKELATDIIR 80 (144)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGG-----------------------------HHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCccccchhhhhhhhcccCCChhhHHHHHHHHHHHHHH
Confidence 578888999999999865555555666655555555444 3344555666666666
Q ss_pred HHHHHHHHHHHhhhccccCccccccchhh-hHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Q 001118 712 KKLQIRVLEQRMIGSVERTPHTLSTTEMS-QALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLR 789 (1150)
Q Consensus 712 k~~q~~~le~~i~~s~~~s~~~~~~~e~~-q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~ 789 (1150)
|-+||..|= ..-|+-...-+-+ ..|.+|- ..|+...++|.+++.|-.+|-+.|..+=
T Consensus 81 kakqIe~LI-------dsLPg~~~see~Q~~~i~~L~--------------~E~~~~~~el~~~v~e~e~ll~~v~~~i 138 (144)
T PF11221_consen 81 KAKQIEYLI-------DSLPGIEVSEEEQLKRIKELE--------------EENEEAEEELQEAVKEAEELLKQVQELI 138 (144)
T ss_dssp HHHHHHHHH-------HHSTTSSS-HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HhCCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666553 3333321111111 2333332 3567778888888888888877776553
No 459
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.66 E-value=58 Score=39.74 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=15.3
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..|+..|++|+|||+|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999975
No 460
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=24.63 E-value=28 Score=42.39 Aligned_cols=40 Identities=20% Similarity=0.201 Sum_probs=24.3
Q ss_pred cCCCeEEEEeccCCCCCceeecCC--C--CCCCchhhHHHHHHHhhh
Q 001118 149 QGINGTVFAYGVTSSGKTHTMHGE--Q--KSPGIIPLAVKDVFGIIQ 191 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM~G~--~--~~~GIIPRal~dLF~~I~ 191 (1150)
.++|. +-.|++|+||||.-.+- . -..| -+..+..||..+.
T Consensus 208 ~~~Nl--i~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~ 251 (449)
T TIGR02688 208 PNYNL--IELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIS 251 (449)
T ss_pred cCCcE--EEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHH
Confidence 56665 56799999999887641 1 1134 3334556665554
No 461
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=24.58 E-value=1.2e+02 Score=42.90 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=5.4
Q ss_pred eEEEEeccC
Q 001118 153 GTVFAYGVT 161 (1150)
Q Consensus 153 ~tIfAYGQT 161 (1150)
+..+.||..
T Consensus 1810 GVmaGYgna 1818 (2039)
T PRK15319 1810 GVMASYINA 1818 (2039)
T ss_pred EEEEEeccc
Confidence 445677763
No 462
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=24.57 E-value=29 Score=35.97 Aligned_cols=17 Identities=18% Similarity=0.493 Sum_probs=14.4
Q ss_pred EEEEeccCCCCCceeec
Q 001118 154 TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~ 170 (1150)
.|+-.|++|||||.++.
T Consensus 3 ~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLD 19 (179)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57788999999998863
No 463
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=24.48 E-value=1.5e+02 Score=27.87 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcch--HHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 001118 659 DQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDS--QLREHMQKLKDEISEKKLQIRVLEQRM 723 (1150)
Q Consensus 659 d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~--~i~~~~~~l~~ei~~k~~q~~~le~~i 723 (1150)
.+||-|+-.-=-|-..|-|=...|.........+.... ++++++..|..|++.++..+..+++.|
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 464
>PRK08233 hypothetical protein; Provisional
Probab=24.46 E-value=32 Score=35.29 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=12.6
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999865
No 465
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=24.45 E-value=40 Score=42.12 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=17.6
Q ss_pred hcCCCeEEEEeccCCCCCcee
Q 001118 148 MQGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 148 L~GyN~tIfAYGQTGSGKTyT 168 (1150)
+...+..|+-+|.+||||++.
T Consensus 238 ~A~s~~pVLI~GE~GTGKe~~ 258 (538)
T PRK15424 238 YARSSAAVLIQGETGTGKELA 258 (538)
T ss_pred HhCCCCcEEEECCCCCCHHHH
Confidence 456788999999999999754
No 466
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=24.36 E-value=36 Score=41.37 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=16.6
Q ss_pred CCCeEEEEeccCCCCCceee
Q 001118 150 GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM 169 (1150)
+....|+-||+.|+|||++-
T Consensus 274 ~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred CCCCeeEEECCCCCCHHHHH
Confidence 45557999999999999864
No 467
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.33 E-value=1.6e+02 Score=29.45 Aligned_cols=55 Identities=29% Similarity=0.369 Sum_probs=42.3
Q ss_pred cchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 001118 736 TTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLSN 797 (1150)
Q Consensus 736 ~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 797 (1150)
+-++-..|+.|..|+++=.-++ .-|..++..-+-||..|+-+..+|+..|.....
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~-------~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEEL-------EELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666666666666544444 348889999999999999999999999988765
No 468
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=24.31 E-value=33 Score=35.32 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=13.0
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
++.+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999855
No 469
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.19 E-value=6.1e+02 Score=26.88 Aligned_cols=97 Identities=25% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccch
Q 001118 659 DQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTE 738 (1150)
Q Consensus 659 d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e 738 (1150)
..++.+++.+.-+..+.-.....+..+. -.-...+..++.++.+++.....++.|.
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~l~~l~~~~~~~~~e~~~l~------------------ 150 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQELR------ELLKSVEERLDSLDESIKELEKEIRELQ------------------ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q ss_pred hhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHH
Q 001118 739 MSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETI 785 (1150)
Q Consensus 739 ~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v 785 (1150)
+.+.++..++.++.+++ .+++--.++|++++.+++++.+..
T Consensus 151 --~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~l~~~~ 191 (191)
T PF04156_consen 151 --KELQDSREEVQELRSQL----ERLQENLQQLEEKIQELQELLEQL 191 (191)
T ss_pred --HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhC
No 470
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=24.17 E-value=79 Score=34.91 Aligned_cols=48 Identities=31% Similarity=0.285 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhh
Q 001118 871 AEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYEN 929 (1150)
Q Consensus 871 ~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN 929 (1150)
.|+++|..++..+.|+...|...|..|.|-+..|+-|| +=+.+||.+.
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la-----------~~ie~l~~~~ 172 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLA-----------EVIERLTGQE 172 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhccC
Confidence 38889988888888888888888877777666665555 4456666553
No 471
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=24.16 E-value=29 Score=39.84 Aligned_cols=13 Identities=46% Similarity=0.624 Sum_probs=11.6
Q ss_pred EeccCCCCCceee
Q 001118 157 AYGVTSSGKTHTM 169 (1150)
Q Consensus 157 AYGQTGSGKTyTM 169 (1150)
-.|++|||||+||
T Consensus 32 liGpSGsGKTTtL 44 (309)
T COG1125 32 LIGPSGSGKTTTL 44 (309)
T ss_pred EECCCCCcHHHHH
Confidence 3699999999998
No 472
>PRK09752 adhesin; Provisional
Probab=23.78 E-value=79 Score=42.78 Aligned_cols=6 Identities=33% Similarity=0.351 Sum_probs=3.1
Q ss_pred EEEEec
Q 001118 154 TVFAYG 159 (1150)
Q Consensus 154 tIfAYG 159 (1150)
.++.||
T Consensus 1034 VMaGYG 1039 (1250)
T PRK09752 1034 IVGGYS 1039 (1250)
T ss_pred EEEEEe
Confidence 445565
No 473
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=23.76 E-value=59 Score=42.36 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceee
Q 001118 133 RHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 133 eeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM 169 (1150)
-.||... ......++ .|.|-||+.-|-+|||||.|.
T Consensus 67 PHifaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 67 PHIYSLA-QTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CCHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 3567533 33333333 699999999999999999986
No 474
>PRK06217 hypothetical protein; Validated
Probab=23.75 E-value=33 Score=36.02 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.8
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998753
No 475
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=23.73 E-value=36 Score=39.80 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=42.1
Q ss_pred eeeeCCCCcchhHHHHHHHHH-HHHhhcCCC---eEEEEeccCCCCCceee-----------cCCC------CCCCchhh
Q 001118 123 DKVFGPATTTRHVYDVAAQHV-VNGAMQGIN---GTVFAYGVTSSGKTHTM-----------HGEQ------KSPGIIPL 181 (1150)
Q Consensus 123 D~VF~~~atQeeVYe~vv~pl-V~~vL~GyN---~tIfAYGQTGSGKTyTM-----------~G~~------~~~GIIPR 181 (1150)
+-|-+-+.--+.+-+.++-|+ ..++|.|.- ..|+-||+.|+||+|.- |.-. ...|=--+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence 334333333333333333333 234555543 67999999999999953 2111 12466668
Q ss_pred HHHHHHHhhhcCCC
Q 001118 182 AVKDVFGIIQETPG 195 (1150)
Q Consensus 182 al~dLF~~I~~~~~ 195 (1150)
.+..||....+...
T Consensus 213 LVknLFemARe~kP 226 (439)
T KOG0739|consen 213 LVKNLFEMARENKP 226 (439)
T ss_pred HHHHHHHHHHhcCC
Confidence 88999998765443
No 476
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.72 E-value=1.5e+03 Score=30.23 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhc
Q 001118 699 REHMQKLKDEISEKKLQIRVLEQRMIGS 726 (1150)
Q Consensus 699 ~~~~~~l~~ei~~k~~q~~~le~~i~~s 726 (1150)
---|+-|..|+...+++.|.|.||+.+-
T Consensus 386 ALA~QplrsENaqLrRrLrilnqqlreq 413 (861)
T PF15254_consen 386 ALAMQPLRSENAQLRRRLRILNQQLREQ 413 (861)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3346789999999999999999999874
No 477
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.58 E-value=42 Score=42.78 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=15.0
Q ss_pred EEEEeccCCCCCceeec
Q 001118 154 TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~ 170 (1150)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999875
No 478
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=23.47 E-value=54 Score=42.38 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=20.6
Q ss_pred HHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 141 QHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 141 ~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
..+|..+| |.|+.|-+ +||+|||+.-
T Consensus 68 ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 68 EELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred HHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 35677888 99987665 9999999863
No 479
>CHL00195 ycf46 Ycf46; Provisional
Probab=23.41 E-value=32 Score=42.49 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.3
Q ss_pred CeEEEEeccCCCCCceee
Q 001118 152 NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM 169 (1150)
.-.|+-||+.|+|||++.
T Consensus 259 pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999765
No 480
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=23.34 E-value=1.8e+03 Score=29.09 Aligned_cols=114 Identities=23% Similarity=0.201 Sum_probs=83.7
Q ss_pred hhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhccCCCCccccccCCCCCCCCchhhhhhhhccccCCCC
Q 001118 755 FELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLSNKMSGSPEQMAENDGIPLKPCSEEISQQKNAWRNGLGS 834 (1150)
Q Consensus 755 feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1150)
-+|..|-+-++-|-.-++..=+...++||.+..|=||+...-.++ +
T Consensus 440 e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~n---------------------------f------- 485 (698)
T KOG0978|consen 440 EELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKN---------------------------F------- 485 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------------------H-------
Confidence 456666666666777777888888899999999999986544332 1
Q ss_pred CccccccCCCCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHH
Q 001118 835 CEETFVDEHTPTSVMSLNRIFSHEESNLNSQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVE 914 (1150)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavE 914 (1150)
.-..|-....|.+-.|.+++.-|+.+++.|. --+.+.--.
T Consensus 486 ---------------------------------klm~e~~~~~q~~k~L~~ek~~l~~~i~~l~-------~~~~~~~~~ 525 (698)
T KOG0978|consen 486 ---------------------------------KLMSERIKANQKHKLLREEKSKLEEQILTLK-------ASVDKLELK 525 (698)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 0235677888888999999988888888764 223345566
Q ss_pred HHhhHHHHHHhhhhhhhhhhHHHHHHhh
Q 001118 915 LRNLAEEVTRLSYENAKLNSELAAAKEA 942 (1150)
Q Consensus 915 lk~laeevtkl~~qN~kl~~el~~~~~~ 942 (1150)
+++|-+.++.|...=.+|.+|+.-....
T Consensus 526 i~~leeq~~~lt~~~~~l~~el~~~~~~ 553 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLIKELTTLTQS 553 (698)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHHHHH
Confidence 7889999999998888898888755444
No 481
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=23.30 E-value=62 Score=42.10 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=16.0
Q ss_pred CeEEEEeccCCCCCceee
Q 001118 152 NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM 169 (1150)
.++++-+|+||+|||+..
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 367999999999999986
No 482
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=23.27 E-value=41 Score=41.91 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=28.1
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
|.||.+++....-..+.+ .+. .+...+..|+-+|.+||||++.-
T Consensus 209 ~~f~~iiG~S~~m~~~~~-----~i~-~~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRA-----LVR-LYARSDATVLILGESGTGKELVA 252 (526)
T ss_pred cchhheeeCCHHHHHHHH-----HHH-HHhCCCCcEEEECCCCcCHHHHH
Confidence 677777765442222222 222 24567889999999999997643
No 483
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=23.20 E-value=49 Score=35.71 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=19.6
Q ss_pred HHHHhhcC---CCeEEEEeccCCCCCcee
Q 001118 143 VVNGAMQG---INGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 143 lV~~vL~G---yN~tIfAYGQTGSGKTyT 168 (1150)
-+|.++.| .+.+++.+|++|||||.-
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 35666643 378899999999999853
No 484
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=23.18 E-value=33 Score=30.53 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=12.7
Q ss_pred EEEeccCCCCCceeec
Q 001118 155 VFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~ 170 (1150)
++.+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5667888999998764
No 485
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=23.11 E-value=44 Score=40.69 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=26.4
Q ss_pred eeeeeeCCCCcchhHHHHHHHHHHHHhhcCC-CeEEEEeccCCCCCceeec
Q 001118 121 GFDKVFGPATTTRHVYDVAAQHVVNGAMQGI-NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 121 ~FD~VF~~~atQeeVYe~vv~plV~~vL~Gy-N~tIfAYGQTGSGKTyTM~ 170 (1150)
+||.|+|. +.+ +..+...+-.|. ..+++-||+.|+|||.+..
T Consensus 15 ~~~diiGq----~~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 15 TFSEILGQ----DAV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHHH
Confidence 57777763 333 233333444554 3457779999999998764
No 486
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.05 E-value=1.8e+02 Score=34.84 Aligned_cols=68 Identities=28% Similarity=0.438 Sum_probs=55.1
Q ss_pred chhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHh-----------cCCcch---HHHHHHHHhHHHHHHHHHHHHHHHH
Q 001118 656 TITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAA-----------SNSEDS---QLREHMQKLKDEISEKKLQIRVLEQ 721 (1150)
Q Consensus 656 ~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~-----------~~p~~~---~i~~~~~~l~~ei~~k~~q~~~le~ 721 (1150)
...+.+...+++.+.+++-|.--+..|.+|+|+-- +-.+++ +|+.-|.+|+.||++-.-+|-+||.
T Consensus 277 ~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 277 SAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheehh
Confidence 46788899999999999999999999999998632 223333 5777888999999999999988887
Q ss_pred Hh
Q 001118 722 RM 723 (1150)
Q Consensus 722 ~i 723 (1150)
.+
T Consensus 357 ~L 358 (359)
T PF10498_consen 357 TL 358 (359)
T ss_pred hc
Confidence 54
No 487
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=23.05 E-value=1.3e+03 Score=30.56 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=13.7
Q ss_pred hhhhhhhhHHHHhhhccccc
Q 001118 1099 ERRKCKELESLISRLKGEDI 1118 (1150)
Q Consensus 1099 ~~~~~~~~~~~~~~~k~~~~ 1118 (1150)
|..|-.+||..++.+-+.+.
T Consensus 386 Ek~rae~le~~~~s~s~~~~ 405 (916)
T KOG0249|consen 386 EKGRAEELEARVGSLSLGSN 405 (916)
T ss_pred hhhhhhhhhhhhccccccch
Confidence 34677888887777666653
No 488
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=22.98 E-value=2.8e+02 Score=25.09 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=28.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccc
Q 001118 698 LREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHT 733 (1150)
Q Consensus 698 i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~ 733 (1150)
+..++.+|..+|..-..+|..+++++.+..=.+.++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP 37 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAP 37 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCC
Confidence 457899999999999999999999998544333333
No 489
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.90 E-value=1.3e+03 Score=29.40 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhH
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLK 706 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~ 706 (1150)
+-.++..++++..-++-++=+-+--+.-|.+..-+..+++++..+.++|.
T Consensus 169 ~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLs 218 (557)
T COG0497 169 ARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLS 218 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Confidence 44566666666666666666666666666666666667777776666553
No 490
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.81 E-value=59 Score=37.91 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=20.3
Q ss_pred HHHHHhhcCC-CeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGI-NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~Gy-N~tIfAYGQTGSGKTyTM~ 170 (1150)
.+...+-.|. ...++-||+.|+|||++..
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 3444444553 4578889999999998764
No 491
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=22.72 E-value=47 Score=39.12 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=18.0
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
++..+.. +.-|+-+|++|+|||...
T Consensus 57 vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 57 ICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 4444433 456889999999999765
No 492
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=22.72 E-value=61 Score=37.00 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=21.2
Q ss_pred HHHHHhhcCC---CeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGI---NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~Gy---N~tIfAYGQTGSGKTyTM~ 170 (1150)
+-++.++.|- ...+.-||.+|||||..++
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4456677653 4567899999999997654
No 493
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.64 E-value=34 Score=41.49 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=16.4
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
...|...|+||+|||+|+.
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568889999999999984
No 494
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.63 E-value=30 Score=40.17 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.1
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
..+|+-.|.||||||+.|.
T Consensus 143 ~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 143 RKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3567888999999999985
No 495
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=22.60 E-value=64 Score=41.66 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHhhcCC------CeEEEEeccCCCCCcee
Q 001118 132 TRHVYDVAAQHVVNGAMQGI------NGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 132 QeeVYe~vv~plV~~vL~Gy------N~tIfAYGQTGSGKTyT 168 (1150)
|+++.+.+. ..|.....|+ .++++-+|+||+|||++
T Consensus 459 Q~~ai~~l~-~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~l 500 (731)
T TIGR02639 459 QDEAIDSLV-SSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTEL 500 (731)
T ss_pred cHHHHHHHH-HHHHHHhcCCCCCCCCceeEEEECCCCccHHHH
No 496
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.59 E-value=34 Score=41.30 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=0.0
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|+-.|++|+|||+|+
T Consensus 208 ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 208 IISLIGQTGVGKTTTL 223 (407)
T ss_pred EEEEECCCCCCHHHHH
No 497
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=22.55 E-value=30 Score=36.64 Aligned_cols=14 Identities=36% Similarity=0.347 Sum_probs=0.0
Q ss_pred EEEeccCCCCCcee
Q 001118 155 VFAYGVTSSGKTHT 168 (1150)
Q Consensus 155 IfAYGQTGSGKTyT 168 (1150)
|.-.|++|||||+.
T Consensus 2 IgI~G~sgSGKTTl 15 (194)
T PF00485_consen 2 IGIAGPSGSGKTTL 15 (194)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
No 498
>PRK01172 ski2-like helicase; Provisional
Probab=22.53 E-value=53 Score=41.71 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCeEEEEeccCCCCCc
Q 001118 141 QHVVNGAMQGINGTVFAYGVTSSGKT 166 (1150)
Q Consensus 141 ~plV~~vL~GyN~tIfAYGQTGSGKT 166 (1150)
..++..+..|.| ++..++||||||
T Consensus 28 ~~ai~~l~~~~n--vlv~apTGSGKT 51 (674)
T PRK01172 28 RMAIEQLRKGEN--VIVSVPTAAGKT 51 (674)
T ss_pred HHHHHHHhcCCc--EEEECCCCchHH
No 499
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.53 E-value=43 Score=38.57 Aligned_cols=12 Identities=50% Similarity=0.863 Sum_probs=0.0
Q ss_pred EEEeccCCCCCc
Q 001118 155 VFAYGVTSSGKT 166 (1150)
Q Consensus 155 IfAYGQTGSGKT 166 (1150)
|+.||+.|+|||
T Consensus 214 vllygppgtgkt 225 (435)
T KOG0729|consen 214 VLLYGPPGTGKT 225 (435)
T ss_pred eEEeCCCCCchh
No 500
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=22.50 E-value=38 Score=38.53 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=0.0
Q ss_pred cCCCeEEEEeccCCCCCceee
Q 001118 149 QGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+-..+|+..|++|+|||.|.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTI 89 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHH
Done!