Query 001118
Match_columns 1150
No_of_seqs 490 out of 2116
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 2.3E-89 7.8E-94 775.4 24.6 345 74-425 7-360 (365)
2 2owm_A Nckin3-434, related to 100.0 6.7E-88 2.3E-92 779.6 28.9 331 75-407 35-422 (443)
3 3b6u_A Kinesin-like protein KI 100.0 5.1E-88 1.8E-92 765.5 25.5 344 73-418 16-372 (372)
4 1t5c_A CENP-E protein, centrom 100.0 1.2E-87 4E-92 757.7 27.5 331 76-410 2-340 (349)
5 3cob_A Kinesin heavy chain-lik 100.0 7.7E-88 2.6E-92 763.6 25.5 341 76-432 3-351 (369)
6 3bfn_A Kinesin-like protein KI 100.0 8.8E-88 3E-92 766.5 25.0 348 73-429 16-373 (388)
7 1goj_A Kinesin, kinesin heavy 100.0 3.8E-87 1.3E-91 755.0 28.3 332 76-411 4-343 (355)
8 2vvg_A Kinesin-2; motor protei 100.0 3.3E-87 1.1E-91 754.1 26.1 329 77-409 3-346 (350)
9 2zfi_A Kinesin-like protein KI 100.0 8.1E-87 2.8E-91 755.1 22.5 330 77-406 3-362 (366)
10 1x88_A Kinesin-like protein KI 100.0 1.1E-86 3.8E-91 752.3 20.3 330 74-406 4-358 (359)
11 1bg2_A Kinesin; motor protein, 100.0 4.1E-86 1.4E-90 739.0 24.3 315 75-398 4-325 (325)
12 3lre_A Kinesin-like protein KI 100.0 7.7E-86 2.6E-90 744.5 26.2 323 74-398 6-355 (355)
13 2wbe_C Bipolar kinesin KRP-130 100.0 9.7E-86 3.3E-90 747.8 22.1 332 75-409 20-372 (373)
14 3gbj_A KIF13B protein; kinesin 100.0 4.1E-85 1.4E-89 738.3 23.5 320 79-398 2-350 (354)
15 4a14_A Kinesin, kinesin-like p 100.0 1.2E-84 3.9E-89 732.3 25.8 319 76-396 9-344 (344)
16 3nwn_A Kinesin-like protein KI 100.0 9.9E-85 3.4E-89 736.1 24.0 318 75-398 21-359 (359)
17 2h58_A Kinesin-like protein KI 100.0 5.7E-84 1.9E-88 723.0 25.2 319 76-400 2-330 (330)
18 2nr8_A Kinesin-like protein KI 100.0 8.6E-84 2.9E-88 728.2 23.8 318 75-398 20-358 (358)
19 3t0q_A AGR253WP; kinesin, alph 100.0 2E-83 6.9E-88 723.4 25.8 320 76-402 3-348 (349)
20 1f9v_A Kinesin-like protein KA 100.0 4E-83 1.4E-87 720.4 25.9 320 77-403 2-346 (347)
21 2rep_A Kinesin-like protein KI 100.0 5.8E-83 2E-87 725.3 24.9 319 74-398 18-376 (376)
22 2heh_A KIF2C protein; kinesin, 100.0 8.9E-83 3E-87 725.2 21.7 315 76-401 49-385 (387)
23 1ry6_A Internal kinesin; kines 100.0 7.6E-83 2.6E-87 721.0 20.5 320 79-407 1-340 (360)
24 1v8k_A Kinesin-like protein KI 100.0 1.4E-82 4.8E-87 727.8 21.8 317 77-404 70-408 (410)
25 3u06_A Protein claret segregat 100.0 3E-82 1E-86 726.8 24.5 324 76-408 57-393 (412)
26 4etp_A Kinesin-like protein KA 100.0 1.2E-81 4.1E-86 720.7 25.6 321 76-403 57-402 (403)
27 3dc4_A Kinesin-like protein NO 100.0 7.7E-81 2.6E-85 700.9 24.1 312 72-403 16-340 (344)
28 4h1g_A Maltose binding protein 100.0 3.3E-76 1.1E-80 717.4 23.2 317 76-399 372-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 1.4E-30 4.7E-35 246.1 6.0 100 323-422 1-100 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 3.3E-28 1.1E-32 236.0 8.5 98 327-424 1-98 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 2.6E-24 8.9E-29 234.1 7.3 262 77-403 23-294 (298)
32 1i84_S Smooth muscle myosin he 96.3 0.0057 2E-07 79.2 8.5 36 133-169 150-186 (1184)
33 1i84_S Smooth muscle myosin he 95.9 0.0087 3E-07 77.5 7.6 45 992-1036 1114-1158(1184)
34 1c1g_A Tropomyosin; contractIl 94.8 4.1 0.00014 41.7 29.6 16 661-676 1-16 (284)
35 3ec2_A DNA replication protein 91.3 0.04 1.4E-06 54.9 0.2 51 119-170 6-56 (180)
36 2dfs_A Myosin-5A; myosin-V, in 90.9 0.44 1.5E-05 61.4 9.1 58 866-940 986-1043(1080)
37 2w58_A DNAI, primosome compone 90.7 0.062 2.1E-06 54.3 0.9 51 119-170 21-72 (202)
38 2qgz_A Helicase loader, putati 89.2 0.1 3.5E-06 57.6 1.2 50 120-170 121-170 (308)
39 3vfd_A Spastin; ATPase, microt 89.0 0.054 1.9E-06 61.1 -1.2 51 119-169 111-165 (389)
40 2dfs_A Myosin-5A; myosin-V, in 87.2 4.3 0.00015 52.4 14.2 92 913-1025 984-1077(1080)
41 3t15_A Ribulose bisphosphate c 86.0 0.33 1.1E-05 52.9 2.8 48 122-169 2-53 (293)
42 1c1g_A Tropomyosin; contractIl 83.1 43 0.0015 34.0 32.2 27 658-684 12-38 (284)
43 1jbk_A CLPB protein; beta barr 82.7 0.57 1.9E-05 45.3 2.6 30 141-170 32-61 (195)
44 3oja_B Anopheles plasmodium-re 81.7 6.6 0.00023 46.4 11.7 93 697-792 460-553 (597)
45 2bjv_A PSP operon transcriptio 81.5 0.49 1.7E-05 49.9 1.7 45 119-169 2-46 (265)
46 4b4t_K 26S protease regulatory 79.8 1.6 5.3E-05 50.9 5.3 74 120-193 169-264 (428)
47 4b4t_M 26S protease regulatory 79.6 1.5 5.2E-05 51.1 5.1 113 80-192 125-272 (434)
48 2p65_A Hypothetical protein PF 79.5 0.66 2.3E-05 45.0 1.8 30 141-170 32-61 (187)
49 3na7_A HP0958; flagellar bioge 79.1 32 0.0011 37.0 15.0 40 976-1015 93-132 (256)
50 2r62_A Cell division protease 78.9 0.43 1.5E-05 50.3 0.3 51 119-170 7-62 (268)
51 3te6_A Regulatory protein SIR3 78.3 0.62 2.1E-05 52.2 1.3 26 145-170 38-63 (318)
52 4etp_B Spindle POLE BODY-assoc 78.0 6.6 0.00023 44.1 9.2 240 77-380 58-310 (333)
53 3cf0_A Transitional endoplasmi 77.3 0.59 2E-05 50.9 0.8 50 120-169 12-66 (301)
54 3h4m_A Proteasome-activating n 76.9 0.48 1.6E-05 50.3 -0.1 51 119-169 13-68 (285)
55 3s4r_A Vimentin; alpha-helix, 76.6 16 0.00054 34.1 10.0 87 884-1036 5-91 (93)
56 1ixz_A ATP-dependent metallopr 76.5 0.68 2.3E-05 48.6 0.9 51 119-170 12-67 (254)
57 1l8q_A Chromosomal replication 76.4 0.84 2.9E-05 49.7 1.6 49 119-170 7-55 (324)
58 1g8p_A Magnesium-chelatase 38 75.4 0.6 2.1E-05 50.8 0.2 43 119-169 20-62 (350)
59 2k48_A Nucleoprotein; viral pr 75.0 13 0.00043 35.6 8.8 74 654-728 30-103 (107)
60 3na7_A HP0958; flagellar bioge 74.9 59 0.002 34.9 15.6 27 768-794 59-85 (256)
61 3bos_A Putative DNA replicatio 73.9 1.4 4.8E-05 44.6 2.4 45 120-170 25-70 (242)
62 4b4t_J 26S protease regulatory 73.3 3.4 0.00012 47.8 5.7 74 120-193 145-240 (405)
63 4b4t_L 26S protease subunit RP 73.1 4.6 0.00016 47.1 6.8 74 120-193 178-273 (437)
64 2v1u_A Cell division control p 72.9 0.7 2.4E-05 50.5 -0.1 40 130-170 22-62 (387)
65 3b9p_A CG5977-PA, isoform A; A 72.6 0.73 2.5E-05 49.3 -0.0 51 119-169 17-71 (297)
66 2qz4_A Paraplegin; AAA+, SPG7, 71.2 0.63 2.1E-05 48.5 -1.0 20 151-170 38-57 (262)
67 1d2n_A N-ethylmaleimide-sensit 71.1 2 6.8E-05 45.6 2.9 22 149-170 61-82 (272)
68 3d8b_A Fidgetin-like protein 1 71.0 0.78 2.7E-05 51.3 -0.3 51 120-170 81-135 (357)
69 1qde_A EIF4A, translation init 70.1 1.6 5.6E-05 44.4 1.9 23 144-168 45-67 (224)
70 2chg_A Replication factor C sm 70.1 1.8 6.1E-05 42.8 2.1 22 149-170 35-56 (226)
71 4b4t_I 26S protease regulatory 69.6 14 0.00047 43.3 9.6 112 82-193 128-274 (437)
72 1vec_A ATP-dependent RNA helic 69.2 1.9 6.5E-05 43.2 2.1 24 144-169 34-57 (206)
73 1iy2_A ATP-dependent metallopr 69.1 1.3 4.3E-05 47.4 0.8 51 119-170 36-91 (278)
74 1xwi_A SKD1 protein; VPS4B, AA 68.7 1.2 4.1E-05 49.2 0.6 51 120-170 9-63 (322)
75 2gxq_A Heat resistant RNA depe 68.5 1.9 6.4E-05 43.2 1.9 24 144-169 32-55 (207)
76 1lv7_A FTSH; alpha/beta domain 67.5 0.86 2.9E-05 47.9 -0.9 50 119-169 8-62 (257)
77 4b4t_H 26S protease regulatory 67.3 2.3 7.9E-05 50.1 2.6 74 120-193 206-301 (467)
78 3syl_A Protein CBBX; photosynt 66.5 1.5 5.2E-05 46.9 0.8 20 150-169 65-84 (309)
79 1fnn_A CDC6P, cell division co 66.3 2.5 8.6E-05 46.3 2.5 38 132-170 22-62 (389)
80 3dkp_A Probable ATP-dependent 65.0 2.4 8.2E-05 43.9 1.9 24 144-169 60-83 (245)
81 2z4s_A Chromosomal replication 64.3 2 6.7E-05 49.7 1.2 48 119-170 101-148 (440)
82 3uk6_A RUVB-like 2; hexameric 64.0 3 0.0001 45.8 2.5 46 120-170 41-88 (368)
83 3bor_A Human initiation factor 63.9 1.6 5.5E-05 45.4 0.4 24 144-169 61-84 (237)
84 2ic6_A Nucleocapsid protein; h 63.0 28 0.00095 31.7 8.1 69 659-728 5-73 (78)
85 3ly5_A ATP-dependent RNA helic 62.5 2.1 7.3E-05 45.5 1.0 25 143-169 84-108 (262)
86 2pl3_A Probable ATP-dependent 62.3 2.9 9.9E-05 43.1 1.9 24 144-169 56-79 (236)
87 1p9r_A General secretion pathw 61.4 3.1 0.00011 48.2 2.1 29 142-170 157-185 (418)
88 3eie_A Vacuolar protein sortin 61.0 1.7 5.9E-05 47.6 -0.1 50 120-169 15-68 (322)
89 2kjq_A DNAA-related protein; s 60.4 2.6 9E-05 41.4 1.2 18 153-170 37-54 (149)
90 3b6e_A Interferon-induced heli 60.2 1.6 5.5E-05 43.7 -0.4 23 146-170 44-66 (216)
91 1t6n_A Probable ATP-dependent 60.1 3.3 0.00011 42.0 1.9 24 144-169 45-68 (220)
92 2qby_B CDC6 homolog 3, cell di 60.1 2.9 0.0001 45.9 1.6 38 132-170 25-63 (384)
93 3iuy_A Probable ATP-dependent 59.4 3.4 0.00012 42.3 1.9 24 144-169 51-74 (228)
94 3oja_B Anopheles plasmodium-re 59.2 48 0.0016 39.1 11.8 23 1005-1027 548-570 (597)
95 2ic9_A Nucleocapsid protein; h 59.2 28 0.00094 32.9 7.6 70 658-728 4-73 (96)
96 3jvv_A Twitching mobility prot 59.0 3.4 0.00011 46.8 1.9 28 143-170 114-141 (356)
97 2qp9_X Vacuolar protein sortin 58.9 2 6.9E-05 48.1 0.0 50 120-169 48-101 (355)
98 3cve_A Homer protein homolog 1 58.7 19 0.00064 32.4 6.2 64 698-788 5-68 (72)
99 1wrb_A DJVLGB; RNA helicase, D 58.5 3.6 0.00012 42.9 1.9 24 144-169 54-77 (253)
100 2jee_A YIIU; FTSZ, septum, coi 58.5 7.2 0.00025 35.8 3.5 19 871-889 27-45 (81)
101 2qby_A CDC6 homolog 1, cell di 58.1 2.2 7.6E-05 46.4 0.2 21 150-170 43-63 (386)
102 3fmo_B ATP-dependent RNA helic 57.8 3.4 0.00012 45.0 1.6 27 143-169 122-148 (300)
103 3eiq_A Eukaryotic initiation f 57.3 4.2 0.00014 44.8 2.2 24 144-169 71-94 (414)
104 3fe2_A Probable ATP-dependent 56.6 3.8 0.00013 42.6 1.6 24 144-169 60-83 (242)
105 2x8a_A Nuclear valosin-contain 56.4 2.1 7.3E-05 46.2 -0.3 50 120-169 7-61 (274)
106 3co5_A Putative two-component 56.1 6.2 0.00021 38.0 3.0 19 152-170 27-45 (143)
107 2zan_A Vacuolar protein sortin 55.9 2.1 7.1E-05 49.5 -0.5 51 120-170 131-185 (444)
108 3llm_A ATP-dependent RNA helic 55.8 3.7 0.00013 42.7 1.4 25 143-169 69-93 (235)
109 2oxc_A Probable ATP-dependent 55.6 4.3 0.00015 41.8 1.9 23 145-169 56-78 (230)
110 2c9o_A RUVB-like 1; hexameric 55.5 5.7 0.0002 45.9 3.1 46 119-169 33-80 (456)
111 1njg_A DNA polymerase III subu 55.0 5.3 0.00018 39.7 2.3 18 153-170 46-63 (250)
112 3ber_A Probable ATP-dependent 54.4 4.7 0.00016 42.5 1.9 24 144-169 74-97 (249)
113 3hu3_A Transitional endoplasmi 54.1 3.1 0.00011 49.0 0.6 20 150-169 236-255 (489)
114 1u0j_A DNA replication protein 54.0 5.7 0.0002 43.5 2.6 31 140-170 89-122 (267)
115 4fi5_A Nucleoprotein; structur 53.7 45 0.0015 32.2 8.2 70 660-730 23-92 (113)
116 1ofh_A ATP-dependent HSL prote 53.4 5 0.00017 42.5 2.0 19 152-170 50-68 (310)
117 3iv1_A Tumor susceptibility ge 53.1 79 0.0027 28.8 9.3 58 413-488 12-69 (78)
118 1q0u_A Bstdead; DEAD protein, 52.7 3.3 0.00011 42.2 0.4 24 144-169 35-58 (219)
119 2eyu_A Twitching motility prot 51.9 4.9 0.00017 43.3 1.6 20 151-170 24-43 (261)
120 1iqp_A RFCS; clamp loader, ext 51.8 6.2 0.00021 42.1 2.4 22 149-170 43-64 (327)
121 3vkg_A Dynein heavy chain, cyt 51.8 2.8E+02 0.0096 40.3 18.8 26 143-169 1296-1321(3245)
122 1sxj_C Activator 1 40 kDa subu 51.7 5.6 0.00019 43.6 2.1 42 121-170 23-64 (340)
123 3fht_A ATP-dependent RNA helic 51.4 5.1 0.00018 44.0 1.7 27 143-169 55-81 (412)
124 2j0s_A ATP-dependent RNA helic 51.0 5.1 0.00018 44.3 1.6 24 144-169 68-91 (410)
125 3pey_A ATP-dependent RNA helic 50.7 5 0.00017 43.6 1.5 26 144-169 36-61 (395)
126 4fcw_A Chaperone protein CLPB; 50.1 5 0.00017 42.8 1.3 17 153-169 48-64 (311)
127 1gvn_B Zeta; postsegregational 50.1 11 0.00037 41.0 4.0 31 139-169 15-50 (287)
128 1sxj_D Activator 1 41 kDa subu 49.9 4.7 0.00016 43.6 1.1 28 143-170 49-76 (353)
129 3fmp_B ATP-dependent RNA helic 49.1 7 0.00024 44.7 2.4 26 143-168 122-147 (479)
130 3pxg_A Negative regulator of g 48.7 9.9 0.00034 44.2 3.6 42 121-170 178-219 (468)
131 3vkg_A Dynein heavy chain, cyt 48.6 2.8E+02 0.0095 40.3 18.0 19 150-168 904-922 (3245)
132 2z0m_A 337AA long hypothetical 48.2 6.1 0.00021 42.0 1.6 24 144-169 25-48 (337)
133 3n70_A Transport activator; si 48.2 4.9 0.00017 38.7 0.8 20 150-169 22-41 (145)
134 1s2m_A Putative ATP-dependent 47.9 6.4 0.00022 43.3 1.8 24 144-169 52-75 (400)
135 1hqc_A RUVB; extended AAA-ATPa 47.9 9.3 0.00032 41.0 3.0 20 150-169 36-55 (324)
136 3a7p_A Autophagy protein 16; c 47.7 56 0.0019 33.2 8.3 38 757-794 91-128 (152)
137 1tue_A Replication protein E1; 47.7 4.6 0.00016 43.0 0.6 27 144-170 48-76 (212)
138 3h1t_A Type I site-specific re 47.6 7.2 0.00025 46.1 2.3 28 142-170 189-216 (590)
139 2chq_A Replication factor C sm 47.2 5.9 0.0002 42.1 1.3 23 148-170 34-56 (319)
140 1w5s_A Origin recognition comp 47.1 7.3 0.00025 43.1 2.1 26 145-170 40-70 (412)
141 2fz4_A DNA repair protein RAD2 46.9 6.4 0.00022 41.4 1.5 24 145-170 103-126 (237)
142 2i4i_A ATP-dependent RNA helic 45.9 7 0.00024 43.2 1.7 23 145-169 47-69 (417)
143 3a7o_A Autophagy protein 16; c 45.8 56 0.0019 29.2 6.9 28 697-724 15-42 (75)
144 2r44_A Uncharacterized protein 45.5 4.6 0.00016 43.9 0.2 34 131-170 31-64 (331)
145 3cvf_A Homer-3, homer protein 45.2 23 0.00079 32.3 4.6 63 699-788 12-74 (79)
146 3m91_A Proteasome-associated A 45.0 17 0.00058 30.7 3.4 31 913-943 9-39 (51)
147 1cun_A Protein (alpha spectrin 45.0 2.4E+02 0.0081 28.1 12.9 59 657-715 31-94 (213)
148 3i00_A HIP-I, huntingtin-inter 44.6 1.8E+02 0.0062 28.3 11.1 24 409-432 12-35 (120)
149 2oap_1 GSPE-2, type II secreti 43.9 8.7 0.0003 45.5 2.2 21 148-170 258-278 (511)
150 3pfi_A Holliday junction ATP-d 43.8 11 0.00039 40.7 3.0 44 121-169 27-72 (338)
151 3t98_B Nucleoporin NUP58/NUP45 43.8 1.4E+02 0.0048 27.9 9.8 79 412-490 12-90 (93)
152 2v4h_A NF-kappa-B essential mo 43.1 69 0.0024 30.9 7.7 36 743-792 26-61 (110)
153 3u61_B DNA polymerase accessor 43.0 12 0.0004 40.5 2.9 19 152-170 48-66 (324)
154 1in4_A RUVB, holliday junction 42.2 11 0.00037 41.6 2.4 18 153-170 52-69 (334)
155 1go4_E MAD1 (mitotic arrest de 42.0 21 0.00073 33.9 4.0 69 865-936 13-91 (100)
156 2ewv_A Twitching motility prot 41.6 6.3 0.00021 44.6 0.5 20 151-170 135-154 (372)
157 4b3f_X DNA-binding protein smu 41.6 9 0.00031 46.2 1.9 27 143-170 197-223 (646)
158 1sxj_E Activator 1 40 kDa subu 41.4 7 0.00024 42.6 0.8 16 155-170 39-54 (354)
159 3mq7_A Bone marrow stromal ant 41.4 59 0.002 31.7 7.0 27 914-940 86-112 (121)
160 2ocy_A RAB guanine nucleotide 41.4 1.6E+02 0.0054 30.0 10.5 97 658-790 36-143 (154)
161 1xti_A Probable ATP-dependent 41.3 9 0.00031 41.8 1.7 25 143-169 38-62 (391)
162 2ce7_A Cell division protein F 41.2 5.3 0.00018 47.0 -0.2 50 119-169 12-66 (476)
163 3pvs_A Replication-associated 41.1 7.5 0.00026 45.2 1.0 27 143-169 41-67 (447)
164 3i5x_A ATP-dependent RNA helic 40.8 11 0.00037 44.0 2.4 27 143-169 102-128 (563)
165 1jr3_A DNA polymerase III subu 40.8 14 0.00049 40.2 3.1 20 151-170 37-56 (373)
166 3oiy_A Reverse gyrase helicase 40.4 9.9 0.00034 42.4 1.8 24 143-168 29-52 (414)
167 1rif_A DAR protein, DNA helica 40.1 6.7 0.00023 41.8 0.4 22 147-170 125-146 (282)
168 1n0w_A DNA repair protein RAD5 40.1 9.6 0.00033 38.9 1.6 29 142-170 11-42 (243)
169 3fho_A ATP-dependent RNA helic 39.9 9.6 0.00033 44.4 1.7 34 128-169 142-175 (508)
170 2dhr_A FTSH; AAA+ protein, hex 39.6 4.4 0.00015 48.0 -1.2 50 119-169 27-81 (499)
171 1sxj_B Activator 1 37 kDa subu 38.9 10 0.00035 40.2 1.6 22 149-170 39-60 (323)
172 2p5t_B PEZT; postsegregational 38.8 14 0.00047 39.0 2.5 36 134-169 13-49 (253)
173 1hv8_A Putative ATP-dependent 38.8 10 0.00034 40.8 1.5 25 144-169 37-61 (367)
174 3hnw_A Uncharacterized protein 38.6 51 0.0018 32.8 6.4 35 864-898 96-130 (138)
175 1ci6_A Transcription factor AT 38.5 31 0.0011 29.9 4.3 39 869-907 21-59 (63)
176 1qvr_A CLPB protein; coiled co 38.4 7.8 0.00027 48.4 0.6 42 121-170 168-209 (854)
177 4a2p_A RIG-I, retinoic acid in 37.8 12 0.0004 43.0 1.9 24 144-169 16-39 (556)
178 2v71_A Nuclear distribution pr 37.6 3.8E+02 0.013 28.1 13.4 83 914-1014 89-171 (189)
179 4emc_A Monopolin complex subun 37.5 28 0.00095 36.5 4.4 30 763-792 28-57 (190)
180 1fuu_A Yeast initiation factor 36.9 7.7 0.00026 42.3 0.2 24 144-169 52-75 (394)
181 1um8_A ATP-dependent CLP prote 36.8 11 0.00037 41.9 1.4 18 152-169 72-89 (376)
182 2w0m_A SSO2452; RECA, SSPF, un 36.6 12 0.00041 37.6 1.6 29 142-170 10-41 (235)
183 2v66_B Nuclear distribution pr 36.5 57 0.0019 31.5 6.1 105 874-1006 6-110 (111)
184 1w36_D RECD, exodeoxyribonucle 36.0 11 0.00037 45.5 1.3 19 152-170 164-182 (608)
185 2k48_A Nucleoprotein; viral pr 35.9 71 0.0024 30.6 6.4 68 701-797 36-103 (107)
186 3tbk_A RIG-I helicase domain; 35.8 13 0.00045 42.4 1.9 24 144-169 13-36 (555)
187 3ryc_E Stathmin-4; alpha-tubul 35.8 1.4E+02 0.005 29.9 9.0 63 973-1035 43-122 (143)
188 3r6n_A Desmoplakin; spectrin r 35.4 1.5E+02 0.0053 34.6 10.8 132 663-796 130-269 (450)
189 3o0z_A RHO-associated protein 34.7 2.9E+02 0.0099 28.5 11.3 71 872-942 77-151 (168)
190 2cvh_A DNA repair and recombin 34.6 13 0.00045 37.2 1.5 29 142-170 7-38 (220)
191 1ojl_A Transcriptional regulat 34.5 16 0.00055 39.9 2.3 20 150-169 23-42 (304)
192 2db3_A ATP-dependent RNA helic 34.5 16 0.00056 41.4 2.5 24 144-169 87-110 (434)
193 3c8u_A Fructokinase; YP_612366 33.6 21 0.00073 36.2 2.9 29 141-169 9-39 (208)
194 3b85_A Phosphate starvation-in 33.3 16 0.00055 38.0 2.0 26 142-169 14-39 (208)
195 3cf2_A TER ATPase, transitiona 33.3 20 0.00068 45.0 3.0 50 120-169 201-255 (806)
196 2v1x_A ATP-dependent DNA helic 33.3 22 0.00074 42.8 3.3 24 144-169 53-76 (591)
197 3sqw_A ATP-dependent RNA helic 33.1 17 0.00059 42.9 2.4 27 143-169 51-77 (579)
198 2ke4_A CDC42-interacting prote 33.1 1.3E+02 0.0044 28.4 7.8 70 697-795 19-88 (98)
199 2fwr_A DNA repair protein RAD2 33.0 14 0.00049 42.0 1.6 23 145-169 103-125 (472)
200 1u4q_A Spectrin alpha chain, b 33.0 3.9E+02 0.013 28.3 12.9 140 658-797 35-216 (322)
201 3upu_A ATP-dependent DNA helic 32.9 19 0.00064 41.5 2.6 37 129-170 27-63 (459)
202 3nmd_A CGMP dependent protein 32.3 32 0.0011 30.9 3.4 48 741-788 19-66 (72)
203 4a74_A DNA repair and recombin 32.2 16 0.00056 36.7 1.7 29 142-170 12-43 (231)
204 4gl2_A Interferon-induced heli 31.9 15 0.00053 43.9 1.7 25 144-170 16-40 (699)
205 1u5p_A Spectrin alpha chain, b 31.9 3.2E+02 0.011 27.4 11.4 55 657-711 34-93 (216)
206 1wp9_A ATP-dependent RNA helic 31.9 14 0.00049 40.6 1.4 25 143-170 17-41 (494)
207 3hws_A ATP-dependent CLP prote 31.8 10 0.00035 42.0 0.2 18 152-169 51-68 (363)
208 3lw7_A Adenylate kinase relate 31.7 13 0.00046 35.2 0.9 16 154-169 3-18 (179)
209 3htk_A Structural maintenance 31.6 1.3E+02 0.0045 25.1 7.0 56 657-718 3-58 (60)
210 1rz3_A Hypothetical protein rb 31.5 22 0.00076 35.9 2.6 18 152-169 22-39 (201)
211 1ypw_A Transitional endoplasmi 31.5 17 0.00058 45.4 2.0 51 119-169 200-255 (806)
212 3nmd_A CGMP dependent protein 31.4 54 0.0019 29.5 4.6 30 765-794 22-51 (72)
213 3bas_A Myosin heavy chain, str 31.4 3.1E+02 0.01 25.1 10.3 77 400-488 3-79 (89)
214 2gk6_A Regulator of nonsense t 31.3 15 0.00052 44.2 1.6 18 153-170 196-213 (624)
215 2jlq_A Serine protease subunit 30.8 15 0.00053 42.1 1.4 25 144-169 12-36 (451)
216 3nbx_X ATPase RAVA; AAA+ ATPas 30.5 22 0.00076 42.1 2.7 26 142-169 33-58 (500)
217 3pxi_A Negative regulator of g 30.3 26 0.0009 43.0 3.4 17 153-169 522-538 (758)
218 4gp7_A Metallophosphoesterase; 30.1 12 0.00042 37.0 0.4 18 153-170 10-27 (171)
219 3hnw_A Uncharacterized protein 30.1 1.2E+02 0.0043 30.0 7.6 68 872-939 69-136 (138)
220 3pxi_A Negative regulator of g 29.6 29 0.00099 42.6 3.6 42 121-170 178-219 (758)
221 2lw1_A ABC transporter ATP-bin 29.6 71 0.0024 29.1 5.3 33 695-727 17-49 (89)
222 2qag_C Septin-7; cell cycle, c 29.5 13 0.00046 42.9 0.6 23 147-169 26-48 (418)
223 1qvr_A CLPB protein; coiled co 29.3 29 0.00099 43.3 3.6 17 153-169 589-605 (854)
224 3ol1_A Vimentin; structural ge 29.3 2.7E+02 0.0093 26.7 9.7 50 869-928 67-116 (119)
225 1c4o_A DNA nucleotide excision 29.0 22 0.00074 43.4 2.4 40 126-170 7-46 (664)
226 3m91_A Proteasome-associated A 28.9 57 0.002 27.5 4.1 39 881-926 12-50 (51)
227 1r6b_X CLPA protein; AAA+, N-t 28.9 23 0.00078 43.4 2.5 29 142-170 197-225 (758)
228 1r6b_X CLPA protein; AAA+, N-t 28.7 29 0.00098 42.5 3.4 17 153-169 489-505 (758)
229 2ic6_A Nucleocapsid protein; h 28.5 1.1E+02 0.0039 27.8 6.3 68 701-797 6-73 (78)
230 3b9q_A Chloroplast SRP recepto 28.5 24 0.00083 38.8 2.4 18 153-170 101-118 (302)
231 2ykg_A Probable ATP-dependent 28.4 23 0.0008 42.3 2.5 24 144-169 22-45 (696)
232 4ag6_A VIRB4 ATPase, type IV s 28.4 12 0.00041 42.0 -0.0 19 152-170 35-53 (392)
233 4emc_A Monopolin complex subun 28.4 99 0.0034 32.4 6.7 26 767-792 11-36 (190)
234 3tr0_A Guanylate kinase, GMP k 28.1 14 0.00047 36.8 0.4 16 154-169 9-24 (205)
235 1wlq_A Geminin; coiled-coil; 2 28.0 50 0.0017 30.4 3.9 41 871-911 38-78 (83)
236 2v4h_A NF-kappa-B essential mo 28.0 1.7E+02 0.0057 28.3 7.6 21 413-433 39-59 (110)
237 4dci_A Uncharacterized protein 27.9 2.2E+02 0.0076 28.8 9.0 72 653-724 23-101 (150)
238 2dr3_A UPF0273 protein PH0284; 27.8 18 0.00062 36.8 1.2 27 144-170 12-41 (247)
239 1gm5_A RECG; helicase, replica 27.7 20 0.00068 44.8 1.7 27 143-169 380-406 (780)
240 3pe0_A Plectin; cytoskeleton, 27.6 3E+02 0.01 29.9 10.9 134 661-796 43-184 (283)
241 3swk_A Vimentin; cytoskeleton, 27.6 96 0.0033 28.4 5.8 30 914-943 1-30 (86)
242 2qnr_A Septin-2, protein NEDD5 27.4 14 0.00048 40.4 0.3 23 147-169 13-35 (301)
243 3tnu_B Keratin, type II cytosk 27.3 1.4E+02 0.0049 28.9 7.4 58 974-1034 44-101 (129)
244 3tnu_A Keratin, type I cytoske 27.3 1.9E+02 0.0066 28.0 8.4 59 973-1034 45-103 (131)
245 1sxj_A Activator 1 95 kDa subu 27.3 21 0.00073 41.8 1.8 19 152-170 77-95 (516)
246 2oto_A M protein; helical coil 27.2 4.7E+02 0.016 25.9 14.6 34 907-940 44-77 (155)
247 3edu_A Beta-I spectrin, spectr 27.0 5E+02 0.017 26.2 12.0 95 656-757 31-131 (218)
248 1e9r_A Conjugal transfer prote 26.5 12 0.00042 42.4 -0.4 19 152-170 53-71 (437)
249 3lfu_A DNA helicase II; SF1 he 26.5 16 0.00056 43.3 0.6 20 151-170 21-40 (647)
250 3e70_C DPA, signal recognition 26.2 41 0.0014 37.5 3.8 19 152-170 129-147 (328)
251 3tau_A Guanylate kinase, GMP k 26.2 18 0.00061 36.9 0.8 17 153-169 9-25 (208)
252 1ly1_A Polynucleotide kinase; 26.0 19 0.00064 34.8 0.9 16 153-168 3-18 (181)
253 3mq7_A Bone marrow stromal ant 26.0 1.9E+02 0.0065 28.2 7.7 46 672-719 45-90 (121)
254 1kgd_A CASK, peripheral plasma 25.7 16 0.00055 36.3 0.3 16 154-169 7-22 (180)
255 4fi5_A Nucleoprotein; structur 25.4 79 0.0027 30.6 4.9 69 700-798 22-91 (113)
256 2gza_A Type IV secretion syste 25.4 26 0.00088 39.4 1.9 21 148-170 173-193 (361)
257 1ykh_B RNA polymerase II holoe 25.3 3.1E+02 0.01 26.9 9.4 113 657-791 1-128 (132)
258 1zp6_A Hypothetical protein AT 25.2 16 0.00055 36.0 0.2 17 153-169 10-26 (191)
259 3sop_A Neuronal-specific septi 25.2 16 0.00056 39.4 0.3 19 151-169 1-19 (270)
260 2r8r_A Sensor protein; KDPD, P 25.1 15 0.00053 39.3 0.1 19 152-170 6-24 (228)
261 2oca_A DAR protein, ATP-depend 25.0 18 0.0006 41.7 0.5 35 126-170 112-146 (510)
262 3trf_A Shikimate kinase, SK; a 24.9 20 0.00069 35.1 0.9 15 154-168 7-21 (185)
263 1qhx_A CPT, protein (chloramph 24.9 20 0.00069 34.8 0.9 17 153-169 4-20 (178)
264 1zxa_A CGMP-dependent protein 24.7 78 0.0027 28.1 4.4 41 972-1012 10-50 (67)
265 3a00_A Guanylate kinase, GMP k 24.7 15 0.00053 36.6 -0.0 15 155-169 4-18 (186)
266 1uii_A Geminin; human, DNA rep 24.6 48 0.0017 30.5 3.2 36 872-907 47-82 (83)
267 3jsv_C NF-kappa-B essential mo 24.4 93 0.0032 29.3 5.1 34 869-902 59-92 (94)
268 2px0_A Flagellar biosynthesis 24.2 27 0.00093 38.2 1.8 18 153-170 106-123 (296)
269 3e1s_A Exodeoxyribonuclease V, 24.2 25 0.00084 42.2 1.6 25 144-170 198-222 (574)
270 2qen_A Walker-type ATPase; unk 24.0 30 0.001 36.9 2.1 18 153-170 32-49 (350)
271 2xzl_A ATP-dependent helicase 23.9 24 0.00083 44.1 1.5 18 153-170 376-393 (802)
272 3iij_A Coilin-interacting nucl 23.8 20 0.0007 35.1 0.7 17 153-169 12-28 (180)
273 2wjy_A Regulator of nonsense t 23.6 25 0.00087 43.9 1.6 18 153-170 372-389 (800)
274 2eqb_B RAB guanine nucleotide 23.3 4.8E+02 0.016 24.7 11.2 87 662-794 8-94 (97)
275 4a2q_A RIG-I, retinoic acid in 23.3 28 0.00097 42.9 1.9 24 144-169 257-280 (797)
276 1lkx_A Myosin IE heavy chain; 23.2 40 0.0014 41.7 3.2 36 134-170 76-112 (697)
277 2dgc_A Protein (GCN4); basic d 23.2 60 0.0021 28.1 3.4 30 914-943 31-60 (63)
278 2ehv_A Hypothetical protein PH 23.2 19 0.00065 36.7 0.3 18 153-170 31-48 (251)
279 3viq_B Mating-type switching p 23.2 1.8E+02 0.006 27.0 6.6 71 696-780 4-74 (85)
280 1rj9_A FTSY, signal recognitio 23.2 21 0.00072 39.3 0.7 18 153-170 103-120 (304)
281 1odf_A YGR205W, hypothetical 3 23.1 38 0.0013 37.0 2.7 36 134-169 11-48 (290)
282 2j41_A Guanylate kinase; GMP, 23.1 20 0.00067 35.7 0.4 16 154-169 8-23 (207)
283 2ic9_A Nucleocapsid protein; h 23.1 1.5E+02 0.005 28.1 6.1 67 702-797 7-73 (96)
284 3s9g_A Protein hexim1; cyclin 23.0 1.7E+02 0.0058 27.8 6.5 31 912-942 64-94 (104)
285 1lq7_A Alpha3W; three helix bu 22.9 1.4E+02 0.0046 25.5 5.3 51 661-711 11-66 (67)
286 2og2_A Putative signal recogni 22.9 36 0.0012 38.5 2.5 18 153-170 158-175 (359)
287 3lnc_A Guanylate kinase, GMP k 22.8 24 0.00082 36.3 1.0 16 154-169 29-44 (231)
288 4a2w_A RIG-I, retinoic acid in 22.8 26 0.00088 44.4 1.5 23 145-169 258-280 (936)
289 1lvg_A Guanylate kinase, GMP k 22.8 17 0.00059 36.9 -0.1 17 154-170 6-22 (198)
290 1ye8_A Protein THEP1, hypothet 22.8 18 0.00063 36.5 0.1 15 155-169 3-17 (178)
291 3a2a_A Voltage-gated hydrogen 22.4 1.9E+02 0.0065 24.8 6.0 36 455-490 15-50 (58)
292 2dq0_A Seryl-tRNA synthetase; 22.2 2E+02 0.0068 33.7 8.6 65 658-732 44-108 (455)
293 2bdt_A BH3686; alpha-beta prot 22.1 21 0.00071 35.3 0.3 16 154-169 4-19 (189)
294 2lw1_A ABC transporter ATP-bin 22.0 3.2E+02 0.011 24.8 8.2 61 413-485 23-83 (89)
295 2b8t_A Thymidine kinase; deoxy 22.0 18 0.00062 38.3 -0.2 18 153-170 13-30 (223)
296 1w9i_A Myosin II heavy chain; 22.0 44 0.0015 41.8 3.2 35 134-169 154-189 (770)
297 3qne_A Seryl-tRNA synthetase, 21.9 2.2E+02 0.0074 33.8 8.8 66 657-732 45-110 (485)
298 1oyw_A RECQ helicase, ATP-depe 21.7 18 0.00063 42.5 -0.2 24 144-169 34-57 (523)
299 1j8m_F SRP54, signal recogniti 21.7 58 0.002 35.7 3.8 17 154-170 100-116 (297)
300 1lwu_C Fibrinogen gamma chain; 21.6 74 0.0025 35.9 4.6 52 739-792 3-56 (323)
301 2v26_A Myosin VI; calmodulin-b 21.5 45 0.0015 41.8 3.1 37 133-170 121-158 (784)
302 3kta_A Chromosome segregation 21.5 21 0.00072 35.0 0.2 16 154-169 28-43 (182)
303 2v6i_A RNA helicase; membrane, 21.4 28 0.00097 39.7 1.3 16 154-169 4-19 (431)
304 2orw_A Thymidine kinase; TMTK, 21.4 16 0.00054 37.1 -0.8 17 154-170 5-21 (184)
305 1kht_A Adenylate kinase; phosp 21.3 25 0.00085 34.3 0.7 17 153-169 4-20 (192)
306 1uaa_A REP helicase, protein ( 21.2 25 0.00086 42.4 0.9 20 151-170 14-33 (673)
307 1g8x_A Myosin II heavy chain f 21.1 44 0.0015 43.0 3.0 37 133-170 153-190 (1010)
308 1yke_B RNA polymerase II holoe 20.9 2.1E+02 0.0072 28.8 7.3 115 657-793 1-130 (151)
309 2yhs_A FTSY, cell division pro 20.9 41 0.0014 40.0 2.5 17 154-170 295-311 (503)
310 4a4z_A Antiviral helicase SKI2 20.9 41 0.0014 43.0 2.7 23 144-168 48-70 (997)
311 3kbt_A Beta-I spectrin, spectr 20.8 5.7E+02 0.019 27.2 11.4 130 658-797 142-277 (326)
312 2ycu_A Non muscle myosin 2C, a 20.8 47 0.0016 42.7 3.2 36 134-170 128-164 (995)
313 3vaa_A Shikimate kinase, SK; s 20.7 28 0.00095 35.0 0.9 16 154-169 27-42 (199)
314 2fna_A Conserved hypothetical 20.7 26 0.00089 37.4 0.7 18 153-170 31-48 (357)
315 1kag_A SKI, shikimate kinase I 20.7 26 0.00089 33.8 0.7 16 154-169 6-21 (173)
316 1moz_A ARL1, ADP-ribosylation 20.6 39 0.0013 32.4 1.9 28 142-169 7-35 (183)
317 1znw_A Guanylate kinase, GMP k 20.5 23 0.0008 35.9 0.3 16 154-169 22-37 (207)
318 3ghg_A Fibrinogen alpha chain; 20.2 1.7E+02 0.0057 35.1 7.2 59 700-760 67-125 (562)
319 3kb2_A SPBC2 prophage-derived 20.2 29 0.00099 33.2 0.9 16 154-169 3-18 (173)
320 1kk8_A Myosin heavy chain, str 20.1 46 0.0016 41.9 2.9 36 134-170 151-187 (837)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=2.3e-89 Score=775.40 Aligned_cols=345 Identities=41% Similarity=0.617 Sum_probs=291.6
Q ss_pred CCCCCCeeeeeecCCCCcccccCCCeEEEeeCC---CeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcC
Q 001118 74 SKSKENVMVTVRFRPLSPREVNKGDEIAWYADG---DYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQG 150 (1150)
Q Consensus 74 ~~~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~---~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~G 150 (1150)
.+.+++|+|+|||||+++.|...+...++..++ ...+.. ..+.|.||+||+++++|++||+.+++|+|+++|+|
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~---~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 83 (365)
T 2y65_A 7 IPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI---AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAG 83 (365)
T ss_dssp -CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred CCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE---CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCC
Confidence 345789999999999999998777655443332 222222 24689999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCceeecCCCC---CCCchhhHHHHHHHhhhcC-CCceEEEEEeeeeeecchhhccCCCCCCceEEE
Q 001118 151 INGTVFAYGVTSSGKTHTMHGEQK---SPGIIPLAVKDVFGIIQET-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRIR 226 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~G~~~---~~GIIPRal~dLF~~I~~~-~~~~f~V~VSylEIYNE~V~DLL~p~~~~L~Ir 226 (1150)
||+||||||||||||||||+|... .+|||||++++||..+... .+..|.|+|||+|||||+|+|||++....+.|+
T Consensus 84 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~ 163 (365)
T 2y65_A 84 YNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVH 163 (365)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEE
T ss_pred CceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEE
Confidence 999999999999999999999643 5699999999999999754 467899999999999999999999988899999
Q ss_pred eCCC-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeec
Q 001118 227 EDAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDL 305 (1150)
Q Consensus 227 Ed~~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDL 305 (1150)
+|+. |++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+.... ......|+|+||||
T Consensus 164 e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skL~lVDL 239 (365)
T 2y65_A 164 EDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE----NQKKLSGKLYLVDL 239 (365)
T ss_dssp ECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETT----TCCEEEEEEEEEEC
T ss_pred ECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecC----CCCEeEEEEEEEEC
Confidence 9985 689999999999999999999999999999999999999999999999999876432 23467899999999
Q ss_pred CCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHH
Q 001118 306 AGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEE 384 (1150)
Q Consensus 306 AGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eE 384 (1150)
||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+..+++|
T Consensus 240 AGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~E 319 (365)
T 2y65_A 240 AGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESE 319 (365)
T ss_dssp CCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHH
T ss_pred CCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHH
Confidence 99999 56899999999999999999999999999999877899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHccccccccccccccCHHHHHHHHHHHHHHHH
Q 001118 385 THNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLK 425 (1150)
Q Consensus 385 TLsTLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk 425 (1150)
|++||+||+|||.|+|+|.+|+..+.+.++++|++|++.|+
T Consensus 320 Tl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 320 TKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNA 360 (365)
T ss_dssp HHHHHHHHHHHTTCEEECCCEEECCSHHHHHC---------
T ss_pred HHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998889888988887665
No 2
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=6.7e-88 Score=779.61 Aligned_cols=331 Identities=37% Similarity=0.594 Sum_probs=277.4
Q ss_pred CCCCCeeeeeecCCCCcccccCCCeEEEeeCCC--e-EEecC---------------CCCceeEeeeeeeCC-------C
Q 001118 75 KSKENVMVTVRFRPLSPREVNKGDEIAWYADGD--Y-TVRNE---------------YNPSIAYGFDKVFGP-------A 129 (1150)
Q Consensus 75 ~~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~--~-~v~~~---------------~~~s~~F~FD~VF~~-------~ 129 (1150)
..+++|+|+|||||++++|...+..+++..++. . ++... ....+.|+||+||++ .
T Consensus 35 ~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~ 114 (443)
T 2owm_A 35 DPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHY 114 (443)
T ss_dssp CCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTC
T ss_pred CCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccC
Confidence 347899999999999999987776655544432 1 22111 113578999999976 4
Q ss_pred CcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcC----CCceEEEEEeee
Q 001118 130 TTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQET----PGREFLLRVSYL 205 (1150)
Q Consensus 130 atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~----~~~~f~V~VSyl 205 (1150)
++|++||+.+++|+|+++|+|||+||||||||||||||||+|+++++|||||++++||..|... ++..|.|+|||+
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~l 194 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYF 194 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEE
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999753 567999999999
Q ss_pred eeecchhhccCCCC-----CCceEEEeCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEE
Q 001118 206 EIYNEVINDLLDPT-----GQNLRIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTL 279 (1150)
Q Consensus 206 EIYNE~V~DLL~p~-----~~~L~IrEd~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI 279 (1150)
|||||+|+|||+|. ...|.|++|+ .|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|
T Consensus 195 EIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti 274 (443)
T 2owm_A 195 EVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI 274 (443)
T ss_dssp EEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEE
T ss_pred EEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEE
Confidence 99999999999873 2359999998 57999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCCcceEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCC-------------
Q 001118 280 TIESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKA------------- 345 (1150)
Q Consensus 280 ~V~~~~~~~~~~~~~v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~------------- 345 (1150)
+|.+.......+......|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++.
T Consensus 275 ~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~ 354 (443)
T 2owm_A 275 MLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGR 354 (443)
T ss_dssp EEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC----------------
T ss_pred EEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccccccccccccccc
Confidence 9987654333334456789999999999999 46899999999999999999999999999987542
Q ss_pred --------CcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHhHccccccccccccc
Q 001118 346 --------THIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNKI 407 (1150)
Q Consensus 346 --------~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLrFA~RAK~Iknk~~vN~i 407 (1150)
.|||||||||||||||+||||++|+|||||||+ +++||++||+||+|||+|+|+|.+|++
T Consensus 355 ~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 355 GRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp ---------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred ccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceeccc
Confidence 399999999999999999999999999999997 599999999999999999999999984
No 3
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=5.1e-88 Score=765.50 Aligned_cols=344 Identities=40% Similarity=0.607 Sum_probs=285.9
Q ss_pred CCCCCCCeeeeeecCCCCcccccCCCeEEEee--CCCeEEecCC-----CCceeEeeeeeeCCCCcchhHHHHHHHHHHH
Q 001118 73 TSKSKENVMVTVRFRPLSPREVNKGDEIAWYA--DGDYTVRNEY-----NPSIAYGFDKVFGPATTTRHVYDVAAQHVVN 145 (1150)
Q Consensus 73 ~~~~~~~VrV~VRVRPl~~~E~~~g~~v~~~~--d~~~~v~~~~-----~~s~~F~FD~VF~~~atQeeVYe~vv~plV~ 145 (1150)
....+++|+|+|||||+++.|...+...++.. +...+..... ...+.|.||+||+++++|++||+.+++|+|+
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~ 95 (372)
T 3b6u_A 16 FQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVD 95 (372)
T ss_dssp -----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHH
T ss_pred cCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHH
Confidence 34557899999999999999987776544433 2233333221 2357899999999999999999999999999
Q ss_pred HhhcCCCeEEEEeccCCCCCceeecCCC---CCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCCC-C
Q 001118 146 GAMQGINGTVFAYGVTSSGKTHTMHGEQ---KSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG-Q 221 (1150)
Q Consensus 146 ~vL~GyN~tIfAYGQTGSGKTyTM~G~~---~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~~-~ 221 (1150)
++|+|||+||||||||||||||||+|.. ..+|||||++++||..+...++..|.|+|||+|||||+|+|||++.. .
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 175 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTK 175 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTC
T ss_pred HHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCC
Confidence 9999999999999999999999999965 45799999999999999988889999999999999999999998864 5
Q ss_pred ceEEEeCCC-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEE
Q 001118 222 NLRIREDAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQL 300 (1150)
Q Consensus 222 ~L~IrEd~~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL 300 (1150)
.+.|++++. |++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++...+. .+...+..|+|
T Consensus 176 ~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~-~~~~~~~~skL 254 (372)
T 3b6u_A 176 RLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGL-DGENHIRVGKL 254 (372)
T ss_dssp CBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC------CCCEEEEEE
T ss_pred CceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCC-CCCcceEEEEE
Confidence 799999985 7999999999999999999999999999999999999999999999999998765432 22345788999
Q ss_pred EEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCC
Q 001118 301 NLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPAS 379 (1150)
Q Consensus 301 ~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~ 379 (1150)
+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+.
T Consensus 255 ~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~ 334 (372)
T 3b6u_A 255 NLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPAS 334 (372)
T ss_dssp EEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBG
T ss_pred EEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcc
Confidence 9999999999 568999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHccccccccccccccCHHHHHHHHH
Q 001118 380 SNSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQ 418 (1150)
Q Consensus 380 ~~~eETLsTLrFA~RAK~Iknk~~vN~i~d~~~li~~lq 418 (1150)
.+++||++||+||+|||+|+|+|.+|+... .++|++|+
T Consensus 335 ~~~~ETlsTLrfA~rak~I~n~~~~n~~~~-~~~~~~~~ 372 (372)
T 3b6u_A 335 YNVEETLTTLRYANRAKNIKNKPRVNEDPK-DALLREFQ 372 (372)
T ss_dssp GGHHHHHHHHHHHHHHTTCBCCCCCCC------------
T ss_pred cCHHHHHHHHHHHHHHhhccccceecCChH-HHHHHhcC
Confidence 999999999999999999999999998643 35666553
No 4
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.2e-87 Score=757.66 Aligned_cols=331 Identities=47% Similarity=0.731 Sum_probs=290.6
Q ss_pred CCCCeeeeeecCCCCcccccCCCe--EEEeeCCCeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCe
Q 001118 76 SKENVMVTVRFRPLSPREVNKGDE--IAWYADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGING 153 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~~--v~~~~d~~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~ 153 (1150)
..++|+|+|||||++.+|...+.. +.|..++..+... ...+.|.||+||+++++|++||+.+++|+|+++|+|||+
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~--~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~ 79 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV--DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNG 79 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET--TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCE
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC--CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 368999999999999999765543 4455555554433 345689999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCCC--CceEEEeCCC-
Q 001118 154 TVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPTG--QNLRIREDAQ- 230 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~~--~~L~IrEd~~- 230 (1150)
||||||||||||||||+|+++++|||||++++||..++..++..|.|+|||+|||||+|+|||++.. .++.|++|+.
T Consensus 80 tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~ 159 (349)
T 1t5c_A 80 TIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNR 159 (349)
T ss_dssp EEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTT
T ss_pred ceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCC
Confidence 9999999999999999999999999999999999999988889999999999999999999998753 5799999985
Q ss_pred CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCC-CCcceEEEEEEEeecCCCC
Q 001118 231 GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQ-GEEDVTLSQLNLIDLAGSE 309 (1150)
Q Consensus 231 Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~-~~~~v~~SkL~LVDLAGSE 309 (1150)
|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++....... .......|+|+||||||||
T Consensus 160 ~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSE 239 (349)
T 1t5c_A 160 NVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSE 239 (349)
T ss_dssp EEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGG
T ss_pred CEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCc
Confidence 699999999999999999999999999999999999999999999999999886543321 2335678999999999999
Q ss_pred C-CcccccchhcccccccchhHHHHHHHHHHhccCC-CCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHH
Q 001118 310 S-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEK-ATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHN 387 (1150)
Q Consensus 310 r-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k-~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLs 387 (1150)
| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+||||++|+|||||||+ +++||++
T Consensus 240 r~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETls 317 (349)
T 1t5c_A 240 RAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLT 317 (349)
T ss_dssp GTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHH
T ss_pred cccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHH
Confidence 9 5689999999999999999999999999999875 3699999999999999999999999999999997 5899999
Q ss_pred HHHHHhHccccccccccccccCH
Q 001118 388 TLKFAHRSKHVEIKASQNKIMDE 410 (1150)
Q Consensus 388 TLrFA~RAK~Iknk~~vN~i~d~ 410 (1150)
||+||+|||+|+|+|.+|+..+.
T Consensus 318 TL~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 318 ALQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp HHHHHHHHTTCCCCCCCCEEC--
T ss_pred HHHHHHHHhhcccCceeccCCCC
Confidence 99999999999999999997654
No 5
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=7.7e-88 Score=763.63 Aligned_cols=341 Identities=34% Similarity=0.528 Sum_probs=305.9
Q ss_pred CCCCeeeeeecCCCCcccccCCCeEEEeeCCCeEEec--CCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCe
Q 001118 76 SKENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRN--EYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGING 153 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~~--~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~ 153 (1150)
.+++|+|+|||||+++.|...+..+.+...+...+.. .....+.|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 3 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~ 81 (369)
T 3cob_A 3 MKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNV 81 (369)
T ss_dssp -CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEE
T ss_pred CCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCce
Confidence 4789999999999999998777666555555544432 22345789999999999999999999 68999999999999
Q ss_pred EEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCCC-ceEEEEEeeeeeecchhhccCCCCC---CceEEEeCC
Q 001118 154 TVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPG-REFLLRVSYLEIYNEVINDLLDPTG---QNLRIREDA 229 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~~-~~f~V~VSylEIYNE~V~DLL~p~~---~~L~IrEd~ 229 (1150)
||||||||||||||||+|++.++|||||++++||..+..... ..|.|+|||+|||||.|+|||+|.. ..+.|++|+
T Consensus 82 tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~~ 161 (369)
T 3cob_A 82 CIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDS 161 (369)
T ss_dssp EEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEECT
T ss_pred EEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEECC
Confidence 999999999999999999999999999999999999986654 6899999999999999999998753 579999998
Q ss_pred C-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCC
Q 001118 230 Q-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGS 308 (1150)
Q Consensus 230 ~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGS 308 (1150)
. |++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... ......|+|+|||||||
T Consensus 162 ~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skL~lVDLAGS 237 (369)
T 3cob_A 162 KGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ----TQAIARGKLSFVDLAGS 237 (369)
T ss_dssp TSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT----TCCEEEEEEEEEECCCS
T ss_pred CCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC----CCcEEEEEEEEEeCCCC
Confidence 5 689999999999999999999999999999999999999999999999999876442 34578899999999999
Q ss_pred CC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHH
Q 001118 309 ES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHN 387 (1150)
Q Consensus 309 Er-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLs 387 (1150)
|| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+||||++|+|||||||+..+++||++
T Consensus 238 Er~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~ 316 (369)
T 3cob_A 238 ERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHN 316 (369)
T ss_dssp SCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHH
T ss_pred CcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHH
Confidence 99 5689999999999999999999999999999864 799999999999999999999999999999999999999999
Q ss_pred HHHHHhHccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 388 TLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQQLK 432 (1150)
Q Consensus 388 TLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk 432 (1150)
||+||+|||+|+|+|.+|... ++|..||++|..++
T Consensus 317 TLrfA~rak~i~~~~~~n~~~----------~ei~~L~~~l~~~~ 351 (369)
T 3cob_A 317 SLTYASRVRSIVNDPSKNVSS----------KEVARLKKLVSYWK 351 (369)
T ss_dssp HHHHHHHHHTCBCCCCCCEEC----------HHHHHHHHHTTCC-
T ss_pred HHHHHHHHhhcccCCcccCCH----------HHHHHHHHHHHHHH
Confidence 999999999999999999875 45666666665544
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.8e-88 Score=766.48 Aligned_cols=348 Identities=34% Similarity=0.499 Sum_probs=256.4
Q ss_pred CCCCCCCeeeeeecCCCCcccccCCCeEEE-eeCCCeEEe-cC--CCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhh
Q 001118 73 TSKSKENVMVTVRFRPLSPREVNKGDEIAW-YADGDYTVR-NE--YNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAM 148 (1150)
Q Consensus 73 ~~~~~~~VrV~VRVRPl~~~E~~~g~~v~~-~~d~~~~v~-~~--~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL 148 (1150)
.....++|+|+|||||+++.|...+...++ ..++..+.. .. ......|.||+||+++++|++||+.+++|+|+++|
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l 95 (388)
T 3bfn_A 16 FQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLL 95 (388)
T ss_dssp SSSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHT
T ss_pred ccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhh
Confidence 345678999999999999999765543332 233332222 11 12356899999999999999999999999999999
Q ss_pred cCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhc----CCCceEEEEEeeeeeecchhhccCCCCCCceE
Q 001118 149 QGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQE----TPGREFLLRVSYLEIYNEVINDLLDPTGQNLR 224 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~----~~~~~f~V~VSylEIYNE~V~DLL~p~~~~L~ 224 (1150)
+|||+||||||||||||||||+|++.++|||||++++||..+.. .....|.|+|||+|||||+|+|||+|....+.
T Consensus 96 ~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~ 175 (388)
T 3bfn_A 96 EGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLV 175 (388)
T ss_dssp TTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCC
T ss_pred cCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCce
Confidence 99999999999999999999999999999999999999999974 34568999999999999999999999988999
Q ss_pred EEeCCC-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEe
Q 001118 225 IREDAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLI 303 (1150)
Q Consensus 225 IrEd~~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LV 303 (1150)
|++|+. |++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+..... ......|+|+||
T Consensus 176 ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~---~~~~~~skL~lV 252 (388)
T 3bfn_A 176 IREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLA---PFRQREGKLYLI 252 (388)
T ss_dssp CEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESST---TCCEEEEEEEEE
T ss_pred EEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCC---CCceeEEEEEEE
Confidence 999985 6899999999999999999999999999999999999999999999999998764321 233578999999
Q ss_pred ecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCH
Q 001118 304 DLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNS 382 (1150)
Q Consensus 304 DLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~ 382 (1150)
||||||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+||||++|+|||||||+..++
T Consensus 253 DLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~ 331 (388)
T 3bfn_A 253 DLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFY 331 (388)
T ss_dssp ECCCTTC--------------CCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGH
T ss_pred ECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccH
Confidence 9999999 5689999999999999999999999999999865 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHccccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 001118 383 EETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQKEITFLKQELQ 429 (1150)
Q Consensus 383 eETLsTLrFA~RAK~Iknk~~vN~i~d~~~li~~lqkEI~~Lk~EL~ 429 (1150)
+||++||+||+|||.|+|+|.+|+..+..+++ ++..++++|.
T Consensus 332 ~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l~-----~~k~~~~~l~ 373 (388)
T 3bfn_A 332 LDTVSALNFAARSKEVINRPFTNESLQPHALG-----PVKLSQKELL 373 (388)
T ss_dssp HHHHHHHHHHCSEEEEC------------------------------
T ss_pred HHHHHHHHHHHHHhhCcCcCcccCCCCHHHHH-----HHHHHHHHhh
Confidence 99999999999999999999999988776542 3444455554
No 7
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=3.8e-87 Score=754.95 Aligned_cols=332 Identities=39% Similarity=0.602 Sum_probs=302.6
Q ss_pred CCCCeeeeeecCCCCcccccCCCeEEEee-CCCeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeE
Q 001118 76 SKENVMVTVRFRPLSPREVNKGDEIAWYA-DGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGT 154 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~~v~~~~-d~~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~t 154 (1150)
..++|+|+|||||+++.|...+...++.. +..............|.||+||+++++|++||+.+++|+|+++|+|||+|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t 83 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT 83 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcce
Confidence 46899999999999999987776544443 34444444445567899999999999999999999999999999999999
Q ss_pred EEEeccCCCCCceeecCC----CCCCCchhhHHHHHHHhhhcC-CCceEEEEEeeeeeecchhhccCCCCCCceEEEeCC
Q 001118 155 VFAYGVTSSGKTHTMHGE----QKSPGIIPLAVKDVFGIIQET-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDA 229 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~G~----~~~~GIIPRal~dLF~~I~~~-~~~~f~V~VSylEIYNE~V~DLL~p~~~~L~IrEd~ 229 (1150)
|||||||||||||||+|+ +..+|||||++++||..|... .+..|.|+|||+|||||+|+|||+|....+.|++++
T Consensus 84 ifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~ 163 (355)
T 1goj_A 84 VFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEK 163 (355)
T ss_dssp EEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEET
T ss_pred EEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEEcC
Confidence 999999999999999996 456899999999999999754 456899999999999999999999998899999998
Q ss_pred -CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCC
Q 001118 230 -QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGS 308 (1150)
Q Consensus 230 -~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGS 308 (1150)
.|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+.... ......|+|+|||||||
T Consensus 164 ~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skL~lVDLAGS 239 (355)
T 1goj_A 164 NRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE----TGSAKSGQLFLVDLAGS 239 (355)
T ss_dssp TTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETT----TTEEEEEEEEEEECCCC
T ss_pred CCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccC----CCceeeeEEEEEECCCC
Confidence 4799999999999999999999999999999999999999999999999999876432 24567899999999999
Q ss_pred CC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHH
Q 001118 309 ES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHN 387 (1150)
Q Consensus 309 Er-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLs 387 (1150)
|| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+..+++||++
T Consensus 240 Er~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~ 319 (355)
T 1goj_A 240 EKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLS 319 (355)
T ss_dssp SCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHH
T ss_pred CcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHH
Confidence 99 56899999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred HHHHHhHccccccccccccccCHH
Q 001118 388 TLKFAHRSKHVEIKASQNKIMDEK 411 (1150)
Q Consensus 388 TLrFA~RAK~Iknk~~vN~i~d~~ 411 (1150)
||+||+|||.|+|+|.+|+..+..
T Consensus 320 TL~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 320 TLRFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp HHHHHHHHHTCBCCCCCCSSSSCS
T ss_pred HHHHHHHHhhccCCceeCCCCCHH
Confidence 999999999999999999876653
No 8
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=3.3e-87 Score=754.09 Aligned_cols=329 Identities=39% Similarity=0.614 Sum_probs=271.1
Q ss_pred CCCeeeeeecCCCCcccccCCCeEEEee--CCCeEEecC----------CCCceeEeeeeeeCCCCcchhHHHHHHHHHH
Q 001118 77 KENVMVTVRFRPLSPREVNKGDEIAWYA--DGDYTVRNE----------YNPSIAYGFDKVFGPATTTRHVYDVAAQHVV 144 (1150)
Q Consensus 77 ~~~VrV~VRVRPl~~~E~~~g~~v~~~~--d~~~~v~~~----------~~~s~~F~FD~VF~~~atQeeVYe~vv~plV 144 (1150)
.++|+|+|||||++++|...+...++.. +...+.... ....+.|.||+||+++++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 5799999999999999987766443332 223333222 1235689999999999999999999999999
Q ss_pred HHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhh-cCCCceEEEEEeeeeeecchhhccCCCCCCce
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQ-ETPGREFLLRVSYLEIYNEVINDLLDPTGQNL 223 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~-~~~~~~f~V~VSylEIYNE~V~DLL~p~~~~L 223 (1150)
+++|+|||+||||||||||||||||+|++.++|||||++++||..+. ...+..|.|+|||+|||||+|+|||++ ...+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~-~~~l 161 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN-NTKL 161 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT-EEEE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC-CcCc
Confidence 99999999999999999999999999999999999999999999997 455689999999999999999999985 4579
Q ss_pred EEEeCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEE
Q 001118 224 RIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNL 302 (1150)
Q Consensus 224 ~IrEd~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~L 302 (1150)
.|++|+ .|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++.... .+......|+|+|
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~--~~~~~~~~skl~l 239 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVI--ENKEVIRVGKLNL 239 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC------CEEEEEEEEE
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeecc--CCCccEEEEEEEE
Confidence 999998 4799999999999999999999999999999999999999999999999999876543 2234567899999
Q ss_pred eecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCC
Q 001118 303 IDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSN 381 (1150)
Q Consensus 303 VDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~ 381 (1150)
|||||||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+||||++|+|||||||+..+
T Consensus 240 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~ 318 (350)
T 2vvg_A 240 VDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTN 318 (350)
T ss_dssp EECCCCCC---------------CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred EeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCcccc
Confidence 99999999 5689999999999999999999999999999875 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHccccccccccccccC
Q 001118 382 SEETHNTLKFAHRSKHVEIKASQNKIMD 409 (1150)
Q Consensus 382 ~eETLsTLrFA~RAK~Iknk~~vN~i~d 409 (1150)
++||++||+||+|||+|+|+|.+|+..+
T Consensus 319 ~~ETl~TL~fA~rak~i~n~~~~n~~~~ 346 (350)
T 2vvg_A 319 YDETMSTLRYADRAKQIKNKPRINEDPK 346 (350)
T ss_dssp HHHHHHHHHHHHHHTTCBCCCCCCBSCT
T ss_pred HHHHHHHHHHHHHHhhccccceecCCch
Confidence 9999999999999999999999998654
No 9
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=8.1e-87 Score=755.11 Aligned_cols=330 Identities=37% Similarity=0.588 Sum_probs=280.3
Q ss_pred CCCeeeeeecCCCCcccccCCCeEEEeeCCCeEEecCC----CCceeEeeeeeeCCC--------CcchhHHHHHHHHHH
Q 001118 77 KENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEY----NPSIAYGFDKVFGPA--------TTTRHVYDVAAQHVV 144 (1150)
Q Consensus 77 ~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~~~~----~~s~~F~FD~VF~~~--------atQeeVYe~vv~plV 144 (1150)
.++|+|+|||||++.+|...+..+++..++..++.... .....|.||+||++. ++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 46899999999999999887776666666655544322 235789999999987 899999999999999
Q ss_pred HHhhcCCCeEEEEeccCCCCCceeecCCC--CCCCchhhHHHHHHHhhhcC--CCceEEEEEeeeeeecchhhccCCCCC
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHTMHGEQ--KSPGIIPLAVKDVFGIIQET--PGREFLLRVSYLEIYNEVINDLLDPTG 220 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyTM~G~~--~~~GIIPRal~dLF~~I~~~--~~~~f~V~VSylEIYNE~V~DLL~p~~ 220 (1150)
+++|+|||+||||||||||||||||+|++ .++|||||++++||..|+.. .+..|.|+|||+|||||+|+|||+|..
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 99999999999999999999999999984 57899999999999999764 356899999999999999999999864
Q ss_pred -CceEEEeCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEE
Q 001118 221 -QNLRIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLS 298 (1150)
Q Consensus 221 -~~L~IrEd~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~S 298 (1150)
..+.|++++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.......+......|
T Consensus 163 ~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s 242 (366)
T 2zfi_A 163 KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242 (366)
T ss_dssp CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEE
T ss_pred CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEe
Confidence 579999998 579999999999999999999999999999999999999999999999999987654433333456789
Q ss_pred EEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccC-----------CCCcccCCCchhhhhhcccCCCC
Q 001118 299 QLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDE-----------KATHIPYRDSKLTRLLQSSLSGH 366 (1150)
Q Consensus 299 kL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~-----------k~~hIPYRDSKLTrLLqDSLGGN 366 (1150)
+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+||||
T Consensus 243 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGn 322 (366)
T 2zfi_A 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGN 322 (366)
T ss_dssp EEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTT
T ss_pred EEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCC
Confidence 999999999999 468999999999999999999999999999863 35799999999999999999999
Q ss_pred ccceeEEeeCCCCCCHHHHHHHHHHHhHcccccccccccc
Q 001118 367 GRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNK 406 (1150)
Q Consensus 367 skT~mIatISPs~~~~eETLsTLrFA~RAK~Iknk~~vN~ 406 (1150)
++|+|||||||+..+++||++||+||+|||+|+++|.++.
T Consensus 323 skt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 323 SRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp CEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred ceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 9999999999999999999999999999999999999875
No 10
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.1e-86 Score=752.34 Aligned_cols=330 Identities=40% Similarity=0.637 Sum_probs=274.4
Q ss_pred CCCCCCeeeeeecCCCCcccccCCCeEEEeeC--CCeE-Eec----CCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHH
Q 001118 74 SKSKENVMVTVRFRPLSPREVNKGDEIAWYAD--GDYT-VRN----EYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNG 146 (1150)
Q Consensus 74 ~~~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d--~~~~-v~~----~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~ 146 (1150)
+..+++|+|+|||||++..|...+...++..+ ...+ +.. .....+.|.||+||+++++|++||+.+++|+|++
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 83 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDE 83 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHH
Confidence 34578999999999999999876655443332 2222 221 1123468999999999999999999999999999
Q ss_pred hhcCCCeEEEEeccCCCCCceeecCCCC-----------CCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhcc
Q 001118 147 AMQGINGTVFAYGVTSSGKTHTMHGEQK-----------SPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDL 215 (1150)
Q Consensus 147 vL~GyN~tIfAYGQTGSGKTyTM~G~~~-----------~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DL 215 (1150)
+|+|||+||||||||||||||||+|++. .+|||||++++||..+.. .+..|.|+|||+|||||+|+||
T Consensus 84 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DL 162 (359)
T 1x88_A 84 VIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDL 162 (359)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEET
T ss_pred HhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeeh
Confidence 9999999999999999999999999754 369999999999999975 5688999999999999999999
Q ss_pred CCCCC---CceEEEeCC---CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCC
Q 001118 216 LDPTG---QNLRIREDA---QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGEN 289 (1150)
Q Consensus 216 L~p~~---~~L~IrEd~---~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~ 289 (1150)
|+|.. ..+.|++++ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.......
T Consensus 163 L~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~- 241 (359)
T 1x88_A 163 LNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI- 241 (359)
T ss_dssp TCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECT-
T ss_pred hcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccC-
Confidence 98864 469999997 47999999999999999999999999999999999999999999999999998653321
Q ss_pred CCCcceEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCcc
Q 001118 290 QGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGR 368 (1150)
Q Consensus 290 ~~~~~v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNsk 368 (1150)
.+......|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++
T Consensus 242 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnsk 320 (359)
T 1x88_A 242 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER-TPHVPYRESKLTRILQDSLGGRTR 320 (359)
T ss_dssp TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGSSSSSE
T ss_pred CCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcC-CCCCccccchHHHHHHHHhCCCCe
Confidence 223456789999999999999 568999999999999999999999999999985 489999999999999999999999
Q ss_pred ceeEEeeCCCCCCHHHHHHHHHHHhHcccccccccccc
Q 001118 369 ISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNK 406 (1150)
Q Consensus 369 T~mIatISPs~~~~eETLsTLrFA~RAK~Iknk~~vN~ 406 (1150)
|+|||||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 321 t~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 321 TSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 99999999999999999999999999999999999996
No 11
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=4.1e-86 Score=738.95 Aligned_cols=315 Identities=44% Similarity=0.678 Sum_probs=286.8
Q ss_pred CCCCCeeeeeecCCCCcccccCCCeEEEe-eCCCeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCe
Q 001118 75 KSKENVMVTVRFRPLSPREVNKGDEIAWY-ADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGING 153 (1150)
Q Consensus 75 ~~~~~VrV~VRVRPl~~~E~~~g~~v~~~-~d~~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~ 153 (1150)
..+++|+|+|||||+++.|...+...++. .+...++. ..+.|.||+||+++++|++||+.+++|+|+++++|||+
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~----~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~ 79 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI----ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNG 79 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEE----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEE----CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeE
Confidence 34789999999999999998776654433 33344433 24689999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCceeecCCCCC---CCchhhHHHHHHHhhhc-CCCceEEEEEeeeeeecchhhccCCCCCCceEEEeCC
Q 001118 154 TVFAYGVTSSGKTHTMHGEQKS---PGIIPLAVKDVFGIIQE-TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDA 229 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~G~~~~---~GIIPRal~dLF~~I~~-~~~~~f~V~VSylEIYNE~V~DLL~p~~~~L~IrEd~ 229 (1150)
||||||||||||||||+|+..+ +|||||++++||..+.. .++..|.|+|||+|||||+|+|||++....+.|++++
T Consensus 80 tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~ 159 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDK 159 (325)
T ss_dssp EEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECT
T ss_pred EEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEECC
Confidence 9999999999999999997544 59999999999999975 4567999999999999999999999988899999998
Q ss_pred C-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecCCC
Q 001118 230 Q-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLAGS 308 (1150)
Q Consensus 230 ~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLAGS 308 (1150)
. |++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... ......|+|+|||||||
T Consensus 160 ~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skl~lVDLAGS 235 (325)
T 1bg2_A 160 NRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ----TEQKLSGKLYLVDLAGS 235 (325)
T ss_dssp TSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETT----TCCEEEEEEEEEECCCS
T ss_pred CCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecC----CCcEEEEEEEEEECCCC
Confidence 5 689999999999999999999999999999999999999999999999999876432 33467899999999999
Q ss_pred CC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHH
Q 001118 309 ES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHN 387 (1150)
Q Consensus 309 Er-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLs 387 (1150)
|| .++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++|+|||||||+..+++||++
T Consensus 236 Er~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~ 314 (325)
T 1bg2_A 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKS 314 (325)
T ss_dssp CCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHH
T ss_pred CcccccCCccccchHHHHHHHHHHHHHHHHHHHHcC-CCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHH
Confidence 99 568999999999999999999999999999986 4799999999999999999999999999999999999999999
Q ss_pred HHHHHhHcccc
Q 001118 388 TLKFAHRSKHV 398 (1150)
Q Consensus 388 TLrFA~RAK~I 398 (1150)
||+||+|||+|
T Consensus 315 TL~fa~rak~I 325 (325)
T 1bg2_A 315 TLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHTSCCC
T ss_pred HHHHHHHhccC
Confidence 99999999987
No 12
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=7.7e-86 Score=744.49 Aligned_cols=323 Identities=37% Similarity=0.574 Sum_probs=258.8
Q ss_pred CCCCCCeeeeeecCCCCcccccCCCeEEEe-eCCCeEEecC---------------------CCCceeEeeeeeeCCCCc
Q 001118 74 SKSKENVMVTVRFRPLSPREVNKGDEIAWY-ADGDYTVRNE---------------------YNPSIAYGFDKVFGPATT 131 (1150)
Q Consensus 74 ~~~~~~VrV~VRVRPl~~~E~~~g~~v~~~-~d~~~~v~~~---------------------~~~s~~F~FD~VF~~~at 131 (1150)
++.+++|+|+|||||++.+|...|...++. .++..++... ......|.||+||+++++
T Consensus 6 ~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~ 85 (355)
T 3lre_A 6 EDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETST 85 (355)
T ss_dssp ------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCC
T ss_pred hhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCC
Confidence 445789999999999999998777654433 3333322211 123457999999999999
Q ss_pred chhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcCC-CceEEEEEeeeeeecc
Q 001118 132 TRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETP-GREFLLRVSYLEIYNE 210 (1150)
Q Consensus 132 QeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~~-~~~f~V~VSylEIYNE 210 (1150)
|++||+.+++|+|+++|+|||+||||||||||||||||+|++.++|||||++++||..++... ...|.|.|||+|||||
T Consensus 86 Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE 165 (355)
T 3lre_A 86 QSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNE 165 (355)
T ss_dssp HHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998654 5689999999999999
Q ss_pred hhhccCCCCCCceEEEeCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCC
Q 001118 211 VINDLLDPTGQNLRIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGEN 289 (1150)
Q Consensus 211 ~V~DLL~p~~~~L~IrEd~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~ 289 (1150)
+|+|||++. .++.|++|+ .|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+......
T Consensus 166 ~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 244 (355)
T 3lre_A 166 QIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS 244 (355)
T ss_dssp EEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSC
T ss_pred EEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCC
Confidence 999999875 479999998 579999999999999999999999999999999999999999999999999998654322
Q ss_pred CCCcceEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCC--CCcccCCCchhhhhhcccCCCC
Q 001118 290 QGEEDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEK--ATHIPYRDSKLTRLLQSSLSGH 366 (1150)
Q Consensus 290 ~~~~~v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k--~~hIPYRDSKLTrLLqDSLGGN 366 (1150)
....+..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+||||
T Consensus 245 -~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGn 323 (355)
T 3lre_A 245 -INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGN 323 (355)
T ss_dssp -TTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTT
T ss_pred -CCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCC
Confidence 23456789999999999999 5689999999999999999999999999999754 3699999999999999999999
Q ss_pred ccceeEEeeCCCCCCHHHHHHHHHHHhHcccc
Q 001118 367 GRISLICTVTPASSNSEETHNTLKFAHRSKHV 398 (1150)
Q Consensus 367 skT~mIatISPs~~~~eETLsTLrFA~RAK~I 398 (1150)
|+|+|||||||+..+++||++||+||+|||+|
T Consensus 324 skt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 324 CQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred ceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999986
No 13
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=9.7e-86 Score=747.76 Aligned_cols=332 Identities=40% Similarity=0.646 Sum_probs=277.1
Q ss_pred CCCCCeeeeeecCCCCcccccCCCe-EEEeeCCCeEEecC---CCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcC
Q 001118 75 KSKENVMVTVRFRPLSPREVNKGDE-IAWYADGDYTVRNE---YNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQG 150 (1150)
Q Consensus 75 ~~~~~VrV~VRVRPl~~~E~~~g~~-v~~~~d~~~~v~~~---~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~G 150 (1150)
...++|+|+|||||++..|...+.. ++...++..++... ....+.|.||+||+++++|++||+.+++|+|+++|+|
T Consensus 20 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G 99 (373)
T 2wbe_C 20 KSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNG 99 (373)
T ss_dssp CCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCC
Confidence 4578999999999999998654433 33333444443322 2345789999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCceeecCCCC-----------CCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCC
Q 001118 151 INGTVFAYGVTSSGKTHTMHGEQK-----------SPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPT 219 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~G~~~-----------~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~ 219 (1150)
||+||||||||||||||||+|++. ++|||||++++||..+... +..|.|+|||+|||||+|+|||++.
T Consensus 100 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~v~vS~~EIYnE~i~DLL~~~ 178 (373)
T 2wbe_C 100 YNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYTMRISYLELYNEELCDLLSTD 178 (373)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEETTEEEESSCTT
T ss_pred ceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEEEEEEEEEEeCCeEEECCCCC
Confidence 999999999999999999999754 6799999999999999753 5689999999999999999999876
Q ss_pred C-CceEEEeCC---CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcce
Q 001118 220 G-QNLRIREDA---QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDV 295 (1150)
Q Consensus 220 ~-~~L~IrEd~---~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v 295 (1150)
. ..+.+++++ .+++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.....+. .+....
T Consensus 179 ~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~ 257 (373)
T 2wbe_C 179 DTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGI-EGEDML 257 (373)
T ss_dssp SCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCT-TTCCEE
T ss_pred CCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCC-CCCcce
Confidence 4 568888885 35899999999999999999999999999999999999999999999999998764332 223456
Q ss_pred EEEEEEEeecCCCCC-Cccccc-chhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEE
Q 001118 296 TLSQLNLIDLAGSES-SKTETT-GLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLIC 373 (1150)
Q Consensus 296 ~~SkL~LVDLAGSEr-~kt~a~-G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIa 373 (1150)
..|+|+||||||||| .++++. |.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++|+|||
T Consensus 258 ~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mIa 336 (373)
T 2wbe_C 258 KIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDR-APHVPYRESKLTRLLQESLGGRTKTSIIA 336 (373)
T ss_dssp EEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHC-SSCCCGGGCHHHHHTHHHHHSSSEEEEEE
T ss_pred eEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcC-CCcCccccchHHHHHHHHhCCCceEEEEE
Confidence 789999999999999 467776 999999999999999999999999985 47999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHhHccccccccccccccC
Q 001118 374 TVTPASSNSEETHNTLKFAHRSKHVEIKASQNKIMD 409 (1150)
Q Consensus 374 tISPs~~~~eETLsTLrFA~RAK~Iknk~~vN~i~d 409 (1150)
||||+..+++||++||+||+|||+|+|+|.+|+...
T Consensus 337 ~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 337 TISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred EeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 999999999999999999999999999999998653
No 14
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=4.1e-85 Score=738.30 Aligned_cols=320 Identities=40% Similarity=0.641 Sum_probs=265.0
Q ss_pred CeeeeeecCCCCcccccCCCeEEEeeCCCeEEecCC----------CCceeEeeeeee--------CCCCcchhHHHHHH
Q 001118 79 NVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEY----------NPSIAYGFDKVF--------GPATTTRHVYDVAA 140 (1150)
Q Consensus 79 ~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~~~~----------~~s~~F~FD~VF--------~~~atQeeVYe~vv 140 (1150)
+|+|+|||||++.+|...+..+++..++..++.... ...+.|.||+|| ++.++|++||+.++
T Consensus 2 ~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~ 81 (354)
T 3gbj_A 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLG 81 (354)
T ss_dssp CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHH
T ss_pred CcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhh
Confidence 799999999999999877776666666665554321 235689999999 45689999999999
Q ss_pred HHHHHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhc--CCCceEEEEEeeeeeecchhhccCCC
Q 001118 141 QHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQE--TPGREFLLRVSYLEIYNEVINDLLDP 218 (1150)
Q Consensus 141 ~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~--~~~~~f~V~VSylEIYNE~V~DLL~p 218 (1150)
.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||..++. ..+..|.|+|||+|||||+|+|||+|
T Consensus 82 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 161 (354)
T 3gbj_A 82 ENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDP 161 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC-
T ss_pred HHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccCC
Confidence 9999999999999999999999999999999999999999999999999864 45678999999999999999999998
Q ss_pred CC--CceEEEeCCC-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcce
Q 001118 219 TG--QNLRIREDAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDV 295 (1150)
Q Consensus 219 ~~--~~L~IrEd~~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v 295 (1150)
.+ ..+.|++++. |++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.......+....
T Consensus 162 ~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~ 241 (354)
T 3gbj_A 162 KGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGE 241 (354)
T ss_dssp -----CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEEE
T ss_pred CCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCe
Confidence 63 5799999985 89999999999999999999999999999999999999999999999999987654444444556
Q ss_pred EEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccC-----CCCcccCCCchhhhhhcccCCCCccc
Q 001118 296 TLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDE-----KATHIPYRDSKLTRLLQSSLSGHGRI 369 (1150)
Q Consensus 296 ~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~-----k~~hIPYRDSKLTrLLqDSLGGNskT 369 (1150)
..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++. +..|||||||||||||||+||||++|
T Consensus 242 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt 321 (354)
T 3gbj_A 242 KVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKT 321 (354)
T ss_dssp EEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEE
T ss_pred eEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeE
Confidence 789999999999999 568999999999999999999999999999862 45799999999999999999999999
Q ss_pred eeEEeeCCCCCCHHHHHHHHHHHhHcccc
Q 001118 370 SLICTVTPASSNSEETHNTLKFAHRSKHV 398 (1150)
Q Consensus 370 ~mIatISPs~~~~eETLsTLrFA~RAK~I 398 (1150)
+|||||||+..+++||++||+||.||+.-
T Consensus 322 ~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 322 AMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred EEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999863
No 15
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.2e-84 Score=732.32 Aligned_cols=319 Identities=40% Similarity=0.625 Sum_probs=263.7
Q ss_pred CCCCeeeeeecCCCCcccccCCCeEEE-eeCCCeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeE
Q 001118 76 SKENVMVTVRFRPLSPREVNKGDEIAW-YADGDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGT 154 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~~v~~-~~d~~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~t 154 (1150)
..++|+|+|||||+++.|...+...++ ..++...+.. ...+.|.||+||+++++|++||+.+++|+|+++|+|||+|
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~--~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~t 86 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL--GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNAT 86 (344)
T ss_dssp CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE--TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEE
T ss_pred cccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe--cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCee
Confidence 467999999999999999876654433 2333223322 2457899999999999999999999999999999999999
Q ss_pred EEEeccCCCCCceeecCC------CCCCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCC--CCceEEE
Q 001118 155 VFAYGVTSSGKTHTMHGE------QKSPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPT--GQNLRIR 226 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~G~------~~~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~--~~~L~Ir 226 (1150)
|||||||||||||||+|. ++++|||||++++||..++......|.|+|||+|||||+|+|||++. ...+.|+
T Consensus 87 ifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ 166 (344)
T 4a14_A 87 VFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLR 166 (344)
T ss_dssp EEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGGGCEEE
T ss_pred EEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhccccccceee
Confidence 999999999999999997 46799999999999999998888999999999999999999999864 4579999
Q ss_pred eCCC-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCC----CCCcceEEEEEE
Q 001118 227 EDAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGEN----QGEEDVTLSQLN 301 (1150)
Q Consensus 227 Ed~~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~----~~~~~v~~SkL~ 301 (1150)
+|+. |++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++...... ........|+|+
T Consensus 167 e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl~ 246 (344)
T 4a14_A 167 EDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFH 246 (344)
T ss_dssp ECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEEEEEEE
T ss_pred eccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeeeeee
Confidence 9985 68999999999999999999999999999999999999999999999999997643211 123456789999
Q ss_pred EeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccC--CCCcccCCCchhhhhhcccCCCCccceeEEeeCCC
Q 001118 302 LIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDE--KATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPA 378 (1150)
Q Consensus 302 LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~--k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs 378 (1150)
||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+||||++|+|||||||+
T Consensus 247 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP~ 326 (344)
T 4a14_A 247 FVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPS 326 (344)
T ss_dssp EEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECCB
T ss_pred EEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCCC
Confidence 999999999 569999999999999999999999999999874 34799999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhHcc
Q 001118 379 SSNSEETHNTLKFAHRSK 396 (1150)
Q Consensus 379 ~~~~eETLsTLrFA~RAK 396 (1150)
..+++||++||+||+|||
T Consensus 327 ~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 327 SSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp GGGHHHHHHHHHHHHHTC
T ss_pred ccchhHHhhhhhhhhhcC
Confidence 999999999999999997
No 16
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.9e-85 Score=736.10 Aligned_cols=318 Identities=37% Similarity=0.562 Sum_probs=259.9
Q ss_pred CCCCCeeeeeecCCCCcccccCCCeEEEeeCCCeEEe-----------cCCCCceeEeeeeeeCCCCcchhHHHHHHHHH
Q 001118 75 KSKENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVR-----------NEYNPSIAYGFDKVFGPATTTRHVYDVAAQHV 143 (1150)
Q Consensus 75 ~~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~-----------~~~~~s~~F~FD~VF~~~atQeeVYe~vv~pl 143 (1150)
..+++|+|+|||||++..|.. .+.+..++..+.. ......+.|.||+||+ +++|++||+.+++|+
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~pl 96 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE---MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV 96 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT---TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred CCCCCEEEEEEcCCCCccccc---ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHH
Confidence 347899999999999876632 1122222222211 2223456799999997 589999999999999
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeecCCCC---CCCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCC-
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMHGEQK---SPGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPT- 219 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~---~~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~- 219 (1150)
|+++|+|||+||||||||||||||||+|+.. ++|||||++++||..+...++..|.|+|||+|||||+|+|||++.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 176 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLP 176 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSST
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccccc
Confidence 9999999999999999999999999999754 489999999999999998889999999999999999999999853
Q ss_pred -----CCceEEEeCCCCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcc
Q 001118 220 -----GQNLRIREDAQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEED 294 (1150)
Q Consensus 220 -----~~~L~IrEd~~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~ 294 (1150)
...+.+++++.|++|.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|.+.... .....
T Consensus 177 ~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~--~~~~~ 254 (359)
T 3nwn_A 177 YVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT--LSEEK 254 (359)
T ss_dssp TSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---------C
T ss_pred ccccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccc--ccCcc
Confidence 34688999999999999999999999999999999999999999999999999999999999875432 22345
Q ss_pred eEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEE
Q 001118 295 VTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLIC 373 (1150)
Q Consensus 295 v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIa 373 (1150)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||
T Consensus 255 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~ 334 (359)
T 3nwn_A 255 YITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVT 334 (359)
T ss_dssp CEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEE
T ss_pred cccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEE
Confidence 6789999999999999 568999999999999999999999999999988778999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHhHcccc
Q 001118 374 TVTPASSNSEETHNTLKFAHRSKHV 398 (1150)
Q Consensus 374 tISPs~~~~eETLsTLrFA~RAK~I 398 (1150)
||||+..+++||++||+||+|||+|
T Consensus 335 ~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 335 NIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EeCCchhhHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987
No 17
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.7e-84 Score=723.04 Aligned_cols=319 Identities=38% Similarity=0.562 Sum_probs=271.2
Q ss_pred CCCCeeeeeecCCCCcccccCCC---eEEEeeCCC-eEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCC
Q 001118 76 SKENVMVTVRFRPLSPREVNKGD---EIAWYADGD-YTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGI 151 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~---~v~~~~d~~-~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL~Gy 151 (1150)
.+++|+|+|||||+++.|...+. .+.+..++. .+..........|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~ 80 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGF 80 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHHTTC
T ss_pred CCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHhCCC
Confidence 46899999999999999864322 233333333 23333334457899999999999999999985 89999999999
Q ss_pred CeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcC-CCceEEEEEeeeeeecchhhccCCCCC-CceEEE--e
Q 001118 152 NGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQET-PGREFLLRVSYLEIYNEVINDLLDPTG-QNLRIR--E 227 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~-~~~~f~V~VSylEIYNE~V~DLL~p~~-~~L~Ir--E 227 (1150)
|+||||||||||||||||+|++.++|||||++++||..++.. .+..|.|+|||+|||||+|+|||++.. ..+.|+ +
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~ 160 (330)
T 2h58_A 81 NVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCP 160 (330)
T ss_dssp CEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECT
T ss_pred EEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceEEEee
Confidence 999999999999999999999999999999999999999754 457899999999999999999998754 334444 5
Q ss_pred CC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecC
Q 001118 228 DA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLA 306 (1150)
Q Consensus 228 d~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLA 306 (1150)
++ .|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... ......|+|+|||||
T Consensus 161 ~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~skL~lVDLA 236 (330)
T 2h58_A 161 DGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS----TGLRTTGKLNLVDLA 236 (330)
T ss_dssp TSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT----TTEEEEEEEEEEECC
T ss_pred cCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC----CCcEEEEEEEEEeCC
Confidence 65 4689999999999999999999999999999999999999999999999999876432 345678999999999
Q ss_pred CCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHH
Q 001118 307 GSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEET 385 (1150)
Q Consensus 307 GSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eET 385 (1150)
|||| .++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++|+|||||||+..+++||
T Consensus 237 GSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ET 315 (330)
T 2h58_A 237 GSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSR-QGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSET 315 (330)
T ss_dssp CCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHH
T ss_pred CCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcC-CCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHH
Confidence 9999 568999999999999999999999999999875 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHcccccc
Q 001118 386 HNTLKFAHRSKHVEI 400 (1150)
Q Consensus 386 LsTLrFA~RAK~Ikn 400 (1150)
++||+||+|||+|+.
T Consensus 316 l~TL~fA~rak~i~~ 330 (330)
T 2h58_A 316 LYSLKFAERVRSVEL 330 (330)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHhhCcC
Confidence 999999999999863
No 18
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=8.6e-84 Score=728.23 Aligned_cols=318 Identities=37% Similarity=0.561 Sum_probs=261.1
Q ss_pred CCCCCeeeeeecCCCCcccccCCCeEEEeeCCCeEEec-----------CCCCceeEeeeeeeCCCCcchhHHHHHHHHH
Q 001118 75 KSKENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRN-----------EYNPSIAYGFDKVFGPATTTRHVYDVAAQHV 143 (1150)
Q Consensus 75 ~~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~~-----------~~~~s~~F~FD~VF~~~atQeeVYe~vv~pl 143 (1150)
+.+|+|+|+|||||+...+. ..+.+..++..+... .....+.|.||+||+ +++|++||+.+++|+
T Consensus 20 ~~~g~IrV~vRvRP~~~~~~---~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~l 95 (358)
T 2nr8_A 20 GTRKKVHAFVRVKPTDDFAH---EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV 95 (358)
T ss_dssp ---CCEEEEEEECCCSSCCT---TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred CCCCCeEEEEEcCCCCCCcc---ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHHHH
Confidence 45899999999999875432 123333333333211 122346799999995 889999999999999
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeecCCCCC---CCchhhHHHHHHHhhhcCCCceEEEEEeeeeeecchhhccCCCC-
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMHGEQKS---PGIIPLAVKDVFGIIQETPGREFLLRVSYLEIYNEVINDLLDPT- 219 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~---~GIIPRal~dLF~~I~~~~~~~f~V~VSylEIYNE~V~DLL~p~- 219 (1150)
|+++|+|||+||||||||||||||||+|++.+ +|||||++++||..++..++..|.|+|||+|||||+|+|||++.
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 175 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLP 175 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSST
T ss_pred HHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcCCcc
Confidence 99999999999999999999999999998764 89999999999999998888899999999999999999999863
Q ss_pred -----CCceEEEeCCCCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcc
Q 001118 220 -----GQNLRIREDAQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEED 294 (1150)
Q Consensus 220 -----~~~L~IrEd~~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~ 294 (1150)
..++.|++++.|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++..... ....
T Consensus 176 ~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~--~~~~ 253 (358)
T 2nr8_A 176 YVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL--SEEK 253 (358)
T ss_dssp TSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---------C
T ss_pred ccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccC--CCCC
Confidence 357999999999999999999999999999999999999999999999999999999999998754322 2344
Q ss_pred eEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEE
Q 001118 295 VTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLIC 373 (1150)
Q Consensus 295 v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIa 373 (1150)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||
T Consensus 254 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mIa 333 (358)
T 2nr8_A 254 YITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVT 333 (358)
T ss_dssp CEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEE
T ss_pred EEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEEE
Confidence 6789999999999999 568999999999999999999999999999987778999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHhHcccc
Q 001118 374 TVTPASSNSEETHNTLKFAHRSKHV 398 (1150)
Q Consensus 374 tISPs~~~~eETLsTLrFA~RAK~I 398 (1150)
||||+..+++||++||+||+|||.|
T Consensus 334 ~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 334 NIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999986
No 19
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=2e-83 Score=723.43 Aligned_cols=320 Identities=33% Similarity=0.511 Sum_probs=259.4
Q ss_pred CCCCeeeeeecCCCCcccccCCCeEEEee----CCCeEEe--cC--CCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHh
Q 001118 76 SKENVMVTVRFRPLSPREVNKGDEIAWYA----DGDYTVR--NE--YNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGA 147 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~~v~~~~----d~~~~v~--~~--~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~v 147 (1150)
.+|||+|+|||||+++.|...+..+.+.. .+...+. .. ......|.||+||+++++|++||+.+ .|+|+++
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~ 81 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSS 81 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHH-HHHHHGG
T ss_pred CCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHH-HHHHHHH
Confidence 36899999999999999987766655432 1222221 11 12246899999999999999999985 6999999
Q ss_pred hcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcC--CCceEEEEEeeeeeecchhhccCCCCC-----
Q 001118 148 MQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQET--PGREFLLRVSYLEIYNEVINDLLDPTG----- 220 (1150)
Q Consensus 148 L~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~--~~~~f~V~VSylEIYNE~V~DLL~p~~----- 220 (1150)
|+|||+||||||||||||||||+|++ +|||||++++||..+... .+..|.|+|||+|||||+|+|||++..
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm~g~~--~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 159 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTMLNAG--DGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNI 159 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHHHSTT--TSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC--------
T ss_pred HCCcceeEEEeCCCCCCCceEeCCCC--CchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccc
Confidence 99999999999999999999999974 599999999999998753 356899999999999999999998643
Q ss_pred ------CceEEEeCC--CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCC
Q 001118 221 ------QNLRIREDA--QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGE 292 (1150)
Q Consensus 221 ------~~L~IrEd~--~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~ 292 (1150)
..+.|++++ .|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... .
T Consensus 160 ~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~ 235 (349)
T 3t0q_A 160 DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLH----T 235 (349)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETT----T
T ss_pred ccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecC----C
Confidence 457787765 4799999999999999999999999999999999999999999999999999876432 2
Q ss_pred cceEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCC--CcccCCCchhhhhhcccCCCCccc
Q 001118 293 EDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKA--THIPYRDSKLTRLLQSSLSGHGRI 369 (1150)
Q Consensus 293 ~~v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~--~hIPYRDSKLTrLLqDSLGGNskT 369 (1150)
.....|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++. .|||||||||||||||+||||++|
T Consensus 236 ~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt 315 (349)
T 3t0q_A 236 GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKT 315 (349)
T ss_dssp CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEE
T ss_pred CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceE
Confidence 346789999999999999 56899999999999999999999999999987543 599999999999999999999999
Q ss_pred eeEEeeCCCCCCHHHHHHHHHHHhHcccccccc
Q 001118 370 SLICTVTPASSNSEETHNTLKFAHRSKHVEIKA 402 (1150)
Q Consensus 370 ~mIatISPs~~~~eETLsTLrFA~RAK~Iknk~ 402 (1150)
+|||||||+..+++||++||+||+|+++|+..+
T Consensus 316 ~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 316 LMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999998754
No 20
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=4e-83 Score=720.41 Aligned_cols=320 Identities=33% Similarity=0.493 Sum_probs=262.9
Q ss_pred CCCeeeeeecCCCCc-ccccCCCeEEEee-C---CCeEE--ec--CCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHh
Q 001118 77 KENVMVTVRFRPLSP-REVNKGDEIAWYA-D---GDYTV--RN--EYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGA 147 (1150)
Q Consensus 77 ~~~VrV~VRVRPl~~-~E~~~g~~v~~~~-d---~~~~v--~~--~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~v 147 (1150)
+++|+|+|||||+++ .|......+.+.. + +...+ .. .....+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 2 k~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 80 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS 80 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred CCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHHHh
Confidence 689999999999987 4533332232221 1 22222 11 223457899999999999999999985 5999999
Q ss_pred hcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcC--CCceEEEEEeeeeeecchhhccCCCCCC----
Q 001118 148 MQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQET--PGREFLLRVSYLEIYNEVINDLLDPTGQ---- 221 (1150)
Q Consensus 148 L~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~--~~~~f~V~VSylEIYNE~V~DLL~p~~~---- 221 (1150)
|+|||+||||||||||||||||+|+ ++|||||++++||..|... .+..|.|+|||+|||||+|+|||++...
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 158 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED 158 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------
T ss_pred cCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccc
Confidence 9999999999999999999999996 4699999999999999753 4568999999999999999999987643
Q ss_pred -----ceEEEeCC--CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcc
Q 001118 222 -----NLRIREDA--QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEED 294 (1150)
Q Consensus 222 -----~L~IrEd~--~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~ 294 (1150)
.+.|++++ .|++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+.... ...
T Consensus 159 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~ 234 (347)
T 1f9v_A 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK----TGA 234 (347)
T ss_dssp -----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC------CC
T ss_pred cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCC----CCc
Confidence 46788765 4799999999999999999999999999999999999999999999999999876432 234
Q ss_pred eEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCC--CCcccCCCchhhhhhcccCCCCcccee
Q 001118 295 VTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEK--ATHIPYRDSKLTRLLQSSLSGHGRISL 371 (1150)
Q Consensus 295 v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k--~~hIPYRDSKLTrLLqDSLGGNskT~m 371 (1150)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+||||++|+|
T Consensus 235 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~m 314 (347)
T 1f9v_A 235 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLM 314 (347)
T ss_dssp EEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEE
T ss_pred eeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEE
Confidence 6789999999999999 5689999999999999999999999999998865 479999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhHccccccccc
Q 001118 372 ICTVTPASSNSEETHNTLKFAHRSKHVEIKAS 403 (1150)
Q Consensus 372 IatISPs~~~~eETLsTLrFA~RAK~Iknk~~ 403 (1150)
||||||+..+++||++||+||+|+++|++.++
T Consensus 315 I~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 315 FVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999999999999999988764
No 21
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.8e-83 Score=725.29 Aligned_cols=319 Identities=34% Similarity=0.504 Sum_probs=248.8
Q ss_pred CCCCCCeeeeeecCCCCcccccCCCe-EEEe-------eCCCeEEecC-------------CCCceeEeeeeeeCCCCcc
Q 001118 74 SKSKENVMVTVRFRPLSPREVNKGDE-IAWY-------ADGDYTVRNE-------------YNPSIAYGFDKVFGPATTT 132 (1150)
Q Consensus 74 ~~~~~~VrV~VRVRPl~~~E~~~g~~-v~~~-------~d~~~~v~~~-------------~~~s~~F~FD~VF~~~atQ 132 (1150)
...+++|+|+|||||+++.|...+.. +.+. .++..+.... ......|.||+||+++++|
T Consensus 18 ~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q 97 (376)
T 2rep_A 18 GSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQ 97 (376)
T ss_dssp -----CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCH
T ss_pred hccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccc
Confidence 34579999999999999999765432 1111 1122222111 1124579999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeecCCCC----CCCchhhHHHHHHHhhhcC--CCceEEEEEeeee
Q 001118 133 RHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQK----SPGIIPLAVKDVFGIIQET--PGREFLLRVSYLE 206 (1150)
Q Consensus 133 eeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~----~~GIIPRal~dLF~~I~~~--~~~~f~V~VSylE 206 (1150)
++||+.+ .|+|+++|+|||+||||||||||||||||+|++. .+|||||++++||..++.. .+..|.|+|||+|
T Consensus 98 ~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~E 176 (376)
T 2rep_A 98 DEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVE 176 (376)
T ss_dssp HHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEE
T ss_pred hhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEE
Confidence 9999986 4899999999999999999999999999999754 6899999999999999753 4578999999999
Q ss_pred eecchhhccCCCC-----CCceEEEeCC---CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEE
Q 001118 207 IYNEVINDLLDPT-----GQNLRIREDA---QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFT 278 (1150)
Q Consensus 207 IYNE~V~DLL~p~-----~~~L~IrEd~---~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFt 278 (1150)
||||+|+|||++. ...+.|+++. .|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+
T Consensus 177 IYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ift 256 (376)
T 2rep_A 177 IYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQ 256 (376)
T ss_dssp EETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEE
T ss_pred EECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEE
Confidence 9999999999875 2468899883 5799999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCcceEEEEEEEeecCCCCC-Ccccccc----hhcccccccchhHHHHHHHHHHhccCCCCcccCCCc
Q 001118 279 LTIESSPTGENQGEEDVTLSQLNLIDLAGSES-SKTETTG----LRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDS 353 (1150)
Q Consensus 279 I~V~~~~~~~~~~~~~v~~SkL~LVDLAGSEr-~kt~a~G----~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDS 353 (1150)
|+|.+.... ......|+|+||||||||| .++++.| .|++|+.+||+||++||+||.+|+++ ..|||||||
T Consensus 257 i~v~~~~~~----~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~-~~hVPYRdS 331 (376)
T 2rep_A 257 LQISGEHSS----RGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNK-ESHVPYRNS 331 (376)
T ss_dssp EEEEEEESS----SCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTT-CSCCCGGGS
T ss_pred EEEEEEecC----CCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcC-CCccCCcCC
Confidence 999876432 2346789999999999999 4688888 99999999999999999999999975 479999999
Q ss_pred hhhhhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHhHcccc
Q 001118 354 KLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHV 398 (1150)
Q Consensus 354 KLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLrFA~RAK~I 398 (1150)
||||||||+||||++|+|||||||+..+++||++||+||+|++++
T Consensus 332 kLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 332 KLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999864
No 22
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=8.9e-83 Score=725.20 Aligned_cols=315 Identities=34% Similarity=0.510 Sum_probs=255.1
Q ss_pred CCCCeeeeeecCCCCcccccCCCeEEEe-eCCCeEEecCC----C-----CceeEeeeeeeCCCCcchhHHHHHHHHHHH
Q 001118 76 SKENVMVTVRFRPLSPREVNKGDEIAWY-ADGDYTVRNEY----N-----PSIAYGFDKVFGPATTTRHVYDVAAQHVVN 145 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~~v~~~-~d~~~~v~~~~----~-----~s~~F~FD~VF~~~atQeeVYe~vv~plV~ 145 (1150)
..++|+|+|||||+++.|...+...++. .+...++.... . ....|.||+||+++++|++||+.+++|+|+
T Consensus 49 ~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~ 128 (387)
T 2heh_A 49 EEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 128 (387)
T ss_dssp CCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHH
Confidence 3789999999999999998776543333 33333332211 0 235799999999999999999999999999
Q ss_pred HhhcCCCeEEEEeccCCCCCceeecCC------CCCCCchhhHHHHHHHhhhcC--CCceEEEEEeeeeeecchhhccCC
Q 001118 146 GAMQGINGTVFAYGVTSSGKTHTMHGE------QKSPGIIPLAVKDVFGIIQET--PGREFLLRVSYLEIYNEVINDLLD 217 (1150)
Q Consensus 146 ~vL~GyN~tIfAYGQTGSGKTyTM~G~------~~~~GIIPRal~dLF~~I~~~--~~~~f~V~VSylEIYNE~V~DLL~ 217 (1150)
++|+|||+||||||||||||||||+|+ ...+|||||++++||..+... .+..|.|+|||+|||||+|+|||+
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~ 208 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN 208 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTT
T ss_pred HHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCC
Confidence 999999999999999999999999996 346899999999999998743 356799999999999999999998
Q ss_pred CCCCceEEEeCCC-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceE
Q 001118 218 PTGQNLRIREDAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVT 296 (1150)
Q Consensus 218 p~~~~L~IrEd~~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~ 296 (1150)
+. ..+.|++|+. |++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+. ...
T Consensus 209 ~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~---------~~~ 278 (387)
T 2heh_A 209 KK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK---------GRM 278 (387)
T ss_dssp TT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS---------SSE
T ss_pred CC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC---------Cee
Confidence 75 4699999985 799999999999999999999999999999999999999999999999999753 246
Q ss_pred EEEEEEeecCCCCCC-ccc-ccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhccc-CCCCccceeEE
Q 001118 297 LSQLNLIDLAGSESS-KTE-TTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSS-LSGHGRISLIC 373 (1150)
Q Consensus 297 ~SkL~LVDLAGSEr~-kt~-a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDS-LGGNskT~mIa 373 (1150)
.|+|+|||||||||. +++ +.|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+ ||||++|+|||
T Consensus 279 ~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPYRdSKLTrlLqdsllGgnskT~mIa 357 (387)
T 2heh_A 279 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCMIA 357 (387)
T ss_dssp EEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGGSSTTEEEEEEE
T ss_pred eeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC-CCCCCccccHHHHHHhhhccCCCCeEEEEE
Confidence 799999999999994 454 56788899999999999999999999975 489999999999999999 69999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHhHccccccc
Q 001118 374 TVTPASSNSEETHNTLKFAHRSKHVEIK 401 (1150)
Q Consensus 374 tISPs~~~~eETLsTLrFA~RAK~Iknk 401 (1150)
||||+..+++||++||+||+|||+|++.
T Consensus 358 ~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 358 TISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred EeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 9999999999999999999999999764
No 23
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=7.6e-83 Score=720.99 Aligned_cols=320 Identities=31% Similarity=0.429 Sum_probs=267.7
Q ss_pred CeeeeeecCCCCcccccCCCeE-EEeeCCCeEEecCC---------CCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhh
Q 001118 79 NVMVTVRFRPLSPREVNKGDEI-AWYADGDYTVRNEY---------NPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAM 148 (1150)
Q Consensus 79 ~VrV~VRVRPl~~~E~~~g~~v-~~~~d~~~~v~~~~---------~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL 148 (1150)
+|+|+|||||+++.|...+... +...++..++.... .....|.||+||+++++|++||+.+++|+|++++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 6999999999999998766543 33334443332211 1235799999999999999999999999999999
Q ss_pred c-CCCeEEEEeccCCCCCceeecCCC-----CCCCchhhHHHHHHHhhhcC-CCceEEEEEeeeeeecchhhccCCCCCC
Q 001118 149 Q-GINGTVFAYGVTSSGKTHTMHGEQ-----KSPGIIPLAVKDVFGIIQET-PGREFLLRVSYLEIYNEVINDLLDPTGQ 221 (1150)
Q Consensus 149 ~-GyN~tIfAYGQTGSGKTyTM~G~~-----~~~GIIPRal~dLF~~I~~~-~~~~f~V~VSylEIYNE~V~DLL~p~~~ 221 (1150)
+ ||||||||||||||||||||+|++ ..+|||||++++||..++.. .+..|.|+|||+|||||+|+|||++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 5 999999999999999999999974 67899999999999999753 456899999999999999999998764
Q ss_pred ceEEEeCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEE
Q 001118 222 NLRIREDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQL 300 (1150)
Q Consensus 222 ~L~IrEd~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL 300 (1150)
.+.+++++ .|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+.. .....|+|
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~-------~~~~~skL 232 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN-------KNTSLGKI 232 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT-------TTEEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc-------CCcceeEE
Confidence 56778877 57999999999999999999999999999999999999999999999999998642 23678999
Q ss_pred EEeecCCCCC-Ccccccc-hhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCC
Q 001118 301 NLIDLAGSES-SKTETTG-LRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPA 378 (1150)
Q Consensus 301 ~LVDLAGSEr-~kt~a~G-~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs 378 (1150)
+||||||||| .++++.| .+++|+.+||+||++||+||.+|+.+ ..|||||||||||||||+||||++|+|||||||+
T Consensus 233 ~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~ 311 (360)
T 1ry6_A 233 AFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD-KNHIPFRDSELTKVLRDIFVGKSKSIMIANISPT 311 (360)
T ss_dssp EEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCB
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcC-CCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCC
Confidence 9999999999 4577665 56899999999999999999999875 4799999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhHccccccccccccc
Q 001118 379 SSNSEETHNTLKFAHRSKHVEIKASQNKI 407 (1150)
Q Consensus 379 ~~~~eETLsTLrFA~RAK~Iknk~~vN~i 407 (1150)
..+++||++||+||+|||+|+|.|..|..
T Consensus 312 ~~~~~ETlsTLrfA~rak~i~n~~~~~~~ 340 (360)
T 1ry6_A 312 ISCCEQTLNTLRYSSRVKNKGNSKLEGKP 340 (360)
T ss_dssp GGGHHHHHHHHHHHHHHCC----------
T ss_pred cccHHHHHHHHHHHHHHhhcccCcccCCC
Confidence 99999999999999999999997666654
No 24
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1.4e-82 Score=727.78 Aligned_cols=317 Identities=33% Similarity=0.502 Sum_probs=258.6
Q ss_pred CCCeeeeeecCCCCcccccCCCeEEEe-eCCCeEEecCC----C-----CceeEeeeeeeCCCCcchhHHHHHHHHHHHH
Q 001118 77 KENVMVTVRFRPLSPREVNKGDEIAWY-ADGDYTVRNEY----N-----PSIAYGFDKVFGPATTTRHVYDVAAQHVVNG 146 (1150)
Q Consensus 77 ~~~VrV~VRVRPl~~~E~~~g~~v~~~-~d~~~~v~~~~----~-----~s~~F~FD~VF~~~atQeeVYe~vv~plV~~ 146 (1150)
.++|+|+|||||++..|...+...++. .+...++.... . ....|.||+||+++++|++||+.+++|+|++
T Consensus 70 ~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~ 149 (410)
T 1v8k_A 70 EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 149 (410)
T ss_dssp CCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHHH
Confidence 689999999999999998776554333 33333332211 0 2357999999999999999999999999999
Q ss_pred hhcCCCeEEEEeccCCCCCceeecCCC------CCCCchhhHHHHHHHhhhcC--CCceEEEEEeeeeeecchhhccCCC
Q 001118 147 AMQGINGTVFAYGVTSSGKTHTMHGEQ------KSPGIIPLAVKDVFGIIQET--PGREFLLRVSYLEIYNEVINDLLDP 218 (1150)
Q Consensus 147 vL~GyN~tIfAYGQTGSGKTyTM~G~~------~~~GIIPRal~dLF~~I~~~--~~~~f~V~VSylEIYNE~V~DLL~p 218 (1150)
+|+|||+||||||||||||||||+|+. ..+|||||++++||..+... .+..|.|+|||+|||||+|+|||++
T Consensus 150 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~ 229 (410)
T 1v8k_A 150 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK 229 (410)
T ss_dssp HHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCC
Confidence 999999999999999999999999963 46899999999999998643 3568999999999999999999987
Q ss_pred CCCceEEEeCCC-CcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEE
Q 001118 219 TGQNLRIREDAQ-GTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTL 297 (1150)
Q Consensus 219 ~~~~L~IrEd~~-Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~ 297 (1150)
. ..+.|++|+. |++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+. ....
T Consensus 230 ~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~---------~~~~ 299 (410)
T 1v8k_A 230 K-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK---------GRLH 299 (410)
T ss_dssp T-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS---------SSEE
T ss_pred C-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC---------Ccce
Confidence 5 4699999984 799999999999999999999999999999999999999999999999999753 1467
Q ss_pred EEEEEeecCCCCCC-ccc-ccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhccc-CCCCccceeEEe
Q 001118 298 SQLNLIDLAGSESS-KTE-TTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSS-LSGHGRISLICT 374 (1150)
Q Consensus 298 SkL~LVDLAGSEr~-kt~-a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDS-LGGNskT~mIat 374 (1150)
|+|+|||||||||. +++ +.|.+++|+.+||+||++||+||.+|+.+ ..|||||||||||||||+ |||||+|+||||
T Consensus 300 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hIPYRdSKLTrLLqdsllGgnskT~mIa~ 378 (410)
T 1v8k_A 300 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCMIAM 378 (410)
T ss_dssp EEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEE
T ss_pred eEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcC-CCCCCcccchhHHHHhhcccCCCceEEEEEE
Confidence 99999999999994 454 56788999999999999999999999875 479999999999999999 599999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhHcccccccccc
Q 001118 375 VTPASSNSEETHNTLKFAHRSKHVEIKASQ 404 (1150)
Q Consensus 375 ISPs~~~~eETLsTLrFA~RAK~Iknk~~v 404 (1150)
|||+..+++||++||+||+|||.|..+|..
T Consensus 379 iSP~~~~~~ETlsTLrfA~rak~i~~~~~~ 408 (410)
T 1v8k_A 379 ISPGISSCEYTLNTLRYADRVKELSHHHHH 408 (410)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHHTTC-----
T ss_pred eCCccccHHHHHHHHHHHHHhccCCCCCCC
Confidence 999999999999999999999999887754
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=3e-82 Score=726.80 Aligned_cols=324 Identities=35% Similarity=0.540 Sum_probs=267.7
Q ss_pred CCCCeeeeeecCCCCcccccCCCeEEEeeCCCeEEecCCC-------CceeEeeeeeeCCCCcchhHHHHHHHHHHHHhh
Q 001118 76 SKENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYN-------PSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAM 148 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~~~~~-------~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL 148 (1150)
.+|+|+|+|||||+.+.|...+..++...++..+...... ....|.||+||+++++|++||+.+ .|+|+++|
T Consensus 57 l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~plv~~~l 135 (412)
T 3u06_A 57 LRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMV-SPLIQSAL 135 (412)
T ss_dssp HTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTTT-HHHHHHHH
T ss_pred hCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHHH-HHHHHHHH
Confidence 3689999999999999997665544444555443332211 235799999999999999999864 69999999
Q ss_pred cCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcC--CCceEEEEEeeeeeecchhhccCCCCCCceEEE
Q 001118 149 QGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQET--PGREFLLRVSYLEIYNEVINDLLDPTGQNLRIR 226 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~--~~~~f~V~VSylEIYNE~V~DLL~p~~~~L~Ir 226 (1150)
+|||+||||||||||||||||+|.++++|||||++++||..|... .+..|.|+|||+|||||.|+|||++....+.++
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~ 215 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIR 215 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEE
T ss_pred CCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceee
Confidence 999999999999999999999999999999999999999999753 467999999999999999999999877766666
Q ss_pred --eCC-CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEe
Q 001118 227 --EDA-QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLI 303 (1150)
Q Consensus 227 --Ed~-~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LV 303 (1150)
+++ .|++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|.+.... ......|+|+||
T Consensus 216 ~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~~~~~~kL~lV 291 (412)
T 3u06_A 216 MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE----KQEISVGSINLV 291 (412)
T ss_dssp ECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETT----TTEEEEEEEEEE
T ss_pred eeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCC----CCCEEEEEEEEE
Confidence 444 4799999999999999999999999999999999999999999999999999876432 345678999999
Q ss_pred ecCCCCCCcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHH
Q 001118 304 DLAGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSE 383 (1150)
Q Consensus 304 DLAGSEr~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~e 383 (1150)
||||||+.+ .|.|++|+.+||+||++||+||.+|+.+ ..|||||||||||||||+|||||+|+|||||||+..+++
T Consensus 292 DLAGSEr~~---~~~rl~E~~~INkSL~aLg~vI~aL~~~-~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ 367 (412)
T 3u06_A 292 DLAGSESPK---TSTRMTETKNINRSLSELTNVILALLQK-QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQ 367 (412)
T ss_dssp ECCCCCC-------------CTTTHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHH
T ss_pred ECCCCCcCC---ccchhHhHHHHhHHHHHHHHHHHHHhcc-CCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHH
Confidence 999999864 3689999999999999999999999975 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHccccccc-ccccccc
Q 001118 384 ETHNTLKFAHRSKHVEIK-ASQNKIM 408 (1150)
Q Consensus 384 ETLsTLrFA~RAK~Iknk-~~vN~i~ 408 (1150)
||++||+||+|++.|+.. ++.|.+.
T Consensus 368 ETl~TLrfA~rv~~i~~~~~~~n~~~ 393 (412)
T 3u06_A 368 ESVKSLRFAASVNSCKMTKAKRNRYL 393 (412)
T ss_dssp HHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHhhcccccccccccC
Confidence 999999999999999854 5555543
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-81 Score=720.65 Aligned_cols=321 Identities=33% Similarity=0.500 Sum_probs=267.8
Q ss_pred CCCCeeeeeecCCCCcc-cccCCCeEEEe-eCC---CeE--Ee--cCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHH
Q 001118 76 SKENVMVTVRFRPLSPR-EVNKGDEIAWY-ADG---DYT--VR--NEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNG 146 (1150)
Q Consensus 76 ~~~~VrV~VRVRPl~~~-E~~~g~~v~~~-~d~---~~~--v~--~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~ 146 (1150)
.+|+|+|+|||||+.+. |...+..+.+. .+. ... +. ......+.|.||+||+++++|++||+.++ |+|++
T Consensus 57 lkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~-~lv~~ 135 (403)
T 4etp_A 57 LRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQS 135 (403)
T ss_dssp HHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHHH-HHHHH
T ss_pred cCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHHH-HHHHH
Confidence 36899999999999877 43333333332 221 111 11 11223468999999999999999999854 89999
Q ss_pred hhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhc--CCCceEEEEEeeeeeecchhhccCCCCC----
Q 001118 147 AMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQE--TPGREFLLRVSYLEIYNEVINDLLDPTG---- 220 (1150)
Q Consensus 147 vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~--~~~~~f~V~VSylEIYNE~V~DLL~p~~---- 220 (1150)
+|+|||+||||||||||||||||+|+ ++|||||++++||..|+. ..+..|.|+|||+|||||.|+|||++..
T Consensus 136 ~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 213 (403)
T 4etp_A 136 SLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKE 213 (403)
T ss_dssp HHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC------
T ss_pred HhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccccc
Confidence 99999999999999999999999996 459999999999999975 4567999999999999999999998753
Q ss_pred -----CceEEEeCC--CCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCc
Q 001118 221 -----QNLRIREDA--QGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEE 293 (1150)
Q Consensus 221 -----~~L~IrEd~--~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~ 293 (1150)
..+.|++++ .|++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|.+.... ..
T Consensus 214 ~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----~~ 289 (403)
T 4etp_A 214 DTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK----TG 289 (403)
T ss_dssp --CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETT----TC
T ss_pred ccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecC----CC
Confidence 356777775 4689999999999999999999999999999999999999999999999999876432 23
Q ss_pred ceEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCC--CcccCCCchhhhhhcccCCCCccce
Q 001118 294 DVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKA--THIPYRDSKLTRLLQSSLSGHGRIS 370 (1150)
Q Consensus 294 ~v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~--~hIPYRDSKLTrLLqDSLGGNskT~ 370 (1150)
....|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++.. .|||||||||||||||+|||||+|+
T Consensus 290 ~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~ 369 (403)
T 4etp_A 290 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL 369 (403)
T ss_dssp CEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEE
T ss_pred CeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEE
Confidence 46789999999999999 56899999999999999999999999999987543 5999999999999999999999999
Q ss_pred eEEeeCCCCCCHHHHHHHHHHHhHccccccccc
Q 001118 371 LICTVTPASSNSEETHNTLKFAHRSKHVEIKAS 403 (1150)
Q Consensus 371 mIatISPs~~~~eETLsTLrFA~RAK~Iknk~~ 403 (1150)
|||||||+..+++||++||+||+|+++|+..+.
T Consensus 370 mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 370 MFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 999999999999999999999999999988764
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=7.7e-81 Score=700.91 Aligned_cols=312 Identities=28% Similarity=0.430 Sum_probs=244.3
Q ss_pred CCCCCCCCeeeeeecCCCCcccccCCCeEEEeeC---CCeEEecCCCCceeEeeeeeeCCCCcchhHHHHHHHHHHHHhh
Q 001118 72 ETSKSKENVMVTVRFRPLSPREVNKGDEIAWYAD---GDYTVRNEYNPSIAYGFDKVFGPATTTRHVYDVAAQHVVNGAM 148 (1150)
Q Consensus 72 ~~~~~~~~VrV~VRVRPl~~~E~~~g~~v~~~~d---~~~~v~~~~~~s~~F~FD~VF~~~atQeeVYe~vv~plV~~vL 148 (1150)
.+....++|+|+|||||+++.|......++...+ +..++. ....|.||+||+++++|++||+.++.|+|+.+|
T Consensus 16 m~~~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~----~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l 91 (344)
T 3dc4_A 16 MEGAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIV----DQNEFHFDHAFPATISQDEMYQALILPLVDKLL 91 (344)
T ss_dssp ---CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEE----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CCCCCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEe----cCcEEEcceEECCCCCHHHHHHhhccchhhHhh
Confidence 3455678999999999999877433333333332 333332 246899999999999999999999999999999
Q ss_pred cCCCeEEEEeccCCCCCceeecCCC------CCCCchhhHHHHHHHhhhcCC---CceEEEEEeeeeeecchhhccCCCC
Q 001118 149 QGINGTVFAYGVTSSGKTHTMHGEQ------KSPGIIPLAVKDVFGIIQETP---GREFLLRVSYLEIYNEVINDLLDPT 219 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM~G~~------~~~GIIPRal~dLF~~I~~~~---~~~f~V~VSylEIYNE~V~DLL~p~ 219 (1150)
+|||+||||||||||||||||+|++ .++|||||++++||..|.... ...|.|+|||+|||||+|+|||++.
T Consensus 92 ~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 171 (344)
T 3dc4_A 92 EGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGST 171 (344)
T ss_dssp HTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSC
T ss_pred CCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCC
Confidence 9999999999999999999999874 568999999999999997543 3469999999999999999999876
Q ss_pred CCceEEEeCCCCcEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEE
Q 001118 220 GQNLRIREDAQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQ 299 (1150)
Q Consensus 220 ~~~L~IrEd~~Gv~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~Sk 299 (1150)
..... .+..+.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+. ...|+
T Consensus 172 ~~~~~-----~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----------~~~sk 236 (344)
T 3dc4_A 172 PHMPM-----VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----------THHSR 236 (344)
T ss_dssp TTSBC-----CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS----------SCEEE
T ss_pred CCCcc-----ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec----------CcEEE
Confidence 53221 1334568999999999999999999999999999999999999999999999742 24699
Q ss_pred EEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCC
Q 001118 300 LNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPA 378 (1150)
Q Consensus 300 L~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs 378 (1150)
|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+.++ .|||||||||||||||+||||++|+|||||||+
T Consensus 237 l~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~ 315 (344)
T 3dc4_A 237 MNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPH 315 (344)
T ss_dssp EEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCC
T ss_pred EEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCCEEEEEEEeCCc
Confidence 99999999999 5689999999999999999999999999999865 799999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhHccccccccc
Q 001118 379 SSNSEETHNTLKFAHRSKHVEIKAS 403 (1150)
Q Consensus 379 ~~~~eETLsTLrFA~RAK~Iknk~~ 403 (1150)
..+++||++||+||+||+.....+.
T Consensus 316 ~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 316 QCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred hhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999999999999998765543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=3.3e-76 Score=717.37 Aligned_cols=317 Identities=34% Similarity=0.559 Sum_probs=250.8
Q ss_pred CCCCeeeeeecC----CCCcccccCCCeEEEeeCCC---------eEEecC---CCCceeEeeeeeeCCCCcchhHHHHH
Q 001118 76 SKENVMVTVRFR----PLSPREVNKGDEIAWYADGD---------YTVRNE---YNPSIAYGFDKVFGPATTTRHVYDVA 139 (1150)
Q Consensus 76 ~~~~VrV~VRVR----Pl~~~E~~~g~~v~~~~d~~---------~~v~~~---~~~s~~F~FD~VF~~~atQeeVYe~v 139 (1150)
-.++++|||||| |....|.+.|..++...... .++... ....+.|.||+||+++++|++||+.+
T Consensus 372 il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~ 451 (715)
T 4h1g_A 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEEL 451 (715)
T ss_dssp SSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGGT
T ss_pred HHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHHH
Confidence 357899999999 55555555554433322211 122211 12346899999999999999999876
Q ss_pred HHHHHHHhhcCCCeEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcC--CCceEEEEEeeeeeecchhhccCC
Q 001118 140 AQHVVNGAMQGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQET--PGREFLLRVSYLEIYNEVINDLLD 217 (1150)
Q Consensus 140 v~plV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~--~~~~f~V~VSylEIYNE~V~DLL~ 217 (1150)
.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.|+.. .+..|.|+|||+|||||+|+|||+
T Consensus 452 -~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~ 528 (715)
T 4h1g_A 452 -SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLN 528 (715)
T ss_dssp -HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSS
T ss_pred -HHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCC
Confidence 48999999999999999999999999999995 5799999999999999753 456899999999999999999998
Q ss_pred CC---CCceEEEeCC-CC-cEEeCcEEEEeCCHHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCC
Q 001118 218 PT---GQNLRIREDA-QG-TYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGE 292 (1150)
Q Consensus 218 p~---~~~L~IrEd~-~G-v~V~GLsev~V~S~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~ 292 (1150)
|. ...+.++++. .| ++|.||+++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|.+.... .
T Consensus 529 ~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~----~ 604 (715)
T 4h1g_A 529 PKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSL----T 604 (715)
T ss_dssp CCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETT----T
T ss_pred CCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecC----C
Confidence 75 3456677654 44 89999999999999999999999999999999999999999999999999876432 3
Q ss_pred cceEEEEEEEeecCCCCC-CcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCcccee
Q 001118 293 EDVTLSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISL 371 (1150)
Q Consensus 293 ~~v~~SkL~LVDLAGSEr-~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~m 371 (1150)
.....|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+.++..|||||||||||||||+|||||+|+|
T Consensus 605 ~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~ 684 (715)
T 4h1g_A 605 KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLM 684 (715)
T ss_dssp CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEE
T ss_pred CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEE
Confidence 456789999999999999 5689999999999999999999999999999887889999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhHccccc
Q 001118 372 ICTVTPASSNSEETHNTLKFAHRSKHVE 399 (1150)
Q Consensus 372 IatISPs~~~~eETLsTLrFA~RAK~Ik 399 (1150)
||||||+..+++||++||+||+|||+|+
T Consensus 685 i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 685 FVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EEEECCChhhHHHHHHHHHHHHHhccce
Confidence 9999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=1.4e-30 Score=246.13 Aligned_cols=100 Identities=43% Similarity=0.632 Sum_probs=96.0
Q ss_pred ccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHhHcccccccc
Q 001118 323 GSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKA 402 (1150)
Q Consensus 323 g~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLrFA~RAK~Iknk~ 402 (1150)
+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+||+||||+..+++||++||+||+||+.|+++|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 46899999999999999998877899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHH
Q 001118 403 SQNKIMDEKSLIKKYQKEIT 422 (1150)
Q Consensus 403 ~vN~i~d~~~li~~lqkEI~ 422 (1150)
.+|+..+.+.++++|++||+
T Consensus 81 ~~n~~~~~~~l~~~~~~e~~ 100 (100)
T 2kin_B 81 SVNLELTAEEWKKKYEKEKE 100 (100)
T ss_dssp CCEEECCHHHHHHHHHHHHC
T ss_pred eeccCCCHHHHHHHHHHhhC
Confidence 99999999999999998873
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=3.3e-28 Score=236.01 Aligned_cols=98 Identities=43% Similarity=0.612 Sum_probs=91.8
Q ss_pred chhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHhHcccccccccccc
Q 001118 327 NKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETHNTLKFAHRSKHVEIKASQNK 406 (1150)
Q Consensus 327 NkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETLsTLrFA~RAK~Iknk~~vN~ 406 (1150)
|+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+++||++||+||+|||.|+++|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999998778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 001118 407 IMDEKSLIKKYQKEITFL 424 (1150)
Q Consensus 407 i~d~~~li~~lqkEI~~L 424 (1150)
..+.+.+++.|++++..+
T Consensus 81 ~~~~~~l~~~~~~e~~~~ 98 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKN 98 (117)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999888887777665443
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.6e-24 Score=234.05 Aligned_cols=262 Identities=11% Similarity=0.125 Sum_probs=171.2
Q ss_pred CCCeeeeeecCCCC-cccccCCCeEEEeeCCCeEEecCCCCceeEeeeeeeCCCCcch--hHHHHHHHHHHHHhhc-CCC
Q 001118 77 KENVMVTVRFRPLS-PREVNKGDEIAWYADGDYTVRNEYNPSIAYGFDKVFGPATTTR--HVYDVAAQHVVNGAMQ-GIN 152 (1150)
Q Consensus 77 ~~~VrV~VRVRPl~-~~E~~~g~~v~~~~d~~~~v~~~~~~s~~F~FD~VF~~~atQe--eVYe~vv~plV~~vL~-GyN 152 (1150)
+|+|||+|||||.. + +...+..+++...+ .. ..+.|.||+||++.+.|+ +||++ +.++|+.+++ |||
T Consensus 23 KGnIRVFcrvrp~~~p-----~~~~v~y~~~~I~v--~~-~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyN 93 (298)
T 2o0a_A 23 KGTMRCYAYVMEQNLP-----ENLLFDYENGVITQ--GL-SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKN 93 (298)
T ss_dssp HTCCEEEEEECGGGSC-----TTEEEETTTTEEEE--TT-TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCC
T ss_pred hCceEEEEEeccccCC-----ccceeecCccceee--cC-CCceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCc
Confidence 69999999999964 3 11123334433222 22 337899999999999999 99998 5799999999 999
Q ss_pred eEEEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhc-CCCceEEEEEeeeeee-cchhhccCCC--CCCceEEEeC
Q 001118 153 GTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQE-TPGREFLLRVSYLEIY-NEVINDLLDP--TGQNLRIRED 228 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~-~~~~~f~V~VSylEIY-NE~V~DLL~p--~~~~L~IrEd 228 (1150)
+||||||||||||| ||++..+|..... .. ..|.+.+||+||| ||.++|||.. .+..+.|+.+
T Consensus 94 vcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~ 159 (298)
T 2o0a_A 94 FNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLK 159 (298)
T ss_dssp EEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEEETTSCCC------CEEE
T ss_pred eEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEec
Confidence 99999999999999 9999999987643 22 7899999999999 9999999953 2335677766
Q ss_pred CC-CcEEeCcEEEEeCC-HHHHHHHhhhcccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEeecC
Q 001118 229 AQ-GTYVEGIKEEVVLS-PAHALSLIATGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLIDLA 306 (1150)
Q Consensus 229 ~~-Gv~V~GLsev~V~S-~ee~l~lL~~G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LVDLA 306 (1150)
.. +++|.|++.+.|.+ ++|+..++..+..-+ .|. +.-.|+.+.+......... ......--++|+.+.
T Consensus 160 ~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~~------~~~---~gi~i~k~~~~~~~~~~~~-~~~~~~~d~yf~e~~ 229 (298)
T 2o0a_A 160 FEKHSISLDSKLVIIENGLEDLPLNFSCDEHPN------LPH---SGMGIIKVQFFPRDSKSDG-NNDPVPVDFYFIELN 229 (298)
T ss_dssp ECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC--------CCCEEEEEEEEC
T ss_pred CCCCEEecccEEEEccccHHHHHHHhhcccccc------cCC---CCceEEEEEEecCcccccc-cCCCCceEEEEEEeC
Confidence 65 47999999999999 999998884443221 221 2344555555432111111 101112235666655
Q ss_pred CCCCCcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCCCHHHHH
Q 001118 307 GSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSNSEETH 386 (1150)
Q Consensus 307 GSEr~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eETL 386 (1150)
-. ++...|.+.+ ..+ -+-.|+++-+|+.-|. ..+-++++++.-+.. .-
T Consensus 230 ~~-------------------~~~~~l~~~~---~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~----~~ 277 (298)
T 2o0a_A 230 NL-------------------KSIEQFDKSI---FKK-----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKN----VN 277 (298)
T ss_dssp SH-------------------HHHHHHHHHH---HTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGGG----HH
T ss_pred CH-------------------HHHHHHHhhc---ccc-----cccCCcHHHHHHHHHh-cCcceEEEEecCCCc----hh
Confidence 22 1233343322 222 3456888888887663 568899999976432 33
Q ss_pred HHHHHHhHccccccccc
Q 001118 387 NTLKFAHRSKHVEIKAS 403 (1150)
Q Consensus 387 sTLrFA~RAK~Iknk~~ 403 (1150)
.-|..++++..+.|...
T Consensus 278 ~lL~~s~~i~~~~~~~~ 294 (298)
T 2o0a_A 278 KLLTISEEVQTQLCKRK 294 (298)
T ss_dssp HHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhhcccCccc
Confidence 37778888777766544
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.28 E-value=0.0057 Score=79.16 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHh-hcCCCeEEEEeccCCCCCceee
Q 001118 133 RHVYDVAAQHVVNGA-MQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 133 eeVYe~vv~plV~~v-L~GyN~tIfAYGQTGSGKTyTM 169 (1150)
-.||... ......+ -.+.|-||+..|-+|||||.+.
T Consensus 150 PHi~aia-~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 150 PHIYAIA-DTAYRSMLQDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp CCHHHHH-HHHHHHHHHHTCCEEEECCCSTTSSTTHHH
T ss_pred ccHhhhH-HHHHHHHHhcCCCcEEEEecCCCCCccHHH
Confidence 3577533 2333333 3799999999999999999764
No 33
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.92 E-value=0.0087 Score=77.50 Aligned_cols=45 Identities=11% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhh
Q 001118 992 LEAALSEREQVEGELRKRIDEAKRHEEDLENELANMWVLIAKMRN 1036 (1150)
Q Consensus 992 ~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmwvlvaklk~ 1036 (1150)
++..+.+.+..-.+|...+++.+.+...|+.++..+|-=+..|+.
T Consensus 1114 le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~ 1158 (1184)
T 1i84_S 1114 ALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKT 1158 (1184)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444445555555556666666666665555553
No 34
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=94.82 E-value=4.1 Score=41.67 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhhhHh
Q 001118 661 MDLLHEQMKMLAGEVA 676 (1150)
Q Consensus 661 idlLrEQ~KmL~gEva 676 (1150)
||-|+..+..|..++-
T Consensus 1 ~~~~~~~~~~l~~~~~ 16 (284)
T 1c1g_A 1 MDAIKKKMQMLKLDKE 16 (284)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHH
Confidence 3444444444444443
No 35
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.30 E-value=0.04 Score=54.91 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=35.6
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++||........|..+++. +..++.++--.....++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 35788876655678888754 4456665443334567889999999999874
No 36
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.90 E-value=0.44 Score=61.42 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHH
Q 001118 866 VLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAK 940 (1150)
Q Consensus 866 ~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~ 940 (1150)
+.....||++|+.+..++..++..|+.++++|.+ .|.+.|..|..+|++|...+....
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~-----------------~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH-----------------ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777666666653 444777777777777776666554
No 37
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.65 E-value=0.062 Score=54.32 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=33.8
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCC-eEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGIN-GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN-~tIfAYGQTGSGKTyTM~ 170 (1150)
.++||........+..+++. +..++...-.++. ..|+-||++|+||||.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 46787766555566667763 3445554433322 678999999999999864
No 38
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.17 E-value=0.1 Score=57.63 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=33.4
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
++||.+......+..++. .+..++...-.+....|+-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 567765544435555665 44455655444445678899999999999875
No 39
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.03 E-value=0.054 Score=61.13 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=30.7
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHH-Hhhc---CCCeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVN-GAMQ---GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~-~vL~---GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+.||.+.+...--+.+.+.+..++.. .++. .-...|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 467888887544434444433333331 1112 22457999999999999865
No 40
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.19 E-value=4.3 Score=52.39 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=52.8
Q ss_pred HHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHH
Q 001118 913 VELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADL 992 (1150)
Q Consensus 913 vElk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~ 992 (1150)
.++++|-+|+.+|-.+.+++.+|.....+...+- + .+..-.+..|+.|++.-+|--..|
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~------------------~---~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY------------------K---HETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999998888775543110 0 000112345566665555544555
Q ss_pred HHHHHHHHh-HHHHHHHHH-HHhhhhhhhhhhhhh
Q 001118 993 EAALSEREQ-VEGELRKRI-DEAKRHEEDLENELA 1025 (1150)
Q Consensus 993 e~~l~ek~~-~e~e~~~~~-~e~k~~e~~len~la 1025 (1150)
|.-+.++++ ...+++.+. ++.++-+++||-|-+
T Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1080)
T 2dfs_A 1043 NRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544433332 223444455 555566666666654
No 41
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.99 E-value=0.33 Score=52.92 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=32.9
Q ss_pred eeeeeCCCCcchhHHHHHHHHHHHHhhcCCC----eEEEEeccCCCCCceee
Q 001118 122 FDKVFGPATTTRHVYDVAAQHVVNGAMQGIN----GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 122 FD~VF~~~atQeeVYe~vv~plV~~vL~GyN----~tIfAYGQTGSGKTyTM 169 (1150)
||.+|+...--..+.+.++..++...+...+ ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 5555554444566677777777777654222 36888999999999865
No 42
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=83.05 E-value=43 Score=34.01 Aligned_cols=27 Identities=4% Similarity=-0.044 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhchHHH
Q 001118 658 TDQMDLLHEQMKMLAGEVALCTSSLKR 684 (1150)
Q Consensus 658 ~d~idlLrEQ~KmL~gEva~~~s~Lkr 684 (1150)
-+.++.+..++.-|..+++-....+..
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~l~~~~~~ 38 (284)
T 1c1g_A 12 KLDKENALDRADEAEADKKAAEDRSKQ 38 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666555544443
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.71 E-value=0.57 Score=45.29 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=22.7
Q ss_pred HHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 141 QHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 141 ~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 344455555667788999999999999874
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.71 E-value=6.6 Score=46.39 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=43.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcc-ccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhh
Q 001118 697 QLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPH-TLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKI 775 (1150)
Q Consensus 697 ~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~-~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~ 775 (1150)
+++.+|+.|+.++......+..+++.|..-...-.. .....+..+-+.+...++-++ ...+..+|..++++.+++.
T Consensus 460 ~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 536 (597)
T 3oja_B 460 ELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKER---QAFKLRETQARRTEADAKQ 536 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhh---hhhhHHHHHHHHHhhhhhh
Confidence 344566667766666666666666665544333221 111122223333333333221 1222334555555555555
Q ss_pred hhhHHHHHHHHHHHHHH
Q 001118 776 SENTEMQETILLLRQQI 792 (1150)
Q Consensus 776 ~e~~elqe~v~~l~qql 792 (1150)
.+.+.+++++..|+.++
T Consensus 537 ~~~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 537 KETEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHH
Confidence 55555555555555553
No 45
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=81.46 E-value=0.49 Score=49.95 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=21.9
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.|+||.+.+....-..+.+ .+..+. ..+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 3789988864433333332 222222 23467888999999999865
No 46
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.77 E-value=1.6 Score=50.92 Aligned_cols=74 Identities=27% Similarity=0.414 Sum_probs=48.8
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHH-Hhhc--CC--CeEEEEeccCCCCCceeec--------------CC---CCCCC
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVN-GAMQ--GI--NGTVFAYGVTSSGKTHTMH--------------GE---QKSPG 177 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~-~vL~--Gy--N~tIfAYGQTGSGKTyTM~--------------G~---~~~~G 177 (1150)
-+||-|-|-+.--+.+.+.+..|+.. ..+. |. .-.|+-||++|+|||+..- |. ....|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 46777777665556666666656543 2332 32 3459999999999997642 22 23458
Q ss_pred chhhHHHHHHHhhhcC
Q 001118 178 IIPLAVKDVFGIIQET 193 (1150)
Q Consensus 178 IIPRal~dLF~~I~~~ 193 (1150)
--++.++++|......
T Consensus 249 e~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 249 EGPRMVRDVFRLAREN 264 (428)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 8888999999877543
No 47
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.65 E-value=1.5 Score=51.12 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=66.3
Q ss_pred eeeeeecCCCCcc-cccCCCeEEEeeCCCeEEec---CCCC---------ceeEeeeeeeCCCCcchhHHHHHHHHHHH-
Q 001118 80 VMVTVRFRPLSPR-EVNKGDEIAWYADGDYTVRN---EYNP---------SIAYGFDKVFGPATTTRHVYDVAAQHVVN- 145 (1150)
Q Consensus 80 VrV~VRVRPl~~~-E~~~g~~v~~~~d~~~~v~~---~~~~---------s~~F~FD~VF~~~atQeeVYe~vv~plV~- 145 (1150)
...+|++..+... .+.+|+.+.+..+...++.. ...+ .-.-+||.|-+-+..-+.+.+.+..|+..
T Consensus 125 ~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~p 204 (434)
T 4b4t_M 125 QTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRA 204 (434)
T ss_dssp CEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCS
T ss_pred CeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCH
Confidence 4556666654433 34556555554443332211 1111 11346888888776667777777777653
Q ss_pred Hhhc--C--CCeEEEEeccCCCCCceeec--------------CC---CCCCCchhhHHHHHHHhhhc
Q 001118 146 GAMQ--G--INGTVFAYGVTSSGKTHTMH--------------GE---QKSPGIIPLAVKDVFGIIQE 192 (1150)
Q Consensus 146 ~vL~--G--yN~tIfAYGQTGSGKTyTM~--------------G~---~~~~GIIPRal~dLF~~I~~ 192 (1150)
..+. | +.-.|+-||+.|+|||++.. |+ ....|--.+.++.+|.....
T Consensus 205 e~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~ 272 (434)
T 4b4t_M 205 DKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKE 272 (434)
T ss_dssp HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHh
Confidence 2332 3 23568999999999997642 21 23457778888888887654
No 48
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=79.50 E-value=0.66 Score=44.97 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=22.6
Q ss_pred HHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 141 QHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 141 ~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 344455555667788999999999998764
No 49
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=79.15 E-value=32 Score=36.98 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 001118 976 EELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKR 1015 (1150)
Q Consensus 976 ~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~ 1015 (1150)
.+|.+|+..-+.|-..||.-+.+-...-++++..+++.+.
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~ 132 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKK 132 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555544444444444444433333
No 50
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.95 E-value=0.43 Score=50.27 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=32.0
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHH-----HHhhcCCCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVV-----NGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV-----~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+.||.+.+.+.....+.+.+ ..+- ..+-......|+-||++|+|||+.+.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 467888888777666665432 2211 11111223458899999999998763
No 51
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=78.30 E-value=0.62 Score=52.16 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=21.1
Q ss_pred HHhhcCCCeEEEEeccCCCCCceeec
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..+-.|...+|+-||++|+|||.++.
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 33346778899999999999998864
No 52
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=78.03 E-value=6.6 Score=44.13 Aligned_cols=240 Identities=13% Similarity=0.182 Sum_probs=124.5
Q ss_pred CCCeeeeeecCCCCcccccCCCeEEEeeCCCeEEecCCCCceeEeeeeeeCCCC-cchhHHHHHHHHHHHHhh-cCCCeE
Q 001118 77 KENVMVTVRFRPLSPREVNKGDEIAWYADGDYTVRNEYNPSIAYGFDKVFGPAT-TTRHVYDVAAQHVVNGAM-QGINGT 154 (1150)
Q Consensus 77 ~~~VrV~VRVRPl~~~E~~~g~~v~~~~d~~~~v~~~~~~s~~F~FD~VF~~~a-tQeeVYe~vv~plV~~vL-~GyN~t 154 (1150)
+|.||+|+=+-+-...+ ...+-+.+. ++. .......|.|++|++... +-.+++..-.+..++-++ .+.|+.
T Consensus 58 KG~IRcFAYi~~~~~p~----~~~idY~~~--~It-~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~Nfs 130 (333)
T 4etp_B 58 KGTMRVYAYVMEQNLPE----NLLFDYENG--VIT-QGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFN 130 (333)
T ss_dssp HTCCEEEEEECCSSCCS----SCEEETTTT--EEE-C--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEE
T ss_pred cCcEEEEEEECcccCCc----cEEEecccc--eEe-ecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCee
Confidence 67888888776521111 111222222 222 223456899999997665 344555556778999999 999999
Q ss_pred EEEeccCCCCCceeecCCCCCCCchhhHHHHHHHhhhcC---CCceEEEEEeeeeeecch-hhccCCCCC----C--ceE
Q 001118 155 VFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQET---PGREFLLRVSYLEIYNEV-INDLLDPTG----Q--NLR 224 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~G~~~~~GIIPRal~dLF~~I~~~---~~~~f~V~VSylEIYNE~-V~DLL~p~~----~--~L~ 224 (1150)
||..|+.-- +.....|+..+... -...|.+.+-|+.+-++. ..|||.+.. . .+.
T Consensus 131 lIsis~~~w----------------~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~lk 194 (333)
T 4etp_B 131 LISLSTTPH----------------GSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLK 194 (333)
T ss_dssp EEEEESSCC----------------CHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC----------CE
T ss_pred EEEecCCCc----------------HHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccccccCCCCceEE
Confidence 999986521 23344555555433 236789999998888776 699998752 2 233
Q ss_pred EEeCCCCcEEeCcEEEEeCCHHHHHHHhhh-cccccccccCCCCCCCCCceEEEEEEEEeecCCCCCCCcceEEEEEEEe
Q 001118 225 IREDAQGTYVEGIKEEVVLSPAHALSLIAT-GEEHRHVGSNNFNLLSSRSHTIFTLTIESSPTGENQGEEDVTLSQLNLI 303 (1150)
Q Consensus 225 IrEd~~Gv~V~GLsev~V~S~ee~l~lL~~-G~~~R~~asT~~N~~SSRSHaIFtI~V~~~~~~~~~~~~~v~~SkL~LV 303 (1150)
|.++ .+.+ +-+.+.+.+..+.+.++.. ....+ . -...-.|+-+.+.....+. .+......-.++||
T Consensus 195 iee~--sI~l-dS~~i~i~~~~~~l~~~~kl~~~~~--------~-~~~GI~IlKfqf~~~~~~~-~~n~~~~~~~fYFi 261 (333)
T 4etp_B 195 FEKH--SISL-DSKLVIIENGLEDLPLNFSADEHPN--------L-PHSGMGIIKVQFFPRDSKS-DGNNDPVPVDFYFI 261 (333)
T ss_dssp EETT--EEEC-CSCCEEESSGGGGSCTTSSCCC-----------------CEEEEEEEEECC---------CCCEEEEEE
T ss_pred eecc--eEee-cceEEEeccccccchhhhccccCCC--------C-CCCCceEEEEEEEecCccc-ccccCCcceeEEEE
Confidence 3332 1211 2233444444443322221 11011 0 1123346666665432210 11111123367888
Q ss_pred ecCCCCCCcccccchhcccccccchhHHHHHHHHHHhccCCCCcccCCCchhhhhhcccCCCCccceeEEeeCCCCC
Q 001118 304 DLAGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASS 380 (1150)
Q Consensus 304 DLAGSEr~kt~a~G~RlkEg~~INkSL~ALG~VIsALa~~k~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~ 380 (1150)
.+-+.. .+..|.++|+. + -.-.|+++-+|+--| -..+.++|+++.-...
T Consensus 262 Ei~~~~-------------------ti~~l~~~i~~---~-----~~~~spi~~ilkkLl-~~TKS~flfnl~~~~~ 310 (333)
T 4etp_B 262 ELNNLK-------------------SIEQFDKSIFK---K-----ESAETPIALVLKKLI-SDTKSFFLLNLNDSKN 310 (333)
T ss_dssp EECSHH-------------------HHHHHHSCC------------CCCCHHHHHHHHHH-HHSBCEEEEEECCSTT
T ss_pred EecChh-------------------HHHHHHhhcCc---c-----cccCCCHHHHHHHHH-hhCcceEEEEcCCcch
Confidence 877443 12333333321 1 133467777776655 3568899999976654
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.34 E-value=0.59 Score=50.87 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=32.2
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHH-hh----cCCCeEEEEeccCCCCCceee
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNG-AM----QGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~-vL----~GyN~tIfAYGQTGSGKTyTM 169 (1150)
++||.|.+.+..-+.+.+.+..|+... .+ -.....|+-||++|+|||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 578888876655555665555443211 11 123457899999999999876
No 54
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=76.88 E-value=0.48 Score=50.31 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=31.6
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHH-----HhhcCCCeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVN-----GAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~-----~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.|.||.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 477888887655555554444333221 111134456899999999999865
No 55
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=76.56 E-value=16 Score=34.08 Aligned_cols=87 Identities=24% Similarity=0.290 Sum_probs=64.8
Q ss_pred hhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCc
Q 001118 884 VEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSN 963 (1150)
Q Consensus 884 ~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~ 963 (1150)
+.||.++..-|-+|| +| =+.|--|-.||..|..++...+...+
T Consensus 5 ~~EKe~mq~LNdRlA---sy---------------IdKVR~LEqqN~~Le~~i~~l~~~~~------------------- 47 (93)
T 3s4r_A 5 TNEKVELQELNDRFA---NL---------------IDKVRFLEQQNKILLAELEQLKGQGK------------------- 47 (93)
T ss_dssp -CCCCCHHHHHHHHH---HH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred hHHHHHHHHHHHHHH---HH---------------HHHHHHHHHHHHHHHHHHHHHhhccC-------------------
Confidence 357788888888774 33 36799999999999999876653210
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhh
Q 001118 964 GARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLENELANMWVLIAKMRN 1036 (1150)
Q Consensus 964 ~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmwvlvaklk~ 1036 (1150)
+. + ...||+.+ .+|++.|++...--+-|+-|+.|||-.+..+|+
T Consensus 48 -------~~---------~------~~~ye~~i-------~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 48 -------SR---------L------GDLYEEEM-------RELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp -------HH---------H------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CC---------c------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0 01245443 589999999999999999999999999999874
No 56
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=76.54 E-value=0.68 Score=48.57 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=29.0
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHH-HHhhcCC----CeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVV-NGAMQGI----NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV-~~vL~Gy----N~tIfAYGQTGSGKTyTM~ 170 (1150)
.++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|+|||+.+.
T Consensus 12 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 4788888876544333332 211110 0122222 2238999999999998873
No 57
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=76.43 E-value=0.84 Score=49.74 Aligned_cols=49 Identities=22% Similarity=0.508 Sum_probs=29.3
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|+||..+. ...+...+.. +..++..-- +....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 478887763 2233444443 333433211 123468889999999999874
No 58
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=75.40 E-value=0.6 Score=50.76 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=28.0
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.|+||.+++. +.+... +...++.+..+.|+-||++|+|||+..
T Consensus 20 ~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 20 VFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 4788888764 333332 223334334455999999999999876
No 59
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=74.99 E-value=13 Score=35.59 Aligned_cols=74 Identities=12% Similarity=0.229 Sum_probs=64.1
Q ss_pred CCchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q 001118 654 GTTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVE 728 (1150)
Q Consensus 654 ~~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~ 728 (1150)
..-+...|+-|++-++-.++.......-||.-.+++..||++-. +.=++.=..+++..+..|+-|.|+|++.+.
T Consensus 30 ~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevN-K~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 30 DPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVN-KSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999987 455777788888888889999988887764
No 60
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=74.88 E-value=59 Score=34.92 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=18.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001118 768 QEQLQMKISENTEMQETILLLRQQIDS 794 (1150)
Q Consensus 768 qeql~~k~~e~~elqe~v~~l~qql~~ 794 (1150)
+.++...-.+..+++..|...++||..
T Consensus 59 ~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 59 KLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444555566677777778888887754
No 61
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=73.89 E-value=1.4 Score=44.60 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=27.3
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceeec
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
++||.+++. ..+..++.. +..+. .+....|+-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~~-----l~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGA-----LKSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHH-----HHHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHHH-----HHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 466665552 233444432 22333 3356788999999999998774
No 62
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.27 E-value=3.4 Score=47.84 Aligned_cols=74 Identities=27% Similarity=0.357 Sum_probs=50.3
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHH-Hhhc--CC--CeEEEEeccCCCCCceeec--------------CC---CCCCC
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVN-GAMQ--GI--NGTVFAYGVTSSGKTHTMH--------------GE---QKSPG 177 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~-~vL~--Gy--N~tIfAYGQTGSGKTyTM~--------------G~---~~~~G 177 (1150)
-+||.|-|-+..-+++.+.+.-|+.. ..+. |. .-.|+-||+.|+|||+..- |+ ....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 46777777666666677777666653 2333 32 3569999999999997642 22 23457
Q ss_pred chhhHHHHHHHhhhcC
Q 001118 178 IIPLAVKDVFGIIQET 193 (1150)
Q Consensus 178 IIPRal~dLF~~I~~~ 193 (1150)
--.+.++.+|......
T Consensus 225 ese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 225 EGSRMVRELFVMAREH 240 (405)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHh
Confidence 7788899999887644
No 63
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.07 E-value=4.6 Score=47.14 Aligned_cols=74 Identities=26% Similarity=0.367 Sum_probs=49.1
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHH-Hhhc--CC--CeEEEEeccCCCCCceeec--------------CC---CCCCC
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVN-GAMQ--GI--NGTVFAYGVTSSGKTHTMH--------------GE---QKSPG 177 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~-~vL~--Gy--N~tIfAYGQTGSGKTyTM~--------------G~---~~~~G 177 (1150)
.+||.|-|-+..-+++.+.+.-|+.. ..+. |. .-.|+-||++|+|||++.- |+ ....|
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG 257 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence 46777777666556666666666643 2333 32 3579999999999997642 21 23457
Q ss_pred chhhHHHHHHHhhhcC
Q 001118 178 IIPLAVKDVFGIIQET 193 (1150)
Q Consensus 178 IIPRal~dLF~~I~~~ 193 (1150)
--.+.++.+|......
T Consensus 258 ese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 258 ESARIIREMFAYAKEH 273 (437)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7788888899877543
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=72.92 E-value=0.7 Score=50.46 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=25.3
Q ss_pred CcchhHHHHHHHHHHHHhh-cCCCeEEEEeccCCCCCceeec
Q 001118 130 TTTRHVYDVAAQHVVNGAM-QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 130 atQeeVYe~vv~plV~~vL-~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..++..++.+. ..+..++ .+...+|+-||++|+|||+.+.
T Consensus 22 ~gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 22 PHREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp TTCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 34455554433 2333333 3455689999999999998874
No 65
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=72.62 E-value=0.73 Score=49.27 Aligned_cols=51 Identities=12% Similarity=0.205 Sum_probs=31.6
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHH-Hhhc---CCCeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVN-GAMQ---GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~-~vL~---GyN~tIfAYGQTGSGKTyTM 169 (1150)
...||.+.+.+..-..+.+.+..|+.. ..+. .....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 357888887554444444444444331 1222 23568999999999999866
No 66
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.16 E-value=0.63 Score=48.48 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=16.6
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
....|+-||++|+|||+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 44578999999999998763
No 67
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=71.09 E-value=2 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=18.6
Q ss_pred cCCCeEEEEeccCCCCCceeec
Q 001118 149 QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
......|+-||++|+|||+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHH
Confidence 5667889999999999998763
No 68
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.03 E-value=0.78 Score=51.27 Aligned_cols=51 Identities=12% Similarity=0.277 Sum_probs=31.5
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHh----hcCCCeEEEEeccCCCCCceeec
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGA----MQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~v----L~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..||.+++....-..+.+.+..|+...- +.+....|+-||++|+|||+.+.
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHH
Confidence 5678887754444444444433332211 23456679999999999998763
No 69
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.07 E-value=1.6 Score=44.39 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=18.3
Q ss_pred HHHhhcCCCeEEEEeccCCCCCcee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyT 168 (1150)
+..++.|.| ++..++||||||.+
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 445667866 67889999999987
No 70
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=70.05 E-value=1.8 Score=42.81 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=16.9
Q ss_pred cCCCeEEEEeccCCCCCceeec
Q 001118 149 QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+....|+-||++|+|||+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3433459999999999998764
No 71
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.57 E-value=14 Score=43.32 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=65.1
Q ss_pred eeeecCCCC-cccccCCCeEEEeeCCCeEEec---CCCC---------ceeEeeeeeeCCCCcchhHHHHHHHHHHH-Hh
Q 001118 82 VTVRFRPLS-PREVNKGDEIAWYADGDYTVRN---EYNP---------SIAYGFDKVFGPATTTRHVYDVAAQHVVN-GA 147 (1150)
Q Consensus 82 V~VRVRPl~-~~E~~~g~~v~~~~d~~~~v~~---~~~~---------s~~F~FD~VF~~~atQeeVYe~vv~plV~-~v 147 (1150)
.+|++.... +..+.+|+.+.+..+...++.. ...+ .-.-+||.|-|-+.--+++.+.+..|+.. ..
T Consensus 128 ~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~ 207 (437)
T 4b4t_I 128 YYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPEL 207 (437)
T ss_dssp CEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHH
T ss_pred EEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHH
Confidence 345555543 4445677777665544333211 1111 11245666666555556666666666542 23
Q ss_pred hc--C--CCeEEEEeccCCCCCceee--------------cCC---CCCCCchhhHHHHHHHhhhcC
Q 001118 148 MQ--G--INGTVFAYGVTSSGKTHTM--------------HGE---QKSPGIIPLAVKDVFGIIQET 193 (1150)
Q Consensus 148 L~--G--yN~tIfAYGQTGSGKTyTM--------------~G~---~~~~GIIPRal~dLF~~I~~~ 193 (1150)
+. | .--.|+-||+.|+|||+.. .|. ....|--.+.++.+|......
T Consensus 208 f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 208 YEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp HHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc
Confidence 32 3 3457999999999999754 222 234688889999999887644
No 72
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=69.19 E-value=1.9 Score=43.22 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=17.8
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.| ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 445567766 577889999999754
No 73
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=69.06 E-value=1.3 Score=47.40 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=28.6
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHH-HHhhcCC----CeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVV-NGAMQGI----NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV-~~vL~Gy----N~tIfAYGQTGSGKTyTM~ 170 (1150)
.++||.|.+.+.....+.+. ...+- ..++.++ ...|+-||++|||||+.+.
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l-~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 47788887765443333322 11110 0122222 2238999999999998763
No 74
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=68.72 E-value=1.2 Score=49.18 Aligned_cols=51 Identities=12% Similarity=0.170 Sum_probs=32.6
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHH-HhhcCC---CeEEEEeccCCCCCceeec
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVN-GAMQGI---NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~-~vL~Gy---N~tIfAYGQTGSGKTyTM~ 170 (1150)
.+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+...
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 46787777655545555555444432 334442 2468899999999998763
No 75
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=68.55 E-value=1.9 Score=43.17 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=18.1
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.+ ++..++||||||.+.
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHHH
Confidence 345667766 667789999999873
No 76
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=67.51 E-value=0.86 Score=47.88 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=29.2
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHH-Hhhc----CCCeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVN-GAMQ----GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~-~vL~----GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+.||.+.+.+..-+.+.+. +..+.. ..+. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 36788888765544444432 222111 1111 23446899999999999876
No 77
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.28 E-value=2.3 Score=50.14 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=48.4
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHH-Hhhc--C--CCeEEEEeccCCCCCceeec--------------CC---CCCCC
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVN-GAMQ--G--INGTVFAYGVTSSGKTHTMH--------------GE---QKSPG 177 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~-~vL~--G--yN~tIfAYGQTGSGKTyTM~--------------G~---~~~~G 177 (1150)
.+||-|-|-+.--+.+.+.+.-|+.. ..+. | .--.|+-||+.|+|||++.- |. ....|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 56788877666556666666555543 2333 3 34579999999999997542 21 23457
Q ss_pred chhhHHHHHHHhhhcC
Q 001118 178 IIPLAVKDVFGIIQET 193 (1150)
Q Consensus 178 IIPRal~dLF~~I~~~ 193 (1150)
--.+.++.+|......
T Consensus 286 esek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 286 EGARMVRELFEMARTK 301 (467)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7778888888876543
No 78
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=66.46 E-value=1.5 Score=46.90 Aligned_cols=20 Identities=20% Similarity=0.076 Sum_probs=16.5
Q ss_pred CCCeEEEEeccCCCCCceee
Q 001118 150 GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM 169 (1150)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34457999999999999876
No 79
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=66.28 E-value=2.5 Score=46.30 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHHHHhhcCCC-e--EEEEeccCCCCCceeec
Q 001118 132 TRHVYDVAAQHVVNGAMQGIN-G--TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 132 QeeVYe~vv~plV~~vL~GyN-~--tIfAYGQTGSGKTyTM~ 170 (1150)
++...+.+. ..+..++.|.. . +++-||++|+|||+++.
T Consensus 22 r~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 22 REQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR 62 (389)
T ss_dssp CHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHH
T ss_pred hHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHHH
Confidence 444444333 34455555533 4 78999999999998763
No 80
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.99 E-value=2.4 Score=43.95 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=18.8
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.+ ++..++||||||.+.
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 455677877 678899999999873
No 81
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=64.28 E-value=2 Score=49.73 Aligned_cols=48 Identities=29% Similarity=0.471 Sum_probs=27.9
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|+||..... ..+...+. .+..++.. .|....+|-||++|+|||+.+.
T Consensus 101 ~~tfd~fv~g-~~n~~a~~-~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 101 DYTFENFVVG-PGNSFAYH-AALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TCSGGGCCCC-TTTHHHHH-HHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCChhhcCCC-CchHHHHH-HHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 5788875522 22333332 22233332 2213468899999999999875
No 82
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=64.02 E-value=3 Score=45.82 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=30.2
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCe--EEEEeccCCCCCceeec
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVNGAMQGING--TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~--tIfAYGQTGSGKTyTM~ 170 (1150)
+.||.+++. +.+... ...++..+..|... .|+-||++|+|||+...
T Consensus 41 ~~~~~ivG~----~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 41 QASQGMVGQ----LAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp SEETTEESC----HHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred cchhhccCh----HHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 567777763 333332 23445555566653 88999999999998763
No 83
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=63.89 E-value=1.6 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=18.6
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.| ++..++||||||.+.
T Consensus 61 i~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 61 IIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445667876 678999999999773
No 84
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=62.97 E-value=28 Score=31.74 Aligned_cols=69 Identities=9% Similarity=0.231 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q 001118 659 DQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVE 728 (1150)
Q Consensus 659 d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~ 728 (1150)
..|+-|++-++-.++.......=|+.-.+++..||++-. +.=++.=..+++..+..|+-|.+.|++.+.
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevN-K~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVN-KSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999987 445667778888888888888888887765
No 85
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=62.53 E-value=2.1 Score=45.45 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=19.0
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
++..++.|.| +++.++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 3455667866 678899999999763
No 86
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=62.27 E-value=2.9 Score=43.07 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=18.1
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.+ ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 445667876 567789999999864
No 87
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=61.36 E-value=3.1 Score=48.18 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.5
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+++..++..-.+.|.-.|+||||||.||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 35555555556788999999999999984
No 88
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=61.02 E-value=1.7 Score=47.61 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=30.3
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHH-HhhcCC---CeEEEEeccCCCCCceee
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVN-GAMQGI---NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~-~vL~Gy---N~tIfAYGQTGSGKTyTM 169 (1150)
..||.|.+....-+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 56787777544444444444444322 122232 346999999999999875
No 89
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=60.37 E-value=2.6 Score=41.42 Aligned_cols=18 Identities=22% Similarity=0.654 Sum_probs=15.1
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..++-||++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 456779999999999874
No 90
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=60.19 E-value=1.6 Score=43.66 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=17.3
Q ss_pred HhhcCCCeEEEEeccCCCCCceeec
Q 001118 146 GAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 146 ~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+++|.+ ++.+++||+|||++..
T Consensus 44 ~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 44 PALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHhcCCC--EEEEcCCCCCHHHHHH
Confidence 3456655 5678999999999764
No 91
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=60.14 E-value=3.3 Score=42.02 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=18.1
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..+++|.| ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 445667876 567789999999764
No 92
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=60.12 E-value=2.9 Score=45.87 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHHHhhcC-CCeEEEEeccCCCCCceeec
Q 001118 132 TRHVYDVAAQHVVNGAMQG-INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 132 QeeVYe~vv~plV~~vL~G-yN~tIfAYGQTGSGKTyTM~ 170 (1150)
++...+.+. ..+..++.| ...+|+-||++|+|||+++.
T Consensus 25 r~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 25 REDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHHH
T ss_pred hHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 444444433 334444444 45589999999999998763
No 93
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=59.37 E-value=3.4 Score=42.27 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=18.1
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.|+ +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 3455678765 67789999999874
No 94
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.18 E-value=48 Score=39.07 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhH
Q 001118 1005 ELRKRIDEAKRHEEDLENELANM 1027 (1150)
Q Consensus 1005 e~~~~~~e~k~~e~~len~lanm 1027 (1150)
++++++++.|++-..|..|++++
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHH
Confidence 34444444444444444444443
No 95
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=59.18 E-value=28 Score=32.87 Aligned_cols=70 Identities=9% Similarity=0.225 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q 001118 658 TDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVE 728 (1150)
Q Consensus 658 ~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~ 728 (1150)
...|.-|++-++-.++.......-|+.-.+++..||++-. +.=++.=..+++..+..|+-|.++|++.+.
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevN-k~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVN-KSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457889999999999999999999999999999999987 445677778888888888888888888765
No 96
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=59.01 E-value=3.4 Score=46.81 Aligned_cols=28 Identities=32% Similarity=0.378 Sum_probs=21.3
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
++..++.--.+.|.-.|+||||||.+|.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 4445555555688899999999999984
No 97
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=58.92 E-value=2 Score=48.05 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=30.7
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHH-HhhcCC---CeEEEEeccCCCCCceee
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVN-GAMQGI---NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~-~vL~Gy---N~tIfAYGQTGSGKTyTM 169 (1150)
.+||.|.+....-..+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 56888877555444455444444322 233332 235888999999999875
No 98
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=58.73 E-value=19 Score=32.41 Aligned_cols=64 Identities=27% Similarity=0.290 Sum_probs=46.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhh
Q 001118 698 LREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISE 777 (1150)
Q Consensus 698 i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e 777 (1150)
+...|+.++.+=++.+.+++.||++|.+|-..... +.-|+|. +.|+|--|+.|
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~----------------------~~~Elk~-----~~e~Ld~KI~e 57 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDA----------------------FRSNLKT-----LLEILDGKIFE 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHH-----HHHHHhhHHHH
Confidence 34568899999999999999999999887654221 2234443 56788888888
Q ss_pred hHHHHHHHHHH
Q 001118 778 NTEMQETILLL 788 (1150)
Q Consensus 778 ~~elqe~v~~l 788 (1150)
..+|...++.|
T Consensus 58 L~elrq~LakL 68 (72)
T 3cve_A 58 LTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88776665554
No 99
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=58.47 E-value=3.6 Score=42.89 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=17.7
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 344567876 566789999999764
No 100
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=58.45 E-value=7.2 Score=35.78 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 001118 871 AEIENLKQERVKLVEERDG 889 (1150)
Q Consensus 871 ~eie~lk~~~~~l~e~k~~ 889 (1150)
-||++||.+...|.+++..
T Consensus 27 mEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666665555555544
No 101
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.14 E-value=2.2 Score=46.38 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=17.1
Q ss_pred CCCeEEEEeccCCCCCceeec
Q 001118 150 GINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+....|+-||++|+|||+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 345678999999999998763
No 102
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=57.84 E-value=3.4 Score=45.03 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=20.2
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+..++.|....++++++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 345667774455788999999999873
No 103
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=57.26 E-value=4.2 Score=44.82 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.0
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.+ ++..++||||||.+.
T Consensus 71 i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 71 ILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred hHHHhCCCC--EEEECCCCCcccHHH
Confidence 455667877 678999999999874
No 104
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=56.58 E-value=3.8 Score=42.60 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=17.5
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.|+ +..++||||||.+.
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 3445678764 56679999999874
No 105
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=56.43 E-value=2.1 Score=46.23 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=27.5
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHH-HhhcCCC----eEEEEeccCCCCCceee
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVN-GAMQGIN----GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~-~vL~GyN----~tIfAYGQTGSGKTyTM 169 (1150)
.+||.|-+.+..-+.+.+.+..|+-. .++.+++ ..|+-||++|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 56777766555555555555444432 2333332 23899999999999875
No 106
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=56.08 E-value=6.2 Score=37.99 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.5
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
+..|+-||.+|+|||+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SSCEEEEEETTCCHHHHHG
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 4457889999999998764
No 107
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=55.93 E-value=2.1 Score=49.51 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=29.3
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHH-HhhcC---CCeEEEEeccCCCCCceeec
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVN-GAMQG---INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~-~vL~G---yN~tIfAYGQTGSGKTyTM~ 170 (1150)
..||.|.+....-..+.+.+..|+-. .++.| ....|+-||++|+|||+...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 56788776443333333333333221 22333 23568899999999998763
No 108
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=55.84 E-value=3.7 Score=42.73 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=18.0
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
++..+..|- .++..|+||||||..+
T Consensus 69 ~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 69 ILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 344555664 4678899999999755
No 109
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=55.62 E-value=4.3 Score=41.82 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=17.3
Q ss_pred HHhhcCCCeEEEEeccCCCCCceee
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
..++.|.| ++..++||||||.+.
T Consensus 56 ~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 56 PLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhCCCC--EEEECCCCCcHHHHH
Confidence 34567876 566789999999873
No 110
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=55.51 E-value=5.7 Score=45.86 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=30.4
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHHhhcCCC--eEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNGAMQGIN--GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN--~tIfAYGQTGSGKTyTM 169 (1150)
.|.||.+.+ |+.+.+.+ ..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 356777775 44554432 245555656653 36888999999999875
No 111
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=55.00 E-value=5.3 Score=39.69 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.4
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..++-||++|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999998763
No 112
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=54.39 E-value=4.7 Score=42.47 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=17.6
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.+ ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 344567766 566789999999864
No 113
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=54.11 E-value=3.1 Score=48.97 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.6
Q ss_pred CCCeEEEEeccCCCCCceee
Q 001118 150 GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM 169 (1150)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567999999999999865
No 114
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=54.04 E-value=5.7 Score=43.55 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCC---CeEEEEeccCCCCCceeec
Q 001118 140 AQHVVNGAMQGI---NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 140 v~plV~~vL~Gy---N~tIfAYGQTGSGKTyTM~ 170 (1150)
+...+..++.|. --||+-||+.|+|||+...
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 344567788887 3479999999999998754
No 115
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=53.75 E-value=45 Score=32.23 Aligned_cols=70 Identities=9% Similarity=0.252 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccC
Q 001118 660 QMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERT 730 (1150)
Q Consensus 660 ~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s 730 (1150)
.|.-|++-++-.++.......-|+.-.+++..||++-. +.=++.=..+++..+..|+-|.|+|++.+.+.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevN-K~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~ 92 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELN-KRTLTDREGVAVSIQAKIDELKRQLADRIATG 92 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47788888998999899999999999999999999987 45577778889999999999999998887753
No 116
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=53.44 E-value=5 Score=42.54 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.9
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
...|+-||++|+|||++..
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4578899999999998763
No 117
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=53.11 E-value=79 Score=28.83 Aligned_cols=58 Identities=29% Similarity=0.310 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 413 LIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKAALLGRIQRLTKLI 488 (1150)
Q Consensus 413 li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~Lee~ee~~~~L~~~i~~L~k~i 488 (1150)
+-++++..+..-..||+.|++ -..+|..+..+|...+.+++++.+.+...|.-|+.-.
T Consensus 12 LRrrl~E~~~q~qaEl~sLrr------------------T~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKR------------------TEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH------------------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777654 2345556666666667777777777776666665443
No 118
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=52.67 E-value=3.3 Score=42.25 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=17.6
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..+++|.| ++..++||||||.+.
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345567766 467789999999863
No 119
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=51.87 E-value=4.9 Score=43.27 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=16.7
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
-...|.-.|+||||||+++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34677889999999999884
No 120
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=51.76 E-value=6.2 Score=42.07 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=17.3
Q ss_pred cCCCeEEEEeccCCCCCceeec
Q 001118 149 QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|....++-||++|+|||++..
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4544458999999999998764
No 121
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.76 E-value=2.8e+02 Score=40.25 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=17.3
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+++.++.. +--|+-+|+||||||.++
T Consensus 1296 ll~~ll~~-~~pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1296 VLHAWLSE-HRPLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp HHHHHHHT-TCCCEEESSTTSSHHHHH
T ss_pred HHHHHHHC-CCcEEEECCCCCCHHHHH
Confidence 44444433 234577899999999665
No 122
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.71 E-value=5.6 Score=43.63 Aligned_cols=42 Identities=29% Similarity=0.413 Sum_probs=25.6
Q ss_pred eeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 121 GFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 121 ~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|+.+++ |..+.+. +-..+-.|--..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~----L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITT----VRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHH----HHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3565664 4444432 2233334532237889999999999875
No 123
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=51.37 E-value=5.1 Score=44.00 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=20.1
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345566775566788899999999874
No 124
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=50.95 E-value=5.1 Score=44.33 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=18.3
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.+ ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 344567877 677889999999764
No 125
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=50.65 E-value=5 Score=43.61 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=19.3
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|-...++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 45566774455788899999999864
No 126
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=50.08 E-value=5 Score=42.83 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.3
Q ss_pred eEEEEeccCCCCCceee
Q 001118 153 GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM 169 (1150)
..|+-||++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 67999999999999876
No 127
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=50.07 E-value=11 Score=41.03 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcCC-----CeEEEEeccCCCCCceee
Q 001118 139 AAQHVVNGAMQGI-----NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 139 vv~plV~~vL~Gy-----N~tIfAYGQTGSGKTyTM 169 (1150)
+...++..++.|+ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4445555555543 356888999999999764
No 128
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.86 E-value=4.7 Score=43.63 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=19.5
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+...+..|....++-||++|+|||+++.
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 3334445533348899999999998874
No 129
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=49.06 E-value=7 Score=44.68 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=20.8
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCcee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyT 168 (1150)
.+..++.|.+..++..|+||||||.+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 34556777667889999999999977
No 130
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=48.70 E-value=9.9 Score=44.15 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=26.8
Q ss_pred eeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 121 GFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 121 ~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.||.|++. +.... .++..+-.+....++-||++|+|||+...
T Consensus 178 ~ld~iiGr----~~~i~----~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIGR----SKEIQ----RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCCC----HHHHH----HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----HHHHH----HHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 45666653 33333 34444444556677889999999998874
No 131
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=48.62 E-value=2.8e+02 Score=40.29 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=15.4
Q ss_pred CCCeEEEEeccCCCCCcee
Q 001118 150 GINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyT 168 (1150)
...-+||..|+||||||.+
T Consensus 904 ~vRhGvmlVGp~gsGKTt~ 922 (3245)
T 3vkg_A 904 NINHGVMMVGPSGGGKTTS 922 (3245)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred HheeeEEEECCCCCCHHHH
Confidence 3556689999999999965
No 132
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=48.24 E-value=6.1 Score=42.00 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=17.6
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..+++|.+ ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 344567765 566789999999765
No 133
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=48.18 E-value=4.9 Score=38.75 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=16.3
Q ss_pred CCCeEEEEeccCCCCCceee
Q 001118 150 GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM 169 (1150)
..+..|+-||.+|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45566899999999998765
No 134
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=47.94 E-value=6.4 Score=43.32 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=17.9
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 344567766 677889999999764
No 135
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=47.88 E-value=9.3 Score=40.97 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=16.4
Q ss_pred CCCeEEEEeccCCCCCceee
Q 001118 150 GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM 169 (1150)
+....|+-||++|+|||+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 34567888999999999775
No 136
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=47.74 E-value=56 Score=33.16 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=24.9
Q ss_pred hhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001118 757 LEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDS 794 (1150)
Q Consensus 757 leik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 794 (1150)
|+.|..++-+||+-+..=.-+...+++++..|++.=..
T Consensus 91 l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 91 IALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777766666666666666666665433
No 137
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=47.71 E-value=4.6 Score=42.98 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=20.1
Q ss_pred HHHhhcCCC--eEEEEeccCCCCCceeec
Q 001118 144 VNGAMQGIN--GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 144 V~~vL~GyN--~tIfAYGQTGSGKTyTM~ 170 (1150)
+..++.|.- -+|+-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 444555632 469999999999998865
No 138
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=47.62 E-value=7.2 Score=46.07 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=19.4
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++..+..|...++++ ++||||||++++
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3444445576655554 999999999975
No 139
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=47.20 E-value=5.9 Score=42.07 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=17.5
Q ss_pred hcCCCeEEEEeccCCCCCceeec
Q 001118 148 MQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 148 L~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.|....++-||++|+|||++..
T Consensus 34 ~~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 34 ERKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTTCCCCEEEESSSSSSHHHHHH
T ss_pred hCCCCCeEEEECcCCcCHHHHHH
Confidence 34544448999999999998764
No 140
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=47.11 E-value=7.3 Score=43.06 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=19.8
Q ss_pred HHhhcC---CCeEEEE--eccCCCCCceeec
Q 001118 145 NGAMQG---INGTVFA--YGVTSSGKTHTMH 170 (1150)
Q Consensus 145 ~~vL~G---yN~tIfA--YGQTGSGKTyTM~ 170 (1150)
..+..| -...++- ||+.|+|||+.+.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 455555 4567888 9999999998763
No 141
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=46.87 E-value=6.4 Score=41.38 Aligned_cols=24 Identities=25% Similarity=0.073 Sum_probs=17.6
Q ss_pred HHhhcCCCeEEEEeccCCCCCceeec
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
..++.+.+ ++.+|+||+|||++..
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 34556655 6677899999999854
No 142
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=45.86 E-value=7 Score=43.18 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=17.5
Q ss_pred HHhhcCCCeEEEEeccCCCCCceee
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
..++.|.| ++..++||||||.+.
T Consensus 47 ~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 47 PIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHccCCC--EEEEcCCCCHHHHHH
Confidence 44567877 467889999999764
No 143
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=45.77 E-value=56 Score=29.23 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=22.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 001118 697 QLREHMQKLKDEISEKKLQIRVLEQRMI 724 (1150)
Q Consensus 697 ~i~~~~~~l~~ei~~k~~q~~~le~~i~ 724 (1150)
-+...+..|+.|.++|-++|+.|+-.|.
T Consensus 15 ~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 15 ALLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344688999999999999999987653
No 144
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=45.49 E-value=4.6 Score=43.91 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=21.9
Q ss_pred cchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 131 TTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 131 tQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|+++...+ ...+..| ..|+-||++|+|||+.+.
T Consensus 31 g~~~~~~~l----~~~l~~~--~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 31 GQKYMINRL----LIGICTG--GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp SCHHHHHHH----HHHHHHT--CCEEEESCCCHHHHHHHH
T ss_pred CcHHHHHHH----HHHHHcC--CeEEEECCCCCcHHHHHH
Confidence 355554433 3333444 357889999999998764
No 145
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=45.15 E-value=23 Score=32.34 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=44.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhh
Q 001118 699 REHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISEN 778 (1150)
Q Consensus 699 ~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~ 778 (1150)
...|+.++.+=++.+.+++.||++|.+|-..... +.-|||. +.++|--|+.|.
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~----------------------~~~Elk~-----l~e~Ld~KI~eL 64 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERER----------------------ARAEVGR-----AAQLLDVSLFEL 64 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHH-----HHHHHhhHHHHH
Confidence 3568889999999999999999999887654221 2234432 567778888887
Q ss_pred HHHHHHHHHH
Q 001118 779 TEMQETILLL 788 (1150)
Q Consensus 779 ~elqe~v~~l 788 (1150)
.+|...++.|
T Consensus 65 ~elRqgLakL 74 (79)
T 3cvf_A 65 SELREGLARL 74 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7776655554
No 146
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=45.04 E-value=17 Score=30.65 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=25.9
Q ss_pred HHHHhhHHHHHHhhhhhhhhhhHHHHHHhhh
Q 001118 913 VELRNLAEEVTRLSYENAKLNSELAAAKEAL 943 (1150)
Q Consensus 913 vElk~laeevtkl~~qN~kl~~el~~~~~~~ 943 (1150)
.-+..|..++..|+.+|+||+.-|..+|..-
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455888999999999999999999888653
No 147
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=45.00 E-value=2.4e+02 Score=28.13 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHH-----hcCCcchHHHHHHHHhHHHHHHHHHH
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQA-----ASNSEDSQLREHMQKLKDEISEKKLQ 715 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A-----~~~p~~~~i~~~~~~l~~ei~~k~~q 715 (1150)
....+..|..+.+.+..|+..+...+..+...+ ..+|.-..|+..+..|++.-.....-
T Consensus 31 dl~~v~~ll~kh~~~~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~i~~~~~~l~~~w~~L~~~ 94 (213)
T 1cun_A 31 DLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQL 94 (213)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999998888776655 35677777777777666554444433
No 148
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=44.57 E-value=1.8e+02 Score=28.32 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 409 DEKSLIKKYQKEITFLKQELQQLK 432 (1150)
Q Consensus 409 d~~~li~~lqkEI~~Lk~EL~~lk 432 (1150)
+.+.+|..|+.+|..|+.+|+.++
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMK 35 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999875
No 149
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=43.92 E-value=8.7 Score=45.54 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=16.6
Q ss_pred hcCCCeEEEEeccCCCCCceeec
Q 001118 148 MQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 148 L~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.|.+ |+-.|+||||||+||.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 35665 6678999999999874
No 150
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=43.82 E-value=11 Score=40.75 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=26.9
Q ss_pred eeeeeeCCCCcchhHHHHHHHHHHHHhh--cCCCeEEEEeccCCCCCceee
Q 001118 121 GFDKVFGPATTTRHVYDVAAQHVVNGAM--QGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 121 ~FD~VF~~~atQeeVYe~vv~plV~~vL--~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+||.+.+ ++.+...+ ..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4565554 44444432 23444333 234467899999999999865
No 151
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=43.77 E-value=1.4e+02 Score=27.87 Aligned_cols=79 Identities=14% Similarity=0.240 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001118 412 SLIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKAALLGRIQRLTKLILV 490 (1150)
Q Consensus 412 ~li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~Lee~ee~~~~L~~~i~~L~k~il~ 490 (1150)
.++.+|++.+...+..++.+++.+............++...-..+-+.-+.|-.++.+..++...+.++.-.+.+.++.
T Consensus 12 ~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~~~ 90 (93)
T 3t98_B 12 VLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLG 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566677777777777777665543321112233455655444444455677778888888888887777777777654
No 152
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=43.10 E-value=69 Score=30.89 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=28.2
Q ss_pred HHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001118 743 LSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQI 792 (1150)
Q Consensus 743 ~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql 792 (1150)
|..|..||. ..++.|..|..+|.+|.+++..++..|
T Consensus 26 i~~L~~~L~--------------~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 26 LEDLRQQLQ--------------QAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777766 357888999999999999888877654
No 153
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=43.00 E-value=12 Score=40.51 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=15.8
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 4568889999999999874
No 154
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=42.25 E-value=11 Score=41.62 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=14.6
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..++-||++|+|||+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 346779999999998863
No 155
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.97 E-value=21 Score=33.91 Aligned_cols=69 Identities=26% Similarity=0.284 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhh----------hHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhh
Q 001118 865 QVLMQAAEIENLKQERVKLVEERDGLEIHSQKLAEEAS----------YAKELASSAAVELRNLAEEVTRLSYENAKLNS 934 (1150)
Q Consensus 865 ~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~s----------yaK~LAsaaavElk~laeevtkl~~qN~kl~~ 934 (1150)
++..-..+|+.|..+..+|.++|+.||.+--+..=-.- |..-.|+.|-... .++|.||..++++|-.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~---~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRL---REDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 33445678999999999999999999987654221112 3455677775554 4899999999999854
Q ss_pred HH
Q 001118 935 EL 936 (1150)
Q Consensus 935 el 936 (1150)
-+
T Consensus 90 ~v 91 (100)
T 1go4_E 90 LL 91 (100)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 156
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=41.60 E-value=6.3 Score=44.64 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=16.9
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
....|.-.|+||||||++|.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678889999999999984
No 157
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=41.58 E-value=9 Score=46.22 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=18.3
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|..++..-.. .+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 34455543333 4567999999999974
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.40 E-value=7 Score=42.58 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=14.3
Q ss_pred EEEeccCCCCCceeec
Q 001118 155 VFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM~ 170 (1150)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999874
No 159
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=41.36 E-value=59 Score=31.66 Aligned_cols=27 Identities=37% Similarity=0.493 Sum_probs=20.0
Q ss_pred HHHhhHHHHHHhhhhhhhhhhHHHHHH
Q 001118 914 ELRNLAEEVTRLSYENAKLNSELAAAK 940 (1150)
Q Consensus 914 Elk~laeevtkl~~qN~kl~~el~~~~ 940 (1150)
+|++.++||.+|..+|.-|...++..+
T Consensus 86 ~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 86 KLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 678888999999999988877666554
No 160
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.35 E-value=1.6e+02 Score=30.02 Aligned_cols=97 Identities=20% Similarity=0.325 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccc
Q 001118 658 TDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTT 737 (1150)
Q Consensus 658 ~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~ 737 (1150)
+.+...++++++.|..+++. +..++++|.+++.+-+.+-...|+ .+.
T Consensus 36 i~~lE~~r~~~~~l~~~~~~--------------------~~~e~~~L~~~l~~E~~~R~~aE~-------------~~~ 82 (154)
T 2ocy_A 36 IENYNQLKEDYNTLKRELSD--------------------RDDEVKRLREDIAKENELRTKAEE-------------EAD 82 (154)
T ss_dssp HHTTHHHHHHHHHHHTHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHT-------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHhh--------------------hhHHHHHHHHHHHHHHHHHHHHHH-------------HHH
Q ss_pred hhhhHHHHHHHhhcccc-----------hhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001118 738 EMSQALSKLTTQLNEKT-----------FELEIKSADNRILQEQLQMKISENTEMQETILLLRQ 790 (1150)
Q Consensus 738 e~~q~~~~l~~qlnek~-----------feleik~adnrilqeql~~k~~e~~elqe~v~~l~q 790 (1150)
.+.+-+..||+.|=|-+ -.+|+| |+.|++||..|-.-...||+.+..||.
T Consensus 83 ~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r---~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 83 KLNKEVEDLTASLFDEANNMVADARKEKYAIEIL---NKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 161
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=41.31 E-value=9 Score=41.79 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+..++.|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455677866 566789999999764
No 162
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=41.17 E-value=5.3 Score=47.05 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=28.2
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHH-HhhcC----CCeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVN-GAMQG----INGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~-~vL~G----yN~tIfAYGQTGSGKTyTM 169 (1150)
.++||.|.+.+..-.++.+.+ ..+-. ..+.+ ....|+-||++|+|||+.+
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 467888877554433333321 11100 11222 2345999999999999875
No 163
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=41.10 E-value=7.5 Score=45.18 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=20.0
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+...+-.|.-..|+-||++|+|||+..
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 333344555568999999999999875
No 164
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=40.85 E-value=11 Score=43.97 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=20.4
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+|..++.|-+..+++.++||||||.+.
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHHH
Confidence 345566665667889999999999863
No 165
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=40.79 E-value=14 Score=40.19 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=16.4
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
....++-||+.|+|||+++.
T Consensus 37 ~~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34578999999999998763
No 166
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=40.39 E-value=9.9 Score=42.41 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=18.2
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCcee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyT 168 (1150)
++..++.|.| ++..++||||||.+
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3445667865 57889999999984
No 167
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=40.12 E-value=6.7 Score=41.79 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=15.4
Q ss_pred hhcCCCeEEEEeccCCCCCceeec
Q 001118 147 AMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 147 vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
++.|.++ +..++||||||.+..
T Consensus 125 ~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 125 GLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHhcCCe--EEEcCCCCCcHHHHH
Confidence 4445444 338999999998764
No 168
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=40.10 E-value=9.6 Score=38.86 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=21.5
Q ss_pred HHHHHhhcC-C--CeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQG-I--NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~G-y--N~tIfAYGQTGSGKTyTM~ 170 (1150)
+-++.++.| + ...+.-+|++|+|||+.+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 456777754 2 3567789999999998864
No 169
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=39.90 E-value=9.6 Score=44.44 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=23.3
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 128 PATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 128 ~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..-|..++. .++.|.+..++..++||||||++.
T Consensus 142 p~~~Q~~ai~--------~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 142 XXKIQEKALP--------LLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp CCCTTSSSHH--------HHHCSSCCCEEEECCSSTTSHHHH
T ss_pred cHHHHHHHHH--------HHHcCCCCCEEEECCCCccHHHHH
Confidence 4445655553 455664456788899999999873
No 170
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=39.64 E-value=4.4 Score=47.99 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=28.0
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHH-HhhcCC----CeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVN-GAMQGI----NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~-~vL~Gy----N~tIfAYGQTGSGKTyTM 169 (1150)
.++||.|.+.+..-..+.+. +..+-. ..+..+ ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 46788887654433333322 111111 122222 234899999999999876
No 171
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.87 E-value=10 Score=40.24 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=16.6
Q ss_pred cCCCeEEEEeccCCCCCceeec
Q 001118 149 QGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 149 ~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.|.-..++-||+.|+|||+...
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4433338899999999998764
No 172
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=38.83 E-value=14 Score=39.04 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHhhcCC-CeEEEEeccCCCCCceee
Q 001118 134 HVYDVAAQHVVNGAMQGI-NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 134 eVYe~vv~plV~~vL~Gy-N~tIfAYGQTGSGKTyTM 169 (1150)
.+|+.+...++.....+. ...|+-.|++|||||+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 344444444443333222 246888999999999753
No 173
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=38.75 E-value=10 Score=40.76 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=17.4
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 344556632 4567899999999874
No 174
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.61 E-value=51 Score=32.76 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhh
Q 001118 864 SQVLMQAAEIENLKQERVKLVEERDGLEIHSQKLA 898 (1150)
Q Consensus 864 ~~~~~q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ 898 (1150)
.++..-..++++++++..+|.+++..|+-++.||-
T Consensus 96 ~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 96 HELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456777777777777777777777777773
No 175
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.48 E-value=31 Score=29.85 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHH
Q 001118 869 QAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKEL 907 (1150)
Q Consensus 869 q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~L 907 (1150)
...+++.|.+++.+|..+|+.|+.+...|-.|-.|=|+|
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999887776
No 176
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=38.42 E-value=7.8 Score=48.41 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=27.1
Q ss_pred eeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 121 GFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 121 ~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.||.|++. ++. +..++..+..+....++-||++|+|||+.+.
T Consensus 168 ~ld~viGr----~~~----i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 168 KLDPVIGR----DEE----IRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCCCCSC----HHH----HHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcccCCc----HHH----HHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 45666553 333 3344444445555567889999999999875
No 177
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=37.82 E-value=12 Score=43.04 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=18.1
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
|..++.|.| ++..++||||||.+.
T Consensus 16 i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 16 AQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Confidence 445567876 567789999999874
No 178
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=37.58 E-value=3.8e+02 Score=28.05 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=48.7
Q ss_pred HHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCCcccccccCCccccccccccccHHHHHHHHHHHHHHHHHHH
Q 001118 914 ELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSAPYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLE 993 (1150)
Q Consensus 914 Elk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e 993 (1150)
.+-.|-.|++.|...|..|..-+--.--.. + +--|.........+|+..-++...+|-|-||
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~N---------D---------dlEr~~R~~~~SleD~e~kln~aiEr~alLE 150 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQAN---------D---------DLERAKRATIMSLEDFEQRLNQAIERNAFLE 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------h---------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777765442221110 0 0000001123346789999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhh
Q 001118 994 AALSEREQVEGELRKRIDEAK 1014 (1150)
Q Consensus 994 ~~l~ek~~~e~e~~~~~~e~k 1014 (1150)
.=|-||+++..+.||=-+|.+
T Consensus 151 ~El~EKe~l~~~~QRLkdE~r 171 (189)
T 2v71_A 151 SELDEKESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHHHHHHHHHCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888775
No 179
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.51 E-value=28 Score=36.47 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001118 763 DNRILQEQLQMKISENTEMQETILLLRQQI 792 (1150)
Q Consensus 763 dnrilqeql~~k~~e~~elqe~v~~l~qql 792 (1150)
-|++|-+||..|..|+.-||+++++|++|.
T Consensus 28 En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 28 ENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 478999999999999999999999999997
No 180
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=36.89 E-value=7.7 Score=42.32 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=18.0
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445567766 567799999999874
No 181
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=36.81 E-value=11 Score=41.93 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.5
Q ss_pred CeEEEEeccCCCCCceee
Q 001118 152 NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM 169 (1150)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999875
No 182
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=36.65 E-value=12 Score=37.57 Aligned_cols=29 Identities=24% Similarity=0.151 Sum_probs=20.2
Q ss_pred HHHHHhhc-CC--CeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQ-GI--NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~-Gy--N~tIfAYGQTGSGKTyTM~ 170 (1150)
+.++.++. |+ ...+.-+|++|||||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 34566665 43 2456678999999998764
No 183
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.50 E-value=57 Score=31.55 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHHhhhcccccccCCC
Q 001118 874 ENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAAKEALSRSNFCQRSA 953 (1150)
Q Consensus 874 e~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~~~~~~r~~~~~~~~ 953 (1150)
-+|+.++.+|.=+.+.+....+...-| +....-.|-.|+++|...|..|..-+--.--.. +
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e----------~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N---------D 66 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQ----------SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN---------D 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------h
Confidence 344444455544444444433332222 334566788999999999999876543221110 0
Q ss_pred cccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001118 954 PYEFKQSNSNGARRKTEDGLLVEELQKELSSRYQREADLEAALSEREQVEGEL 1006 (1150)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~ 1006 (1150)
+=-|........++|+-.=++...+|-+-||.=|.||+.++.++
T Consensus 67 ---------DLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L~~~~ 110 (111)
T 2v66_B 67 ---------DLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSV 110 (111)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00011112244577999999999999999999999999988754
No 184
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=36.03 E-value=11 Score=45.47 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.3
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3578899999999999874
No 185
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=35.92 E-value=71 Score=30.59 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=45.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHH
Q 001118 701 HMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTE 780 (1150)
Q Consensus 701 ~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~e 780 (1150)
.|+.|.+||+.-..|+-+==|++.+.-.+-....| -|=+--|++...+..-
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPD-----------------------------evNK~tl~~R~~~Vsa 86 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEVDPD-----------------------------DVNKSTLQNRRAAVST 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----------------------------HHHHHHHHHHHHHHHH
Confidence 47778888877777776666666554332111111 1123346778889999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 001118 781 MQETILLLRQQIDSLSN 797 (1150)
Q Consensus 781 lqe~v~~l~qql~~~~~ 797 (1150)
||.+|+.||+||+++..
T Consensus 87 lq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 87 LETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 186
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=35.79 E-value=13 Score=42.42 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=17.8
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
|..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 345567876 466789999999774
No 187
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=35.78 E-value=1.4e+02 Score=29.95 Aligned_cols=63 Identities=27% Similarity=0.407 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH----HHHHHH-hHHHHHHHHHHHh------------hhhhhhhhhhhhhHHHHHHHHh
Q 001118 973 LLVEELQKELSSRYQREADLEA----ALSERE-QVEGELRKRIDEA------------KRHEEDLENELANMWVLIAKMR 1035 (1150)
Q Consensus 973 ~~~~~~~~el~~~~~re~~~e~----~l~ek~-~~e~e~~~~~~e~------------k~~e~~len~lanmwvlvaklk 1035 (1150)
+..+++++=|.|.-+|-.++|| .|++|- +.++-+++.+|+. .+=|++=||-=|.|-.|..+||
T Consensus 43 ~SleEIqkKLeAAEERRks~Ea~~lk~laekrehe~EvlqKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~erLk 122 (143)
T 3ryc_E 43 PSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQ 122 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5578999999999999888887 455554 4455566667653 3446777899999999988887
No 188
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=35.36 E-value=1.5e+02 Score=34.58 Aligned_cols=132 Identities=9% Similarity=0.115 Sum_probs=94.1
Q ss_pred HHHHHHHHhhhhHhhhhchHHHHHHHH-----hcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccc
Q 001118 663 LLHEQMKMLAGEVALCTSSLKRLSEQA-----ASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTT 737 (1150)
Q Consensus 663 lLrEQ~KmL~gEva~~~s~Lkrl~e~A-----~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~ 737 (1150)
.|+.+.+.|..|+..+...+..+.+.+ .++|.-..|+..|..|+..-...++-..--++++.++...-..-.+.-
T Consensus 130 ~l~~khq~l~~EL~~~e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~Da~ 209 (450)
T 3r6n_A 130 QKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQ 209 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 357899999999999999998888764 579999999999999999988888888888999988877766666666
Q ss_pred hhhhHHHHHHHhhccc---chhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 001118 738 EMSQALSKLTTQLNEK---TFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLS 796 (1150)
Q Consensus 738 e~~q~~~~l~~qlnek---~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~ 796 (1150)
|+..-+.+....|+-+ .|--..-++ .-|.-+++.=-.+......+|..|.+|-....
T Consensus 210 EaesWL~eke~~l~s~y~~D~g~d~~~~--e~LLkkh~~le~~l~~~~~~I~~L~~qA~~l~ 269 (450)
T 3r6n_A 210 STEAYLKGLQDSIRKKYPCDKNMPLQHL--LEQIKELEKEREKILEYKRQVQNLVNKSKKIV 269 (450)
T ss_dssp HHHHHHHHHHHHHHHHSCCCTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcccccCcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666666666533 111111111 12334444445566777778888887754433
No 189
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=34.71 E-value=2.9e+02 Score=28.47 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhh----hHHHHHHhh
Q 001118 872 EIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLN----SELAAAKEA 942 (1150)
Q Consensus 872 eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~----~el~~~~~~ 942 (1150)
..+.=+-...+-+|.-..|+.+++-|-+|.-+-|.-=+.+-.|-+.|.|.|+-|-.+.+-+. =+|-++...
T Consensus 77 ~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 77 ILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334455566667889999999999999999999999999999999999999998888 557666543
No 190
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=34.62 E-value=13 Score=37.20 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred HHHHHhhc-CCC--eEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQ-GIN--GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~-GyN--~tIfAYGQTGSGKTyTM~ 170 (1150)
+-++.++. |+. ..+.-+|++|+|||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 45677775 553 467889999999998764
No 191
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=34.54 E-value=16 Score=39.90 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.6
Q ss_pred CCCeEEEEeccCCCCCceee
Q 001118 150 GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 150 GyN~tIfAYGQTGSGKTyTM 169 (1150)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678899999999999764
No 192
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=34.53 E-value=16 Score=41.44 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=18.1
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.+ +++.++||||||.+.
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 344567866 577889999999864
No 193
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=33.55 E-value=21 Score=36.18 Aligned_cols=29 Identities=24% Similarity=0.113 Sum_probs=18.9
Q ss_pred HHHHHHhhc--CCCeEEEEeccCCCCCceee
Q 001118 141 QHVVNGAMQ--GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 141 ~plV~~vL~--GyN~tIfAYGQTGSGKTyTM 169 (1150)
..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 344444442 33445667899999999866
No 194
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=33.32 E-value=16 Score=37.96 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=18.3
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+++++-.|-- +.-.|++|||||+.+
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 34555555644 444899999999876
No 195
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=33.30 E-value=20 Score=45.02 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=35.9
Q ss_pred EeeeeeeCCCCcchhHHHHHHHHHHH-HhhcCCC----eEEEEeccCCCCCceee
Q 001118 120 YGFDKVFGPATTTRHVYDVAAQHVVN-GAMQGIN----GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 120 F~FD~VF~~~atQeeVYe~vv~plV~-~vL~GyN----~tIfAYGQTGSGKTyTM 169 (1150)
.+||.|-|-+..-+.+.+.+.-|+.. .++.++. ..|+-||+.|+|||+..
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 56777777776666777666666653 3555554 46999999999999754
No 196
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=33.29 E-value=22 Score=42.77 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=18.5
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
|..++.|.+ +++.++||+|||.+.
T Consensus 53 i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 53 INVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHcCCC--EEEEECCCChHHHHH
Confidence 445677877 677889999999763
No 197
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=33.15 E-value=17 Score=42.88 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=19.8
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+|..++.|-+.-+++.++||||||.+.
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 344556555566788999999999863
No 198
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=33.10 E-value=1.3e+02 Score=28.37 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=51.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhh
Q 001118 697 QLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKIS 776 (1150)
Q Consensus 697 ~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~ 776 (1150)
.|+..|..|+.||..-.++...|++ |.+.....+...| ..-++.||..=..
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~K-m~~vY~~nP~~GD----------------------------~~s~~~~L~e~~~ 69 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKK-MKDVYEKTPQMGD----------------------------PASLEPQIAETLS 69 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH-HHHHHHHCGGGCC----------------------------GGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCccCC----------------------------HHHHHHHHHHHHH
Confidence 6788899999999999999999998 7777777675432 2222455556666
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 001118 777 ENTEMQETILLLRQQIDSL 795 (1150)
Q Consensus 777 e~~elqe~v~~l~qql~~~ 795 (1150)
.+.-|+..+..++..|..+
T Consensus 70 kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 70 NIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777788888888877765
No 199
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=33.04 E-value=14 Score=41.98 Aligned_cols=23 Identities=26% Similarity=0.095 Sum_probs=17.1
Q ss_pred HHhhcCCCeEEEEeccCCCCCceee
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
..++.|.+ ++..|+||+|||++.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 44556644 667799999999985
No 200
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=32.96 E-value=3.9e+02 Score=28.30 Aligned_cols=140 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHh-----cCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcc
Q 001118 658 TDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAA-----SNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPH 732 (1150)
Q Consensus 658 ~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~-----~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~ 732 (1150)
...+..|.++.+.|..|++-+...++.|...|. ..++-..|+..+..|++.-.....-+..=-+++-.+...-.-
T Consensus 35 l~~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~l~~f 114 (322)
T 1u4q_A 35 LASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQF 114 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccchhhhHHHHHHHhhcc-----------------cchhhhhccchhhH--------------------HHHHHHHhh
Q 001118 733 TLSTTEMSQALSKLTTQLNE-----------------KTFELEIKSADNRI--------------------LQEQLQMKI 775 (1150)
Q Consensus 733 ~~~~~e~~q~~~~l~~qlne-----------------k~feleik~adnri--------------------lqeql~~k~ 775 (1150)
..+..++..-+.+....++. +.|+-||.+...+| |+++|+.=.
T Consensus 115 ~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~~h~~l~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~l~~L~ 194 (322)
T 1u4q_A 115 FRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFV 194 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh
Q 001118 776 SENTEMQETILLLRQQIDSLSN 797 (1150)
Q Consensus 776 ~e~~elqe~v~~l~qql~~~~~ 797 (1150)
.....|.+.+..-++.|.+++.
T Consensus 195 ~~w~~L~~~~~~R~~~L~~~~~ 216 (322)
T 1u4q_A 195 DHWKELKQLAAARGQRLEESLE 216 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 201
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=32.89 E-value=19 Score=41.53 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=24.8
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 129 ATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 129 ~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
+..|..++..+. ..+..| ...++..|..|||||+++.
T Consensus 27 n~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHHH
Confidence 446777765443 222233 3488999999999998774
No 202
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.32 E-value=32 Score=30.92 Aligned_cols=48 Identities=25% Similarity=0.132 Sum_probs=37.1
Q ss_pred hHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHH
Q 001118 741 QALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLL 788 (1150)
Q Consensus 741 q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l 788 (1150)
-+|-+|-..|.+|.=||--|.+=-+.|+.+|++|-.++.+||..+..+
T Consensus 19 gti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 19 GSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347777777777777777777778888888888888888888776655
No 203
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=32.19 E-value=16 Score=36.73 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=20.6
Q ss_pred HHHHHhhc-CC--CeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQ-GI--NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~-Gy--N~tIfAYGQTGSGKTyTM~ 170 (1150)
+-++.++. |+ ...+.-+|++|||||..+.
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHH
Confidence 45666674 43 3457779999999998763
No 204
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=31.94 E-value=15 Score=43.88 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=18.8
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
|..++.|.+ ++..++||+|||.+..
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~~~ 40 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRVAV 40 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHHHH
Confidence 445566776 5778999999998753
No 205
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=31.93 E-value=3.2e+02 Score=27.39 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhc-----CCcchHHHHHHHHhHHHHHH
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAAS-----NSEDSQLREHMQKLKDEISE 711 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~-----~p~~~~i~~~~~~l~~ei~~ 711 (1150)
....+..|..+.+.|..|+.-+...++.|...|.. .++-..|+..+..|++--..
T Consensus 34 dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~ 93 (216)
T 1u5p_A 34 DLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQR 93 (216)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999888876642 44556677666666554333
No 206
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=31.89 E-value=14 Score=40.64 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=18.3
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+..++.| .++..++||+|||.++.
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 34556777 44567899999998764
No 207
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=31.81 E-value=10 Score=41.96 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.2
Q ss_pred CeEEEEeccCCCCCceee
Q 001118 152 NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM 169 (1150)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999865
No 208
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=31.67 E-value=13 Score=35.25 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.3
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999743
No 209
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.57 E-value=1.3e+02 Score=25.12 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHH
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRV 718 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~ 718 (1150)
+.+++..|++.+..+.+++....+.+.-+.... +. .-..++...++|..++.||..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----~~--~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 3 FANTKKTLENQVEELTEKCSLKTDEFLKAKEKI----NE--IFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHh
Confidence 468889999999999999988777665544433 22 235677888888888888754
No 210
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=31.51 E-value=22 Score=35.92 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=14.9
Q ss_pred CeEEEEeccCCCCCceee
Q 001118 152 NGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM 169 (1150)
...|.-.|.+|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356778999999999875
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=31.47 E-value=17 Score=45.37 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=36.3
Q ss_pred eEeeeeeeCCCCcchhHHHHHHHHHHHH-hhcC----CCeEEEEeccCCCCCceee
Q 001118 119 AYGFDKVFGPATTTRHVYDVAAQHVVNG-AMQG----INGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 119 ~F~FD~VF~~~atQeeVYe~vv~plV~~-vL~G----yN~tIfAYGQTGSGKTyTM 169 (1150)
.+.||.|.+....-+.+.+.+..|+... ++.. ....|+-||++|||||+.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4788999888777777777666655432 2322 2346899999999999765
No 212
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.38 E-value=54 Score=29.48 Aligned_cols=30 Identities=37% Similarity=0.293 Sum_probs=27.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001118 765 RILQEQLQMKISENTEMQETILLLRQQIDS 794 (1150)
Q Consensus 765 rilqeql~~k~~e~~elqe~v~~l~qql~~ 794 (1150)
|=||+.|+.|..|+...++.|..|+.+|+.
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~e 51 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999865
No 213
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=31.36 E-value=3.1e+02 Score=25.08 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=38.7
Q ss_pred cccccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 400 IKASQNKIMDEKSLIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKAALLG 479 (1150)
Q Consensus 400 nk~~vN~i~d~~~li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~Lee~ee~~~~L~~ 479 (1150)
.+|-.+.. ....-+.....++..|+..+..... ...++.....++......|+.++.+.++.+..|..
T Consensus 3 VKPLL~~~-~~eeEm~~~eeel~~lke~l~k~e~-----------~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~ 70 (89)
T 3bas_A 3 HMPLLSIA-RQEEEMKEQLKQMDKMKEDLAKTER-----------IKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLS 70 (89)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccc-hhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444432 2234456667777777777654321 12233333444444455555557777777777766
Q ss_pred HHHHHHHHH
Q 001118 480 RIQRLTKLI 488 (1150)
Q Consensus 480 ~i~~L~k~i 488 (1150)
+...|...|
T Consensus 71 ~K~eLE~~l 79 (89)
T 3bas_A 71 KNYHLENEV 79 (89)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665555
No 214
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=31.35 E-value=15 Score=44.18 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.2
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..++..|+.|||||+|+.
T Consensus 196 ~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 456789999999999975
No 215
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=30.77 E-value=15 Score=42.13 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=19.2
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..++.|.+. +++.|+||||||.+.
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 4567788664 567799999999873
No 216
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=30.53 E-value=22 Score=42.05 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=18.9
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
-++..++.| ..|+-||++|+|||+..
T Consensus 33 ~l~~al~~~--~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 33 LCLLAALSG--ESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHT--CEEEEECCSSSSHHHHH
T ss_pred HHHHHHhcC--CeeEeecCchHHHHHHH
Confidence 344444555 46788999999999876
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=30.29 E-value=26 Score=42.95 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=15.0
Q ss_pred eEEEEeccCCCCCceee
Q 001118 153 GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM 169 (1150)
+.|+-||++|+|||++.
T Consensus 522 ~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 37999999999999875
No 218
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=30.12 E-value=12 Score=37.02 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.7
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..+.-.|++|||||+.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356678999999999875
No 219
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.11 E-value=1.2e+02 Score=30.00 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHH
Q 001118 872 EIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYENAKLNSELAAA 939 (1150)
Q Consensus 872 eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~qN~kl~~el~~~ 939 (1150)
|.-+++.+...|......++....-|-+|..=++.=.-.+--|+..|-+|+..|..++.+|.++|...
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444443333333333333333333333333334455567777888888888888888887643
No 220
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.60 E-value=29 Score=42.58 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=26.8
Q ss_pred eeeeeeCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 121 GFDKVFGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 121 ~FD~VF~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.||.|++ ++.... .++..+..+....++-||++|+|||....
T Consensus 178 ~ld~iiG----~~~~i~----~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 178 SLDPVIG----RSKEIQ----RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CSCCCCC----CHHHHH----HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccC----chHHHH----HHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 4555555 333333 34444445566678999999999998764
No 221
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.59 E-value=71 Score=29.15 Aligned_cols=33 Identities=9% Similarity=0.310 Sum_probs=27.6
Q ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q 001118 695 DSQLREHMQKLKDEISEKKLQIRVLEQRMIGSV 727 (1150)
Q Consensus 695 ~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~ 727 (1150)
..+.|-+++.|.++|...-.+|..|+.+|.+..
T Consensus 17 SykeqrEle~le~~Ie~LE~~i~~le~~ladp~ 49 (89)
T 2lw1_A 17 SYKLQRELEQLPQLLEDLEAKLEALQTQVADAS 49 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 346678899999999999999999999997643
No 222
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=29.50 E-value=13 Score=42.90 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.9
Q ss_pred hhcCCCeEEEEeccCCCCCceee
Q 001118 147 AMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 147 vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
++.|++..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 68999999999999999999755
No 223
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=29.30 E-value=29 Score=43.33 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.4
Q ss_pred eEEEEeccCCCCCceee
Q 001118 153 GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM 169 (1150)
+.|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999876
No 224
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=29.28 E-value=2.7e+02 Score=26.71 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhhhh
Q 001118 869 QAAEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLSYE 928 (1150)
Q Consensus 869 q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~~q 928 (1150)
-+.+|..||..+...+=.+..||.+-+-|.||-.|=|- +..+||.-|..|
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk----------~heeEl~eLq~q 116 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK----------LHEEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHSC
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 36788999999999999999999999999999998553 345677666544
No 225
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=29.05 E-value=22 Score=43.37 Aligned_cols=40 Identities=28% Similarity=0.245 Sum_probs=29.2
Q ss_pred eCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 126 FGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 126 F~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
|.|..+|..-+.. ++..+-.|... ....|.|||||||||.
T Consensus 7 ~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 7 PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 4788888877664 45555566533 3467999999999996
No 226
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.91 E-value=57 Score=27.47 Aligned_cols=39 Identities=36% Similarity=0.388 Sum_probs=29.9
Q ss_pred HHHhhhccchhhhhhhhhhhhhhHHHHHhHHHHHHHhhHHHHHHhh
Q 001118 881 VKLVEERDGLEIHSQKLAEEASYAKELASSAAVELRNLAEEVTRLS 926 (1150)
Q Consensus 881 ~~l~e~k~~l~~~nqkl~ee~syaK~LAsaaavElk~laeevtkl~ 926 (1150)
.+|.....+|-.+|.||++--. .|-.||..|.+||.+|.
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~-------~AR~el~~Lkeele~La 50 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLK-------EARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 3566666778889999987543 55679999999999884
No 227
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=28.91 E-value=23 Score=43.37 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=21.2
Q ss_pred HHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 142 HVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 142 plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.+++.+.......++-||++|+|||+.+.
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 34444444556667889999999999875
No 228
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=28.68 E-value=29 Score=42.46 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.3
Q ss_pred eEEEEeccCCCCCceee
Q 001118 153 GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM 169 (1150)
+.|+-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999876
No 229
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=28.51 E-value=1.1e+02 Score=27.81 Aligned_cols=68 Identities=10% Similarity=0.207 Sum_probs=45.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHH
Q 001118 701 HMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTE 780 (1150)
Q Consensus 701 ~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~e 780 (1150)
.|+.|.+||..--.|+-.==|++.+.-.+-....| -|=.--|++...+..-
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPD-----------------------------evNK~~~~~R~~~V~~ 56 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPD-----------------------------DVNKSTLQSRRAAVSA 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----------------------------HHHHHHHHHHHHHHHH
Confidence 37788888887777776666666554332111111 1122346778889999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 001118 781 MQETILLLRQQIDSLSN 797 (1150)
Q Consensus 781 lqe~v~~l~qql~~~~~ 797 (1150)
||.+++.||+||+++..
T Consensus 57 lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 57 LETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 230
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=28.48 E-value=24 Score=38.75 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=15.0
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..|.-.|++|||||+++.
T Consensus 101 ~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH
Confidence 357778999999999983
No 231
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=28.42 E-value=23 Score=42.30 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=17.8
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
|..++.|.| ++..++||||||...
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Confidence 344567876 467889999999853
No 232
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=28.39 E-value=12 Score=41.97 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=14.9
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
|..++..|+||||||+++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHH
Confidence 3445677999999999874
No 233
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.35 E-value=99 Score=32.43 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=10.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001118 767 LQEQLQMKISENTEMQETILLLRQQI 792 (1150)
Q Consensus 767 lqeql~~k~~e~~elqe~v~~l~qql 792 (1150)
+|+||.+-=..+..||-++..|.|||
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql 36 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKL 36 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665
No 234
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=28.08 E-value=14 Score=36.79 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.0
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 235
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.03 E-value=50 Score=30.42 Aligned_cols=41 Identities=27% Similarity=0.192 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHHHhHH
Q 001118 871 AEIENLKQERVKLVEERDGLEIHSQKLAEEASYAKELASSA 911 (1150)
Q Consensus 871 ~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~LAsaa 911 (1150)
.|+++|..++..+.++-+.|...|+-|.+=|..|+-||+..
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i 78 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999998888764
No 236
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=27.99 E-value=1.7e+02 Score=28.32 Aligned_cols=21 Identities=33% Similarity=0.221 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 001118 413 LIKKYQKEITFLKQELQQLKR 433 (1150)
Q Consensus 413 li~~lqkEI~~Lk~EL~~lk~ 433 (1150)
.+..-+.+|..|++++.+.+.
T Consensus 39 aL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 39 ALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566777778877777544
No 237
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=27.95 E-value=2.2e+02 Score=28.78 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=50.2
Q ss_pred CCCchhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhc---CCcchHHHHHH----HHhHHHHHHHHHHHHHHHHHhh
Q 001118 653 SGTTITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAAS---NSEDSQLREHM----QKLKDEISEKKLQIRVLEQRMI 724 (1150)
Q Consensus 653 ~~~~~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~---~p~~~~i~~~~----~~l~~ei~~k~~q~~~le~~i~ 724 (1150)
|+..--.-...|++|+..+..|.+-----+||+..+..+ +|-+.+.+.++ ..++.|+.....+++.|.++|.
T Consensus 23 Te~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~ 101 (150)
T 4dci_A 23 TPTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQA 101 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556778899999999999999988999998877776 46665544443 2345555555556666666554
No 238
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.76 E-value=18 Score=36.83 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=18.8
Q ss_pred HHHhhcC-C--CeEEEEeccCCCCCceeec
Q 001118 144 VNGAMQG-I--NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 144 V~~vL~G-y--N~tIfAYGQTGSGKTyTM~ 170 (1150)
++.++.| + ...+.-+|++|+|||..+.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4555533 2 3467789999999998754
No 239
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=27.66 E-value=20 Score=44.75 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=19.1
Q ss_pred HHHHhhcCCCeEEEEeccCCCCCceee
Q 001118 143 VVNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 143 lV~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
+..+.-.|....++..|+||||||...
T Consensus 380 I~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 380 IRNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HHhhccccCCCcEEEEcCCCCCHHHHH
Confidence 333444455556788999999999865
No 240
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=27.61 E-value=3e+02 Score=29.86 Aligned_cols=134 Identities=16% Similarity=0.106 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhhhHhhhhchHHHHHHHHh-----cCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccc
Q 001118 661 MDLLHEQMKMLAGEVALCTSSLKRLSEQAA-----SNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLS 735 (1150)
Q Consensus 661 idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~-----~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~ 735 (1150)
+--++.+.+.|..|++.|...+..|.+.+. ++|.-..|+..++.|.+.-+..++-...-++++.++...-....+
T Consensus 43 l~~~~~kh~~le~El~a~e~~v~~v~~~g~~L~~~~hp~~~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~qF~~d 122 (283)
T 3pe0_A 43 MTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSD 122 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999988764 799999999999999999999888888888888887776554444
Q ss_pred cchhhhHHHHHHHhhcccchhhhhccchh---hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 001118 736 TTEMSQALSKLTTQLNEKTFELEIKSADN---RILQEQLQMKISENTEMQETILLLRQQIDSLS 796 (1150)
Q Consensus 736 ~~e~~q~~~~l~~qlnek~feleik~adn---rilqeql~~k~~e~~elqe~v~~l~qql~~~~ 796 (1150)
.-|+..-+.++.+++.-+.= +-..-|= --|..+++.=-.++.....+|..|.+|-..+.
T Consensus 123 a~e~e~Wl~~~~e~~~~~~s--~d~g~d~~s~~~LLkkh~~le~~l~~~~~~i~~L~~~a~~l~ 184 (283)
T 3pe0_A 123 VREAEGQLQKLQEALRRKYS--CDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVV 184 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--SCCCSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhcC--CccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444331100 0000000 01111222223456666777777777755544
No 241
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=27.56 E-value=96 Score=28.42 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=24.7
Q ss_pred HHHhhHHHHHHhhhhhhhhhhHHHHHHhhh
Q 001118 914 ELRNLAEEVTRLSYENAKLNSELAAAKEAL 943 (1150)
Q Consensus 914 Elk~laeevtkl~~qN~kl~~el~~~~~~~ 943 (1150)
|++.|-..|-.|..+|++|..|+..++...
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~ 30 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDI 30 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 577888889999999999999988776544
No 242
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=27.39 E-value=14 Score=40.38 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=16.7
Q ss_pred hhcCCCeEEEEeccCCCCCceee
Q 001118 147 AMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 147 vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
++.|++..|...|++|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 67899999999999999999765
No 243
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.34 E-value=1.4e+02 Score=28.86 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Q 001118 974 LVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLENELANMWVLIAKM 1034 (1150)
Q Consensus 974 ~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmwvlvakl 1034 (1150)
.++.|+.|+.+-+-.-++||+.|.+-+++ +...+.....+=..||.+|+.++.=.+..
T Consensus 44 ~iq~L~~el~~l~~~~~~LE~~l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQCANLQNAIADAEQR---GELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46688999999988899999999886554 44555666677788999999988655543
No 244
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.29 E-value=1.9e+02 Score=28.03 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Q 001118 973 LLVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDEAKRHEEDLENELANMWVLIAKM 1034 (1150)
Q Consensus 973 ~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e~k~~e~~len~lanmwvlvakl 1034 (1150)
..++.|..|+.+-+-.-++||+.|.+-++ .+...+......=..||.+|+.++.=.+..
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999988888999999988655 345556667777788999999988765543
No 245
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.28 E-value=21 Score=41.82 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.1
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
...++-||++|+|||++..
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578899999999998864
No 246
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=27.16 E-value=4.7e+02 Score=25.89 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=23.9
Q ss_pred HHhHHHHHHHhhHHHHHHhhhhhhhhhhHHHHHH
Q 001118 907 LASSAAVELRNLAEEVTRLSYENAKLNSELAAAK 940 (1150)
Q Consensus 907 LAsaaavElk~laeevtkl~~qN~kl~~el~~~~ 940 (1150)
....-..+++.|..++..|+..|..|...+-..+
T Consensus 44 ~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 44 VAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556777888888888888888876665444
No 247
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=27.04 E-value=5e+02 Score=26.20 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=64.6
Q ss_pred chhHHHHHHHHHHHHhhhhHhh-hhchHHHHHHHHh-----cCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcccc
Q 001118 656 TITDQMDLLHEQMKMLAGEVAL-CTSSLKRLSEQAA-----SNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVER 729 (1150)
Q Consensus 656 ~~~d~idlLrEQ~KmL~gEva~-~~s~Lkrl~e~A~-----~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~ 729 (1150)
...+.|..|+.+.+.+..|+.- +...+..+...|. .+|+...|+..+..|+..-.....-+..=.+++.++..
T Consensus 31 ~dl~~v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~- 109 (218)
T 3edu_A 31 QDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYD- 109 (218)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3567889999999999999975 7777777766554 67888888888877777666655555444444433321
Q ss_pred CccccccchhhhHHHHHHHhhcccchhh
Q 001118 730 TPHTLSTTEMSQALSKLTTQLNEKTFEL 757 (1150)
Q Consensus 730 s~~~~~~~e~~q~~~~l~~qlnek~fel 757 (1150)
.-...+.+.++...|.||.-.|
T Consensus 110 ------~~~F~~~~~e~~~Wl~ek~~~l 131 (218)
T 3edu_A 110 ------LHRYFYTGAEILGLIDEKHREL 131 (218)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhC
Confidence 1234456667777777776665
No 248
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=26.49 E-value=12 Score=42.40 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.0
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
+.-++.+|.||||||.++.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~ 71 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLR 71 (437)
T ss_dssp GGCEEEEECTTSSHHHHHH
T ss_pred cceEEEECCCCCCHHHHHH
Confidence 4667889999999999863
No 249
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=26.46 E-value=16 Score=43.32 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=17.0
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++.++..|..|||||+|+.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 35678889999999999985
No 250
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=26.19 E-value=41 Score=37.50 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=15.4
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
...|.-.|++|+|||+|+.
T Consensus 129 g~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3467778999999999873
No 251
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=26.17 E-value=18 Score=36.93 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=13.9
Q ss_pred eEEEEeccCCCCCceee
Q 001118 153 GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM 169 (1150)
..|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35666899999999876
No 252
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=26.04 E-value=19 Score=34.81 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=13.5
Q ss_pred eEEEEeccCCCCCcee
Q 001118 153 GTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyT 168 (1150)
..|+-.|..|||||+.
T Consensus 3 ~~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEecCCCCCHHHH
Confidence 3578899999999984
No 253
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.97 E-value=1.9e+02 Score=28.20 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=29.5
Q ss_pred hhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHH
Q 001118 672 AGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVL 719 (1150)
Q Consensus 672 ~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~l 719 (1150)
+.+.|.|+.+...|.+--.+ +..|.+.+++.|.+||+..+++++-.
T Consensus 45 eaQAaTCNqTV~tL~~SL~~--ekaq~q~~vqeLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 45 EAQAATANHTVMALMASLDA--EKAQGQKKVEELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888887776543222 22333566888888888777766543
No 254
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=25.73 E-value=16 Score=36.33 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.2
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999866
No 255
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=25.44 E-value=79 Score=30.59 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=46.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchh-hHHHHHHHHhhhhh
Q 001118 700 EHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADN-RILQEQLQMKISEN 778 (1150)
Q Consensus 700 ~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adn-rilqeql~~k~~e~ 778 (1150)
|.|+.|.+||..-..|+-+==|++.+.-.+ ||- |. -|=.--|++...+.
T Consensus 22 ~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~-------------------------~e~-----DPDevNK~tl~~R~~~V 71 (113)
T 4fi5_A 22 MTMEELQREINAHEGQLVIARQKVRDAEKQ-------------------------YEK-----DPDELNKRTLTDREGVA 71 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHH-----CCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hcC-----CCcHHHHHHHHHHHHHH
Confidence 447788888887777776666666554332 221 11 12233467788899
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 001118 779 TEMQETILLLRQQIDSLSNK 798 (1150)
Q Consensus 779 ~elqe~v~~l~qql~~~~~~ 798 (1150)
.-||.+|+.||+||+++...
T Consensus 72 s~lq~KiaeLKrqLAd~va~ 91 (113)
T 4fi5_A 72 VSIQAKIDELKRQLADRIAT 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999997753
No 256
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=25.37 E-value=26 Score=39.38 Aligned_cols=21 Identities=33% Similarity=0.175 Sum_probs=15.1
Q ss_pred hcCCCeEEEEeccCCCCCceeec
Q 001118 148 MQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 148 L~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.|.+. .-.|+||||||+++-
T Consensus 173 ~~G~~i--~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 173 QLERVI--VVAGETGSGKTTLMK 193 (361)
T ss_dssp HTTCCE--EEEESSSSCHHHHHH
T ss_pred hcCCEE--EEECCCCCCHHHHHH
Confidence 356543 445999999999873
No 257
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.29 E-value=3.1e+02 Score=26.92 Aligned_cols=113 Identities=14% Similarity=0.187 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHH-------------HHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRL-------------SEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRM 723 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl-------------~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i 723 (1150)
|.|-+=+||+++..|+.=..-+-..|.|- +.-.+..|........++.+-..|=.|-+||..|=--+
T Consensus 1 MaDrlTQLQd~ldqla~~f~nsig~Lq~~a~p~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~k~kqIe~LIdsL 80 (132)
T 1ykh_B 1 MTDRMTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSL 80 (132)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57888899999999985444443444432 22222233444556778888888888888888764433
Q ss_pred hhccccCccccccchhhh--HHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001118 724 IGSVERTPHTLSTTEMSQ--ALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQ 791 (1150)
Q Consensus 724 ~~s~~~s~~~~~~~e~~q--~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qq 791 (1150)
.+.. .++--| .|.+|- +.|+...++|++++.|-+.|-+.|..+-..
T Consensus 81 P~~~--------~see~Q~~ri~~L~--------------~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 81 PGVD--------VSAEEQLRKIDMLQ--------------KKLVEVEDEKIEAIKKKEKLMRHVDSMIED 128 (132)
T ss_dssp TTTT--------CCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCC--------CCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 111111 233332 356777888888888888888877665443
No 258
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=25.23 E-value=16 Score=35.96 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=14.2
Q ss_pred eEEEEeccCCCCCceee
Q 001118 153 GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM 169 (1150)
..|.-.|++|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999865
No 259
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=25.23 E-value=16 Score=39.39 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=15.9
Q ss_pred CCeEEEEeccCCCCCceee
Q 001118 151 INGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM 169 (1150)
|+-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4567888999999999766
No 260
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=25.13 E-value=15 Score=39.32 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=16.7
Q ss_pred CeEEEEeccCCCCCceeec
Q 001118 152 NGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 152 N~tIfAYGQTGSGKTyTM~ 170 (1150)
...||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3568999999999999986
No 261
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=25.05 E-value=18 Score=41.67 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=22.7
Q ss_pred eCCCCcchhHHHHHHHHHHHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 126 FGPATTTRHVYDVAAQHVVNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 126 F~~~atQeeVYe~vv~plV~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
|.+..-|...+.. ++.|.+ ++..|+||||||.+..
T Consensus 112 ~~l~~~Q~~ai~~--------~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 112 IEPHWYQKDAVFE--------GLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp ECCCHHHHHHHHH--------HHHHSE--EEEECCSTTTHHHHHH
T ss_pred CCCCHHHHHHHHH--------HHhcCC--cEEEeCCCCCHHHHHH
Confidence 3555556555543 334433 5678999999999864
No 262
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=24.94 E-value=20 Score=35.13 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=13.0
Q ss_pred EEEEeccCCCCCcee
Q 001118 154 TVFAYGVTSSGKTHT 168 (1150)
Q Consensus 154 tIfAYGQTGSGKTyT 168 (1150)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999974
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=24.92 E-value=20 Score=34.81 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.4
Q ss_pred eEEEEeccCCCCCceee
Q 001118 153 GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM 169 (1150)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999764
No 264
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.73 E-value=78 Score=28.09 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001118 972 GLLVEELQKELSSRYQREADLEAALSEREQVEGELRKRIDE 1012 (1150)
Q Consensus 972 ~~~~~~~~~el~~~~~re~~~e~~l~ek~~~e~e~~~~~~e 1012 (1150)
+-.++++...++.+.+|=..||+.|.+|+..=.+|+..++.
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33468899999999999999999999999999999988764
No 265
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=24.71 E-value=15 Score=36.58 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=12.5
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999876
No 266
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.64 E-value=48 Score=30.52 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhccchhhhhhhhhhhhhhHHHH
Q 001118 872 EIENLKQERVKLVEERDGLEIHSQKLAEEASYAKEL 907 (1150)
Q Consensus 872 eie~lk~~~~~l~e~k~~l~~~nqkl~ee~syaK~L 907 (1150)
|+++|.+++..|.|+.+.|...|+.|.+=+..++-+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~m 82 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999998888888888887765555444444
No 267
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=24.36 E-value=93 Score=29.29 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhhhhhhhhhh
Q 001118 869 QAAEIENLKQERVKLVEERDGLEIHSQKLAEEAS 902 (1150)
Q Consensus 869 q~~eie~lk~~~~~l~e~k~~l~~~nqkl~ee~s 902 (1150)
--+--|++..++.+|.+....|..+|++|-.|++
T Consensus 59 ERadREkl~~eKe~L~~ql~~lq~q~~~L~~~~~ 92 (94)
T 3jsv_C 59 ERHAREKLVEKKEYLQEQLEQLQREFNKLKVGCH 92 (94)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455677888888888888888888888888765
No 268
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=24.19 E-value=27 Score=38.21 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=14.9
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..|.-.|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356668999999999984
No 269
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=24.19 E-value=25 Score=42.22 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=18.3
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceeec
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
|..++. +..++..|..|||||+++.
T Consensus 198 v~~~~~--~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 198 LDQLAG--HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHTT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHh--CCEEEEEcCCCCCHHHHHH
Confidence 344443 3567779999999999874
No 270
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=24.04 E-value=30 Score=36.91 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=15.7
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..++-||+.|+|||..+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 678899999999998764
No 271
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=23.89 E-value=24 Score=44.05 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.3
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..++..|+.|||||+|+.
T Consensus 376 ~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 356789999999999985
No 272
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=23.76 E-value=20 Score=35.09 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.0
Q ss_pred eEEEEeccCCCCCceee
Q 001118 153 GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM 169 (1150)
..|+..|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999854
No 273
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=23.62 E-value=25 Score=43.89 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.3
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..++..|+.|||||+|+.
T Consensus 372 ~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 456789999999999985
No 274
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.34 E-value=4.8e+02 Score=24.68 Aligned_cols=87 Identities=17% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhh
Q 001118 662 DLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQ 741 (1150)
Q Consensus 662 dlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q 741 (1150)
+-||+++.-|..+++. +..++++|.+++.+-+.+-...|+ .+..+.+
T Consensus 8 e~lre~l~~le~~~~~--------------------~~~e~~~L~~~l~eE~~~R~~aE~-------------~~~~ie~ 54 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSD--------------------RDDEVKRLREDIAKENELRTKAEE-------------EADKLNK 54 (97)
T ss_dssp HHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH
Q ss_pred HHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001118 742 ALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDS 794 (1150)
Q Consensus 742 ~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~ 794 (1150)
-+..||++| .=-|.+-|..+ --+...++.++..|+.||.+
T Consensus 55 ElEeLTasL--------FeEAN~MVa~a-----r~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 55 EVEDLTASL--------FDEANNMVADA-----RKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHH--------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhh
No 275
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=23.29 E-value=28 Score=42.87 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=17.9
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
|..++.|.| ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 344567866 567789999999874
No 276
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=23.24 E-value=40 Score=41.65 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHh-hcCCCeEEEEeccCCCCCceeec
Q 001118 134 HVYDVAAQHVVNGA-MQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 134 eVYe~vv~plV~~v-L~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.||... ......+ -.+.|-||+.-|-+|||||.+.-
T Consensus 76 HifaiA-~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 112 (697)
T 1lkx_A 76 HMYALA-NDAYRSMRQSQENQCVIISGESGAGKTEASK 112 (697)
T ss_dssp CHHHHH-HHHHHHHHHHCCCEEEEEECSTTSSHHHHHH
T ss_pred hHHHHH-HHHHHHHHhcCCCcEEEecCCCCCCchhhHH
Confidence 566433 2333333 37999999999999999998863
No 277
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.24 E-value=60 Score=28.14 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=25.5
Q ss_pred HHHhhHHHHHHhhhhhhhhhhHHHHHHhhh
Q 001118 914 ELRNLAEEVTRLSYENAKLNSELAAAKEAL 943 (1150)
Q Consensus 914 Elk~laeevtkl~~qN~kl~~el~~~~~~~ 943 (1150)
.+..|..+|..|..+|+.|.+|+...+...
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999988754
No 278
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=23.19 E-value=19 Score=36.74 Aligned_cols=18 Identities=39% Similarity=0.366 Sum_probs=14.4
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..+.-+|++|||||+.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 345668999999998774
No 279
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.18 E-value=1.8e+02 Score=26.97 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=40.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhh
Q 001118 696 SQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKI 775 (1150)
Q Consensus 696 ~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~ 775 (1150)
++|+..++.|+.++.....+|..++-++. +.+.....+...++...-| |||.+-=.+|+-=-.++-
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~--------~~~~~~~~~~hI~~Lh~YN------eiKD~gq~L~g~iA~~rg 69 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK--------NRDAKQTVQKHIDLLHTYN------EIRDIALGMIGKVAEHEK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS--------SSCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cCCHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHcC
Confidence 44555555555555555555555554442 2233566777788888888 788876665554333333
Q ss_pred hhhHH
Q 001118 776 SENTE 780 (1150)
Q Consensus 776 ~e~~e 780 (1150)
+-..+
T Consensus 70 v~~~~ 74 (85)
T 3viq_B 70 CTSVE 74 (85)
T ss_dssp SCGGG
T ss_pred CcHHH
Confidence 33333
No 280
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=23.17 E-value=21 Score=39.34 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=14.7
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..|.-.|++|||||+++.
T Consensus 103 ~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 356667999999999883
No 281
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=23.14 E-value=38 Score=37.01 Aligned_cols=36 Identities=17% Similarity=0.078 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHhh--cCCCeEEEEeccCCCCCceee
Q 001118 134 HVYDVAAQHVVNGAM--QGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 134 eVYe~vv~plV~~vL--~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.+++.++..+..... .+-...|.-.|.+|||||+.+
T Consensus 11 ~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 455555544444222 234456677899999999865
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=23.13 E-value=20 Score=35.67 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.4
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999765
No 283
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=23.10 E-value=1.5e+02 Score=28.09 Aligned_cols=67 Identities=10% Similarity=0.211 Sum_probs=44.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHH
Q 001118 702 MQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEM 781 (1150)
Q Consensus 702 ~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~el 781 (1150)
|+.|.+||..--.|+-+==|++.+...+-....| -|=.--|++...+..-|
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPD-----------------------------evNk~~~~~R~~~V~~l 57 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPD-----------------------------DVNKSTLQSRRAAVSAL 57 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----------------------------HHHHHHHHHHHHHHHHH
Confidence 6778888877777766666665554332111111 11223467788899999
Q ss_pred HHHHHHHHHHHHHhhh
Q 001118 782 QETILLLRQQIDSLSN 797 (1150)
Q Consensus 782 qe~v~~l~qql~~~~~ 797 (1150)
|.+|+.|++||+++..
T Consensus 58 q~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 58 ETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 284
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.96 E-value=1.7e+02 Score=27.80 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=25.3
Q ss_pred HHHHHhhHHHHHHhhhhhhhhhhHHHHHHhh
Q 001118 912 AVELRNLAEEVTRLSYENAKLNSELAAAKEA 942 (1150)
Q Consensus 912 avElk~laeevtkl~~qN~kl~~el~~~~~~ 942 (1150)
.+-+..|+.||-+|.-+|.+|-.|=..-+-.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5667899999999999999998876665543
No 285
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=22.92 E-value=1.4e+02 Score=25.45 Aligned_cols=51 Identities=29% Similarity=0.433 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhh-----hHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHH
Q 001118 661 MDLLHEQMKMLAG-----EVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISE 711 (1150)
Q Consensus 661 idlLrEQ~KmL~g-----Eva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~ 711 (1150)
++-|.|++|-|-| |.--.---||.-+|+-+---+--+++.++++|+.||+.
T Consensus 11 vkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 11 VKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 4445555555432 33334456778888888888888888999999999873
No 286
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=22.90 E-value=36 Score=38.55 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=15.1
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..|.-.|++|||||+|+.
T Consensus 158 ~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 367778999999999983
No 287
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=22.84 E-value=24 Score=36.29 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=9.2
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 288
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=22.82 E-value=26 Score=44.36 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=17.5
Q ss_pred HHhhcCCCeEEEEeccCCCCCceee
Q 001118 145 NGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 145 ~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
..++.|.| ++..++||||||.+.
T Consensus 258 ~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 258 QPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCC--EEEEeCCCchHHHHH
Confidence 44567876 466789999999874
No 289
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=22.82 E-value=17 Score=36.88 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=13.9
Q ss_pred EEEEeccCCCCCceeec
Q 001118 154 TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~ 170 (1150)
.|.-.|++|||||.++-
T Consensus 6 ~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45668999999998873
No 290
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=22.78 E-value=18 Score=36.47 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.7
Q ss_pred EEEeccCCCCCceee
Q 001118 155 VFAYGVTSSGKTHTM 169 (1150)
Q Consensus 155 IfAYGQTGSGKTyTM 169 (1150)
+.-.|++|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999876
No 291
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.36 E-value=1.9e+02 Score=24.79 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001118 455 QLEAGQVKLQSRLEEEEQEKAALLGRIQRLTKLILV 490 (1150)
Q Consensus 455 qle~~~~~Lq~~Lee~ee~~~~L~~~i~~L~k~il~ 490 (1150)
.|...+..|-.++.+++..+...+.+|.+|.+++-.
T Consensus 15 kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 15 RLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888888899999999999998754
No 292
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.16 E-value=2e+02 Score=33.67 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcc
Q 001118 658 TDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPH 732 (1150)
Q Consensus 658 ~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~ 732 (1150)
.-+++.|+.+.|.++-+|+- +| ....+-.++..+++.|+++|++...++..+|.++...+..-++
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~----~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 108 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGK----RR------KKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HH------TSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH----hh------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34455555666666555542 11 1123446888999999999999999999999998776665444
No 293
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=22.10 E-value=21 Score=35.34 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.4
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|.-.|++|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566899999999876
No 294
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=22.03 E-value=3.2e+02 Score=24.77 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001118 413 LIKKYQKEITFLKQELQQLKRGMMDNPHMAASSQDDLVNLKLQLEAGQVKLQSRLEEEEQEKAALLGRIQRLT 485 (1150)
Q Consensus 413 li~~lqkEI~~Lk~EL~~lk~~~~~~~~~~~~~~~e~~~lk~qle~~~~~Lq~~Lee~ee~~~~L~~~i~~L~ 485 (1150)
-+..+..+|..|..++..+...+.+. .......+.+..+ ..++.+.+.+...++.+...|.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp-~~y~~d~~~~~~l-----------~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADA-SFFSQPHEQTQKV-----------LADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHST-TGGGSCHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc-ccccCCHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888887777776655432 2222233334333 3344444444455555555543
No 295
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=22.02 E-value=18 Score=38.32 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.7
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..++-||.+|+|||..++
T Consensus 13 ~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELI 30 (223)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 567889999999999876
No 296
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=21.98 E-value=44 Score=41.80 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHh-hcCCCeEEEEeccCCCCCceee
Q 001118 134 HVYDVAAQHVVNGA-MQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 134 eVYe~vv~plV~~v-L~GyN~tIfAYGQTGSGKTyTM 169 (1150)
.||.. +......+ -.+.|-||+..|-+|||||.+.
T Consensus 154 Hifai-A~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 154 HIFAI-SDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp CHHHH-HHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred cHHHH-HHHHHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 46643 33333333 3799999999999999999886
No 297
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.89 E-value=2.2e+02 Score=33.81 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHhcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcc
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTPH 732 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~ 732 (1150)
..-+++.||.+.|.++-+|+- +|+ ...+-+.+..+++.|+++|++...++..+|.++...+..-++
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~----~k~------~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGK----RFK------AKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHH------TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----Hhc------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344566666677777766642 222 112345688899999999999999999999998776655443
No 298
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=21.75 E-value=18 Score=42.48 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=17.6
Q ss_pred HHHhhcCCCeEEEEeccCCCCCceee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyTM 169 (1150)
|..++.|.++ +..++||||||.+.
T Consensus 34 i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 34 IDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHcCCCE--EEECCCCcHHHHHH
Confidence 4456678764 55679999999764
No 299
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=21.70 E-value=58 Score=35.65 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.0
Q ss_pred EEEEeccCCCCCceeec
Q 001118 154 TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~ 170 (1150)
.|+..|.+|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999874
No 300
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.63 E-value=74 Score=35.86 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=29.7
Q ss_pred hhhHHHHHHHhhcccchhhhhccchhhH--HHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001118 739 MSQALSKLTTQLNEKTFELEIKSADNRI--LQEQLQMKISENTEMQETILLLRQQI 792 (1150)
Q Consensus 739 ~~q~~~~l~~qlnek~feleik~adnri--lqeql~~k~~e~~elqe~v~~l~qql 792 (1150)
+.+.+++|.++++. +|.-|+.++..| ||++|...-..+.+|+..|..|+.++
T Consensus 3 ~~~~~~~~~~~~~~--~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 3 GQKTVQKILEEVRI--LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp --CHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777775 566677666554 55555554444555555555555443
No 301
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=21.49 E-value=45 Score=41.76 Aligned_cols=37 Identities=19% Similarity=0.420 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHh-hcCCCeEEEEeccCCCCCceeec
Q 001118 133 RHVYDVAAQHVVNGA-MQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 133 eeVYe~vv~plV~~v-L~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.||... ......+ -.+.|-||+.-|-+|||||.+.-
T Consensus 121 PHifaiA-~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK 158 (784)
T 2v26_A 121 PHVFAIA-DKAFRDMKVLKLSQSIIVSGESGAGKTENTK 158 (784)
T ss_dssp SCHHHHH-HHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred chHHHHH-HHHHHHHHhcCCCcEEEEcCCCCCCceehHH
Confidence 3466433 2333333 37999999999999999998863
No 302
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=21.48 E-value=21 Score=35.00 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=13.4
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5567899999999765
No 303
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=21.40 E-value=28 Score=39.72 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.9
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999874
No 304
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=21.35 E-value=16 Score=37.09 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=14.9
Q ss_pred EEEEeccCCCCCceeec
Q 001118 154 TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~ 170 (1150)
.++-||+.|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56789999999999876
No 305
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=21.34 E-value=25 Score=34.29 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.0
Q ss_pred eEEEEeccCCCCCceee
Q 001118 153 GTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM 169 (1150)
..|+-.|..|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999753
No 306
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=21.19 E-value=25 Score=42.37 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.4
Q ss_pred CCeEEEEeccCCCCCceeec
Q 001118 151 INGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 151 yN~tIfAYGQTGSGKTyTM~ 170 (1150)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46788889999999999986
No 307
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=21.14 E-value=44 Score=43.01 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHh-hcCCCeEEEEeccCCCCCceeec
Q 001118 133 RHVYDVAAQHVVNGA-MQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 133 eeVYe~vv~plV~~v-L~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
-.||.. +......+ -.+.|-||+..|-+|||||.+.-
T Consensus 153 PHifai-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 190 (1010)
T 1g8x_A 153 PHIFAI-SDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (1010)
T ss_dssp CCHHHH-HHHHHHHHHHHTCCEEEEEEESTTSSHHHHHH
T ss_pred ccHHHH-HHHHHHHHHhcCCCeEEEEeCCCCCCcchHHH
Confidence 356753 33333333 37999999999999999998863
No 308
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.93 E-value=2.1e+02 Score=28.83 Aligned_cols=115 Identities=12% Similarity=0.140 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhchHHHHHHHHh-------------cCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 001118 657 ITDQMDLLHEQMKMLAGEVALCTSSLKRLSEQAA-------------SNSEDSQLREHMQKLKDEISEKKLQIRVLEQRM 723 (1150)
Q Consensus 657 ~~d~idlLrEQ~KmL~gEva~~~s~Lkrl~e~A~-------------~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i 723 (1150)
|.|-+-+||+++..|+.=..-+-..|.|-..-+. ..|..+.....++.+-..|=.|-+||..|=--+
T Consensus 1 MaDrLTQLQd~ldqLa~~f~nsig~Lq~~app~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~kakqIe~LIdsL 80 (151)
T 1yke_B 1 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSL 80 (151)
T ss_dssp --CCHHHHHHHHHHHHHHTTTTHHHHHHTTGGGGCCC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677889999999998544433344444333222 223334445677788888888888887763333
Q ss_pred hhccccCccccccchhhh--HHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001118 724 IGSVERTPHTLSTTEMSQ--ALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQID 793 (1150)
Q Consensus 724 ~~s~~~s~~~~~~~e~~q--~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~ 793 (1150)
.+.. .++--| .|.+|- +.|+...++|++++.|-+.|-+.|..+-..++
T Consensus 81 Pg~~--------~seeeQ~~ri~~Le--------------~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia 130 (151)
T 1yke_B 81 PGVD--------VSAEEQLRKIDMLQ--------------KKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFV 130 (151)
T ss_dssp TTSS--------SCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCC--------CCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 121111 233322 35777888888899888888887777666543
No 309
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=20.90 E-value=41 Score=40.04 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=14.6
Q ss_pred EEEEeccCCCCCceeec
Q 001118 154 TVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM~ 170 (1150)
.|.-.|++|||||.++.
T Consensus 295 VI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCcccHHHHHH
Confidence 57778999999999883
No 310
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=20.89 E-value=41 Score=43.04 Aligned_cols=23 Identities=43% Similarity=0.397 Sum_probs=17.3
Q ss_pred HHHhhcCCCeEEEEeccCCCCCcee
Q 001118 144 VNGAMQGINGTVFAYGVTSSGKTHT 168 (1150)
Q Consensus 144 V~~vL~GyN~tIfAYGQTGSGKTyT 168 (1150)
|..++.|. .++..|+||||||.+
T Consensus 48 I~~il~g~--~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGD--SVFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTC--EEEEECCTTSCSHHH
T ss_pred HHHHHcCC--CEEEEECCCCcHHHH
Confidence 34556775 478899999999964
No 311
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=20.83 E-value=5.7e+02 Score=27.15 Aligned_cols=130 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhhHhh-hhchHHHHHHHH-----hcCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccCc
Q 001118 658 TDQMDLLHEQMKMLAGEVAL-CTSSLKRLSEQA-----ASNSEDSQLREHMQKLKDEISEKKLQIRVLEQRMIGSVERTP 731 (1150)
Q Consensus 658 ~d~idlLrEQ~KmL~gEva~-~~s~Lkrl~e~A-----~~~p~~~~i~~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~ 731 (1150)
.+.+..|+.+.+.+..|+.- +...+..|...| ..+|....|+..+..|+..-..-..-+..-.+++..+...
T Consensus 142 ~~~v~~l~~~~~~f~~el~~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~a~~~-- 219 (326)
T 3kbt_A 142 FDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDL-- 219 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred cccccchhhhHHHHHHHhhcccchhhhhccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 001118 732 HTLSTTEMSQALSKLTTQLNEKTFELEIKSADNRILQEQLQMKISENTEMQETILLLRQQIDSLSN 797 (1150)
Q Consensus 732 ~~~~~~e~~q~~~~l~~qlnek~feleik~adnrilqeql~~k~~e~~elqe~v~~l~qql~~~~~ 797 (1150)
....+.+.++...|.||.-.| +.|--.=-.-++.-......++..|..++.++..+..
T Consensus 220 -----~~f~~~~~e~~~Wl~ek~~~L---~~~~~~d~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~ 277 (326)
T 3kbt_A 220 -----HRYFYTGAEILGLIDEKHREL---PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQD 277 (326)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHC------------------------CHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhhC---cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 312
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=20.80 E-value=47 Score=42.66 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHh-hcCCCeEEEEeccCCCCCceeec
Q 001118 134 HVYDVAAQHVVNGA-MQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 134 eVYe~vv~plV~~v-L~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.||.. +......+ -.+.|-||+..|-+|||||.+.-
T Consensus 128 Hifai-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 164 (995)
T 2ycu_A 128 HVYAV-TEGAYRSMLQDREDQSILCTGESGAGKTENTK 164 (995)
T ss_dssp CHHHH-HHHHHHHHHHHCCCEEEEEECBTTSSHHHHHH
T ss_pred hHHHH-hHHHHHHHHhcCCCcEEEecCCCCCCchhhHH
Confidence 46643 33333333 37999999999999999998863
No 313
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=20.72 E-value=28 Score=35.00 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.7
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6788999999999764
No 314
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=20.72 E-value=26 Score=37.44 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=15.8
Q ss_pred eEEEEeccCCCCCceeec
Q 001118 153 GTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 153 ~tIfAYGQTGSGKTyTM~ 170 (1150)
..++-||+.|+|||+.+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 589999999999998764
No 315
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=20.69 E-value=26 Score=33.84 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=13.5
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|+-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999864
No 316
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=20.59 E-value=39 Score=32.42 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=21.1
Q ss_pred HHHHHhhc-CCCeEEEEeccCCCCCceee
Q 001118 142 HVVNGAMQ-GINGTVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 142 plV~~vL~-GyN~tIfAYGQTGSGKTyTM 169 (1150)
.++..++. .....|...|.+|+|||..+
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 34555555 56678899999999999765
No 317
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=20.46 E-value=23 Score=35.86 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=12.9
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
++.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4455799999999876
No 318
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.21 E-value=1.7e+02 Score=35.09 Aligned_cols=59 Identities=8% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhccccCccccccchhhhHHHHHHHhhcccchhhhhc
Q 001118 700 EHMQKLKDEISEKKLQIRVLEQRMIGSVERTPHTLSTTEMSQALSKLTTQLNEKTFELEIK 760 (1150)
Q Consensus 700 ~~~~~l~~ei~~k~~q~~~le~~i~~s~~~s~~~~~~~e~~q~~~~l~~qlnek~feleik 760 (1150)
.+|++.-++|+.....+-.+=+.|++.+......+ .++.-+|.+++.+|+.+.=.|++|
T Consensus 67 NELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~--~dNdNtynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 67 NKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSA--NNRDNTYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHH--HHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHHHHHHHH
Confidence 45666666776666666666666666665544333 266678888888888877766654
No 319
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=20.18 E-value=29 Score=33.20 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=13.3
Q ss_pred EEEEeccCCCCCceee
Q 001118 154 TVFAYGVTSSGKTHTM 169 (1150)
Q Consensus 154 tIfAYGQTGSGKTyTM 169 (1150)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999754
No 320
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=20.12 E-value=46 Score=41.94 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHh-hcCCCeEEEEeccCCCCCceeec
Q 001118 134 HVYDVAAQHVVNGA-MQGINGTVFAYGVTSSGKTHTMH 170 (1150)
Q Consensus 134 eVYe~vv~plV~~v-L~GyN~tIfAYGQTGSGKTyTM~ 170 (1150)
.||. ++......+ -++.|-||+..|-+|||||.+.-
T Consensus 151 Hifa-iA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK 187 (837)
T 1kk8_A 151 HLFS-VADNAYQNMVTDRENQSCLITGESGAGKTENTK 187 (837)
T ss_dssp CHHH-HHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHH
T ss_pred cHHH-HHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHH
Confidence 4664 333333333 37999999999999999998863
Done!