BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001119
(1150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HPQ|C Chain C, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
pdb|4HPQ|F Chain F, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
Length = 413
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 31 LKEAGLDEVSIKRR----------DKAALIAYIAKLETEIFEHQHHM----GLLILEKKE 76
L++A +D S R+ DKA + A ++KL TE+ +H+ ++ G+ L +K
Sbjct: 254 LQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFEGISALIQKF 313
Query: 77 LASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 132
AS E I+ + + +R+ H + + E ++R+E+ K + K C LE+
Sbjct: 314 KASCLEDIRQTRNLLDFYANFERSYH-NLLKEVKRRKETAAKLSQILKSCETQLEQ 368
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 893 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 952
FGEP+ + E E+ N + ++ + V+ AARKRR V VD +
Sbjct: 138 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 184
Query: 953 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 982
+L RK E+ R + A+ H V
Sbjct: 185 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 214
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 893 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 952
FGEP+ + E E+ N + ++ + V+ AARKRR V VD +
Sbjct: 140 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 186
Query: 953 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 982
+L RK E+ R + A+ H V
Sbjct: 187 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 216
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 893 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 952
FGEP+ + E E+ N + ++ + V+ AARKRR V VD +
Sbjct: 140 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 186
Query: 953 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 982
+L RK E+ R + A+ H V
Sbjct: 187 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 216
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 893 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 952
FGEP+ + E E+ N + ++ + V+ AARKRR V VD +
Sbjct: 140 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 186
Query: 953 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 982
+L RK E+ R + A+ H V
Sbjct: 187 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 216
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 893 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 952
FGEP+ + E E+ N + ++ + V+ AARKRR V VD +
Sbjct: 143 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 189
Query: 953 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 982
+L RK E+ R + A+ H V
Sbjct: 190 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 219
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 893 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 952
FGEP+ + E E+ N + ++ + V+ AARKRR V VD +
Sbjct: 140 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 186
Query: 953 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 982
+L RK E+ R + A+ H V
Sbjct: 187 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 216
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|B Chain B, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|C Chain C, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|D Chain D, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
Length = 543
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 130 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 186
LE + + R AET A++ A C++ E A+ F K+ A + +AEA Y
Sbjct: 343 LESMITKARPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 402
Query: 187 HRSAERKLQEVVAREDDLSR 206
H R+L E + R LSR
Sbjct: 403 H----RQLFEELRRAAPLSR 418
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|B Chain B, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|C Chain C, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|D Chain D, Human Erythrocyte Pyruvate Kinase: R486w Mutant
Length = 528
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 130 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 186
LE + + R AET A++ A C++ E A+ F K+ A + +AEA Y
Sbjct: 328 LESMITKPRPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 387
Query: 187 HRSAERKLQEVVAREDDLSR 206
H R+L E + R LSR
Sbjct: 388 H----RQLFEELRRAAPLSR 403
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|B Chain B, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|C Chain C, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|D Chain D, Human Erythrocyte Pyruvate Kinase
Length = 528
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 130 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 186
LE + + R AET A++ A C++ E A+ F K+ A + +AEA Y
Sbjct: 328 LESMITKPRPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 387
Query: 187 HRSAERKLQEVVAREDDLSR 206
H R+L E + R LSR
Sbjct: 388 H----RQLFEELRRAAPLSR 403
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|B Chain B, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|C Chain C, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|D Chain D, Human Erythrocyte Pyruvate Kinase: R479h Mutant
Length = 528
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 130 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 186
LE + + R AET A++ A C++ E A+ F K+ A + +AEA Y
Sbjct: 328 LESMITKPRPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 387
Query: 187 HRSAERKLQEVVAREDDLSR 206
H R+L E + R LSR
Sbjct: 388 H----RQLFEELRRAAPLSR 403
>pdb|2JES|A Chain A, Portal Protein From Bacteriophage Spp1
pdb|2JES|C Chain C, Portal Protein From Bacteriophage Spp1
pdb|2JES|E Chain E, Portal Protein From Bacteriophage Spp1
pdb|2JES|G Chain G, Portal Protein From Bacteriophage Spp1
pdb|2JES|I Chain I, Portal Protein From Bacteriophage Spp1
pdb|2JES|K Chain K, Portal Protein From Bacteriophage Spp1
pdb|2JES|M Chain M, Portal Protein From Bacteriophage Spp1
pdb|2JES|O Chain O, Portal Protein From Bacteriophage Spp1
pdb|2JES|Q Chain Q, Portal Protein From Bacteriophage Spp1
pdb|2JES|S Chain S, Portal Protein From Bacteriophage Spp1
pdb|2JES|U Chain U, Portal Protein From Bacteriophage Spp1
pdb|2JES|W Chain W, Portal Protein From Bacteriophage Spp1
pdb|2JES|Y Chain Y, Portal Protein From Bacteriophage Spp1
Length = 503
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 360 SQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAW 412
S + +A ++ IQK+I H +K ++Y + E++IEKKRR +
Sbjct: 22 SAKEIAEPDTTMIQKLIDEHNPEPLLK--------GVRYYMCENDIEKKRRTY 66
>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|B Chain B, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|C Chain C, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|D Chain D, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp
Length = 543
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 130 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 186
LE + + R AET A++ A C++ E A+ F K+ A + +AEA Y
Sbjct: 343 LESMITKPRPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 402
Query: 187 HRSAERKLQEVVAREDDLSR 206
H R+L E + R LSR
Sbjct: 403 H----RQLFEELRRAAPLSR 418
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.126 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,434,680
Number of Sequences: 62578
Number of extensions: 956162
Number of successful extensions: 2675
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2605
Number of HSP's gapped (non-prelim): 103
length of query: 1150
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1041
effective length of database: 8,152,335
effective search space: 8486580735
effective search space used: 8486580735
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)