BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001119
         (1150 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
            OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1
          Length = 1042

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1046 (51%), Positives = 735/1046 (70%), Gaps = 85/1046 (8%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIF 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E++
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   EHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121
            ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G
Sbjct: 75   DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVG 134

Query: 122  VEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181
            + KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQA
Sbjct: 135  IAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQA 194

Query: 182  EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241
            EANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHE
Sbjct: 195  EANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHE 254

Query: 242  RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLK 301
            RLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    K
Sbjct: 255  RLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAK 314

Query: 302  REEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQ 361
            REEV   S   L   ++       F G+ I          AV ERE+SL KKEQ+LLV++
Sbjct: 315  REEVCFYSHNSLLFLVLHYRSSKKFLGDKI----------AVSERESSLLKKEQELLVAE 364

Query: 362  ETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQ 421
            E +ASKES  IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ Q
Sbjct: 365  EKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQ 424

Query: 422  REESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEE 481
            RE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE 
Sbjct: 425  REDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKER 484

Query: 482  VNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLEL 541
            +  +  +LQ+SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE+
Sbjct: 485  LRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEM 544

Query: 542  MVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAM 601
            + E D+L++EKAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+
Sbjct: 545  LAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDAL 604

Query: 602  RDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRRE 661
            R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +RE
Sbjct: 605  RNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKRE 664

Query: 662  ELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRD 721
            ELE+S R+REKAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+
Sbjct: 665  ELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERRE 724

Query: 722  REWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ 781
            REWAEL +S+EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ
Sbjct: 725  REWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQ 784

Query: 782  RSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTAS 834
             S LE S +K+SA   L Q+       +  D + D       V+N+ D +N+ S+++   
Sbjct: 785  LSNLERSWEKVSA---LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNG 834

Query: 835  ASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFG 894
             +P S   FSWIKR  +L+FK S E S                           + + + 
Sbjct: 835  LTPSSATPFSWIKRCTNLIFKTSPEKST--------------------------LMHHYE 868

Query: 895  EPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSEL 954
            E      VPSE       + LES   +  A     S++ + + A RKRR +    + SE 
Sbjct: 869  EEGG---VPSEK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE- 918

Query: 955  LMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNN 1014
               NNK+RK   D  +  S+EA     ++   N+PED+H L S +++  P G+       
Sbjct: 919  -PSNNKKRKH--DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM------- 967

Query: 1015 HTQGGNEEASILIVDKIIKISEVTCE 1040
                       +++ + +KI+ VTCE
Sbjct: 968  -----------VVISETVKITRVTCE 982


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.126    0.329 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,894,308
Number of Sequences: 539616
Number of extensions: 16354410
Number of successful extensions: 139759
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 4791
Number of HSP's that attempted gapping in prelim test: 83545
Number of HSP's gapped (non-prelim): 28340
length of query: 1150
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1021
effective length of database: 121,958,995
effective search space: 124520133895
effective search space used: 124520133895
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)