Query 001119
Match_columns 1150
No_of_seqs 40 out of 42
Neff 2.9
Searched_HMMs 46136
Date Thu Mar 28 16:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.4 1.9E-06 4.2E-11 103.5 66.5 52 524-575 622-678 (880)
2 KOG0161 Myosin class II heavy 99.4 1.8E-05 4E-10 102.6 79.0 562 149-762 907-1531(1930)
3 PRK02224 chromosome segregatio 99.2 5.7E-05 1.2E-09 91.2 71.5 94 108-205 147-240 (880)
4 TIGR00606 rad50 rad50. This fa 99.2 0.00011 2.4E-09 93.3 80.6 70 130-199 399-468 (1311)
5 TIGR02168 SMC_prok_B chromosom 99.0 0.00033 7.3E-09 84.9 74.3 29 715-743 993-1021(1179)
6 TIGR00606 rad50 rad50. This fa 99.0 0.00061 1.3E-08 86.9 72.9 77 170-247 576-652 (1311)
7 PRK03918 chromosome segregatio 98.8 0.0013 2.8E-08 79.4 71.9 41 212-252 244-284 (880)
8 TIGR02168 SMC_prok_B chromosom 98.6 0.0044 9.4E-08 75.5 82.3 9 857-865 1110-1118(1179)
9 TIGR02169 SMC_prok_A chromosom 98.6 0.0049 1.1E-07 75.6 77.8 43 527-569 803-845 (1164)
10 COG1196 Smc Chromosome segrega 98.6 0.0072 1.6E-07 76.6 76.0 48 679-729 958-1005(1163)
11 PRK03918 chromosome segregatio 98.6 0.0054 1.2E-07 74.3 66.3 16 19-34 31-46 (880)
12 PF12128 DUF3584: Protein of u 98.6 0.0086 1.9E-07 76.3 65.9 207 516-726 594-810 (1201)
13 KOG0161 Myosin class II heavy 98.5 0.014 3E-07 77.3 81.9 235 36-281 835-1088(1930)
14 TIGR02169 SMC_prok_A chromosom 98.5 0.0076 1.6E-07 74.0 72.2 49 45-93 231-279 (1164)
15 PRK01156 chromosome segregatio 98.5 0.0085 1.9E-07 73.4 71.8 58 690-747 670-727 (895)
16 COG1196 Smc Chromosome segrega 98.4 0.018 3.9E-07 73.2 75.2 94 54-149 216-312 (1163)
17 PRK01156 chromosome segregatio 98.4 0.018 3.8E-07 70.7 65.6 55 711-765 677-731 (895)
18 KOG1029 Endocytic adaptor prot 97.9 0.016 3.4E-07 70.7 31.3 217 384-624 316-566 (1118)
19 PF10174 Cast: RIM-binding pro 97.8 0.2 4.3E-06 62.2 62.2 484 134-666 5-533 (775)
20 COG0419 SbcC ATPase involved i 97.7 0.26 5.7E-06 61.4 71.8 65 511-576 555-619 (908)
21 PF07888 CALCOCO1: Calcium bin 97.7 0.21 4.6E-06 59.8 41.1 44 721-764 409-452 (546)
22 KOG4674 Uncharacterized conser 97.6 0.61 1.3E-05 62.1 75.2 465 40-565 861-1382(1822)
23 COG0419 SbcC ATPase involved i 97.6 0.44 9.6E-06 59.5 69.5 59 526-584 583-643 (908)
24 PF01576 Myosin_tail_1: Myosin 97.3 4.7E-05 1E-09 93.4 0.0 509 105-734 40-565 (859)
25 KOG0250 DNA repair protein RAD 97.3 0.16 3.5E-06 64.3 29.5 69 703-771 733-801 (1074)
26 KOG4674 Uncharacterized conser 97.0 2.6 5.6E-05 56.6 76.4 345 48-420 576-975 (1822)
27 PF07888 CALCOCO1: Calcium bin 97.0 1.5 3.3E-05 52.9 40.2 96 525-624 353-448 (546)
28 PRK11637 AmiB activator; Provi 96.6 1.3 2.8E-05 50.9 26.6 43 472-514 172-214 (428)
29 PF12128 DUF3584: Protein of u 96.5 4.7 0.0001 52.5 73.0 108 104-214 274-381 (1201)
30 PRK11637 AmiB activator; Provi 96.5 2.4 5.3E-05 48.8 28.0 26 628-653 158-183 (428)
31 PRK12704 phosphodiesterase; Pr 96.4 0.13 2.8E-06 61.1 18.1 79 387-472 59-137 (520)
32 PF00261 Tropomyosin: Tropomyo 96.4 1.4 3E-05 47.3 23.8 124 149-272 28-151 (237)
33 PRK00106 hypothetical protein; 96.3 0.58 1.3E-05 56.2 22.3 51 418-468 98-148 (535)
34 PF00038 Filament: Intermediat 96.2 2.6 5.6E-05 46.0 36.7 232 526-772 58-295 (312)
35 TIGR03319 YmdA_YtgF conserved 96.0 0.27 5.9E-06 58.4 18.1 76 386-468 52-127 (514)
36 PF08317 Spc7: Spc7 kinetochor 95.9 1.7 3.6E-05 48.8 22.5 167 433-605 126-292 (325)
37 PF00261 Tropomyosin: Tropomyo 95.8 3.4 7.4E-05 44.4 26.1 41 413-453 193-233 (237)
38 PHA02562 46 endonuclease subun 95.8 5.4 0.00012 46.5 31.2 46 692-737 356-401 (562)
39 PHA02562 46 endonuclease subun 95.8 5.5 0.00012 46.5 31.0 47 529-575 358-404 (562)
40 PRK12704 phosphodiesterase; Pr 95.6 0.23 5.1E-06 59.0 15.2 67 395-464 56-122 (520)
41 PF01576 Myosin_tail_1: Myosin 95.6 0.0033 7.2E-08 77.7 0.0 224 44-274 201-431 (859)
42 KOG0018 Structural maintenance 95.4 13 0.00028 48.3 31.9 295 396-717 181-481 (1141)
43 KOG0250 DNA repair protein RAD 95.3 14 0.0003 48.0 47.3 144 450-615 732-879 (1074)
44 PRK04863 mukB cell division pr 95.3 17 0.00037 48.9 43.0 160 127-291 232-412 (1486)
45 KOG0933 Structural maintenance 95.2 15 0.00032 47.6 32.7 30 834-865 1079-1111(1174)
46 TIGR03319 YmdA_YtgF conserved 95.1 0.3 6.6E-06 58.0 13.8 71 395-468 50-120 (514)
47 PF12072 DUF3552: Domain of un 95.0 0.72 1.6E-05 48.5 14.8 71 392-462 60-130 (201)
48 KOG0964 Structural maintenance 95.0 17 0.00036 47.0 34.4 127 429-558 357-489 (1200)
49 PF10174 Cast: RIM-binding pro 94.9 16 0.00034 46.3 60.9 244 48-370 71-316 (775)
50 PRK00106 hypothetical protein; 94.4 9.6 0.00021 46.3 23.8 36 904-944 452-487 (535)
51 KOG0964 Structural maintenance 94.2 25 0.00053 45.6 33.9 116 351-468 170-298 (1200)
52 KOG0977 Nuclear envelope prote 93.9 20 0.00044 43.8 30.2 125 130-282 68-196 (546)
53 KOG1029 Endocytic adaptor prot 93.8 26 0.00056 44.6 29.8 119 476-614 316-434 (1118)
54 PF00038 Filament: Intermediat 93.1 16 0.00035 40.0 35.1 70 656-729 235-304 (312)
55 PF13851 GAS: Growth-arrest sp 92.2 18 0.0004 38.6 20.1 143 517-676 22-168 (201)
56 COG1340 Uncharacterized archae 92.2 25 0.00055 40.2 30.3 53 431-483 30-82 (294)
57 PF12072 DUF3552: Domain of un 92.2 4 8.6E-05 43.1 14.4 59 411-469 72-130 (201)
58 KOG0996 Structural maintenance 91.9 55 0.0012 43.4 41.2 223 508-764 384-611 (1293)
59 KOG4643 Uncharacterized coiled 91.9 51 0.0011 43.0 41.0 226 529-764 315-558 (1195)
60 KOG0612 Rho-associated, coiled 91.6 60 0.0013 43.1 40.4 199 353-556 432-636 (1317)
61 TIGR03185 DNA_S_dndD DNA sulfu 91.0 46 0.001 40.8 31.6 68 482-550 184-251 (650)
62 PRK12705 hypothetical protein; 90.2 28 0.0006 42.3 20.4 59 395-460 62-120 (508)
63 PF05701 WEMBL: Weak chloropla 89.6 56 0.0012 39.5 49.1 370 343-765 29-408 (522)
64 PF05557 MAD: Mitotic checkpoi 89.5 2.4 5.3E-05 52.0 11.4 22 656-677 618-639 (722)
65 KOG0996 Structural maintenance 89.4 88 0.0019 41.6 41.0 259 348-618 341-612 (1293)
66 smart00787 Spc7 Spc7 kinetocho 87.8 57 0.0012 37.3 22.0 167 433-605 121-287 (312)
67 PF05701 WEMBL: Weak chloropla 87.6 74 0.0016 38.4 47.4 58 460-517 282-339 (522)
68 PRK04863 mukB cell division pr 86.2 1.5E+02 0.0033 40.6 39.6 41 876-922 756-798 (1486)
69 PF08317 Spc7: Spc7 kinetochor 86.0 62 0.0013 36.7 18.7 35 529-563 230-264 (325)
70 PRK09039 hypothetical protein; 85.6 29 0.00063 39.8 16.1 103 116-222 65-167 (343)
71 PF10473 CENP-F_leu_zip: Leuci 85.1 31 0.00068 35.6 14.5 101 163-263 2-116 (140)
72 PF05667 DUF812: Protein of un 84.4 1.2E+02 0.0025 37.8 24.4 53 474-526 492-544 (594)
73 TIGR03185 DNA_S_dndD DNA sulfu 83.6 1.2E+02 0.0026 37.3 36.3 35 543-577 255-289 (650)
74 PF05557 MAD: Mitotic checkpoi 82.7 1.6 3.5E-05 53.5 5.1 29 257-285 180-208 (722)
75 PF13863 DUF4200: Domain of un 80.7 42 0.0009 32.4 12.8 89 401-499 12-100 (126)
76 PF05262 Borrelia_P83: Borreli 80.6 80 0.0017 38.5 17.6 70 442-511 189-258 (489)
77 PF09726 Macoilin: Transmembra 79.9 1.8E+02 0.0039 36.9 23.8 54 394-455 543-597 (697)
78 PF12718 Tropomyosin_1: Tropom 78.6 83 0.0018 32.3 14.7 117 186-302 15-137 (143)
79 PF09755 DUF2046: Uncharacteri 78.4 1.4E+02 0.003 34.7 20.5 29 607-635 113-141 (310)
80 PF06818 Fez1: Fez1; InterPro 78.0 72 0.0016 35.0 14.7 130 481-632 32-170 (202)
81 TIGR01843 type_I_hlyD type I s 78.0 1.2E+02 0.0027 33.9 20.6 53 2-65 47-102 (423)
82 PF05622 HOOK: HOOK protein; 76.3 0.83 1.8E-05 55.8 0.0 60 517-576 458-521 (713)
83 KOG0977 Nuclear envelope prote 76.0 2.1E+02 0.0046 35.6 35.5 276 390-723 90-378 (546)
84 PF09755 DUF2046: Uncharacteri 75.2 1.7E+02 0.0037 34.1 24.1 163 540-709 31-200 (310)
85 PF00769 ERM: Ezrin/radixin/mo 75.0 98 0.0021 34.2 15.1 79 480-558 12-90 (246)
86 KOG0994 Extracellular matrix g 75.0 3.2E+02 0.0069 37.1 33.5 60 82-145 1422-1481(1758)
87 PF10473 CENP-F_leu_zip: Leuci 74.6 1.1E+02 0.0024 31.7 18.3 87 505-591 7-93 (140)
88 PF04111 APG6: Autophagy prote 72.4 57 0.0012 37.1 13.0 16 722-737 166-181 (314)
89 PRK12705 hypothetical protein; 71.6 2.5E+02 0.0055 34.5 21.0 61 386-450 64-124 (508)
90 KOG0612 Rho-associated, coiled 71.3 3.8E+02 0.0082 36.4 53.0 28 723-751 1016-1043(1317)
91 KOG0962 DNA repair protein RAD 70.1 4.1E+02 0.0089 36.3 57.6 88 537-624 834-927 (1294)
92 KOG0976 Rho/Rac1-interacting s 70.0 3.5E+02 0.0076 35.4 44.9 111 344-456 95-208 (1265)
93 KOG0994 Extracellular matrix g 69.5 4.1E+02 0.009 36.1 32.3 211 222-468 1520-1740(1758)
94 TIGR01005 eps_transp_fam exopo 69.5 3E+02 0.0064 34.4 19.5 43 147-189 184-226 (754)
95 COG1340 Uncharacterized archae 69.4 2.2E+02 0.0048 33.0 28.8 25 652-676 132-156 (294)
96 PF00769 ERM: Ezrin/radixin/mo 68.8 1.3E+02 0.0028 33.3 14.3 123 162-284 3-125 (246)
97 PF11559 ADIP: Afadin- and alp 68.7 1.4E+02 0.0029 30.2 14.5 73 436-511 74-146 (151)
98 PF04111 APG6: Autophagy prote 68.1 75 0.0016 36.2 12.7 34 516-549 100-133 (314)
99 KOG0804 Cytoplasmic Zn-finger 66.9 1.5E+02 0.0032 36.1 15.0 109 529-660 347-455 (493)
100 TIGR03007 pepcterm_ChnLen poly 65.9 2.6E+02 0.0057 32.9 16.9 62 49-121 173-235 (498)
101 TIGR02977 phageshock_pspA phag 65.5 2E+02 0.0043 31.0 17.2 167 26-198 2-201 (219)
102 PF12126 DUF3583: Protein of u 63.6 2.2E+02 0.0047 33.3 14.9 121 485-616 4-124 (324)
103 PF10146 zf-C4H2: Zinc finger- 63.5 1.9E+02 0.0041 32.1 14.2 77 665-749 4-80 (230)
104 COG4026 Uncharacterized protei 63.4 68 0.0015 36.0 10.8 83 517-603 118-205 (290)
105 PRK04778 septation ring format 61.9 3.8E+02 0.0081 32.9 44.1 222 496-761 284-518 (569)
106 COG1579 Zn-ribbon protein, pos 61.8 2.7E+02 0.006 31.3 20.0 46 402-447 37-82 (239)
107 PF10146 zf-C4H2: Zinc finger- 61.4 1.9E+02 0.0041 32.2 13.8 95 510-604 3-103 (230)
108 PRK09039 hypothetical protein; 61.3 3.1E+02 0.0068 31.8 21.1 51 502-552 117-167 (343)
109 COG1579 Zn-ribbon protein, pos 60.0 3E+02 0.0064 31.1 22.8 90 542-635 95-184 (239)
110 PF09325 Vps5: Vps5 C terminal 59.1 2.3E+02 0.0051 29.6 16.3 65 170-237 162-235 (236)
111 COG2433 Uncharacterized conser 59.0 1.4E+02 0.0031 37.4 13.4 68 506-577 427-494 (652)
112 PLN03188 kinesin-12 family pro 57.9 4.6E+02 0.0099 35.8 18.2 152 110-287 1078-1250(1320)
113 PRK10698 phage shock protein P 55.2 3.2E+02 0.0069 29.9 16.9 121 26-146 2-134 (222)
114 PF07926 TPR_MLP1_2: TPR/MLP1/ 53.6 2.5E+02 0.0053 28.2 16.7 96 480-578 17-112 (132)
115 KOG0933 Structural maintenance 53.5 7.1E+02 0.015 33.5 64.2 200 92-293 241-472 (1174)
116 TIGR03007 pepcterm_ChnLen poly 52.6 4.5E+02 0.0098 31.0 18.2 37 151-187 155-191 (498)
117 PF05483 SCP-1: Synaptonemal c 52.1 6.4E+02 0.014 32.6 67.4 51 525-575 516-566 (786)
118 TIGR01000 bacteriocin_acc bact 48.1 5.3E+02 0.012 30.5 16.5 16 46-61 106-121 (457)
119 PF09789 DUF2353: Uncharacteri 47.9 5.2E+02 0.011 30.3 23.1 206 473-694 2-228 (319)
120 PRK06800 fliH flagellar assemb 47.5 59 0.0013 35.6 7.1 50 713-762 36-85 (228)
121 PF03904 DUF334: Domain of unk 47.1 4.7E+02 0.01 29.6 14.7 111 529-645 43-154 (230)
122 PF10186 Atg14: UV radiation r 46.4 4.1E+02 0.0088 28.6 16.3 9 134-142 22-30 (302)
123 PTZ00266 NIMA-related protein 45.5 2.2E+02 0.0048 37.7 12.9 15 70-84 91-105 (1021)
124 PF03962 Mnd1: Mnd1 family; I 44.5 3.5E+02 0.0076 29.0 12.2 35 485-519 67-101 (188)
125 TIGR01069 mutS2 MutS2 family p 44.5 3.9E+02 0.0084 34.3 14.5 74 465-547 517-590 (771)
126 PF12329 TMF_DNA_bd: TATA elem 44.4 2.1E+02 0.0045 26.6 9.2 67 489-565 3-69 (74)
127 PF11932 DUF3450: Protein of u 44.2 4.6E+02 0.01 28.7 13.5 55 540-594 60-114 (251)
128 PF14662 CCDC155: Coiled-coil 43.6 4.9E+02 0.011 28.8 19.3 167 126-292 9-188 (193)
129 PF03962 Mnd1: Mnd1 family; I 43.5 3.5E+02 0.0077 29.0 12.0 95 525-620 72-166 (188)
130 KOG1103 Predicted coiled-coil 43.5 6.6E+02 0.014 30.2 16.2 17 856-872 421-437 (561)
131 PF04012 PspA_IM30: PspA/IM30 43.4 4.3E+02 0.0093 28.1 15.9 117 27-143 2-130 (221)
132 PF09787 Golgin_A5: Golgin sub 43.3 6.9E+02 0.015 30.4 28.5 18 705-722 410-427 (511)
133 KOG0995 Centromere-associated 42.7 8.1E+02 0.018 31.0 40.7 99 473-585 259-360 (581)
134 PF07106 TBPIP: Tat binding pr 41.9 2.7E+02 0.0058 28.7 10.6 32 480-511 72-103 (169)
135 PRK07353 F0F1 ATP synthase sub 41.4 2.7E+02 0.0058 27.5 10.1 17 312-328 13-29 (140)
136 PF10186 Atg14: UV radiation r 41.2 4.9E+02 0.011 28.0 16.6 11 527-537 138-148 (302)
137 PF04871 Uso1_p115_C: Uso1 / p 41.1 4.2E+02 0.009 27.2 14.3 37 509-545 78-114 (136)
138 KOG0804 Cytoplasmic Zn-finger 40.4 6.8E+02 0.015 30.9 14.7 75 426-503 373-447 (493)
139 KOG4643 Uncharacterized coiled 39.7 1.1E+03 0.024 31.9 48.1 86 478-563 465-550 (1195)
140 PF15066 CAGE1: Cancer-associa 39.6 8.4E+02 0.018 30.3 21.6 107 478-601 384-490 (527)
141 TIGR01069 mutS2 MutS2 family p 39.6 5.3E+02 0.011 33.2 14.6 60 483-545 507-566 (771)
142 PRK00409 recombination and DNA 39.4 5.4E+02 0.012 33.1 14.7 34 141-174 142-175 (782)
143 KOG4661 Hsp27-ERE-TATA-binding 39.2 3.8E+02 0.0083 33.9 12.6 13 329-341 450-462 (940)
144 KOG3200 Uncharacterized conser 38.8 39 0.00084 36.8 4.2 55 845-899 69-159 (224)
145 PF09728 Taxilin: Myosin-like 38.7 6.7E+02 0.014 28.9 36.4 65 680-744 230-308 (309)
146 TIGR01005 eps_transp_fam exopo 38.7 9E+02 0.019 30.4 20.5 38 250-287 364-401 (754)
147 PRK15422 septal ring assembly 37.3 2.1E+02 0.0046 27.7 8.2 56 501-556 11-66 (79)
148 PF02841 GBP_C: Guanylate-bind 37.2 6.4E+02 0.014 28.3 15.5 9 126-134 41-49 (297)
149 PF14992 TMCO5: TMCO5 family 37.1 7.2E+02 0.016 28.9 13.9 93 345-454 4-100 (280)
150 TIGR01010 BexC_CtrB_KpsE polys 37.1 4.6E+02 0.0099 29.9 12.4 139 155-299 168-315 (362)
151 PF12718 Tropomyosin_1: Tropom 36.9 4.9E+02 0.011 26.8 16.5 118 160-281 10-134 (143)
152 PRK00409 recombination and DNA 36.8 4.9E+02 0.011 33.5 13.8 28 67-94 26-53 (782)
153 PTZ00266 NIMA-related protein 36.4 3.6E+02 0.0078 35.9 12.7 7 325-331 236-242 (1021)
154 PF05262 Borrelia_P83: Borreli 35.8 9.4E+02 0.02 29.8 16.6 18 344-361 195-212 (489)
155 PF15070 GOLGA2L5: Putative go 35.5 1E+03 0.022 30.2 36.3 428 159-634 24-493 (617)
156 KOG1962 B-cell receptor-associ 34.8 2.8E+02 0.0061 30.9 9.9 57 541-608 156-212 (216)
157 COG4942 Membrane-bound metallo 34.3 9.5E+02 0.021 29.4 29.5 88 468-558 159-246 (420)
158 cd07647 F-BAR_PSTPIP The F-BAR 34.1 6.5E+02 0.014 27.4 18.2 48 597-645 168-215 (239)
159 PF06428 Sec2p: GDP/GTP exchan 34.1 98 0.0021 30.5 5.8 68 119-189 2-69 (100)
160 CHL00118 atpG ATP synthase CF0 32.7 4E+02 0.0087 27.2 10.1 95 312-412 30-145 (156)
161 COG4372 Uncharacterized protei 32.3 1E+03 0.022 29.2 22.8 21 286-306 234-254 (499)
162 smart00806 AIP3 Actin interact 31.9 1E+03 0.023 29.1 15.4 138 132-278 155-319 (426)
163 PRK11281 hypothetical protein; 31.5 1.5E+03 0.032 30.8 27.5 55 218-272 126-180 (1113)
164 COG3883 Uncharacterized protei 31.5 8.6E+02 0.019 28.0 24.6 119 394-512 64-204 (265)
165 PF11068 YlqD: YlqD protein; 30.4 5.5E+02 0.012 26.5 10.5 73 678-766 18-90 (131)
166 PRK15422 septal ring assembly 30.2 5.2E+02 0.011 25.2 9.5 58 520-581 6-63 (79)
167 PRK10884 SH3 domain-containing 30.2 5.4E+02 0.012 28.2 11.0 23 527-549 144-166 (206)
168 PF09744 Jnk-SapK_ap_N: JNK_SA 30.0 7E+02 0.015 26.5 12.6 67 423-495 84-157 (158)
169 KOG0995 Centromere-associated 29.9 1.3E+03 0.027 29.5 42.1 86 465-561 293-378 (581)
170 PF10234 Cluap1: Clusterin-ass 29.7 4.4E+02 0.0094 30.2 10.6 96 450-548 156-258 (267)
171 PF09789 DUF2353: Uncharacteri 28.9 1E+03 0.022 28.1 26.0 40 730-769 190-229 (319)
172 smart00502 BBC B-Box C-termina 28.4 4.8E+02 0.01 24.2 11.3 45 622-666 43-87 (127)
173 KOG3859 Septins (P-loop GTPase 28.0 5.4E+02 0.012 30.4 11.0 52 433-487 350-401 (406)
174 PRK10884 SH3 domain-containing 27.7 4.1E+02 0.0088 29.1 9.6 52 241-292 118-169 (206)
175 PF06476 DUF1090: Protein of u 27.0 2.3E+02 0.0049 28.5 7.1 23 127-149 45-67 (115)
176 PRK11519 tyrosine kinase; Prov 26.9 1.1E+03 0.023 29.9 14.3 45 145-189 255-299 (719)
177 COG4942 Membrane-bound metallo 26.2 1.3E+03 0.028 28.3 28.9 39 535-573 160-198 (420)
178 PF15254 CCDC14: Coiled-coil d 26.1 1.3E+03 0.028 30.5 14.4 99 548-653 439-537 (861)
179 PF10212 TTKRSYEDQ: Predicted 25.6 6.3E+02 0.014 31.5 11.6 103 193-298 403-505 (518)
180 KOG0249 LAR-interacting protei 25.6 1.7E+03 0.036 29.5 16.6 62 401-462 96-159 (916)
181 PF08614 ATG16: Autophagy prot 24.7 6.3E+02 0.014 26.8 10.2 74 216-289 70-143 (194)
182 COG1842 PspA Phage shock prote 24.1 1E+03 0.022 26.5 12.7 105 130-247 29-133 (225)
183 PRK10246 exonuclease subunit S 24.1 1.8E+03 0.039 29.4 72.1 55 107-163 164-229 (1047)
184 PF04880 NUDE_C: NUDE protein, 23.8 95 0.0021 33.1 4.0 18 532-549 27-44 (166)
185 PF06103 DUF948: Bacterial pro 23.6 2.7E+02 0.0058 25.9 6.5 54 124-177 25-78 (90)
186 PF13334 DUF4094: Domain of un 23.0 68 0.0015 31.2 2.6 82 312-399 5-94 (95)
187 PF09730 BicD: Microtubule-ass 22.9 1.8E+03 0.038 28.9 17.2 124 475-611 53-181 (717)
188 TIGR03545 conserved hypothetic 22.2 5.8E+02 0.013 31.8 10.6 26 472-497 225-250 (555)
189 PF05529 Bap31: B-cell recepto 22.1 5E+02 0.011 27.2 8.8 35 525-559 157-191 (192)
190 TIGR03017 EpsF chain length de 21.9 1.3E+03 0.028 26.8 19.0 44 146-189 160-203 (444)
191 smart00787 Spc7 Spc7 kinetocho 21.8 1.3E+03 0.028 26.8 18.3 35 478-512 202-236 (312)
192 KOG1003 Actin filament-coating 21.7 1.2E+03 0.025 26.3 22.3 119 345-497 85-203 (205)
193 PF09731 Mitofilin: Mitochondr 21.6 1.5E+03 0.033 27.6 26.6 13 753-765 430-442 (582)
194 PF10498 IFT57: Intra-flagella 21.3 1.3E+03 0.027 27.5 12.6 100 395-497 226-325 (359)
195 COG3074 Uncharacterized protei 21.1 7.6E+02 0.016 23.9 9.4 64 521-606 7-70 (79)
196 PF10498 IFT57: Intra-flagella 20.5 9.9E+02 0.022 28.3 11.6 99 152-281 222-320 (359)
197 PF11802 CENP-K: Centromere-as 20.4 8.9E+02 0.019 28.0 10.7 78 65-142 52-141 (268)
198 TIGR03545 conserved hypothetic 20.2 6.2E+02 0.013 31.5 10.3 37 519-555 220-256 (555)
199 PF04568 IATP: Mitochondrial A 20.1 3.5E+02 0.0076 27.0 6.7 44 666-709 53-98 (100)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=99.42 E-value=1.9e-06 Score=103.55 Aligned_cols=52 Identities=29% Similarity=0.374 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhHH-----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001119 524 EIKLKEELDVVRAQKLELMV-----ETDKLQLEKAKFEAEWEMIDEKREELRKEAER 575 (1150)
Q Consensus 524 Q~eLKeEId~~R~Qke~Llk-----Eae~Lk~EKekFE~EWE~LDEKR~el~KEa~~ 575 (1150)
..+++++|...|.+...|.. ..+.|.....+.+..-+.+..+..+++.+...
T Consensus 622 ~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~ 678 (880)
T PRK02224 622 NDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDD 678 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888887777743 23344444444444444444444333333333
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.35 E-value=1.8e-05 Score=102.61 Aligned_cols=562 Identities=21% Similarity=0.255 Sum_probs=307.1
Q ss_pred hhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhc
Q 001119 149 DSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQS 228 (1150)
Q Consensus 149 esKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~ 228 (1150)
+..|.+...=+...+++...++.+...++...- ++...+.++|.--..++++.-.........+.++..+++.
T Consensus 907 e~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~-------~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~ 979 (1930)
T KOG0161|consen 907 EKELKELKERLEEEEEKNAELERKKRKLEQEVQ-------ELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDEN 979 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555554442222 2223333333333344444444444455555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHHhhhhhhhhhhHHHhhhhhhhhhc
Q 001119 229 LSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEVYTI 308 (1150)
Q Consensus 229 L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~L~~ke~dl~~rl~~L~~rEee~t~ 308 (1150)
+..--|.=...++++-+.+.-|...++.++.-.+...+.+-.|++....++.+.....+-+.....-...|...-..+
T Consensus 980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~-- 1057 (1930)
T KOG0161|consen 980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESI-- 1057 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--
Confidence 555555445567777778888888888888888888888888888888887777666665522222222221111111
Q ss_pred cccchhhhhHHhhhhccccccccccCchhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhhh--hHHHHHHHHH--------
Q 001119 309 SFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQETLASKE--SNEIQKIIAN-------- 378 (1150)
Q Consensus 309 ~~~~~~l~~~~~~~h~l~~~~~~~~~~~~d~~~~~~~~e~~Le~KEkeLl~leEKL~aRE--~~EIQKLlde-------- 378 (1150)
-+...-+......|.++|-+|..++.++..-. ....||.+.+
T Consensus 1058 ----------------------------~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el 1109 (1930)
T KOG0161|consen 1058 ----------------------------EELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKEL 1109 (1930)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222235666778888888888887775433 2233333332
Q ss_pred ---------hHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHH---HhhhhhhhhhHHHHHhhhhhHHHhHHHHH----H
Q 001119 379 ---------HESALRVKQSEFEAELAIKYKLAEDEIEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----D 442 (1150)
Q Consensus 379 ---------h~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----E 442 (1150)
..+.++..++++..+++....-+++-......-. .++|.++..+-..+.+.....+.+...+. +
T Consensus 1110 ~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~ 1189 (1930)
T KOG0161|consen 1110 EEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHAD 1189 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2344555566666666666665555533332222 24555555554444444444444443333 2
Q ss_pred hhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 001119 443 KEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV 522 (1150)
Q Consensus 443 KEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~ 522 (1150)
.=.++.+-+..++.....+......++.+-..|..+-..+...+.++++..-.++ .++.+.+.++.-+..-++++..
T Consensus 1190 ~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~ 1266 (1930)
T KOG0161|consen 1190 SLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTA 1266 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 2234445555555555555555555666666666666666666666666665555 4556666666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 001119 523 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMR 602 (1150)
Q Consensus 523 LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mr 602 (1150)
-.++|..|+..+=.|.++....+..+-..+..|+.+-+.+ +.++ ...+..+-.+..-+ -++..+.+.++
T Consensus 1267 q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~ql----e~e~r~k~~l~~~l----~~l~~e~~~l~ 1335 (1930)
T KOG0161|consen 1267 KRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQL----EEETREKSALENAL----RQLEHELDLLR 1335 (1930)
T ss_pred HHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 7888888888888888888888888888888888776666 3333 33334444444333 24555677777
Q ss_pred HHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH----------------
Q 001119 603 DQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS---------------- 666 (1150)
Q Consensus 603 d~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEE~E~~---------------- 666 (1150)
.+|.-+.+....-.-. ..+-.-+=+.|-.|++....+-+-+++.-|+.|...++..++.+|-.
T Consensus 1336 e~leee~e~~~~l~r~-lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~ 1414 (1930)
T KOG0161|consen 1336 EQLEEEQEAKNELERK-LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQ 1414 (1930)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777666665421100 11122233445555555555555555555555555555444444322
Q ss_pred ------------------HHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHH
Q 001119 667 ------------------FREREKAFEE---EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWA 725 (1150)
Q Consensus 667 ------------------L~EREk~FEe---ek~~EL~~IN~lKE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~a 725 (1150)
|...-+.|+. +-.+-...+....+.+.++..+...+..++...=.+.....+.+.++-.
T Consensus 1415 el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk 1494 (1930)
T KOG0161|consen 1415 ELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENK 1494 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233321 1122334445555566666666666666666655555555555555555
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001119 726 ELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERL 762 (1150)
Q Consensus 726 Em~kdIeeL~~ls~KLk~QREll~~ERe~f~~~vEkl 762 (1150)
.|...|.+|..+-.-+......+...+..+-..++.+
T Consensus 1495 ~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~el 1531 (1930)
T KOG0161|consen 1495 NLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEEL 1531 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555554444433
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.18 E-value=5.7e-05 Score=91.20 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=67.3
Q ss_pred HHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhch
Q 001119 108 EARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYH 187 (1150)
Q Consensus 108 EaeKREEnLkKALGvEKqCVadLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~ 187 (1150)
....|.+=+.+.+|+.. +-.+...+.+.+..+..++-...+.+......+.. ....+++..|..+...++++....
T Consensus 147 ~p~~R~~ii~~l~~l~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i 222 (880)
T PRK02224 147 TPSDRQDMIDDLLQLGK--LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEI 222 (880)
T ss_pred CHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688889999999833 35677788888888888888888888888887766 234556677777777777777666
Q ss_pred hHHhhhHHHHhhhhhHHH
Q 001119 188 RSAERKLQEVVAREDDLS 205 (1150)
Q Consensus 188 s~aeRKL~eVEaRE~~Lr 205 (1150)
+.+...+..+...-..|.
T Consensus 223 ~~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 223 ERYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666665555444443
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=0.00011 Score=93.25 Aligned_cols=70 Identities=7% Similarity=0.021 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhh
Q 001119 130 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVA 199 (1150)
Q Consensus 130 LEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEa 199 (1150)
|.+.+++...+....+-..+..+..+..-+..+..+....+..+..+........+....+.++|..+..
T Consensus 399 ~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~ 468 (1311)
T TIGR00606 399 VIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG 468 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4444555555555544444455555555555555444444444444444444444444444444444333
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.99 E-value=0.00033 Score=84.91 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=14.5
Q ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 001119 715 MDRQRRDREWAELNNSIEELMVQRQKLEE 743 (1150)
Q Consensus 715 ~~ke~le~e~aEm~kdIeeL~~ls~KLk~ 743 (1150)
..-..+..+..++...++.|...-.++.+
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~ 1021 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEE 1021 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555554444
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=0.00061 Score=86.85 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=38.3
Q ss_pred HHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 001119 170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (1150)
Q Consensus 170 E~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q 247 (1150)
...+.+....+..++.....+++.+..++..-..++++.-....+..+....|. +=....+.+..|.+.++.+-..+
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555555555555555 11244455555555555555555
No 7
>PRK03918 chromosome segregation protein; Provisional
Probab=98.80 E-value=0.0013 Score=79.42 Aligned_cols=41 Identities=7% Similarity=0.165 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhh
Q 001119 212 KADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE 252 (1150)
Q Consensus 212 ~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNq 252 (1150)
..+....+..+......+.+|+..+.+.+..+...+.++.+
T Consensus 244 ~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~ 284 (880)
T PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE 284 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445444455666666666666666665555544
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.63 E-value=0.0044 Score=75.55 Aligned_cols=9 Identities=11% Similarity=-0.226 Sum_probs=3.6
Q ss_pred CCCCccccC
Q 001119 857 SGENSVEND 865 (1150)
Q Consensus 857 SP~Kk~~~~ 865 (1150)
+|.+=...+
T Consensus 1110 ~~~~~~~lD 1118 (1179)
T TIGR02168 1110 KPAPFCILD 1118 (1179)
T ss_pred CCCCeEEec
Confidence 454333333
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.62 E-value=0.0049 Score=75.61 Aligned_cols=43 Identities=33% Similarity=0.469 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 001119 527 LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREEL 569 (1150)
Q Consensus 527 LKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el 569 (1150)
|++++..++.+...+..+...+..++...+.+=+.|....+++
T Consensus 803 l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l 845 (1164)
T TIGR02169 803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333333333333
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.60 E-value=0.0072 Score=76.62 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=34.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHh
Q 001119 679 MREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNN 729 (1150)
Q Consensus 679 ~~EL~~IN~lKE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~k 729 (1150)
-..|..+| -.|--+++++.-....|..+++.+...+..+..-+.+|.+
T Consensus 958 i~~lg~VN---~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~ 1005 (1163)
T COG1196 958 IEALGPVN---LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDK 1005 (1163)
T ss_pred HHhccCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788 4566778888888888888777777777777666655543
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=98.58 E-value=0.0054 Score=74.27 Aligned_cols=16 Identities=19% Similarity=0.136 Sum_probs=10.0
Q ss_pred cCCCCcHHHHHHHHHc
Q 001119 19 QSPLSDESIWKRLKEA 34 (1150)
Q Consensus 19 ~~~~~d~~iWkr~~ea 34 (1150)
.+++|-..+...+.=|
T Consensus 31 ~nG~GKStil~ai~~~ 46 (880)
T PRK03918 31 QNGSGKSSILEAILVG 46 (880)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4566777777665543
No 12
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.58 E-value=0.0086 Score=76.30 Aligned_cols=207 Identities=14% Similarity=0.274 Sum_probs=145.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 001119 516 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR 595 (1150)
Q Consensus 516 ER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK 595 (1150)
++.+|......|.++++.+..+...+.+..+.+..+.....+.-+.+...-+..+-+.+........+..-......++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46688889999999999999999999998888888888888888888887777777777776666666666666677777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001119 596 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE 675 (1150)
Q Consensus 596 ~Ek~~mrd~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEE~E~~L~EREk~FE 675 (1150)
..+..-+..+...+..+..+-..| ..|+..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~----~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQL----KQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776665554 3445556666666666555555555666666666666666666665555554
Q ss_pred H-------HHHHHhhh--hhh-HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHH
Q 001119 676 E-------EKMREFQQ--ISS-LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 726 (1150)
Q Consensus 676 e-------ek~~EL~~--IN~-lKE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aE 726 (1150)
+ ....+|.. |+- .-..++++++++..++.+++.-|..|..=+.=+...|..
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4 33344432 121 445567888888899999998888887766666666654
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.55 E-value=0.014 Score=77.25 Aligned_cols=235 Identities=23% Similarity=0.249 Sum_probs=120.3
Q ss_pred CChHHHhhhcHH--HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 001119 36 LDEVSIKRRDKA--ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE 113 (1150)
Q Consensus 36 ~De~s~~rrD~~--aLia~IskLE~ElfdyQynMGLLLiEkKEw~SK~eqlk~a~~eae~~lKREqaAhl~ALsEaeKRE 113 (1150)
-++.-|..+|.. .|-..+.+-|+..=++--+|--+..|+-.++.....=+.-.++|++++.|..+.-.-+=.++
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l---- 910 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKEL---- 910 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 355666665543 34455666677777888888888888888888888888888888888888877654331111
Q ss_pred HhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhh-----------------hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001119 114 ESLKKTLGVEKECIASLEKAVHEIRAESAETK-----------------VAADSKFAEARCMVENAQKKFAEAEAKLHAA 176 (1150)
Q Consensus 114 EnLkKALGvEKqCVadLEKAL~EmR~E~AeiK-----------------~tsesKLaEA~aLv~~~eeKslEvE~KL~aA 176 (1150)
..+..-+..+.+=.++|++-.+++..++.+.+ .+.+.++-....=+.+ ..+..+||-.+
T Consensus 911 ~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~----~~e~~~kL~ke 986 (1930)
T KOG0161|consen 911 KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS----LDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 11222222222223334444444444433332 2222222222221211 22233333333
Q ss_pred HHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhhhHh
Q 001119 177 ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDH 256 (1150)
Q Consensus 177 eaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqREe~ 256 (1150)
...+-+++| .+.-.|+.-+..-..|.+-...+.+..+..+.++.+++....+.+|.....+-.|...|..+..-...
T Consensus 987 kk~lEe~~~---~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~ 1063 (1930)
T KOG0161|consen 987 KKELEERIR---ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQ 1063 (1930)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333222222 22233444444444555555555555555555566666555666655555555555555544444444
Q ss_pred hHhhHHHHhHhHHHHHHHHhcHHHH
Q 001119 257 ILSKLQELSRKEKELEASRANVEEK 281 (1150)
Q Consensus 257 i~E~~~~l~~kEkeLEeakkkie~~ 281 (1150)
+-+-+..++.++-+|-..+.+++..
T Consensus 1064 ~~el~~~l~kke~El~~l~~k~e~e 1088 (1930)
T KOG0161|consen 1064 KEELDNQLKKKESELSQLQSKLEDE 1088 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4455555555555555555555443
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.54 E-value=0.0076 Score=74.00 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHH
Q 001119 45 DKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAEL 93 (1150)
Q Consensus 45 D~~aLia~IskLE~ElfdyQynMGLLLiEkKEw~SK~eqlk~a~~eae~ 93 (1150)
+...+...+..++.++..++-.+.-+--+-.++..++..+...+...+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 279 (1164)
T TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666655544444555555555555544433
No 15
>PRK01156 chromosome segregation protein; Provisional
Probab=98.52 E-value=0.0085 Score=73.36 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001119 690 EKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL 747 (1150)
Q Consensus 690 E~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QREl 747 (1150)
.....++..+..+..++..+...+..+...+.....++..+|+.|..--.++.++...
T Consensus 670 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~ 727 (895)
T PRK01156 670 KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445566666666677777777777777777777777776666655444444444433
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.43 E-value=0.018 Score=73.16 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHH---HhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhH
Q 001119 54 AKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELL---QKHDRASHLSAIAEARKREESLKKTLGVEKECIASL 130 (1150)
Q Consensus 54 skLE~ElfdyQynMGLLLiEkKEw~SK~eqlk~a~~eae~~---lKREqaAhl~ALsEaeKREEnLkKALGvEKqCVadL 130 (1150)
-.|.+++..+++- +++.+-..+..+++++...+...+.- +......+.-.+...+.+-+.+++.+..-.++...+
T Consensus 216 ~~l~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~ 293 (1163)
T COG1196 216 QELKAELRELELA--LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293 (1163)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666664 45556667777777777777766633 334444455556666666667776666666676666
Q ss_pred HHHHHHHHhhhhhhhhhhh
Q 001119 131 EKAVHEIRAESAETKVAAD 149 (1150)
Q Consensus 131 EKAL~EmR~E~AeiK~tse 149 (1150)
...+.++-.+.+.++-..+
T Consensus 294 ~~~~~~le~~~~~~~~~~~ 312 (1163)
T COG1196 294 KEEIEELEGEISLLRERLE 312 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666665554433
No 17
>PRK01156 chromosome segregation protein; Provisional
Probab=98.38 E-value=0.018 Score=70.72 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=32.0
Q ss_pred HHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 001119 711 MEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKL 765 (1150)
Q Consensus 711 ~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QREll~~ERe~f~~~vEklK~c 765 (1150)
..+......+..+...++.+|..|...-..++++-+.+..+...+..+++.++.+
T Consensus 677 ~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~ 731 (895)
T PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKI 731 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666676666666666665555555555555555555544
No 18
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.016 Score=70.75 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=124.8
Q ss_pred hhhhhhHH---HHHHHHhhhHHHHHHHHHHHHHhhhhh---hhhhH--HHHHhhhhhHHHhHHHHHHhhhhHH-HHhhhh
Q 001119 384 RVKQSEFE---AELAIKYKLAEDEIEKKRRAWELRDLD---LGQRE--ESLLEREHDLEVQSRALVDKEKDLV-ERSHLL 454 (1150)
Q Consensus 384 ~~Kk~EFE---lElE~krKs~eeEle~K~~~~E~rEve---l~h~E--ekl~kREqaLe~k~~~lkEKEkdL~-~Ksk~L 454 (1150)
|.|+-.|+ +||+..|+-+++.-...+..++++|.+ -+.+| ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555 677777877777766666666665543 22233 3334455667777777666654332 233333
Q ss_pred HHHHhhhHHHHHHh--HHH-------HHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 001119 455 EEKENKLIAFEKEA--DLK-------KSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV 522 (1150)
Q Consensus 455 KEkEksL~aeEK~l--e~e-------K~~L~~eKEel~~lK---~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~ 522 (1150)
..+|-.-.-.||.- +-+ .+|...+.+.+-.++ ..++--+..|..+++++..--....+-.
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~-------- 467 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI-------- 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc--------
Confidence 33333322222211 111 112222333333222 2333344444445555444433332222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------hh
Q 001119 523 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL-------------KD 589 (1150)
Q Consensus 523 LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~-------------~~ 589 (1150)
..-|++|+.++-|.+..+.|.+.|+++.. |++.-+.+++-||..|..-+ ++
T Consensus 468 --tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 468 --TTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred --chHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 35689999999999999999999998754 34444445555555443322 56
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001119 590 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 624 (1150)
Q Consensus 590 E~erLK~Ek~~mrd~~krelEsL~~ekEsF~~kMe 624 (1150)
+.+++...|+.++.+++-.++.|.-+.+|=.+.|.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77788888899999999999999888888777666
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.82 E-value=0.2 Score=62.19 Aligned_cols=484 Identities=17% Similarity=0.225 Sum_probs=262.8
Q ss_pred HHHHHhhhhhhhhhhhhhhhHHHHHHHHHhh-hhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhh
Q 001119 134 VHEIRAESAETKVAADSKFAEARCMVENAQK-KFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFK 212 (1150)
Q Consensus 134 L~EmR~E~AeiK~tsesKLaEA~aLv~~~ee-KslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~ 212 (1150)
|+.+++|+--.+--.|.+.+++.+.+.+|.+ =|-+++.----++---|++++-.+.+...--+ --.+-
T Consensus 5 l~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e-----------~q~~~ 73 (775)
T PF10174_consen 5 LERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEE-----------NQKAQ 73 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhh-----------HHHHH
Confidence 5677888888999999999999999999976 22333222222222233333333332211111 11333
Q ss_pred hhhhHHHHHHHHHhhchHHHHHHHHHHHH----------HHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHH
Q 001119 213 ADCEEKEREIIRERQSLSDRKKILQQEHE----------RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKF 282 (1150)
Q Consensus 213 ~Erea~E~~i~~QRe~L~EweKkLqq~ee----------RL~d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~ 282 (1150)
.+..+...++ +-..+++-..-.+..... ..-...++-.+|+..+.+ +..+.+.||.++..|+.-.
T Consensus 74 ~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~E----l~~lr~~lE~~q~~~e~~q 148 (775)
T PF10174_consen 74 EEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRE----LERLRKTLEELQLRIETQQ 148 (775)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4444444444 222222211111111111 111222333344444443 3344566777777777666
Q ss_pred HHHhhhhhhhhhhHHHhhhh----hhhhhccccchhhhhHHhhhhccccccccccCchhhhhHHHHHHHHHHHHhHHHHH
Q 001119 283 KALNEEKSNLDLTLVSLLKR----EEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLL 358 (1150)
Q Consensus 283 ~~L~~ke~dl~~rl~~L~~r----Eee~t~~~~~~~l~~~~~~~h~l~~~~~~~~~~~~d~~~~~~~~e~~Le~KEkeLl 358 (1150)
.+|..-.+.|..-...|-.+ +...+ .|. .+|. -.+.--.+..++..|+.+|++..
T Consensus 149 ~~l~~~~eei~kL~e~L~~~g~~~~~~~~--------------~~~-~~~~------~~~~e~~~~~le~lle~~e~~~~ 207 (775)
T PF10174_consen 149 QTLDKADEEIEKLQEMLQSKGLSAEAEEE--------------DNE-ALRR------IREAEARIMRLESLLERKEKEHM 207 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccchhh--------------hhH-HHHH------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666555555544110 00000 000 0000 00111112567788899999987
Q ss_pred HHHHHHhh-----hhh---HHHHHHHHHhHHHHhhhhhhH-------HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001119 359 VSQETLAS-----KES---NEIQKIIANHESALRVKQSEF-------EAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE 423 (1150)
Q Consensus 359 ~leEKL~a-----RE~---~EIQKLldeh~a~L~~Kk~EF-------ElElE~krKs~eeEle~K~~~~E~rEvel~h~E 423 (1150)
.+-+.|-- ++. ..+|++|+.- +++...| |.|+...+..++---. -+.-..++++.....
T Consensus 208 ~~r~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~L~~~~~~~~~--~r~~~~k~le~~~s~ 281 (775)
T PF10174_consen 208 EAREQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYRLRSRGELSEA--DRDRLDKQLEVYKSH 281 (775)
T ss_pred hhhHHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccccccc--chHHHHHHHHHHHhh
Confidence 66443322 222 3568887754 4444555 4444444332221100 122222333333333
Q ss_pred HHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001119 424 ESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 503 (1150)
Q Consensus 424 ekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi 503 (1150)
....|-. ++.-.=.|..+.-++.+...-|....+.-.....-|+.=+..|-+--.....|.+|++-++..++....++
T Consensus 282 ~~~mK~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l 359 (775)
T PF10174_consen 282 SLAMKSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQL 359 (775)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333311 33333445566666666666676666666666777777788888888888999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHH------------H
Q 001119 504 NCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR------------K 571 (1150)
Q Consensus 504 ~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~------------K 571 (1150)
...+..+..+++|.+-+..==.+|+..+|+.=..-..|.+.+|.|...-..=+ ..|++-++.|. -
T Consensus 360 ~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd---~ql~~~k~Rl~~~~d~~~~~~~~~ 436 (775)
T PF10174_consen 360 EKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD---RQLDEEKERLSSQADSSNEDEALE 436 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccccchHHHHH
Confidence 99999999999887665544455666666666666666666555553332111 11222222222 3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhh
Q 001119 572 EAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRD 651 (1150)
Q Consensus 572 Ea~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~Emqkre 651 (1150)
.++.-..+++.+..-+...+++.-.++..--+.|++++..+...-++|-..+ ||+..-+.-++.+-+.+.-+.+-+..+
T Consensus 437 ~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-sEk~~~l~~~kee~s~l~s~~~K~~s~ 515 (775)
T PF10174_consen 437 TLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-SEKELQLEDAKEEASKLASSQEKKDSE 515 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHhhccchhhhH
Confidence 3333334444444444444444444444444677777777777777777655 677777777777777776666655544
Q ss_pred ---hHHHHHHHHHHHHhH
Q 001119 652 ---LENCIEKRREELESS 666 (1150)
Q Consensus 652 ---LE~~iqkRqEE~E~~ 666 (1150)
|+..+++.++++++-
T Consensus 516 i~~l~I~lEk~rek~~kl 533 (775)
T PF10174_consen 516 IERLEIELEKKREKHEKL 533 (775)
T ss_pred HHHHHHHHHHhhhHHHHH
Confidence 446676767666543
No 20
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.26 Score=61.39 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=30.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001119 511 EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 576 (1150)
Q Consensus 511 kitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I 576 (1150)
....++...+..+..+|+...+.++.-- ....+.++++..-..+...|..|.+.-..++......
T Consensus 555 ~~l~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 555 QQLKEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444455555555444444433 2234444444444445555555555555555544444
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.73 E-value=0.21 Score=59.81 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=39.5
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001119 721 DREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 764 (1150)
Q Consensus 721 e~e~aEm~kdIeeL~~ls~KLk~QREll~~ERe~f~~~vEklK~ 764 (1150)
.=+.+|.++.|.+|...=+-+++-.|+|..++..++..|++|..
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999998863
No 22
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.62 E-value=0.61 Score=62.12 Aligned_cols=465 Identities=18% Similarity=0.223 Sum_probs=251.5
Q ss_pred HHhhhcHHHHHHHHHHHHHHHh--------hh--hhccchhheeh-------------hhhh---hhHHHHHHHHHHHHH
Q 001119 40 SIKRRDKAALIAYIAKLETEIF--------EH--QHHMGLLILEK-------------KELA---SKYEQIKASAEAAEL 93 (1150)
Q Consensus 40 s~~rrD~~aLia~IskLE~Elf--------dy--QynMGLLLiEk-------------KEw~---SK~eqlk~a~~eae~ 93 (1150)
+-.+.+.+-|-.+++.|++.|= .. +|||..-+.+. ..++ |+..++++.+-..+.
T Consensus 861 ~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eq 940 (1822)
T KOG4674|consen 861 DSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQ 940 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888888752 11 34666555442 2333 444566777888888
Q ss_pred HHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhh
Q 001119 94 LQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL 173 (1150)
Q Consensus 94 ~lKREqaAhl~ALsEaeKREEnLkKALGvEKqCVadLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL 173 (1150)
++.+....|=-...+++.+-+++.+-+--=..=+..|++-.-.++.+++-.....+.+++.+..-+.+++.-...+....
T Consensus 941 sl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen 941 SLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 89998888888888888888877765544344456677777777777777778888888888877777765444443332
Q ss_pred hhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHH---hhchHHHHHHHHHHHHHHHHHHhhh
Q 001119 174 HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRE---RQSLSDRKKILQQEHERLLDAQTLL 250 (1150)
Q Consensus 174 ~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~Q---Re~L~EweKkLqq~eeRL~d~q~lL 250 (1150)
-.+++..+.+- .+|..++.....-..-||.++..- .+.|.....-+......+.+.....
T Consensus 1021 -------s~~~~~~~~~k----------~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~ 1083 (1822)
T KOG4674|consen 1021 -------SQANEQIEDLQ----------NDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSR 1083 (1822)
T ss_pred -------HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 22333333332 344445555555566666665432 2444455555555555555555555
Q ss_pred hhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHHhhhhhhhhhhHHHhhhhhhhhhccccchhhhhHHhhhhccccccc
Q 001119 251 NEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEVYTISFPFLFLNLVLICFHVLFTGNY 330 (1150)
Q Consensus 251 NqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~L~~ke~dl~~rl~~L~~rEee~t~~~~~~~l~~~~~~~h~l~~~~~ 330 (1150)
-++..-..+..+-...+++-|+........-..-|...-..+-..+..++..=.+...+---.++.=..=-+|+
T Consensus 1084 ~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~------ 1157 (1822)
T KOG4674|consen 1084 ESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSF------ 1157 (1822)
T ss_pred HHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHH------
Confidence 55555444444444444444443333333333334444444444444444332221111111110000000111
Q ss_pred cccCchhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhH---------
Q 001119 331 IKYDSSIECTQAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA--------- 401 (1150)
Q Consensus 331 ~~~~~~~d~~~~~~~~e~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~--------- 401 (1150)
--+|+++..-+-.+.-+|...... +-+.+.....++...|...|.++
T Consensus 1158 --------------------LR~Ekei~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e 1213 (1822)
T KOG4674|consen 1158 --------------------LRKEKEIAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDE 1213 (1822)
T ss_pred --------------------HHhHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence 124444444444444444433222 22233334444444444555544
Q ss_pred HHHHHHHHHHHH-hhhh------hhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHH-
Q 001119 402 EDEIEKKRRAWE-LRDL------DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKS- 473 (1150)
Q Consensus 402 eeEle~K~~~~E-~rEv------el~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~- 473 (1150)
..+|-.++..+. .+|- +..+-.+++ +.|..+.+++.-.=.-|..-++.|+..=....|+=+.++.+..
T Consensus 1214 ~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~ 1289 (1822)
T KOG4674|consen 1214 HKEILEKVEEVNLLRESNKVLREENEANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDR 1289 (1822)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 2222 222333333 3333334333333333333333333333333333333322221
Q ss_pred ------HH-----HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhH
Q 001119 474 ------LL-----QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELM 542 (1150)
Q Consensus 474 ------~L-----~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~Ll 542 (1150)
.| ..|+.++..++.+|......+++....|.+.... +.++|-++|..+|..-..+..+.
T Consensus 1290 wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~----------~~~~q~~~k~qld~l~~e~~~lt 1359 (1822)
T KOG4674|consen 1290 WKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKE----------LNRLQEKIKKQLDELNNEKANLT 1359 (1822)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 2357888888888888888888776666655544 44555788888888888999999
Q ss_pred HhhHHHHHHHHHHHHHHhhhHHH
Q 001119 543 VETDKLQLEKAKFEAEWEMIDEK 565 (1150)
Q Consensus 543 kEae~Lk~EKekFE~EWE~LDEK 565 (1150)
++...|+.-+-+.+.-|.-.-++
T Consensus 1360 ~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1360 KELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876665
No 23
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.44 Score=59.49 Aligned_cols=59 Identities=24% Similarity=0.289 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 001119 526 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE--MIDEKREELRKEAERVAVERVVVS 584 (1150)
Q Consensus 526 eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE--~LDEKR~el~KEa~~I~eEre~le 584 (1150)
..+++|+.+|.+...+-+-...+.......+..-. .+++...++.....++...++.+.
T Consensus 583 ~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 643 (908)
T COG0419 583 TRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLN 643 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666664444444333333333333333322 446667777777777776666665
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.34 E-value=4.7e-05 Score=93.43 Aligned_cols=509 Identities=22% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHH-------HHhhhhhH
Q 001119 105 AIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEA-------EAKLHAAE 177 (1150)
Q Consensus 105 ALsEaeKREEnLkKALGvEKqCVadLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEv-------E~KL~aAe 177 (1150)
.|-+..-|=+.|.--|.-|++--+--||+-++|..|..+++---+.......+.++-.-++-.|+ |.--.+-+
T Consensus 40 ~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e 119 (859)
T PF01576_consen 40 KIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHE 119 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666677777766667777778877777777555544444444433333332221 22233456
Q ss_pred HHHHHHhhchhHHhhhHH----HHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhh
Q 001119 178 SLQAEANRYHRSAERKLQ----EVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNER 253 (1150)
Q Consensus 178 aklAEa~Rk~s~aeRKL~----eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqR 253 (1150)
+.++++-++|+.+--.|. .+.---..|-+.+..|..|.+....++..-=....+-+|.....+.-|.+.+.-+..-
T Consensus 120 ~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~ 199 (859)
T PF01576_consen 120 ATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEES 199 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 777788788865533332 2222223334444444444444444443333334445666666677777777777776
Q ss_pred hHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHHhhhhhhhhhhHHHhhhhhhhhhccccchhhhhHHhhhhcccccccccc
Q 001119 254 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEVYTISFPFLFLNLVLICFHVLFTGNYIKY 333 (1150)
Q Consensus 254 Ee~i~E~~~~l~~kEkeLEeakkkie~~~~~L~~ke~dl~~rl~~L~~rEee~t~~~~~~~l~~~~~~~h~l~~~~~~~~ 333 (1150)
+..+++......+++.++.++...++.. ...+..|+. .+
T Consensus 200 er~~~el~~~k~kL~~E~~eL~~qLee~-----------e~~~~~l~r-~k----------------------------- 238 (859)
T PF01576_consen 200 ERQRNELTEQKAKLQSENSELTRQLEEA-----------ESQLSQLQR-EK----------------------------- 238 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH-HH-----------------------------
Confidence 6666666666666666666666555433 222222211 00
Q ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHH--
Q 001119 334 DSSIECTQAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRA-- 411 (1150)
Q Consensus 334 ~~~~d~~~~~~~~e~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~-- 411 (1150)
..-+..|..+...|..- + -.+..|..+.+..+.+++..+..++++-++|...
T Consensus 239 -----------------~~L~~qLeelk~~leeE----t-----r~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~ 292 (859)
T PF01576_consen 239 -----------------SSLESQLEELKRQLEEE----T-----RAKQALEKQLRQLEHELEQLREQLEEEEEAKSELER 292 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------HHHHHHHHhhHHHHHhH----h-----hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 00112222222222110 0 1233455566666666666666666666655432
Q ss_pred -HHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001119 412 -WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQ 490 (1150)
Q Consensus 412 -~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlE 490 (1150)
+..-..+|..+-.+ -+.......+.|.+--+.|..++..+.+.-....+.-..|+.-+..|+.+-+.+. .+|+
T Consensus 293 qlsk~~~El~~~k~K---~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~---~eLe 366 (859)
T PF01576_consen 293 QLSKLNAELEQWKKK---YEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLT---SELE 366 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 11222222222222 2233333344455555666666666666666666666677777777777766655 3455
Q ss_pred Hhhh---hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHH
Q 001119 491 KSLS---SLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKRE 567 (1150)
Q Consensus 491 K~~a---~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~ 567 (1150)
+..+ .++.+.++++.....++.- -..+..+.|..-.....+..++-.|+.+.......|+.+.-...
T Consensus 367 ~~~~~~~~LeKKqr~fDk~l~e~k~~----------~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k 436 (859)
T PF01576_consen 367 KAQAAAAELEKKQRKFDKQLAEWKAK----------VEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENK 436 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4443 5555555565544333322 13456667777777777777777888777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHh
Q 001119 568 ELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEM 647 (1150)
Q Consensus 568 el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~Em 647 (1150)
.|+.|+.++..+.-...+-++ +-++.+.....-.+..+..++-+. +-+...|.
T Consensus 437 ~L~~El~dl~~q~~~~~k~v~-eLek~kr~LE~e~~El~~~leE~E--------------------------~~l~~~E~ 489 (859)
T PF01576_consen 437 QLQDELEDLTSQLDDAGKSVH-ELEKAKRRLEQEKEELQEQLEEAE--------------------------DALEAEEQ 489 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhccchhhhhhhccchH-HHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHH
Confidence 777777777655443333332 222222211111111111222111 22234555
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHH
Q 001119 648 QKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAEL 727 (1150)
Q Consensus 648 qkreLE~~iqkRqEE~E~~L~EREk~FEeek~~EL~~IN~lKE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm 727 (1150)
.+.-|+..|+.-+-++++.|.+|+..|++.+..=...|-+|..-+..|. +.|.++.-.|++++.+..+|
T Consensus 490 ~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~-----------k~r~~~~r~kkKLE~~l~eL 558 (859)
T PF01576_consen 490 KKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEER-----------KERAEALREKKKLESDLNEL 558 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 6677888888889999999999999999877654444444443333222 23444444455555544444
Q ss_pred HhhHHHH
Q 001119 728 NNSIEEL 734 (1150)
Q Consensus 728 ~kdIeeL 734 (1150)
.-.++..
T Consensus 559 e~~ld~~ 565 (859)
T PF01576_consen 559 EIQLDHA 565 (859)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4333333
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.32 E-value=0.16 Score=64.29 Aligned_cols=69 Identities=25% Similarity=0.247 Sum_probs=40.3
Q ss_pred HHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhHhH
Q 001119 703 IKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIA 771 (1150)
Q Consensus 703 ~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QREll~~ERe~f~~~vEklK~ckncg~~ 771 (1150)
...++.+-.+|...-+..+.--+.+-+-=+++..+..+.+.-++.|-+.|..|--.+++|-.+++=.-.
T Consensus 733 ~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~ 801 (1074)
T KOG0250|consen 733 ISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKL 801 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344555555555555555555444444444445555555666777778888777777776666554433
No 26
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.02 E-value=2.6 Score=56.63 Aligned_cols=345 Identities=20% Similarity=0.154 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHhhhhhccchhheehhhhh----------------hhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 001119 48 ALIAYIAKLETEIFEHQHHMGLLILEKKELA----------------SKYEQIKASAEAAELLQKHDRASHLSAIAEARK 111 (1150)
Q Consensus 48 aLia~IskLE~ElfdyQynMGLLLiEkKEw~----------------SK~eqlk~a~~eae~~lKREqaAhl~ALsEaeK 111 (1150)
.+-++|+.|++++-+---+.--|+=|+..|. |..++..+... .+..+..-+...=+...|..+
T Consensus 576 ~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~-~e~~l~qLe~~le~~~~E~~~ 654 (1822)
T KOG4674|consen 576 EASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRA-KEKRLRQLENELESYKKEKRE 654 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchh-HHHHHHHHHHHHHHHHHHHHH
Confidence 5668889999888776666666777777662 11111111111 122222222222233333333
Q ss_pred hhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhh---hhhhhhHHHHHHH-------HHhhhhHHHHHhhhhhHHHHH
Q 001119 112 REESLKKTLGVEKECIASLEKAVHEIRAESAETKVA---ADSKFAEARCMVE-------NAQKKFAEAEAKLHAAESLQA 181 (1150)
Q Consensus 112 REEnLkKALGvEKqCVadLEKAL~EmR~E~AeiK~t---sesKLaEA~aLv~-------~~eeKslEvE~KL~aAeaklA 181 (1150)
+...|.+. +.+|.+-..+||.+.-..+.. |--|+.-++--|+ .+.+....+..=++.++...+
T Consensus 655 ~~~~l~e~-------~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~ 727 (1822)
T KOG4674|consen 655 NLKKLQED-------FDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVH 727 (1822)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 344555555555554433321 2223333333333 233444445556777888888
Q ss_pred HHhhchhHHhhhHHHHhhhhhHHHHHHhHhh-------hhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001119 182 EANRYHRSAERKLQEVVAREDDLSRRIASFK-------ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERE 254 (1150)
Q Consensus 182 Ea~Rk~s~aeRKL~eVEaRE~~LrRerlSf~-------~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqRE 254 (1150)
.++---..+..++.-+++.=+.|+.+-..|. .|.+++....+.++.+|...+-.....++-...++.-+++|=
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i 807 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRI 807 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888887766554 567777777777777777776666666666665555555432
Q ss_pred HhhHh---------------hHHHHhHhHHHHHHHHhcHHHHHHHHhhhhhhhhhhHHHhhhhhhhh-hccccchhhhhH
Q 001119 255 DHILS---------------KLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEVY-TISFPFLFLNLV 318 (1150)
Q Consensus 255 e~i~E---------------~~~~l~~kEkeLEeakkkie~~~~~L~~ke~dl~~rl~~L~~rEee~-t~~~~~~~l~~~ 318 (1150)
+..-- .-..-..+...|+.++..|+....- +..-+..|+.....+ +....+..|+..
T Consensus 808 ~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~-------~~~~~~~l~~~~~~~~~le~k~~eL~k~ 880 (1822)
T KOG4674|consen 808 KELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESE-------LKSLLTSLDSVSTNIAKLEIKLSELEKR 880 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 1112222334444444444444333 333333333333222 011122334433
Q ss_pred ----HhhhhccccccccccCchhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhh--HHHHHHHHHhHHHHhhhhhhHHH
Q 001119 319 ----LICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQETLASKES--NEIQKIIANHESALRVKQSEFEA 392 (1150)
Q Consensus 319 ----~~~~h~l~~~~~~~~~~~~d~~~~~~~~e~~Le~KEkeLl~leEKL~aRE~--~EIQKLldeh~a~L~~Kk~EFEl 392 (1150)
.+-+|++.+|-|+ -|++. +...|.+.+.++-.+.++|....+ .++|...--..-+|. ...-
T Consensus 881 l~~~~~~~~~l~~~~~~-----~d~~~----~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~----~~ks 947 (1822)
T KOG4674|consen 881 LKSAKTQLLNLDSKSSN-----EDATI----LEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLE----SVKS 947 (1822)
T ss_pred HHHhHHHHhhccccchh-----hhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3556777666222 23333 445577777777778888877664 233333332233332 2233
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q 001119 393 ELAIKYKLAEDEIEKKRRAWELRDLDLG 420 (1150)
Q Consensus 393 ElE~krKs~eeEle~K~~~~E~rEvel~ 420 (1150)
+++.-|..++..|+.-...+-..|.+|.
T Consensus 948 ~lde~~~~~ea~ie~~~~k~tslE~~ls 975 (1822)
T KOG4674|consen 948 ELDETRLELEAKIESLHKKITSLEEELS 975 (1822)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444443333333333333
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.95 E-value=1.5 Score=52.87 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001119 525 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 604 (1150)
Q Consensus 525 ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~ 604 (1150)
+..-+|...+.+..+..-.++.+|+.++.+-+. .++|+|.+=++=...|+.++..= +++-+|..|.-.|..++=.-
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lrv 428 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLRV 428 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444567778888877776 68899888777777776555433 56778888887776666555
Q ss_pred HHhhhhhhhhhHHHHHHhhh
Q 001119 605 HKRDVDSLNREREEFMNKMV 624 (1150)
Q Consensus 605 ~krelEsL~~ekEsF~~kMe 624 (1150)
.+.+-|.|..++-+.|.-|.
T Consensus 429 ~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 429 AQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55565555555555554443
No 28
>PRK11637 AmiB activator; Provisional
Probab=96.57 E-value=1.3 Score=50.93 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh
Q 001119 472 KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMK 514 (1150)
Q Consensus 472 K~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~Lkitk 514 (1150)
-..+..++.++...+.+++..++.++..+......+..|...+
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k 214 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQAR 214 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554444444444443
No 29
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.52 E-value=4.7 Score=52.47 Aligned_cols=108 Identities=17% Similarity=0.238 Sum_probs=62.1
Q ss_pred hHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHH
Q 001119 104 SAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 183 (1150)
Q Consensus 104 ~ALsEaeKREEnLkKALGvEKqCVadLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa 183 (1150)
.+...++.+...++..+.--+.=...|+....+.+.++..-+.+..+.++..+.-++.|+.+...-+..= ++.+.+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~--i~~~~~~~ 351 (1201)
T PF12128_consen 274 ADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDAD--IEQLIARV 351 (1201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHH
Confidence 3344445555555555555555566677777778888888888888888888888888888777655321 33333333
Q ss_pred hhchhHHhhhHHHHhhhhhHHHHHHhHhhhh
Q 001119 184 NRYHRSAERKLQEVVAREDDLSRRIASFKAD 214 (1150)
Q Consensus 184 ~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E 214 (1150)
++. .+....+..+..+-+.|....-...+.
T Consensus 352 ~~l-~~~~~~~~~l~~~~~~Lt~~~~di~~k 381 (1201)
T PF12128_consen 352 DQL-PEWRNELENLQEQLDLLTSKHQDIESK 381 (1201)
T ss_pred Hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 223333444444444444444333333
No 30
>PRK11637 AmiB activator; Provisional
Probab=96.47 E-value=2.4 Score=48.76 Aligned_cols=26 Identities=15% Similarity=0.394 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhhhH
Q 001119 628 SEWFTKIQQERADFLLGIEMQKRDLE 653 (1150)
Q Consensus 628 s~~~eKiq~Erad~l~d~EmqkreLE 653 (1150)
..++..+.+-+.+++..|.-.+..|+
T Consensus 158 ~~~l~~i~~~d~~~l~~l~~~~~~L~ 183 (428)
T PRK11637 158 LAYFGYLNQARQETIAELKQTREELA 183 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666555
No 31
>PRK12704 phosphodiesterase; Provisional
Probab=96.43 E-value=0.13 Score=61.15 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001119 387 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 466 (1150)
Q Consensus 387 k~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK 466 (1150)
+.+++.|+...|..++.++..+ +.++..+|..|.+|+..|+.+.+.|..++++|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554433 444666666677777777777777777777777777766666666666555
Q ss_pred HhHHHH
Q 001119 467 EADLKK 472 (1150)
Q Consensus 467 ~le~eK 472 (1150)
+++.-.
T Consensus 132 ~~~~~~ 137 (520)
T PRK12704 132 ELEELI 137 (520)
T ss_pred HHHHHH
Confidence 554333
No 32
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.38 E-value=1.4 Score=47.29 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=55.6
Q ss_pred hhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhc
Q 001119 149 DSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQS 228 (1150)
Q Consensus 149 esKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~ 228 (1150)
..++..|-+=|.++..|..-+|..|..++..++.+..+-..++..+.+++.+-..|.-+-.+-..=++..|..+..-+..
T Consensus 28 ~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~ 107 (237)
T PF00261_consen 28 EKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRR 107 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555444444444444444444443333333333333333333344444444444444
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001119 229 LSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1150)
Q Consensus 229 L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLE 272 (1150)
+.+-..++.+..-+|.-...-|..=++++......+..++.+|.
T Consensus 108 ~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 108 AEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 44444444444444444444444444444444444444444443
No 33
>PRK00106 hypothetical protein; Provisional
Probab=96.28 E-value=0.58 Score=56.18 Aligned_cols=51 Identities=29% Similarity=0.388 Sum_probs=28.2
Q ss_pred hhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001119 418 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 468 (1150)
Q Consensus 418 el~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~l 468 (1150)
++..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+...++++
T Consensus 98 rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~ 148 (535)
T PRK00106 98 ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQV 148 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666666655555555555555555555554444444
No 34
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.18 E-value=2.6 Score=45.97 Aligned_cols=232 Identities=21% Similarity=0.340 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHH
Q 001119 526 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDSLRQERDAMR 602 (1150)
Q Consensus 526 eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek---~~~~E~erLK~Ek~~mr 602 (1150)
.|...|+.+-.++--|..+.+.|+.+...|...|+..-..+..++.+...+...-..... .+.+.-..|+.|.+-++
T Consensus 58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 445677777777777777788888888888888887777777776665555433332222 24456778888888888
Q ss_pred HHHHhhhhhhhhhHH-HHHHhhhhh-hhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001119 603 DQHKRDVDSLNRERE-EFMNKMVHE-HSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR 680 (1150)
Q Consensus 603 d~~krelEsL~~ekE-sF~~kMehE-~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEE~E~~L~EREk~FEeek~~ 680 (1150)
..|..++..|...-. .+-..|..- ...+..-+..=| ...+..+.+-+.++|..++.+-......-..
T Consensus 138 ~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----------~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 138 QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----------AQYEEIAQKNREELEEWYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHHHTTSTT----------------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----------HHHHHHHhhhhhhhhhhcccccccccccccc
Confidence 888888888876553 222222210 122233333333 3344445555555555555444433333333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001119 681 EFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE-LMVQRQKLEEQRQLLHADREEIQAES 759 (1150)
Q Consensus 681 EL~~IN~lKE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIee-L~~ls~KLk~QREll~~ERe~f~~~v 759 (1150)
--..+.+ +..|+-.++..+..|..+-.-+......|+.+..++....+. +......+......+..=|..+-.+.
T Consensus 207 ~~~~~~~----~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 207 SSEELES----AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccch----hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 2222222 233344444444444444444444445555555544433332 22233334444444444455566666
Q ss_pred HHhhhhhhhHhHH
Q 001119 760 ERLKKLEDLKIAV 772 (1150)
Q Consensus 760 EklK~ckncg~~~ 772 (1150)
..+..+-|-+...
T Consensus 283 ~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 283 REYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 6565555555444
No 35
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.05 E-value=0.27 Score=58.40 Aligned_cols=76 Identities=28% Similarity=0.313 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHH
Q 001119 386 KQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFE 465 (1150)
Q Consensus 386 Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeE 465 (1150)
.+.+++.|+...|..++.+++.+ +.++..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....
T Consensus 52 ~~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~ 124 (514)
T TIGR03319 52 ALLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKE 124 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554443 44455556666666666666666666666666666666666666665555
Q ss_pred HHh
Q 001119 466 KEA 468 (1150)
Q Consensus 466 K~l 468 (1150)
+++
T Consensus 125 ~e~ 127 (514)
T TIGR03319 125 EEL 127 (514)
T ss_pred HHH
Confidence 554
No 36
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.92 E-value=1.7 Score=48.78 Aligned_cols=167 Identities=20% Similarity=0.176 Sum_probs=117.4
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001119 433 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 512 (1150)
Q Consensus 433 Le~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~Lki 512 (1150)
+=+...++..|..=++=+++.+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +
T Consensus 126 ~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~ 203 (325)
T PF08317_consen 126 LVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--I 203 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h
Confidence 33445555566666666666666666555555555555555555555555555555555555555555544444333 2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001119 513 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 592 (1150)
Q Consensus 513 tkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~e 592 (1150)
..-+..++ ..||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=..|-.
T Consensus 204 ~~~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~ 279 (325)
T PF08317_consen 204 ESCDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVK 279 (325)
T ss_pred hhcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 22334444 34667777777778888888899999999999999999999999999999999999989999999999
Q ss_pred hhHHHHHHHHHHH
Q 001119 593 SLRQERDAMRDQH 605 (1150)
Q Consensus 593 rLK~Ek~~mrd~~ 605 (1150)
+||..-+.++...
T Consensus 280 ~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 280 RLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887654
No 37
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.82 E-value=3.4 Score=44.40 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=20.8
Q ss_pred HhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhh
Q 001119 413 ELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHL 453 (1150)
Q Consensus 413 E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~ 453 (1150)
+--|..+...|..+..-+-.|..--.+.+....+|+.-+..
T Consensus 193 e~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~e 233 (237)
T PF00261_consen 193 EFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555544443
No 38
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.79 E-value=5.4 Score=46.55 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHH
Q 001119 692 AEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQ 737 (1150)
Q Consensus 692 a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~l 737 (1150)
+..+...++.++.+|+..-.++......+..+|.+++.++.++..-
T Consensus 356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666666666666665433
No 39
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.79 E-value=5.5 Score=46.54 Aligned_cols=47 Identities=30% Similarity=0.246 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001119 529 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 575 (1150)
Q Consensus 529 eEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~ 575 (1150)
.++..++...+.|.....++..+....+.+|..+...++++.++...
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444445555555555555555554443
No 40
>PRK12704 phosphodiesterase; Provisional
Probab=95.61 E-value=0.23 Score=59.00 Aligned_cols=67 Identities=30% Similarity=0.286 Sum_probs=35.0
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHH
Q 001119 395 AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 464 (1150)
Q Consensus 395 E~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~ae 464 (1150)
...+..++.++...+.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|...
T Consensus 56 ke~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~r 122 (520)
T PRK12704 56 KEALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQK 122 (520)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666555 445566666666666655555555444444444444444444433333
No 41
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.57 E-value=0.0033 Score=77.69 Aligned_cols=224 Identities=22% Similarity=0.241 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHHHhhhhh-------ccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhh
Q 001119 44 RDKAALIAYIAKLETEIFEHQH-------HMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESL 116 (1150)
Q Consensus 44 rD~~aLia~IskLE~ElfdyQy-------nMGLLLiEkKEw~SK~eqlk~a~~eae~~lKREqaAhl~ALsEaeKREEnL 116 (1150)
|.+..|.+..++|++|+-+... ..+-|-=.+.-|.+..++++..+++- .+.+.+-...+..++.-=+.|
T Consensus 201 r~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE----tr~k~~L~~~l~~le~e~~~L 276 (859)
T PF01576_consen 201 RQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE----TRAKQALEKQLRQLEHELEQL 276 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH----hhhhhhhHHHHHHHHHHHHHH
Confidence 3444556666777777665544 44455555666677766666666543 222333334556666666789
Q ss_pred hhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHH
Q 001119 117 KKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQE 196 (1150)
Q Consensus 117 kKALGvEKqCVadLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~e 196 (1150)
+..|.-+-.+...|++.|.-+.++.+.+|--++.=.. ..+..+++=---...+|..+...+-+++.+.+.+++.-.-
T Consensus 277 ~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~---~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~r 353 (859)
T PF01576_consen 277 REQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAE---QRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKR 353 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876665333 3333333322233456666777777777777777766665
Q ss_pred HhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHH
Q 001119 197 VVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEAS 274 (1150)
Q Consensus 197 VEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLEea 274 (1150)
+..==.++.-+.-.-.+-+...++...+--..|.+|..++......+-.+++-....+-.++..-..|....-.++.+
T Consensus 354 L~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~l 431 (859)
T PF01576_consen 354 LQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEEL 431 (859)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 555555555555555666666666555555778899988887777777777766666666666666665555555433
No 42
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.42 E-value=13 Score=48.26 Aligned_cols=295 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHH
Q 001119 396 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL 475 (1150)
Q Consensus 396 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L 475 (1150)
++++++..|++..-..-+.-|+=....+++...-..-.==++=.+.-.-.++...+..++.-=.++...-..- -..+
T Consensus 181 ~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~---e~ei 257 (1141)
T KOG0018|consen 181 KKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKK---EREI 257 (1141)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHH---HHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001119 476 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 555 (1150)
Q Consensus 476 ~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekF 555 (1150)
..-+.+.-++-.++.++=..+..+..++.+-.+-+++-++= +.++-.|......-....+.+..++..-++|
T Consensus 258 ~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~--------~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ 329 (1141)
T KOG0018|consen 258 RVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENA--------SHLKKRLEEIEKDIETAKKDYRALKETIERL 329 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhh--------ccchhHHHHhhhhHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhh---hhh
Q 001119 556 EAEWEMIDEKREELRKEAERVAVERV---VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHE---HSE 629 (1150)
Q Consensus 556 E~EWE~LDEKR~el~KEa~~I~eEre---~lek~~~~E~erLK~Ek~~mrd~~krelEsL~~ekEsF~~kMehE---~s~ 629 (1150)
+++|..++-++++..+|.+.....|- .+..-...|.++|+.+-...- ..+|+.|++...+=-+...|+ +.+
T Consensus 330 ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~~~~~~e 406 (1141)
T KOG0018|consen 330 EKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA---LEELEVLNRNMRSDQDTLDHELERRAE 406 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 001119 630 WFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 709 (1150)
Q Consensus 630 ~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEE~E~~L~EREk~FEeek~~EL~~IN~lKE~a~kE~Eev~lE~~rLekE 709 (1150)
+.+++...+.+. ..+.+++..+.-...+-.+..++.+ ..+.-+-++...+..+.-+...|+...-..
T Consensus 407 lE~r~k~l~~sv------------er~~~~~~~L~~~i~s~~~~~~e~~-~d~~~l~~~~~~~~~~~~e~n~eL~~~~~q 473 (1141)
T KOG0018|consen 407 LEARIKQLKESV------------ERLDKRRNKLAAKITSLSRSYEELK-HDLDSLESLVSSAEEEPYELNEELVEVLDQ 473 (1141)
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHhhhhh
Q 001119 710 RMEINMDR 717 (1150)
Q Consensus 710 R~Ei~~~k 717 (1150)
--+...++
T Consensus 474 l~das~dr 481 (1141)
T KOG0018|consen 474 LLDASADR 481 (1141)
T ss_pred HHhhhhhh
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.32 E-value=14 Score=48.02 Aligned_cols=144 Identities=26% Similarity=0.257 Sum_probs=92.8
Q ss_pred HhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 001119 450 RSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKE 529 (1150)
Q Consensus 450 Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKe 529 (1150)
.+..+.+....+...+++|+.--..+.+-++++..+..+.+++.....+....+..+.++|...+ .+||.
T Consensus 732 ~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~----------~el~~ 801 (1074)
T KOG0250|consen 732 DISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALK----------EELKL 801 (1074)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----------HHHHH
Confidence 34455566666666777777777777888888888999999999999999988888888777665 66777
Q ss_pred HHHHHHHHHHHhHHhhHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhhHHHHHHHHHHH
Q 001119 530 ELDVVRAQKLELMVETDKLQ---LEKAKFEAEWEMIDEKREELRKEAERVAVER-VVVSKSLKDERDSLRQERDAMRDQH 605 (1150)
Q Consensus 530 EId~~R~Qke~LlkEae~Lk---~EKekFE~EWE~LDEKR~el~KEa~~I~eEr-e~lek~~~~E~erLK~Ek~~mrd~~ 605 (1150)
-+|++|.++....-=.+.+| ..-..-|++-..+.+.+++-..-|..+..+. ..++.+.+ +.+.|
T Consensus 802 r~dk~~s~e~~~~HyE~~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~------------~~~ei 869 (1074)
T KOG0250|consen 802 REDKLRSAEDEKRHYEDKLKSRLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEALGK------------TVAEI 869 (1074)
T ss_pred HHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcccc------------hHHHH
Confidence 77777776655444444444 1122335555556666665555555554433 23333332 46667
Q ss_pred Hhhhhhhhhh
Q 001119 606 KRDVDSLNRE 615 (1150)
Q Consensus 606 krelEsL~~e 615 (1150)
++++.-|+..
T Consensus 870 k~ei~rlk~~ 879 (1074)
T KOG0250|consen 870 KREIKRLKRQ 879 (1074)
T ss_pred HHHHHHHHHH
Confidence 7777666654
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.27 E-value=17 Score=48.86 Aligned_cols=160 Identities=18% Similarity=0.258 Sum_probs=98.8
Q ss_pred HHhHHHHHHHHHhhhhhhhhhh-hhh-----hh---------------HHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhh
Q 001119 127 IASLEKAVHEIRAESAETKVAA-DSK-----FA---------------EARCMVENAQKKFAEAEAKLHAAESLQAEANR 185 (1150)
Q Consensus 127 VadLEKAL~EmR~E~AeiK~ts-esK-----La---------------EA~aLv~~~eeKslEvE~KL~aAeaklAEa~R 185 (1150)
|.+|+.+|++.|--.-.||++. +.- +. |-+.|++.| +-.-.|+..|..++..+..
T Consensus 232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA----ag~r~rk~eA~kkLe~tE~ 307 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEA----LELRRELYTSRRQLAAEQY 307 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 5567777777777666666554 111 11 223344444 2233666666777777777
Q ss_pred chhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHh
Q 001119 186 YHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS 265 (1150)
Q Consensus 186 k~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~ 265 (1150)
+...++..+.+++.+...|++++-....-....+ ++...-..+..+...+.+...++......+.+-.+.+.+....+.
T Consensus 308 nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEle 386 (1486)
T PRK04863 308 RLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAE 386 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777778888888888887776654433333 333444556666666667777777777777777777777777777
Q ss_pred HhHHHHHHHHhcHHHHHHHHhhhhhh
Q 001119 266 RKEKELEASRANVEEKFKALNEEKSN 291 (1150)
Q Consensus 266 ~kEkeLEeakkkie~~~~~L~~ke~d 291 (1150)
..+.++..++..+......+..-...
T Consensus 387 elEeeLeeLqeqLaelqqel~elQ~e 412 (1486)
T PRK04863 387 AAEEEVDELKSQLADYQQALDVQQTR 412 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766665443333333333
No 45
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.18 E-value=15 Score=47.57 Aligned_cols=30 Identities=23% Similarity=0.022 Sum_probs=19.4
Q ss_pred ccCCCCCcchhHHHHHHHHHh---ccCCCCccccC
Q 001119 834 SASPPSLARFSWIKRFADLVF---KHSGENSVEND 865 (1150)
Q Consensus 834 ~~SP~s~~~~SWlrKCTskIF---k~SP~Kk~~~~ 865 (1150)
+.|--|||-=|.+-=| +|| +|.|..--+-+
T Consensus 1079 SL~ELSGGQRSLVALs--LIlamL~fkPAPlYILD 1111 (1174)
T KOG0933|consen 1079 SLSELSGGQRSLVALS--LILAMLKFKPAPLYILD 1111 (1174)
T ss_pred HHHHhcCchHHHHHHH--HHHHHHcCCCCceeehh
Confidence 4566788888888766 554 67775443443
No 46
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.06 E-value=0.3 Score=58.00 Aligned_cols=71 Identities=28% Similarity=0.285 Sum_probs=42.2
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001119 395 AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 468 (1150)
Q Consensus 395 E~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~l 468 (1150)
...+..+++++..++.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-+.|..+++.|..-++++
T Consensus 50 ke~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 50 KEALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567766666665 4556667777777777666666665555555555555555555544444444
No 47
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=94.98 E-value=0.72 Score=48.50 Aligned_cols=71 Identities=32% Similarity=0.389 Sum_probs=46.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001119 392 AELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI 462 (1150)
Q Consensus 392 lElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~ 462 (1150)
-++...|..++.|+..++.++..+|..|..+|+.|..+...|+.+...|..++.+|..+...|+.++..+.
T Consensus 60 ee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 60 EEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888777777666666666666666666666666655555555555555544444
No 48
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.96 E-value=17 Score=47.04 Aligned_cols=127 Identities=24% Similarity=0.328 Sum_probs=88.1
Q ss_pred hhhhHHHhHHHHHHhhhhHHHH------hhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001119 429 REHDLEVQSRALVDKEKDLVER------SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQ 502 (1150)
Q Consensus 429 REqaLe~k~~~lkEKEkdL~~K------sk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~q 502 (1150)
.|..+...+..+..+..||-+| ++.-+++++=++.+=..| +.-++.-++..+.++-|++-+.+.+++...+
T Consensus 357 ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~ 433 (1200)
T KOG0964|consen 357 EEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKL---KRGINDTKEQENILQKEIEDLESELKEKLEE 433 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433 334456666666665555 7788888888888888888888888888888
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001119 503 VNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 558 (1150)
Q Consensus 503 i~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~E 558 (1150)
|..-...+.-++..-.++...-..||++.|..-.....|--|.-.|+...++.+-+
T Consensus 434 i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~d 489 (1200)
T KOG0964|consen 434 IKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEED 489 (1200)
T ss_pred HHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777788888888888888887666666777767777666665543
No 49
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.86 E-value=16 Score=46.30 Aligned_cols=244 Identities=24% Similarity=0.215 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHH
Q 001119 48 ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECI 127 (1150)
Q Consensus 48 aLia~IskLE~ElfdyQynMGLLLiEkKEw~SK~eqlk~a~~eae~~lKREqaAhl~ALsEaeKREEnLkKALGvEKqCV 127 (1150)
.+-.-|..|..|| --|..++-|.-+...-.+-|+.+.. ++-+..-.-| |-|=-|.-.+| +
T Consensus 71 ~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~r-----l~~E~er~~~E-------------l 130 (775)
T PF10174_consen 71 KAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFER-----LQAERERLQRE-------------L 130 (775)
T ss_pred HHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHH-----HHHHHHHHHHH-------------H
Confidence 3445566666666 6666666555554444445555544 4433322222 11111111111 1
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHH
Q 001119 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR 207 (1150)
Q Consensus 128 adLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRe 207 (1150)
.-|-+.|-+|...+.-.|-+-+..-.+...|.+-++.|-..+ ++..-.+.+.+.+.+.+++-..|+-
T Consensus 131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~------------~~~~~~~~~~~~~~~~e~~~~~le~- 197 (775)
T PF10174_consen 131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSA------------EAEEEDNEALRRIREAEARIMRLES- 197 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc------------cchhhhhHHHHHHHHHHHHHHHHHH-
Confidence 224577888888888888888888888888888776665544 1111122333344444444333321
Q ss_pred HhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHH-HH-HHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHH
Q 001119 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHER-LL-DAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 285 (1150)
Q Consensus 208 rlSf~~Erea~E~~i~~QRe~L~EweKkLqq~eeR-L~-d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~L 285 (1150)
-++.++.....-|+. ....++-..+- .. -.|..|...+..|.+..+.+..++-++..++..++....
T Consensus 198 ------lle~~e~~~~~~r~~---l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~-- 266 (775)
T PF10174_consen 198 ------LLERKEKEHMEAREQ---LHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEA-- 266 (775)
T ss_pred ------HHHHHHHHhhhhhHH---HHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc--
Confidence 122222222111211 11111111100 01 357788888888888888888877777776666532210
Q ss_pred hhhhhhhhhhHHHhhhhhhhhhccccchhhhhHHhhhhccccccccccCchhhhhHHHHHHHHHHHHhHHHHHHHHHHHh
Q 001119 286 NEEKSNLDLTLVSLLKREEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQETLA 365 (1150)
Q Consensus 286 ~~ke~dl~~rl~~L~~rEee~t~~~~~~~l~~~~~~~h~l~~~~~~~~~~~~d~~~~~~~~e~~Le~KEkeLl~leEKL~ 365 (1150)
+.+-... .+-..--|++|.-+ .++..+..|..|..||..++-+|.
T Consensus 267 -----~r~~~~k------------------~le~~~s~~~~mK~------------k~d~~~~eL~rk~~E~~~~qt~l~ 311 (775)
T PF10174_consen 267 -----DRDRLDK------------------QLEVYKSHSLAMKS------------KMDRLKLELSRKKSELEALQTRLE 311 (775)
T ss_pred -----chHHHHH------------------HHHHHHhhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001 11112233333211 135556889999999999999998
Q ss_pred hhhhH
Q 001119 366 SKESN 370 (1150)
Q Consensus 366 aRE~~ 370 (1150)
.....
T Consensus 312 ~~~~~ 316 (775)
T PF10174_consen 312 TLEEQ 316 (775)
T ss_pred HHHhh
Confidence 77653
No 50
>PRK00106 hypothetical protein; Provisional
Probab=94.38 E-value=9.6 Score=46.30 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=21.5
Q ss_pred CcchhhhhhccccchhchhhhhhccccccccchhhhhhccC
Q 001119 904 SENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRV 944 (1150)
Q Consensus 904 s~~~~~~~~~~~ese~~~~~n~~~~~~~~~~~~~agrkrr~ 944 (1150)
|+....+++-+||.= +|+.--+ -.--++||||-=||
T Consensus 452 s~~~~i~rl~~lE~i----a~~~~gV-~~~yaiqaGREiRv 487 (535)
T PRK00106 452 SMENYIKRLRDLEEI----ANSFDGV-QNSFALQAGREIRI 487 (535)
T ss_pred CHHHHHHHHHHHHHH----HhcCCcH-HHHHHHhcCCeEEE
Confidence 456677777777732 2222111 23457999999886
No 51
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.17 E-value=25 Score=45.61 Aligned_cols=116 Identities=22% Similarity=0.286 Sum_probs=63.1
Q ss_pred HHhHHHHHHHHHHHhhhhhHHHHHHHHH---hHHHHhhhhhhHHH--HHHHHhhhHH-----HHHHHHHHHHHhhhhhhh
Q 001119 351 QKKEQKLLVSQETLASKESNEIQKIIAN---HESALRVKQSEFEA--ELAIKYKLAE-----DEIEKKRRAWELRDLDLG 420 (1150)
Q Consensus 351 e~KEkeLl~leEKL~aRE~~EIQKLlde---h~a~L~~Kk~EFEl--ElE~krKs~e-----eEle~K~~~~E~rEvel~ 420 (1150)
+.+|.-|..++|+-..+++ |+.||.. -=-.|+.-|-+++. +++..|++++ .|+..=+..++.-|.+..
T Consensus 170 erreeSlkim~ET~qK~ek--I~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~ 247 (1200)
T KOG0964|consen 170 ERREESLKIMEETKQKREK--INELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS 247 (1200)
T ss_pred HhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 4577788899999988876 6666553 33334444444432 5677777765 333333333333333332
Q ss_pred ---hhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001119 421 ---QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 468 (1150)
Q Consensus 421 ---h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~l 468 (1150)
..=..+.-+-....-.++.++..=+.|+.++..|.+--..+.+.+-++
T Consensus 248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~ 298 (1200)
T KOG0964|consen 248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKI 298 (1200)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333334455666666677777777777555555554333
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.92 E-value=20 Score=43.77 Aligned_cols=125 Identities=21% Similarity=0.268 Sum_probs=91.6
Q ss_pred HHHHHHHHH----hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHH
Q 001119 130 LEKAVHEIR----AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLS 205 (1150)
Q Consensus 130 LEKAL~EmR----~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~Lr 205 (1150)
|+.-+..+| .+...||+.++.=++.|..+|+.+......++..+.....-+.++-.+.-.+
T Consensus 68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~--------------- 132 (546)
T KOG0977|consen 68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA--------------- 132 (546)
T ss_pred HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------------
Confidence 455555555 4778999999999999999999998888888877766655555543332222
Q ss_pred HHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHH
Q 001119 206 RRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKF 282 (1150)
Q Consensus 206 RerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~ 282 (1150)
++...--|+++.+|...|-+.+.-++-.++-+..=|+.....-++..++..+|..+++.++.+.
T Consensus 133 -------------~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 133 -------------EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred -------------HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2222334677888888888888888888887777777777777788888888888888887764
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=26 Score=44.57 Aligned_cols=119 Identities=24% Similarity=0.300 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001119 476 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 555 (1150)
Q Consensus 476 ~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekF 555 (1150)
.+-++.+.+=.++|++-|-.+++|.++-.++.++.+--+.+|-+-.|++.+=|.+++ |.++.++-+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlE--------lekqLerQR------ 381 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE--------LEKQLERQR------ 381 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH------
Confidence 355778888899999999999999999999999999999988888887776655543 433332211
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 001119 556 EAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNR 614 (1150)
Q Consensus 556 E~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~krelEsL~~ 614 (1150)
|.=-.+-++-.|+.++-.--|+.+++...-|-++.| ...|.+|..|+-|-+-.
T Consensus 382 ----eiE~qrEEerkkeie~rEaar~ElEkqRqlewErar--~qem~~Qk~reqe~iv~ 434 (1118)
T KOG1029|consen 382 ----EIERQREEERKKEIERREAAREELEKQRQLEWERAR--RQEMLNQKNREQEWIVY 434 (1118)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHH
Confidence 111112223334444444456666666666666554 34455555555554433
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.08 E-value=16 Score=39.97 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=47.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHh
Q 001119 656 IEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNN 729 (1150)
Q Consensus 656 iqkRqEE~E~~L~EREk~FEeek~~EL~~IN~lKE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~k 729 (1150)
++.+-..+|+.+.+-+..+.. ++...+..-.....++.+++.++.+.-.|-+++---|-.|+-+.+--++
T Consensus 235 l~~~~~~Le~~l~~le~~~~~----~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 235 LRAKNASLERQLRELEQRLDE----EREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHHH----HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344555666666665555554 3444455555667788888888888888888888888888877766554
No 55
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.25 E-value=18 Score=38.61 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001119 517 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 596 (1150)
Q Consensus 517 R~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~ 596 (1150)
+..-+.|-.-||++|...|.+....-+...++.++-.+.-.--..+.+.+++|++.+......+..|....
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k--------- 92 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK--------- 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 44556677889999999999999999999999999999999999999999999998887665554443322
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHH---HhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhh-HHHHHHHHHHHHhHHHHHHH
Q 001119 597 ERDAMRDQHKRDVDSLNREREEFM---NKMVHEHSEWFTKIQQERADFLLGIEMQKRDL-ENCIEKRREELESSFREREK 672 (1150)
Q Consensus 597 Ek~~mrd~~krelEsL~~ekEsF~---~kMehE~s~~~eKiq~Erad~l~d~EmqkreL-E~~iqkRqEE~E~~L~EREk 672 (1150)
..+. ....++..|..+.+.+. .+++.||.+|..+-.. +++|+. ||-.+ ..-++++...+...|..|+.
T Consensus 93 --~rl~-~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 93 --ARLK-ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred --HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 23555666666665553 3344555555544442 222322 22222 23455556666666666665
Q ss_pred HHHH
Q 001119 673 AFEE 676 (1150)
Q Consensus 673 ~FEe 676 (1150)
.+.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5543
No 56
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.23 E-value=25 Score=40.16 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=35.1
Q ss_pred hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 001119 431 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN 483 (1150)
Q Consensus 431 qaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~ 483 (1150)
..|..++..+.++--++-.+.+.+.++=+++++....|-.+-.+|-..+.+++
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein 82 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEIN 82 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666667766667777777777667777666666666666655555554
No 57
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=92.16 E-value=4 Score=43.10 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=39.7
Q ss_pred HHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001119 411 AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 469 (1150)
Q Consensus 411 ~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le 469 (1150)
++..+..++..+|..+.+||..|+.+.+.|..++..|+.+...|..+...|...+++++
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777777777777777666666666666655555554
No 58
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.94 E-value=55 Score=43.38 Aligned_cols=223 Identities=21% Similarity=0.297 Sum_probs=125.6
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001119 508 DKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL 587 (1150)
Q Consensus 508 E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~ 587 (1150)
++....+.++.++-+--.+.++.+..+-.....|+++.+..+-++..|++.-|-.+..-+..+.|...+.+..+..++-+
T Consensus 384 n~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l 463 (1293)
T KOG0996|consen 384 NKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEEREL 463 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777888888888888888888888888888888888888888888888888877776666666555
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHh---hhhhHhhhhhhHHHHHHHHHHHH
Q 001119 588 KDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF---LLGIEMQKRDLENCIEKRREELE 664 (1150)
Q Consensus 588 ~~E~erLK~Ek~~mrd~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~---l~d~EmqkreLE~~iqkRqEE~E 664 (1150)
....+.|+++=.+.+..+ +.-...|. -|..++..-|+.+ --++++-. ...+...++.++..
T Consensus 464 ~e~~~~l~~~t~~~~~e~-----------~~~ekel~----~~~~~~n~~~~e~~vaesel~~L~-~~~~~~~~~~e~lk 527 (1293)
T KOG0996|consen 464 DEILDSLKQETEGIREEI-----------EKLEKELM----PLLKQVNEARSELDVAESELDILL-SRHETGLKKVEELK 527 (1293)
T ss_pred HHHHHHHhhhhhhhHHHH-----------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 555555555555444443 33333332 3444433333322 12222222 23455566777777
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001119 665 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 744 (1150)
Q Consensus 665 ~~L~EREk~FEeek~~EL~~IN~lKE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q 744 (1150)
+.|..-.....+.+. .|+.++..+. .++. |..++..+-.++..+ ++.---.|+.+++++.+-
T Consensus 528 ~~L~~~~~~~~e~~~----~l~~~k~~l~----~~k~-------e~~~~~k~l~~~~~e---~~~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 528 GKLLASSESLKEKKT----ELDDLKEELP----SLKQ-------ELKEKEKELPKLRKE---ERNLKSQLNKLRQRVEEA 589 (1293)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhhh----hHHH-------HHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 766655544444332 2444444332 2233 333333332222222 222222344555566655
Q ss_pred HHHHHH--hHHHHHHHHHHhhh
Q 001119 745 RQLLHA--DREEIQAESERLKK 764 (1150)
Q Consensus 745 REll~~--ERe~f~~~vEklK~ 764 (1150)
+..+.+ -|..++.++-++|.
T Consensus 590 ks~~~~~~s~~kVl~al~r~ke 611 (1293)
T KOG0996|consen 590 KSSLSSSRSRNKVLDALMRLKE 611 (1293)
T ss_pred HHHHHhhhhhhHHHHHHHHHHH
Confidence 554443 34567777776664
No 59
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=91.93 E-value=51 Score=43.05 Aligned_cols=226 Identities=22% Similarity=0.270 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhh--hhHHHHHHHHHH
Q 001119 529 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK--SLKDERD--SLRQERDAMRDQ 604 (1150)
Q Consensus 529 eEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek--~~~~E~e--rLK~Ek~~mrd~ 604 (1150)
.|-|.-|+|-++|+.|--.|.-+++..-.-|+.+.-=-+-=.-+-+.+..+++.|+. .++.+-+ ++=..-...+.
T Consensus 315 ~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqs- 393 (1195)
T KOG4643|consen 315 SERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQS- 393 (1195)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhh-
Confidence 455566667777777777777777777777776543111112233444444444444 2222211 01000000000
Q ss_pred HHhhhhhhhhhHHHHHHhhhhhhhhHHHHHH--HHHHHhhhhhHhhhhhhHHH---HHHHHHHHHhHHHHHHHHHHHH--
Q 001119 605 HKRDVDSLNREREEFMNKMVHEHSEWFTKIQ--QERADFLLGIEMQKRDLENC---IEKRREELESSFREREKAFEEE-- 677 (1150)
Q Consensus 605 ~krelEsL~~ekEsF~~kMehE~s~~~eKiq--~Erad~l~d~EmqkreLE~~---iqkRqEE~E~~L~EREk~FEee-- 677 (1150)
.++|.+-. =+-.|+-||--++-|+. .|| +.+.--|+-+|++. +...++.+...-.-+.+.....
T Consensus 394 --ss~Ee~~S----K~leleke~KnLs~k~e~Leer---i~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~ 464 (1195)
T KOG4643|consen 394 --SSYEELIS----KHLELEKEHKNLSKKHEILEER---INQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSL 464 (1195)
T ss_pred --hhHHHHHH----HHHHHHHHhHhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 12222211 12234444443333321 111 11222234444443 3334444444444455555555
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHH----HHHHHHHHHHHHH---HHH
Q 001119 678 KMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEEL----MVQRQKLEEQRQL---LHA 750 (1150)
Q Consensus 678 k~~EL~~IN~lKE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL----~~ls~KLk~QREl---l~~ 750 (1150)
..-+++..|++-+-...+.++...-.+.+-+=-..-..+-.++.....++..++-.. .-+++++..-+++ +-.
T Consensus 465 e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ 544 (1195)
T KOG4643|consen 465 ENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEE 544 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 556777788877776666665544422222111111111122222222222222222 2223333333333 346
Q ss_pred hHHHHHHHHHHhhh
Q 001119 751 DREEIQAESERLKK 764 (1150)
Q Consensus 751 ERe~f~~~vEklK~ 764 (1150)
++..++.+|..|+.
T Consensus 545 ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 545 ENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHH
Confidence 77788889988887
No 60
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.56 E-value=60 Score=43.13 Aligned_cols=199 Identities=19% Similarity=0.252 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHH---HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 001119 353 KEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELA---IKYKLAEDEIEKKRRAWELRDLDLGQREESLLER 429 (1150)
Q Consensus 353 KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE---~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kR 429 (1150)
..+.+..|+.- -..+..++.++.+.+.+.=+. .+.-.+|+ .++++.+.++..+-.++ +--.++.-++++.+-
T Consensus 432 ~~~~~~~le~~-l~~~~~~~~~~~~~~~~~~~~--~~~~keL~e~i~~lk~~~~el~~~q~~l--~q~~~ke~~ek~~~~ 506 (1317)
T KOG0612|consen 432 IHKTLQILEQS-LVNEMQEKEKLDEKCQAVAEL--EEMDKELEETIEKLKSEESELQREQKAL--LQHEQKEVEEKLSEE 506 (1317)
T ss_pred cccchhhcccc-hhhHHHHhhhHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHH
Confidence 44555555555 344556666666655544321 12222222 33444455554422222 222333344444444
Q ss_pred hhhHHHhHHHHHHhhhhH---HHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001119 430 EHDLEVQSRALVDKEKDL---VERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCA 506 (1150)
Q Consensus 430 EqaLe~k~~~lkEKEkdL---~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee 506 (1150)
+..+.+-++.+..++..| ..+...+--......+..+.|+.....+..+-+....+..-..-.-..+...+......
T Consensus 507 ~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~ 586 (1317)
T KOG0612|consen 507 EAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDL 586 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccH
Confidence 444433333333333322 22222222223333334444443333333333333333333333333444444555667
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001119 507 KDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 556 (1150)
Q Consensus 507 ~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE 556 (1150)
.+.+...++.-..+..+..+|..+.+.+|.|.-.+..+..+|+.+-...+
T Consensus 587 ~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~ 636 (1317)
T KOG0612|consen 587 EDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLE 636 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 77888888888889999999999999999999888888777776654443
No 61
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.99 E-value=46 Score=40.76 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 001119 482 VNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 550 (1150)
Q Consensus 482 l~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~ 550 (1150)
+..|..++.......... ..+.....+++..+.+..++..=...+.+++..++.+...+.+..++|++
T Consensus 184 ~~~L~~dl~~~~~~~~~~-~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKS-ELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665543322211 12344455555555555555555555666666666666666555555544
No 62
>PRK12705 hypothetical protein; Provisional
Probab=90.24 E-value=28 Score=42.27 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=33.0
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 001119 395 AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 460 (1150)
Q Consensus 395 E~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEks 460 (1150)
...|..++.+++.++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus 62 ~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 120 (508)
T PRK12705 62 LRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE 120 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666555555 44466666666666666666665555555444444443
No 63
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.57 E-value=56 Score=39.47 Aligned_cols=370 Identities=21% Similarity=0.279 Sum_probs=180.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhh
Q 001119 343 VIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQR 422 (1150)
Q Consensus 343 ~~~~e~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~ 422 (1150)
+...+..|..-..+|-.+.+.|...|+.-.+=|- ||+.-++. -++|..|........
T Consensus 29 ~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~----------------ELe~akr~-veel~~kLe~~~~~~------ 85 (522)
T PF05701_consen 29 VKEKETELEKAQEELAKLKEQLEAAEREKAQALS----------------ELESAKRT-VEELKLKLEKAQAEE------ 85 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH-HHHHHHHHHHHHHHH------
Confidence 4556677888888888888888888776554332 33333332 334555443322110
Q ss_pred HHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001119 423 EESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQ 502 (1150)
Q Consensus 423 Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~q 502 (1150)
. .-.++.+.---++++.+.......... |-..|.....+...--..|..=+++|.+++.++......-..=..+
T Consensus 86 --~--~a~~~~e~~k~r~~e~e~~~~~~~~~~--~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~ 159 (522)
T PF05701_consen 86 --K--QAEEDSELAKFRAKELEQGIAEEASVA--WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQ 159 (522)
T ss_pred --H--HHHHhhHHhHHHHHHHhhhhcccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112222222224455555554443322 4444555555555555667777777777777777766665555666
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001119 503 VNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKL----QLEKAKFEAEWEMIDEKREELRKEAERVAV 578 (1150)
Q Consensus 503 i~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~L----k~EKekFE~EWE~LDEKR~el~KEa~~I~e 578 (1150)
+..+.-..+....--.++..==..||+.|+..+.-...-..+.-.+ .+.+..|+.+-+.-.++-..|.++...+..
T Consensus 160 aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~ 239 (522)
T PF05701_consen 160 AEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKD 239 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555544433433333558888888765433333332222 244455555555555555555555533333
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhH-----
Q 001119 579 ERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLE----- 653 (1150)
Q Consensus 579 Ere~lek~~~~E~erLK~Ek~~mrd~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE----- 653 (1150)
=..+|.... .+-..|+.|...... ..++.-. +.-.-...++..-..+..+++--+.+|+
T Consensus 240 Le~kL~~a~-~~l~~Lq~El~~~~~---~~l~~~~------------~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E 303 (522)
T PF05701_consen 240 LESKLAEAS-AELESLQAELEAAKE---SKLEEEA------------EAKEKSSELQSSLASAKKELEEAKKELEKAKEE 303 (522)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHH---HHHhhhH------------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333321 233444443322222 2222111 0111111122222222222222222221
Q ss_pred -HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHH
Q 001119 654 -NCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIE 732 (1150)
Q Consensus 654 -~~iqkRqEE~E~~L~EREk~FEeek~~EL~~IN~lKE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIe 732 (1150)
+.+..--+-+...| ++.|.. +..+..--..+...+..+..++.++..+-.-+...-.+....+.+|...+.
T Consensus 304 ~~~L~~~vesL~~EL-e~~K~e-------l~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lq 375 (522)
T PF05701_consen 304 ASSLRASVESLRSEL-EKEKEE-------LERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQ 375 (522)
T ss_pred HHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 11112222222222 111111 111111112233334444444444444444444444555667888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 001119 733 ELMVQRQKLEEQRQLLHADREEIQAESERLKKL 765 (1150)
Q Consensus 733 eL~~ls~KLk~QREll~~ERe~f~~~vEklK~c 765 (1150)
.|..-....+.-.+....+-...-..+++.|..
T Consensus 376 ql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~ 408 (522)
T PF05701_consen 376 QLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAA 408 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888887764
No 64
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.50 E-value=2.4 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 001119 656 IEKRREELESSFREREKAFEEE 677 (1150)
Q Consensus 656 iqkRqEE~E~~L~EREk~FEee 677 (1150)
..+|..-+--.+..+-..|.+-
T Consensus 618 ~ekr~~RLkevf~~ks~eFr~a 639 (722)
T PF05557_consen 618 AEKRNQRLKEVFKAKSQEFREA 639 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666677777788765
No 65
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.45 E-value=88 Score=41.61 Aligned_cols=259 Identities=20% Similarity=0.234 Sum_probs=144.1
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhh----hhhhH
Q 001119 348 ASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLD----LGQRE 423 (1150)
Q Consensus 348 ~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEve----l~h~E 423 (1150)
..++.-+.+|...-+|+..-...+.++.-+ |+..+. +-..++.+++ ..++.++..|+.+.|. ++|.=
T Consensus 341 ~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~-~~~~~~----e~~~~~kn~~----~~~k~~~~~~e~~~vk~~E~lK~~~ 411 (1293)
T KOG0996|consen 341 EELEKIEEGLKDENEKFDIESNEEVEKNEA-VKKEIK----ERAKELKNKF----ESLKKKFQDLEREDVKREEKLKRLT 411 (1293)
T ss_pred HHHHHHHhHHHHHHHHhhhhhhHHHHHHHH-HHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777776444444444322 111111 1122222222 3345555666655443 33333
Q ss_pred HHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHH-------hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001119 424 ESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKE-------NKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSL 496 (1150)
Q Consensus 424 ekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkE-------ksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~l 496 (1150)
.++.|-+..+++-.++..+.++-.+.=.....+-. +.+.-+++.|+..+..|.. .-..+..++.++..++
T Consensus 412 ~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~---~t~~~~~e~~~~ekel 488 (1293)
T KOG0996|consen 412 SKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQ---ETEGIREEIEKLEKEL 488 (1293)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHH
Confidence 44444444444444444444443332222111111 1122222233222222222 2234566777777888
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001119 497 DEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 576 (1150)
Q Consensus 497 e~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I 576 (1150)
.....++++++..+.+.++|=.-|+-.+..+..-.+.+-.+-.-++...++.+..--....+...+--+..++.+++...
T Consensus 489 ~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~ 568 (1293)
T KOG0996|consen 489 MPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKL 568 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHH
Confidence 88888999999999999988888888888877777777777777777777777777777777777766777777777766
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHH--hhhhhhhhhHHH
Q 001119 577 AVERVVVSKSLKDERDSLRQERDAMRDQHK--RDVDSLNREREE 618 (1150)
Q Consensus 577 ~eEre~lek~~~~E~erLK~Ek~~mrd~~k--relEsL~~ekEs 618 (1150)
..+=..+...++.=+.++-.-+..|...-. .=+++|.+.+++
T Consensus 569 ~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 569 RKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence 665555555555444444433333332222 235667766665
No 66
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.77 E-value=57 Score=37.34 Aligned_cols=167 Identities=23% Similarity=0.194 Sum_probs=114.6
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001119 433 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 512 (1150)
Q Consensus 433 Le~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~Lki 512 (1150)
|-+...++..|.-=++=|++-++.-...|...-..+......|.++-+-++.+..++....+.+..+..++......+..
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 44556666677777777777776666666555555555555555555555555555555555555555444444333322
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001119 513 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 592 (1150)
Q Consensus 513 tkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~e 592 (1150)
- +..++..+..+|++. =.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus 201 ~--d~~eL~~lk~~l~~~----~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 201 C--DPTELDRAKEKLKKL----LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred C--CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 255665555555443 4444556667888999999999999999999999999998888888888889899999
Q ss_pred hhHHHHHHHHHHH
Q 001119 593 SLRQERDAMRDQH 605 (1150)
Q Consensus 593 rLK~Ek~~mrd~~ 605 (1150)
+|+..-..++..+
T Consensus 275 ~Lk~~~~~Le~l~ 287 (312)
T smart00787 275 KLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988887654
No 67
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.56 E-value=74 Score=38.45 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=44.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 001119 460 KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA 517 (1150)
Q Consensus 460 sL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER 517 (1150)
.|....++|+.-+..|.+-++++..|...++.++.+++..+..+..-+++.......-
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v 339 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV 339 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3677777888888888888888888888888888888887777777777666555443
No 68
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.18 E-value=1.5e+02 Score=40.57 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=28.6
Q ss_pred cccccccccCCcccccccCCCceeecCCCcchhhhh--hccccchhchh
Q 001119 876 DASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKR--TVDLESENNQN 922 (1150)
Q Consensus 876 ~~~~~~~~~k~q~~ry~~gepkvi~eVPs~~~~~~~--~~~~ese~~~~ 922 (1150)
....+..++++| .||| -|++||-.|...++ +..|..++...
T Consensus 756 ~~~v~~~~~~~~-~r~s-----~~p~~p~~gr~are~~~~~l~~~~~~~ 798 (1486)
T PRK04863 756 EKAVVVKIADRQ-WRYS-----RFPEVPLFGRAAREKRIEQLRAEREEL 798 (1486)
T ss_pred cCCeeeeecchh-hhhc-----cCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 344555678888 6998 47899999998876 55666665433
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.03 E-value=62 Score=36.69 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhH
Q 001119 529 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 563 (1150)
Q Consensus 529 eEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LD 563 (1150)
.+|+..+.+...+....+.+..++..+..+=..++
T Consensus 230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 230 KELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433333
No 70
>PRK09039 hypothetical protein; Validated
Probab=85.56 E-value=29 Score=39.78 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=67.3
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHH
Q 001119 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (1150)
Q Consensus 116 LkKALGvEKqCVadLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~ 195 (1150)
|--.|+.+...-++|+-.|.+||+.+. ++...-+.+....++...-..+++..+....+.|++..-.++++.+...
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~----~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~ 140 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLS----AAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE 140 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777899999999999999999999888 2333333333333322222335666666666666666666666666666
Q ss_pred HHhhhhhHHHHHHhHhhhhhhHHHHHH
Q 001119 196 EVVAREDDLSRRIASFKADCEEKEREI 222 (1150)
Q Consensus 196 eVEaRE~~LrRerlSf~~Erea~E~~i 222 (1150)
-+.+.=..||+++.+..++..+.|...
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667766666666666665555
No 71
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.14 E-value=31 Score=35.63 Aligned_cols=101 Identities=26% Similarity=0.269 Sum_probs=59.7
Q ss_pred hhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhh--------------c
Q 001119 163 QKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQ--------------S 228 (1150)
Q Consensus 163 eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe--------------~ 228 (1150)
++|++.|+.||..+.+.-|-+-..--.++|.|..++.---.+-.+--+-.+++++.+..|.--.. .
T Consensus 2 e~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 2 EEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred cHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777776666666677777766665555555555555555555555444332 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHH
Q 001119 229 LSDRKKILQQEHERLLDAQTLLNEREDHILSKLQE 263 (1150)
Q Consensus 229 L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~ 263 (1150)
--.+.+.||+.++++.+...+.-.-...+-...+.
T Consensus 82 k~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23456666777777766665554444444443333
No 72
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.42 E-value=1.2e+02 Score=37.81 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q 001119 474 LLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIK 526 (1150)
Q Consensus 474 ~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~e 526 (1150)
.++.=.-.|.+-|.||.|++..+-.=.++|+.-..+|.-|-.-.+|++-=.++
T Consensus 492 RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAK 544 (594)
T PF05667_consen 492 RILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAK 544 (594)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 34445566778889999999999999999999999999999888888776666
No 73
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.57 E-value=1.2e+02 Score=37.31 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=23.4
Q ss_pred HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001119 543 VETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 577 (1150)
Q Consensus 543 kEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~ 577 (1150)
.+--++..+|...+.+...+...+.+.++.+..+.
T Consensus 255 ~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 255 SEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666677777777777777777777766554
No 74
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=82.66 E-value=1.6 Score=53.48 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=0.0
Q ss_pred hHhhHHHHhHhHHHHHHHHhcHHHHHHHH
Q 001119 257 ILSKLQELSRKEKELEASRANVEEKFKAL 285 (1150)
Q Consensus 257 i~E~~~~l~~kEkeLEeakkkie~~~~~L 285 (1150)
+......++..+.++++++..++.-...+
T Consensus 180 ~~~~e~~~~~l~~e~~~l~~~le~~~~~~ 208 (722)
T PF05557_consen 180 AENAESQIQSLESELEELKEQLEELQSEL 208 (722)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666665544444
No 75
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=80.72 E-value=42 Score=32.37 Aligned_cols=89 Identities=27% Similarity=0.312 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001119 401 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 480 (1150)
Q Consensus 401 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKE 480 (1150)
+...|..|+.+...++..+..++..|.++++.|....-.+..-=++- +....-..+..+.+......--.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken----------~~k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKEN----------EAKRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888888888888888888888887766665443333 33333344444444444444445
Q ss_pred HHHHHHHHHHHhhhhhHHH
Q 001119 481 EVNIIKSDLQKSLSSLDEK 499 (1150)
Q Consensus 481 el~~lK~dlEK~~a~le~q 499 (1150)
+|..+..+|..+.+.+..-
T Consensus 82 ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666655555433
No 76
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=80.63 E-value=80 Score=38.48 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=40.5
Q ss_pred HhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001119 442 DKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 511 (1150)
Q Consensus 442 EKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~Lk 511 (1150)
+++++++.+-.-...||..-....+..+..+.++....+++...+..+++-...++.+...+.++++..+
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555555556665566666666566666666666666666666666666555555555544433
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.87 E-value=1.8e+02 Score=36.88 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHH-HHhhhhHHHHhhhhH
Q 001119 394 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRAL-VDKEKDLVERSHLLE 455 (1150)
Q Consensus 394 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~l-kEKEkdL~~Ksk~LK 455 (1150)
+-++++.+|.|+..-++++-.+|-.+..+|..+ ..++.. ++-++|.+.=+.+|-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL--------QELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHHH
Confidence 445556666666666666666666666666555 222333 444555555555543
No 78
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.62 E-value=83 Score=32.27 Aligned_cols=117 Identities=18% Similarity=0.290 Sum_probs=60.9
Q ss_pred chhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH---hhhhhhhHhhHhhHH
Q 001119 186 YHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ---TLLNEREDHILSKLQ 262 (1150)
Q Consensus 186 k~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q---~lLNqREe~i~E~~~ 262 (1150)
+...++-++++++.|-..+-.++.||..=..-.|.++..-...|.+-..+|.++..+..... +-+..=|+.+-..+.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~ 94 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEK 94 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 33445555666666666666666666666666666666666666666666666666554422 222222333333333
Q ss_pred HHhHhHHHHHHHHhcHHH---HHHHHhhhhhhhhhhHHHhhhh
Q 001119 263 ELSRKEKELEASRANVEE---KFKALNEEKSNLDLTLVSLLKR 302 (1150)
Q Consensus 263 ~l~~kEkeLEeakkkie~---~~~~L~~ke~dl~~rl~~L~~r 302 (1150)
.|+.-...|..+..+.+. ...+|....++...++..|..+
T Consensus 95 ~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 95 KLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK 137 (143)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333333333333222 3344555555555555555443
No 79
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.35 E-value=1.4e+02 Score=34.72 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=12.2
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhhHHHHHH
Q 001119 607 RDVDSLNREREEFMNKMVHEHSEWFTKIQ 635 (1150)
Q Consensus 607 relEsL~~ekEsF~~kMehE~s~~~eKiq 635 (1150)
+.+..|..+|-...+.|++|+.-++.+++
T Consensus 113 rkl~qLr~EK~~lE~~Le~EqE~~V~kL~ 141 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLEQEQEYLVNKLQ 141 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444444444444433333
No 80
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=78.02 E-value=72 Score=34.99 Aligned_cols=130 Identities=22% Similarity=0.325 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 001119 481 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 560 (1150)
Q Consensus 481 el~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE 560 (1150)
+|-.|+..+--.++.+.....++......+..- . -|++.|-.+-.-...|++-|+..-..++.|.-
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K---~-----------~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTK---Q-----------LELEVCENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---h-----------HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 445555555555555555555555444433221 1 24444444444455555556555555555554
Q ss_pred hhHHHHHHH---HHHH------HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHH
Q 001119 561 MIDEKREEL---RKEA------ERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWF 631 (1150)
Q Consensus 561 ~LDEKR~el---~KEa------~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~krelEsL~~ekEsF~~kMehE~s~~~ 631 (1150)
.|..--..+ .... ......+.. -......|+.+-+.+ +.+|-..+..++.|+...++||..|.
T Consensus 98 ~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~----~~~~~~~l~~e~erL----~aeL~~er~~~e~q~~~Fe~ER~~W~ 169 (202)
T PF06818_consen 98 ELREELACAGRLKRQCQLLSESDEAKAQRQA----GEDELGSLRREVERL----RAELQRERQRREEQRSSFEQERRTWQ 169 (202)
T ss_pred HHHHHHHhhccchhhhccccccchhHHhhcc----ccccchhHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 443333332 0000 000000100 011233344443333 34555667788999999999999997
Q ss_pred H
Q 001119 632 T 632 (1150)
Q Consensus 632 e 632 (1150)
+
T Consensus 170 e 170 (202)
T PF06818_consen 170 E 170 (202)
T ss_pred H
Confidence 4
No 81
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=77.97 E-value=1.2e+02 Score=33.89 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=32.9
Q ss_pred CCCCCCccc---ccCCCccccCCCCcHHHHHHHHHccCChHHHhhhcHHHHHHHHHHHHHHHhhhhh
Q 001119 2 ASPSSGRLA---ITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQH 65 (1150)
Q Consensus 2 ~~p~~~~l~---~~~g~rvl~~~~~d~~iWkr~~eaG~De~s~~rrD~~aLia~IskLE~ElfdyQy 65 (1150)
.+|..|.++ |..|++|-.++.= +.+|...+ ..+...|.+.+.+|..++..++-
T Consensus 47 ~~~~~G~v~~i~V~eG~~V~kG~~L----------~~ld~~~~-~~~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 47 QHLEGGIVREILVREGDRVKAGQVL----------VELDATDV-EADAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred ccCCCcEEEEEEeCCCCEecCCCeE----------EEEccchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 356678776 8899998644321 12344433 34667777888888777766543
No 82
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=76.26 E-value=0.83 Score=55.85 Aligned_cols=60 Identities=30% Similarity=0.310 Sum_probs=0.0
Q ss_pred hhhHHHHHH---HHHHHHHHHHHHH-HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001119 517 AGELSVLEI---KLKEELDVVRAQK-LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 576 (1150)
Q Consensus 517 R~E~~~LQ~---eLKeEId~~R~Qk-e~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I 576 (1150)
+..+.+|+. .|+..++....++ ..|....+++...+.+++.+.-..-++-.+++.+.+.+
T Consensus 458 ~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~l 521 (713)
T PF05622_consen 458 RERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEEL 521 (713)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555553 2333333332222 34667777777777777777666555555555544433
No 83
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.01 E-value=2.1e+02 Score=35.56 Aligned_cols=276 Identities=21% Similarity=0.293 Sum_probs=124.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001119 390 FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 469 (1150)
Q Consensus 390 FElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le 469 (1150)
||+|+-.-|+.+++--..+ .+-+.+|+...+.+ +.-..++.++++++.+==..+..+...|...+-++.
T Consensus 90 ye~El~~ar~~l~e~~~~r----a~~e~ei~kl~~e~-------~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~ 158 (546)
T KOG0977|consen 90 YEAELATARKLLDETARER----AKLEIEITKLREEL-------KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEIN 158 (546)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHHHHHHhHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHH
Confidence 5666666666665432221 22234444444444 444444444444444433444444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001119 470 LKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 549 (1150)
Q Consensus 470 ~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk 549 (1150)
.-+...-.=-+++.-||.+...+...|..=+.+++.|. --|.++.---..|.++|+-+..+=.. ++.
T Consensus 159 ~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et-------llr~d~~n~~q~Lleel~f~~~~h~~------eI~ 225 (546)
T KOG0977|consen 159 TLKRRIKALEDELKRLKAENSRLREELARARKQLDDET-------LLRVDLQNRVQTLLEELAFLKRIHKQ------EIE 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhccHH------HHH
Confidence 33333333344555556666666666655555555443 11233333334466666655433221 223
Q ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh-----------hhH
Q 001119 550 LEKAKFEAEW--EMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN-----------RER 616 (1150)
Q Consensus 550 ~EKekFE~EW--E~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~krelEsL~-----------~ek 616 (1150)
+++.+|..+- +.=|+=+.+|..=+.+|-.+=++. .+.=+.+++.-|++.+..++ ..|
T Consensus 226 e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~----------~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~r 295 (546)
T KOG0977|consen 226 EERRKARRDTTADNREYFKNELALAIREIRAQYEAI----------SRQNRKDIESWYKRKIQEIRTSAERANVEQNYAR 295 (546)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHhhhccccchhHHHH
Confidence 3344444443 222233333433333333322222 22223334444444444443 233
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 001119 617 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKEL 696 (1150)
Q Consensus 617 EsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEE~E~~L~EREk~FEeek~~EL~~IN~lKE~a~kE~ 696 (1150)
|+.+. |. ..|-.=|++ |.|+|-.-. .+.++.+.++..|.+=-+.|+..=.. -..+|
T Consensus 296 EEl~~-~R-------~~i~~Lr~k-lselE~~n~----~L~~~I~dL~~ql~e~~r~~e~~L~~-----------kd~~i 351 (546)
T KOG0977|consen 296 EELRR-IR-------SRISGLRAK-LSELESRNS----ALEKRIEDLEYQLDEDQRSFEQALND-----------KDAEI 351 (546)
T ss_pred HHHHH-HH-------hcccchhhh-hccccccCh----hHHHHHHHHHhhhhhhhhhhhhhhhh-----------HHHHH
Confidence 33221 11 111111111 124444333 45567778888888888888764221 12345
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhHH
Q 001119 697 EQVTLEIKRLDLERMEINMDRQRRDRE 723 (1150)
Q Consensus 697 Eev~lE~~rLekER~Ei~~~ke~le~e 723 (1150)
..|.-|+..|-.|.+.+--.+.-|+-+
T Consensus 352 ~~mReec~~l~~Elq~LlD~ki~Ld~E 378 (546)
T KOG0977|consen 352 AKMREECQQLSVELQKLLDTKISLDAE 378 (546)
T ss_pred HHHHHHHHHHHHHHHHhhchHhHHHhH
Confidence 556666666666666665566555543
No 84
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=75.18 E-value=1.7e+02 Score=34.07 Aligned_cols=163 Identities=22% Similarity=0.334 Sum_probs=106.5
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhh
Q 001119 540 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV----ERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRE 615 (1150)
Q Consensus 540 ~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~e----Ere~lek~~~~E~erLK~Ek~~mrd~~krelEsL~~e 615 (1150)
.|..+-.-||.+-..+-..|-.|-+.-..|+..+-.|.- +=|-++..+..=.+.|+++|..+--.|.++=|.|.-.
T Consensus 31 sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~ 110 (310)
T PF09755_consen 31 SLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTND 110 (310)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444455555544444444444432 2233344444456789999999988888877777655
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHhhhhhhHHHHH
Q 001119 616 REEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRER---EKAFEEEKMREFQQISSLKEKA 692 (1150)
Q Consensus 616 kEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEE~E~~L~ER---Ek~FEeek~~EL~~IN~lKE~a 692 (1150)
=-.=.+.+.+|+..+-..+.+|...++.-+--+=..|+.++...+.++++-.+++ |.+.|.+-+ +|-..+
T Consensus 111 L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE-------~lvN~L 183 (310)
T PF09755_consen 111 LSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQE-------ALVNRL 183 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHH
Confidence 4445778889999999999999999888888888888888888888888655554 233333332 344456
Q ss_pred HHHHHHHHHHHHHhHHH
Q 001119 693 EKELEQVTLEIKRLDLE 709 (1150)
Q Consensus 693 ~kE~Eev~lE~~rLekE 709 (1150)
-+-|.++..|...|+..
T Consensus 184 ~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 184 WKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788888887777665
No 85
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.03 E-value=98 Score=34.20 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001119 480 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 558 (1150)
Q Consensus 480 Eel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~E 558 (1150)
+.|..+..+..+....+......+..--+++++.++++..|...+.++.+++..++.+..-..+|-..|.++...++.+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888999999999999999999999998888888888888777776666655555555444444333
No 86
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=74.99 E-value=3.2e+02 Score=37.09 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhh
Q 001119 82 EQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETK 145 (1150)
Q Consensus 82 eqlk~a~~eae~~lKREqaAhl~ALsEaeKREEnLkKALGvEKqCVadLEKAL~EmR~E~AeiK 145 (1150)
.+|..++++++.++++=..|-+.| +||. .+-.+||..-+.=-.-.+++.+++|.=+-+|+
T Consensus 1422 ~~l~~~~ae~eq~~~~v~ea~~~a-seA~---~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~ 1481 (1758)
T KOG0994|consen 1422 TQLRSKLAEAEQTLSMVREAKLSA-SEAQ---QSAQRALEQANASRSQMEESNRELRNLIQQVR 1481 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667776666655555544 2222 22334444444444445555555555555554
No 87
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.59 E-value=1.1e+02 Score=31.73 Aligned_cols=87 Identities=22% Similarity=0.313 Sum_probs=64.4
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001119 505 CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 584 (1150)
Q Consensus 505 ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~le 584 (1150)
+-.+.|+.++.+.+=+-.-=--|-.+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555544333322345667788888889999999999999999999999999999999999999997777766
Q ss_pred Hhhhhhh
Q 001119 585 KSLKDER 591 (1150)
Q Consensus 585 k~~~~E~ 591 (1150)
+.+....
T Consensus 87 k~lq~~q 93 (140)
T PF10473_consen 87 KELQKKQ 93 (140)
T ss_pred HHHHHHH
Confidence 6555433
No 88
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=72.40 E-value=57 Score=37.14 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=9.3
Q ss_pred HHHHHHHhhHHHHHHH
Q 001119 722 REWAELNNSIEELMVQ 737 (1150)
Q Consensus 722 ~e~aEm~kdIeeL~~l 737 (1150)
-.|.||+-=.....-|
T Consensus 166 V~W~EINAA~Gq~~LL 181 (314)
T PF04111_consen 166 VEWNEINAAWGQTALL 181 (314)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 3788888766655443
No 89
>PRK12705 hypothetical protein; Provisional
Probab=71.60 E-value=2.5e+02 Score=34.50 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001119 386 KQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 450 (1150)
Q Consensus 386 Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~K 450 (1150)
.+.++|-|+...|..+... ..-+.+||-.+..+.+.+.+++..|+.+...+..+++++..+
T Consensus 64 ~~~~~e~e~~~~~~~~~~~----e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 64 ERNQQRQEARREREELQRE----EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556665555544333 222444444444444445555554444444444444444444
No 90
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=71.29 E-value=3.8e+02 Score=36.38 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=21.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 001119 723 EWAELNNSIEELMVQRQKLEEQRQLLHAD 751 (1150)
Q Consensus 723 e~aEm~kdIeeL~~ls~KLk~QREll~~E 751 (1150)
--.|+++ +-+|..++.+|...|....++
T Consensus 1016 kE~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1016 KEKEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence 3457788 899999999998887655544
No 91
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=70.08 E-value=4.1e+02 Score=36.26 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=48.9
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhhhhHHHHHHHHHHHHhhhh
Q 001119 537 QKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK------SLKDERDSLRQERDAMRDQHKRDVD 610 (1150)
Q Consensus 537 Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek------~~~~E~erLK~Ek~~mrd~~krelE 610 (1150)
-...+-++.+.++.++..|+++--.+-+.+.++..+...|+..=..+.. -+..+-..+..+...+.+.+.....
T Consensus 834 ~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~ 913 (1294)
T KOG0962|consen 834 SLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKV 913 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhh
Confidence 3344556666666666666666665555555555544444433222221 1112445666667777777777777
Q ss_pred hhhhhHHHHHHhhh
Q 001119 611 SLNREREEFMNKMV 624 (1150)
Q Consensus 611 sL~~ekEsF~~kMe 624 (1150)
.|...-++|..-|.
T Consensus 914 ~l~e~~s~~e~~k~ 927 (1294)
T KOG0962|consen 914 ELEEAQSEKEELKN 927 (1294)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666654444
No 92
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=69.95 E-value=3.5e+02 Score=35.43 Aligned_cols=111 Identities=22% Similarity=0.195 Sum_probs=77.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhH---HHHHHHHHHHHHhhhhhhh
Q 001119 344 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA---EDEIEKKRRAWELRDLDLG 420 (1150)
Q Consensus 344 ~~~e~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~---eeEle~K~~~~E~rEvel~ 420 (1150)
...+--|.-.+..|.+||-++..+|. +.|+| ++-.+.+..-+.+-|.|||.-+--+ +++|-.|+.++--.=-+|.
T Consensus 95 ~llEddlk~~~sQiriLQn~c~~lE~-ekq~l-Q~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~ 172 (1265)
T KOG0976|consen 95 NLLEDDLKHHESQIRILQNKCLRLEM-EKQKL-QDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLH 172 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 45667777888999999999998884 45554 3445566667777788887766544 4566677777666666666
Q ss_pred hhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHH
Q 001119 421 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEE 456 (1150)
Q Consensus 421 h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKE 456 (1150)
..=..|..-+-.+..++....+..+.+..|++.++|
T Consensus 173 nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 173 DKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666777777777777777777766654
No 93
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=69.55 E-value=4.1e+02 Score=36.12 Aligned_cols=211 Identities=18% Similarity=0.231 Sum_probs=102.3
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHh----HHHHHHHHhcHHHHHHHHhhhhhhhhhhHH
Q 001119 222 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRK----EKELEASRANVEEKFKALNEEKSNLDLTLV 297 (1150)
Q Consensus 222 i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~k----EkeLEeakkkie~~~~~L~~ke~dl~~rl~ 297 (1150)
|..--.+|..-+-+|..----+.-+.. |-++-.++++....++.. ..-|+++.......-.+++.-..+|...-.
T Consensus 1520 I~e~v~sL~nVd~IL~~T~~di~ra~~-L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~ 1598 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIARAEN-LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQ 1598 (1758)
T ss_pred HHHHHHhcccHHHHHHhhhhhHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333334444444455444333333332 223344444443333322 233555555555555555555555555545
Q ss_pred HhhhhhhhhhccccchhhhhHHhhhhccccccccccCchhhhhHHHHHHHHHHHHhHHHHHHHHHHH--hhhhhHHHHHH
Q 001119 298 SLLKREEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQETL--ASKESNEIQKI 375 (1150)
Q Consensus 298 ~L~~rEee~t~~~~~~~l~~~~~~~h~l~~~~~~~~~~~~d~~~~~~~~e~~Le~KEkeLl~leEKL--~aRE~~EIQKL 375 (1150)
.|..-.++.. -+-+.+.+.-..|...|..+..|.-|. ++++-..|++.
T Consensus 1599 ~l~kv~~~t~------------------------------~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~ 1648 (1758)
T KOG0994|consen 1599 LLAKVQEETA------------------------------AAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKT 1648 (1758)
T ss_pred HHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5544444330 011112233334444455454444443 46677888888
Q ss_pred HHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhh----hhHHHhHHHHHHhhhhHHHHh
Q 001119 376 IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLERE----HDLEVQSRALVDKEKDLVERS 451 (1150)
Q Consensus 376 ldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kRE----qaLe~k~~~lkEKEkdL~~Ks 451 (1150)
.+--...--.-++.|+ .|....+.++.=++.|..... .-..+=++|..|- .+-+.++..|++.|-.+..+.
T Consensus 1649 a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~~~r~~g~~----~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~ 1723 (1758)
T KOG0994|consen 1649 AGSAKEQALSAEQGLE-ILQKYYELVDRLLEKRMEGSQ----AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNE 1723 (1758)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 8765554444556666 777777777666665543221 1112222222221 233455666666666666666
Q ss_pred hhhHHHHhhhHHHHHHh
Q 001119 452 HLLEEKENKLIAFEKEA 468 (1150)
Q Consensus 452 k~LKEkEksL~aeEK~l 468 (1150)
.+|.-+...|--.++++
T Consensus 1724 ~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1724 QALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHHHHHHHhhhHHHHH
Confidence 66666555555555555
No 94
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=69.51 E-value=3e+02 Score=34.41 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=28.6
Q ss_pred hhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhH
Q 001119 147 AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1150)
Q Consensus 147 tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~ 189 (1150)
..+.|...+..-..-+.+...++..+|.+|++.++.--+++..
T Consensus 184 ~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 184 QGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455555666666666777777777777777777776665544
No 95
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=69.42 E-value=2.2e+02 Score=32.95 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Q 001119 652 LENCIEKRREELESSFREREKAFEE 676 (1150)
Q Consensus 652 LE~~iqkRqEE~E~~L~EREk~FEe 676 (1150)
-|..+-.+..+++..|..+.++-+.
T Consensus 132 ~E~~lvq~I~~L~k~le~~~k~~e~ 156 (294)
T COG1340 132 EERELVQKIKELRKELEDAKKALEE 156 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677777777766543
No 96
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=68.75 E-value=1.3e+02 Score=33.31 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=52.9
Q ss_pred HhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHH
Q 001119 162 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241 (1150)
Q Consensus 162 ~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~ee 241 (1150)
|+.+..+.+.+|...+.....+...-.....+...++..-..++.++..+...+...+..+..-+..-..-.+--.....
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~ 82 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ 82 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444444444444444444444444444444333333333332222222222222222333
Q ss_pred HHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHH
Q 001119 242 RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKA 284 (1150)
Q Consensus 242 RL~d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~ 284 (1150)
.+.+.+..+.+-.+-....+.+..+++.+|..++...+.+...
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555556666666666666655554333
No 97
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.66 E-value=1.4e+02 Score=30.16 Aligned_cols=73 Identities=23% Similarity=0.284 Sum_probs=51.6
Q ss_pred hHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001119 436 QSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 511 (1150)
Q Consensus 436 k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~Lk 511 (1150)
...+|+++-.++..++..+..++..+...- ......+...++++..++.-++-.++....+.++...+.++|+
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~---~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQL---KSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555554444 4447788889999999999999999999999998888888776
No 98
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.07 E-value=75 Score=36.24 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001119 516 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 549 (1150)
Q Consensus 516 ER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk 549 (1150)
+.+.+..-...+.++.+.+-.|........|.|+
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444456666777777777777777777665
No 99
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.88 E-value=1.5e+02 Score=36.14 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001119 529 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 608 (1150)
Q Consensus 529 eEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~kre 608 (1150)
.+++..|..-+++..|++.|+++-..-+++=..+.-|-.+++-.+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58899999999999999999999888888888888888888888877776665544 45556666666667776666
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHH
Q 001119 609 VDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRR 660 (1150)
Q Consensus 609 lEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRq 660 (1150)
-+.++.+.-+--. ++.|++-|=|+|=.-|...+
T Consensus 423 ~e~~~~~~~s~d~-------------------~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKDE-------------------KITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHhHheehhhhh
Confidence 5555544433322 33467777666655554443
No 100
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=65.86 E-value=2.6e+02 Score=32.86 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhhhhccchhhee-hhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhh
Q 001119 49 LIAYIAKLETEIFEHQHHMGLLILE-KKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121 (1150)
Q Consensus 49 Lia~IskLE~ElfdyQynMGLLLiE-kKEw~SK~eqlk~a~~eae~~lKREqaAhl~ALsEaeKREEnLkKALG 121 (1150)
+-..+...|..|-+|+-.=|+.+-+ .....+...++.+.+..++. .+..++.+-..|+..++
T Consensus 173 ~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-----------~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 173 YEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARL-----------ELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhc
Confidence 4456667777778886443444332 22233344444444443332 24556666666666555
No 101
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=65.53 E-value=2e+02 Score=30.98 Aligned_cols=167 Identities=23% Similarity=0.309 Sum_probs=109.7
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHH----HHHHHhh
Q 001119 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEA----AELLQKH 97 (1150)
Q Consensus 26 ~iWkr~~eaG---~De~s~~rrD~~-aLia~IskLE~ElfdyQynMGLLLiEkKEw~SK~eqlk~a~~e----ae~~lKR 97 (1150)
.+|+||..+. ++..--+--|+. .|--+|-.++..|-...-.+.-++-.++-..-+|+++...++. |+.++..
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4899988764 566666778999 7888999999999999999999999999999999888776653 3444432
Q ss_pred hhh-hhhhHHH---HHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhh-----hhhhH--------------
Q 001119 98 DRA-SHLSAIA---EARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAAD-----SKFAE-------------- 154 (1150)
Q Consensus 98 Eqa-Ahl~ALs---EaeKREEnLkKALGvEKqCVadLEKAL~EmR~E~AeiK~tse-----sKLaE-------------- 154 (1150)
-.- ----||. .++..=..|...+.--+.-|..|..-|++|+..+.++|..-+ .+-|.
T Consensus 82 G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~ 161 (219)
T TIGR02977 82 GREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRS 161 (219)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 111 1111222 223344556667777778888999999999998888876555 33333
Q ss_pred --HHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHh
Q 001119 155 --ARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVV 198 (1150)
Q Consensus 155 --A~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVE 198 (1150)
|.+..+-++.|....|+.--+.. ....+.++.+|.+++
T Consensus 162 ~~a~~~fer~e~ki~~~ea~aea~~------~~~~~~l~~~l~~l~ 201 (219)
T TIGR02977 162 DEAMARFEQYERRVDELEAQAESYD------LGRKPSLEDEFAELE 201 (219)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh------ccCCCCHHHHHHHhc
Confidence 33444445555444444322221 122455777777765
No 102
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=63.58 E-value=2.2e+02 Score=33.25 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=98.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 001119 485 IKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 564 (1150)
Q Consensus 485 lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDE 564 (1150)
|-..|+.-...+.+---+++.+..+|..-..++.|+.+ ....+=|+.+++|..+|+..++ .+++++++.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 44556666667777778899999999999999999998 4567889999999999987665 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001119 565 KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 616 (1150)
Q Consensus 565 KR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~krelEsL~~ek 616 (1150)
+--.|..=+.+|..==.-++|+++.-.| +|-.+|...+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998777777777776554 678888888888888877653
No 103
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.51 E-value=1.9e+02 Score=32.13 Aligned_cols=77 Identities=26% Similarity=0.319 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001119 665 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 744 (1150)
Q Consensus 665 ~~L~EREk~FEeek~~EL~~IN~lKE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q 744 (1150)
..++.+-..|+.-+..-++.+.+++..- +=+++..-|+..|..||+ ..-+++-.|+.||..|.+.=..++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~-------~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERM-------AHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888887776654 455555555555555554 45677888899999998888888777
Q ss_pred HHHHH
Q 001119 745 RQLLH 749 (1150)
Q Consensus 745 REll~ 749 (1150)
|....
T Consensus 76 r~~~~ 80 (230)
T PF10146_consen 76 RNKRQ 80 (230)
T ss_pred HHHHH
Confidence 76643
No 104
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.35 E-value=68 Score=36.01 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=66.8
Q ss_pred hhhHHHHH-----HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001119 517 AGELSVLE-----IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDER 591 (1150)
Q Consensus 517 R~E~~~LQ-----~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~ 591 (1150)
|.=+-.|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|++.+.+.-..|+.|.-.+.+.+.++. .|-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHH
Confidence 34445566 789999999999999999999999999999999999999999999999988887665543 466
Q ss_pred hhhHHHHHHHHH
Q 001119 592 DSLRQERDAMRD 603 (1150)
Q Consensus 592 erLK~Ek~~mrd 603 (1150)
.+|+..-+.+.+
T Consensus 194 ~~L~~r~~ELe~ 205 (290)
T COG4026 194 YDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHhcc
Confidence 667766655543
No 105
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=61.92 E-value=3.8e+02 Score=32.90 Aligned_cols=222 Identities=18% Similarity=0.219 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH----------HHHHHHHHhhhHHH
Q 001119 496 LDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE----------KAKFEAEWEMIDEK 565 (1150)
Q Consensus 496 le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~E----------KekFE~EWE~LDEK 565 (1150)
+..=..+|+.--+.|+--..-+...-.....+..-|++++.+-..|..|.+.|++. ...|+++-+.|...
T Consensus 284 ~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~ 363 (569)
T PRK04778 284 NEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQ 363 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444445555566777888888888888888888888776 44444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001119 566 REELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 645 (1150)
Q Consensus 566 R~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~ 645 (1150)
-..+........ .. -.+-...-+.+...++.+..++.+|.+.+. . +
T Consensus 364 ~~~~~~~i~~~~---~~------------ysel~e~leel~e~leeie~eq~ei~e~l~-----------~--------L 409 (569)
T PRK04778 364 YDEITERIAEQE---IA------------YSELQEELEEILKQLEEIEKEQEKLSEMLQ-----------G--------L 409 (569)
T ss_pred HHHHHHHHHcCC---CC------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--------H
Confidence 333322211111 11 111111112222233333333333322222 1 1
Q ss_pred HhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHH
Q 001119 646 EMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWA 725 (1150)
Q Consensus 646 EmqkreLE~~iqkRqEE~E~~L~EREk~FEeek~~EL~~IN~lKE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~a 725 (1150)
+.-|..+.++...+...|. +-.+.-+..++..+=+-.-.-+..+.-++.+|..+......|-...+.+..
T Consensus 410 ----rk~E~eAr~kL~~~~~~L~------~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~ 479 (569)
T PRK04778 410 ----RKDELEAREKLERYRNKLH------EIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLE 479 (569)
T ss_pred ----HHHHHHHHHHHHHHHHHHH------HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 1112223333333333332 223333344555555555555566666677777777777778888888888
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHH
Q 001119 726 ELNNSIEELMVQRQKLEEQRQL---LHADREEIQAESER 761 (1150)
Q Consensus 726 Em~kdIeeL~~ls~KLk~QREl---l~~ERe~f~~~vEk 761 (1150)
+...+++.|..+..-|-+...+ ++..+++|......
T Consensus 480 e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~ 518 (569)
T PRK04778 480 EATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEE 518 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHH
Confidence 8999999988888888887765 44566666554443
No 106
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=61.84 E-value=2.7e+02 Score=31.30 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhH
Q 001119 402 EDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 447 (1150)
Q Consensus 402 eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL 447 (1150)
..+++.-..+++-.+.++...+..+..-+..+..-.++++.-+..+
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666776777777666655555444444444444
No 107
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=61.39 E-value=1.9e+02 Score=32.15 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=55.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 001119 510 LEAMKSEAGELSVLEIKLKEELDVVRAQKL---ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK- 585 (1150)
Q Consensus 510 LkitkeER~E~~~LQ~eLKeEId~~R~Qke---~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek- 585 (1150)
++-.+.=..+|-.+-..|.++++.++.... ++.+|.+.|-+||..+..|--.|..=.-.|+...+....+|.....
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666777777777777665543 3456677777777777766666666666666555555554443322
Q ss_pred --hhhhhhhhhHHHHHHHHHH
Q 001119 586 --SLKDERDSLRQERDAMRDQ 604 (1150)
Q Consensus 586 --~~~~E~erLK~Ek~~mrd~ 604 (1150)
.++.|...||.+-+.||..
T Consensus 83 i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 2234555555555555544
No 108
>PRK09039 hypothetical protein; Validated
Probab=61.26 E-value=3.1e+02 Score=31.76 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=32.9
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001119 502 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 552 (1150)
Q Consensus 502 qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EK 552 (1150)
++..-...|..++..-.+-..-=..|+++|+.+|.|.-.|..+.+.++++-
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344666666666666666667778888888888666666666655544
No 109
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=60.01 E-value=3e+02 Score=31.07 Aligned_cols=90 Identities=23% Similarity=0.295 Sum_probs=55.5
Q ss_pred HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001119 542 MVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMN 621 (1150)
Q Consensus 542 lkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~krelEsL~~ekEsF~~ 621 (1150)
.-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++....
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~~ 170 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 33444444444445555555556666666666666666666666666666666666655543 45667788888888
Q ss_pred hhhhhhhhHHHHHH
Q 001119 622 KMVHEHSEWFTKIQ 635 (1150)
Q Consensus 622 kMehE~s~~~eKiq 635 (1150)
+|.-+=...++++-
T Consensus 171 ~l~~ell~~yeri~ 184 (239)
T COG1579 171 KLDPELLSEYERIR 184 (239)
T ss_pred hcCHHHHHHHHHHH
Confidence 88877666666554
No 110
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=59.09 E-value=2.3e+02 Score=29.63 Aligned_cols=65 Identities=20% Similarity=0.340 Sum_probs=47.2
Q ss_pred HHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhH---------HHHHHHHHhhchHHHHHHHH
Q 001119 170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEE---------KEREIIRERQSLSDRKKILQ 237 (1150)
Q Consensus 170 E~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea---------~E~~i~~QRe~L~EweKkLq 237 (1150)
..|+..|...+.++.++...+.+++.++-. .++.+.-.|..++-. .+..|..+++.+..|+.-+.
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~---~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISE---NIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 455666666777777777777777777754 477777788777533 46678899999999998764
No 111
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=59.05 E-value=1.4e+02 Score=37.45 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=50.5
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001119 506 AKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 577 (1150)
Q Consensus 506 e~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~ 577 (1150)
-...++..+.|-++|.+.=.+||.+|++++.+-..+-.+++ .+.+-.+|-+.+|+.-..|++++..=.
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666667777778888889998888888888776 555667788888888888888876544
No 112
>PLN03188 kinesin-12 family protein; Provisional
Probab=57.88 E-value=4.6e+02 Score=35.83 Aligned_cols=152 Identities=25% Similarity=0.304 Sum_probs=88.1
Q ss_pred HHhhHhhhhhhhhHHHHHHhHHHHHHH-H------HhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHH
Q 001119 110 RKREESLKKTLGVEKECIASLEKAVHE-I------RAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAE 182 (1150)
Q Consensus 110 eKREEnLkKALGvEKqCVadLEKAL~E-m------R~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAE 182 (1150)
+-+-|.|+--|..||.|...|.-||+- | =+-||+.-=..-.=|+--+.++++|. |-|..||.|
T Consensus 1078 r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~------dvkkaaaka---- 1147 (1320)
T PLN03188 1078 RALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID------DVKKAAARA---- 1147 (1320)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh----
Confidence 345578999999999999999999963 2 23333332222222233333333332 223333322
Q ss_pred HhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHH-----------H---HHHHHHHHh
Q 001119 183 ANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQ-----------E---HERLLDAQT 248 (1150)
Q Consensus 183 a~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqq-----------~---eeRL~d~q~ 248 (1150)
-.| ..+ .|=+.+|.+|.-+.-.+-.++|+.|++=-|.||. . ==||-++..
T Consensus 1148 --------g~k-----g~~---~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaee 1211 (1320)
T PLN03188 1148 --------GVR-----GAE---SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEE 1211 (1320)
T ss_pred --------ccc-----cch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 011 2333444444444444445566666665555553 1 124445555
Q ss_pred hhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHHhh
Q 001119 249 LLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 287 (1150)
Q Consensus 249 lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~L~~ 287 (1150)
-+.-=+++++...++-...-|.++.+++|-+.+..+|+.
T Consensus 1212 a~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1212 ALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666788888888888888889899999888888876
No 113
>PRK10698 phage shock protein PspA; Provisional
Probab=55.24 E-value=3.2e+02 Score=29.94 Aligned_cols=121 Identities=21% Similarity=0.312 Sum_probs=87.3
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHH----HHHHHhh
Q 001119 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEA----AELLQKH 97 (1150)
Q Consensus 26 ~iWkr~~eaG---~De~s~~rrD~~-aLia~IskLE~ElfdyQynMGLLLiEkKEw~SK~eqlk~a~~e----ae~~lKR 97 (1150)
.||+||..+. ++..--+--|+. .|--||-.++..|.+-...+.-++-.+|...-+|+++...++. |+.++..
T Consensus 2 ~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~ 81 (222)
T PRK10698 2 GIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRK 81 (222)
T ss_pred CHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4899999875 566666777999 7778999999999999999999999999999999988876653 3333331
Q ss_pred hh-hhhhhHHHH---HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhh
Q 001119 98 DR-ASHLSAIAE---ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKV 146 (1150)
Q Consensus 98 Eq-aAhl~ALsE---aeKREEnLkKALGvEKqCVadLEKAL~EmR~E~AeiK~ 146 (1150)
-. .---.||.+ +..+-..|+..+.....-+..|...++.|+..+.+.|.
T Consensus 82 G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~ 134 (222)
T PRK10698 82 EKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRA 134 (222)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111122222 34455567777777777888888888888888877764
No 114
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=53.56 E-value=2.5e+02 Score=28.17 Aligned_cols=96 Identities=27% Similarity=0.301 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001119 480 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 559 (1150)
Q Consensus 480 Eel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EW 559 (1150)
..+..+...+...+..+..+-.....++++.+.-=---.+-..-=..||++...++.+...|-.+++..+.....-+.-|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444555666666666666666777776644211111111222256777778888888888888888887777777777
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 001119 560 EMIDEKREELRKEAERVAV 578 (1150)
Q Consensus 560 E~LDEKR~el~KEa~~I~e 578 (1150)
+ +-+..|.++...+..
T Consensus 97 ~---~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 97 E---EQKEQLEKELSELEQ 112 (132)
T ss_pred H---HHHHHHHHHHHHHHH
Confidence 6 345555555554443
No 115
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.51 E-value=7.1e+02 Score=33.52 Aligned_cols=200 Identities=20% Similarity=0.265 Sum_probs=121.6
Q ss_pred HHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhh----hhhhhhhhhhhhhHHHHHHHHHh----
Q 001119 92 ELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAE----SAETKVAADSKFAEARCMVENAQ---- 163 (1150)
Q Consensus 92 e~~lKREqaAhl~ALsEaeKREEnLkKALGvEKqCVadLEKAL~EmR~E----~AeiK~tsesKLaEA~aLv~~~e---- 163 (1150)
+...+|..++|- +.+...+=..|.-.+|-..+=|.+||+-..+|-.. +...=-+-++|+..+++.+.-.+
T Consensus 241 ~~~~~~~~~~~~--i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~ 318 (1174)
T KOG0933|consen 241 QAEEKRKNSAHE--IEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLN 318 (1174)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 366777777774 46777788888888888888888888888877652 11111233444444444443332
Q ss_pred ----------hhhHHHHHh-------hhhhHHHHHHH-------hhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHH
Q 001119 164 ----------KKFAEAEAK-------LHAAESLQAEA-------NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKE 219 (1150)
Q Consensus 164 ----------eKslEvE~K-------L~aAeaklAEa-------~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E 219 (1150)
+|.-++... |.+-++..+.+ -+.++...--|...+--=..|.+=..|-..+-..++
T Consensus 319 ~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~ 398 (1174)
T KOG0933|consen 319 LKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLE 398 (1174)
T ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHH
Confidence 222222221 11111111110 000111100111111111122222333333455677
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHHhhhhhhhh
Q 001119 220 REIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 293 (1150)
Q Consensus 220 ~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~L~~ke~dl~ 293 (1150)
..+..-+.++++....+.+..-++-..+.-|..|+-.....++....-.++|+..+.-++.-...|..--.+++
T Consensus 399 ~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~ 472 (1174)
T KOG0933|consen 399 DQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIG 472 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 78888889999999999999999999999999999999999999999999999999988888877766555444
No 116
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=52.62 E-value=4.5e+02 Score=30.98 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhch
Q 001119 151 KFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYH 187 (1150)
Q Consensus 151 KLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~ 187 (1150)
+-..+.....-++....+++.+|..|+..+..--+++
T Consensus 155 ~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 155 KRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444455555555566666666666665554333
No 117
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=52.13 E-value=6.4e+02 Score=32.60 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001119 525 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 575 (1150)
Q Consensus 525 ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~ 575 (1150)
.++.+-|...+.|.+-++++++.|......+-.|.+.+-+.-+.-.-|.++
T Consensus 516 Kk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 516 KKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888999999999999999888888877777766655544444444
No 118
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=48.13 E-value=5.3e+02 Score=30.47 Aligned_cols=16 Identities=19% Similarity=-0.070 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 001119 46 KAALIAYIAKLETEIF 61 (1150)
Q Consensus 46 ~~aLia~IskLE~Elf 61 (1150)
..+|-+.+++|+.++.
T Consensus 106 ~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 106 LDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777777654
No 119
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=47.88 E-value=5.2e+02 Score=30.32 Aligned_cols=206 Identities=26% Similarity=0.325 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH--------------HHHHHHHHHHHHHHHHH
Q 001119 473 SLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS--------------VLEIKLKEELDVVRAQK 538 (1150)
Q Consensus 473 ~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~--------------~LQ~eLKeEId~~R~Qk 538 (1150)
..|++-.+-|..|-.+|++.+.+-..=+..+.+-+++...++.-..++. .=+..|=+-+-.+|.+-
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 4677777788888888888887777777777776655555444433333 12344555556666666
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH---HHHhhhhhhhhh
Q 001119 539 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRD---QHKRDVDSLNRE 615 (1150)
Q Consensus 539 e~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd---~~krelEsL~~e 615 (1150)
.-|..|.+.|++...--..+--+|-++-+..+-....+. ..-+. .|++.|=.....++. ++.+++-++--+
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~-----~~~~~-~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG-----ARHFP-HEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc-----ccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655555555555555444433322221 00011 233333333333332 344555555555
Q ss_pred HHHHHHhhhhhhhhHHHHH---HHHHHHhhhhhHhhhhhhHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001119 616 REEFMNKMVHEHSEWFTKI---QQERADFLLGIEMQKRDLENC-IEKRREELESSFREREKAFEEEKMREFQQISSLKEK 691 (1150)
Q Consensus 616 kEsF~~kMehE~s~~~eKi---q~Erad~l~d~EmqkreLE~~-iqkRqEE~E~~L~EREk~FEeek~~EL~~IN~lKE~ 691 (1150)
+++++ -||+..-.|+ ..|-+.+|.+=+..--+++.- |+| +||++|=+..++|+.---.+|+-.|.+
T Consensus 156 keEl~----~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN------RyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 156 KEELV----TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN------RYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 3555554444 446666666544433334332 333 599999999999999999999988877
Q ss_pred HHH
Q 001119 692 AEK 694 (1150)
Q Consensus 692 a~k 694 (1150)
+.+
T Consensus 226 le~ 228 (319)
T PF09789_consen 226 LER 228 (319)
T ss_pred HHh
Confidence 653
No 120
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=47.50 E-value=59 Score=35.61 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=32.2
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001119 713 INMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERL 762 (1150)
Q Consensus 713 i~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QREll~~ERe~f~~~vEkl 762 (1150)
+..+-+.|..+|.++++....|..-.++|.+-|.+|-+||+.|...+.+.
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~ 85 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQ 85 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666666667777777777776666655443
No 121
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=47.11 E-value=4.7e+02 Score=29.58 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 001119 529 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV-ERVVVSKSLKDERDSLRQERDAMRDQHKR 607 (1150)
Q Consensus 529 eEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~e-Ere~lek~~~~E~erLK~Ek~~mrd~~kr 607 (1150)
+||+++-.|-.++.+....+......||++=+.|--+-++-++.-.+.+. .+-.|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999998888887777777766653 3556777777777777555 56666666
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001119 608 DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 645 (1150)
Q Consensus 608 elEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~ 645 (1150)
+.-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655554 5556666666656666666666555554
No 122
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.39 E-value=4.1e+02 Score=28.62 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=3.3
Q ss_pred HHHHHhhhh
Q 001119 134 VHEIRAESA 142 (1150)
Q Consensus 134 L~EmR~E~A 142 (1150)
|-+.|...+
T Consensus 22 L~~~~~~l~ 30 (302)
T PF10186_consen 22 LLELRSELQ 30 (302)
T ss_pred HHHHHHHHH
Confidence 333333333
No 123
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=45.55 E-value=2.2e+02 Score=37.74 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=6.3
Q ss_pred hheehhhhhhhHHHH
Q 001119 70 LILEKKELASKYEQI 84 (1150)
Q Consensus 70 LLiEkKEw~SK~eql 84 (1150)
+++|-=...+=+..|
T Consensus 91 IVMEY~~gGSL~~lL 105 (1021)
T PTZ00266 91 ILMEFCDAGDLSRNI 105 (1021)
T ss_pred EEEeCCCCCcHHHHH
Confidence 455543333333333
No 124
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.49 E-value=3.5e+02 Score=29.01 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 001119 485 IKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGE 519 (1150)
Q Consensus 485 lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E 519 (1150)
++..++++...++.-...|...+..+..++..|.+
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33334444444444444444444444444444444
No 125
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.47 E-value=3.9e+02 Score=34.32 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=36.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHh
Q 001119 465 EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVE 544 (1150)
Q Consensus 465 EK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkE 544 (1150)
=.+|+.++..++..++++..++.++++.+..++++..++.++++++ +..+..+..+.|...|.+-+.+.++
T Consensus 517 i~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~---------~~~a~~ea~~~~~~a~~~~~~~i~~ 587 (771)
T TIGR01069 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK---------KLELEKEAQEALKALKKEVESIIRE 587 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555554443332 2223334444444445554454444
Q ss_pred hHH
Q 001119 545 TDK 547 (1150)
Q Consensus 545 ae~ 547 (1150)
.-+
T Consensus 588 lk~ 590 (771)
T TIGR01069 588 LKE 590 (771)
T ss_pred HHh
Confidence 443
No 126
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.36 E-value=2.1e+02 Score=26.63 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=49.5
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001119 489 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 565 (1150)
Q Consensus 489 lEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEK 565 (1150)
+++..++=.++..++-.+=++|..++ .++-.-|.++|++-..+.+.+..|+...+..+.+-+.|-++
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~e----------l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKE----------LKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666655544 88888999999999999999999998888888877766543
No 127
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.24 E-value=4.6e+02 Score=28.65 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=25.3
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001119 540 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 594 (1150)
Q Consensus 540 ~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erL 594 (1150)
.|.+|.+.|+......++-=..+....+.|+.....|..-+..+.-++..-.+.|
T Consensus 60 ~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 60 QLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444455555555555555555544444433333
No 128
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=43.57 E-value=4.9e+02 Score=28.76 Aligned_cols=167 Identities=20% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHH---HHHHhhhhHHHHHhhhhh---HHHHHHHhhchhHHhhhHHHHhh
Q 001119 126 CIASLEKAVHEIRAESAETKVAADSKFAEARCM---VENAQKKFAEAEAKLHAA---ESLQAEANRYHRSAERKLQEVVA 199 (1150)
Q Consensus 126 CVadLEKAL~EmR~E~AeiK~tsesKLaEA~aL---v~~~eeKslEvE~KL~aA---eaklAEa~Rk~s~aeRKL~eVEa 199 (1150)
||.||+-.=+.++.|++..|-+-+.=-.....| +.++.....-.=-=++-| +--+..+.---..++-.-.-+-|
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHhHhhhhhhHHHHH---HHHHhhchHHHHHHHHHH----HHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001119 200 REDDLSRRIASFKADCEEKERE---IIRERQSLSDRKKILQQE----HERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1150)
Q Consensus 200 RE~~LrRerlSf~~Erea~E~~---i~~QRe~L~EweKkLqq~----eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLE 272 (1150)
+-..+.|+--|+.++.+.+..+ +.-.++-|...-+-|..+ +--|+..-.++|+|+.-++++.+-...+..-++
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ie 168 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIE 168 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHhcHHHHHHHHhhhhhhh
Q 001119 273 ASRANVEEKFKALNEEKSNL 292 (1150)
Q Consensus 273 eakkkie~~~~~L~~ke~dl 292 (1150)
+....++.-+...-.-+..+
T Consensus 169 Ey~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 169 EYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 129
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.54 E-value=3.5e+02 Score=28.96 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001119 525 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 604 (1150)
Q Consensus 525 ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~ 604 (1150)
.+|+.+|+.++.....|....+.++..|.-. .|-..+-++..+|+++...+..+=.++..+=..--+.++.+.....+.
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777666655 233333334444444444444333333333333344444444444444
Q ss_pred HHhhhhhhhhhHHHHH
Q 001119 605 HKRDVDSLNREREEFM 620 (1150)
Q Consensus 605 ~krelEsL~~ekEsF~ 620 (1150)
..|=-+.+-.-+.-+.
T Consensus 151 anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 151 ANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 4444444443333333
No 130
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=43.48 E-value=6.6e+02 Score=30.24 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=8.2
Q ss_pred cCCCCccccCcCCCCCC
Q 001119 856 HSGENSVENDEEKSPTS 872 (1150)
Q Consensus 856 ~SP~Kk~~~~~e~~~~s 872 (1150)
+||+-++..++-..|+|
T Consensus 421 lspS~~ASSSlt~~pcS 437 (561)
T KOG1103|consen 421 LSPSLPASSSLTPRPCS 437 (561)
T ss_pred cCCCCcccccCCCCCCC
Confidence 45655555554433433
No 131
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=43.44 E-value=4.3e+02 Score=28.05 Aligned_cols=117 Identities=23% Similarity=0.359 Sum_probs=68.3
Q ss_pred HHHHHHHcc---CChHHHhhhcHHHHHH-HHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHH----HHHHHhhh
Q 001119 27 IWKRLKEAG---LDEVSIKRRDKAALIA-YIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEA----AELLQKHD 98 (1150)
Q Consensus 27 iWkr~~eaG---~De~s~~rrD~~aLia-~IskLE~ElfdyQynMGLLLiEkKEw~SK~eqlk~a~~e----ae~~lKRE 98 (1150)
+|+||..+. ++..--+--|+..++. +|-.++..|=...-.++-.+-.++.+.-+|+++...+.. |+.+++.-
T Consensus 2 lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g 81 (221)
T PF04012_consen 2 LFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG 81 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 788888764 4666666678887664 677888888888888888888888888888777765543 33333332
Q ss_pred h--h--hhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhh
Q 001119 99 R--A--SHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAE 143 (1150)
Q Consensus 99 q--a--Ahl~ALsEaeKREEnLkKALGvEKqCVadLEKAL~EmR~E~Ae 143 (1150)
. . ..|.....++..-+.|...+..-..=|..|...|+.|...+.+
T Consensus 82 ~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e 130 (221)
T PF04012_consen 82 REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEE 130 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1222233344444444444444444444444444444444433
No 132
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=43.25 E-value=6.9e+02 Score=30.39 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=10.2
Q ss_pred HhHHHHHHhhhhhhhhhH
Q 001119 705 RLDLERMEINMDRQRRDR 722 (1150)
Q Consensus 705 rLekER~Ei~~~ke~le~ 722 (1150)
.|-.||.-+...-+++..
T Consensus 410 ~l~~ek~al~lqlErl~~ 427 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLET 427 (511)
T ss_pred HHHhhhhhccccHHHHHH
Confidence 555666666665555543
No 133
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.73 E-value=8.1e+02 Score=31.03 Aligned_cols=99 Identities=20% Similarity=0.249 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001119 473 SLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 552 (1150)
Q Consensus 473 ~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EK 552 (1150)
..+...++....|+.|+.|..+.+.+-+..-.+-...| ..|+.||+..=.+-+.|.++.|+|+.+.
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l--------------~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKL--------------EMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666666655544333222222222 2344444444444444444444444432
Q ss_pred HH--H-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001119 553 AK--F-EAEWEMIDEKREELRKEAERVAVERVVVSK 585 (1150)
Q Consensus 553 ek--F-E~EWE~LDEKR~el~KEa~~I~eEre~lek 585 (1150)
++ | -++.+.+--=|.+|.+++.+|.-++..+.+
T Consensus 325 e~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 325 ELQGISGEDVERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1 123333333344444444444444444443
No 134
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.92 E-value=2.7e+02 Score=28.68 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001119 480 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 511 (1150)
Q Consensus 480 Eel~~lK~dlEK~~a~le~qk~qi~ee~E~Lk 511 (1150)
+++..|..+|..++..+..-...+......|.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333333333
No 135
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=41.37 E-value=2.7e+02 Score=27.49 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=12.9
Q ss_pred chhhhhHHhhhhccccc
Q 001119 312 FLFLNLVLICFHVLFTG 328 (1150)
Q Consensus 312 ~~~l~~~~~~~h~l~~~ 328 (1150)
+.||+++++..|+||.+
T Consensus 13 i~flil~~ll~~~l~~p 29 (140)
T PRK07353 13 VQFVLLTFILNALFYKP 29 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788888888888654
No 136
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.18 E-value=4.9e+02 Score=28.03 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 001119 527 LKEELDVVRAQ 537 (1150)
Q Consensus 527 LKeEId~~R~Q 537 (1150)
|...+...|.+
T Consensus 138 l~~~l~~~r~~ 148 (302)
T PF10186_consen 138 LQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHH
Confidence 33333334433
No 137
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=41.11 E-value=4.2e+02 Score=27.23 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=29.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 001119 509 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVET 545 (1150)
Q Consensus 509 ~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEa 545 (1150)
.++.++.|-.+|++|=..|-.-+.+||..-..|=-++
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 4466788999999999999999999998877664444
No 138
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=40.38 E-value=6.8e+02 Score=30.93 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=43.8
Q ss_pred HHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001119 426 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 503 (1150)
Q Consensus 426 l~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi 503 (1150)
+..+.+.++.++-.+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|.+.|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455667777777777788888888888887777776433 22344444444444444444444444555554443
No 139
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=39.70 E-value=1.1e+03 Score=31.85 Aligned_cols=86 Identities=21% Similarity=0.164 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 001119 478 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 557 (1150)
Q Consensus 478 eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~ 557 (1150)
+.+.+..+-.......+..++-.-+|......|.--.-|.+-+.-+-.+||+++-.|=-|-..+..=++.|.+.+-..|.
T Consensus 465 e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ 544 (1195)
T KOG4643|consen 465 ENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEE 544 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44455555555555555666555666666666666666666666666788888888888888888888888888888888
Q ss_pred HHhhhH
Q 001119 558 EWEMID 563 (1150)
Q Consensus 558 EWE~LD 563 (1150)
|-..|=
T Consensus 545 ENa~Ll 550 (1195)
T KOG4643|consen 545 ENAHLL 550 (1195)
T ss_pred HHHHHH
Confidence 877654
No 140
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=39.59 E-value=8.4e+02 Score=30.35 Aligned_cols=107 Identities=20% Similarity=0.254 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 001119 478 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 557 (1150)
Q Consensus 478 eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~ 557 (1150)
+|.++++.-..|+.+++.+... +.+-|.|--.||++||.=--.|++=.+.-|.|. ++|-+|=-
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~-------------LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvs 446 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKH-------------LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVS 446 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH-------------HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHH
Confidence 3344444555555555554433 344566667888999888888887777778876 57888888
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 001119 558 EWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAM 601 (1150)
Q Consensus 558 EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~m 601 (1150)
.|=.+|----.-..|..++...|-.+++-.-+=-++||.||..-
T Consensus 447 qclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~ 490 (527)
T PF15066_consen 447 QCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETR 490 (527)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777765555556777788888888888888888888888753
No 141
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.59 E-value=5.3e+02 Score=33.18 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 001119 483 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVET 545 (1150)
Q Consensus 483 ~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEa 545 (1150)
...+.+++++...+++++.++.+..+.++ ..+.++..+..+|.++.+.++.++..++.++
T Consensus 507 ~~~~~~~~~li~~L~~~~~~~e~~~~~~~---~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a 566 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALEKELEQKNEHLE---KLLKEQEKLKKELEQEMEELKERERNKKLEL 566 (771)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555554444333332 2333444444556666666666655555443
No 142
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=39.38 E-value=5.4e+02 Score=33.09 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=25.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhh
Q 001119 141 SAETKVAADSKFAEARCMVENAQKKFAEAEAKLH 174 (1150)
Q Consensus 141 ~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~ 174 (1150)
..+++=.|..+|...+..+..++....+.-.++.
T Consensus 142 ~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~ 175 (782)
T PRK00409 142 EGEVKDSASEKLRGIRRQLRRKKSRIREKLESII 175 (782)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888887777666555543
No 143
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=39.21 E-value=3.8e+02 Score=33.86 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=10.4
Q ss_pred cccccCchhhhhH
Q 001119 329 NYIKYDSSIECTQ 341 (1150)
Q Consensus 329 ~~~~~~~~~d~~~ 341 (1150)
.|+...+|.+|++
T Consensus 450 GfVTMSts~eAtk 462 (940)
T KOG4661|consen 450 GFVTMSTSAEATK 462 (940)
T ss_pred EEEEecchHHHHH
Confidence 3677788888888
No 144
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.81 E-value=39 Score=36.76 Aligned_cols=55 Identities=29% Similarity=0.492 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccCCCCccccC---cCCCCCCC---Ccccc---------------------------ccccccCCccccc
Q 001119 845 WIKRFADLVFKHSGENSVEND---EEKSPTSD---HEDAS---------------------------LTINSRKRQPVRY 891 (1150)
Q Consensus 845 WlrKCTskIFk~SP~Kk~~~~---~e~~~~s~---~~~~~---------------------------~~~~~~k~q~~ry 891 (1150)
||++.+.+|=+++-=++...| ++-.|+-| |+|.- -++-..+.||.||
T Consensus 69 wLq~~v~kinnlglF~s~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~e~~d~te~~dqp~R~ 148 (224)
T KOG3200|consen 69 WLQYYVDKINNLGLFKSPANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQEVNDGTESKDQPLRY 148 (224)
T ss_pred HHHHHHHHhhcccccCCCcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEecccccccccCCccccCCCCccc
Confidence 999999999877655555566 33333333 44321 1223678899999
Q ss_pred ccC---CCcee
Q 001119 892 SFG---EPKVI 899 (1150)
Q Consensus 892 ~~g---epkvi 899 (1150)
.|- +|++.
T Consensus 149 ~fsllleprsl 159 (224)
T KOG3200|consen 149 LFSLLLEPRSL 159 (224)
T ss_pred eeeeeeccceE
Confidence 997 45543
No 145
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=38.72 E-value=6.7e+02 Score=28.91 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=43.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhh--------------hhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001119 680 REFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMD--------------RQRRDREWAELNNSIEELMVQRQKLEEQ 744 (1150)
Q Consensus 680 ~EL~~IN~lKE~a~kE~Eev~lE~~rLekER~Ei~~~--------------ke~le~e~aEm~kdIeeL~~ls~KLk~Q 744 (1150)
.-|++=|.+=.....||+.|.--+.+|++|....-.- +..++.+..-+.+-|+.|..|-+-|+.+
T Consensus 230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3567778888899999999999999999998765443 3444444444444444444444444443
No 146
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.66 E-value=9e+02 Score=30.38 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=24.8
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHHhh
Q 001119 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 287 (1150)
Q Consensus 250 LNqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~L~~ 287 (1150)
+++|-..+......+.+++++.+.+++..+.-...+.+
T Consensus 364 ~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e 401 (754)
T TIGR01005 364 LKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQ 401 (754)
T ss_pred HHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666777888888888777777665554444
No 147
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.34 E-value=2.1e+02 Score=27.69 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001119 501 KQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 556 (1150)
Q Consensus 501 ~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE 556 (1150)
.+|..+-+-+..++=|-.|+----..|.+|++..|+.+..|..|.+.||++...|.
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555566777777777777777777777777776553
No 148
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=37.24 E-value=6.4e+02 Score=28.31 Aligned_cols=9 Identities=56% Similarity=0.508 Sum_probs=3.4
Q ss_pred HHHhHHHHH
Q 001119 126 CIASLEKAV 134 (1150)
Q Consensus 126 CVadLEKAL 134 (1150)
|.+-+++|+
T Consensus 41 ~~~A~~~A~ 49 (297)
T PF02841_consen 41 NRAAVEKAV 49 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 149
>PF14992 TMCO5: TMCO5 family
Probab=37.13 E-value=7.2e+02 Score=28.85 Aligned_cols=93 Identities=24% Similarity=0.256 Sum_probs=46.1
Q ss_pred HHHHHHHHhHHHHHH----HHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q 001119 345 EREASLQKKEQKLLV----SQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLG 420 (1150)
Q Consensus 345 ~~e~~Le~KEkeLl~----leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~ 420 (1150)
++...|+++++.|.+ |=-|+.++|. .||.| |-|+....-.+++. +..-.-.+.+|.++.
T Consensus 4 sLn~dle~d~Q~ldE~Nq~lL~ki~~~E~-~iq~L---------------e~Eit~~~~~~~~~-e~e~~~~~~~e~~l~ 66 (280)
T PF14992_consen 4 SLNMDLEKDEQRLDEANQSLLQKIQEKEG-AIQSL---------------EREITKMDHIADRS-EEEDIISEERETDLQ 66 (280)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---------------HHHHHHHccccCch-hHHhhhhhchHHHHH
Confidence 344566677766643 2234444442 34444 44555555555444 222222366777776
Q ss_pred hhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhh
Q 001119 421 QREESLLEREHDLEVQSRALVDKEKDLVERSHLL 454 (1150)
Q Consensus 421 h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~L 454 (1150)
..|..-++-|..=+--+..+.+..+.++.+...+
T Consensus 67 ~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 67 ELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 6665444444333333334466666666555543
No 150
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.12 E-value=4.6e+02 Score=29.86 Aligned_cols=139 Identities=12% Similarity=0.171 Sum_probs=74.1
Q ss_pred HHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhH--HHHhhhhhHHHHHHhHhhhhhhHHHH-------HHHHH
Q 001119 155 ARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL--QEVVAREDDLSRRIASFKADCEEKER-------EIIRE 225 (1150)
Q Consensus 155 A~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL--~eVEaRE~~LrRerlSf~~Erea~E~-------~i~~Q 225 (1150)
+..-..-+++...+++.+|..|+..+.+--+++..++=.- .-...--..|+.++....++..+.-. .+...
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l 247 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSL 247 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHH
Confidence 3444555666677777777777777776666654432110 00111122233333333333222211 13333
Q ss_pred hhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHHhhhhhhhhhhHHHh
Q 001119 226 RQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSL 299 (1150)
Q Consensus 226 Re~L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~L~~ke~dl~~rl~~L 299 (1150)
|..+...+..+++...++..+.. ...+.....+..++++++-++...+.....+.+-.-+.......+
T Consensus 248 ~~~i~~l~~~i~~e~~~i~~~~~------~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~~~~~ 315 (362)
T TIGR01010 248 QARIKSLRKQIDEQRNQLSGGLG------DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADRQQLYL 315 (362)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 44455556666665555554321 134556677889999999999988888777776554444444333
No 151
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=36.93 E-value=4.9e+02 Score=26.85 Aligned_cols=118 Identities=22% Similarity=0.215 Sum_probs=56.9
Q ss_pred HHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHH
Q 001119 160 ENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE 239 (1150)
Q Consensus 160 ~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~ 239 (1150)
+.+..+..++++++..++........--..+..|...+|..=+.+.-..-..+.-.+..+.....- --..++++..
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~----E~l~rriq~L 85 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA----EQLNRRIQLL 85 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH----HHHHhhHHHH
Confidence 344455555555555555555555444555555555555555555544444443333333322211 1233344444
Q ss_pred HHHHH-------HHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHH
Q 001119 240 HERLL-------DAQTLLNEREDHILSKLQELSRKEKELEASRANVEEK 281 (1150)
Q Consensus 240 eeRL~-------d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~ 281 (1150)
++.|- ....-|.+-+-++-...+.+..++-+...+..+++.-
T Consensus 86 Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 86 EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444 4444444444555555555555555566666555543
No 152
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.82 E-value=4.9e+02 Score=33.45 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=12.1
Q ss_pred cchhheehhhhhhhHHHHHHHHHHHHHH
Q 001119 67 MGLLILEKKELASKYEQIKASAEAAELL 94 (1150)
Q Consensus 67 MGLLLiEkKEw~SK~eqlk~a~~eae~~ 94 (1150)
||--++..-.....++++...++.+.++
T Consensus 26 ~Gk~~l~~l~P~~~~~~i~~~l~~~~e~ 53 (782)
T PRK00409 26 LGKEKVLQLDPETDFEEVEELLEETDEA 53 (782)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 3433333333344445555444444433
No 153
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=36.41 E-value=3.6e+02 Score=35.93 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=3.3
Q ss_pred ccccccc
Q 001119 325 LFTGNYI 331 (1150)
Q Consensus 325 l~~~~~~ 331 (1150)
|+||.+.
T Consensus 236 LLTGk~P 242 (1021)
T PTZ00266 236 LCSGKTP 242 (1021)
T ss_pred HHHCCCC
Confidence 4455543
No 154
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=35.84 E-value=9.4e+02 Score=29.82 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=10.2
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 001119 344 IEREASLQKKEQKLLVSQ 361 (1150)
Q Consensus 344 ~~~e~~Le~KEkeLl~le 361 (1150)
..++.+.+.||.+..+-.
T Consensus 195 ~~rk~m~D~KEreaeea~ 212 (489)
T PF05262_consen 195 DKRKDMVDIKEREAEEAA 212 (489)
T ss_pred hhhhhhHHHHHHHhHHHH
Confidence 345566677666654433
No 155
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=35.54 E-value=1e+03 Score=30.17 Aligned_cols=428 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHh----------------hhhhHHHHHHhHhhhhhhHHHHHH
Q 001119 159 VENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVV----------------AREDDLSRRIASFKADCEEKEREI 222 (1150)
Q Consensus 159 v~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVE----------------aRE~~LrRerlSf~~Erea~E~~i 222 (1150)
.+..+.|....-..++--..-.-...+.-.+++|+|.++. ..|-.|+.+.-.+..|++.++..+
T Consensus 24 ~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~ql 103 (617)
T PF15070_consen 24 SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQL 103 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHHhhhhhhhhhhHHHhhhh
Q 001119 223 IRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR 302 (1150)
Q Consensus 223 ~~QRe~L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~L~~ke~dl~~rl~~L~~r 302 (1150)
.-|-.+-..+-...++.++||.+..+.|....+..-++.+.|...+-+-..+...+ .-+..||+.-..+...+..||-.
T Consensus 104 qaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAl-sQN~eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 104 QAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRAL-SQNRELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH-HhHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhhhccccchhhhhHHhhhhccccccccccCchhhhhHHHH-HHHHHHHHhHHHHHHHHHHHhhhhhHHHHHHHHHhHH
Q 001119 303 EEVYTISFPFLFLNLVLICFHVLFTGNYIKYDSSIECTQAVI-EREASLQKKEQKLLVSQETLASKESNEIQKIIANHES 381 (1150)
Q Consensus 303 Eee~t~~~~~~~l~~~~~~~h~l~~~~~~~~~~~~d~~~~~~-~~e~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a 381 (1150)
=-++ .|...+-+-|. ++...|..-+.+|..+.++|..+.. +++.|-. ++.
T Consensus 183 ~~el---------------------------t~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~q-E~~~Lq~-q~d 233 (617)
T PF15070_consen 183 NMEL---------------------------TSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQ-EAQSLQE-QRD 233 (617)
T ss_pred hhHh---------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHH-HHH
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhh
Q 001119 382 ALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKL 461 (1150)
Q Consensus 382 ~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL 461 (1150)
.+..-.+...+. +-.+..+-+.=-..+-+.-.-+...--.-.+---.++.....|.+..-.|.+-+..-..-...|
T Consensus 234 q~~~~Lqqy~a~----~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~ql 309 (617)
T PF15070_consen 234 QYLGHLQQYVAA----YQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQL 309 (617)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001119 462 IAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLEL 541 (1150)
Q Consensus 462 ~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~L 541 (1150)
...--..+..-......-++.-.....|-.-+.+-++-..=++.+...+..-. ..|..+++.-|.+-..|
T Consensus 310 s~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr----------~~L~~qL~eqk~~~q~L 379 (617)
T PF15070_consen 310 SLMALPGEGDGLESESEEEEAPQPMPSIPEDLESREAMVEFFNSALAQAEEER----------ARLRRQLEEQKVQCQHL 379 (617)
T ss_pred HhhcCCCCCcccccccccccccCcCcccccccccHHHHHHHHHHHHhhHHHHH----------HHHHHHHHHHHHHHHHh
Q ss_pred HHhhHHHHHHHHHHH-------------------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 001119 542 MVETDKLQLEKAKFE-------------------AEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMR 602 (1150)
Q Consensus 542 lkEae~Lk~EKekFE-------------------~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mr 602 (1150)
..-+..++.+-..=- .=++-|..+-..+.+|--++.++.++|+-... .|--|-+.+.
T Consensus 380 ~h~va~~q~e~e~~a~~~~~~~dsV~~E~h~aLq~amekLq~~f~~~~~e~adl~e~~e~le~~~~----ql~~et~ti~ 455 (617)
T PF15070_consen 380 AHQVASAQKEPEAEAPAPGTGGDSVPGETHQALQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFI----QLSGETDTIG 455 (617)
T ss_pred hhccccccccccccccCcccCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HhccCccchh
Q ss_pred HH---HHhhhhhhh---hhHHHHHHhhhhhhhhHHHHH
Q 001119 603 DQ---HKRDVDSLN---REREEFMNKMVHEHSEWFTKI 634 (1150)
Q Consensus 603 d~---~krelEsL~---~ekEsF~~kMehE~s~~~eKi 634 (1150)
.| |+..---++ .+++.++..|.++|-.+--|+
T Consensus 456 eyi~ly~~qr~~~k~r~~e~~~~i~~l~~~~e~mk~kl 493 (617)
T PF15070_consen 456 EYITLYQSQRAVLKQRHQEKEEYISRLAQDREEMKVKL 493 (617)
T ss_pred hhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
No 156
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.85 E-value=2.8e+02 Score=30.93 Aligned_cols=57 Identities=28% Similarity=0.393 Sum_probs=42.5
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001119 541 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 608 (1150)
Q Consensus 541 LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~kre 608 (1150)
+.++.+.|+.+-++=..+-+-.+.+...+.|..+.+. +|.|||..+-..+|+++...
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~-----------~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ-----------DEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhcc
Confidence 3445555555556666667777778888888887777 89999999999999998653
No 157
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.26 E-value=9.5e+02 Score=29.37 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q 001119 468 ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDK 547 (1150)
Q Consensus 468 le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~ 547 (1150)
+-.....|.++...|...+..|+--++.+....-.....+.+|..+..|+.. +..+|-.++..-+...++|-+.+..
T Consensus 159 ~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~ 235 (420)
T COG4942 159 RAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESR 235 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333555666666666666666666666666666666677777777766654 4467777777778888888888888
Q ss_pred HHHHHHHHHHH
Q 001119 548 LQLEKAKFEAE 558 (1150)
Q Consensus 548 Lk~EKekFE~E 558 (1150)
|+.+.++-|.+
T Consensus 236 L~~~Ias~e~~ 246 (420)
T COG4942 236 LKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 158
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.12 E-value=6.5e+02 Score=27.41 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001119 597 ERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 645 (1150)
Q Consensus 597 Ek~~mrd~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~ 645 (1150)
.-...++.|+.-++.|..-+..|+..|.. =-..|-.+..+|-+|+.++
T Consensus 168 ~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 168 SAEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34557889999999999999999999985 3344455666777777654
No 159
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=34.06 E-value=98 Score=30.52 Aligned_cols=68 Identities=29% Similarity=0.266 Sum_probs=46.9
Q ss_pred hhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhH
Q 001119 119 TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1150)
Q Consensus 119 ALGvEKqCVadLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~ 189 (1150)
.|.-|+.=...+|.....|-.|.-+. +-+=|.+||.||+.+..-...++.|...++..+.|+...-..
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeL---TasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~ 69 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEEL---TASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLES 69 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566777777777777662 345679999999998887777887777766666665544333
No 160
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=32.74 E-value=4e+02 Score=27.23 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred chhhhhHHhhhhccccccccccCchhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhhh---------------------hH
Q 001119 312 FLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQETLASKE---------------------SN 370 (1150)
Q Consensus 312 ~~~l~~~~~~~h~l~~~~~~~~~~~~d~~~~~~~~e~~Le~KEkeLl~leEKL~aRE---------------------~~ 370 (1150)
+.||.++++..+++|.. +...++.-+ ..-...++.-++-....+..+..-+ ..
T Consensus 30 inFliL~~lL~k~l~~P----i~~~l~~R~--~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~ 103 (156)
T CHL00118 30 LQFLLLMVLLNIILYKP----LLKVLDERK--EYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKE 103 (156)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHH
Q 001119 371 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAW 412 (1150)
Q Consensus 371 EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~ 412 (1150)
..+.+++.-+...+....++..+++..+...-.+++..+..+
T Consensus 104 ~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~l 145 (156)
T CHL00118 104 IVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTL 145 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 161
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=32.32 E-value=1e+03 Score=29.18 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=12.2
Q ss_pred hhhhhhhhhhHHHhhhhhhhh
Q 001119 286 NEEKSNLDLTLVSLLKREEVY 306 (1150)
Q Consensus 286 ~~ke~dl~~rl~~L~~rEee~ 306 (1150)
......|+.+.-.++.|++.+
T Consensus 234 ~qrd~~i~q~~q~iaar~e~I 254 (499)
T COG4372 234 QQRDAQISQKAQQIAARAEQI 254 (499)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 333444555666666677666
No 162
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=31.89 E-value=1e+03 Score=29.12 Aligned_cols=138 Identities=17% Similarity=0.290 Sum_probs=75.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhH----HHHHHHhhchhHHhhhHHHHhhhhhHHH--
Q 001119 132 KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAE----SLQAEANRYHRSAERKLQEVVAREDDLS-- 205 (1150)
Q Consensus 132 KAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAe----aklAEa~Rk~s~aeRKL~eVEaRE~~Lr-- 205 (1150)
..|+.||.+.|-++-++.+-.++-..-|.++-.|...+=. .++. |--|=++.-+..+......+-++=|+||
T Consensus 155 ~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~--~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~ 232 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS--SSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDI 232 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666665544322 1111 1111111222222222222222222222
Q ss_pred -----------------HHHhHhhhhhhHHHHHHHHHhhchH----HHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHH
Q 001119 206 -----------------RRIASFKADCEEKEREIIRERQSLS----DRKKILQQEHERLLDAQTLLNEREDHILSKLQEL 264 (1150)
Q Consensus 206 -----------------RerlSf~~Erea~E~~i~~QRe~L~----EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l 264 (1150)
++.-+...|..+..+++.+..+.+. -|.|+-..+=+.+|+.|..||--|+-+..
T Consensus 233 vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~D----- 307 (426)
T smart00806 233 IEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIAD----- 307 (426)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 2334445555666666665555554 48888888889999999999998887654
Q ss_pred hHhHHHHHHHHhcH
Q 001119 265 SRKEKELEASRANV 278 (1150)
Q Consensus 265 ~~kEkeLEeakkki 278 (1150)
++.+|+.+....
T Consensus 308 --L~dDL~ka~eTf 319 (426)
T smart00806 308 --LKEDLEKAEETF 319 (426)
T ss_pred --HHHHHHHHHHHH
Confidence 455565554444
No 163
>PRK11281 hypothetical protein; Provisional
Probab=31.50 E-value=1.5e+03 Score=30.83 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=39.0
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001119 218 KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1150)
Q Consensus 218 ~E~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLE 272 (1150)
.|..+..-...|.+|+..|.+....|...|...-..-..+.++.+.+.+....|.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666676677788888888887777777776666666666666666666666663
No 164
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.45 E-value=8.6e+02 Score=28.04 Aligned_cols=119 Identities=20% Similarity=0.280 Sum_probs=77.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHh---------------hhhHHHHhhhhHHH-
Q 001119 394 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDK---------------EKDLVERSHLLEEK- 457 (1150)
Q Consensus 394 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEK---------------EkdL~~Ksk~LKEk- 457 (1150)
+-.++.++++++..=-..+.+-+.+|...++-|.+|..-|..+.|.+-.= =.||-+|+.++..-
T Consensus 64 ~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv 143 (265)
T COG3883 64 IQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIV 143 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 34566677777777677777777788888888888888888888876321 14666666666432
Q ss_pred ------HhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001119 458 ------ENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 512 (1150)
Q Consensus 458 ------EksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~Lki 512 (1150)
=+..+..++.|+..+..+....+.+.-+..+++..+..|+.++....-..-.++.
T Consensus 144 ~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa 204 (265)
T COG3883 144 DADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAA 204 (265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334556666666677777777777777777777777766666554444433333
No 165
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=30.43 E-value=5.5e+02 Score=26.51 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=48.4
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001119 678 KMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQA 757 (1150)
Q Consensus 678 k~~EL~~IN~lKE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QREll~~ERe~f~~ 757 (1150)
|+.=+..+......+..||+++.++.+|+.+|-.-.+. ..+..++..+...|..+..-+..++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~----------------~~~~~i~~q~~~e~~~r~e~k~~l~~ 81 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA----------------QQIQSIQQQFEQEKQERLEQKNQLLQ 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666777888889999999999999888554443 33444555566666666666666666
Q ss_pred HHHHhhhhh
Q 001119 758 ESERLKKLE 766 (1150)
Q Consensus 758 ~vEklK~ck 766 (1150)
+++++..++
T Consensus 82 ql~qv~~L~ 90 (131)
T PF11068_consen 82 QLEQVQKLE 90 (131)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHhcCC
Confidence 666666554
No 166
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.21 E-value=5.2e+02 Score=25.18 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001119 520 LSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 581 (1150)
Q Consensus 520 ~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre 581 (1150)
|..|+++.++=||.+ ..|.-|+++||.+......|-..+-.-|.+|..+...+..++-
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456888888888876 4677788888876666655555555555555555444444443
No 167
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.18 E-value=5.4e+02 Score=28.24 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHH
Q 001119 527 LKEELDVVRAQKLELMVETDKLQ 549 (1150)
Q Consensus 527 LKeEId~~R~Qke~LlkEae~Lk 549 (1150)
|++++...+.+-..|-++.++++
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 168
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=30.01 E-value=7e+02 Score=26.51 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=35.2
Q ss_pred HHHHHhhhhhHHHhHHHHHHhhhhHHHHhh-------hhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001119 423 EESLLEREHDLEVQSRALVDKEKDLVERSH-------LLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSS 495 (1150)
Q Consensus 423 Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk-------~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~ 495 (1150)
|+..-...++|..+...|.+-.+-|..+++ .|.+.|-.|+...+.+ -..+++-+..++.-+++.+..
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l------~er~~e~l~~~~e~ver~k~~ 157 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL------HERERELLRKLKEHVERQKDE 157 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhc
Confidence 333334444444444444444444444444 4445555554444444 345666777777777777654
No 169
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.87 E-value=1.3e+03 Score=29.46 Aligned_cols=86 Identities=26% Similarity=0.340 Sum_probs=50.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHh
Q 001119 465 EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVE 544 (1150)
Q Consensus 465 EK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkE 544 (1150)
++.|+.-+..+..--++++.++...-.++..++.| +---+..+-|..|| -+|+++++++-.+.+.|+++
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q----~iS~~dve~mn~Er-------~~l~r~l~~i~~~~d~l~k~ 361 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ----GISGEDVERMNLER-------NKLKRELNKIQSELDRLSKE 361 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34443333333333344444444444444444443 11123344455555 46889999999999999999
Q ss_pred hHHHHHHHHHHHHHHhh
Q 001119 545 TDKLQLEKAKFEAEWEM 561 (1150)
Q Consensus 545 ae~Lk~EKekFE~EWE~ 561 (1150)
+=+++-+-+.|=++-+.
T Consensus 362 vw~~~l~~~~~f~~le~ 378 (581)
T KOG0995|consen 362 VWELKLEIEDFFKELEK 378 (581)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 99999988888665544
No 170
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.69 E-value=4.4e+02 Score=30.24 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=68.5
Q ss_pred HhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHHHHHH
Q 001119 450 RSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELSVLEI 525 (1150)
Q Consensus 450 Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER----~E~~~LQ~ 525 (1150)
+--.+.+-|+.|+..=+.+ ..++++=+..+.++..|--.+-+-|+.++..+...+.+|..+++=| +||-.|+.
T Consensus 156 r~~e~~~iE~~l~~ai~~~---~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~ 232 (267)
T PF10234_consen 156 RPLELNEIEKALKEAIKAV---QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEE 232 (267)
T ss_pred CCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3344556666776666666 4555555667777788877777888888888889999999999887 78999999
Q ss_pred HHHHHHHHHHHHH---HHhHHhhHHH
Q 001119 526 KLKEELDVVRAQK---LELMVETDKL 548 (1150)
Q Consensus 526 eLKeEId~~R~Qk---e~LlkEae~L 548 (1150)
+|++--+.|=..- ..|..+.|+.
T Consensus 233 EL~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 233 ELQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999877764432 3444444443
No 171
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.88 E-value=1e+03 Score=28.08 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhH
Q 001119 730 SIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLK 769 (1150)
Q Consensus 730 dIeeL~~ls~KLk~QREll~~ERe~f~~~vEklK~ckncg 769 (1150)
|||.|-+=.+-|+++=.++..|++=...-+-++|+.=+|+
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERK 229 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999876664
No 172
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=28.45 E-value=4.8e+02 Score=24.16 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=19.5
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH
Q 001119 622 KMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS 666 (1150)
Q Consensus 622 kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEE~E~~ 666 (1150)
.+..+=..+...+...+..|+..++-...+....|......++..
T Consensus 43 ~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~ 87 (127)
T smart00502 43 QIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQK 87 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444433
No 173
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.97 E-value=5.4e+02 Score=30.42 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=33.4
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001119 433 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKS 487 (1150)
Q Consensus 433 Le~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~ 487 (1150)
+..+-..|++.|++|-+|+..||.-- .-+.++|+.++.+|..|.-.++.-|+
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr~h---~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKRLH---QEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667788888888887776532 23345677777777777666655444
No 174
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.67 E-value=4.1e+02 Score=29.11 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHHhhhhhhh
Q 001119 241 ERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 292 (1150)
Q Consensus 241 eRL~d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~L~~ke~dl 292 (1150)
++..+.|..+++++..+++......++..+|+.++.+++.....+...++++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666667777777888888888888888888888766555555544444
No 175
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=26.96 E-value=2.3e+02 Score=28.53 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=18.2
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhh
Q 001119 127 IASLEKAVHEIRAESAETKVAAD 149 (1150)
Q Consensus 127 VadLEKAL~EmR~E~AeiK~tse 149 (1150)
|+-|++||.++++.|...+..++
T Consensus 45 v~GLe~AL~~v~~~Ctd~~l~~e 67 (115)
T PF06476_consen 45 VAGLEKALEEVKAHCTDEGLKAE 67 (115)
T ss_pred HHHHHHHHHHHHhhcCCchhhHH
Confidence 66799999999999987654433
No 176
>PRK11519 tyrosine kinase; Provisional
Probab=26.94 E-value=1.1e+03 Score=29.90 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=35.2
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhH
Q 001119 145 KVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1150)
Q Consensus 145 K~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~ 189 (1150)
....+.|...|..-++-+++...++..+|..|+..++.--+.+..
T Consensus 255 ~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 255 EQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 355667888888888888888888888888888888777666543
No 177
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.22 E-value=1.3e+03 Score=28.33 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=22.8
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001119 535 RAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEA 573 (1150)
Q Consensus 535 R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa 573 (1150)
+.+...|.+..-.|...++..+.|=..|+....+...+.
T Consensus 160 ~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~ 198 (420)
T COG4942 160 AERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQ 198 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666677777766666655555554444333
No 178
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.07 E-value=1.3e+03 Score=30.53 Aligned_cols=99 Identities=24% Similarity=0.303 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhh
Q 001119 548 LQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEH 627 (1150)
Q Consensus 548 Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~krelEsL~~ekEsF~~kMehE~ 627 (1150)
|+.+..--.+.-|+|--|.++|-|..+...+|-.+|.+.++.=...|+. .+.+|.-+...++++=++-+.+|++=+
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~----~kq~~d~e~~rik~ev~eal~~~k~~q 514 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE----NKQQFDIETTRIKIEVEEALVNVKSLQ 514 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455667777788888888888888888887777655544444 345566666778888888888887544
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhhhH
Q 001119 628 SEWFTKIQQERADFLLGIEMQKRDLE 653 (1150)
Q Consensus 628 s~~~eKiq~Erad~l~d~EmqkreLE 653 (1150)
|.-...|...++++|.++-|+-|
T Consensus 515 ---~kLe~sekEN~iL~itlrQrDaE 537 (861)
T PF15254_consen 515 ---FKLEASEKENQILGITLRQRDAE 537 (861)
T ss_pred ---hhHHHHHhhhhHhhhHHHHHHHH
Confidence 33445677777888877776655
No 179
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=25.61 E-value=6.3e+02 Score=31.53 Aligned_cols=103 Identities=20% Similarity=0.242 Sum_probs=64.9
Q ss_pred hHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001119 193 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1150)
Q Consensus 193 KL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLE 272 (1150)
..-|.++||+.++ .+|....+.+-..+..-.--..-.....+-...||.-+........+.+.+..+.+.+++.+|+
T Consensus 403 ~~~E~esRE~LIk---~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 403 ESPEEESREQLIK---SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred cCCchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788875533 2333333333333222222222233333444455555555555666778888889999999999
Q ss_pred HHHhcHHHHHHHHhhhhhhhhhhHHH
Q 001119 273 ASRANVEEKFKALNEEKSNLDLTLVS 298 (1150)
Q Consensus 273 eakkkie~~~~~L~~ke~dl~~rl~~ 298 (1150)
..+.+-+..+.++-+--..++.+|+.
T Consensus 480 TTr~NYE~QLs~MSEHLasmNeqL~~ 505 (518)
T PF10212_consen 480 TTRRNYEEQLSMMSEHLASMNEQLAK 505 (518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887777766654
No 180
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=25.60 E-value=1.7e+03 Score=29.46 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHH--hHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001119 401 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEV--QSRALVDKEKDLVERSHLLEEKENKLI 462 (1150)
Q Consensus 401 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~--k~~~lkEKEkdL~~Ksk~LKEkEksL~ 462 (1150)
++++|.+|..++-+-+--+...-+.+.--|..|-. +++++-+.|-.|..+.+++---+...-
T Consensus 96 lE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~ 159 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSG 159 (916)
T ss_pred HHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhc
Confidence 34455555555544443333333333333333322 266777777778777777654444333
No 181
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.69 E-value=6.3e+02 Score=26.75 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHHhhhh
Q 001119 216 EEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEK 289 (1150)
Q Consensus 216 ea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~L~~ke 289 (1150)
.+.+..+...|++|.+-.|.--+...+|.+...-|...+..+.+....+..++.++..++.+|..-...|+++.
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888887777777754444444443
No 182
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=24.12 E-value=1e+03 Score=26.51 Aligned_cols=105 Identities=22% Similarity=0.247 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHh
Q 001119 130 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIA 209 (1150)
Q Consensus 130 LEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerl 209 (1150)
|+-++++|+.++++++-+.-.=++....+-..+..=...++.=-.-|...+.-.+ +-=||+-. -++.
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~-----------E~LAr~al--~~~~ 95 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN-----------EDLAREAL--EEKQ 95 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHH--HHHH
Confidence 6778888888888877776666666655555444443333333333333222222 22222211 2344
Q ss_pred HhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 001119 210 SFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (1150)
Q Consensus 210 Sf~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q 247 (1150)
++..-+.+++..+..+++.+-..++.+...+..+.+..
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~ 133 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELR 133 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666676666666666666666666666555544
No 183
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=24.08 E-value=1.8e+03 Score=29.39 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHhhHhhhhhhhhHHHHHHhHHHH-----------HHHHHhhhhhhhhhhhhhhhHHHHHHHHHh
Q 001119 107 AEARKREESLKKTLGVEKECIASLEKA-----------VHEIRAESAETKVAADSKFAEARCMVENAQ 163 (1150)
Q Consensus 107 sEaeKREEnLkKALGvEKqCVadLEKA-----------L~EmR~E~AeiK~tsesKLaEA~aLv~~~e 163 (1150)
+....|.+=|.+.+|++.-. .+... +..++.....+-..++..++....-+..+.
T Consensus 164 a~~~eR~~il~~l~g~~~y~--~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~~~~~l~ 229 (1047)
T PRK10246 164 AKPKERAELLEELTGTEIYG--QISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLT 229 (1047)
T ss_pred CChHHHHHHHHHHhCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence 35678999999999999854 34444 445555555444444444444444333333
No 184
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.82 E-value=95 Score=33.10 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=2.5
Q ss_pred HHHHHHHHHhHHhhHHHH
Q 001119 532 DVVRAQKLELMVETDKLQ 549 (1150)
Q Consensus 532 d~~R~Qke~LlkEae~Lk 549 (1150)
+.+|..-+-|..|+-|||
T Consensus 27 E~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 185
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.64 E-value=2.7e+02 Score=25.85 Aligned_cols=54 Identities=9% Similarity=0.270 Sum_probs=45.9
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhH
Q 001119 124 KECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAE 177 (1150)
Q Consensus 124 KqCVadLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAe 177 (1150)
+.++..+.+.+..|+.+...+.--...-+..+|.+.++++.|...+..=..++.
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~ 78 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVA 78 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 678899999999999999999988889999999999998888877766555543
No 186
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=23.05 E-value=68 Score=31.19 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=48.2
Q ss_pred chhhhhHHhhhhccccccccccCchhhhhHHHHHHHHHHHHhHHHHHHHHHHHhh------hhhHHHHHHHHHhHH--HH
Q 001119 312 FLFLNLVLICFHVLFTGNYIKYDSSIECTQAVIEREASLQKKEQKLLVSQETLAS------KESNEIQKIIANHES--AL 383 (1150)
Q Consensus 312 ~~~l~~~~~~~h~l~~~~~~~~~~~~d~~~~~~~~e~~Le~KEkeLl~leEKL~a------RE~~EIQKLldeh~a--~L 383 (1150)
++.|=+.-+|+=+||||.+..+..+-+... ......+.++....+-+.. ..+.-+..+-+-|.+ .|
T Consensus 5 ~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~------~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~aIq~L 78 (95)
T PF13334_consen 5 VLLLCIASFCAGMLFTNRMWTVPESKEISR------RSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHEAIQSL 78 (95)
T ss_pred HHHHHHHHHHHHHHHhcccccCCccccchh------hhccccccccccccccccccccccCCccchhHHHHHHHHHHHHH
Confidence 456666777889999999876654333222 2222333344333222221 223344455555644 58
Q ss_pred hhhhhhHHHHHHHHhh
Q 001119 384 RVKQSEFEAELAIKYK 399 (1150)
Q Consensus 384 ~~Kk~EFElElE~krK 399 (1150)
|.+...+|+||.--|.
T Consensus 79 dKtIS~LEMELAaARa 94 (95)
T PF13334_consen 79 DKTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987764
No 187
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=22.92 E-value=1.8e+03 Score=28.86 Aligned_cols=124 Identities=23% Similarity=0.351 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-----HHhhHHHH
Q 001119 475 LQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLEL-----MVETDKLQ 549 (1150)
Q Consensus 475 L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~L-----lkEae~Lk 549 (1150)
.++|.+.+..+..++-+....++.+..++..+...++.-+ .-++.==++|.+ +++=.||..- ..|-|-||
T Consensus 53 ~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE---~rll~dyselEe--ENislQKqvs~Lk~sQvefE~~K 127 (717)
T PF09730_consen 53 VQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFRE---ARLLQDYSELEE--ENISLQKQVSVLKQSQVEFEGLK 127 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHH--HHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444555555555544444444444433333333222 111111123322 3344444322 34555555
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001119 550 LEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 611 (1150)
Q Consensus 550 ~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~krelEs 611 (1150)
-+..+++.|-+.|--. ++.+..-|+--++.+-.=-+.|+.|++. +..++++|+.
T Consensus 128 hei~rl~Ee~~~l~~q-------lee~~rLk~iae~qleEALesl~~EReq-k~~LrkEL~~ 181 (717)
T PF09730_consen 128 HEIKRLEEEIELLNSQ-------LEEAARLKEIAEKQLEEALESLKSEREQ-KNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5555555555555433 3333444444445555455666666543 5566777766
No 188
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.16 E-value=5.8e+02 Score=31.76 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001119 472 KSLLQKEKEEVNIIKSDLQKSLSSLD 497 (1150)
Q Consensus 472 K~~L~~eKEel~~lK~dlEK~~a~le 497 (1150)
+..+.++++.+..++.+++..+..+.
T Consensus 225 k~e~~~~~~~i~~~~~~l~~~~~~~~ 250 (555)
T TIGR03545 225 KKEGKADKQKIKSAKNDLQNDKKQLK 250 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444444444444444444433333
No 189
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.13 E-value=5e+02 Score=27.22 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001119 525 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 559 (1150)
Q Consensus 525 ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EW 559 (1150)
.++++||+++..+-....+|++.||.|-+.+.+|.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666777777776778888888888888888774
No 190
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.91 E-value=1.3e+03 Score=26.82 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=34.3
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhH
Q 001119 146 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1150)
Q Consensus 146 ~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~ 189 (1150)
...+.|...+.....-+++...++..+|.+|+..+..--+.+.-
T Consensus 160 ~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 160 TNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45566777777888888888888888888888888877766544
No 191
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.79 E-value=1.3e+03 Score=26.83 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001119 478 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 512 (1150)
Q Consensus 478 eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~Lki 512 (1150)
|-+++..++..|.+....++....++.+-++.|..
T Consensus 202 d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~ 236 (312)
T smart00787 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQE 236 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 192
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=21.65 E-value=1.2e+03 Score=26.25 Aligned_cols=119 Identities=26% Similarity=0.373 Sum_probs=68.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHH
Q 001119 345 EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREE 424 (1150)
Q Consensus 345 ~~e~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Ee 424 (1150)
.--..|-++|.+|-..+++..+-|+.-. .|.. ++ +-+...+++ |...++
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~Es~~~-eLeE---------------e~----~~~~~nlk~-----------l~~~ee 133 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAESQSE-ELEE---------------DL----RILDSNLKS-----------LSAKEE 133 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHH---------------HH----HHhHhHHHH-----------HHHHHH
Confidence 3347788999999998888887775321 1111 11 111222222 334455
Q ss_pred HHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001119 425 SLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 497 (1150)
Q Consensus 425 kl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le 497 (1150)
++..++-..+.+.+.+.+|=+.-+.+-... |++....+|.++.=-..|...++....++.+|..+..+++
T Consensus 134 ~~~q~~d~~e~~ik~ltdKLkEaE~rAE~a---ERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 134 KLEQKEEKYEEELKELTDKLKEAETRAEFA---ERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666666666666666555555554444 3566666666655555666666666677777766666554
No 193
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=21.57 E-value=1.5e+03 Score=27.56 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhh
Q 001119 753 EEIQAESERLKKL 765 (1150)
Q Consensus 753 e~f~~~vEklK~c 765 (1150)
.-|...+..|+.|
T Consensus 430 ~p~~~el~~l~~~ 442 (582)
T PF09731_consen 430 RPFEDELRALKEL 442 (582)
T ss_pred CCHHHHHHHHHHh
Confidence 4455555555555
No 194
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.33 E-value=1.3e+03 Score=27.47 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=62.5
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHH
Q 001119 395 AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSL 474 (1150)
Q Consensus 395 E~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~ 474 (1150)
.+-++++..-+..-..-+.+--.+|+.-=++|..||.-|+.+++-+...=+....+++.++++=+.. -..+......
T Consensus 226 ~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~---s~~V~~~t~~ 302 (359)
T PF10498_consen 226 KQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQA---SEGVSERTRE 302 (359)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHH
Confidence 3445666777777777777888888888899999999999998888777555555555555444333 3333333444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH
Q 001119 475 LQKEKEEVNIIKSDLQKSLSSLD 497 (1150)
Q Consensus 475 L~~eKEel~~lK~dlEK~~a~le 497 (1150)
|..=-+++...|.+++.--+++.
T Consensus 303 L~~IseeLe~vK~emeerg~~mt 325 (359)
T PF10498_consen 303 LAEISEELEQVKQEMEERGSSMT 325 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Confidence 44444445555555544444433
No 195
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.06 E-value=7.6e+02 Score=23.86 Aligned_cols=64 Identities=23% Similarity=0.485 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001119 521 SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDA 600 (1150)
Q Consensus 521 ~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~ 600 (1150)
-.|+.+.++-||.+- .|.-|+++|| ||...|+.|.-.....|++|++ |-+.||+|-.+
T Consensus 7 ekLE~KiqqAvdTI~----LLQmEieELK--------------Eknn~l~~e~q~~q~~reaL~~----eneqlk~e~~~ 64 (79)
T COG3074 7 EKLEAKVQQAIDTIT----LLQMEIEELK--------------EKNNSLSQEVQNAQHQREALER----ENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHH--------------HHhhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 467888999998874 4555565554 6777788888888888888763 67778888777
Q ss_pred HHHHHH
Q 001119 601 MRDQHK 606 (1150)
Q Consensus 601 mrd~~k 606 (1150)
-++.+.
T Consensus 65 WQerlr 70 (79)
T COG3074 65 WQERLR 70 (79)
T ss_pred HHHHHH
Confidence 666554
No 196
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.49 E-value=9.9e+02 Score=28.31 Aligned_cols=99 Identities=14% Similarity=0.340 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHH
Q 001119 152 FAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSD 231 (1150)
Q Consensus 152 LaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~E 231 (1150)
|..++.+..+|..-+.++-..| .|-+.++.+-|..+.+||.-|-.+.-....
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L----------~kl~~~i~~~lekI~sREk~iN~qle~l~~------------------ 273 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQL----------DKLQQDISKTLEKIESREKYINNQLEPLIQ------------------ 273 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------------------
Confidence 5667777777777776665544 346777778888888888766544333322
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHH
Q 001119 232 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEK 281 (1150)
Q Consensus 232 weKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~ 281 (1150)
.+...+.+|.+.+.-.++....+.++.+.|.+.-.+||..|..++..
T Consensus 274 ---eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 274 ---EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677778888888888888888889998888898888887654
No 197
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=20.45 E-value=8.9e+02 Score=28.04 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=45.1
Q ss_pred hccchhheehhhhhhhHHHHHHH------------HHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHH
Q 001119 65 HHMGLLILEKKELASKYEQIKAS------------AEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 132 (1150)
Q Consensus 65 ynMGLLLiEkKEw~SK~eqlk~a------------~~eae~~lKREqaAhl~ALsEaeKREEnLkKALGvEKqCVadLEK 132 (1150)
-..+||++.=|-++..|++.... +.-..+-+.+-.+---..|+-+.-+.+.||..|+.|++|..+-.-
T Consensus 52 ~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqq 131 (268)
T PF11802_consen 52 AQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQ 131 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665432 222333333334444456777788888888888888888766444
Q ss_pred HHHHHHhhhh
Q 001119 133 AVHEIRAESA 142 (1150)
Q Consensus 133 AL~EmR~E~A 142 (1150)
.+.-|-.-++
T Consensus 132 l~~sL~~r~~ 141 (268)
T PF11802_consen 132 LLESLNKRHE 141 (268)
T ss_pred HHHHHHHHHH
Confidence 4443333333
No 198
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.25 E-value=6.2e+02 Score=31.54 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001119 519 ELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 555 (1150)
Q Consensus 519 E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekF 555 (1150)
++-.|+.+.+...+.++.=+..|..+.+.++++-..+
T Consensus 220 e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~l 256 (555)
T TIGR03545 220 EFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAEL 256 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344445555555556665555555555555554443
No 199
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.11 E-value=3.5e+02 Score=26.96 Aligned_cols=44 Identities=39% Similarity=0.548 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHH--HHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 001119 666 SFREREKAFEEE--KMREFQQISSLKEKAEKELEQVTLEIKRLDLE 709 (1150)
Q Consensus 666 ~L~EREk~FEee--k~~EL~~IN~lKE~a~kE~Eev~lE~~rLekE 709 (1150)
.|-.||++.|+. +..|-+.+..||+.+..++.+.+-++..|++.
T Consensus 53 ~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 53 AFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788887776 56667788888888888888888777777653
Done!