Query 001119
Match_columns 1150
No_of_seqs 40 out of 42
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 12:01:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.0 1.2E-05 4.3E-10 98.8 10.2 20 20-39 323-346 (1184)
2 1i84_S Smooth muscle myosin he 97.8 5.4E-05 1.8E-09 93.2 11.0 48 716-763 1117-1164(1184)
3 3na7_A HP0958; flagellar bioge 95.0 2.3 7.7E-05 44.5 20.5 90 529-636 97-186 (256)
4 3vkg_A Dynein heavy chain, cyt 94.7 4.9 0.00017 55.4 27.1 32 207-239 1664-1695(3245)
5 2dfs_A Myosin-5A; myosin-V, in 93.8 1.1 3.7E-05 55.9 17.2 48 590-640 1031-1078(1080)
6 3na7_A HP0958; flagellar bioge 93.7 7.7 0.00026 40.5 22.4 123 435-559 5-134 (256)
7 3vkg_A Dynein heavy chain, cyt 93.1 11 0.00039 52.0 26.2 26 583-608 2078-2103(3245)
8 2dfs_A Myosin-5A; myosin-V, in 92.1 5.1 0.00017 50.1 19.7 24 526-549 1020-1043(1080)
9 2efr_A General control protein 91.2 9.7 0.00033 38.4 17.0 135 128-301 3-137 (155)
10 3oja_B Anopheles plasmodium-re 89.1 7.6 0.00026 43.7 16.0 68 481-551 464-531 (597)
11 3oja_B Anopheles plasmodium-re 88.8 2.7 9.3E-05 47.3 12.2 18 526-543 562-579 (597)
12 3oja_A Leucine-rich immune mol 80.7 30 0.001 38.3 15.5 66 517-582 416-481 (487)
13 2ocy_A RAB guanine nucleotide 75.6 67 0.0023 32.5 14.7 86 109-211 56-141 (154)
14 3oja_A Leucine-rich immune mol 74.4 53 0.0018 36.4 15.2 53 692-744 433-485 (487)
15 2eqb_B RAB guanine nucleotide 71.1 52 0.0018 31.2 11.9 92 77-182 3-94 (97)
16 2v71_A Nuclear distribution pr 68.5 1.2E+02 0.004 31.6 16.5 70 472-552 104-177 (189)
17 3q8t_A Beclin-1; autophagy, AT 67.4 34 0.0012 31.7 9.8 63 696-758 6-68 (96)
18 2fxo_A Myosin heavy chain, car 64.5 1E+02 0.0035 29.5 15.6 40 525-564 79-118 (129)
19 2v71_A Nuclear distribution pr 64.2 1.4E+02 0.0048 31.0 15.9 155 130-299 22-180 (189)
20 3mq9_A Bone marrow stromal ant 62.9 48 0.0016 36.5 11.7 97 129-226 370-470 (471)
21 3hnw_A Uncharacterized protein 54.7 70 0.0024 31.4 10.0 59 526-584 72-130 (138)
22 2b9c_A Striated-muscle alpha t 49.4 1.3E+02 0.0043 30.0 10.9 101 162-269 8-108 (147)
23 2e7s_A RAB guanine nucleotide 48.4 33 0.0011 34.1 6.6 75 116-207 51-125 (135)
24 3ghg_A Fibrinogen alpha chain; 47.5 1.6E+02 0.0053 35.0 12.8 135 371-529 50-187 (562)
25 2fxo_A Myosin heavy chain, car 41.7 2.4E+02 0.0082 26.9 17.0 7 508-514 90-96 (129)
26 3o0z_A RHO-associated protein 40.1 3.3E+02 0.011 28.0 15.7 68 179-246 35-102 (168)
27 4erc_A Dual specificity protei 39.3 15 0.00052 33.6 2.6 35 1-36 1-36 (150)
28 3q8t_A Beclin-1; autophagy, AT 38.4 2.4E+02 0.0084 26.1 12.6 19 690-708 35-53 (96)
29 3i00_A HIP-I, huntingtin-inter 31.5 2.2E+02 0.0074 27.6 9.2 64 481-554 16-79 (120)
30 3u1c_A Tropomyosin alpha-1 cha 30.4 1.8E+02 0.0062 27.0 8.2 71 138-208 24-95 (101)
31 3teq_A Stromal interaction mol 29.3 54 0.0019 31.3 4.5 43 144-186 22-79 (101)
32 1m1j_B Fibrinogen beta chain; 29.1 1.7E+02 0.0059 33.9 9.4 33 246-278 126-158 (464)
33 2jee_A YIIU; FTSZ, septum, coi 26.1 3.5E+02 0.012 25.0 9.0 56 501-556 13-68 (81)
34 3trt_A Vimentin; cytoskeleton, 25.6 1.4E+02 0.0047 25.9 6.1 16 129-144 6-21 (77)
35 3hnw_A Uncharacterized protein 25.1 3.4E+02 0.012 26.6 9.4 10 446-455 36-45 (138)
36 1f5n_A Interferon-induced guan 24.9 7.3E+02 0.025 29.3 13.8 121 435-558 456-582 (592)
37 3htk_A Structural maintenance 24.5 3E+02 0.01 22.7 7.7 47 457-503 10-56 (60)
38 2i1j_A Moesin; FERM, coiled-co 20.7 78 0.0027 37.1 4.7 105 481-603 343-447 (575)
39 2k48_A Nucleoprotein; viral pr 20.3 4.7E+02 0.016 25.3 9.0 11 307-317 10-20 (107)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.99 E-value=1.2e-05 Score=98.77 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=12.3
Q ss_pred CCCCcHHHHHHHHH----ccCChH
Q 001119 20 SPLSDESIWKRLKE----AGLDEV 39 (1150)
Q Consensus 20 ~~~~d~~iWkr~~e----aG~De~ 39 (1150)
.+..|...|..++. .||+.+
T Consensus 323 ~~~~d~~~f~~~~~a~~~lg~~~~ 346 (1184)
T 1i84_S 323 PAQQDDEMFQETLEAMTIMGFTEE 346 (1184)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCCHH
T ss_pred CCCChHHHHHHHHHHHHhceeCHH
Confidence 34567777776655 477543
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.80 E-value=5.4e-05 Score=93.24 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001119 716 DRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 763 (1150)
Q Consensus 716 ~ke~le~e~aEm~kdIeeL~~ls~KLk~QREll~~ERe~f~~~vEklK 763 (1150)
....++.+..++...+++......++..++..+..+...+...++.+.
T Consensus 1117 ~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~ 1164 (1184)
T 1i84_S 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTL 1164 (1184)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444555555555555555555544443
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.02 E-value=2.3 Score=44.52 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001119 529 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 608 (1150)
Q Consensus 529 eEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd~~kre 608 (1150)
.||+........|..+.-++-...+..+.+++.+....+.++. +.+.++.+.++.-..+..+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~------------------~l~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK------------------LALELESLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443333333 3334445555666667777
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHH
Q 001119 609 VDSLNREREEFMNKMVHEHSEWFTKIQQ 636 (1150)
Q Consensus 609 lEsL~~ekEsF~~kMehE~s~~~eKiq~ 636 (1150)
++.|.-+|+.|...|...=...+++|..
T Consensus 159 ~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 159 QQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888888888888766666666654
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.68 E-value=4.9 Score=55.39 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=18.1
Q ss_pred HHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHH
Q 001119 207 RIASFKADCEEKEREIIRERQSLSDRKKILQQE 239 (1150)
Q Consensus 207 erlSf~~Erea~E~~i~~QRe~L~EweKkLqq~ 239 (1150)
+..+|.+.++-+.=++.+- =++.+|..-|+..
T Consensus 1664 rLAa~i~~~~vfqi~i~k~-Y~~~~f~eDLk~l 1695 (3245)
T 3vkg_A 1664 RFVAWMNGLSIYTIKVNNN-YKSSDFDDDLRML 1695 (3245)
T ss_dssp HHHHHHTTCEEECCC-----CCHHHHHHHHHHH
T ss_pred HHHHHHhCCeeEEEeeeCC-CCHHHHHHHHHHH
Confidence 4567888887776665543 3466676665543
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.82 E-value=1.1 Score=55.91 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 001119 590 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 640 (1150)
Q Consensus 590 E~erLK~Ek~~mrd~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad 640 (1150)
|-..|++..+++...+...-+.+. +.+-..|++++..+..-...||+.
T Consensus 1031 e~~~L~qq~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A 1031 QNTLLKTEKEELNRRIHDQAKEIT---ETMEKKLVEETKQLELDLNDERLR 1078 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566666666555554444333 567777777777777777777664
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.73 E-value=7.7 Score=40.54 Aligned_cols=123 Identities=18% Similarity=0.183 Sum_probs=57.7
Q ss_pred HhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 001119 435 VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKS----LLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL 510 (1150)
Q Consensus 435 ~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~----~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~L 510 (1150)
.+++.|-+.. .++.++..|...-+.|.++=..++.+.. .+.+-+..+..++.++.+....+..-..+|..-+.+|
T Consensus 5 ~~L~~L~~LQ-~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 5 THLKQLIEIS-HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 3455555555554444444333333333 3333334444444444444444444444555555554
Q ss_pred hhhhhhhhhHHHHHHH---HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001119 511 EAMKSEAGELSVLEIK---LKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 559 (1150)
Q Consensus 511 kitkeER~E~~~LQ~e---LKeEId~~R~Qke~LlkEae~Lk~EKekFE~EW 559 (1150)
.... ---||..|+-+ ++.+|..+.....++|...+.++......+...
T Consensus 84 ~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 84 SEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 22344444433 455666666666666666655555544444443
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.11 E-value=11 Score=51.98 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=15.6
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001119 583 VSKSLKDERDSLRQERDAMRDQHKRD 608 (1150)
Q Consensus 583 lek~~~~E~erLK~Ek~~mrd~~kre 608 (1150)
|-.-+.+|..|=...-..+..++..=
T Consensus 2078 Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2078 LLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccccHHHHHHHHHHHHHhc
Confidence 33345567777766666666665553
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.11 E-value=5.1 Score=50.05 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHH
Q 001119 526 KLKEELDVVRAQKLELMVETDKLQ 549 (1150)
Q Consensus 526 eLKeEId~~R~Qke~LlkEae~Lk 549 (1150)
.|.+.+..+..+...|....|+|.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.15 E-value=9.7 Score=38.37 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=80.0
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHH
Q 001119 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR 207 (1150)
Q Consensus 128 adLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRe 207 (1150)
..||.-|.+. ++-|. .|..++.. ++.-+..+|.++.+|+++..+.---...+...|+.+++++..-...
T Consensus 3 ~~lE~qlkea-ae~ad------~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqr 71 (155)
T 2efr_A 3 KQLEDKVEEL-LSKNY------HLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQK 71 (155)
T ss_dssp HHHHHHHHHH-HHHHH------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhH------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 4577777777 45444 45556555 6666777888888888887777666667777777777766543211
Q ss_pred HhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHHhh
Q 001119 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 287 (1150)
Q Consensus 208 rlSf~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~L~~ 287 (1150)
- +.++.+| ....-+|.+ =|-|+-...+.+..+|++++.+.-.+.......+.
T Consensus 72 E-------d~yEeqI-------k~L~~kLKE--------------AE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~ 123 (155)
T 2efr_A 72 E-------DKYEEEI-------KVLSDKLKE--------------AETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKA 123 (155)
T ss_dssp H-------HHHHHHH-------HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHH-------HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122222 222223333 34445555555566666666666666666555555
Q ss_pred hhhhhhhhHHHhhh
Q 001119 288 EKSNLDLTLVSLLK 301 (1150)
Q Consensus 288 ke~dl~~rl~~L~~ 301 (1150)
-...|+.++..|+.
T Consensus 124 i~~eLd~tl~el~~ 137 (155)
T 2efr_A 124 ISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 56666777766655
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.06 E-value=7.6 Score=43.71 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH
Q 001119 481 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE 551 (1150)
Q Consensus 481 el~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~E 551 (1150)
++..++.++....+.+.....+|....+.+.+.+++.. .....|++++.+.+.....+..+...++++
T Consensus 464 ~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 531 (597)
T 3oja_B 464 EVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLA---RSSDNLNKVFTHLKERQAFKLRETQARRTE 531 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccC---CHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 33444444444444444444444444444444433222 222445555555554444444444443333
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.80 E-value=2.7 Score=47.27 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 001119 526 KLKEELDVVRAQKLELMV 543 (1150)
Q Consensus 526 eLKeEId~~R~Qke~Llk 543 (1150)
+|++|+...+.+...|+.
T Consensus 562 ~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.66 E-value=30 Score=38.31 Aligned_cols=66 Identities=8% Similarity=-0.040 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001119 517 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVV 582 (1150)
Q Consensus 517 R~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~ 582 (1150)
..-+..+.+++-.|++..++.......+.+.|++++++-+++-+.+|..-++..-...+...++..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 416 VKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQN 481 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHH
Confidence 333344445555555556666666666666666666666666666666665555555555544433
No 13
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.61 E-value=67 Score=32.50 Aligned_cols=86 Identities=21% Similarity=0.270 Sum_probs=52.2
Q ss_pred HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchh
Q 001119 109 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 188 (1150)
Q Consensus 109 aeKREEnLkKALGvEKqCVadLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s 188 (1150)
+..--.-|..+|.-|+.--...|+.+..|..|.-+. +-|=|.+||.||+.+......+| ++..
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL---TasLFeEAN~MVa~ar~~~~~~e--------------~r~~ 118 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL---TASLFDEANNMVADARKEKYAIE--------------ILNK 118 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 333334455566666666666677777777776662 33568999999997755544444 4445
Q ss_pred HHhhhHHHHhhhhhHHHHHHhHh
Q 001119 189 SAERKLQEVVAREDDLSRRIASF 211 (1150)
Q Consensus 189 ~aeRKL~eVEaRE~~LrRerlSf 211 (1150)
.+...|.+.+.+=+.|+.+.-.+
T Consensus 119 ~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 119 RLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666665555555554443
No 14
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.44 E-value=53 Score=36.37 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001119 692 AEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 744 (1150)
Q Consensus 692 a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q 744 (1150)
+.+.|+.++.+.++|..|...+...-..++.+.++++...-.+.++.+.|-.|
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555666666666666666665555443
No 15
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.05 E-value=52 Score=31.19 Aligned_cols=92 Identities=22% Similarity=0.242 Sum_probs=60.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHH
Q 001119 77 LASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEAR 156 (1150)
Q Consensus 77 w~SK~eqlk~a~~eae~~lKREqaAhl~ALsEaeKREEnLkKALGvEKqCVadLEKAL~EmR~E~AeiK~tsesKLaEA~ 156 (1150)
+.+.|+.++..+...+.-++ .++.--.-|...|.-|+.--...|+.+..|..|.-+. +-|=|.+||
T Consensus 3 ~~~~~e~lre~l~~le~~~~-----------~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL---TasLFeEAN 68 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELS-----------DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL---TASLFDEAN 68 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34566667666666653332 2444444566666666666677788888888777763 335689999
Q ss_pred HHHHHHhhhhHHHHHhhhhhHHHHHH
Q 001119 157 CMVENAQKKFAEAEAKLHAAESLQAE 182 (1150)
Q Consensus 157 aLv~~~eeKslEvE~KL~aAeaklAE 182 (1150)
.||+.+......+|.|...-.+-+++
T Consensus 69 ~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 69 NMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999987777777776665555554
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=68.52 E-value=1.2e+02 Score=31.63 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q 001119 472 KSLLQKEKEEVNIIKSDLQKS----LSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDK 547 (1150)
Q Consensus 472 K~~L~~eKEel~~lK~dlEK~----~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~ 547 (1150)
+..|....-+|...++|+|.. -+++++-..+.+.+.|+...++ ++|.+ =+.++..-.-|.-|+-+
T Consensus 104 ~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE----------~El~E-Ke~l~~~~QRLkdE~rD 172 (189)
T 2v71_A 104 KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLE----------SELDE-KESLLVSVQRLKDEARD 172 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHHCCC---------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHHHHHHHHHHHHHH
Confidence 333444444444444444432 3444555556666666665555 44442 23333333445555555
Q ss_pred HHHHH
Q 001119 548 LQLEK 552 (1150)
Q Consensus 548 Lk~EK 552 (1150)
|+++-
T Consensus 173 Lk~El 177 (189)
T 2v71_A 173 LRQEL 177 (189)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55543
No 17
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=67.36 E-value=34 Score=31.71 Aligned_cols=63 Identities=16% Similarity=0.320 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001119 696 LEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAE 758 (1150)
Q Consensus 696 ~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QREll~~ERe~f~~~ 758 (1150)
++.+..++..|..|-..+...-+.++.+.+.+...|..|...+..|..+-+.|.++++.|..+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345556666666666666667777778888888889999999999999999999998887543
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=64.48 E-value=1e+02 Score=29.51 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 001119 525 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 564 (1150)
Q Consensus 525 ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDE 564 (1150)
.+|-..|..+-.+.+........|...|.+.+.++..|-.
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555555555555555554443
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=64.17 E-value=1.4e+02 Score=31.02 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhh----hhhHHH
Q 001119 130 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVA----REDDLS 205 (1150)
Q Consensus 130 LEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEa----RE~~Lr 205 (1150)
+-..+.+|+.|+.+ |...|| .|-+.++.-...+|.+.....++.+-...-.-.+..|+...-. --+.|+
T Consensus 22 ~~q~~~~le~El~E--FqesSr-----ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq 94 (189)
T 2v71_A 22 YKQSFQEARDELVE--FQEGSR-----ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLE 94 (189)
T ss_dssp HHHHHHHHHHHHHH--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555 444444 3444455555555666555555555444444444445444433 367777
Q ss_pred HHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcHHHHHHHH
Q 001119 206 RRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 285 (1150)
Q Consensus 206 RerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~q~lLNqREe~i~E~~~~l~~kEkeLEeakkkie~~~~~L 285 (1150)
++...+...++..-..|..--+.-.+.++........|.|.+.-+|+== |+- --++-+|++ +..+..+..-|
T Consensus 95 ~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ai----Er~---alLE~El~E-Ke~l~~~~QRL 166 (189)
T 2v71_A 95 DDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAI----ERN---AFLESELDE-KESLLVSVQRL 166 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHH-HHHHHCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH----HHH---HHHHHHHHH-HHHHHHHHHHH
Confidence 7777777777777777766666666666666666666777666665432 222 234555654 44556666677
Q ss_pred hhhhhhhhhhHHHh
Q 001119 286 NEEKSNLDLTLVSL 299 (1150)
Q Consensus 286 ~~ke~dl~~rl~~L 299 (1150)
+++-.||..-+.-+
T Consensus 167 kdE~rDLk~El~v~ 180 (189)
T 2v71_A 167 KDEARDLRQELAVR 180 (189)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777665444
No 20
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=62.89 E-value=48 Score=36.53 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHh----hhHHHHhhhhhHH
Q 001119 129 SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAE----RKLQEVVAREDDL 204 (1150)
Q Consensus 129 dLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~ae----RKL~eVEaRE~~L 204 (1150)
+.+.||.++..+...+ +..-.+-++|..-..-+++++.++...+..+++.-+-+||.--.+. .|.-+-++|=..|
T Consensus 370 t~eeal~~~~~~i~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (471)
T 3mq9_A 370 TVDEALKDAQTRITAA-RDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEEL 448 (471)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555554432 2223445678888889999999999999999999999998754433 3333334444445
Q ss_pred HHHHhHhhhhhhHHHHHHHHHh
Q 001119 205 SRRIASFKADCEEKEREIIRER 226 (1150)
Q Consensus 205 rRerlSf~~Erea~E~~i~~QR 226 (1150)
.-++..++.+.+..++++.++|
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 449 EGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555555555555555544
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.73 E-value=70 Score=31.42 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001119 526 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 584 (1150)
Q Consensus 526 eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE~LDEKR~el~KEa~~I~eEre~le 584 (1150)
+++++++.++.+...+.+|..+||.+....-..-+.+...-++|+++......+-..++
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666555555555555555555555444444443
No 22
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=49.41 E-value=1.3e+02 Score=29.97 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=50.2
Q ss_pred HhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHH
Q 001119 162 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241 (1150)
Q Consensus 162 ~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~ee 241 (1150)
+++-+.-++.+|..|-.+|.+|.-...+.+|..+-++.|...--- -.+.+|..+..-+....+-.++..+..-
T Consensus 8 lEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deE-------r~~~lE~qLkeak~~aeeadrKyeE~~R 80 (147)
T 2b9c_A 8 VEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEE-------KMEIQEIQLKEAKHIAEDADRKYEEVAR 80 (147)
T ss_dssp ---CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344455566777777777888877777777777777777652111 1122333333333333344444444444
Q ss_pred HHHHHHhhhhhhhHhhHhhHHHHhHhHH
Q 001119 242 RLLDAQTLLNEREDHILSKLQELSRKEK 269 (1150)
Q Consensus 242 RL~d~q~lLNqREe~i~E~~~~l~~kEk 269 (1150)
+|.-...-|..=++++-.....+..++.
T Consensus 81 Kl~~~E~dLeraeeRae~aE~k~~eLEe 108 (147)
T 2b9c_A 81 KLVIIESDLERAEERAELSEGKCAELEE 108 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333333333
No 23
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.45 E-value=33 Score=34.11 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=41.0
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHH
Q 001119 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (1150)
Q Consensus 116 LkKALGvEKqCVadLEKAL~EmR~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~ 195 (1150)
|..+|.-|+.--...|.....|..|.-+. +-|=|.+||.||+.+......+|.| ...+.+.|.
T Consensus 51 L~~~l~eE~~~R~~aE~~~~~ie~ElE~L---TasLFeEAN~MVa~ar~~~~~~e~r--------------~~~L~~ql~ 113 (135)
T 2e7s_A 51 LREDIAKENELRTKAEEEADKLNKEVEDL---TASLFDEANNLVADARMEKYAIEIL--------------NKRLTEQLR 113 (135)
T ss_dssp HHHHHHHTTSHHHHHHHTTHHHHHHHHHH---HHHHHHHHHHHHHHTTHHHHHHHHH--------------HHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Confidence 44445555554555566666666665552 2356899999999886555545444 444555555
Q ss_pred HHhhhhhHHHHH
Q 001119 196 EVVAREDDLSRR 207 (1150)
Q Consensus 196 eVEaRE~~LrRe 207 (1150)
+.+++=+.|+.+
T Consensus 114 e~e~ll~~lq~Q 125 (135)
T 2e7s_A 114 EKDMLLDTLTLQ 125 (135)
T ss_dssp HHHHCC------
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.50 E-value=1.6e+02 Score=35.05 Aligned_cols=135 Identities=12% Similarity=0.083 Sum_probs=73.6
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHH---HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhH
Q 001119 371 EIQKIIANHESALRVKQSEFEAEL---AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 447 (1150)
Q Consensus 371 EIQKLldeh~a~L~~Kk~EFElEl---E~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL 447 (1150)
+||-||+.|+--|..+..++=.++ .+.+++.+.=+..+...|..+-......+..+.+--.+|+.+...|+++
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKek---- 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRK---- 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHH----
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH----
Confidence 688888888887777766665544 4556666666777777766666555555555555555555444444332
Q ss_pred HHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 001119 448 VERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKL 527 (1150)
Q Consensus 448 ~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eL 527 (1150)
|..+..+|..=+-.|..+-.+|+|+-+.|..|..--.--+.+-=.-+=+...|.-+|-+|
T Consensus 126 --------------------VdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 126 --------------------VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHH
Confidence 222223333333333444445555555555555544444444444444555565555555
Q ss_pred HH
Q 001119 528 KE 529 (1150)
Q Consensus 528 Ke 529 (1150)
.|
T Consensus 186 eQ 187 (562)
T 3ghg_A 186 EQ 187 (562)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 25
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=41.68 E-value=2.4e+02 Score=26.93 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=2.5
Q ss_pred hhhhhhh
Q 001119 508 DKLEAMK 514 (1150)
Q Consensus 508 E~Lkitk 514 (1150)
++|+-.+
T Consensus 90 ~rleeee 96 (129)
T 2fxo_A 90 KRLEDEE 96 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 26
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=40.05 E-value=3.3e+02 Score=28.01 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=51.9
Q ss_pred HHHHHhhchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 001119 179 LQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 246 (1150)
Q Consensus 179 klAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqq~eeRL~d~ 246 (1150)
-+||+.-..+.++....|+..+=..|+..+.++..|+-..-..+.-+|.+.+-..-...+.+.|+.-.
T Consensus 35 ~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L 102 (168)
T 3o0z_A 35 SHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSL 102 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888899999999999999999999999998888888888888876655544444444444333
No 27
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=39.32 E-value=15 Score=33.59 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=30.4
Q ss_pred CCCCCCCcccccCCCccccCCCC-cHHHHHHHHHccC
Q 001119 1 MASPSSGRLAITPSSRVLQSPLS-DESIWKRLKEAGL 36 (1150)
Q Consensus 1 ~~~p~~~~l~~~~g~rvl~~~~~-d~~iWkr~~eaG~ 36 (1150)
|+.||.+--.|+|| ++.+++.. ..+++..|+..|+
T Consensus 1 m~~pp~~~~~i~~~-~l~~~~~p~~~~~~~~L~~~gi 36 (150)
T 4erc_A 1 MGVQPPNFSWVLPG-RLAGLALPRLPAHYQFLLDLGV 36 (150)
T ss_dssp CCCCCTTCEEEETT-TEEEESCCCSHHHHHHHHHTTE
T ss_pred CCCCCCCCEEeccC-ceeeecCCCCHHHHHHHHHCCC
Confidence 88999998889998 67777777 7889999999995
No 28
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=38.39 E-value=2.4e+02 Score=26.07 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 001119 690 EKAEKELEQVTLEIKRLDL 708 (1150)
Q Consensus 690 E~a~kE~Eev~lE~~rLek 708 (1150)
+.+..++.....|..+|+.
T Consensus 35 ~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 35 KVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333
No 29
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.49 E-value=2.2e+02 Score=27.65 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q 001119 481 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAK 554 (1150)
Q Consensus 481 el~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKek 554 (1150)
.|..|+.+++..+..++.=+.........|+-- . ..|.-|++..|+++.....|.+.|+.+.+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~------i----~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGH------V----SELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666655554433333333333211 1 456677788888888888888888876653
No 30
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=30.40 E-value=1.8e+02 Score=26.96 Aligned_cols=71 Identities=21% Similarity=0.173 Sum_probs=0.0
Q ss_pred Hhhhhhhh-hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHhhchhHHhhhHHHHhhhhhHHHHHH
Q 001119 138 RAESAETK-VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRI 208 (1150)
Q Consensus 138 R~E~AeiK-~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE~~LrRer 208 (1150)
|++.++.+ -.++.+...+-.=|.++++|..-+|.-|-.+...+.+++.+..+.+....+.|+--..|.|++
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 31
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=29.27 E-value=54 Score=31.30 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=34.1
Q ss_pred hhhhhhhhhhHHHHHHHHHhhh---------------hHHHHHhhhhhHHHHHHHhhc
Q 001119 144 TKVAADSKFAEARCMVENAQKK---------------FAEAEAKLHAAESLQAEANRY 186 (1150)
Q Consensus 144 iK~tsesKLaEA~aLv~~~eeK---------------slEvE~KL~aAeaklAEa~Rk 186 (1150)
-|..|+.+|..|...++.+.+| .++|+.++++|...+.++.+-
T Consensus 22 kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~ 79 (101)
T 3teq_A 22 KKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATAA 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999 356778888888877777653
No 32
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.09 E-value=1.7e+02 Score=33.90 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=17.6
Q ss_pred HHhhhhhhhHhhHhhHHHHhHhHHHHHHHHhcH
Q 001119 246 AQTLLNEREDHILSKLQELSRKEKELEASRANV 278 (1150)
Q Consensus 246 ~q~lLNqREe~i~E~~~~l~~kEkeLEeakkki 278 (1150)
.+..+++++..+.++...++.....||..++.|
T Consensus 126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555444
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.07 E-value=3.5e+02 Score=25.02 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=31.7
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001119 501 KQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 556 (1150)
Q Consensus 501 ~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE 556 (1150)
.+|..+-+.+..++-|=.|+-.--..|.++.+..|.....|..|...|+++...|.
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444555566666666666666666666666665543
No 34
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.60 E-value=1.4e+02 Score=25.95 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhhhhhh
Q 001119 129 SLEKAVHEIRAESAET 144 (1150)
Q Consensus 129 dLEKAL~EmR~E~Aei 144 (1150)
||-++|.+||+.|-++
T Consensus 6 DL~~il~eiRaQYE~i 21 (77)
T 3trt_A 6 DCTAAMRDVRQQYESV 21 (77)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 7889999999998764
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.11 E-value=3.4e+02 Score=26.64 Aligned_cols=10 Identities=0% Similarity=-0.017 Sum_probs=4.6
Q ss_pred hHHHHhhhhH
Q 001119 446 DLVERSHLLE 455 (1150)
Q Consensus 446 dL~~Ksk~LK 455 (1150)
.++.|...++
T Consensus 36 ~vd~km~ei~ 45 (138)
T 3hnw_A 36 YINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 36
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.92 E-value=7.3e+02 Score=29.31 Aligned_cols=121 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred HhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh-h
Q 001119 435 VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA-M 513 (1150)
Q Consensus 435 ~k~~~lkEKEkdL~~Ksk~LKEkEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi~ee~E~Lki-t 513 (1150)
++.+-|.+-=+..+....++-.-+++|...+|.++.+...-.+-..+...+..-..+.-.-+++|++...+-..+|.. |
T Consensus 456 ~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~km 535 (592)
T 1f5n_A 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535 (592)
T ss_dssp THHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHH-----HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001119 514 KSEAGELSV-----LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 558 (1150)
Q Consensus 514 keER~E~~~-----LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~E 558 (1150)
+.||.-+.+ |..+||++=+.++.. ...+++.|+.|...+...
T Consensus 536 e~~~~~~~~e~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 536 ENDRVQLLKEQERTLALKLQEQEQLLKEG---FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
No 37
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.54 E-value=3e+02 Score=22.72 Aligned_cols=47 Identities=28% Similarity=0.298 Sum_probs=30.3
Q ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001119 457 KENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 503 (1150)
Q Consensus 457 kEksL~aeEK~le~eK~~L~~eKEel~~lK~dlEK~~a~le~qk~qi 503 (1150)
.+..+....-.....+..+.+.+..+..+..+|++++.+|...+.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555566677777777777777777777777666655
No 38
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.70 E-value=78 Score=37.05 Aligned_cols=105 Identities=15% Similarity=0.247 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 001119 481 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 560 (1150)
Q Consensus 481 el~~lK~dlEK~~a~le~qk~qi~ee~E~LkitkeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~EKekFE~EWE 560 (1150)
.+..+..+..+...++......+..--+++++.++|+..|...+.++.+++..++.+..--.+| =+
T Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e--------------~~ 408 (575)
T 2i1j_A 343 RLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAE--------------RQ 408 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------HH
Confidence 3445556666677777777778888888889999999998888888888877766654443333 33
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 001119 561 MIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRD 603 (1150)
Q Consensus 561 ~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~mrd 603 (1150)
.|..+..+.+-++.++.++.+.=. .|-.+|+.+...++.
T Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~----~e~~~~~~~~~~a~~ 447 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQQEVELKD----SETRRLQEEVEDARR 447 (575)
T ss_dssp -------------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 444455555555555555544322 244555555544444
No 39
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.29 E-value=4.7e+02 Score=25.29 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=8.6
Q ss_pred hccccchhhhh
Q 001119 307 TISFPFLFLNL 317 (1150)
Q Consensus 307 t~~~~~~~l~~ 317 (1150)
.|.+|+++||.
T Consensus 10 ~~~~~~~~~~~ 20 (107)
T 2k48_A 10 PIPNPLLGLDS 20 (107)
T ss_dssp CCCCSCCSCCC
T ss_pred CCCCccccccc
Confidence 36788999886
Done!