Query 001119
Match_columns 1150
No_of_seqs 40 out of 42
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 12:01:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001119.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001119hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f5na1 a.114.1.1 (A:284-583) 49.3 1E+02 0.0075 28.6 17.6 20 546-565 172-191 (300)
2 d2cosa1 a.5.2.1 (A:8-48) Serin 34.5 18 0.0013 27.5 3.8 31 26-56 4-41 (41)
3 d1xria_ c.45.1.1 (A:) Putative 29.0 12 0.00084 33.3 2.2 33 1-36 2-34 (151)
4 d1f5na1 a.114.1.1 (A:284-583) 27.8 2.2E+02 0.016 26.2 25.0 20 371-390 66-85 (300)
5 d1aopa2 d.58.36.1 (A:346-425) 19.3 11 0.00083 31.6 0.1 31 7-37 43-76 (80)
6 d1qvra2 c.37.1.20 (A:149-535) 16.6 1.7E+02 0.013 29.9 8.7 20 522-541 313-332 (387)
7 d1zu2a1 a.118.8.1 (A:1-145) Mi 15.9 80 0.0058 27.1 5.0 45 51-95 65-109 (145)
8 d1k4ta1 a.2.8.1 (A:641-712) Eu 14.6 2.9E+02 0.021 23.0 7.9 53 458-510 1-58 (72)
9 d1aopa1 d.58.36.1 (A:81-145) S 11.5 57 0.0041 25.9 2.4 31 7-37 30-63 (65)
10 d2fa8a1 c.47.1.23 (A:4-89) Hyp 9.2 12 0.00086 32.5 -2.8 47 3-49 31-79 (86)
No 1
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.33 E-value=1e+02 Score=28.64 Aligned_cols=20 Identities=5% Similarity=-0.062 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhHHH
Q 001119 546 DKLQLEKAKFEAEWEMIDEK 565 (1150)
Q Consensus 546 e~Lk~EKekFE~EWE~LDEK 565 (1150)
-.+......|...|+.+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~ 191 (300)
T d1f5na1 172 IQAEEILQTYLKSKESMTDA 191 (300)
T ss_dssp TTHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666655443
No 2
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.54 E-value=18 Score=27.53 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=25.2
Q ss_pred HHHHHHHHccCChHHHhh-------hcHHHHHHHHHHH
Q 001119 26 SIWKRLKEAGLDEVSIKR-------RDKAALIAYIAKL 56 (1150)
Q Consensus 26 ~iWkr~~eaG~De~s~~r-------rD~~aLia~IskL 56 (1150)
.+.+-|.-||||++-.-| |.-+|.|+||||.
T Consensus 4 QMlqdl~~aG~D~~m~iral~qt~~rsieaaie~iskm 41 (41)
T d2cosa1 4 QMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKM 41 (41)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHhcC
Confidence 567889999999986543 7788999999984
No 3
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.01 E-value=12 Score=33.31 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=26.9
Q ss_pred CCCCCCCcccccCCCccccCCCCcHHHHHHHHHccC
Q 001119 1 MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGL 36 (1150)
Q Consensus 1 ~~~p~~~~l~~~~g~rvl~~~~~d~~iWkr~~eaG~ 36 (1150)
|.||+.++ .|.+| |.+|+...+..|..|+..|+
T Consensus 2 ~~pp~nF~-~V~~~--lyRs~~~t~~~~~~L~~lgI 34 (151)
T d1xria_ 2 LIPPLNFS-MVDNG--IFRSGFPDSANFSFLQTLGL 34 (151)
T ss_dssp BCCCTTCE-EEETT--EEEESCCCHHHHHHHHHHTC
T ss_pred CCCCcccc-eecCC--ceecCCCCHHHHHHHHHCCC
Confidence 34565554 48888 99999999999999999996
No 4
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.78 E-value=2.2e+02 Score=26.18 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=11.7
Q ss_pred HHHHHHHHhHHHHhhhhhhH
Q 001119 371 EIQKIIANHESALRVKQSEF 390 (1150)
Q Consensus 371 EIQKLldeh~a~L~~Kk~EF 390 (1150)
..+.|.+.|..++..-..-|
T Consensus 66 ~~eel~~~h~~~~~~a~~~f 85 (300)
T d1f5na1 66 SLQELLDLHRDSEREAIEVF 85 (300)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 34567777776665544444
No 5
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=19.35 E-value=11 Score=31.58 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=25.1
Q ss_pred CcccccCCCccccCCCCcHH---HHHHHHHccCC
Q 001119 7 GRLAITPSSRVLQSPLSDES---IWKRLKEAGLD 37 (1150)
Q Consensus 7 ~~l~~~~g~rvl~~~~~d~~---iWkr~~eaG~D 37 (1150)
|.+-+||.|.++...+++++ +|.+|+++||+
T Consensus 43 g~irlT~~Qnlil~~V~~~~~~~i~~~L~~~Gl~ 76 (80)
T d1aopa2 43 GDFRITANQNLIIAGVPESEKAKIEKIAKESGLM 76 (80)
T ss_dssp SEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTT
T ss_pred CcEEEcCCCCeEecCCCHHHHHHHHHHHHHcCCC
Confidence 44557999988877777666 89999999984
No 6
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=16.63 E-value=1.7e+02 Score=29.94 Aligned_cols=20 Identities=20% Similarity=0.004 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001119 522 VLEIKLKEELDVVRAQKLEL 541 (1150)
Q Consensus 522 ~LQ~eLKeEId~~R~Qke~L 541 (1150)
.-..+||++|+.+|.+.+..
T Consensus 313 ~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 313 RKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33467888888888876543
No 7
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.94 E-value=80 Score=27.14 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHH
Q 001119 51 AYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQ 95 (1150)
Q Consensus 51 a~IskLE~ElfdyQynMGLLLiEkKEw~SK~eqlk~a~~eae~~l 95 (1150)
.++-+|.-.-++.-||||.++.+...+..........+..|...+
T Consensus 65 ~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~ 109 (145)
T d1zu2a1 65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF 109 (145)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhh
Confidence 355566667788889999999998887766555555555554444
No 8
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.62 E-value=2.9e+02 Score=23.02 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=39.5
Q ss_pred HhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHhhh
Q 001119 458 ENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQ-----KSLSSLDEKKKQVNCAKDKL 510 (1150)
Q Consensus 458 EksL~aeEK~le~eK~~L~~eKEel~~lK~dlE-----K~~a~le~qk~qi~ee~E~L 510 (1150)
|+||......|+..+.+|..-+.++..++.|.- ++...++..+.++.--.++|
T Consensus 1 eKsMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL 58 (72)
T d1k4ta1 1 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQL 58 (72)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888899999999888888888888775 55566666666655555544
No 9
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=11.54 E-value=57 Score=25.89 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=0.0
Q ss_pred CcccccCCCccccCCCCcHHH---HHHHHHccCC
Q 001119 7 GRLAITPSSRVLQSPLSDESI---WKRLKEAGLD 37 (1150)
Q Consensus 7 ~~l~~~~g~rvl~~~~~d~~i---Wkr~~eaG~D 37 (1150)
|.+-+|+-|.|---.+..++. |+.|.++||+
T Consensus 30 g~i~~TtRQ~iql~~v~~~~l~~v~~~L~~~GL~ 63 (65)
T d1aopa1 30 GSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLD 63 (65)
T ss_dssp CCEEECTTSCEEECCBC-----CHHHHHHHTTCC
T ss_pred CceeecCcceEEeCCCCHHHHHHHHHHHHHcCCC
No 10
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=9.23 E-value=12 Score=32.51 Aligned_cols=47 Identities=19% Similarity=0.525 Sum_probs=0.0
Q ss_pred CCCCCcccccCCC-ccccCCCCcHHHHHHHHHccC-ChHHHhhhcHHHH
Q 001119 3 SPSSGRLAITPSS-RVLQSPLSDESIWKRLKEAGL-DEVSIKRRDKAAL 49 (1150)
Q Consensus 3 ~p~~~~l~~~~g~-rvl~~~~~d~~iWkr~~eaG~-De~s~~rrD~~aL 49 (1150)
+...+.++..||+ ++..--+.+.-+|.|..+-|| |...|+.+=|..+
T Consensus 31 ~~~i~evsL~P~~~G~FeV~v~g~li~srk~~ggFPd~kelkq~VRd~i 79 (86)
T d2fa8a1 31 ASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLI 79 (86)
T ss_dssp GGGCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHH
T ss_pred CccCceEEEEECCCeEEEEEECCEEEEEeccCCCCCCHHHHHHHHHHhh
Done!