Query 001120
Match_columns 1150
No_of_seqs 384 out of 978
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 16:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1948 Metalloproteinase-rela 100.0 3E-212 6E-217 1817.1 102.6 1089 4-1149 5-1165(1165)
2 KOG1948 Metalloproteinase-rela 100.0 9.5E-48 2.1E-52 447.8 72.8 908 21-1143 153-1164(1165)
3 COG4932 Predicted outer membra 100.0 1.4E-27 3E-32 289.3 35.4 413 93-541 981-1433(1531)
4 COG4932 Predicted outer membra 99.9 4.6E-26 1E-30 276.3 31.1 377 20-428 1006-1416(1531)
5 PF13620 CarboxypepD_reg: Carb 98.9 6.1E-09 1.3E-13 95.1 8.9 76 276-351 1-81 (82)
6 PF13620 CarboxypepD_reg: Carb 98.8 1.1E-08 2.4E-13 93.4 7.9 74 76-159 1-74 (82)
7 PF13715 DUF4480: Domain of un 98.2 7.1E-06 1.5E-10 76.0 9.4 58 276-334 1-60 (88)
8 PF05738 Cna_B: Cna protein B- 98.1 9.7E-06 2.1E-10 71.8 8.4 61 97-158 1-65 (70)
9 PF13715 DUF4480: Domain of un 98.1 2.8E-05 6.2E-10 72.0 10.7 58 76-145 1-58 (88)
10 cd03863 M14_CPD_II The second 98.0 2.4E-05 5.1E-10 91.6 9.5 75 275-351 297-373 (375)
11 PF05738 Cna_B: Cna protein B- 97.8 2.7E-05 5.9E-10 68.9 5.4 64 823-886 1-69 (70)
12 cd06245 M14_CPD_III The third 97.8 6.3E-05 1.4E-09 87.9 9.3 74 275-350 287-360 (363)
13 PF07210 DUF1416: Protein of u 97.8 9.2E-05 2E-09 66.1 7.8 57 76-142 9-65 (85)
14 cd03865 M14_CPE_H Peptidase M1 97.8 6.5E-05 1.4E-09 88.2 8.9 73 276-350 327-400 (402)
15 cd03864 M14_CPN Peptidase M14 97.7 8E-05 1.7E-09 87.7 9.0 74 275-350 316-390 (392)
16 cd03868 M14_CPD_I The first ca 97.6 0.00016 3.4E-09 85.3 8.5 68 275-343 296-364 (372)
17 cd03863 M14_CPD_II The second 97.5 0.0003 6.4E-09 82.5 9.8 85 801-892 291-375 (375)
18 PF07210 DUF1416: Protein of u 97.5 0.00042 9.2E-09 62.0 7.9 56 171-243 9-64 (85)
19 PF08400 phage_tail_N: Prophag 97.4 0.00049 1.1E-08 68.1 8.2 67 275-342 3-80 (134)
20 PRK15036 hydroxyisourate hydro 97.4 0.00031 6.8E-09 70.5 6.9 62 76-144 28-96 (137)
21 cd03866 M14_CPM Peptidase M14 97.4 0.00038 8.2E-09 81.9 8.8 65 275-341 295-362 (376)
22 cd03858 M14_CP_N-E_like Carbox 97.4 0.00043 9.3E-09 81.8 9.0 59 275-334 298-357 (374)
23 PF08400 phage_tail_N: Prophag 97.3 0.00087 1.9E-08 66.4 8.9 61 76-145 4-70 (134)
24 cd03867 M14_CPZ Peptidase M14- 97.3 0.00062 1.3E-08 80.7 8.6 65 275-341 318-383 (395)
25 cd03864 M14_CPN Peptidase M14 97.1 0.0012 2.6E-08 77.9 8.9 82 801-890 310-391 (392)
26 cd03869 M14_CPX_like Peptidase 97.1 0.0011 2.4E-08 78.1 7.5 63 276-341 330-394 (405)
27 cd06245 M14_CPD_III The third 97.1 0.0021 4.6E-08 75.3 9.8 81 801-890 281-361 (363)
28 cd03865 M14_CPE_H Peptidase M1 97.0 0.002 4.3E-08 75.9 9.0 82 801-890 320-401 (402)
29 cd03866 M14_CPM Peptidase M14 96.9 0.0027 5.8E-08 74.8 9.2 68 75-156 295-362 (376)
30 PRK15036 hydroxyisourate hydro 96.9 0.0016 3.4E-08 65.5 6.0 55 276-330 28-95 (137)
31 KOG2649 Zinc carboxypeptidase 96.7 0.0042 9.2E-08 72.7 8.1 75 276-353 379-455 (500)
32 TIGR02962 hdxy_isourate hydrox 96.6 0.0046 1E-07 60.0 6.4 60 77-143 3-70 (112)
33 PF14686 fn3_3: Polysaccharide 96.5 0.0086 1.9E-07 56.5 7.6 61 76-142 4-71 (95)
34 PF14686 fn3_3: Polysaccharide 96.4 0.022 4.7E-07 53.8 9.5 62 170-242 3-69 (95)
35 cd00421 intradiol_dioxygenase 96.4 0.0092 2E-07 61.0 7.3 53 75-135 12-80 (146)
36 cd03868 M14_CPD_I The first ca 96.2 0.014 3E-07 69.0 8.8 81 801-889 290-371 (372)
37 cd03858 M14_CP_N-E_like Carbox 96.0 0.021 4.5E-07 67.7 9.2 78 804-889 295-373 (374)
38 COG3485 PcaH Protocatechuate 3 95.8 0.012 2.6E-07 63.8 5.4 51 275-325 73-146 (226)
39 PF11974 MG1: Alpha-2-macroglo 95.8 0.026 5.7E-07 53.5 7.0 46 93-139 24-70 (97)
40 cd03867 M14_CPZ Peptidase M14- 95.7 0.031 6.6E-07 66.5 8.9 79 803-889 314-394 (395)
41 cd05822 TLP_HIUase HIUase (5-h 95.6 0.027 5.8E-07 54.7 6.2 60 77-143 3-70 (112)
42 PF00775 Dioxygenase_C: Dioxyg 95.5 0.024 5.1E-07 60.1 5.9 49 275-323 30-99 (183)
43 TIGR02962 hdxy_isourate hydrox 95.4 0.025 5.4E-07 55.0 5.3 54 277-330 3-70 (112)
44 PF00775 Dioxygenase_C: Dioxyg 95.3 0.057 1.2E-06 57.3 8.2 67 171-238 31-99 (183)
45 cd03464 3,4-PCD_beta Protocate 95.3 0.017 3.8E-07 62.6 4.4 48 275-322 66-137 (220)
46 PF09430 DUF2012: Protein of u 95.2 0.042 9.1E-07 54.5 6.5 51 289-340 7-61 (123)
47 cd03459 3,4-PCD Protocatechuat 95.2 0.026 5.5E-07 58.4 4.9 48 275-322 16-87 (158)
48 cd05821 TLP_Transthyretin Tran 95.1 0.044 9.5E-07 53.8 5.9 61 76-143 8-76 (121)
49 cd05469 Transthyretin_like Tra 95.0 0.051 1.1E-06 52.7 6.1 60 77-143 3-70 (113)
50 TIGR02465 chlorocat_1_2 chloro 95.0 0.025 5.5E-07 62.3 4.5 48 275-322 99-165 (246)
51 PF10670 DUF4198: Domain of un 94.9 0.1 2.2E-06 56.4 9.1 64 168-242 149-212 (215)
52 TIGR02422 protocat_beta protoc 94.9 0.039 8.5E-07 59.9 5.6 48 275-322 61-132 (220)
53 TIGR00864 PCC polycystin catio 94.9 31 0.00068 49.8 53.4 172 392-586 1831-2021(2740)
54 cd03459 3,4-PCD Protocatechuat 94.8 0.065 1.4E-06 55.5 6.8 68 171-238 17-88 (158)
55 COG2351 Transthyretin-like pro 94.8 0.048 1E-06 52.4 5.2 61 76-143 10-78 (124)
56 cd00421 intradiol_dioxygenase 94.8 0.061 1.3E-06 55.0 6.5 53 895-948 12-80 (146)
57 PF08308 PEGA: PEGA domain; I 94.7 0.11 2.4E-06 46.1 7.2 58 289-351 10-67 (71)
58 TIGR02438 catachol_actin catec 94.7 0.033 7.1E-07 62.5 4.6 48 275-322 133-199 (281)
59 cd03463 3,4-PCD_alpha Protocat 94.7 0.045 9.8E-07 58.0 5.4 48 275-322 37-107 (185)
60 cd03460 1,2-CTD Catechol 1,2 d 94.7 0.036 7.7E-07 62.3 4.9 48 275-322 125-191 (282)
61 cd03458 Catechol_intradiol_dio 94.7 0.042 9.1E-07 60.9 5.3 49 275-323 105-172 (256)
62 smart00095 TR_THY Transthyreti 94.7 0.067 1.5E-06 52.5 6.1 60 77-143 6-73 (121)
63 TIGR02465 chlorocat_1_2 chloro 94.7 0.068 1.5E-06 59.0 6.8 65 171-237 100-165 (246)
64 TIGR02439 catechol_proteo cate 94.6 0.04 8.6E-07 62.0 5.0 48 275-322 129-195 (285)
65 COG3485 PcaH Protocatechuate 3 94.6 0.055 1.2E-06 58.8 5.9 69 75-154 73-159 (226)
66 cd03461 1,2-HQD Hydroxyquinol 94.6 0.042 9E-07 61.7 5.0 48 275-322 121-187 (277)
67 cd03462 1,2-CCD chlorocatechol 94.6 0.037 8.1E-07 61.0 4.5 48 275-322 100-166 (247)
68 PF00576 Transthyretin: HIUase 94.6 0.037 8.1E-07 53.8 4.0 59 77-142 3-70 (112)
69 cd03458 Catechol_intradiol_dio 94.5 0.1 2.2E-06 58.0 7.8 55 75-137 105-173 (256)
70 PF09430 DUF2012: Protein of u 94.4 0.11 2.5E-06 51.4 7.2 56 95-155 5-61 (123)
71 cd03463 3,4-PCD_alpha Protocat 94.4 0.093 2E-06 55.7 6.9 65 171-237 38-107 (185)
72 PF10670 DUF4198: Domain of un 94.4 0.11 2.4E-06 56.1 7.8 57 74-139 150-211 (215)
73 TIGR02423 protocat_alph protoc 94.4 0.05 1.1E-06 58.1 4.9 48 275-322 40-111 (193)
74 PF11974 MG1: Alpha-2-macroglo 94.4 0.24 5.2E-06 47.0 8.9 63 888-952 6-70 (97)
75 cd03462 1,2-CCD chlorocatechol 94.2 0.098 2.1E-06 57.7 6.8 66 171-238 101-167 (247)
76 cd03460 1,2-CTD Catechol 1,2 d 94.0 0.094 2E-06 59.0 6.2 66 171-238 126-192 (282)
77 cd03464 3,4-PCD_beta Protocate 94.0 0.13 2.7E-06 56.0 6.9 68 170-237 66-137 (220)
78 COG2373 Large extracellular al 93.9 6.7 0.00015 54.4 24.4 184 93-295 316-535 (1621)
79 KOG2649 Zinc carboxypeptidase 93.9 0.12 2.6E-06 61.1 7.0 65 76-156 379-443 (500)
80 TIGR02438 catachol_actin catec 93.9 0.083 1.8E-06 59.3 5.5 78 897-975 135-228 (281)
81 TIGR02439 catechol_proteo cate 93.8 0.11 2.3E-06 58.6 6.2 66 171-238 130-196 (285)
82 TIGR02422 protocat_beta protoc 93.7 0.16 3.6E-06 55.2 7.2 67 171-237 62-132 (220)
83 TIGR02423 protocat_alph protoc 93.7 0.16 3.4E-06 54.4 6.8 67 171-237 41-111 (193)
84 cd03869 M14_CPX_like Peptidase 93.6 0.14 3.1E-06 60.6 7.0 65 75-155 329-393 (405)
85 KOG0518 Actin-binding cytoskel 93.4 35 0.00075 44.6 50.8 53 760-816 898-952 (1113)
86 cd03461 1,2-HQD Hydroxyquinol 93.2 0.15 3.2E-06 57.3 6.1 55 75-137 121-189 (277)
87 KOG0518 Actin-binding cytoskel 92.7 42 0.00091 43.9 39.5 26 303-328 625-652 (1113)
88 cd05822 TLP_HIUase HIUase (5-h 92.3 0.25 5.3E-06 48.1 5.4 53 277-329 3-69 (112)
89 PF00576 Transthyretin: HIUase 92.0 0.26 5.6E-06 48.0 5.2 53 277-329 3-70 (112)
90 KOG3006 Transthyretin and rela 91.8 1.1 2.3E-05 43.3 8.9 61 75-142 21-89 (132)
91 PF02369 Big_1: Bacterial Ig-l 90.8 0.98 2.1E-05 43.1 7.8 62 76-145 26-94 (100)
92 TIGR00864 PCC polycystin catio 90.6 1.1E+02 0.0025 44.6 38.4 106 397-527 1751-1864(2740)
93 cd05821 TLP_Transthyretin Tran 90.5 0.67 1.4E-05 45.7 6.4 57 172-240 9-71 (121)
94 cd05469 Transthyretin_like Tra 90.2 0.53 1.2E-05 45.8 5.4 53 277-329 3-69 (113)
95 PF01060 DUF290: Transthyretin 90.0 0.46 1E-05 43.4 4.6 36 905-940 7-46 (80)
96 PF02369 Big_1: Bacterial Ig-l 90.0 1.1 2.4E-05 42.7 7.5 55 275-329 25-91 (100)
97 smart00095 TR_THY Transthyreti 89.5 0.91 2E-05 44.7 6.5 57 172-240 6-68 (121)
98 cd03457 intradiol_dioxygenase_ 89.3 1 2.2E-05 48.0 7.2 65 171-237 28-101 (188)
99 cd00222 CollagenBindB Collagen 88.9 30 0.00066 36.9 17.8 122 94-240 19-162 (187)
100 COG2373 Large extracellular al 88.6 14 0.0003 51.5 18.8 169 809-978 307-507 (1621)
101 PF01060 DUF290: Transthyretin 88.4 1.1 2.4E-05 40.9 5.9 48 174-233 2-49 (80)
102 PF08308 PEGA: PEGA domain; I 88.1 1.5 3.3E-05 38.7 6.5 61 823-893 10-70 (71)
103 smart00634 BID_1 Bacterial Ig- 88.0 1.7 3.8E-05 40.6 7.1 55 276-330 21-86 (92)
104 COG2351 Transthyretin-like pro 88.0 1 2.2E-05 43.6 5.5 54 276-329 10-77 (124)
105 cd03457 intradiol_dioxygenase_ 87.6 0.83 1.8E-05 48.7 5.2 53 76-135 28-101 (188)
106 COG5266 CbiK ABC-type Co2+ tra 87.0 1.9 4.1E-05 47.4 7.6 59 74-141 171-242 (264)
107 COG5266 CbiK ABC-type Co2+ tra 85.7 3.1 6.6E-05 45.8 8.3 73 169-244 171-243 (264)
108 PF10794 DUF2606: Protein of u 84.9 3.1 6.7E-05 40.3 6.9 61 75-143 42-110 (131)
109 PF07495 Y_Y_Y: Y_Y_Y domain; 84.1 2.2 4.8E-05 36.9 5.4 44 478-526 21-65 (66)
110 PRK15235 outer membrane fimbri 81.7 22 0.00048 46.6 15.3 111 839-950 668-784 (814)
111 PF12866 DUF3823: Protein of u 81.0 15 0.00033 40.3 11.5 86 268-356 15-117 (222)
112 PF10794 DUF2606: Protein of u 80.1 4.5 9.7E-05 39.2 6.0 53 276-328 43-108 (131)
113 PF07495 Y_Y_Y: Y_Y_Y domain; 79.3 4.2 9.1E-05 35.1 5.4 25 219-243 24-49 (66)
114 PF01190 Pollen_Ole_e_I: Polle 79.2 2.7 5.9E-05 39.7 4.4 35 904-938 16-54 (97)
115 KOG3006 Transthyretin and rela 78.2 16 0.00035 35.6 9.0 91 807-898 21-129 (132)
116 COG1470 Predicted membrane pro 77.5 1.7E+02 0.0038 35.3 30.8 89 481-580 215-308 (513)
117 smart00634 BID_1 Bacterial Ig- 75.1 9.1 0.0002 35.7 6.7 63 804-868 17-86 (92)
118 PRK15294 putative fimbrial out 74.5 36 0.00079 44.9 14.3 108 840-950 701-814 (845)
119 KOG4802 Adhesion-type protein 73.5 16 0.00035 42.7 9.2 114 841-957 204-338 (516)
120 PF00041 fn3: Fibronectin type 73.1 15 0.00033 32.5 7.5 50 905-954 26-77 (85)
121 PRK15310 fimbrial outer membra 71.6 30 0.00066 44.7 11.8 37 275-313 786-822 (895)
122 PRK15207 long polar fimbrial o 71.6 64 0.0014 42.6 15.4 108 840-950 698-811 (842)
123 PF13750 Big_3_3: Bacterial Ig 69.6 1.3E+02 0.0027 31.4 14.2 106 393-504 7-132 (158)
124 PRK12813 flgD flagellar basal 69.4 19 0.0004 39.6 8.3 45 95-139 121-173 (223)
125 PRK15235 outer membrane fimbri 68.5 35 0.00075 44.9 12.0 98 762-861 668-783 (814)
126 PF12866 DUF3823: Protein of u 68.3 53 0.0011 36.2 11.5 118 69-193 16-154 (222)
127 TIGR03503 conserved hypothetic 68.2 2.6E+02 0.0056 33.2 18.4 48 482-539 168-219 (374)
128 COG3188 FimD P pilus assembly 67.5 62 0.0013 42.6 13.8 108 839-950 693-806 (835)
129 PF13860 FlgD_ig: FlgD Ig-like 67.1 15 0.00032 33.5 6.0 45 95-139 22-77 (81)
130 PRK15304 putative fimbrial out 67.0 69 0.0015 42.1 14.3 107 216-323 658-769 (801)
131 PRK15223 pilin outer membrane 66.3 55 0.0012 43.2 13.3 106 216-324 695-808 (836)
132 PF01190 Pollen_Ole_e_I: Polle 64.5 10 0.00022 35.9 4.5 41 94-135 18-62 (97)
133 COG3188 FimD P pilus assembly 64.5 1.3E+02 0.0028 39.8 15.8 104 215-319 692-800 (835)
134 PRK15207 long polar fimbrial o 64.5 71 0.0015 42.2 13.7 107 217-324 698-811 (842)
135 PF06427 UDP-g_GGTase: UDP-glu 64.2 12 0.00026 40.8 5.6 70 34-110 127-201 (211)
136 PRK15198 outer membrane usher 63.1 95 0.0021 41.2 14.5 105 840-950 715-825 (860)
137 PRK06655 flgD flagellar basal 62.6 39 0.00085 37.2 9.2 45 95-139 123-178 (225)
138 PRK15223 pilin outer membrane 62.4 99 0.0021 40.9 14.5 109 838-950 694-808 (836)
139 PF10179 DUF2369: Uncharacteri 62.4 1.2E+02 0.0026 34.8 13.3 114 930-1050 12-146 (300)
140 PRK15284 putative fimbrial out 62.1 77 0.0017 42.1 13.5 107 217-324 706-817 (881)
141 PRK15213 fimbrial outer membra 62.1 98 0.0021 40.7 14.3 125 216-349 665-794 (797)
142 PRK15298 fimbrial outer membra 61.7 1.1E+02 0.0025 40.4 14.9 109 839-950 706-820 (848)
143 PRK15248 fimbrial outer membra 60.8 66 0.0014 42.6 12.5 108 216-324 709-821 (853)
144 PF01835 A2M_N: MG2 domain; I 60.3 35 0.00076 32.0 7.4 42 99-140 37-86 (99)
145 PF11589 DUF3244: Domain of un 60.2 22 0.00047 34.3 6.0 48 95-142 45-96 (106)
146 PRK15217 fimbrial outer membra 58.6 86 0.0019 41.4 13.0 107 215-324 688-801 (826)
147 PF10179 DUF2369: Uncharacteri 56.1 1.1E+02 0.0024 35.2 11.6 106 842-951 11-146 (300)
148 PRK15294 putative fimbrial out 55.8 93 0.002 41.2 12.6 105 217-324 701-814 (845)
149 PRK15273 putative fimbrial out 55.8 1E+02 0.0022 41.1 12.9 105 217-324 683-794 (881)
150 KOG2740 Clathrin-associated pr 52.9 1.1E+02 0.0024 35.7 10.7 156 765-938 252-417 (418)
151 PF14347 DUF4399: Domain of un 52.1 31 0.00067 32.2 5.3 48 280-328 25-72 (87)
152 PRK15284 putative fimbrial out 51.1 2E+02 0.0043 38.3 14.5 106 840-950 706-817 (881)
153 PRK09828 putative fimbrial out 50.4 1.4E+02 0.003 39.7 13.0 105 217-324 718-829 (865)
154 PRK15205 long polar fimbrial p 49.7 1.1E+02 0.0024 32.2 9.9 98 1-109 1-122 (176)
155 PF11008 DUF2846: Protein of u 49.0 82 0.0018 30.8 8.2 39 289-328 40-78 (117)
156 PRK12813 flgD flagellar basal 49.0 90 0.002 34.4 9.2 12 492-503 162-173 (223)
157 PRK15310 fimbrial outer membra 48.8 1.2E+02 0.0027 39.4 11.4 120 803-938 692-822 (895)
158 PRK06655 flgD flagellar basal 47.6 85 0.0019 34.6 8.8 13 397-409 167-179 (225)
159 PF06488 L_lac_phage_MSP: Lact 47.4 1.9E+02 0.0041 31.0 10.7 40 381-428 256-297 (301)
160 PF04151 PPC: Bacterial pre-pe 46.9 60 0.0013 28.4 6.2 19 844-862 50-68 (70)
161 TIGR03000 plancto_dom_1 Planct 46.5 58 0.0013 29.5 5.9 36 290-325 11-49 (75)
162 KOG3306 Predicted membrane pro 46.1 29 0.00064 35.9 4.5 41 292-334 13-56 (185)
163 PRK15273 putative fimbrial out 45.5 2.6E+02 0.0056 37.3 14.2 106 840-950 683-794 (881)
164 PF05688 DUF824: Salmonella re 45.5 34 0.00073 28.2 3.9 30 808-837 14-43 (47)
165 PF01835 A2M_N: MG2 domain; I 45.4 83 0.0018 29.4 7.4 50 278-327 20-86 (99)
166 PRK15298 fimbrial outer membra 45.0 1.8E+02 0.0039 38.6 12.7 108 216-324 706-820 (848)
167 PF05751 FixH: FixH; InterPro 44.8 1.1E+02 0.0023 30.9 8.6 52 273-324 67-130 (146)
168 PF09912 DUF2141: Uncharacteri 44.7 27 0.00058 34.1 3.9 24 481-504 39-62 (112)
169 PF11008 DUF2846: Protein of u 44.2 30 0.00065 33.8 4.3 41 482-530 55-95 (117)
170 PRK12812 flgD flagellar basal 43.9 1.2E+02 0.0026 34.2 9.3 45 95-139 138-193 (259)
171 PF13953 PapC_C: PapC C-termin 43.2 41 0.00088 29.6 4.5 45 280-324 2-49 (68)
172 smart00060 FN3 Fibronectin typ 42.6 44 0.00094 28.0 4.7 26 928-953 52-77 (83)
173 PF13754 Big_3_4: Bacterial Ig 42.6 70 0.0015 26.9 5.6 28 384-411 5-35 (54)
174 PRK15248 fimbrial outer membra 42.5 2.9E+02 0.0063 36.7 14.1 106 840-950 710-821 (853)
175 PF11589 DUF3244: Domain of un 40.9 41 0.00088 32.4 4.5 48 906-954 44-95 (106)
176 PF03272 Enhancin: Viral enhan 40.7 4.4E+02 0.0096 34.6 14.9 73 807-883 445-520 (775)
177 PRK15255 fimbrial outer membra 40.2 2.6E+02 0.0057 37.0 13.1 103 218-323 690-802 (829)
178 PRK09828 putative fimbrial out 40.1 3.5E+02 0.0076 36.1 14.3 106 840-950 718-829 (865)
179 PF04234 CopC: CopC domain; I 40.1 67 0.0015 30.3 5.8 30 123-154 63-96 (97)
180 KOG0196 Tyrosine kinase, EPH ( 40.1 4E+02 0.0086 34.7 13.6 108 934-1051 399-517 (996)
181 PRK15255 fimbrial outer membra 39.9 3.5E+02 0.0075 35.9 14.2 107 841-951 690-802 (829)
182 PF06030 DUF916: Bacterial pro 39.4 1.7E+02 0.0036 29.0 8.6 53 839-893 51-104 (121)
183 PRK15193 outer membrane usher 38.9 2.3E+02 0.005 37.7 12.3 105 216-324 734-845 (876)
184 PRK15198 outer membrane usher 38.7 2.4E+02 0.0052 37.5 12.4 105 216-324 714-825 (860)
185 PRK09619 flgD flagellar basal 38.3 1.8E+02 0.0039 31.9 9.5 44 95-139 120-171 (218)
186 PF14289 DUF4369: Domain of un 37.8 3.3E+02 0.0072 25.3 10.3 49 74-135 12-64 (106)
187 PF09154 DUF1939: Domain of un 37.6 42 0.00091 28.7 3.5 31 104-135 25-55 (57)
188 KOG1692 Putative cargo transpo 37.4 85 0.0018 33.4 6.4 45 96-140 53-97 (201)
189 PRK12633 flgD flagellar basal 37.3 74 0.0016 35.2 6.4 45 95-139 126-181 (230)
190 PF09154 DUF1939: Domain of un 37.1 58 0.0013 27.9 4.3 23 383-405 34-56 (57)
191 COG1470 Predicted membrane pro 36.9 8.7E+02 0.019 29.7 28.2 100 844-951 298-404 (513)
192 PRK05842 flgD flagellar basal 35.9 67 0.0015 36.8 5.8 43 96-138 164-219 (295)
193 PF13115 YtkA: YtkA-like 35.2 1E+02 0.0022 28.0 6.1 43 282-324 28-85 (86)
194 TIGR03000 plancto_dom_1 Planct 35.1 81 0.0018 28.6 5.0 54 925-983 21-75 (75)
195 PRK15193 outer membrane usher 34.8 4.7E+02 0.01 34.9 14.2 107 838-950 733-845 (876)
196 PRK12633 flgD flagellar basal 34.0 2.1E+02 0.0045 31.8 9.2 13 397-409 170-182 (230)
197 TIGR03503 conserved hypothetic 33.7 4.7E+02 0.01 31.2 12.4 92 845-940 183-285 (374)
198 PRK15304 putative fimbrial out 33.6 5.5E+02 0.012 33.9 14.5 105 840-949 659-769 (801)
199 PF00041 fn3: Fibronectin type 32.9 3.3E+02 0.0071 23.6 9.4 27 478-504 49-76 (85)
200 PRK15213 fimbrial outer membra 32.9 5.9E+02 0.013 33.6 14.7 105 839-949 665-775 (797)
201 PRK09619 flgD flagellar basal 32.9 1.9E+02 0.0042 31.7 8.7 13 397-409 160-172 (218)
202 PRK12634 flgD flagellar basal 31.9 95 0.0021 34.2 6.1 44 96-139 120-174 (221)
203 PF10577 UPF0560: Uncharacteri 31.7 71 0.0015 41.0 5.6 54 733-796 13-67 (807)
204 PF09294 Interfer-bind: Interf 31.2 1.7E+02 0.0037 27.5 7.1 82 869-952 3-86 (106)
205 KOG3287 Membrane trafficking p 31.1 2.9E+02 0.0062 30.2 9.1 42 98-139 71-112 (236)
206 PF09912 DUF2141: Uncharacteri 30.8 84 0.0018 30.7 4.9 23 118-140 40-62 (112)
207 COG4704 Uncharacterized protei 30.6 1.8E+02 0.0038 29.4 6.9 24 840-863 71-94 (151)
208 KOG1690 emp24/gp25L/p24 family 30.4 1.3E+02 0.0028 32.3 6.4 50 96-145 63-116 (215)
209 PF03785 Peptidase_C25_C: Pept 30.1 2E+02 0.0044 26.5 6.7 46 97-145 25-75 (81)
210 PF03785 Peptidase_C25_C: Pept 29.7 1.7E+02 0.0036 27.0 6.1 40 289-330 25-73 (81)
211 PF05817 Ribophorin_II: Oligos 29.3 1.3E+03 0.029 29.6 17.4 55 898-953 294-361 (636)
212 smart00557 IG_FLMN Filamin-typ 28.8 2.7E+02 0.0058 25.9 7.8 50 96-145 30-82 (93)
213 PF14900 DUF4493: Domain of un 27.7 8.4E+02 0.018 26.7 13.6 42 852-893 61-109 (235)
214 PF14289 DUF4369: Domain of un 26.9 4.7E+02 0.01 24.2 9.4 49 353-404 12-64 (106)
215 cd00222 CollagenBindB Collagen 26.6 8.2E+02 0.018 26.2 18.3 93 392-503 49-163 (187)
216 PRK15217 fimbrial outer membra 26.4 8.9E+02 0.019 32.1 14.6 108 838-950 688-801 (826)
217 KOG1879 UDP-glucose:glycoprote 26.1 1.3E+02 0.0029 40.5 6.7 97 34-138 1001-1101(1470)
218 PF13953 PapC_C: PapC C-termin 26.0 1.1E+02 0.0025 26.8 4.4 46 811-861 1-48 (68)
219 KOG1692 Putative cargo transpo 25.2 2.2E+02 0.0048 30.5 6.9 72 169-261 40-112 (201)
220 PF10577 UPF0560: Uncharacteri 25.0 1.5E+02 0.0033 38.2 6.8 58 276-334 2-67 (807)
221 smart00557 IG_FLMN Filamin-typ 24.5 4.1E+02 0.009 24.6 8.3 42 367-408 32-76 (93)
222 PF13860 FlgD_ig: FlgD Ig-like 24.4 3.6E+02 0.0079 24.4 7.6 18 482-503 60-77 (81)
223 PF13753 SWM_repeat: Putative 23.5 1.1E+03 0.025 26.9 21.6 39 98-138 74-117 (317)
224 PF04234 CopC: CopC domain; I 23.4 3.1E+02 0.0067 25.8 7.2 41 280-325 38-79 (97)
225 PRK13211 N-acetylglucosamine-b 23.2 4.1E+02 0.0089 32.7 9.9 63 259-326 324-387 (478)
226 PF14054 DUF4249: Domain of un 23.0 1.6E+02 0.0035 33.3 6.2 47 908-954 59-110 (298)
227 COG4384 Mu-like prophage prote 22.8 4.5E+02 0.0098 28.0 8.6 50 94-144 61-111 (203)
228 PF05751 FixH: FixH; InterPro 21.6 7.2E+02 0.016 24.9 10.1 61 69-137 63-130 (146)
229 cd00063 FN3 Fibronectin type 3 21.0 1.1E+02 0.0024 26.3 3.6 24 931-954 55-78 (93)
230 PF13473 Cupredoxin_1: Cupredo 20.9 3.2E+02 0.0069 25.8 6.9 65 864-938 27-91 (104)
231 PF14054 DUF4249: Domain of un 20.7 1.9E+02 0.0042 32.7 6.3 49 95-143 58-112 (298)
232 PF13753 SWM_repeat: Putative 20.2 1.3E+03 0.029 26.3 17.7 49 275-325 63-117 (317)
233 PF06488 L_lac_phage_MSP: Lact 20.1 1.9E+02 0.0042 30.9 5.4 50 96-145 235-291 (301)
No 1
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-212 Score=1817.10 Aligned_cols=1089 Identities=38% Similarity=0.654 Sum_probs=992.1
Q ss_pred cchhhhhhHhhhhhhhcccCceEeeCCeee-----------------------------------------eEEEEEEEC
Q 001120 4 RDTLTYLLIIIYSIAAVSADSIHGCGGFVE-----------------------------------------GSFVIKVNG 42 (1150)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~ggfv~-----------------------------------------G~Y~L~~~~ 42 (1150)
--|++.||++++..+.+++|+|+||||||| |+|.|++++
T Consensus 5 ~~~~vvlLI~ls~~a~~sed~VvgCgGfVkSd~eidyS~ievkL~Tk~G~lKd~tdcaPsNGYfmIPvYdKGdyiLkIsp 84 (1165)
T KOG1948|consen 5 CHMGVVLLILLSLLAPGSEDNVVGCGGFVKSDSEIDYSQIEVKLLTKEGHLKDETDCAPSNGYFMIPVYDKGDYILKISP 84 (1165)
T ss_pred eeehhhhhhhhhcccCCceeeEEeccceeecCCccceeeEEEEEEeeccccccccccCCCCceEEEEEecCCcEEEEecC
Confidence 347788888899999999999999999999 999999999
Q ss_pred CCCcccCCceEEEEEcC--CCcCCcceeeEEEeCceEEEEEEeecCCccccCCCCCCcceEEEEEeCCCceEEEEEeCCC
Q 001120 43 PEGWSWNPDKVAVTVDD--TGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSE 120 (1150)
Q Consensus 43 P~Gw~f~p~~v~v~Vd~--~~~s~~~dinf~~~g~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g~~i~~ttTd~~ 120 (1150)
|+||+|+|++++++||+ |.|++|.||||.|+||+|+|+|..+. +.+++||.|+|++..+. ++++.|+++
T Consensus 85 P~GwsfePd~Vel~vDGktd~Cs~n~DinFhftGFsv~GkVlgaa--------ggGpagV~velrs~e~~-iast~T~~~ 155 (1165)
T KOG1948|consen 85 PAGWSFEPDSVELKVDGKTDACSLNEDINFHFTGFSVRGKVLGAA--------GGGPAGVLVELRSQEDP-IASTKTEDG 155 (1165)
T ss_pred CCCccccCceEEEEeccccccccCCCceEEEEeeeeEeeEEeecc--------CCCcccceeecccccCc-ceeeEecCC
Confidence 99999999999999997 79999999999999999999999873 36899999999987654 889999999
Q ss_pred ceEEEccccCccEEEEEEcCCceEEeeccEEEEEcccceeeeeeeeecCcEEEEEEEeCCcceeceEEEEEECCCCcccC
Q 001120 121 GSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDC 200 (1150)
Q Consensus 121 G~f~f~~L~pG~Y~l~a~~~g~~~~~~~~~~V~v~~~~~~~~~~l~i~g~~i~G~V~~~G~Pl~Ga~V~L~~~~~~~~~~ 200 (1150)
|.|.|.+++||+|.|+++|+.|++..++.+.|.+...+..+++.|.+.||++.|+|+.+|.|+.|+.++|+..+.....|
T Consensus 156 Gky~f~~iiPG~Yev~ashp~w~~~~ag~tvvev~~a~~~va~~f~VsGydl~gsv~s~s~P~~gv~~~l~s~~v~~~dv 235 (1165)
T KOG1948|consen 156 GKYEFRNIIPGKYEVSASHPAWECISAGKTVVEVKNAPVVVAPNFKVSGYDLEGSVRSESMPFVGVVMTLYSTSVIDLDV 235 (1165)
T ss_pred CeEEEEecCCCceEEeccCcceeEeecCcEEEEeCCCccccCCceEEEeeeeEEEEeccCCcccceEEEEEEcccccccC
Confidence 99999999999999999999999986666778877666778899999999999999999999999999999987555444
Q ss_pred CCCCCC-cc----c-ccceeeEEEeCCCceEEECccCCeeEEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEEec
Q 001120 201 PQGSGN-AL----G-ERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTG 274 (1150)
Q Consensus 201 ~~g~~~-~~----~-~g~~~~~a~TDa~G~f~f~~LppG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g 274 (1150)
.+..++ +| . ....+|.+++|++|+|.|.++|+|.|.+.+.|.+++..||++|..++++|+++++++++.|+++|
T Consensus 236 pkc~gs~ap~n~~a~e~vslc~~vsd~~G~fsfksvPsGkY~l~a~y~ge~~~fdvSP~~l~v~Vehd~lqi~~ef~vtg 315 (1165)
T KOG1948|consen 236 PKCVGSEAPLNVPATENVSLCIGVSDPRGRFSFKSVPSGKYYLAASYVGEPKSFDVSPNPLKVVVEHDHLQIASEFRVTG 315 (1165)
T ss_pred CccccCCCCCCCCcccceeeEEEEEcCCceEEEEEcCCCCEEEEEEecCCceEEEeCCCceeEEEeccceeccceeEEEE
Confidence 443322 21 1 22368999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeC-CCccccCeEEEEcceeeeEeCCCceEEECc-cCCccEEEEEEeccccccceeeEEEcCCcceeeeEEEe
Q 001120 275 FSVGGRVVDE-NDMGVEGVKILVDGHERSITDRDGYYKLDQ-VTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAI 352 (1150)
Q Consensus 275 ~sV~G~V~d~-~G~plaGA~V~l~G~~~~~TD~dG~f~l~~-L~pG~Ytv~~~~~~y~~~~~~~v~v~p~~~~i~dI~~~ 352 (1150)
|+++|||++. +|.|++||.|.+||+..+.||++|+|+|+| +..|+|+|++.+++++|++. .+++.|++++++||++.
T Consensus 316 fSvtGRVl~g~~g~~l~gvvvlvngk~~~kTdaqGyykLen~~t~gtytI~a~kehlqFstv-~~kv~pntasLpdI~a~ 394 (1165)
T KOG1948|consen 316 FSVTGRVLVGSKGLPLSGVVVLVNGKSGGKTDAQGYYKLENLKTDGTYTITAKKEHLQFSTV-HAKVKPNTASLPDITAQ 394 (1165)
T ss_pred EEeeeeEEeCCCCCCccceEEEEcCcccceEcccceEEeeeeeccCcEEEEEeccceeeeeE-EEEecCCcccccccccc
Confidence 9999999997 999999999999999999999999999999 78999999999999999999 59999999999999999
Q ss_pred eeEEEEEEEEcCCcccEEEEEEcCCCcceeeeeeeCC-CeEEEEEEcCeeEEEEEEeecCCCCCceeeeCceEEEEE-cC
Q 001120 353 SYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDN-NGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVV-KS 430 (1150)
Q Consensus 353 ~~~V~G~V~~~~~~~~a~Vtl~~g~~~~~~~~~~Td~-dG~f~f~L~pG~Y~l~~~~~~~~~~~G~~~~p~~~~V~V-~~ 430 (1150)
.|+|||+|+... .++.+.|+....+.+....+|++ ||+|||.++||.|+|+++.++++.++|++|.|..++++| +.
T Consensus 395 ~fdiCGqV~~~~--k~~nv~lt~~~s~~k~s~~~t~etdGsfCf~vppG~ytievl~~ta~~aagl~l~P~~~~veV~~~ 472 (1165)
T KOG1948|consen 395 KFDICGQVEKSE--KGVNVKLTFTRSDDKRSLEITPETDGSFCFPVPPGLYTIEVLDKTASGAAGLLLTPRLLEVEVLKN 472 (1165)
T ss_pred ceeeeeEEEEcc--ccceeEEEEccCccccccccccccCCceeEEcCCccEEEEEeccCcccccccEeeeeeeeEEeecC
Confidence 999999998654 45556665333323333344444 499999999999999999999999999999999999999 68
Q ss_pred cccceEEEEeeeEEEEEEEeccCCCCceEEEEEEeCCccccCCcceeEEEecCCCcEEEcccCCccEEEEEEeecccccc
Q 001120 431 PLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASS 510 (1150)
Q Consensus 431 p~~~I~F~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v~~~~~~~~~~~ 510 (1150)
|+++|.|+|++++|+|.++|++.|+ .+.|+|+..... ....+.++.+|+.+.|.|+|++||+|+++++
T Consensus 473 pv~ni~Fsqfranv~g~lsCl~tCg-~a~vtlq~la~G---q~~~~~vk~td~~~~ftF~nilPGkY~~~i~-------- 540 (1165)
T KOG1948|consen 473 PVTNIRFSQFRANVNGHLSCLGTCG-TATVTLQLLAAG---QTLVRSVKGTDESSVFTFENILPGKYSARID-------- 540 (1165)
T ss_pred cccceehhhhhhccceEEEeccCCC-ceeEEEEecccC---CcceeeEEEEeeccEEEeeccCCcceEEEec--------
Confidence 9999999999999999999999999 799999877322 2355667778999999999999999999997
Q ss_pred cCCCeeEEceEEEEEEecCcccceeEEEeeeEEEEeeccceeEEEEecCCCeee---EEEeccceeEEecCCceEEEEEe
Q 001120 511 MEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVP---LKVKKGSQHICVESPGVHNLHFV 587 (1150)
Q Consensus 511 ~~~~~c~~~~~~~v~V~~~~~~~v~F~q~Gy~~~i~ssh~~~~~~~~~~~~~~~---l~l~kG~~~~c~~~~G~Y~~~~~ 587 (1150)
|+++|||+.++++++|.++++.+++|+|+|||++|++||+++++|+|++|+..+ ++|.||.|+||+++||.|.+.+
T Consensus 541 d~~~wCwe~ss~~lnV~~~d~~aieFvqkGy~~~iisSH~a~~e~~h~dg~~en~~~lki~kgvn~iCv~kpGs~~~~~- 619 (1165)
T KOG1948|consen 541 DNGRWCWEKSSMTLNVEQSDTQAIEFVQKGYAAQIISSHPAEIEWSHADGKQENGKTLKIGKGVNSICVPKPGSYDVSL- 619 (1165)
T ss_pred cCCCceeecceEEEEeecccccccceeeccEEEEEEecCceeeEEecCCCCCCCcceEEecCcceEEEccCCccceeec-
Confidence 378999999999999999999999999999999999999999999999988665 8999999999999999999997
Q ss_pred ccceecCCCcEEEeCCCCceEEEEEEEeEEEEEEEEeecCCCcccCCCcceEEEEecCCCceeecccccccCCCCCCCCc
Q 001120 588 NPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSY 667 (1150)
Q Consensus 588 ~sc~~f~~~~~~~~t~~~~~i~l~~~~~~~~G~i~l~~~~~~~~~~~~~~i~v~~~~~~g~~i~~~~~~~~~~~~~~~~~ 667 (1150)
.+||.|+.+++++++..+.+.+++++..++.|.|.+...+... ...+++.++++++..+.+| +..++..+.| +++
T Consensus 620 ~sc~tfd~sspki~v~~~~~hh~ka~i~~~k~~i~ve~~kt~~-~s~~~k~v~e~~~~k~evi---t~~a~~~avD-~G~ 694 (1165)
T KOG1948|consen 620 GSCYTFDRSSPKITVPFDGVHHEKAVIARIKGTIDVENDKTAA-VSIREKFVVEIQDIKSEVI---TREAQVPAVD-NGR 694 (1165)
T ss_pred cceeecccCCceeecCCCcchHhHhhhhhhccceeeeeccccc-ccchhhhhhhhhhhccccc---Cccccccccc-CCc
Confidence 9999999999999999999999999999999999877654221 2456788999999999888 4444333333 279
Q ss_pred ceEEEEEeccCCCeEEEEeCCCCCCCceeeeeeceeEEEEEeCCCcccccceeeeccceEEeceecCCCCceEEEEEecc
Q 001120 668 AVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAE 747 (1150)
Q Consensus 668 ~~y~~~~~a~~g~~~~v~P~s~~~~~~~~llF~P~s~~v~v~~~~c~~~~~~f~~~~G~~i~G~v~p~l~gv~i~i~~~~ 747 (1150)
+.|+|.+||++||+|+|+|+| |.|||||+++++.|+++ |+..+.+|.+++|+||+|+|.|||+||+|+|+.++
T Consensus 695 f~yey~twas~gekl~ivPss------k~lLFyP~s~eavvS~d-C~~~a~~f~g~rGLfL~Gsi~Palega~Ikis~kk 767 (1165)
T KOG1948|consen 695 FTYEYPTWASSGEKLVIVPSS------KLLLFYPTSKEAVVSGD-CIENAVKFNGFRGLFLDGSIKPALEGAVIKISLKK 767 (1165)
T ss_pred ceEechhhcCCCceEEEeecc------ceeeecCCceEEEEecc-cchhheeecceeeEEEcceeccCCCCcEEEEEecC
Confidence 999999999999999999998 89999999999999876 99999999999999999999999999999999998
Q ss_pred chhhhhccccceeEEEEeCCCceEEeccCCCCceEEEEEeCCCeEEeeec--cceeEEeeeeeEEEEEEecCCCCCcccc
Q 001120 748 DSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVG--PNSFSCQKLSQISVRIYSKDDAGEPIPS 825 (1150)
Q Consensus 748 ~~~~~~~~~~~~~~~~~Td~~G~f~~gpL~~~~~y~v~a~k~gy~l~~~~--~~~f~~~kl~~i~v~v~~~~~~~~pl~g 825 (1150)
++ ++.+++.|+++|.|++|||+++..|.++|+||||+|++++ +++|+++||++|++.+.|++ ++||+|
T Consensus 768 ds--------~~~Iev~T~~~Gafk~GPl~~dl~yd~tA~kegyvft~~~~t~~sfqa~kl~~vsv~vkdea--~q~Lpg 837 (1165)
T KOG1948|consen 768 DS--------DVVIEVITNKDGAFKIGPLKRDLDYDITATKEGYVFTPTSPTPGSFQAVKLSQVSVKVKDEA--TQPLPG 837 (1165)
T ss_pred CC--------ceeEEEEEcCCCcEEecccccccccceeeccCceEEecCCCCccceeeeeeeEEEEEEeccC--CCcCCc
Confidence 86 7899999999999999999999999999999999999987 48999999999999999986 699999
Q ss_pred eEEEEeCCCccccceeecCCceEEEeecCCcceEEeecccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCC
Q 001120 826 VLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLS 905 (1150)
Q Consensus 826 vllslsg~~~~r~n~~t~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~ 905 (1150)
|||||||+++||+|++|+++|.+.|++|+||+||||||||||+|+|+++||+|+|||+.++.|+|+|+||||||+|.+||
T Consensus 838 vLLSLsGg~~yRsNlvtgdng~~nf~sLsPgqyylRpmlKEykFePst~mIevkeGq~~~vvl~gkRvAySayGtvssLs 917 (1165)
T KOG1948|consen 838 VLLSLSGGKDYRSNLVTGDNGHKNFVSLSPGQYYLRPMLKEYKFEPSTSMIEVKEGQHENVVLKGKRVAYSAYGTVSSLS 917 (1165)
T ss_pred EEEEEecCcchhhccccCCCceeEEeecCcchhhhhhHHHhcCcCCCceeEEeccCceEEEEEEEEEEEEEeeeehhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcEEEEEeCC-CceeEEEeeCCCceEEecCCCCCcEEEEEEEEecCCCCcceeccCCceEEEEecCccceeceEE
Q 001120 906 GQPKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFL 984 (1150)
Q Consensus 906 g~p~~gv~v~~~~~~-~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~~~~~~~~~~~i~~~~p~~~~v~v~~~d~~~~~f~ 984 (1150)
|+|++||.+||++++ ..++||+|||+||+||||||+|||.|.|++++.. ++++|||++|++++|+|+++||+|+||+
T Consensus 918 Gdp~~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~--~n~~iers~P~s~tv~vgneDv~glnf~ 995 (1165)
T KOG1948|consen 918 GDPMKGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYA--DNSPIERSFPRSFTVSVGNEDVKGLNFM 995 (1165)
T ss_pred CCcccCeEEEEecCCCCccccccccccCCcEEEeccCCCceEEEEEeecc--CCCcccccCCceEEEEecccccCCceEE
Confidence 999999999999998 7799999999999999999999999999999875 4899999999999999999999999999
Q ss_pred EEecCCcEEEEEEEEeccccccccceEEEE-EecCCCCceEEEEeeCCceeEEeecCCCC--cEEEEEEecCCCcceeee
Q 001120 985 VFEQPEKTILSGHVEGNRIKELNSHLLVEI-KSASDTSKVESVISLPMSNFFQVKDLPKG--KHLLQLRSSLPSSTHRFE 1061 (1150)
Q Consensus 985 ~~~~~~~~~i~g~V~~~~~~~~~~~l~v~l-~~~~~~~~v~~~~~~~~~~~f~~~~l~~~--~y~v~l~s~l~~~~~~~~ 1061 (1150)
+|++++++||+|+|.++. .|++++++|.| |+.+++++|++ +..++ .+++||+||++ +|+|+|+|+||.++|+|+
T Consensus 996 af~q~kttdit~~V~~~~-ne~l~sl~vv~yKs~nddspv~s-v~~gq-l~~ffp~l~~dg~~yvV~l~Stlp~~~y~yk 1072 (1165)
T KOG1948|consen 996 AFIQAKTTDITVEVGMDT-NEELQSLRVVIYKSNNDDSPVAS-VVAGQ-LLHFFPNLPRDGVEYVVRLESTLPPQAYAYK 1072 (1165)
T ss_pred EEeccceEEEEEEEcccc-cccccceEEEEEecCCCCCcceE-Eeccc-eeeeccccCCCCceEEEEEeccCCchheeee
Confidence 999999999999999986 57778888877 99999999999 55555 78888889886 799999999999999994
Q ss_pred eeeEEEEEEecc-eEEEEEeEEeeeeccccccCCCCCchHhHHHHHHHHHH---------HhhHHHHHHHHhccCCCCCC
Q 001120 1062 SEIIEVDLEKNA-QIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLF---------ISMPRLKDLYQAAMGIPTPG 1131 (1150)
Q Consensus 1062 ~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 1131 (1150)
++ .|.|.. ++|+ .|.|.|++|..|+|++|++++||+|+++|+++| +++|+++|++++..+.++.+
T Consensus 1073 --lp--~fva~~~~k~a-~l~f~p~rra~eaDi~q~s~~al~l~~lvalaffnqd~~~~lLsi~s~ld~vrat~a~~sdn 1147 (1165)
T KOG1948|consen 1073 --LP--RFVADQAMKVA-RLPFTPSRRANEADISQGSFLALPLFVLVALAFFNQDRVLELLSIPSFLDWVRATFAPTSDN 1147 (1165)
T ss_pred --cc--EEEeecceEEE-EEEeCccccccccccccCcEehhHHHHHHHHHHhchhhhhhhhcchhHHHHHHhhccccCCC
Confidence 55 888877 8888 899999999999999999999999999999987 47888999999999999999
Q ss_pred CccccccccCCccccccc
Q 001120 1132 FIATAKKEARKPVVRKKT 1149 (1150)
Q Consensus 1132 ~~~~~~~~~~~~~~~~~~ 1149 (1150)
.+-..||||||...||||
T Consensus 1148 ~t~~rk~ep~k~~~~~kt 1165 (1165)
T KOG1948|consen 1148 HTRKRKREPRKAVARKKT 1165 (1165)
T ss_pred CChhhhcchhhhhhhccC
Confidence 988889999999999986
No 2
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-48 Score=447.84 Aligned_cols=908 Identities=19% Similarity=0.241 Sum_probs=585.6
Q ss_pred ccCceEeeCCeeeeEEEEEEECCCCcccCCceEE-EEEcCCCcCCcceeeEEEeCceEEEEEEeecCCccccCCCCCCcc
Q 001120 21 SADSIHGCGGFVEGSFVIKVNGPEGWSWNPDKVA-VTVDDTGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSN 99 (1150)
Q Consensus 21 ~~~~~~g~ggfv~G~Y~L~~~~P~Gw~f~p~~v~-v~Vd~~~~s~~~dinf~~~g~~IsG~V~~~~G~~s~~~~g~plaG 99 (1150)
++++.|.+---.+|+|.+++++|. |.+..+.-. +.+... +...+-+|...||.+.|+|.+. +.|+.|
T Consensus 153 ~~~Gky~f~~iiPG~Yev~ashp~-w~~~~ag~tvvev~~a--~~~va~~f~VsGydl~gsv~s~---------s~P~~g 220 (1165)
T KOG1948|consen 153 EDGGKYEFRNIIPGKYEVSASHPA-WECISAGKTVVEVKNA--PVVVAPNFKVSGYDLEGSVRSE---------SMPFVG 220 (1165)
T ss_pred cCCCeEEEEecCCCceEEeccCcc-eeEeecCcEEEEeCCC--ccccCCceEEEeeeeEEEEecc---------CCcccc
Confidence 445566655555699999999998 998865544 344333 3456778999999999999875 479999
Q ss_pred eEEEEEeCC-C---------------------ceEEEEEeCCCceEEEccccCccEEEEEEcCCce--EEeecc-EEEEE
Q 001120 100 VNVELLSHS-G---------------------DLISSVITSSEGSYLFKNIIPGKYKLRASHPNLS--VEVRGS-TEVEL 154 (1150)
Q Consensus 100 v~V~L~~~~-g---------------------~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~g~~--~~~~~~-~~V~v 154 (1150)
+.+.|+..+ + ...+-+.+|++|+|+|..||.|+|.|.+.+-|.. +.+.+. ..|+|
T Consensus 221 v~~~l~s~~v~~~dvpkc~gs~ap~n~~a~e~vslc~~vsd~~G~fsfksvPsGkY~l~a~y~ge~~~fdvSP~~l~v~V 300 (1165)
T KOG1948|consen 221 VVMTLYSTSVIDLDVPKCVGSEAPLNVPATENVSLCIGVSDPRGRFSFKSVPSGKYYLAASYVGEPKSFDVSPNPLKVVV 300 (1165)
T ss_pred eEEEEEEcccccccCCccccCCCCCCCCcccceeeEEEEEcCCceEEEEEcCCCCEEEEEEecCCceEEEeCCCceeEEE
Confidence 999998542 1 2357799999999999999999999999886653 334444 88999
Q ss_pred cccceeeeeeeeecCcEEEEEEEe--CCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECc-cC
Q 001120 155 GFENGEVDDIFFAPGYEIRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKS-VP 231 (1150)
Q Consensus 155 ~~~~~~~~~~l~i~g~~i~G~V~~--~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~-Lp 231 (1150)
..+...+.+.+.+.|++++|||+. .|.|++||.|.+..+ ....||++|.|+++| +.
T Consensus 301 ehd~lqi~~ef~vtgfSvtGRVl~g~~g~~l~gvvvlvngk---------------------~~~kTdaqGyykLen~~t 359 (1165)
T KOG1948|consen 301 EHDHLQIASEFRVTGFSVTGRVLVGSKGLPLSGVVVLVNGK---------------------SGGKTDAQGYYKLENLKT 359 (1165)
T ss_pred eccceeccceeEEEEEEeeeeEEeCCCCCCccceEEEEcCc---------------------ccceEcccceEEeeeeec
Confidence 999888888999999999999995 589999999988765 468899999999999 88
Q ss_pred CeeEEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEEeceEEEEEEEeCCCccccCeEEEE-----cceee-eEeC
Q 001120 232 CGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDENDMGVEGVKILV-----DGHER-SITD 305 (1150)
Q Consensus 232 pG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V~d~~G~plaGA~V~l-----~G~~~-~~TD 305 (1150)
.|+|+|.+ .+++++|+ ++.+.+..+.+.+++ +.+.+|.|+|+|.-.. .++.+.+ +.+.. -.|+
T Consensus 360 ~gtytI~a--~kehlqFs----tv~~kv~pntasLpd-I~a~~fdiCGqV~~~~----k~~nv~lt~~~s~~k~s~~~t~ 428 (1165)
T KOG1948|consen 360 DGTYTITA--KKEHLQFS----TVHAKVKPNTASLPD-ITAQKFDICGQVEKSE----KGVNVKLTFTRSDDKRSLEITP 428 (1165)
T ss_pred cCcEEEEE--eccceeee----eEEEEecCCcccccc-ccccceeeeeEEEEcc----ccceeEEEEccCcccccccccc
Confidence 99999999 56777776 345677777777875 8888999999996552 3444444 22322 2444
Q ss_pred CC-ceEEECccCCccEEEEEEecc------ccccceeeEEEcCCcceeeeEEEeee--EEEEEEEEcCCcccEEEEEEc-
Q 001120 306 RD-GYYKLDQVTSNRYTIEAVKVH------YKFNKLKEYMVLPNMASIADIKAISY--DICGVVRTVGSGNKVKVALTH- 375 (1150)
Q Consensus 306 ~d-G~f~l~~L~pG~Ytv~~~~~~------y~~~~~~~v~v~p~~~~i~dI~~~~~--~V~G~V~~~~~~~~a~Vtl~~- 375 (1150)
+. |.|+| .++||.|+|++..+. ..|.+. .+.+.-...++.+|.|.++ +++|.+.|.+.|+.+.|+|..
T Consensus 429 etdGsfCf-~vppG~ytievl~~ta~~aagl~l~P~-~~~veV~~~pv~ni~Fsqfranv~g~lsCl~tCg~a~vtlq~l 506 (1165)
T KOG1948|consen 429 ETDGSFCF-PVPPGLYTIEVLDKTASGAAGLLLTPR-LLEVEVLKNPVTNIRFSQFRANVNGHLSCLGTCGTATVTLQLL 506 (1165)
T ss_pred ccCCceeE-EcCCccEEEEEeccCcccccccEeeee-eeeEEeecCcccceehhhhhhccceEEEeccCCCceeEEEEec
Confidence 44 99999 799999999987654 223332 1222222335678999887 899999999999999999963
Q ss_pred CCCcce-eeeeeeCCCeEEEEE-EcCeeEEEEEEeecCCCCCceeeeCceEEEEE-cCcccceEEEEeeeEEEEEEEecc
Q 001120 376 GPDKVK-PQVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVV-KSPLLNIEFSQALVNVLGNVACKE 452 (1150)
Q Consensus 376 g~~~~~-~~~~~Td~dG~f~f~-L~pG~Y~l~~~~~~~~~~~G~~~~p~~~~V~V-~~p~~~I~F~q~~a~V~G~V~~~~ 452 (1150)
..|+.. ....-||..+.|.|+ +.||.|+++...- ..|||...++.++| .+.+..|.|.|.+..++
T Consensus 507 a~Gq~~~~~vk~td~~~~ftF~nilPGkY~~~i~d~-----~~wCwe~ss~~lnV~~~d~~aieFvqkGy~~~------- 574 (1165)
T KOG1948|consen 507 AAGQTLVRSVKGTDESSVFTFENILPGKYSARIDDN-----GRWCWEKSSMTLNVEQSDTQAIEFVQKGYAAQ------- 574 (1165)
T ss_pred ccCCcceeeEEEEeeccEEEeeccCCcceEEEeccC-----CCceeecceEEEEeecccccccceeeccEEEE-------
Confidence 233222 456679999999999 9999999999852 67999999999999 57778999999998877
Q ss_pred CCCCceEEEEEEeCCccccCCcceeEEEecCCCcEEEcccCCccEEEEEEeecccccccCCCeeEEceEEEEEEecCcc-
Q 001120 453 RCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDV- 531 (1150)
Q Consensus 453 ~~~~~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~c~~~~~~~v~V~~~~~- 531 (1150)
|..+|.+.++....++ ........++..+-.+||++. ||.|-+...+| |.|+.++..+.|..+..
T Consensus 575 -iisSH~a~~e~~h~dg-~~en~~~lki~kgvn~iCv~k--pGs~~~~~~sc----------~tfd~sspki~v~~~~~h 640 (1165)
T KOG1948|consen 575 -IISSHPAEIEWSHADG-KQENGKTLKIGKGVNSICVPK--PGSYDVSLGSC----------YTFDRSSPKITVPFDGVH 640 (1165)
T ss_pred -EEecCceeeEEecCCC-CCCCcceEEecCcceEEEccC--Cccceeeccce----------eecccCCceeecCCCcch
Confidence 3336777776554332 023455677778888999998 99999988654 77889999998875441
Q ss_pred --cceeEEEeeeEEEE-eeccceeEEE-----EecCCCe-e-----eEEEeccceeEE---ecCCc-eEEEEEeccceec
Q 001120 532 --KGVEFVQKGYWLNV-ISTHDVDAYM-----TQQDGSH-V-----PLKVKKGSQHIC---VESPG-VHNLHFVNPCVFF 593 (1150)
Q Consensus 532 --~~v~F~q~Gy~~~i-~ssh~~~~~~-----~~~~~~~-~-----~l~l~kG~~~~c---~~~~G-~Y~~~~~~sc~~f 593 (1150)
..+--.-+|..... .++.+....+ .|..+.. + ...+..|...+- ..++| +-.|++++--..|
T Consensus 641 h~ka~i~~~k~~i~ve~~kt~~~s~~~k~v~e~~~~k~evit~~a~~~avD~G~f~yey~twas~gekl~ivPssk~lLF 720 (1165)
T KOG1948|consen 641 HEKAVIARIKGTIDVENDKTAAVSIREKFVVEIQDIKSEVITREAQVPAVDNGRFTYEYPTWASSGEKLVIVPSSKLLLF 720 (1165)
T ss_pred HhHhhhhhhccceeeeecccccccchhhhhhhhhhhcccccCcccccccccCCcceEechhhcCCCceEEEeeccceeee
Confidence 22222223432221 2222221110 0111111 1 122222333332 23566 4777774445568
Q ss_pred CCCcEEEeCCCCce---EEEEEEEeE-EEEEEEEeecCCCcccCCCcceEEEEecCC--CceeecccccccCCCCCCCCc
Q 001120 594 GSPVLKMDTSNPSP---IYLKGEKYQ-LRGHINVQSRSPIGVHELPENIIVDILNGD--GSISNRTTATLTSPANDQTSY 667 (1150)
Q Consensus 594 ~~~~~~~~t~~~~~---i~l~~~~~~-~~G~i~l~~~~~~~~~~~~~~i~v~~~~~~--g~~i~~~~~~~~~~~~~~~~~ 667 (1150)
.+++...-.+..|+ +.+++.+++ +.|+|. |. .+++.+++.-++ -..|+-++ +..
T Consensus 721 yP~s~eavvS~dC~~~a~~f~g~rGLfL~Gsi~------Pa----lega~Ikis~kkds~~~Iev~T----------~~~ 780 (1165)
T KOG1948|consen 721 YPTSKEAVVSGDCIENAVKFNGFRGLFLDGSIK------PA----LEGAVIKISLKKDSDVVIEVIT----------NKD 780 (1165)
T ss_pred cCCceEEEEecccchhheeecceeeEEEcceec------cC----CCCcEEEEEecCCCceeEEEEE----------cCC
Confidence 88878777777776 777888877 677774 21 123333332121 22221111 122
Q ss_pred ceEEEEEeccCCCeEEEEeCCCCCCCceeeeeeceeEEEEEeCCCcccccceeeeccceEEeceecCCCCceEEEEEecc
Q 001120 668 AVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAE 747 (1150)
Q Consensus 668 ~~y~~~~~a~~g~~~~v~P~s~~~~~~~~llF~P~s~~v~v~~~~c~~~~~~f~~~~G~~i~G~v~p~l~gv~i~i~~~~ 747 (1150)
|.|.+=.. .....+.++..- .-+.|.|.+.. ..+||..- + +..-..+......||+||..+++...
T Consensus 781 Gafk~GPl-~~dl~yd~tA~k------egyvft~~~~t----~~sfqa~k--l-~~vsv~vkdea~q~LpgvLLSLsGg~ 846 (1165)
T KOG1948|consen 781 GAFKIGPL-KRDLDYDITATK------EGYVFTPTSPT----PGSFQAVK--L-SQVSVKVKDEATQPLPGVLLSLSGGK 846 (1165)
T ss_pred CcEEeccc-ccccccceeecc------CceEEecCCCC----ccceeeee--e-eEEEEEEeccCCCcCCcEEEEEecCc
Confidence 33333110 011112222221 12333322100 01121100 0 00011234445578999998886421
Q ss_pred chhhhhccccceeEEEEeCCCceEEeccCCCCceEEEEEeCCCeEEeeec--------c---ceeEEeeee-eEEEEEEe
Q 001120 748 DSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVG--------P---NSFSCQKLS-QISVRIYS 815 (1150)
Q Consensus 748 ~~~~~~~~~~~~~~~~~Td~~G~f~~gpL~~~~~y~v~a~k~gy~l~~~~--------~---~~f~~~kl~-~i~v~v~~ 815 (1150)
+.+-+.+|+++|.+.|-.|.|+ +|.+.+.+..|+|++.. . ..|...+.+ ++-.++..
T Consensus 847 ----------~yRsNlvtgdng~~nf~sLsPg-qyylRpmlKEykFePst~mIevkeGq~~~vvl~gkRvAySayGtvss 915 (1165)
T KOG1948|consen 847 ----------DYRSNLVTGDNGHKNFVSLSPG-QYYLRPMLKEYKFEPSTSMIEVKEGQHENVVLKGKRVAYSAYGTVSS 915 (1165)
T ss_pred ----------chhhccccCCCceeEEeecCcc-hhhhhhHHHhcCcCCCceeEEeccCceEEEEEEEEEEEEEeeeehhh
Confidence 4678899999999999999996 99999999899999853 1 245555544 55556654
Q ss_pred cCCCCCcccceEEE-EeCC-CccccceeecCCceEEEeecCCcceEE-eeccc---c--cccCCCceeEEecCCceEEEE
Q 001120 816 KDDAGEPIPSVLLS-LSGD-DGYRNNSVSWAGGSFHFDNLFPGNFYL-RPLLK---E--YAFSPPAQAIELGSGESREVI 887 (1150)
Q Consensus 816 ~~~~~~pl~gvlls-lsg~-~~~r~n~~t~~~G~~~f~~L~PG~Y~~-~~~~k---e--y~~~p~~~~i~v~~g~~~~v~ 887 (1150)
-+|+|..||-+. ++++ +.|-.-.+||+||+|++.+|-||+-|. +...+ + -+--|.+.+|+|..-.-..++
T Consensus 916 --LsGdp~~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~~n~~iers~P~s~tv~vgneDv~gln 993 (1165)
T KOG1948|consen 916 --LSGDPMKGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYADNSPIERSFPRSFTVSVGNEDVKGLN 993 (1165)
T ss_pred --ccCCcccCeEEEEecCCCCccccccccccCCcEEEeccCCCceEEEEEeeccCCCcccccCCceEEEEecccccCCce
Confidence 449999999997 5544 468888899999999999999998774 43322 1 233477777888766666777
Q ss_pred EEEEeeeE--eEEEeeEcCCCCccCCcEEEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEEEEecCCCCcceeccC
Q 001120 888 FQATRVAY--SATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERAS 965 (1150)
Q Consensus 888 ~~~~r~~~--s~~G~v~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~~~~~~~~~~~i~~~~ 965 (1150)
|.+.+-+- .+.+.|. +|.|= .|+- -..+..++ ++++.
T Consensus 994 f~af~q~kttdit~~V~--------------------------~~~ne-----~l~s--l~vv~yKs----~ndds---- 1032 (1165)
T KOG1948|consen 994 FMAFIQAKTTDITVEVG--------------------------MDTNE-----ELQS--LRVVIYKS----NNDDS---- 1032 (1165)
T ss_pred EEEEeccceEEEEEEEc--------------------------ccccc-----cccc--eEEEEEec----CCCCC----
Confidence 77666542 2333332 11111 1110 01112221 11110
Q ss_pred CceEEEEecCccceeceEEEEecCCcEEEEEEEEeccccccccceEEEEEecCCCCceEEEEeeCCceeEEeecCCCCcE
Q 001120 966 PESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKH 1045 (1150)
Q Consensus 966 p~~~~v~v~~~d~~~~~f~~~~~~~~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~~~v~~~~~~~~~~~f~~~~l~~~~y 1045 (1150)
.-.+|.++. -+.-|.++. .-.-.-.|+|.+ .||+-.|
T Consensus 1033 -pv~sv~~gq------l~~ffp~l~--------------~dg~~yvV~l~S----------------------tlp~~~y 1069 (1165)
T KOG1948|consen 1033 -PVASVVAGQ------LLHFFPNLP--------------RDGVEYVVRLES----------------------TLPPQAY 1069 (1165)
T ss_pred -cceEEeccc------eeeeccccC--------------CCCceEEEEEec----------------------cCCchhe
Confidence 111222222 001110000 000111233222 4677778
Q ss_pred EEEEEecCCCcceeeeeeeEEEEEEecceEEEEEeEEeeeeccccccCCCCCchHhHHH--------HHHHHHHHhhHHH
Q 001120 1046 LLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVG--------VSVIGLFISMPRL 1117 (1150)
Q Consensus 1046 ~v~l~s~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 1117 (1150)
..++- +| +++.+.++.++|++|+++.+|.++..++..+.++++|+++ +.++.+-..+...
T Consensus 1070 ~yklp--------~f----va~~~~k~a~l~f~p~rra~eaDi~q~s~~al~l~~lvalaffnqd~~~~lLsi~s~ld~v 1137 (1165)
T KOG1948|consen 1070 AYKLP--------RF----VADQAMKVARLPFTPSRRANEADISQGSFLALPLFVLVALAFFNQDRVLELLSIPSFLDWV 1137 (1165)
T ss_pred eeecc--------EE----EeecceEEEEEEeCccccccccccccCcEehhHHHHHHHHHHhchhhhhhhhcchhHHHHH
Confidence 77764 24 7888999999999999999999999999999999998877 1222333333333
Q ss_pred H-HHHHhccCCCCCCCccccccccCCc
Q 001120 1118 K-DLYQAAMGIPTPGFIATAKKEARKP 1143 (1150)
Q Consensus 1118 ~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1143 (1150)
+ .+.+++.+....+.....|+-.||.
T Consensus 1138 rat~a~~sdn~t~~rk~ep~k~~~~~k 1164 (1165)
T KOG1948|consen 1138 RATFAPTSDNHTRKRKREPRKAVARKK 1164 (1165)
T ss_pred HhhccccCCCCChhhhcchhhhhhhcc
Confidence 3 4556666777777766666655553
No 3
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.4e-27 Score=289.31 Aligned_cols=413 Identities=17% Similarity=0.272 Sum_probs=290.6
Q ss_pred CCCCCcceEEEEEeCCCc-eEEEEEeCCCceEEEccccCccEEEEEEc--CCceEEeeccEEEEEcccceeeeeeeeecC
Q 001120 93 KGGGPSNVNVELLSHSGD-LISSVITSSEGSYLFKNIIPGKYKLRASH--PNLSVEVRGSTEVELGFENGEVDDIFFAPG 169 (1150)
Q Consensus 93 ~g~plaGv~V~L~~~~g~-~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~--~g~~~~~~~~~~V~v~~~~~~~~~~l~i~g 169 (1150)
.+..|+|+.+.|++..|+ ..++.+||++|.+.|.+|.-|+|.|.+++ .||.+.......+++......+ .+...+
T Consensus 981 ~~k~LeGA~F~Lyd~~Ge~~~reitT~~dGkl~~~nL~~~dY~LiETkAPtGY~l~~~dgkeiTI~~sg~Ei--~vtkeN 1058 (1531)
T COG4932 981 TGKKLEGAKFQLYDSEGEKLGREITTDEDGKLTFDNLQYGDYKLIETKAPTGYTLDYKDGKEITISASGKEI--FVTKEN 1058 (1531)
T ss_pred ccccccccEEEEEecCCceeeeeeeecccceeeecccccceeEEEEccCCcceeeccCcccEEEEecCCcee--EEeecc
Confidence 478999999999999885 46789999999999999999999999976 4787653233566665533321 111122
Q ss_pred cEEEEEEE------eCCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECccCCeeEEEEEEEec
Q 001120 170 YEIRGLVV------AQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKG 243 (1150)
Q Consensus 170 ~~i~G~V~------~~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v~~~~~~ 243 (1150)
....|.|. +.|+-|+||.|.|.+.++.. .....+||++|...+.+|.||.|++++...+
T Consensus 1059 ~~~~g~V~L~K~D~at~~~LaGA~FeLQdk~G~~---------------l~enL~TD~~G~v~itdLaPGDYqfVEtkAP 1123 (1531)
T COG4932 1059 EAKKGSVQLTKKDSATGATLAGAEFELQDKDGNT---------------LQENLTTDEDGKVEITDLAPGDYQFVETKAP 1123 (1531)
T ss_pred cccccceeEEEecccccccccCceEEEeeccCcc---------------hhhhccccccCcEEeccccCCceeeEEecCC
Confidence 22233332 35999999999999885421 1234899999999999999999999997666
Q ss_pred CCeEEEecCceEEEEEeccceeeeccEEEeceEEEEEE----EeC-CCccccCeEEEE---cceee---eEeCCCceEEE
Q 001120 244 ENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRV----VDE-NDMGVEGVKILV---DGHER---SITDRDGYYKL 312 (1150)
Q Consensus 244 ~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V----~d~-~G~plaGA~V~l---~G~~~---~~TD~dG~f~l 312 (1150)
.++.++..|.. |++...+-. ...+........|.| +|+ .+.+|+||+|.| +|+.+ .+||++|...+
T Consensus 1124 tGY~LdatPV~--FtI~eeq~e-~~~vtKeN~~~~GsvqLtK~Ds~t~a~LaGA~Fel~d~dG~~VqegLtTD~nG~i~V 1200 (1531)
T COG4932 1124 TGYILDATPVN--FTISEEQDE-AAKVTKENTLKPGSVQLTKVDSATKATLAGAEFELQDEDGTLVQEGLTTDENGKINV 1200 (1531)
T ss_pred ceeEecCccce--eEeeccCCc-eeEEeecccccccceEEEEecccccccccCcEEEEEcCCCcEeeccceecCCCcEEe
Confidence 66666666654 555432111 111222222334555 455 789999999999 67666 49999999999
Q ss_pred CccCCccEEE-EEEec-ccccccee-eEEEcCCcceeeeEEEeeeEEEEEEEEcCC-------cccEEEEEEcCCCccee
Q 001120 313 DQVTSNRYTI-EAVKV-HYKFNKLK-EYMVLPNMASIADIKAISYDICGVVRTVGS-------GNKVKVALTHGPDKVKP 382 (1150)
Q Consensus 313 ~~L~pG~Ytv-~~~~~-~y~~~~~~-~v~v~p~~~~i~dI~~~~~~V~G~V~~~~~-------~~~a~Vtl~~g~~~~~~ 382 (1150)
.+|.||+|++ +..+| +|..+... .+.+.-++.++.-+..++..+.|+|..... .++|...|.+..+....
T Consensus 1201 tdL~PGdYqFVETkAP~GY~LdatP~~FtI~~~q~ev~~V~~en~~~pgsv~L~k~d~~~~~~l~~a~fkl~~~eg~~vq 1280 (1531)
T COG4932 1201 TDLAPGDYQFVETKAPTGYILDATPTPFTIEFNQEEVVKVVKENTAIPGSVVLTKKDSDTGAALSGAEFKLLDAEGTTVQ 1280 (1531)
T ss_pred cccCCcceeeeeecCCcceeeccccceeEEeccccceeEEeeccccCCCCceeeccCCCcccccCCCceeeecCCCcEec
Confidence 9999999995 55555 58776552 345555555555666666778888875432 24677777777776555
Q ss_pred eeeeeCCCeEEEEE-EcCeeEEEEEEeecCCCCCceeeeCceEEEEEc-CcccceEEEEeeeEEEEEEEecc--C----C
Q 001120 383 QVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVVK-SPLLNIEFSQALVNVLGNVACKE--R----C 454 (1150)
Q Consensus 383 ~~~~Td~dG~f~f~-L~pG~Y~l~~~~~~~~~~~G~~~~p~~~~V~V~-~p~~~I~F~q~~a~V~G~V~~~~--~----~ 454 (1150)
...+||++|..... |.||.|++.++++ +.||.+...++.++|. .....+......-.+.|.|.+.. . .
T Consensus 1281 e~L~td~~Gei~v~dlkpGdyqfVETkA----p~Gy~L~a~pv~ftI~~~q~e~~kV~~~n~~~~gsv~l~k~d~~~~~~ 1356 (1531)
T COG4932 1281 EGLTTDETGEIVVADLKPGDYQFVETKA----PEGYILDATPVNFTIEFNQEEAVKVTKENDAKTGSVVLTKLDSSSGVT 1356 (1531)
T ss_pred cCceecCCCcEEecccCCCcccceEccC----CcceEEeecceeEEEEecccccEEEEEeeccccccEEEEEeecccCcc
Confidence 67899999999999 9999999999984 6899998888888772 22222222222223445554432 1 1
Q ss_pred CCceEEEEEEeCCccccCCcceeEEEecCCCcEEEcccCCccEEEEEEeecccccccCCCeeEEceEEEEEEecCc--cc
Q 001120 455 GPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTND--VK 532 (1150)
Q Consensus 455 ~~~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~c~~~~~~~v~V~~~~--~~ 532 (1150)
..++.+.|+...+. ..+.-.+||++|+..+.||.||.|++.++++ |.+|..+.+++.++|.-++ ..
T Consensus 1357 LegA~F~l~de~g~-----ilke~l~t~~nG~l~v~dLaPGdYqfvETkA-------PtgY~Ld~tpv~FTIe~~q~e~~ 1424 (1531)
T COG4932 1357 LEGAEFELLDEEGN-----ILKEGLVTDENGQLLVDDLAPGDYQFVETKA-------PTGYELDATPVDFTIEFNQEEAL 1424 (1531)
T ss_pred ccCcEEEEEcccCc-----eehhcceeCCCCcEEEeecCCCceeeEEccC-------CcceeccCCceEEEEEcCcccce
Confidence 13778888766553 2333446899999999999999999999987 8899999999999987443 34
Q ss_pred ceeEEEeee
Q 001120 533 GVEFVQKGY 541 (1150)
Q Consensus 533 ~v~F~q~Gy 541 (1150)
-+.+.++-+
T Consensus 1425 ~vt~~nk~~ 1433 (1531)
T COG4932 1425 KVTKTNKLF 1433 (1531)
T ss_pred EEEeecccc
Confidence 455554443
No 4
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=4.6e-26 Score=276.26 Aligned_cols=377 Identities=16% Similarity=0.266 Sum_probs=271.9
Q ss_pred cccCceEeeCCeeeeEEEE-EEECCCCcccC-CceEEEEEcCCCcCCcceeeEEEeCceEEEEE-EeecCCccccCCCCC
Q 001120 20 VSADSIHGCGGFVEGSFVI-KVNGPEGWSWN-PDKVAVTVDDTGCNGNEDINFRFTGFTLLGRV-VGAIGGESCLDKGGG 96 (1150)
Q Consensus 20 ~~~~~~~g~ggfv~G~Y~L-~~~~P~Gw~f~-p~~v~v~Vd~~~~s~~~dinf~~~g~~IsG~V-~~~~G~~s~~~~g~p 96 (1150)
+-+++.+.++++--|+|.| +.++|.||.++ -...+++|+.. +..+-....+-...|.| +.+. +.++++-
T Consensus 1006 T~~dGkl~~~nL~~~dY~LiETkAPtGY~l~~~dgkeiTI~~s----g~Ei~vtkeN~~~~g~V~L~K~----D~at~~~ 1077 (1531)
T COG4932 1006 TDEDGKLTFDNLQYGDYKLIETKAPTGYTLDYKDGKEITISAS----GKEIFVTKENEAKKGSVQLTKK----DSATGAT 1077 (1531)
T ss_pred ecccceeeecccccceeEEEEccCCcceeeccCcccEEEEecC----CceeEEeecccccccceeEEEe----ccccccc
Confidence 3456777888887899999 89999999988 66677777763 23333333444445655 2221 2247899
Q ss_pred CcceEEEEEeCCCceEEE-EEeCCCceEEEccccCccEEEEEEc--CCceEEeeccEEEEEcccceeeeeeeeecCcEEE
Q 001120 97 PSNVNVELLSHSGDLISS-VITSSEGSYLFKNIIPGKYKLRASH--PNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIR 173 (1150)
Q Consensus 97 laGv~V~L~~~~g~~i~~-ttTd~~G~f~f~~L~pG~Y~l~a~~--~g~~~~~~~~~~V~v~~~~~~~~~~l~i~g~~i~ 173 (1150)
|+||.++|.+.+|..+++ .+||++|...+.+|.||+|++.+.+ .||.+. .....|++........ .+........
T Consensus 1078 LaGA~FeLQdk~G~~l~enL~TD~~G~v~itdLaPGDYqfVEtkAPtGY~Ld-atPV~FtI~eeq~e~~-~vtKeN~~~~ 1155 (1531)
T COG4932 1078 LAGAEFELQDKDGNTLQENLTTDEDGKVEITDLAPGDYQFVETKAPTGYILD-ATPVNFTISEEQDEAA-KVTKENTLKP 1155 (1531)
T ss_pred ccCceEEEeeccCcchhhhccccccCcEEeccccCCceeeEEecCCceeEec-CccceeEeeccCCcee-EEeecccccc
Confidence 999999999999976766 7899999999999999999999865 489887 3336777763332211 1112223334
Q ss_pred EEEE-----e-CCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECccCCeeEEEEEEEecCCeE
Q 001120 174 GLVV-----A-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTV 247 (1150)
Q Consensus 174 G~V~-----~-~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v~~~~~~~~~~ 247 (1150)
|.|. + .+++|+||.|.|.+.+++.+ ....+||++|+..+.+|.||+|++++..++.++.
T Consensus 1156 GsvqLtK~Ds~t~a~LaGA~Fel~d~dG~~V---------------qegLtTD~nG~i~VtdL~PGdYqFVETkAP~GY~ 1220 (1531)
T COG4932 1156 GSVQLTKVDSATKATLAGAEFELQDEDGTLV---------------QEGLTTDENGKINVTDLAPGDYQFVETKAPTGYI 1220 (1531)
T ss_pred cceEEEEecccccccccCcEEEEEcCCCcEe---------------eccceecCCCcEEecccCCcceeeeeecCCccee
Confidence 4443 2 58999999999999876542 3557999999999999999999999987777777
Q ss_pred EEecCceEEEEEeccceeeeccEEEeceEEEEEEEe-----CCCccccCeEEEE---cceee---eEeCCCceEEECccC
Q 001120 248 FDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVD-----ENDMGVEGVKILV---DGHER---SITDRDGYYKLDQVT 316 (1150)
Q Consensus 248 ~~~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V~d-----~~G~plaGA~V~l---~G~~~---~~TD~dG~f~l~~L~ 316 (1150)
++..|.. |++..++.... .+....-.+.|.|+. ..+..|+||.+.+ +|..+ .+||+.|.....+|+
T Consensus 1221 LdatP~~--FtI~~~q~ev~-~V~~en~~~pgsv~L~k~d~~~~~~l~~a~fkl~~~eg~~vqe~L~td~~Gei~v~dlk 1297 (1531)
T COG4932 1221 LDATPTP--FTIEFNQEEVV-KVVKENTAIPGSVVLTKKDSDTGAALSGAEFKLLDAEGTTVQEGLTTDETGEIVVADLK 1297 (1531)
T ss_pred eccccce--eEEecccccee-EEeeccccCCCCceeeccCCCcccccCCCceeeecCCCcEeccCceecCCCcEEecccC
Confidence 7777765 55544432221 122233345666653 2578899999999 55554 599999999999999
Q ss_pred CccEEE-EEEec-ccccccee-eEEEcCCcceeeeEEEeeeEEEEEEEEcC-------CcccEEEEEEcCCCcceeeeee
Q 001120 317 SNRYTI-EAVKV-HYKFNKLK-EYMVLPNMASIADIKAISYDICGVVRTVG-------SGNKVKVALTHGPDKVKPQVKQ 386 (1150)
Q Consensus 317 pG~Ytv-~~~~~-~y~~~~~~-~v~v~p~~~~i~dI~~~~~~V~G~V~~~~-------~~~~a~Vtl~~g~~~~~~~~~~ 386 (1150)
||+|++ +..+| ||..+..+ .+.+.-++.....+...+-.+.|.|.... ...+|.+.|.+..++......+
T Consensus 1298 pGdyqfVETkAp~Gy~L~a~pv~ftI~~~q~e~~kV~~~n~~~~gsv~l~k~d~~~~~~LegA~F~l~de~g~ilke~l~ 1377 (1531)
T COG4932 1298 PGDYQFVETKAPEGYILDATPVNFTIEFNQEEAVKVTKENDAKTGSVVLTKLDSSSGVTLEGAEFELLDEEGNILKEGLV 1377 (1531)
T ss_pred CCcccceEccCCcceEEeecceeEEEEecccccEEEEEeeccccccEEEEEeecccCccccCcEEEEEcccCceehhcce
Confidence 999996 44444 57776652 22333334344455556667778876432 1257788888877877677889
Q ss_pred eCCCeEEEEE-EcCeeEEEEEEeecCCCCCceeeeCceEEEEE
Q 001120 387 TDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVV 428 (1150)
Q Consensus 387 Td~dG~f~f~-L~pG~Y~l~~~~~~~~~~~G~~~~p~~~~V~V 428 (1150)
||++|...+. |+||.|++.++++ |.||.+....+.++|
T Consensus 1378 t~~nG~l~v~dLaPGdYqfvETkA----PtgY~Ld~tpv~FTI 1416 (1531)
T COG4932 1378 TDENGQLLVDDLAPGDYQFVETKA----PTGYELDATPVDFTI 1416 (1531)
T ss_pred eCCCCcEEEeecCCCceeeEEccC----CcceeccCCceEEEE
Confidence 9999999999 9999999999984 689999988888887
No 5
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.89 E-value=6.1e-09 Score=95.11 Aligned_cols=76 Identities=21% Similarity=0.394 Sum_probs=55.0
Q ss_pred EEEEEEEeCCCccccCeEEEEc---cee--eeEeCCCceEEECccCCccEEEEEEeccccccceeeEEEcCCcceeeeEE
Q 001120 276 SVGGRVVDENDMGVEGVKILVD---GHE--RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIK 350 (1150)
Q Consensus 276 sV~G~V~d~~G~plaGA~V~l~---G~~--~~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~p~~~~i~dI~ 350 (1150)
+|+|+|+|++|+||+||.|.+. +.. .+.||++|+|.|.+|+||+|+|++.+++|.......+.+.++.....+|.
T Consensus 1 tI~G~V~d~~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~~i~ 80 (82)
T PF13620_consen 1 TISGTVTDATGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQTQENVTVTAGQTTTVDIT 80 (82)
T ss_dssp -EEEEEEETTSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EEEEEEEESSSSEEE--EE
T ss_pred CEEEEEEcCCCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcceEEEEEEEEeCCCEEEEEEE
Confidence 5899999999999999999992 222 26999999999999999999999999998766543577777654444554
Q ss_pred E
Q 001120 351 A 351 (1150)
Q Consensus 351 ~ 351 (1150)
+
T Consensus 81 L 81 (82)
T PF13620_consen 81 L 81 (82)
T ss_dssp E
T ss_pred E
Confidence 3
No 6
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.82 E-value=1.1e-08 Score=93.41 Aligned_cols=74 Identities=27% Similarity=0.465 Sum_probs=55.5
Q ss_pred eEEEEEEeecCCccccCCCCCCcceEEEEEeCCCceEEEEEeCCCceEEEccccCccEEEEEEcCCceEEeeccEEEEEc
Q 001120 76 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 155 (1150)
Q Consensus 76 ~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~g~~~~~~~~~~V~v~ 155 (1150)
+|+|+|.+. +|.|++||+|+|.+.++....+++||++|+|+|.+|+||.|.|.++++||.... ...+.+.
T Consensus 1 tI~G~V~d~--------~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~--~~~v~v~ 70 (82)
T PF13620_consen 1 TISGTVTDA--------TGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQT--QENVTVT 70 (82)
T ss_dssp -EEEEEEET--------TSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EE--EEEEEES
T ss_pred CEEEEEEcC--------CCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcceEE--EEEEEEe
Confidence 489999986 469999999999987777788999999999999999999999999999998651 1257776
Q ss_pred ccce
Q 001120 156 FENG 159 (1150)
Q Consensus 156 ~~~~ 159 (1150)
.+..
T Consensus 71 ~~~~ 74 (82)
T PF13620_consen 71 AGQT 74 (82)
T ss_dssp SSSE
T ss_pred CCCE
Confidence 5543
No 7
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.20 E-value=7.1e-06 Score=76.00 Aligned_cols=58 Identities=19% Similarity=0.530 Sum_probs=50.3
Q ss_pred EEEEEEEeCC-CccccCeEEEE-cceeeeEeCCCceEEECccCCccEEEEEEeccccccce
Q 001120 276 SVGGRVVDEN-DMGVEGVKILV-DGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKL 334 (1150)
Q Consensus 276 sV~G~V~d~~-G~plaGA~V~l-~G~~~~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~ 334 (1150)
+|+|+|.|.. ++||++|.|.+ +....+.||++|+|.|. +++|+|+|.+++.+|.....
T Consensus 1 ti~G~V~d~~t~~pl~~a~V~~~~~~~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~~~~~ 60 (88)
T PF13715_consen 1 TISGKVVDSDTGEPLPGATVYLKNTKKGTVTDENGRFSIK-LPEGDYTLKISYIGYETKTI 60 (88)
T ss_pred CEEEEEEECCCCCCccCeEEEEeCCcceEEECCCeEEEEE-EcCCCeEEEEEEeCEEEEEE
Confidence 3789999995 99999999999 44456899999999997 99999999999999765443
No 8
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=98.13 E-value=9.7e-06 Score=71.78 Aligned_cols=61 Identities=25% Similarity=0.480 Sum_probs=48.9
Q ss_pred CcceEEEEEeCCCceEEE--EEeCCCceEEEccccCccEEEEEEc--CCceEEeeccEEEEEcccc
Q 001120 97 PSNVNVELLSHSGDLISS--VITSSEGSYLFKNIIPGKYKLRASH--PNLSVEVRGSTEVELGFEN 158 (1150)
Q Consensus 97 laGv~V~L~~~~g~~i~~--ttTd~~G~f~f~~L~pG~Y~l~a~~--~g~~~~~~~~~~V~v~~~~ 158 (1150)
|+||+|+|++.++..... .+||++|.|.|.+|+||+|.|++.. +||... .....+.+..++
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~-~~~~~~~i~~~~ 65 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLD-DTPYEFTITEDG 65 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEE-ECEEEEEECTTS
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCEEC-CCceEEEEecCC
Confidence 689999999998866654 8999999999999999999999865 588776 334566665543
No 9
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.08 E-value=2.8e-05 Score=71.97 Aligned_cols=58 Identities=24% Similarity=0.372 Sum_probs=50.5
Q ss_pred eEEEEEEeecCCccccCCCCCCcceEEEEEeCCCceEEEEEeCCCceEEEccccCccEEEEEEcCCceEE
Q 001120 76 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE 145 (1150)
Q Consensus 76 ~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~g~~~~ 145 (1150)
+|+|+|.++. ++.|++||+|.+.+.+ ..+.||++|+|+|. +++|.|.|.+++.||...
T Consensus 1 ti~G~V~d~~-------t~~pl~~a~V~~~~~~----~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~~~ 58 (88)
T PF13715_consen 1 TISGKVVDSD-------TGEPLPGATVYLKNTK----KGTVTDENGRFSIK-LPEGDYTLKISYIGYETK 58 (88)
T ss_pred CEEEEEEECC-------CCCCccCeEEEEeCCc----ceEEECCCeEEEEE-EcCCCeEEEEEEeCEEEE
Confidence 4799999862 4799999999998543 46889999999999 999999999999999865
No 10
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.96 E-value=2.4e-05 Score=91.63 Aligned_cols=75 Identities=21% Similarity=0.182 Sum_probs=61.5
Q ss_pred eEEEEEEEeC-CCccccCeEEEEccee-eeEeCCCceEEECccCCccEEEEEEeccccccceeeEEEcCCcceeeeEEE
Q 001120 275 FSVGGRVVDE-NDMGVEGVKILVDGHE-RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKA 351 (1150)
Q Consensus 275 ~sV~G~V~d~-~G~plaGA~V~l~G~~-~~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~p~~~~i~dI~~ 351 (1150)
..|.|+|+|. +|+||+||+|.|.|.. .++||.+|.|.+ .|+||+|+|++++.+|..... .+.+.++.....+|.+
T Consensus 297 ~gI~G~V~D~~~g~pl~~AtV~V~g~~~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~~~~~-~v~V~~~~~~~~~~~L 373 (375)
T cd03863 297 RGVRGFVLDATDGRGILNATISVADINHPVTTYKDGDYWR-LLVPGTYKVTASARGYDPVTK-TVEVDSKGAVQVNFTL 373 (375)
T ss_pred CeEEEEEEeCCCCCCCCCeEEEEecCcCceEECCCccEEE-ccCCeeEEEEEEEcCcccEEE-EEEEcCCCcEEEEEEe
Confidence 4699999997 7999999999997654 479999999999 699999999999999876665 5677666544455544
No 11
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=97.82 E-value=2.7e-05 Score=68.90 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=52.9
Q ss_pred ccceEEEEeCCCcc-cc--ceeecCCceEEEeecCCcceEEeecc--cccccCCCceeEEecCCceEEE
Q 001120 823 IPSVLLSLSGDDGY-RN--NSVSWAGGSFHFDNLFPGNFYLRPLL--KEYAFSPPAQAIELGSGESREV 886 (1150)
Q Consensus 823 l~gvllslsg~~~~-r~--n~~t~~~G~~~f~~L~PG~Y~~~~~~--key~~~p~~~~i~v~~g~~~~v 886 (1150)
|+||.|.|...++- .. +..||++|.+.|.+|+||+|+|++.. ..|.+.+....+++.+++...|
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~~~~~~~~i~~~~~~~v 69 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLDDTPYEFTITEDGDVTV 69 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEEECEEEEEECTTSCEEE
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCEECCCceEEEEecCCEEEE
Confidence 67888888776542 22 47899999999999999999999874 6899999999999999988665
No 12
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.79 E-value=6.3e-05 Score=87.85 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=59.7
Q ss_pred eEEEEEEEeCCCccccCeEEEEcceeeeEeCCCceEEECccCCccEEEEEEeccccccceeeEEEcCCcceeeeEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIK 350 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l~G~~~~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~p~~~~i~dI~ 350 (1150)
..|+|+|.|.+|+||+||.|.+.|....+||.+|.|.+. |+||+|+|++++.+|..... .+.+..+.....++.
T Consensus 287 ~gI~G~V~d~~g~pi~~A~V~v~g~~~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~~~~~-~V~v~~~~~~~~~f~ 360 (363)
T cd06245 287 KGVHGVVTDKAGKPISGATIVLNGGHRVYTKEGGYFHVL-LAPGQHNINVIAEGYQQEHL-PVVVSHDEASSVKIV 360 (363)
T ss_pred cEEEEEEEcCCCCCccceEEEEeCCCceEeCCCcEEEEe-cCCceEEEEEEEeCceeEEE-EEEEcCCCeEEEEEE
Confidence 469999999999999999999966545789999999995 99999999999999876554 466665543333443
No 13
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=97.78 E-value=9.2e-05 Score=66.15 Aligned_cols=57 Identities=32% Similarity=0.518 Sum_probs=51.5
Q ss_pred eEEEEEEeecCCccccCCCCCCcceEEEEEeCCCceEEEEEeCCCceEEEccccCccEEEEEEcCCc
Q 001120 76 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNL 142 (1150)
Q Consensus 76 ~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~g~ 142 (1150)
.|+|+|.. +|+|++|+-|+|++.+|+...+..|+++|.|+|- -.||+|+|++.+++-
T Consensus 9 VItG~V~~---------~G~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFf-aapG~WtvRal~~~g 65 (85)
T PF07210_consen 9 VITGRVTR---------DGEPVGGAYVRLLDSSGEFTAEVVTSATGDFRFF-AAPGSWTVRALSRGG 65 (85)
T ss_pred EEEEEEec---------CCcCCCCeEEEEEcCCCCeEEEEEecCCccEEEE-eCCCceEEEEEccCC
Confidence 48999994 2699999999999999999999999999999999 899999999977654
No 14
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.77 E-value=6.5e-05 Score=88.24 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=59.6
Q ss_pred EEEEEEEeCCCccccCeEEEEcceee-eEeCCCceEEECccCCccEEEEEEeccccccceeeEEEcCCcceeeeEE
Q 001120 276 SVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIK 350 (1150)
Q Consensus 276 sV~G~V~d~~G~plaGA~V~l~G~~~-~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~p~~~~i~dI~ 350 (1150)
.|+|+|.|..|.||+||+|.+.|... .+||.+|.|.+ .|+||+|+|++++.+|..... .+.+..+.....|+.
T Consensus 327 gI~G~V~D~~g~pI~~AtV~V~g~~~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~~~~~-~V~V~~~~~~~vdf~ 400 (402)
T cd03865 327 GVKGFVKDLQGNPIANATISVEGIDHDITSAKDGDYWR-LLAPGNYKLTASAPGYLAVVK-KVAVPYSPAVRVDFE 400 (402)
T ss_pred ceEEEEECCCCCcCCCeEEEEEcCccccEECCCeeEEE-CCCCEEEEEEEEecCcccEEE-EEEEcCCCcEEEeEE
Confidence 49999999989999999999966543 68999999999 899999999999999876643 566766554444444
No 15
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.74 E-value=8e-05 Score=87.67 Aligned_cols=74 Identities=24% Similarity=0.369 Sum_probs=59.5
Q ss_pred eEEEEEEEeCCCccccCeEEEEcceee-eEeCCCceEEECccCCccEEEEEEeccccccceeeEEEcCCcceeeeEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIK 350 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l~G~~~-~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~p~~~~i~dI~ 350 (1150)
..|+|+|.|.+|.||+||.|.+.|... ++||.+|.| +..|+||+|+|++++.+|..... .+.+..+.....++.
T Consensus 316 ~gI~G~V~D~~g~pi~~A~V~v~g~~~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~~~t~-~v~V~~~~~~~~df~ 390 (392)
T cd03864 316 QGIKGMVTDENNNGIANAVISVSGISHDVTSGTLGDY-FRLLLPGTYTVTASAPGYQPSTV-TVTVGPAEATLVNFQ 390 (392)
T ss_pred CeEEEEEECCCCCccCCeEEEEECCccceEECCCCcE-EecCCCeeEEEEEEEcCceeEEE-EEEEcCCCcEEEeeE
Confidence 369999999999999999999977544 689999999 88999999999999999876654 466665543333443
No 16
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=97.58 E-value=0.00016 Score=85.28 Aligned_cols=68 Identities=26% Similarity=0.313 Sum_probs=55.8
Q ss_pred eEEEEEEEeCCCccccCeEEEEcce-eeeEeCCCceEEECccCCccEEEEEEeccccccceeeEEEcCCc
Q 001120 275 FSVGGRVVDENDMGVEGVKILVDGH-ERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNM 343 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l~G~-~~~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~p~~ 343 (1150)
..|.|+|.|.+|+|++||.|.+.+. ..++||++|.|.. +|+||+|+|++++.+|.......+.+..+.
T Consensus 296 ~~i~G~V~d~~g~pv~~A~V~v~~~~~~~~td~~G~y~~-~l~~G~Y~l~vs~~Gf~~~~~~~v~v~~g~ 364 (372)
T cd03868 296 IGVKGFVRDASGNPIEDATIMVAGIDHNVTTAKFGDYWR-LLLPGTYTITAVAPGYEPSTVTDVVVKEGE 364 (372)
T ss_pred CceEEEEEcCCCCcCCCcEEEEEecccceEeCCCceEEe-cCCCEEEEEEEEecCCCceEEeeEEEcCCC
Confidence 4689999999999999999999553 3479999999985 899999999999999766555344555554
No 17
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.53 E-value=0.0003 Score=82.53 Aligned_cols=85 Identities=19% Similarity=0.322 Sum_probs=73.3
Q ss_pred eEEeeeeeEEEEEEecCCCCCcccceEEEEeCCCccccceeecCCceEEEeecCCcceEEeecccccccCCCceeEEecC
Q 001120 801 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS 880 (1150)
Q Consensus 801 f~~~kl~~i~v~v~~~~~~~~pl~gvllslsg~~~~r~n~~t~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~ 880 (1150)
|-.+...+|...|+|+ .+|+||++|.++|.|. .....||.+|.|.+ .|+||+|.|+...-.|+ +..+.|.|.+
T Consensus 291 ~~~~~~~gI~G~V~D~-~~g~pl~~AtV~V~g~---~~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~--~~~~~v~V~~ 363 (375)
T cd03863 291 FMKQVHRGVRGFVLDA-TDGRGILNATISVADI---NHPVTTYKDGDYWR-LLVPGTYKVTASARGYD--PVTKTVEVDS 363 (375)
T ss_pred HHHHhcCeEEEEEEeC-CCCCCCCCeEEEEecC---cCceEECCCccEEE-ccCCeeEEEEEEEcCcc--cEEEEEEEcC
Confidence 4455667999999997 4599999999999986 36688999999998 69999999999999998 5677899999
Q ss_pred CceEEEEEEEEe
Q 001120 881 GESREVIFQATR 892 (1150)
Q Consensus 881 g~~~~v~~~~~r 892 (1150)
|++..+.|...|
T Consensus 364 ~~~~~~~~~L~~ 375 (375)
T cd03863 364 KGAVQVNFTLSR 375 (375)
T ss_pred CCcEEEEEEecC
Confidence 999999998765
No 18
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=97.50 E-value=0.00042 Score=62.02 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=48.6
Q ss_pred EEEEEEEeCCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECccCCeeEEEEEEEec
Q 001120 171 EIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKG 243 (1150)
Q Consensus 171 ~i~G~V~~~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v~~~~~~ 243 (1150)
.|+|+|+.+|+|++||.|+|.+.+ |.......|+++|.|+|- -.||+++|++..++
T Consensus 9 VItG~V~~~G~Pv~gAyVRLLD~s----------------gEFtaEvvts~~G~FRFf-aapG~WtvRal~~~ 64 (85)
T PF07210_consen 9 VITGRVTRDGEPVGGAYVRLLDSS----------------GEFTAEVVTSATGDFRFF-AAPGSWTVRALSRG 64 (85)
T ss_pred EEEEEEecCCcCCCCeEEEEEcCC----------------CCeEEEEEecCCccEEEE-eCCCceEEEEEccC
Confidence 479999999999999999999874 335689999999999996 79999999997554
No 19
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=97.42 E-value=0.00049 Score=68.13 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=52.2
Q ss_pred eEEEEEEEeCCCccccCeEEEE----cceee-------eEeCCCceEEECccCCccEEEEEEeccccccceeeEEEcCC
Q 001120 275 FSVGGRVVDENDMGVEGVKILV----DGHER-------SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPN 342 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l----~G~~~-------~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~p~ 342 (1150)
..|+|...|+.|+|++|+.|.| +-..+ ..||++|+|.| ++.||.|.|.+...++.+.-...+.+.+.
T Consensus 3 V~ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~-~~epG~Y~V~l~~~g~~~~~vG~I~V~~d 80 (134)
T PF08400_consen 3 VKISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSF-DVEPGVYRVTLKVEGRPPVYVGDITVYED 80 (134)
T ss_pred EEEEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEE-EecCCeEEEEEEECCCCceeEEEEEEecC
Confidence 4689999999999999999999 22211 38999999999 89999999999988864443333455443
No 20
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=97.42 E-value=0.00031 Score=70.51 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=51.6
Q ss_pred eEEEEEEeecCCccccCCCCCCcceEEEEEeCCC---ceEEEEEeCCCceEEE---c-cccCccEEEEEEcCCceE
Q 001120 76 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYLF---K-NIIPGKYKLRASHPNLSV 144 (1150)
Q Consensus 76 ~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g---~~i~~ttTd~~G~f~f---~-~L~pG~Y~l~a~~~g~~~ 144 (1150)
.|+++|++.. +|.|++||.|+|...++ +.+.+++||+||+|.+ . .+.||.|+|+....+|--
T Consensus 28 ~Is~HVLDt~-------~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf~ 96 (137)
T PRK15036 28 ILSVHILNQQ-------TGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFK 96 (137)
T ss_pred CeEEEEEeCC-------CCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhhh
Confidence 4899999862 58999999999987653 5578999999999986 2 388999999998888753
No 21
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=97.42 E-value=0.00038 Score=81.85 Aligned_cols=65 Identities=22% Similarity=0.301 Sum_probs=53.2
Q ss_pred eEEEEEEEeCCCccccCeEEEEccee---eeEeCCCceEEECccCCccEEEEEEeccccccceeeEEEcC
Q 001120 275 FSVGGRVVDENDMGVEGVKILVDGHE---RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLP 341 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l~G~~---~~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~p 341 (1150)
..|.|+|+|.+|+||+||.|.+.|.. ..+||++|.|.+ .|+||+|+|++++++|..... .+.+..
T Consensus 295 ~gI~G~V~D~~g~pi~~A~V~v~g~~~~~~~~T~~~G~y~~-~l~pG~Y~v~vsa~Gy~~~~~-~v~v~~ 362 (376)
T cd03866 295 LGVKGQVFDSNGNPIPNAIVEVKGRKHICPYRTNVNGEYFL-LLLPGKYMINVTAPGFKTVIT-NVIIPY 362 (376)
T ss_pred CceEEEEECCCCCccCCeEEEEEcCCceeEEEECCCceEEE-ecCCeeEEEEEEeCCcceEEE-EEEeCC
Confidence 35999999999999999999996653 358999999987 599999999999999865543 344443
No 22
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=97.40 E-value=0.00043 Score=81.78 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=51.5
Q ss_pred eEEEEEEEeCCCccccCeEEEEcceee-eEeCCCceEEECccCCccEEEEEEeccccccce
Q 001120 275 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKL 334 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l~G~~~-~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~ 334 (1150)
.+|+|+|.|.+|+|+++|+|.+.|... +.||.+|.|.+ .|++|+|+|+++..+|.....
T Consensus 298 ~~i~G~V~d~~g~pl~~A~V~i~~~~~~~~Td~~G~f~~-~l~~G~y~l~vs~~Gy~~~~~ 357 (374)
T cd03858 298 RGIKGFVRDANGNPIANATISVEGINHDVTTAEDGDYWR-LLLPGTYNVTASAPGYEPQTK 357 (374)
T ss_pred CceEEEEECCCCCccCCeEEEEecceeeeEECCCceEEE-ecCCEeEEEEEEEcCcceEEE
Confidence 379999999999999999999976554 78999999998 589999999999999765544
No 23
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=97.35 E-value=0.00087 Score=66.41 Aligned_cols=61 Identities=20% Similarity=0.359 Sum_probs=50.8
Q ss_pred eEEEEEEeecCCccccCCCCCCcceEEEEEeCCC------ceEEEEEeCCCceEEEccccCccEEEEEEcCCceEE
Q 001120 76 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG------DLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE 145 (1150)
Q Consensus 76 ~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g------~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~g~~~~ 145 (1150)
.|+|...+. .|+|++|++++|..... ....+..|+++|.|+|+ +.||.|.|.....||...
T Consensus 4 ~ISGvL~dg--------~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~-~epG~Y~V~l~~~g~~~~ 70 (134)
T PF08400_consen 4 KISGVLKDG--------AGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFD-VEPGVYRVTLKVEGRPPV 70 (134)
T ss_pred EEEEEEeCC--------CCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEE-ecCCeEEEEEEECCCCce
Confidence 588988763 57999999999986543 33567789999999999 999999999999998654
No 24
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=97.29 E-value=0.00062 Score=80.74 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=54.3
Q ss_pred eEEEEEEEeCCCccccCeEEEEcceee-eEeCCCceEEECccCCccEEEEEEeccccccceeeEEEcC
Q 001120 275 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLP 341 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l~G~~~-~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~p 341 (1150)
..|.|+|.|.+|+||+||.|.+.|... ++||++|.|.. .|+||+|+|++++.+|..... .+.+..
T Consensus 318 ~~i~G~V~D~~g~pi~~A~V~v~g~~~~~~Td~~G~y~~-~l~~G~y~l~vs~~Gy~~~~~-~v~v~~ 383 (395)
T cd03867 318 RGIKGFVKDKDGNPIKGARISVRGIRHDITTAEDGDYWR-LLPPGIHIVSAQAPGYTKVMK-RVTLPA 383 (395)
T ss_pred ceeEEEEEcCCCCccCCeEEEEeccccceEECCCceEEE-ecCCCcEEEEEEecCeeeEEE-EEEeCC
Confidence 369999999999999999999977544 68999999974 899999999999999865543 455543
No 25
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.15 E-value=0.0012 Score=77.93 Aligned_cols=82 Identities=23% Similarity=0.384 Sum_probs=69.5
Q ss_pred eEEeeeeeEEEEEEecCCCCCcccceEEEEeCCCccccceeecCCceEEEeecCCcceEEeecccccccCCCceeEEecC
Q 001120 801 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS 880 (1150)
Q Consensus 801 f~~~kl~~i~v~v~~~~~~~~pl~gvllslsg~~~~r~n~~t~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~ 880 (1150)
|-.+...+|..+|.|.+ |+|+++|.++|.|.+ ....||.+|.| +..|.||+|.|+.....|. +..+.|+|.+
T Consensus 310 ~~~~~~~gI~G~V~D~~--g~pi~~A~V~v~g~~---~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~--~~t~~v~V~~ 381 (392)
T cd03864 310 YIEQVHQGIKGMVTDEN--NNGIANAVISVSGIS---HDVTSGTLGDY-FRLLLPGTYTVTASAPGYQ--PSTVTVTVGP 381 (392)
T ss_pred HHHHhcCeEEEEEECCC--CCccCCeEEEEECCc---cceEECCCCcE-EecCCCeeEEEEEEEcCce--eEEEEEEEcC
Confidence 33445568999999874 899999999999873 56789999999 9999999999999999998 5677799999
Q ss_pred CceEEEEEEE
Q 001120 881 GESREVIFQA 890 (1150)
Q Consensus 881 g~~~~v~~~~ 890 (1150)
+++..+.|+.
T Consensus 382 ~~~~~~df~L 391 (392)
T cd03864 382 AEATLVNFQL 391 (392)
T ss_pred CCcEEEeeEe
Confidence 9988887764
No 26
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=97.06 E-value=0.0011 Score=78.08 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=51.7
Q ss_pred EEEEEEEeCCCccccCeEEEEccee-eeEeCCCce-EEECccCCccEEEEEEeccccccceeeEEEcC
Q 001120 276 SVGGRVVDENDMGVEGVKILVDGHE-RSITDRDGY-YKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLP 341 (1150)
Q Consensus 276 sV~G~V~d~~G~plaGA~V~l~G~~-~~~TD~dG~-f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~p 341 (1150)
-|.|.|+|.+|.||++|+|.+.|.. ..+|.++|. |+| |.||+|+|++++++|...+. .+.+..
T Consensus 330 GikG~V~d~~g~~i~~a~i~v~g~~~~v~t~~~GdywRl--l~pG~y~v~~~a~gy~~~~~-~~~v~~ 394 (405)
T cd03869 330 GIKGVVRDKTGKGIPNAIISVEGINHDIRTASDGDYWRL--LNPGEYRVTAHAEGYTSSTK-NCEVGY 394 (405)
T ss_pred CceEEEECCCCCcCCCcEEEEecCccceeeCCCCceEEe--cCCceEEEEEEecCCCcccE-EEEEcC
Confidence 4899999999999999999997743 357888896 577 99999999999999876655 455554
No 27
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.05 E-value=0.0021 Score=75.25 Aligned_cols=81 Identities=20% Similarity=0.334 Sum_probs=69.1
Q ss_pred eEEeeeeeEEEEEEecCCCCCcccceEEEEeCCCccccceeecCCceEEEeecCCcceEEeecccccccCCCceeEEecC
Q 001120 801 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS 880 (1150)
Q Consensus 801 f~~~kl~~i~v~v~~~~~~~~pl~gvllslsg~~~~r~n~~t~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~ 880 (1150)
|-.+..-+|..+|.|.. |+||++|.++|.|. . ...||.+|.|.+. |.||+|.|+.....|. +..+.|.|.+
T Consensus 281 ~~~~~~~gI~G~V~d~~--g~pi~~A~V~v~g~---~-~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~--~~~~~V~v~~ 351 (363)
T cd06245 281 MIVEAHKGVHGVVTDKA--GKPISGATIVLNGG---H-RVYTKEGGYFHVL-LAPGQHNINVIAEGYQ--QEHLPVVVSH 351 (363)
T ss_pred HHHHcCcEEEEEEEcCC--CCCccceEEEEeCC---C-ceEeCCCcEEEEe-cCCceEEEEEEEeCce--eEEEEEEEcC
Confidence 33445578899999864 89999999999995 2 6789999999997 9999999999999998 5677899999
Q ss_pred CceEEEEEEE
Q 001120 881 GESREVIFQA 890 (1150)
Q Consensus 881 g~~~~v~~~~ 890 (1150)
++...+.|+.
T Consensus 352 ~~~~~~~f~L 361 (363)
T cd06245 352 DEASSVKIVL 361 (363)
T ss_pred CCeEEEEEEe
Confidence 9998888865
No 28
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.01 E-value=0.002 Score=75.94 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=69.6
Q ss_pred eEEeeeeeEEEEEEecCCCCCcccceEEEEeCCCccccceeecCCceEEEeecCCcceEEeecccccccCCCceeEEecC
Q 001120 801 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS 880 (1150)
Q Consensus 801 f~~~kl~~i~v~v~~~~~~~~pl~gvllslsg~~~~r~n~~t~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~ 880 (1150)
|-++..-+|..+|.|.. |+|+++|.++|.|.+ .+..|+.+|.|.+ .|.||+|.|+.....|. +..+.|.|.+
T Consensus 320 ~~~q~~~gI~G~V~D~~--g~pI~~AtV~V~g~~---~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~--~~~~~V~V~~ 391 (402)
T cd03865 320 YIEQVHRGVKGFVKDLQ--GNPIANATISVEGID---HDITSAKDGDYWR-LLAPGNYKLTASAPGYL--AVVKKVAVPY 391 (402)
T ss_pred HHHHhccceEEEEECCC--CCcCCCeEEEEEcCc---cccEECCCeeEEE-CCCCEEEEEEEEecCcc--cEEEEEEEcC
Confidence 33444456999999864 899999999999873 5678999999998 99999999999999998 4568899999
Q ss_pred CceEEEEEEE
Q 001120 881 GESREVIFQA 890 (1150)
Q Consensus 881 g~~~~v~~~~ 890 (1150)
++++.+.|+.
T Consensus 392 ~~~~~vdf~L 401 (402)
T cd03865 392 SPAVRVDFEL 401 (402)
T ss_pred CCcEEEeEEe
Confidence 9999998875
No 29
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=96.93 E-value=0.0027 Score=74.82 Aligned_cols=68 Identities=25% Similarity=0.468 Sum_probs=53.1
Q ss_pred ceEEEEEEeecCCccccCCCCCCcceEEEEEeCCCceEEEEEeCCCceEEEccccCccEEEEEEcCCceEEeeccEEEEE
Q 001120 75 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVEL 154 (1150)
Q Consensus 75 ~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~g~~~~~~~~~~V~v 154 (1150)
..|.|+|.+. +|+|++||+|++...+ .....+||.+|.|.+. |+||+|.|.++++||... ...+.+
T Consensus 295 ~gI~G~V~D~--------~g~pi~~A~V~v~g~~--~~~~~~T~~~G~y~~~-l~pG~Y~v~vsa~Gy~~~---~~~v~v 360 (376)
T cd03866 295 LGVKGQVFDS--------NGNPIPNAIVEVKGRK--HICPYRTNVNGEYFLL-LLPGKYMINVTAPGFKTV---ITNVII 360 (376)
T ss_pred CceEEEEECC--------CCCccCCeEEEEEcCC--ceeEEEECCCceEEEe-cCCeeEEEEEEeCCcceE---EEEEEe
Confidence 3589999875 3699999999997432 1245689999999775 999999999999999755 245555
Q ss_pred cc
Q 001120 155 GF 156 (1150)
Q Consensus 155 ~~ 156 (1150)
..
T Consensus 361 ~~ 362 (376)
T cd03866 361 PY 362 (376)
T ss_pred CC
Confidence 53
No 30
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=96.90 E-value=0.0016 Score=65.54 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=45.9
Q ss_pred EEEEEEEeC-CCccccCeEEEE---cce-----eeeEeCCCceEEE---C-ccCCccEEEEEEecccc
Q 001120 276 SVGGRVVDE-NDMGVEGVKILV---DGH-----ERSITDRDGYYKL---D-QVTSNRYTIEAVKVHYK 330 (1150)
Q Consensus 276 sV~G~V~d~-~G~plaGA~V~l---~G~-----~~~~TD~dG~f~l---~-~L~pG~Ytv~~~~~~y~ 330 (1150)
.|++.|+|. .|+|++|+.|.| ++. ..++||+||++.. + .+++|.|.|+....+|.
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf 95 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYF 95 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhh
Confidence 599999998 899999999999 221 2269999999986 3 38899999999988873
No 31
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=96.69 E-value=0.0042 Score=72.74 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=60.2
Q ss_pred EEEEEEEeCCCccccCeEEEEccee-eeEeCCCce-EEECccCCccEEEEEEeccccccceeeEEEcCCcceeeeEEEee
Q 001120 276 SVGGRVVDENDMGVEGVKILVDGHE-RSITDRDGY-YKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAIS 353 (1150)
Q Consensus 276 sV~G~V~d~~G~plaGA~V~l~G~~-~~~TD~dG~-f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~p~~~~i~dI~~~~ 353 (1150)
-|.|.|+|.+|+||++|+|.++|-. ..+|-.+|- |+| |.||.|.|+|.+++|...+. .+.|.+..+...|+.+.+
T Consensus 379 GIkG~V~D~~G~~I~NA~IsV~ginHdv~T~~~GDYWRL--L~PG~y~vta~A~Gy~~~tk-~v~V~~~~a~~~df~L~~ 455 (500)
T KOG2649|consen 379 GIKGLVFDDTGNPIANATISVDGINHDVTTAKEGDYWRL--LPPGKYIITASAEGYDPVTK-TVTVPPDRAARVNFTLQR 455 (500)
T ss_pred ccceeEEcCCCCccCceEEEEecCcCceeecCCCceEEe--eCCcceEEEEecCCCcceee-EEEeCCCCccceeEEEec
Confidence 4899999999999999999997644 468888886 566 99999999999999977766 677777444455666553
No 32
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=96.59 E-value=0.0046 Score=60.00 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=48.3
Q ss_pred EEEEEEeecCCccccCCCCCCcceEEEEEeCCC---ceEEEEEeCCCceEE-----EccccCccEEEEEEcCCce
Q 001120 77 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYL-----FKNIIPGKYKLRASHPNLS 143 (1150)
Q Consensus 77 IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g---~~i~~ttTd~~G~f~-----f~~L~pG~Y~l~a~~~g~~ 143 (1150)
|+=.|++.. .|.|.+||.|+|...++ +.+.+.+||+||++. -..+++|.|+|++....|-
T Consensus 3 lstHVLDt~-------~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Yf 70 (112)
T TIGR02962 3 LSTHVLDTT-------SGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDYF 70 (112)
T ss_pred ceEEEEeCC-------CCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhhh
Confidence 566777752 58999999999987654 457899999999997 4567899999999776664
No 33
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=96.53 E-value=0.0086 Score=56.53 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=30.8
Q ss_pred eEEEEEEeecCCccccCCCCCCc--ceEEEEEeC-----CCceEEEEEeCCCceEEEccccCccEEEEEEcCCc
Q 001120 76 TLLGRVVGAIGGESCLDKGGGPS--NVNVELLSH-----SGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNL 142 (1150)
Q Consensus 76 ~IsG~V~~~~G~~s~~~~g~pla--Gv~V~L~~~-----~g~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~g~ 142 (1150)
+|+|++...+| -..+.+ .+.|-|... +-.....+.||++|+|+|++|+||+|.|.+-.+|.
T Consensus 4 ~VsG~l~l~dg------~~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g~ 71 (95)
T PF14686_consen 4 SVSGRLTLSDG------VTNPPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADGI 71 (95)
T ss_dssp EEEEEEE---S------S--TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE---
T ss_pred EEEEEEEEccC------cccCccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEecc
Confidence 58899875422 012333 455555422 22345678899999999999999999999987553
No 34
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=96.40 E-value=0.022 Score=53.85 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=32.5
Q ss_pred cEEEEEEE-eCC---cce-eceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECccCCeeEEEEEEEe
Q 001120 170 YEIRGLVV-AQG---NPI-LGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYK 242 (1150)
Q Consensus 170 ~~i~G~V~-~~G---~Pl-~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v~~~~~ 242 (1150)
..++|++. .+| .+. ..+.|-|....... ........+.+|++|+|+|+++.||+|.|.+...
T Consensus 3 G~VsG~l~l~dg~~~~~~~~~~~Vgl~~~~d~~-----------q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~ 69 (95)
T PF14686_consen 3 GSVSGRLTLSDGVTNPPAGANAVVGLAPPGDFQ-----------QNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYAD 69 (95)
T ss_dssp BEEEEEEE---SS--TT--S-EEEEEE-------------------SS-EEEEE--TTSEEE---B-SEEEEEEEEE-
T ss_pred CEEEEEEEEccCcccCccceeEEEEeeeccccc-----------cCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEe
Confidence 36789887 455 344 45666666432110 0122567899999999999999999999999753
No 35
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=96.35 E-value=0.0092 Score=61.01 Aligned_cols=53 Identities=32% Similarity=0.533 Sum_probs=43.6
Q ss_pred ceEEEEEEeecCCccccCCCCCCcceEEEEEeCCC----------------ceEEEEEeCCCceEEEccccCccEEE
Q 001120 75 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG----------------DLISSVITSSEGSYLFKNIIPGKYKL 135 (1150)
Q Consensus 75 ~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g----------------~~i~~ttTd~~G~f~f~~L~pG~Y~l 135 (1150)
..|.|+|++. ++.|+++|.|++...+. ..-....||++|+|+|..+.||.|.+
T Consensus 12 l~l~G~V~D~--------~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~ 80 (146)
T cd00421 12 LTLTGTVLDG--------DGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPI 80 (146)
T ss_pred EEEEEEEECC--------CCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCC
Confidence 3578999986 36899999999997653 12346789999999999999999995
No 36
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=96.21 E-value=0.014 Score=69.02 Aligned_cols=81 Identities=21% Similarity=0.378 Sum_probs=66.5
Q ss_pred eEEeeeeeEEEEEEecCCCCCcccceEEEEeCCCccccceeecCCceEEEeecCCcceEEeecccccccCCCcee-EEec
Q 001120 801 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQA-IELG 879 (1150)
Q Consensus 801 f~~~kl~~i~v~v~~~~~~~~pl~gvllslsg~~~~r~n~~t~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~-i~v~ 879 (1150)
|-.+..++|..+|.|.. |+|+++|.+.|.+.+ ....||++|.|. .+|+||+|.|+.....|+ +..+. +.|.
T Consensus 290 ~~~~~~~~i~G~V~d~~--g~pv~~A~V~v~~~~---~~~~td~~G~y~-~~l~~G~Y~l~vs~~Gf~--~~~~~~v~v~ 361 (372)
T cd03868 290 YLEQVHIGVKGFVRDAS--GNPIEDATIMVAGID---HNVTTAKFGDYW-RLLLPGTYTITAVAPGYE--PSTVTDVVVK 361 (372)
T ss_pred HHHHhCCceEEEEEcCC--CCcCCCcEEEEEecc---cceEeCCCceEE-ecCCCEEEEEEEEecCCC--ceEEeeEEEc
Confidence 33456678999999974 899999999999863 457899999997 589999999999998988 43444 5788
Q ss_pred CCceEEEEEE
Q 001120 880 SGESREVIFQ 889 (1150)
Q Consensus 880 ~g~~~~v~~~ 889 (1150)
.|++..+.|+
T Consensus 362 ~g~~~~~~~~ 371 (372)
T cd03868 362 EGEATSVNFT 371 (372)
T ss_pred CCCeEEEeeE
Confidence 9999888775
No 37
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=96.04 E-value=0.021 Score=67.66 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=64.2
Q ss_pred eeeeeEEEEEEecCCCCCcccceEEEEeCCCccccceeecCCceEEEeecCCcceEEeecccccccCCCceeEEecC-Cc
Q 001120 804 QKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS-GE 882 (1150)
Q Consensus 804 ~kl~~i~v~v~~~~~~~~pl~gvllslsg~~~~r~n~~t~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~-g~ 882 (1150)
+...+|..+|.|.. |+|+++|.+.|.|. .....||.+|.|.+. |+||.|.|+.....|. +..+.+.+.. |+
T Consensus 295 ~a~~~i~G~V~d~~--g~pl~~A~V~i~~~---~~~~~Td~~G~f~~~-l~~G~y~l~vs~~Gy~--~~~~~v~v~~~g~ 366 (374)
T cd03858 295 QVHRGIKGFVRDAN--GNPIANATISVEGI---NHDVTTAEDGDYWRL-LLPGTYNVTASAPGYE--PQTKSVVVPNDNS 366 (374)
T ss_pred hcCCceEEEEECCC--CCccCCeEEEEecc---eeeeEECCCceEEEe-cCCEeEEEEEEEcCcc--eEEEEEEEecCCc
Confidence 33448999999974 89999999999875 345789999999985 8999999999988886 5567777777 88
Q ss_pred eEEEEEE
Q 001120 883 SREVIFQ 889 (1150)
Q Consensus 883 ~~~v~~~ 889 (1150)
+..+.|.
T Consensus 367 ~~~~~~~ 373 (374)
T cd03858 367 AVVVDFT 373 (374)
T ss_pred eEEEeeE
Confidence 8888764
No 38
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.81 E-value=0.012 Score=63.84 Aligned_cols=51 Identities=31% Similarity=0.530 Sum_probs=43.5
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----cce------------------eeeEeCCCceEEECccCCccEEEEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGH------------------ERSITDRDGYYKLDQVTSNRYTIEAV 325 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~------------------~~~~TD~dG~f~l~~L~pG~Ytv~~~ 325 (1150)
..|.|+|.|.+|+||++|.|.+ .|. -.+.||++|+|.|.-+.||.|-....
T Consensus 73 i~l~G~VlD~~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~~~ 146 (226)
T COG3485 73 ILLEGRVLDGNGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWRNG 146 (226)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCCCC
Confidence 5789999999999999999998 232 12589999999999999999987655
No 39
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=95.81 E-value=0.026 Score=53.52 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=38.0
Q ss_pred CCCCCcceEEEEEe-CCCceEEEEEeCCCceEEEccccCccEEEEEEc
Q 001120 93 KGGGPSNVNVELLS-HSGDLISSVITSSEGSYLFKNIIPGKYKLRASH 139 (1150)
Q Consensus 93 ~g~plaGv~V~L~~-~~g~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~ 139 (1150)
+++|++||+|+|++ .+|+++.+.+||++|..+|+.. -..+.+.+++
T Consensus 24 tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~-~~~~~viA~~ 70 (97)
T PF11974_consen 24 TGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDST-KKPFLVIARK 70 (97)
T ss_pred CCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCC-CCCEEEEEEE
Confidence 57999999999999 8899999999999999999966 3344444443
No 40
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=95.74 E-value=0.031 Score=66.53 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=64.7
Q ss_pred EeeeeeEEEEEEecCCCCCcccceEEEEeCCCccccceeecCCceEEEeecCCcceEEeecccccccCCCceeEEecC--
Q 001120 803 CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS-- 880 (1150)
Q Consensus 803 ~~kl~~i~v~v~~~~~~~~pl~gvllslsg~~~~r~n~~t~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~-- 880 (1150)
.+..-+|..+|.|+. |+|+++|.+.|.|. .....||++|.|. ..|.||+|.|....-.|+ +..+.|+|..
T Consensus 314 ~~~~~~i~G~V~D~~--g~pi~~A~V~v~g~---~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~--~~~~~v~v~~~~ 385 (395)
T cd03867 314 EMVHRGIKGFVKDKD--GNPIKGARISVRGI---RHDITTAEDGDYW-RLLPPGIHIVSAQAPGYT--KVMKRVTLPARM 385 (395)
T ss_pred HhccceeEEEEEcCC--CCccCCeEEEEecc---ccceEECCCceEE-EecCCCcEEEEEEecCee--eEEEEEEeCCcC
Confidence 344457899999974 89999999999986 3567899999996 789999999998888887 5567788855
Q ss_pred CceEEEEEE
Q 001120 881 GESREVIFQ 889 (1150)
Q Consensus 881 g~~~~v~~~ 889 (1150)
++...|+|+
T Consensus 386 ~~~~~~d~~ 394 (395)
T cd03867 386 KRAGRVDFV 394 (395)
T ss_pred CCceEeeeE
Confidence 677777775
No 41
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=95.59 E-value=0.027 Score=54.75 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=47.6
Q ss_pred EEEEEEeecCCccccCCCCCCcceEEEEEeCCC---ceEEEEEeCCCceEEE-----ccccCccEEEEEEcCCce
Q 001120 77 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYLF-----KNIIPGKYKLRASHPNLS 143 (1150)
Q Consensus 77 IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g---~~i~~ttTd~~G~f~f-----~~L~pG~Y~l~a~~~g~~ 143 (1150)
|+=.|++.. .|.|.+|+.|+|...++ +.+.+..||+||+..- ..+.+|.|+|+..-..|-
T Consensus 3 lstHVLDt~-------~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Yf 70 (112)
T cd05822 3 LSTHVLDTA-------TGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAYF 70 (112)
T ss_pred ceeEEEeCC-------CCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhhh
Confidence 556677642 58999999999997654 5688999999999863 357789999998776664
No 42
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=95.46 E-value=0.024 Score=60.11 Aligned_cols=49 Identities=33% Similarity=0.565 Sum_probs=36.2
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee----------------eeEeCCCceEEECccCCccEEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE----------------RSITDRDGYYKLDQVTSNRYTIE 323 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~----------------~~~TD~dG~f~l~~L~pG~Ytv~ 323 (1150)
+.|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.+-
T Consensus 30 l~l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~~ 99 (183)
T PF00775_consen 30 LVLHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPIP 99 (183)
T ss_dssp EEEEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEES
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCCC
Confidence 4689999999999999999998 2321 14899999999999999999863
No 43
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=95.40 E-value=0.025 Score=54.98 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=43.2
Q ss_pred EEEEEEeC-CCccccCeEEEE---cce---ee--eEeCCCceEE-----ECccCCccEEEEEEecccc
Q 001120 277 VGGRVVDE-NDMGVEGVKILV---DGH---ER--SITDRDGYYK-----LDQVTSNRYTIEAVKVHYK 330 (1150)
Q Consensus 277 V~G~V~d~-~G~plaGA~V~l---~G~---~~--~~TD~dG~f~-----l~~L~pG~Ytv~~~~~~y~ 330 (1150)
|+=.|+|. .|+|.+|+.|.| ++. .+ ++||+||++. .+.+++|.|+|+.....|.
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Yf 70 (112)
T TIGR02962 3 LSTHVLDTTSGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDYF 70 (112)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhhh
Confidence 44578886 899999999999 332 22 5899999997 4567899999999888873
No 44
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=95.32 E-value=0.057 Score=57.26 Aligned_cols=67 Identities=22% Similarity=0.452 Sum_probs=40.2
Q ss_pred EEEEEEEe-CCcceeceEEEEEECCCCcccCCCCCC-CcccccceeeEEEeCCCceEEECccCCeeEEEE
Q 001120 171 EIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSG-NALGERKALCHAVSDADGKFMFKSVPCGQYELV 238 (1150)
Q Consensus 171 ~i~G~V~~-~G~Pl~Ga~V~L~~~~~~~~~~~~g~~-~~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v~ 238 (1150)
.+.|+|++ +|+||+||.|.++..+..-........ ..+ .........||++|+|.|..+.||.|.+-
T Consensus 31 ~l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~-~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~~ 99 (183)
T PF00775_consen 31 VLHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQP-DFNLRGRFRTDADGRYSFRTIKPGPYPIP 99 (183)
T ss_dssp EEEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSS-TTTTEEEEEECTTSEEEEEEE----EEES
T ss_pred EEEEEEECCCCCCCCCcEEEEEecCCCCcccccccccccc-CCCcceEEecCCCCEEEEEeeCCCCCCCC
Confidence 47899996 699999999999987532111000000 011 12346889999999999999999999763
No 45
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=95.32 E-value=0.017 Score=62.56 Aligned_cols=48 Identities=33% Similarity=0.629 Sum_probs=40.7
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee-------------------eeEeCCCceEEECccCCccEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 322 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~-------------------~~~TD~dG~f~l~~L~pG~Ytv 322 (1150)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-|.||.|.+
T Consensus 66 i~l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp~ 137 (220)
T cd03464 66 IIVHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYPW 137 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 4689999999999999999998 2210 1489999999999999999976
No 46
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=95.22 E-value=0.042 Score=54.49 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=42.7
Q ss_pred ccCeEEEEc-cee---eeEeCCCceEEECccCCccEEEEEEeccccccceeeEEEc
Q 001120 289 VEGVKILVD-GHE---RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVL 340 (1150)
Q Consensus 289 laGA~V~l~-G~~---~~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~ 340 (1150)
.++.+|.|+ |.. .+....||.|.|.+|++|+|.|++..+.|.|.+. .+.+.
T Consensus 7 ~~~t~V~L~~g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~F~~~-RVdV~ 61 (123)
T PF09430_consen 7 PSSTRVTLNGGQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYVFPPY-RVDVS 61 (123)
T ss_pred CCCEEEEEeCCCccceEEEecCCCEEEeCCCCCceEEEEEECCCccccCE-EEEEe
Confidence 466778885 343 5789999999999999999999999999999986 56665
No 47
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=95.17 E-value=0.026 Score=58.42 Aligned_cols=48 Identities=27% Similarity=0.504 Sum_probs=40.7
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee-------------------eeEeCCCceEEECccCCccEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 322 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~-------------------~~~TD~dG~f~l~~L~pG~Ytv 322 (1150)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|.+
T Consensus 16 l~l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~ 87 (158)
T cd03459 16 IILEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPW 87 (158)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCC
Confidence 4589999999999999999998 2210 1489999999999999999986
No 48
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=95.07 E-value=0.044 Score=53.79 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=47.3
Q ss_pred eEEEEEEeecCCccccCCCCCCcceEEEEEeCC-C---ceEEEEEeCCCceEE--E--ccccCccEEEEEEcCCce
Q 001120 76 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS-G---DLISSVITSSEGSYL--F--KNIIPGKYKLRASHPNLS 143 (1150)
Q Consensus 76 ~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~-g---~~i~~ttTd~~G~f~--f--~~L~pG~Y~l~a~~~g~~ 143 (1150)
.|+=.|++.. +|.|.+||.|+|+..+ + +.+.+.+||+||+.. + ..+.+|.|+|++.-..|.
T Consensus 8 ~ittHVLDt~-------~G~PAaGV~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf 76 (121)
T cd05821 8 PLMVKVLDAV-------RGSPAANVAVKVFKKTADGSWEPFASGKTTETGEIHGLTTDEQFTEGVYKVEFDTKAYW 76 (121)
T ss_pred CcEEEEEECC-------CCccCCCCEEEEEEecCCCceEEEEEEEECCCCCCCCccCccccCCeeEEEEEehhHhh
Confidence 3677787752 6899999999998754 3 568899999999995 2 345689999998766664
No 49
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=95.00 E-value=0.051 Score=52.72 Aligned_cols=60 Identities=18% Similarity=0.414 Sum_probs=46.4
Q ss_pred EEEEEEeecCCccccCCCCCCcceEEEEEeCC--C--ceEEEEEeCCCceEEE----ccccCccEEEEEEcCCce
Q 001120 77 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G--DLISSVITSSEGSYLF----KNIIPGKYKLRASHPNLS 143 (1150)
Q Consensus 77 IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~--g--~~i~~ttTd~~G~f~f----~~L~pG~Y~l~a~~~g~~ 143 (1150)
|+-.|++.. .|.|.+|+.|+|...+ + +.+.+.+||+||+..= ..+.+|.|+|+..-..|-
T Consensus 3 lStHVLDt~-------~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~~Yf 70 (113)
T cd05469 3 LMVKVLDAV-------RGSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITEEEFXAGVYRVEFDTKSYW 70 (113)
T ss_pred ceEEEEeCC-------CCccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCccccccccceEEEEEEehHHhH
Confidence 566777652 6899999999998754 2 5688999999999852 356789999998766553
No 50
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=94.97 E-value=0.025 Score=62.34 Aligned_cols=48 Identities=31% Similarity=0.454 Sum_probs=40.8
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee--------------eeEeCCCceEEECccCCccEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 322 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~--------------~~~TD~dG~f~l~~L~pG~Ytv 322 (1150)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|-|
T Consensus 99 l~v~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 99 LLIRGTVRDLSGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 4689999999999999999999 3321 1489999999999999999965
No 51
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=94.92 E-value=0.1 Score=56.36 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=50.0
Q ss_pred cCcEEEEEEEeCCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECccCCeeEEEEEEEe
Q 001120 168 PGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYK 242 (1150)
Q Consensus 168 ~g~~i~G~V~~~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v~~~~~ 242 (1150)
.|-.+..+|+-+|+|++|+.|.+....... .........+||++|++.|.-..+|.|.|.+.+.
T Consensus 149 ~g~~~~~~vl~~GkPl~~a~V~~~~~~~~~-----------~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~~ 212 (215)
T PF10670_consen 149 AGDPLPFQVLFDGKPLAGAEVEAFSPGGWY-----------DVEHEAKTLKTDANGRATFTLPRPGLWLIRASHK 212 (215)
T ss_pred CCCEEEEEEEECCeEcccEEEEEEECCCcc-----------ccccceEEEEECCCCEEEEecCCCEEEEEEEEEe
Confidence 455688899999999999999998764210 0000146899999999999988999999999764
No 52
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=94.89 E-value=0.039 Score=59.92 Aligned_cols=48 Identities=35% Similarity=0.630 Sum_probs=40.7
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee-------------------eeEeCCCceEEECccCCccEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 322 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~-------------------~~~TD~dG~f~l~~L~pG~Ytv 322 (1150)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|.+
T Consensus 61 i~l~G~V~D~~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~ 132 (220)
T TIGR02422 61 IIVHGRVLDEDGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPW 132 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 4689999999999999999998 2310 2479999999999999999976
No 53
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=94.87 E-value=31 Score=49.77 Aligned_cols=172 Identities=13% Similarity=0.190 Sum_probs=94.2
Q ss_pred EEEEE-EcCeeEEEEEEeecCCCCCceeeeCceEEEEEcCcccceEEEEe--eeEE--EEEEEeccCCCCceEEEEEEeC
Q 001120 392 NFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQA--LVNV--LGNVACKERCGPLVTVTLMRLG 466 (1150)
Q Consensus 392 ~f~f~-L~pG~Y~l~~~~~~~~~~~G~~~~p~~~~V~V~~p~~~I~F~q~--~a~V--~G~V~~~~~~~~~~~VtL~~~~ 466 (1150)
+.+.. ..||.|+|...+.. .+.+...+..++|..++.++.+.-. .+.+ .+++.+.-..+.+++..+..-|
T Consensus 1831 ~v~~Tf~~aG~ytV~L~AsN-----~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864 1831 HACMTFPDAGTFAIRLNASN-----AVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGG 1905 (2740)
T ss_pred eeEEecCCCeEEEEEEEEEc-----ccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCC
Confidence 45667 89999999999863 3334555666666555555543311 0000 1112222122323444443332
Q ss_pred CccccCCcceeEEEecCCCcEEEcccCCccEEEEEEeecccccccCCCeeEEceEEEEEEecCcccceeEEE--------
Q 001120 467 QKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQ-------- 538 (1150)
Q Consensus 467 ~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~c~~~~~~~v~V~~~~~~~v~F~q-------- 538 (1150)
+. .... +...+|+-.=-.||+|.|.+... ...-|.+....|+|.+. +.++.+..
T Consensus 1906 gs--------~~~~-t~~~t~~HsY~~~G~Y~VtV~A~--------N~Vs~~~a~~~V~Vle~-V~gL~I~~~c~~~~~~ 1967 (2740)
T TIGR00864 1906 AA--------PEVL-QPGPRFSHSFPRVDDHMVNLRAK--------NEVSCAQANLHIEVLEA-VRGLQIPDCCAAGIAT 1967 (2740)
T ss_pred CC--------ceee-cCCCeEEeecCCCCcEEEEEEEE--------eccceeeeeEEEEEEEe-ccceEecCCcccceec
Confidence 21 1112 23446666666799999999864 23334666666766432 44443332
Q ss_pred --e-eeEEEEeeccceeEEEE--ecCCCeeeEEEecc-ceeEEecCCceEEEEE
Q 001120 539 --K-GYWLNVISTHDVDAYMT--QQDGSHVPLKVKKG-SQHICVESPGVHNLHF 586 (1150)
Q Consensus 539 --~-Gy~~~i~ssh~~~~~~~--~~~~~~~~l~l~kG-~~~~c~~~~G~Y~~~~ 586 (1150)
. =|...+...+++...|. .....+-.+.+..| ...+..+.+|.|+|++
T Consensus 1968 g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~~~~G~~~I~v 2021 (2740)
T TIGR00864 1968 GEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTAEAAGLLEIQL 2021 (2740)
T ss_pred CceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEccCCCcEEEEEE
Confidence 2 24556788888887764 12112223455555 3566778999999998
No 54
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.85 E-value=0.065 Score=55.47 Aligned_cols=68 Identities=19% Similarity=0.357 Sum_probs=45.5
Q ss_pred EEEEEEEe-CCcceeceEEEEEECCCCcccCCCCCCC-ccc--ccceeeEEEeCCCceEEECccCCeeEEEE
Q 001120 171 EIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGN-ALG--ERKALCHAVSDADGKFMFKSVPCGQYELV 238 (1150)
Q Consensus 171 ~i~G~V~~-~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~-~~~--~g~~~~~a~TDa~G~f~f~~LppG~Y~v~ 238 (1150)
.+.|+|++ +|+||+||.|.++-.+..-....+.... .+. .........||++|+|+|..+.||.|.+-
T Consensus 17 ~l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~p 88 (158)
T cd03459 17 ILEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPWR 88 (158)
T ss_pred EEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCCC
Confidence 47899995 6999999999999875321110000000 000 11124678999999999999999999853
No 55
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=94.81 E-value=0.048 Score=52.42 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=47.6
Q ss_pred eEEEEEEeecCCccccCCCCCCcceEEEEEeCCC---ceEEEEEeCCCceEEE-----ccccCccEEEEEEcCCce
Q 001120 76 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYLF-----KNIIPGKYKLRASHPNLS 143 (1150)
Q Consensus 76 ~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g---~~i~~ttTd~~G~f~f-----~~L~pG~Y~l~a~~~g~~ 143 (1150)
.++-.|++. +.|.|.+||+|+|++.++ +.+.++.||+||+..- +.+.+|.|+|++....|.
T Consensus 10 ~LTTHVLDt-------a~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdYf 78 (124)
T COG2351 10 RLTTHVLDT-------ASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDYF 78 (124)
T ss_pred eeeeeeeec-------ccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchhh
Confidence 456667664 258999999999998776 4788999999999883 345678999998776664
No 56
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=94.80 E-value=0.061 Score=55.02 Aligned_cols=53 Identities=30% Similarity=0.424 Sum_probs=43.6
Q ss_pred EeEEEeeEcCCCCccCCcEEEEEeCC--C--------------ceeEEEeeCCCceEEecCCCCCcEEEE
Q 001120 895 YSATGTITLLSGQPKDGVSVEARSES--K--------------GYYEETVTDTSGSYRLRGLHPDTTYVI 948 (1150)
Q Consensus 895 ~s~~G~v~~~~g~p~~gv~v~~~~~~--~--------------~~~~~~~Td~~G~~~i~gL~Pg~~y~i 948 (1150)
..+.|+|++.+|.|+++|.|++-..+ + ..+....||++|.|+++.+.||. |.+
T Consensus 12 l~l~G~V~D~~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~-Y~~ 80 (146)
T cd00421 12 LTLTGTVLDGDGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGP-YPI 80 (146)
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCC-CCC
Confidence 34589999999999999999986322 1 35778999999999999999996 543
No 57
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=94.75 E-value=0.11 Score=46.09 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=43.1
Q ss_pred ccCeEEEEcceeeeEeCCCceEEECccCCccEEEEEEeccccccceeeEEEcCCcceeeeEEE
Q 001120 289 VEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKA 351 (1150)
Q Consensus 289 laGA~V~l~G~~~~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~~~v~v~p~~~~i~dI~~ 351 (1150)
.+||.|.+||+....|. ..+..|++|.|+|++++++|..... .+.+.+++....++.+
T Consensus 10 p~gA~V~vdg~~~G~tp----~~~~~l~~G~~~v~v~~~Gy~~~~~-~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 10 PSGAEVYVDGKYIGTTP----LTLKDLPPGEHTVTVEKPGYEPYTK-TVTVKPGETTTVNVTL 67 (71)
T ss_pred CCCCEEEECCEEeccCc----ceeeecCCccEEEEEEECCCeeEEE-EEEECCCCEEEEEEEE
Confidence 46999999998887443 4777799999999999999865544 5777776544444443
No 58
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=94.74 E-value=0.033 Score=62.48 Aligned_cols=48 Identities=27% Similarity=0.557 Sum_probs=41.1
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee--------------eeEeCCCceEEECccCCccEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 322 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~--------------~~~TD~dG~f~l~~L~pG~Ytv 322 (1150)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.|
T Consensus 133 l~v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~Ypi 199 (281)
T TIGR02438 133 LVFSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQI 199 (281)
T ss_pred EEEEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 4589999999999999999998 3421 2489999999999999999976
No 59
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.72 E-value=0.045 Score=57.99 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=40.2
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee------------------eeEeCCCceEEECccCCccEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE------------------RSITDRDGYYKLDQVTSNRYTI 322 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~------------------~~~TD~dG~f~l~~L~pG~Ytv 322 (1150)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|..
T Consensus 37 l~l~G~V~D~~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~ 107 (185)
T cd03463 37 ITLEGRVYDGDGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVPG 107 (185)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcCC
Confidence 4689999999999999999998 2210 1479999999999999999974
No 60
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=94.72 E-value=0.036 Score=62.28 Aligned_cols=48 Identities=31% Similarity=0.548 Sum_probs=41.0
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee--------------eeEeCCCceEEECccCCccEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 322 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~--------------~~~TD~dG~f~l~~L~pG~Ytv 322 (1150)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|.|
T Consensus 125 l~l~G~V~D~~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~Ypi 191 (282)
T cd03460 125 LVMHGTVTDTDGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGV 191 (282)
T ss_pred EEEEEEEECCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcC
Confidence 4589999999999999999998 3321 2489999999999999999976
No 61
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=94.70 E-value=0.042 Score=60.94 Aligned_cols=49 Identities=31% Similarity=0.497 Sum_probs=41.4
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee--------------eeEeCCCceEEECccCCccEEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTIE 323 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~--------------~~~TD~dG~f~l~~L~pG~Ytv~ 323 (1150)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.+-
T Consensus 105 l~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypip 172 (256)
T cd03458 105 LFVHGTVTDTDGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPIP 172 (256)
T ss_pred EEEEEEEEcCCCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccCC
Confidence 4589999999999999999998 3321 14899999999999999999764
No 62
>smart00095 TR_THY Transthyretin.
Probab=94.69 E-value=0.067 Score=52.51 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=46.6
Q ss_pred EEEEEEeecCCccccCCCCCCcceEEEEEeCC-C---ceEEEEEeCCCceEE--E--ccccCccEEEEEEcCCce
Q 001120 77 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS-G---DLISSVITSSEGSYL--F--KNIIPGKYKLRASHPNLS 143 (1150)
Q Consensus 77 IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~-g---~~i~~ttTd~~G~f~--f--~~L~pG~Y~l~a~~~g~~ 143 (1150)
|+=.|++.. .|.|.+|+.|+|+..+ + +.+.+..||+||+.. + ..+.+|.|+|++.-..|.
T Consensus 6 lTtHVLDt~-------~G~PAagv~V~L~~~~~~~~w~~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf 73 (121)
T smart00095 6 LMVKVLDAV-------RGSPAVNVAVKVFKKTEEGTWEPFASGKTNESGEIHELTTDEKFVEGLYKVEFDTKSYW 73 (121)
T ss_pred eEEEEEECC-------CCccCCCCEEEEEEeCCCCceEEEEEEecCCCccccCccCcccccceEEEEEEehhHhH
Confidence 566787752 5899999999998754 3 568899999999995 2 346789999998665553
No 63
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=94.66 E-value=0.068 Score=59.00 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=45.9
Q ss_pred EEEEEEEe-CCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECccCCeeEEE
Q 001120 171 EIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYEL 237 (1150)
Q Consensus 171 ~i~G~V~~-~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v 237 (1150)
.+.|+|.+ +|+||+||.|.++-.+..- +-.+..+............||++|+|.|..+.||.|-+
T Consensus 100 ~v~G~V~D~~G~Pv~~A~VeiWqad~~G--~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 100 LIRGTVRDLSGTPVAGAVIDVWHSTPDG--KYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred EEEEEEEcCCCCCcCCcEEEEECCCCCC--CCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 47899995 6999999999999875321 11111011011223578899999999999999999965
No 64
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=94.64 E-value=0.04 Score=62.01 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=40.8
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee--------------eeEeCCCceEEECccCCccEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 322 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~--------------~~~TD~dG~f~l~~L~pG~Ytv 322 (1150)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|-|
T Consensus 129 l~v~G~V~D~~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~Ypi 195 (285)
T TIGR02439 129 LFLHGQVTDADGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGC 195 (285)
T ss_pred EEEEEEEECCCCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcC
Confidence 4589999999999999999998 3321 1489999999999999999976
No 65
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.62 E-value=0.055 Score=58.84 Aligned_cols=69 Identities=28% Similarity=0.444 Sum_probs=54.2
Q ss_pred ceEEEEEEeecCCccccCCCCCCcceEEEEEeCC--C----------c------eEEEEEeCCCceEEEccccCccEEEE
Q 001120 75 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G----------D------LISSVITSSEGSYLFKNIIPGKYKLR 136 (1150)
Q Consensus 75 ~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~--g----------~------~i~~ttTd~~G~f~f~~L~pG~Y~l~ 136 (1150)
..|+|+|.+. +|.|++||.|++...+ | . ....+.||++|+|.|.-+.||.|-..
T Consensus 73 i~l~G~VlD~--------~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~ 144 (226)
T COG3485 73 ILLEGRVLDG--------NGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWR 144 (226)
T ss_pred EEEEEEEECC--------CCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCC
Confidence 5689999985 4799999999998654 4 1 23468899999999999999999999
Q ss_pred EEcCCceEEeeccEEEEE
Q 001120 137 ASHPNLSVEVRGSTEVEL 154 (1150)
Q Consensus 137 a~~~g~~~~~~~~~~V~v 154 (1150)
...+.|... -+.+.|
T Consensus 145 ~~~~~~R~a---Hih~~v 159 (226)
T COG3485 145 NGGPMWRPA---HIHFSV 159 (226)
T ss_pred CCCCcCccc---eeEEEE
Confidence 888877432 245554
No 66
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=94.58 E-value=0.042 Score=61.66 Aligned_cols=48 Identities=31% Similarity=0.480 Sum_probs=41.2
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee--------------eeEeCCCceEEECccCCccEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 322 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~--------------~~~TD~dG~f~l~~L~pG~Ytv 322 (1150)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|.+
T Consensus 121 l~v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypi 187 (277)
T cd03461 121 CFVHGRVTDTDGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPI 187 (277)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 4689999999999999999998 3311 2489999999999999999986
No 67
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=94.56 E-value=0.037 Score=60.96 Aligned_cols=48 Identities=33% Similarity=0.437 Sum_probs=40.7
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee--------------eeEeCCCceEEECccCCccEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 322 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~--------------~~~TD~dG~f~l~~L~pG~Ytv 322 (1150)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|-|
T Consensus 100 l~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~Ypi 166 (247)
T cd03462 100 LLFRGTVKDLAGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQI 166 (247)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcCC
Confidence 4589999999999999999998 3311 2489999999999999999965
No 68
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=94.55 E-value=0.037 Score=53.77 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=43.2
Q ss_pred EEEEEEeecCCccccCCCCCCcceEEEEEeCC--C--ceEEEEEeCCCceEE-----EccccCccEEEEEEcCCc
Q 001120 77 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G--DLISSVITSSEGSYL-----FKNIIPGKYKLRASHPNL 142 (1150)
Q Consensus 77 IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~--g--~~i~~ttTd~~G~f~-----f~~L~pG~Y~l~a~~~g~ 142 (1150)
|+=.|++.. .|.|.+|+.|+|...+ + ..+.+.+||+||+.. -..+.+|.|+|+..-..|
T Consensus 3 iStHVLDt~-------~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Y 70 (112)
T PF00576_consen 3 ISTHVLDTT-------TGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTGDY 70 (112)
T ss_dssp EEEEEEETT-------TTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHHHH
T ss_pred cEEEEeeCC-------CCCCccCCEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHHHh
Confidence 667787752 5899999999998554 2 668899999999992 246778999999865444
No 69
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=94.54 E-value=0.1 Score=58.00 Aligned_cols=55 Identities=24% Similarity=0.440 Sum_probs=44.3
Q ss_pred ceEEEEEEeecCCccccCCCCCCcceEEEEEeCC--C------------ceEEEEEeCCCceEEEccccCccEEEEE
Q 001120 75 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G------------DLISSVITSSEGSYLFKNIIPGKYKLRA 137 (1150)
Q Consensus 75 ~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~--g------------~~i~~ttTd~~G~f~f~~L~pG~Y~l~a 137 (1150)
..+.|+|.+. +|+|++||.|++...+ | ..-....||++|+|.|.-+.||.|-+-.
T Consensus 105 l~l~G~V~D~--------~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypip~ 173 (256)
T cd03458 105 LFVHGTVTDT--------DGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPIPP 173 (256)
T ss_pred EEEEEEEEcC--------CCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccCCC
Confidence 3478999975 4699999999998654 4 1123678999999999999999998754
No 70
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=94.43 E-value=0.11 Score=51.42 Aligned_cols=56 Identities=30% Similarity=0.537 Sum_probs=43.5
Q ss_pred CCCcceEEEEEeCCCce-EEEEEeCCCceEEEccccCccEEEEEEcCCceEEeeccEEEEEc
Q 001120 95 GGPSNVNVELLSHSGDL-ISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 155 (1150)
Q Consensus 95 ~plaGv~V~L~~~~g~~-i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~g~~~~~~~~~~V~v~ 155 (1150)
.-++..+|.|.. |.. ..++....||.|.|.+|++|.|.|.+.++.|.+. ...|.|.
T Consensus 5 ~~~~~t~V~L~~--g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~F~---~~RVdV~ 61 (123)
T PF09430_consen 5 NLPSSTRVTLNG--GQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYVFP---PYRVDVS 61 (123)
T ss_pred cCCCCEEEEEeC--CCccceEEEecCCCEEEeCCCCCceEEEEEECCCcccc---CEEEEEe
Confidence 356778888832 322 3477889999999999999999999999999886 2555554
No 71
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.42 E-value=0.093 Score=55.67 Aligned_cols=65 Identities=20% Similarity=0.337 Sum_probs=44.9
Q ss_pred EEEEEEEe-CCcceeceEEEEEECCCCcccCCCCCCCcc----cccceeeEEEeCCCceEEECccCCeeEEE
Q 001120 171 EIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNAL----GERKALCHAVSDADGKFMFKSVPCGQYEL 237 (1150)
Q Consensus 171 ~i~G~V~~-~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~----~~g~~~~~a~TDa~G~f~f~~LppG~Y~v 237 (1150)
.+.|+|.+ +|+||+||.|.++..+..- +-.+..+.. .+........||++|+|+|..+.||.|-.
T Consensus 38 ~l~G~V~D~~g~Pi~gA~VeiWqad~~G--~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~ 107 (185)
T cd03463 38 TLEGRVYDGDGAPVPDAMLEIWQADAAG--RYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVPG 107 (185)
T ss_pred EEEEEEECCCCCCCCCCEEEEEcCCCCC--ccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcCC
Confidence 47899995 6999999999999875321 111111000 11112457899999999999999999864
No 72
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=94.42 E-value=0.11 Score=56.15 Aligned_cols=57 Identities=30% Similarity=0.320 Sum_probs=46.6
Q ss_pred CceEEEEEEeecCCccccCCCCCCcceEEEEEeCCCce-----EEEEEeCCCceEEEccccCccEEEEEEc
Q 001120 74 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDL-----ISSVITSSEGSYLFKNIIPGKYKLRASH 139 (1150)
Q Consensus 74 g~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g~~-----i~~ttTd~~G~f~f~~L~pG~Y~l~a~~ 139 (1150)
|-.+..+|+-. |+|++|+.|.+...++.. ....+||++|++.|.-..||.|.|.+.|
T Consensus 150 g~~~~~~vl~~---------GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~ 211 (215)
T PF10670_consen 150 GDPLPFQVLFD---------GKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRASH 211 (215)
T ss_pred CCEEEEEEEEC---------CeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEEEE
Confidence 44567777753 699999999998776432 5678999999999998899999999876
No 73
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=94.41 E-value=0.05 Score=58.05 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=40.4
Q ss_pred eEEEEEEEeCCCccccCeEEEE-----ccee-------------------eeEeCCCceEEECccCCccEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 322 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l-----~G~~-------------------~~~TD~dG~f~l~~L~pG~Ytv 322 (1150)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|..
T Consensus 40 l~l~G~V~D~~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 40 IRLEGRVLDGDGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 4689999999999999999998 2210 1479999999999999999976
No 74
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=94.35 E-value=0.24 Score=47.04 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=46.5
Q ss_pred EEEEeeeEeEEEeeEc-CCCCccCCcEEEEEe-CCCceeEEEeeCCCceEEecCCCCCcEEEEEEEE
Q 001120 888 FQATRVAYSATGTITL-LSGQPKDGVSVEARS-ESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 952 (1150)
Q Consensus 888 ~~~~r~~~s~~G~v~~-~~g~p~~gv~v~~~~-~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~~~ 952 (1150)
+.+++-.....=.|++ .+|+|++||.|++.+ .++....+.+||++|..++....+. +.+.++.
T Consensus 6 l~ak~~~~~~~v~v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~~~~--~~viA~~ 70 (97)
T PF11974_consen 6 LTAKQGPDGLLVWVTSLSTGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDSTKKP--FLVIARK 70 (97)
T ss_pred EEEEEcCCCEEEEEeeCCCCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCCCCC--EEEEEEE
Confidence 3444444444445665 569999999999999 7888999999999999999998444 4444443
No 75
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=94.21 E-value=0.098 Score=57.72 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=46.0
Q ss_pred EEEEEEEe-CCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECccCCeeEEEE
Q 001120 171 EIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 238 (1150)
Q Consensus 171 ~i~G~V~~-~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v~ 238 (1150)
.+.|+|++ +|+||+||.|.++..+..-....+.. ..+ .........||++|+|.|..+.||.|-+-
T Consensus 101 ~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~-~~~-~~~~RG~~~Td~~G~y~F~Ti~P~~YpiP 167 (247)
T cd03462 101 LFRGTVKDLAGAPVAGAVIDVWHSTPDGKYSGFHP-NIP-EDYYRGKIRTDEDGRYEVRTTVPVPYQIP 167 (247)
T ss_pred EEEEEEEcCCCCCcCCcEEEEECCCCCCCcCCCCC-CCC-CCCCEEEEEeCCCCCEEEEEECCCCcCCC
Confidence 46899995 69999999999998753211111100 011 11235678999999999999999999763
No 76
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=93.98 E-value=0.094 Score=58.97 Aligned_cols=66 Identities=18% Similarity=0.336 Sum_probs=46.4
Q ss_pred EEEEEEEe-CCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECccCCeeEEEE
Q 001120 171 EIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 238 (1150)
Q Consensus 171 ~i~G~V~~-~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v~ 238 (1150)
.+.|+|++ +|+||+||.|.++-.+..-..-.+ ..........+...||++|+|.|..+.||.|.+-
T Consensus 126 ~l~G~V~D~~G~PI~~A~VeiWqad~~G~Ys~~--~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~YpiP 192 (282)
T cd03460 126 VMHGTVTDTDGKPVPGAKVEVWHANSKGFYSHF--DPTQSPFNLRRSIITDADGRYRFRSIMPSGYGVP 192 (282)
T ss_pred EEEEEEECCCCCCcCCcEEEEECCCCCCCcCCC--CCCCCCCCCceEEEeCCCCCEEEEEECCCCCcCC
Confidence 46899995 699999999999987532111000 0000112246789999999999999999999764
No 77
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=93.97 E-value=0.13 Score=56.02 Aligned_cols=68 Identities=16% Similarity=0.302 Sum_probs=46.0
Q ss_pred cEEEEEEEe-CCcceeceEEEEEECCCCcccCCCC-CCCccc--ccceeeEEEeCCCceEEECccCCeeEEE
Q 001120 170 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQG-SGNALG--ERKALCHAVSDADGKFMFKSVPCGQYEL 237 (1150)
Q Consensus 170 ~~i~G~V~~-~G~Pl~Ga~V~L~~~~~~~~~~~~g-~~~~~~--~g~~~~~a~TDa~G~f~f~~LppG~Y~v 237 (1150)
..+.|+|++ +|+||+||.|.++..+..-....+. ....+. +........||++|+|+|..+.||.|.+
T Consensus 66 i~l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp~ 137 (220)
T cd03464 66 IIVHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYPW 137 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 357899995 6999999999999875321110000 000000 1123568899999999999999999976
No 78
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=93.94 E-value=6.7 Score=54.40 Aligned_cols=184 Identities=18% Similarity=0.226 Sum_probs=105.3
Q ss_pred CCCCCcceEEEEEeCCCceEEEEEeCCCceEEEcc-ccCccEEEEEEcCC-ceEEe-ecc----EEEEEcc---cc--ee
Q 001120 93 KGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKN-IIPGKYKLRASHPN-LSVEV-RGS----TEVELGF---EN--GE 160 (1150)
Q Consensus 93 ~g~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~-L~pG~Y~l~a~~~g-~~~~~-~~~----~~V~v~~---~~--~~ 160 (1150)
+|+|++|+.+.+.+.+|+++.+.+||++|+..|.+ -.+..|.+...... |.... .+. ..+.|.. .+ ..
T Consensus 316 sg~P~~g~~v~~~~~ngevl~~~~tds~G~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~d~s~f~V~g~~~~~~~~k 395 (1621)
T COG2373 316 SGKPVPGVEVSVLAGNGEVLVSGTTDSQGHAKFSNAKKPAALLLARKEDGDFLGLDLTGGVFDLSDFDVEGRAAPGYGLK 395 (1621)
T ss_pred CCCCCCCcEEEEEecCCcEEeeeEEccccceecccccCCceEEEEecCCCceEEEEcCCCccccccccccceecCCCceE
Confidence 58999999999999999999999999999999997 55666666654332 22210 000 1222221 11 11
Q ss_pred ----eeeeeeecCcEEEEEEE--e-CCc-ceeceEEEEEEC--CCCcccCCCCCCCcccccceeeEEEeCCCceEEEC--
Q 001120 161 ----VDDIFFAPGYEIRGLVV--A-QGN-PILGVHIYLYSD--DVGKVDCPQGSGNALGERKALCHAVSDADGKFMFK-- 228 (1150)
Q Consensus 161 ----~~~~l~i~g~~i~G~V~--~-~G~-Pl~Ga~V~L~~~--~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~-- 228 (1150)
-+..+-.+|-.+...+. + ++. ++.++-+.+.-. ++..+ .....+.|++|-++|.
T Consensus 396 ~y~ftDRglYRpGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG~~~--------------~~~~~~~~~~G~~~~~~~ 461 (1621)
T COG2373 396 VYLFTDRGLYRPGETVHVNALLRDFDGKTALDNQPLKLRVLDPDGSVL--------------RTLTITLDEEGLYELSFP 461 (1621)
T ss_pred EEEecCcccCCCCceeeeeeeehhhcccccccCCCeEEEEECCCCcEE--------------EEEEEeccccCceEEeee
Confidence 02223334444444433 1 344 667766655433 22111 1345677888877664
Q ss_pred ---ccCCeeEEEEEEEecCCe----EE---EecCceEEEEEeccceeeeccEEEeceEEEEEEE--eCCCccccCeEEE
Q 001120 229 ---SVPCGQYELVPHYKGENT----VF---DVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVV--DENDMGVEGVKIL 295 (1150)
Q Consensus 229 ---~LppG~Y~v~~~~~~~~~----~~---~~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V~--d~~G~plaGA~V~ 295 (1150)
|-+.|.|++.....+... .| ++.|..+.|.+..+... -..|-.+.+.|. .-.|.|++|.++.
T Consensus 462 l~~na~tG~w~l~~~~~~~~~~~s~~f~V~df~p~r~~i~l~~~k~~-----~~~g~~v~~~v~~~yL~GaPa~g~~~~ 535 (1621)
T COG2373 462 LPENALTGGYTLELYTGGKSAVISMSFRVEDFIPDRFKINLTLDKTE-----WVPGKDVKIKVDLRYLYGAPAAGLTVQ 535 (1621)
T ss_pred CCCCCCcceEEEEEEeCCccceeeeeEEhhHhCCceEEEeccccccc-----ccCCCcEEEEEEEEecCCCcccCceee
Confidence 334589999998765321 12 25666666665543222 122333444443 3368888888886
No 79
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=93.92 E-value=0.12 Score=61.06 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=51.2
Q ss_pred eEEEEEEeecCCccccCCCCCCcceEEEEEeCCCceEEEEEeCCCceEEEccccCccEEEEEEcCCceEEeeccEEEEEc
Q 001120 76 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 155 (1150)
Q Consensus 76 ~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~g~~~~~~~~~~V~v~ 155 (1150)
.|.|.|.+. +|.|+++|+|.+...+ ...+|..+|-|==- |+||+|.|.++++||.... ..|+|.
T Consensus 379 GIkG~V~D~--------~G~~I~NA~IsV~gin----Hdv~T~~~GDYWRL-L~PG~y~vta~A~Gy~~~t---k~v~V~ 442 (500)
T KOG2649|consen 379 GIKGLVFDD--------TGNPIANATISVDGIN----HDVTTAKEGDYWRL-LPPGKYIITASAEGYDPVT---KTVTVP 442 (500)
T ss_pred ccceeEEcC--------CCCccCceEEEEecCc----CceeecCCCceEEe-eCCcceEEEEecCCCccee---eEEEeC
Confidence 388999986 5799999999997543 35678889988644 8999999999999998762 355554
Q ss_pred c
Q 001120 156 F 156 (1150)
Q Consensus 156 ~ 156 (1150)
.
T Consensus 443 ~ 443 (500)
T KOG2649|consen 443 P 443 (500)
T ss_pred C
Confidence 3
No 80
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=93.87 E-value=0.083 Score=59.29 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=52.2
Q ss_pred EEEeeEcCCCCccCCcEEEEEe--CCC------------ceeEEEeeCCCceEEecCCCCCcEEEEEEEEecCC--CCcc
Q 001120 897 ATGTITLLSGQPKDGVSVEARS--ESK------------GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGF--GSTK 960 (1150)
Q Consensus 897 ~~G~v~~~~g~p~~gv~v~~~~--~~~------------~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~~~~~~~--~~~~ 960 (1150)
+.|+|.+.+|+|++|+.|++-- .++ ..++...||++|+|+++-+.|+. |-|-...+.+. ..-.
T Consensus 135 v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~-YpiP~dGp~G~lL~~~G 213 (281)
T TIGR02438 135 FSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAP-YQIPTDGPTGKFIAAAG 213 (281)
T ss_pred EEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCC-cCCCCCCchHHHHHhcc
Confidence 4899999999999999999842 112 24778999999999999999997 55432111000 0001
Q ss_pred eeccCCceEEEEecC
Q 001120 961 IERASPESVTVKVGS 975 (1150)
Q Consensus 961 i~~~~p~~~~v~v~~ 975 (1150)
-+..-|.|+.+.|..
T Consensus 214 rh~~RpaHIHf~V~a 228 (281)
T TIGR02438 214 GHPWRPAHLHLKVSA 228 (281)
T ss_pred cCCCCCCEEEEEEEC
Confidence 122347888877653
No 81
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=93.79 E-value=0.11 Score=58.59 Aligned_cols=66 Identities=20% Similarity=0.299 Sum_probs=46.6
Q ss_pred EEEEEEEe-CCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECccCCeeEEEE
Q 001120 171 EIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 238 (1150)
Q Consensus 171 ~i~G~V~~-~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v~ 238 (1150)
.+.|+|++ +|+||+||.|.++-.+..- +-.............+...||++|+|.|..+.||.|-+-
T Consensus 130 ~v~G~V~D~~G~PI~gA~VeIWqad~~G--~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~YpiP 196 (285)
T TIGR02439 130 FLHGQVTDADGKPIAGAKVELWHANTKG--NYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGCP 196 (285)
T ss_pred EEEEEEECCCCCCcCCcEEEEEccCCCC--CcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcCC
Confidence 46899995 6999999999999875321 111100011122246789999999999999999999764
No 82
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=93.68 E-value=0.16 Score=55.17 Aligned_cols=67 Identities=16% Similarity=0.297 Sum_probs=45.4
Q ss_pred EEEEEEEe-CCcceeceEEEEEECCCCccc-CCCCCCCccc--ccceeeEEEeCCCceEEECccCCeeEEE
Q 001120 171 EIRGLVVA-QGNPILGVHIYLYSDDVGKVD-CPQGSGNALG--ERKALCHAVSDADGKFMFKSVPCGQYEL 237 (1150)
Q Consensus 171 ~i~G~V~~-~G~Pl~Ga~V~L~~~~~~~~~-~~~g~~~~~~--~g~~~~~a~TDa~G~f~f~~LppG~Y~v 237 (1150)
.|+|+|++ +|+||+||.|.++..+..-.. ........+. +........||++|+|+|..+.||.|.+
T Consensus 62 ~l~G~V~D~~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~ 132 (220)
T TIGR02422 62 IVHGRVLDEDGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPW 132 (220)
T ss_pred EEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 57899995 699999999999987532111 0000000001 1112578899999999999999999976
No 83
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=93.66 E-value=0.16 Score=54.36 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=45.0
Q ss_pred EEEEEEEe-CCcceeceEEEEEECCCCcccCCCCCC--C-cccccceeeEEEeCCCceEEECccCCeeEEE
Q 001120 171 EIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSG--N-ALGERKALCHAVSDADGKFMFKSVPCGQYEL 237 (1150)
Q Consensus 171 ~i~G~V~~-~G~Pl~Ga~V~L~~~~~~~~~~~~g~~--~-~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v 237 (1150)
.+.|+|++ +|+||+||.|.++-.+..-....+... . ............||++|+|+|..+.||.|..
T Consensus 41 ~l~G~V~D~~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 41 RLEGRVLDGDGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred EEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 57899995 699999999999987532111000000 0 0001112467899999999999999999875
No 84
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=93.56 E-value=0.14 Score=60.59 Aligned_cols=65 Identities=23% Similarity=0.414 Sum_probs=49.2
Q ss_pred ceEEEEEEeecCCccccCCCCCCcceEEEEEeCCCceEEEEEeCCCceEEEccccCccEEEEEEcCCceEEeeccEEEEE
Q 001120 75 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVEL 154 (1150)
Q Consensus 75 ~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~g~~~~~~~~~~V~v 154 (1150)
..|.|.|.+. +|.|+++|+|.+...+ ...+|.++|.|- .=|.||+|.|.++++||.... ..++|
T Consensus 329 ~GikG~V~d~--------~g~~i~~a~i~v~g~~----~~v~t~~~Gdyw-Rll~pG~y~v~~~a~gy~~~~---~~~~v 392 (405)
T cd03869 329 RGIKGVVRDK--------TGKGIPNAIISVEGIN----HDIRTASDGDYW-RLLNPGEYRVTAHAEGYTSST---KNCEV 392 (405)
T ss_pred cCceEEEECC--------CCCcCCCcEEEEecCc----cceeeCCCCceE-EecCCceEEEEEEecCCCccc---EEEEE
Confidence 3589999876 4699999999996543 235567889886 448999999999999997652 34555
Q ss_pred c
Q 001120 155 G 155 (1150)
Q Consensus 155 ~ 155 (1150)
.
T Consensus 393 ~ 393 (405)
T cd03869 393 G 393 (405)
T ss_pred c
Confidence 4
No 85
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=93.36 E-value=35 Score=44.60 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=30.7
Q ss_pred eEEEEeCCCceEE--eccCCCCceEEEEEeCCCeEEeeeccceeEEeeeeeEEEEEEec
Q 001120 760 ALETSTGADGSFI--GGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSK 816 (1150)
Q Consensus 760 ~~~~~Td~~G~f~--~gpL~~~~~y~v~a~k~gy~l~~~~~~~f~~~kl~~i~v~v~~~ 816 (1150)
-.++.+-.+|.|+ |-|=.++ .|+|.....+=+.... + |++..++.-..+.+..
T Consensus 898 ~aei~~~~~~~y~vrFtP~e~G-~~tl~V~y~~~~vegs-p--ftvgs~~e~~ahkvra 952 (1113)
T KOG0518|consen 898 EAEIVDLGQGTYQVRFTPKEPG-NHTLSVKYKDQHVEGS-P--FTVGSLGEGGAHKVRA 952 (1113)
T ss_pred ccEEEECCCceEEEEecCCCCC-ceEEEEEecCccCCCC-c--eeeecccccccceeec
Confidence 4677888888886 4465554 7777776544444322 2 5555555544555443
No 86
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=93.22 E-value=0.15 Score=57.32 Aligned_cols=55 Identities=24% Similarity=0.465 Sum_probs=44.2
Q ss_pred ceEEEEEEeecCCccccCCCCCCcceEEEEEeCC--C------------ceEEEEEeCCCceEEEccccCccEEEEE
Q 001120 75 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G------------DLISSVITSSEGSYLFKNIIPGKYKLRA 137 (1150)
Q Consensus 75 ~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~--g------------~~i~~ttTd~~G~f~f~~L~pG~Y~l~a 137 (1150)
..+.|+|.+. +|+|++||.|++...+ | ..-....||++|+|+|.-+.||.|-+-.
T Consensus 121 l~v~G~V~D~--------~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypip~ 189 (277)
T cd03461 121 CFVHGRVTDT--------DGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPIPT 189 (277)
T ss_pred EEEEEEEEcC--------CCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCCCC
Confidence 3578999975 3699999999999654 4 1123678999999999999999998753
No 87
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=92.73 E-value=42 Score=43.88 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.1
Q ss_pred EeCCCceEEECccC--CccEEEEEEecc
Q 001120 303 ITDRDGYYKLDQVT--SNRYTIEAVKVH 328 (1150)
Q Consensus 303 ~TD~dG~f~l~~L~--pG~Ytv~~~~~~ 328 (1150)
.-+.||.+.+.-+| ||.|+|.+...+
T Consensus 625 ~dn~Dgt~~vsy~P~vpG~y~i~V~~~~ 652 (1113)
T KOG0518|consen 625 YDNKDGTCSVSYTPTVPGVYKIEVKFGD 652 (1113)
T ss_pred EeCCCCcEEeccCCCCCceEEEEEEECC
Confidence 56789999999887 599999998754
No 88
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=92.26 E-value=0.25 Score=48.14 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=41.8
Q ss_pred EEEEEEeC-CCccccCeEEEE---cc---eee--eEeCCCceEEE-----CccCCccEEEEEEeccc
Q 001120 277 VGGRVVDE-NDMGVEGVKILV---DG---HER--SITDRDGYYKL-----DQVTSNRYTIEAVKVHY 329 (1150)
Q Consensus 277 V~G~V~d~-~G~plaGA~V~l---~G---~~~--~~TD~dG~f~l-----~~L~pG~Ytv~~~~~~y 329 (1150)
|+=.|+|. .|+|.+|+.|.| ++ +.+ +.||+||+..- +.+.+|.|+|+.....|
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Y 69 (112)
T cd05822 3 LSTHVLDTATGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAY 69 (112)
T ss_pred ceeEEEeCCCCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhh
Confidence 34468886 899999999999 22 122 69999999853 45789999999988887
No 89
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=91.98 E-value=0.26 Score=48.04 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=38.8
Q ss_pred EEEEEEeC-CCccccCeEEEE---c--cee--e--eEeCCCceEE-----ECccCCccEEEEEEeccc
Q 001120 277 VGGRVVDE-NDMGVEGVKILV---D--GHE--R--SITDRDGYYK-----LDQVTSNRYTIEAVKVHY 329 (1150)
Q Consensus 277 V~G~V~d~-~G~plaGA~V~l---~--G~~--~--~~TD~dG~f~-----l~~L~pG~Ytv~~~~~~y 329 (1150)
|+=.|+|. .|+|.+|+.|.| + +.. + ++||+||+.. -+.+.+|.|+|+.....|
T Consensus 3 iStHVLDt~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Y 70 (112)
T PF00576_consen 3 ISTHVLDTTTGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTGDY 70 (112)
T ss_dssp EEEEEEETTTTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHHHH
T ss_pred cEEEEeeCCCCCCccCCEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHHHh
Confidence 44578887 899999999999 2 222 2 6999999993 346789999999988776
No 90
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=91.81 E-value=1.1 Score=43.34 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=46.5
Q ss_pred ceEEEEEEeecCCccccCCCCCCcceEEEEEeCCC----ceEEEEEeCCCceEEEc----cccCccEEEEEEcCCc
Q 001120 75 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG----DLISSVITSSEGSYLFK----NIIPGKYKLRASHPNL 142 (1150)
Q Consensus 75 ~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g----~~i~~ttTd~~G~f~f~----~L~pG~Y~l~a~~~g~ 142 (1150)
-.|+-+|++.. .|.|.+||+|.|....+ +.+.+..|++||+-..- .|.||.|+++.....|
T Consensus 21 ~~itahVLd~s-------~GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT~~Y 89 (132)
T KOG3006|consen 21 PPITAHVLDIS-------RGSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDTEPY 89 (132)
T ss_pred CCcEeEEeecc-------cCCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEecccc
Confidence 45677887763 37999999999875443 56889999999997632 3689999999865555
No 91
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=90.81 E-value=0.98 Score=43.10 Aligned_cols=62 Identities=27% Similarity=0.284 Sum_probs=39.8
Q ss_pred eEEEEEEeecCCccccCCCCCCcceEEEE--EeCCCceEE---EEEeCCCceEEEc--cccCccEEEEEEcCCceEE
Q 001120 76 TLLGRVVGAIGGESCLDKGGGPSNVNVEL--LSHSGDLIS---SVITSSEGSYLFK--NIIPGKYKLRASHPNLSVE 145 (1150)
Q Consensus 76 ~IsG~V~~~~G~~s~~~~g~plaGv~V~L--~~~~g~~i~---~ttTd~~G~f~f~--~L~pG~Y~l~a~~~g~~~~ 145 (1150)
.+.-+|.+. +|.|++|+.|.+ ....+.... ..+||++|.+.+. .-.+|.|.|.++-.+....
T Consensus 26 tltatV~D~--------~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~~~~ 94 (100)
T PF02369_consen 26 TLTATVTDA--------NGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGGSTS 94 (100)
T ss_dssp EEEEEEEET--------TSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTEEEE
T ss_pred EEEEEEEcC--------CCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCccee
Confidence 456677775 479999999999 343444322 4789999998765 4477899999987766543
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=90.55 E-value=1.1e+02 Score=44.55 Aligned_cols=106 Identities=10% Similarity=0.043 Sum_probs=56.8
Q ss_pred EcCeeEEEEEEeecCCCCCceeeeCceEEEEEcCcccceEEEEeeeEEEEEEEeccCCCCceEEEEEEeCCccccCCcce
Q 001120 397 VPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKK 476 (1150)
Q Consensus 397 L~pG~Y~l~~~~~~~~~~~G~~~~p~~~~V~V~~p~~~I~F~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~~~~~~~~ 476 (1150)
-.||.|.|.+++..+- | ....+..|.|..|+.++.|+.....-. .....+..+.++..-.+ +...
T Consensus 1751 ~~~G~y~VtVta~N~v---s--s~~~s~~V~VqepV~GL~i~~~~~~~~------~~~~ag~~v~F~a~vst----GsnV 1815 (2740)
T TIGR00864 1751 PSAGLHLVTMKAFNEL---G--SANASEEVDVQEPISGLKIRAADAGEQ------NFFAADSSVCFQGELAT----GTNV 1815 (2740)
T ss_pred cCCceEEEEEEEEccc---c--ccceeEEEEEEeccccceEecCCCCcc------cceecCcEEEEEEEccC----CCee
Confidence 5689999999986432 2 122356666667777776653211000 00001334444433222 1233
Q ss_pred eEEEe--------cCCCcEEEcccCCccEEEEEEeecccccccCCCeeEEceEEEEEEe
Q 001120 477 TVSLT--------DDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVG 527 (1150)
Q Consensus 477 ~~~~T--------d~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~c~~~~~~~v~V~ 527 (1150)
.+.++ ..+-.++|.. ||.|.|++... + ..+|...+..++|+
T Consensus 1816 sw~W~f~~g~s~~gk~v~~Tf~~--aG~ytV~L~As-------N-~vs~~~~s~~~~VQ 1864 (2740)
T TIGR00864 1816 SWCWAIDGGSSKMGKHACMTFPD--AGTFAIRLNAS-------N-AVSGKSASREFFAE 1864 (2740)
T ss_pred EEEEEeCCCCccccceeEEecCC--CeEEEEEEEEE-------c-ccCcceeeeeEEEE
Confidence 44443 1222367766 99999999864 2 34566666566555
No 93
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=90.47 E-value=0.67 Score=45.66 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=41.2
Q ss_pred EEEEEEe--CCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEE--E--CccCCeeEEEEEE
Q 001120 172 IRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFM--F--KSVPCGQYELVPH 240 (1150)
Q Consensus 172 i~G~V~~--~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~--f--~~LppG~Y~v~~~ 240 (1150)
|+=.|++ .|.|.+|+.|.|+..+. ......+...+||+|||.. + ..+.+|.|+|++.
T Consensus 9 ittHVLDt~~G~PAaGV~V~L~~~~~------------~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~ 71 (121)
T cd05821 9 LMVKVLDAVRGSPAANVAVKVFKKTA------------DGSWEPFASGKTTETGEIHGLTTDEQFTEGVYKVEFD 71 (121)
T ss_pred cEEEEEECCCCccCCCCEEEEEEecC------------CCceEEEEEEEECCCCCCCCccCccccCCeeEEEEEe
Confidence 3445664 59999999999987520 0112357899999999995 2 2456899999985
No 94
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=90.19 E-value=0.53 Score=45.81 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=41.5
Q ss_pred EEEEEEeC-CCccccCeEEEE---cc--e--ee--eEeCCCceEEE----CccCCccEEEEEEeccc
Q 001120 277 VGGRVVDE-NDMGVEGVKILV---DG--H--ER--SITDRDGYYKL----DQVTSNRYTIEAVKVHY 329 (1150)
Q Consensus 277 V~G~V~d~-~G~plaGA~V~l---~G--~--~~--~~TD~dG~f~l----~~L~pG~Ytv~~~~~~y 329 (1150)
|+=.|+|. .|.|-+|+.|.| ++ . .+ ++||+||+..- +.+.+|.|+|+.....|
T Consensus 3 lStHVLDt~~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~~Y 69 (113)
T cd05469 3 LMVKVLDAVRGSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITEEEFXAGVYRVEFDTKSY 69 (113)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCccccccccceEEEEEEehHHh
Confidence 44478887 899999999999 32 2 22 58999999852 45788999999988777
No 95
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=90.04 E-value=0.46 Score=43.39 Aligned_cols=36 Identities=31% Similarity=0.589 Sum_probs=31.9
Q ss_pred CCCccCCcEEEEEeCC----CceeEEEeeCCCceEEecCC
Q 001120 905 SGQPKDGVSVEARSES----KGYYEETVTDTSGSYRLRGL 940 (1150)
Q Consensus 905 ~g~p~~gv~v~~~~~~----~~~~~~~~Td~~G~~~i~gL 940 (1150)
+|+|.+++.|++...+ .....+++||++|+|.|.|=
T Consensus 7 ~~~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~ 46 (80)
T PF01060_consen 7 GGKPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGS 46 (80)
T ss_pred CCccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEE
Confidence 6899999999998754 56888999999999999986
No 96
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=90.03 E-value=1.1 Score=42.67 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=38.2
Q ss_pred eEEEEEEEeCCCccccCeEEEE----cc-ee-----eeEeCCCceEEE--CccCCccEEEEEEeccc
Q 001120 275 FSVGGRVVDENDMGVEGVKILV----DG-HE-----RSITDRDGYYKL--DQVTSNRYTIEAVKVHY 329 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l----~G-~~-----~~~TD~dG~f~l--~~L~pG~Ytv~~~~~~y 329 (1150)
..+.-+|.|.+|+||+|..|.+ ++ .. .++||++|.+.+ ..-.+|.|+|++...+.
T Consensus 25 ~tltatV~D~~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~ 91 (100)
T PF02369_consen 25 NTLTATVTDANGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGG 91 (100)
T ss_dssp EEEEEEEEETTSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTE
T ss_pred EEEEEEEEcCCCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCc
Confidence 4567799999999999999998 22 11 258999998655 44578999999988763
No 97
>smart00095 TR_THY Transthyretin.
Probab=89.51 E-value=0.91 Score=44.73 Aligned_cols=57 Identities=14% Similarity=0.289 Sum_probs=41.2
Q ss_pred EEEEEEe--CCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEE--E--CccCCeeEEEEEE
Q 001120 172 IRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFM--F--KSVPCGQYELVPH 240 (1150)
Q Consensus 172 i~G~V~~--~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~--f--~~LppG~Y~v~~~ 240 (1150)
|+=.|++ .|.|.+|+.|.|+..+. ......+.+.+||+|||.. + ..+.+|.|+|++.
T Consensus 6 lTtHVLDt~~G~PAagv~V~L~~~~~------------~~~w~~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~ 68 (121)
T smart00095 6 LMVKVLDAVRGSPAVNVAVKVFKKTE------------EGTWEPFASGKTNESGEIHELTTDEKFVEGLYKVEFD 68 (121)
T ss_pred eEEEEEECCCCccCCCCEEEEEEeCC------------CCceEEEEEEecCCCccccCccCcccccceEEEEEEe
Confidence 3445664 59999999999987520 0112357899999999995 2 3467899999984
No 98
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=89.28 E-value=1 Score=48.02 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=44.2
Q ss_pred EEEEEEEe--CCcceeceEEEEEECCCCcccCCCCCCC-c-----ccccc-eeeEEEeCCCceEEECccCCeeEEE
Q 001120 171 EIRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGN-A-----LGERK-ALCHAVSDADGKFMFKSVPCGQYEL 237 (1150)
Q Consensus 171 ~i~G~V~~--~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~-~-----~~~g~-~~~~a~TDa~G~f~f~~LppG~Y~v 237 (1150)
.+.|+|.+ .++||+||.|.++..+.. ++=.+... . +.+.. ......||++|+|+|..+-||-|.-
T Consensus 28 ~l~g~V~D~~~c~Pv~~a~VdiWh~da~--G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~g 101 (188)
T cd03457 28 TLDLQVVDVATCCPPPNAAVDIWHCDAT--GVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYPG 101 (188)
T ss_pred EEEEEEEeCCCCccCCCeEEEEecCCCC--CCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCCC
Confidence 46889986 379999999999986532 11111100 0 01111 3567899999999999999999853
No 99
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=88.88 E-value=30 Score=36.93 Aligned_cols=122 Identities=18% Similarity=0.376 Sum_probs=70.1
Q ss_pred CCCCcceEEEEEeCCCceEE-EEEeCCCc-eEEEcccc----Cc---cEEEEEEc-CCceEEeeccEEEEEcccceeeee
Q 001120 94 GGGPSNVNVELLSHSGDLIS-SVITSSEG-SYLFKNII----PG---KYKLRASH-PNLSVEVRGSTEVELGFENGEVDD 163 (1150)
Q Consensus 94 g~plaGv~V~L~~~~g~~i~-~ttTd~~G-~f~f~~L~----pG---~Y~l~a~~-~g~~~~~~~~~~V~v~~~~~~~~~ 163 (1150)
+..+.-++|.|++.+..... -..+.+++ .|+|.+|| -| .|.|.+.. ++|...+.+. .++ +
T Consensus 19 ~~RP~sI~v~L~~ng~~~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V~~Y~~~v~g~-tIT---------N 88 (187)
T cd00222 19 KKRPAKISVQLLANGEKYVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQVPDYETPIIGE-TIT---------N 88 (187)
T ss_pred CCCCCEEEEEEEeCCeeeeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecCCCcEEEeccc-EEE---------E
Confidence 55678899999864322122 23455555 79999998 46 69998855 7887653322 121 1
Q ss_pred eeee-cCcEEEEE-EEeC---CcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEe-CCCceEEECccCCe----
Q 001120 164 IFFA-PGYEIRGL-VVAQ---GNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVS-DADGKFMFKSVPCG---- 233 (1150)
Q Consensus 164 ~l~i-~g~~i~G~-V~~~---G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~T-Da~G~f~f~~LppG---- 233 (1150)
.... .-.++++. +..+ |..-.-++|.|+..... . + .....+ +.+=.|+|.+||..
T Consensus 89 t~~~~~~t~i~v~K~W~d~~~~~rP~sI~V~L~adG~~-~------------~--~~~~l~~~n~W~~tf~~Lp~y~~Gk 153 (187)
T cd00222 89 KYINKETTSFSGKKIWKNDTAGQRPEEIQVQLLQDGQA-T------------G--KTKIVTKSNDWTYTFKDLPKYDTGN 153 (187)
T ss_pred eecCCceEEEEEEEEEcCCCCCCCCceEEEEEEeCCEE-c------------c--eEEEeecCCCcEEEecCCccccCCC
Confidence 1111 12345554 3433 33335689999986320 0 0 111223 34578999999976
Q ss_pred --eEEEEEE
Q 001120 234 --QYELVPH 240 (1150)
Q Consensus 234 --~Y~v~~~ 240 (1150)
.|+|.+.
T Consensus 154 ~i~YtV~E~ 162 (187)
T cd00222 154 EYKYSVEEV 162 (187)
T ss_pred EEeEEEEEe
Confidence 5888884
No 100
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=88.61 E-value=14 Score=51.47 Aligned_cols=169 Identities=18% Similarity=0.244 Sum_probs=106.3
Q ss_pred EEEEEEecCCCCCcccceEEEEeCCCc-cccceeecCCceEEEee-cCCcceEEeeccc-ccccC--------CCceeEE
Q 001120 809 ISVRIYSKDDAGEPIPSVLLSLSGDDG-YRNNSVSWAGGSFHFDN-LFPGNFYLRPLLK-EYAFS--------PPAQAIE 877 (1150)
Q Consensus 809 i~v~v~~~~~~~~pl~gvllslsg~~~-~r~n~~t~~~G~~~f~~-L~PG~Y~~~~~~k-ey~~~--------p~~~~i~ 877 (1150)
+.|.+..- .+|+|.+||-+++.+.++ ...+..||++|+..|.+ ..|..|.+..-.. +|.+. =+..-|+
T Consensus 307 l~v~v~sl-~sg~P~~g~~v~~~~~ngevl~~~~tds~G~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~d~s~f~V~ 385 (1621)
T COG2373 307 LDVFVQSL-SSGKPVPGVEVSVLAGNGEVLVSGTTDSQGHAKFSNAKKPAALLLARKEDGDFLGLDLTGGVFDLSDFDVE 385 (1621)
T ss_pred EEEEEEec-cCCCCCCCcEEEEEecCCcEEeeeEEccccceecccccCCceEEEEecCCCceEEEEcCCCcccccccccc
Confidence 55666555 459999999999998877 78999999999999998 5566665543211 11111 0111111
Q ss_pred --ecCCceEEEEEEEEeeeE------eEEEeeEcCCCC-ccCCcEEEEE--eCCC--ceeEEEeeCCCceEEecCCCCCc
Q 001120 878 --LGSGESREVIFQATRVAY------SATGTITLLSGQ-PKDGVSVEAR--SESK--GYYEETVTDTSGSYRLRGLHPDT 944 (1150)
Q Consensus 878 --v~~g~~~~v~~~~~r~~~------s~~G~v~~~~g~-p~~gv~v~~~--~~~~--~~~~~~~Td~~G~~~i~gL~Pg~ 944 (1150)
..+|....+-+...|--| .+.+..+..++. ++.++-+++. +.++ ......++|++|.++++=-+|-.
T Consensus 386 g~~~~~~~~k~y~ftDRglYRpGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~n 465 (1621)
T COG2373 386 GRAAPGYGLKVYLFTDRGLYRPGETVHVNALLRDFDGKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPEN 465 (1621)
T ss_pred ceecCCCceEEEEecCcccCCCCceeeeeeeehhhcccccccCCCeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCC
Confidence 123333333333333322 235555667777 7888877775 3443 35666778999999987555433
Q ss_pred ----EEEEEEEEecC--C--CCcceeccCCceEEEEecCccc
Q 001120 945 ----TYVIKVVKKDG--F--GSTKIERASPESVTVKVGSGDI 978 (1150)
Q Consensus 945 ----~y~i~~~~~~~--~--~~~~i~~~~p~~~~v~v~~~d~ 978 (1150)
.|++++...+. . ...+++-..|.++.|.+.....
T Consensus 466 a~tG~w~l~~~~~~~~~~~s~~f~V~df~p~r~~i~l~~~k~ 507 (1621)
T COG2373 466 ALTGGYTLELYTGGKSAVISMSFRVEDFIPDRFKINLTLDKT 507 (1621)
T ss_pred CCcceEEEEEEeCCccceeeeeEEhhHhCCceEEEecccccc
Confidence 69999997542 1 3566777889999998754433
No 101
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=88.38 E-value=1.1 Score=40.92 Aligned_cols=48 Identities=25% Similarity=0.413 Sum_probs=36.6
Q ss_pred EEEEeCCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECccCCe
Q 001120 174 GLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCG 233 (1150)
Q Consensus 174 G~V~~~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~LppG 233 (1150)
|++.=.|+|++++.|.|+..+... ....+..+.||++|+|.+.+-...
T Consensus 2 G~L~C~~~P~~~~~V~L~e~d~~~------------~Ddll~~~~Td~~G~F~l~G~~~e 49 (80)
T PF01060_consen 2 GQLMCGGKPAKNVKVKLWEDDYFD------------PDDLLDETKTDSDGNFELSGSTNE 49 (80)
T ss_pred eEEEeCCccCCCCEEEEEECCCCC------------CCceeEEEEECCCceEEEEEEccC
Confidence 677777999999999999986210 112578999999999999864444
No 102
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=88.09 E-value=1.5 Score=38.72 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=48.4
Q ss_pred ccceEEEEeCCCccccceeecCCceEEEeecCCcceEEeecccccccCCCceeEEecCCceEEEEEEEEee
Q 001120 823 IPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRV 893 (1150)
Q Consensus 823 l~gvllslsg~~~~r~n~~t~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~g~~~~v~~~~~r~ 893 (1150)
-+|+.+.|.|. +.. ..-+.+..|.||.|.|+.-+..|. +..+.|+|++|++..|.+..++.
T Consensus 10 p~gA~V~vdg~--~~G------~tp~~~~~l~~G~~~v~v~~~Gy~--~~~~~v~v~~~~~~~v~~~L~~~ 70 (71)
T PF08308_consen 10 PSGAEVYVDGK--YIG------TTPLTLKDLPPGEHTVTVEKPGYE--PYTKTVTVKPGETTTVNVTLEPQ 70 (71)
T ss_pred CCCCEEEECCE--Eec------cCcceeeecCCccEEEEEEECCCe--eEEEEEEECCCCEEEEEEEEEEC
Confidence 34677777774 222 223477889999999999999997 77899999999999999988764
No 103
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=88.01 E-value=1.7 Score=40.58 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=41.9
Q ss_pred EEEEEEEeCCCccccCeEEEE--cce-------eeeEeCCCceEEE--CccCCccEEEEEEecccc
Q 001120 276 SVGGRVVDENDMGVEGVKILV--DGH-------ERSITDRDGYYKL--DQVTSNRYTIEAVKVHYK 330 (1150)
Q Consensus 276 sV~G~V~d~~G~plaGA~V~l--~G~-------~~~~TD~dG~f~l--~~L~pG~Ytv~~~~~~y~ 330 (1150)
.|.-+|+|.+|.|++++.|.+ +|. ....||++|+..+ ..-.+|.|+|+++.+++.
T Consensus 21 ~i~v~v~D~~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~~ 86 (92)
T smart00634 21 TLTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENGS 86 (92)
T ss_pred EEEEEEECCCCCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCCc
Confidence 466689999999999998877 332 2258999998665 333679999999988753
No 104
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=87.97 E-value=1 Score=43.57 Aligned_cols=54 Identities=20% Similarity=0.380 Sum_probs=42.7
Q ss_pred EEEEEEEeC-CCccccCeEEEE---ccee---e--eEeCCCceEEE-----CccCCccEEEEEEeccc
Q 001120 276 SVGGRVVDE-NDMGVEGVKILV---DGHE---R--SITDRDGYYKL-----DQVTSNRYTIEAVKVHY 329 (1150)
Q Consensus 276 sV~G~V~d~-~G~plaGA~V~l---~G~~---~--~~TD~dG~f~l-----~~L~pG~Ytv~~~~~~y 329 (1150)
.++--|+|. .|+|-+|++|.| +|.. + +.||+||+... +.+.+|.|.+++....|
T Consensus 10 ~LTTHVLDta~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdY 77 (124)
T COG2351 10 RLTTHVLDTASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDY 77 (124)
T ss_pred eeeeeeeecccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchh
Confidence 456678886 799999999998 4431 2 58999999873 45678999999988887
No 105
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=87.62 E-value=0.83 Score=48.72 Aligned_cols=53 Identities=30% Similarity=0.352 Sum_probs=40.7
Q ss_pred eEEEEEEeecCCccccCCCCCCcceEEEEEeCC--Cc-------------------eEEEEEeCCCceEEEccccCccEE
Q 001120 76 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--GD-------------------LISSVITSSEGSYLFKNIIPGKYK 134 (1150)
Q Consensus 76 ~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~--g~-------------------~i~~ttTd~~G~f~f~~L~pG~Y~ 134 (1150)
.+.|+|.+.. ++.|++||.|.+...+ |. .-....||++|+|+|.-+.||.|.
T Consensus 28 ~l~g~V~D~~-------~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~ 100 (188)
T cd03457 28 TLDLQVVDVA-------TCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYP 100 (188)
T ss_pred EEEEEEEeCC-------CCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCC
Confidence 4789998741 3589999999998654 30 112467999999999999999996
Q ss_pred E
Q 001120 135 L 135 (1150)
Q Consensus 135 l 135 (1150)
-
T Consensus 101 g 101 (188)
T cd03457 101 G 101 (188)
T ss_pred C
Confidence 3
No 106
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=87.04 E-value=1.9 Score=47.36 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=46.1
Q ss_pred CceEEEEEEeecCCccccCCCCCCcceEEEEE-------e---CCC---ceEEEEEeCCCceEEEccccCccEEEEEEcC
Q 001120 74 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELL-------S---HSG---DLISSVITSSEGSYLFKNIIPGKYKLRASHP 140 (1150)
Q Consensus 74 g~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~-------~---~~g---~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~ 140 (1150)
|-.+.|+|+.. |.|++|++|.+. + ..+ .......||++|.|+|-.+..|.+.+.+.|.
T Consensus 171 ge~f~~~vl~~---------GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r~G~W~~~~~~~ 241 (264)
T COG5266 171 GEVFRGKVLDN---------GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLRAGVWGFAVEHK 241 (264)
T ss_pred CCeEEEEEEEC---------CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEccCceEEEEeecc
Confidence 45577888874 699999999987 1 122 2235678999999999999999999998775
Q ss_pred C
Q 001120 141 N 141 (1150)
Q Consensus 141 g 141 (1150)
+
T Consensus 242 ~ 242 (264)
T COG5266 242 T 242 (264)
T ss_pred C
Confidence 4
No 107
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=85.72 E-value=3.1 Score=45.82 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=49.5
Q ss_pred CcEEEEEEEeCCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECccCCeeEEEEEEEecC
Q 001120 169 GYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGE 244 (1150)
Q Consensus 169 g~~i~G~V~~~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v~~~~~~~ 244 (1150)
|-.+.|+|+.+|+||+||+|.+.-..-...+ +...............||++|+|.|--+..|-+.+.+.+.++
T Consensus 171 ge~f~~~vl~~GkPv~nA~V~v~~~n~~~~d---~~a~~~~~ek~~~~~~TD~kG~~~fip~r~G~W~~~~~~~~~ 243 (264)
T COG5266 171 GEVFRGKVLDNGKPVPNATVEVEFDNIDTKD---NRAKTGNTEKTALVQFTDDKGEVSFIPLRAGVWGFAVEHKTD 243 (264)
T ss_pred CCeEEEEEEECCccCCCcEEEEEEecccccc---cccccCCCCCcceEEEcCCCceEEEEEccCceEEEEeeccCC
Confidence 4567899999999999999998732200000 001111112234678899999999999999999998865543
No 108
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=84.89 E-value=3.1 Score=40.25 Aligned_cols=61 Identities=26% Similarity=0.248 Sum_probs=45.8
Q ss_pred ceEEEEEEeecCCccccCCCCCCcceEEEEEe--CCC-ce-----EEEEEeCCCceEEEccccCccEEEEEEcCCce
Q 001120 75 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLS--HSG-DL-----ISSVITSSEGSYLFKNIIPGKYKLRASHPNLS 143 (1150)
Q Consensus 75 ~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~--~~g-~~-----i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~g~~ 143 (1150)
..|+=.|.++ .++|+.|++|+|.. .+. ++ +.-..||.+|.+.+.+..-|+|.+.....+-.
T Consensus 42 ~pVT~hVen~--------e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y~v~l~n~e~~ 110 (131)
T PF10794_consen 42 NPVTFHVENA--------EGQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKGKYIVFLPNGETQ 110 (131)
T ss_pred ccEEEEEecC--------CCCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcceEEEEEcCCCce
Confidence 3456667665 36999999999986 221 11 23478999999999999999999998766554
No 109
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=84.13 E-value=2.2 Score=36.86 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=25.0
Q ss_pred EEEecCCC-cEEEcccCCccEEEEEEeecccccccCCCeeEEceEEEEEE
Q 001120 478 VSLTDDSD-QFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDV 526 (1150)
Q Consensus 478 ~~~Td~~G-~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~c~~~~~~~v~V 526 (1150)
+....... .+.|.+|+||+|+|.+...+ ..+.|..+...+.|+|
T Consensus 21 W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~-----~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 21 WITLGSYSNSISYTNLPPGKYTLEVRAKD-----NNGKWSSDEKSLTITI 65 (66)
T ss_dssp EEEESSTS-EEEEES--SEEEEEEEEEEE-----TTS-B-SS-EEEEEEE
T ss_pred EEECCCCcEEEEEEeCCCEEEEEEEEEEC-----CCCCcCcccEEEEEEE
Confidence 33334445 99999999999999998651 1233443334555555
No 110
>PRK15235 outer membrane fimbrial usher protein SefC; Provisional
Probab=81.66 E-value=22 Score=46.64 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=84.3
Q ss_pred ceeecCCceEEEeecCCcceE---Eee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-Cc
Q 001120 839 NSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 912 (1150)
Q Consensus 839 n~~t~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv 912 (1150)
...||..|...+-+|.|=+.- |-+ +..+.+++-+.+.|.-.+|.-..+.|...+. ..+.=+++..+|+|+| |+
T Consensus 668 ~~~Td~~G~avvp~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~g-~~~ll~l~~~~G~~lPfGa 746 (814)
T PRK15235 668 GVRTDFRGYTISSYLTPYMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVG-TNALIRITRTNGKPLALGT 746 (814)
T ss_pred CCEECCCCeEEeCCCCCceeceEEecccCCCCCeEecccEEEEEecCCcEEEEEEEEeee-eEEEEEEECCCCCcCCCce
Confidence 357999999999999974433 433 3456888888888999999999999877654 3456678889999987 66
Q ss_pred EEEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 913 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 913 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
.|.+.+.++...+......+|.--|+||.|.....|+.
T Consensus 747 ~V~~~~~~g~~~~~g~Vg~~G~vyl~gl~~~~~L~v~w 784 (814)
T PRK15235 747 VLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIASW 784 (814)
T ss_pred EEEecCCCCceeeeEEEcCCCEEEEEcCCCCceEEEEE
Confidence 66665544433456899999999999999987666654
No 111
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=81.01 E-value=15 Score=40.29 Aligned_cols=86 Identities=17% Similarity=0.373 Sum_probs=48.1
Q ss_pred ccEEEeceEEEEEEEeC-CCccc----cCeEEEE--cc----eee-eEeCCCceEEECccCCccEEEEEEeccc----cc
Q 001120 268 EKFQVTGFSVGGRVVDE-NDMGV----EGVKILV--DG----HER-SITDRDGYYKLDQVTSNRYTIEAVKVHY----KF 331 (1150)
Q Consensus 268 ~~f~~~g~sV~G~V~d~-~G~pl----aGA~V~l--~G----~~~-~~TD~dG~f~l~~L~pG~Ytv~~~~~~y----~~ 331 (1150)
+++..+...++|+|+|. +|+|+ -|++++| .| ... .....||.|+=..|=+|+|.|......+ ..
T Consensus 15 DNYD~P~s~l~G~iiD~~tgE~i~~~~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~~~ 94 (222)
T PF12866_consen 15 DNYDEPDSTLTGRIIDVYTGEPIQTDIGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVVPV 94 (222)
T ss_dssp -------EEEEEEEEECCTTEE----STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSCCE
T ss_pred cCCcCCCceEEEEEEEeecCCeeeecCCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEEcCCCCcccCCC
Confidence 34666678899999995 66554 4888988 22 122 4788999997668999999999855442 22
Q ss_pred cceeeEEEcCCcceeeeEEEeee-EE
Q 001120 332 NKLKEYMVLPNMASIADIKAISY-DI 356 (1150)
Q Consensus 332 ~~~~~v~v~p~~~~i~dI~~~~~-~V 356 (1150)
++. .+.+. .....|+.+..| .|
T Consensus 95 dti-~v~i~--G~t~~d~eVtPY~~I 117 (222)
T PF12866_consen 95 DTI-EVDIK--GNTTQDFEVTPYLRI 117 (222)
T ss_dssp --E-EEEES--SCEEEEEEE-BSEEE
T ss_pred ccE-EEEec--CceEEeEEeeeeEEE
Confidence 332 34444 334567766665 44
No 112
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=80.11 E-value=4.5 Score=39.19 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=43.8
Q ss_pred EEEEEEEeCCCccccCeEEEE-c------------ceeeeEeCCCceEEECccCCccEEEEEEecc
Q 001120 276 SVGGRVVDENDMGVEGVKILV-D------------GHERSITDRDGYYKLDQVTSNRYTIEAVKVH 328 (1150)
Q Consensus 276 sV~G~V~d~~G~plaGA~V~l-~------------G~~~~~TD~dG~f~l~~L~pG~Ytv~~~~~~ 328 (1150)
.|+=.|.+.+|+|+.|++|+| . |..++.||.+|.+......-|+|.|-....+
T Consensus 43 pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y~v~l~n~e 108 (131)
T PF10794_consen 43 PVTFHVENAEGQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKGKYIVFLPNGE 108 (131)
T ss_pred cEEEEEecCCCCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcceEEEEEcCCC
Confidence 345578888999999999998 1 2334799999999999999999999887765
No 113
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=79.31 E-value=4.2 Score=35.11 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=17.8
Q ss_pred eCCCc-eEEECccCCeeEEEEEEEec
Q 001120 219 SDADG-KFMFKSVPCGQYELVPHYKG 243 (1150)
Q Consensus 219 TDa~G-~f~f~~LppG~Y~v~~~~~~ 243 (1150)
..... .+.|.+||||+|+|.+....
T Consensus 24 ~~~~~~~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 24 LGSYSNSISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp ESSTS-EEEEES--SEEEEEEEEEEE
T ss_pred CCCCcEEEEEEeCCCEEEEEEEEEEC
Confidence 34444 99999999999999986543
No 114
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=79.23 E-value=2.7 Score=39.73 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=29.2
Q ss_pred CCCCccCCcEEEEEeCC--C--ceeEEEeeCCCceEEec
Q 001120 904 LSGQPKDGVSVEARSES--K--GYYEETVTDTSGSYRLR 938 (1150)
Q Consensus 904 ~~g~p~~gv~v~~~~~~--~--~~~~~~~Td~~G~~~i~ 938 (1150)
....|++||.|.+.-.+ + ....+++||++|.|+|.
T Consensus 16 ~~~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~ 54 (97)
T PF01190_consen 16 RAAKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIE 54 (97)
T ss_pred ccCccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEE
Confidence 45679999999999554 2 47889999999999997
No 115
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=78.16 E-value=16 Score=35.58 Aligned_cols=91 Identities=20% Similarity=0.368 Sum_probs=63.5
Q ss_pred eeEEEEEEecCCCCCcccceEE---EEeCCCccc--cceeecCCceEEEe----ecCCcceEEeeccccc-------ccC
Q 001120 807 SQISVRIYSKDDAGEPIPSVLL---SLSGDDGYR--NNSVSWAGGSFHFD----NLFPGNFYLRPLLKEY-------AFS 870 (1150)
Q Consensus 807 ~~i~v~v~~~~~~~~pl~gvll---slsg~~~~r--~n~~t~~~G~~~f~----~L~PG~Y~~~~~~key-------~~~ 870 (1150)
..|..+|.|. ..|.|-.||.+ .+.+.+.+. ....|++||+..-. .|-||.|.|+-.-+-| .|-
T Consensus 21 ~~itahVLd~-s~GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT~~Y~~a~gv~sFy 99 (132)
T KOG3006|consen 21 PPITAHVLDI-SRGSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDTEPYYKALGVESFY 99 (132)
T ss_pred CCcEeEEeec-ccCCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEecccccccCCccccc
Confidence 5678888886 45999999865 455554432 23569999998743 3559999998766666 344
Q ss_pred C-CceeEEecCC-ceEEEEEEEEeeeEeEE
Q 001120 871 P-PAQAIELGSG-ESREVIFQATRVAYSAT 898 (1150)
Q Consensus 871 p-~~~~i~v~~g-~~~~v~~~~~r~~~s~~ 898 (1150)
| -+..++|.++ |.-+|-+...+-.||-|
T Consensus 100 pyvevvf~in~s~qhyhvpllLsPygySTy 129 (132)
T KOG3006|consen 100 PYVEVVFNINDSTQHYHVPLLLSPYGYSTY 129 (132)
T ss_pred ccEEEEEEeccCcceEEEeEEecccceeee
Confidence 4 3455889998 66677777777777653
No 116
>COG1470 Predicted membrane protein [Function unknown]
Probab=77.46 E-value=1.7e+02 Score=35.34 Aligned_cols=89 Identities=13% Similarity=0.317 Sum_probs=56.0
Q ss_pred ecCCCcEEEcccCCccEEEEEEeecccccccCCCeeEEceEEEEEEecCc--ccceeEEEeeeEEEEeeccceeEEEEec
Q 001120 481 TDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTND--VKGVEFVQKGYWLNVISTHDVDAYMTQQ 558 (1150)
Q Consensus 481 Td~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~c~~~~~~~v~V~~~~--~~~v~F~q~Gy~~~i~ssh~~~~~~~~~ 558 (1150)
++..|.-.+ ++-||+|.+.+.++ ..|+.....|.+.... ...+.+.+++|......+.++-+++++.
T Consensus 215 ts~~g~~~~-e~t~g~y~~~i~~~----------g~ye~~~~av~l~d~~t~dLkls~~~k~~~ftEl~~s~~~~~i~~~ 283 (513)
T COG1470 215 TSSKGNLEV-EITPGKYVVLIAKK----------GIYEKKKRAVKLNDGETKDLKLSVTEKKSYFTELNSSDIYLEISPS 283 (513)
T ss_pred eecccceeE-EecCcceEEEeccc----------cceecceEEEEcCCCcccceeEEEEeccceEEEeecccceeEEccC
Confidence 344444433 57899999988642 3467777777776443 4557888888888776666766666643
Q ss_pred CCCeeeEEEe-cc--ceeEEecCCc
Q 001120 559 DGSHVPLKVK-KG--SQHICVESPG 580 (1150)
Q Consensus 559 ~~~~~~l~l~-kG--~~~~c~~~~G 580 (1150)
.-...+++|+ +| ....|++..|
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g 308 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSG 308 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEecc
Confidence 3334446663 44 4567776443
No 117
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=75.07 E-value=9.1 Score=35.73 Aligned_cols=63 Identities=10% Similarity=0.179 Sum_probs=42.9
Q ss_pred eeeeeEEEEEEecCCCCCcccceEEE--EeCCC--ccc-cceeecCCceEEEe--ecCCcceEEeecccccc
Q 001120 804 QKLSQISVRIYSKDDAGEPIPSVLLS--LSGDD--GYR-NNSVSWAGGSFHFD--NLFPGNFYLRPLLKEYA 868 (1150)
Q Consensus 804 ~kl~~i~v~v~~~~~~~~pl~gvlls--lsg~~--~~r-~n~~t~~~G~~~f~--~L~PG~Y~~~~~~key~ 868 (1150)
..+..|.+++.|+. |.|+++..+. ++++. .+. ....||.+|...+. +-.+|.|.+++....+.
T Consensus 17 ~d~~~i~v~v~D~~--Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~~ 86 (92)
T smart00634 17 SDAITLTATVTDAN--GNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENGS 86 (92)
T ss_pred cccEEEEEEEECCC--CCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCCc
Confidence 35678899999976 8999996654 55542 111 23568999976554 55688888887665543
No 118
>PRK15294 putative fimbrial outer membrane usher protein SthC; Provisional
Probab=74.47 E-value=36 Score=44.90 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=82.9
Q ss_pred eeecCCceEEEeecCCcc---eEEee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-CcE
Q 001120 840 SVSWAGGSFHFDNLFPGN---FYLRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 913 (1150)
Q Consensus 840 ~~t~~~G~~~f~~L~PG~---Y~~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv~ 913 (1150)
..||..|...+-+|.|=+ ..|-+ +..+-+++-+.+.|.-.+|.-..+.|..++.. .+.=+++..+|+|+| |+.
T Consensus 701 ~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g~-~~l~~l~~~~G~~lPfGa~ 779 (845)
T PRK15294 701 VDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIGY-KALMVLTRINNLPVPFGAT 779 (845)
T ss_pred CEECCCCeEEeCCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEEEEEEEeeee-EEEEEEECCCCCcCCceEE
Confidence 589999999999999733 33433 34568888888889999999999999888766 667778888999986 666
Q ss_pred EEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 914 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 914 v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
|...+.++ .+......+|.--|+||.|....+|+.
T Consensus 780 V~~~~~~g--~~~g~Vg~~G~vyl~gl~~~~~L~v~w 814 (845)
T PRK15294 780 VSSLTKPD--NHSSFVGDAGQAWLTGLEKQGRLLVKW 814 (845)
T ss_pred EEccCCCC--ceEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 65433222 255789999999999999887666654
No 119
>KOG4802 consensus Adhesion-type protein [Extracellular structures]
Probab=73.51 E-value=16 Score=42.68 Aligned_cols=114 Identities=15% Similarity=0.273 Sum_probs=58.2
Q ss_pred eecCCceEEEeecCCcceE-Eeeccc-cccc---CCCceeEEecCC-----ceEEEEEEEEeeeEeEEEeeEc---CCCC
Q 001120 841 VSWAGGSFHFDNLFPGNFY-LRPLLK-EYAF---SPPAQAIELGSG-----ESREVIFQATRVAYSATGTITL---LSGQ 907 (1150)
Q Consensus 841 ~t~~~G~~~f~~L~PG~Y~-~~~~~k-ey~~---~p~~~~i~v~~g-----~~~~v~~~~~r~~~s~~G~v~~---~~g~ 907 (1150)
.|.+.-.+.|.+++||++| ||-... -|-| .-+++.+-+-.. ....+.+.|.....+..=+|-+ .+.-
T Consensus 204 ~t~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sdl 283 (516)
T KOG4802|consen 204 KTMEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSDL 283 (516)
T ss_pred ecCCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCCC
Confidence 3444448999999999988 564333 1211 122222211111 1134555553333333333332 2334
Q ss_pred ccCCcEEEEEeC-C-------CceeEEEeeCCCceEEecCCCCCcEEEEEEEEecCCC
Q 001120 908 PKDGVSVEARSE-S-------KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFG 957 (1150)
Q Consensus 908 p~~gv~v~~~~~-~-------~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~~~~~~~~ 957 (1150)
|++.-.|.-... + ....-+-.|+ +|.|.+|+|+|.|.|++.+..+.|
T Consensus 284 Pv~~Yki~Ws~~v~s~k~~m~tks~~~k~th---q~si~~L~Pns~Y~VevqAi~y~g 338 (516)
T KOG4802|consen 284 PVEKYKITWSLYVNSAKASMITKSSYVKDTH---QFSIKELLPNSSYYVEVQAISYLG 338 (516)
T ss_pred cceeeEEEeehhhhhhhhhcccccceeeccc---hhhhhhcCCCCeEEEEEEEEEecc
Confidence 555444432211 1 1111223344 667999999999999999876544
No 120
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=73.09 E-value=15 Score=32.46 Aligned_cols=50 Identities=36% Similarity=0.521 Sum_probs=36.5
Q ss_pred CCCccCCcEEEEEeCCCc--eeEEEeeCCCceEEecCCCCCcEEEEEEEEec
Q 001120 905 SGQPKDGVSVEARSESKG--YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 954 (1150)
Q Consensus 905 ~g~p~~gv~v~~~~~~~~--~~~~~~Td~~G~~~i~gL~Pg~~y~i~~~~~~ 954 (1150)
.+.++.+..|+....+.. .+........-.|.|.||.|++.|.+++.+..
T Consensus 26 ~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 26 GNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVN 77 (85)
T ss_dssp TSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEE
T ss_pred CCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEe
Confidence 355677788888765422 44444555555999999999999999999753
No 121
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Probab=71.59 E-value=30 Score=44.65 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=31.1
Q ss_pred eEEEEEEEeCCCccccCeEEEEcceeeeEeCCCceEEEC
Q 001120 275 FSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLD 313 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l~G~~~~~TD~dG~f~l~ 313 (1150)
+++-|++++++|.|+.+|.| +|..- ..||++|.|.++
T Consensus 786 ~~yiGr~~~~~G~~l~~a~I-lN~~~-~~td~~GgF~~d 822 (895)
T PRK15310 786 RLYVGRVLDKDGRPLLDAQP-LNYPF-LSLGPSGRFSLQ 822 (895)
T ss_pred EEEEEEEECCCCCCccccee-ecCcc-ceecCCCCEEEE
Confidence 45789999999999999977 55444 799999999993
No 122
>PRK15207 long polar fimbrial outer membrane usher protein LpfC; Provisional
Probab=71.55 E-value=64 Score=42.63 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=83.1
Q ss_pred eeecCCceEEEeecCCcceE---Eee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-CcE
Q 001120 840 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 913 (1150)
Q Consensus 840 ~~t~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv~ 913 (1150)
..||..|...+-+|.|=+.- |-+ +..+-+++-+.+.|...+|.-..+.|...+. ..+.=+|+..+|+|+| |+.
T Consensus 698 ~~Td~~G~AvVP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~v~F~~~~g-~~~ll~l~~~~G~~lP~Ga~ 776 (842)
T PRK15207 698 VEVDWMGNAVVPYLTPYRETEVSLRSDSLGQNVDLQEAFQKVVPTRGAIVRARFDTRVG-YRVLMSLKQANGNAVPFGAT 776 (842)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEEeee-eEEEEEEEcCCCCcCCccEE
Confidence 58999999999999985443 333 2346778888888999999999999877665 3456678889999998 888
Q ss_pred EEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 914 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 914 v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
|.+.+.++ ........+|.--|+||.+....+|+.
T Consensus 777 V~~~~~~~--~~~g~Vg~~G~vyl~gl~~~~~l~v~w 811 (842)
T PRK15207 777 ATLIDTTK--EASSIVGEEGQLYISGMPEEGELQVSW 811 (842)
T ss_pred EEecCCCC--ceEEEECCCCEEEEEcCCCCceEEEEE
Confidence 77665443 244788999999999999887665554
No 123
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=69.62 E-value=1.3e+02 Score=31.35 Aligned_cols=106 Identities=18% Similarity=0.276 Sum_probs=49.2
Q ss_pred EEEE-EcCeeEEEEE-EeecCCCCCceeeeC-ceEEEEEc--CcccceEEE---EeeeEEEEEEE----eccCCCCceEE
Q 001120 393 FCFE-VPPGEYRLSA-MAATPESSSGILFLP-PYADVVVK--SPLLNIEFS---QALVNVLGNVA----CKERCGPLVTV 460 (1150)
Q Consensus 393 f~f~-L~pG~Y~l~~-~~~~~~~~~G~~~~p-~~~~V~V~--~p~~~I~F~---q~~a~V~G~V~----~~~~~~~~~~V 460 (1150)
|-+. |+.|.|++.+ .+.+. .|-.... ....+.++ .|...|.+. ..+..+.|.+. +.+... ...+
T Consensus 7 fd~~~l~dG~Y~l~~~~a~D~---agN~~~~~~~~~~~iD~T~Ptisi~~~~~~~~g~~v~~~~~i~i~~tD~~~-~~~i 82 (158)
T PF13750_consen 7 FDLSTLPDGSYTLTVVTATDA---AGNTSTSTVSETFTIDNTPPTISISDGASVANGSTVYGLVNISINVTDNSD-DSKI 82 (158)
T ss_pred EEeCcCCCccEEEEEEEEEec---CCCEEEEEEeeEEEEcCCCCEEEEecCCccCCCccccceeeeEEEEEeCCC-CceE
Confidence 4445 9999999999 45432 2211111 12245553 566666222 13334444333 222222 2244
Q ss_pred EEEEeCCccccCCcceeEEE-ecCCCcEEEc------ccCCc-cEEEEEEee
Q 001120 461 TLMRLGQKHYDGTEKKTVSL-TDDSDQFLFR------DVLPG-KYRLEVKRT 504 (1150)
Q Consensus 461 tL~~~~~~~~~~~~~~~~~~-Td~~G~f~f~------~L~PG-~Y~v~~~~~ 504 (1150)
+.....++. ..+...+.+ ..++|.|.++ .|.+| .|+|++...
T Consensus 83 ~sv~l~Gg~--~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~ 132 (158)
T PF13750_consen 83 TSVSLTGGP--ASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSAT 132 (158)
T ss_pred EEEEEECCc--ccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEE
Confidence 433333321 012222222 2456677663 44445 588888754
No 124
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=69.37 E-value=19 Score=39.62 Aligned_cols=45 Identities=9% Similarity=0.210 Sum_probs=32.7
Q ss_pred CCCcceEEEEEeCCCceEEEEEe-CCCceEEEcc-------ccCccEEEEEEc
Q 001120 95 GGPSNVNVELLSHSGDLISSVIT-SSEGSYLFKN-------IIPGKYKLRASH 139 (1150)
Q Consensus 95 ~plaGv~V~L~~~~g~~i~~ttT-d~~G~f~f~~-------L~pG~Y~l~a~~ 139 (1150)
.+...++|++++.+|+++++..- -..+.|.+++ +++|.|++.+.+
T Consensus 121 ~~a~~v~v~I~D~~G~vV~t~~~~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A 173 (223)
T PRK12813 121 ADADKAELVVRDAAGAEVARETVPVGAGPVEWAGEDADGNPLPNGAYSFVVES 173 (223)
T ss_pred CCCceEEEEEEcCCCCEEEEEeeCCCceeEEeCCcCCCCCcCCCccEEEEEEE
Confidence 56778999999999988765432 2234577764 788999998754
No 125
>PRK15235 outer membrane fimbrial usher protein SefC; Provisional
Probab=68.53 E-value=35 Score=44.86 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=70.4
Q ss_pred EEEeCCCceEEeccCCC--CceEEEEEe--CCCeEEeeec----c-------ceeEEeeeeeEEEEEEecCCCCCccc-c
Q 001120 762 ETSTGADGSFIGGPLYD--DITYNVEAS--KPGYYLRQVG----P-------NSFSCQKLSQISVRIYSKDDAGEPIP-S 825 (1150)
Q Consensus 762 ~~~Td~~G~f~~gpL~~--~~~y~v~a~--k~gy~l~~~~----~-------~~f~~~kl~~i~v~v~~~~~~~~pl~-g 825 (1150)
.+.||.+|.-.+..|.+ .-.+.|... +....++.+. | ..|...+--.+.+++.+++ |+||| |
T Consensus 668 ~~~Td~~G~avvp~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~g~~~ll~l~~~~--G~~lPfG 745 (814)
T PRK15235 668 GVRTDFRGYTISSYLTPYMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTN--GKPLALG 745 (814)
T ss_pred CCEECCCCeEEeCCCCCceeceEEecccCCCCCeEecccEEEEEecCCcEEEEEEEEeeeeEEEEEEECCC--CCcCCCc
Confidence 36999999999988876 235555555 5566665432 1 3798888889999999986 89997 5
Q ss_pred eEEEEeCCCc-cccceeecCCceEEEeecCCc-ceEEe
Q 001120 826 VLLSLSGDDG-YRNNSVSWAGGSFHFDNLFPG-NFYLR 861 (1150)
Q Consensus 826 vllslsg~~~-~r~n~~t~~~G~~~f~~L~PG-~Y~~~ 861 (1150)
+.+.+.++++ +....+.+++|.+.+.+|.|. +..++
T Consensus 746 a~V~~~~~~g~~~~~g~Vg~~G~vyl~gl~~~~~L~v~ 783 (814)
T PRK15235 746 TVLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIAS 783 (814)
T ss_pred eEEEecCCCCceeeeEEEcCCCEEEEEcCCCCceEEEE
Confidence 5555545433 234578999999999999975 44454
No 126
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=68.27 E-value=53 Score=36.15 Aligned_cols=118 Identities=20% Similarity=0.341 Sum_probs=61.1
Q ss_pred eEEEeCceEEEEEEeecCCccccCCCCCCcceEEEEEeCC-C-ceEEEEEeCCCceEEEccccCccEEEEE-EcCC---c
Q 001120 69 NFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS-G-DLISSVITSSEGSYLFKNIIPGKYKLRA-SHPN---L 142 (1150)
Q Consensus 69 nf~~~g~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~-g-~~i~~ttTd~~G~f~f~~L~pG~Y~l~a-~~~g---~ 142 (1150)
|+.-.-..++|+|.+..-|+.- +...-|++++|+..+ + ..........||.|+=.-|=.|+|.|.. ..++ |
T Consensus 16 NYD~P~s~l~G~iiD~~tgE~i---~~~~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~ 92 (222)
T PF12866_consen 16 NYDEPDSTLTGRIIDVYTGEPI---QTDIGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVV 92 (222)
T ss_dssp ------EEEEEEEEECCTTEE-------STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSC
T ss_pred CCcCCCceEEEEEEEeecCCee---eecCCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEEcCCCCcccC
Confidence 5665666789999774211111 112249999999665 2 2234566789999966669999999999 6677 4
Q ss_pred eEEeeccEEEEEccccee----eeeeee-------ecCcEEEEEEEe----CCcceeceEEEEEEC
Q 001120 143 SVEVRGSTEVELGFENGE----VDDIFF-------APGYEIRGLVVA----QGNPILGVHIYLYSD 193 (1150)
Q Consensus 143 ~~~~~~~~~V~v~~~~~~----~~~~l~-------i~g~~i~G~V~~----~G~Pl~Ga~V~L~~~ 193 (1150)
... .+.|.+. |++. +.+-++ ..|..+..++.- ++..|.-+.+.+...
T Consensus 93 ~~d---ti~v~i~-G~t~~d~eVtPY~~I~~~~~~~~g~~v~asf~v~~~~~~~~i~~v~l~~~~t 154 (222)
T PF12866_consen 93 PVD---TIEVDIK-GNTTQDFEVTPYLRIKNAKISLNGNKVTASFKVEQIITNANIEEVQLYVSKT 154 (222)
T ss_dssp CE-----EEEEES-SCEEEEEEE-BSEEEEECEEEEETTEEEEEEEEEESS-HH-EEEEEEEEESS
T ss_pred CCc---cEEEEec-CceEEeEEeeeeEEEeccceeecCCEEEEEEEEEeccCCCceeEEEEEEecc
Confidence 433 4566666 4443 222222 234445554442 133676666655543
No 127
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=68.24 E-value=2.6e+02 Score=33.24 Aligned_cols=48 Identities=25% Similarity=0.202 Sum_probs=32.2
Q ss_pred cCCCcEEEc---ccCCccEEEEEEeecccccccCCCeeEEce-EEEEEEecCcccceeEEEe
Q 001120 482 DDSDQFLFR---DVLPGKYRLEVKRTSREASSMEDNWCWEQS-FIGVDVGTNDVKGVEFVQK 539 (1150)
Q Consensus 482 d~~G~f~f~---~L~PG~Y~v~~~~~~~~~~~~~~~~c~~~~-~~~v~V~~~~~~~v~F~q~ 539 (1150)
-+||.|+-. +++||+|++.+... +-.+... ++.|.|.+..+. .+|.|.
T Consensus 168 p~DGvFT~~l~l~~~~G~Y~~~v~~~---------n~vF~R~~~q~v~V~p~Pi~-~~~~~~ 219 (374)
T TIGR03503 168 PGDGIFTGEFNLDVAPGEYRPTYQSR---------NPVFLREVEQPVLVYPLPVS-YTVIQS 219 (374)
T ss_pred CCCceEEEEeeccCCCceEEEEEEEc---------CceEEEEEEEeEEEECCCee-EEEEcc
Confidence 367888764 78899999999853 4344544 447777665533 667664
No 128
>COG3188 FimD P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=67.50 E-value=62 Score=42.60 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=85.7
Q ss_pred ceeecCCceEEEeecCCcceE---Eee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-Cc
Q 001120 839 NSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 912 (1150)
Q Consensus 839 n~~t~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv 912 (1150)
...||..|..++-.|.|=++- |-+ |.++.++.-+.+.|...+|.-.-++|... ..+.+.-+++..+|+|+| |+
T Consensus 693 ~~~Td~~G~avvP~lspY~~n~v~lD~~~Lp~dvel~~~~~~v~Pt~GAvv~~~F~t~-~g~~~li~l~~~dG~~lPfGa 771 (835)
T COG3188 693 GVRTDRRGYAVVPYLTPYRENRVSLDPNNLPDDVELENTVQNVVPTEGAVVLADFDTR-IGYRALITLRRADGSPLPFGA 771 (835)
T ss_pred CcEEcCCCcEeccCcccceeceEEEccccCCCceEecccEEEEEEcCCeEEEEEEeee-ceeEEEEEEECCCCCcCCCce
Confidence 357999999999999985554 322 45689999999999999999999998766 888899999999999987 55
Q ss_pred EEEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 913 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 913 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
.|.....+ ......+.+|+.-|+||.+...-.|+-
T Consensus 772 ~v~~~~~~---~~~g~Vg~~G~vyl~gl~~~~~L~V~w 806 (835)
T COG3188 772 EVTDEGGG---QNVGIVGDDGQVYLRGLPPKGRLLVRW 806 (835)
T ss_pred EEEECCCc---eEEEEEecCCeEEEecCCCCCeEEEEE
Confidence 55444222 267889999999999999998544444
No 129
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=67.12 E-value=15 Score=33.55 Aligned_cols=45 Identities=20% Similarity=0.517 Sum_probs=28.4
Q ss_pred CCCcceEEEEEeCCCceEEEEE--eCCCce--EEEc-------cccCccEEEEEEc
Q 001120 95 GGPSNVNVELLSHSGDLISSVI--TSSEGS--YLFK-------NIIPGKYKLRASH 139 (1150)
Q Consensus 95 ~plaGv~V~L~~~~g~~i~~tt--Td~~G~--f~f~-------~L~pG~Y~l~a~~ 139 (1150)
.+...++|.+++.+|+++++.. .-+.|. |.++ .+++|.|.+++.+
T Consensus 22 ~~a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 22 EDADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp SSCEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred CcccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 4566788999998898776532 334454 4444 7889999998753
No 130
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=67.00 E-value=69 Score=42.08 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=65.2
Q ss_pred EEEeCCCceEEECccCCeeE-EEEEEEecCCeEEEecCceEEEEEeccceeeeccEEE-eceEEEEEEEeCCCcccc-Ce
Q 001120 216 HAVSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 292 (1150)
Q Consensus 216 ~a~TDa~G~f~f~~LppG~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pla-GA 292 (1150)
.+.||..|...+++|.|=.. +|......-+...++.-....+....+.+.+. .|.+ .+..+--++.+++|+||+ ||
T Consensus 658 ~v~Td~~G~AvvP~l~pY~~N~i~id~~~Lp~dvel~~t~~~VvPt~GAvv~v-~F~~~~g~~~l~~l~~~~G~~lPfGa 736 (801)
T PRK15304 658 PVWTDFWGQAVIPGLTEWRKSRVEVNTNTLPKNMDLANGTKMIKAAHGAVSKV-DFSVLNQRRVMLNVKRADGSPLPKGV 736 (801)
T ss_pred ceEECCCCeEEeCCCCCceeeeEEECccCCCCCEEEccCEEEEEeCCCcEEEE-EEEEccceEEEEEEEccCCCcCCCcE
Confidence 35899999999999987432 23321111111222333333444444443332 3543 234455567788899886 67
Q ss_pred EEEE-cceeeeEeCCCceEEECccCC-ccEEEE
Q 001120 293 KILV-DGHERSITDRDGYYKLDQVTS-NRYTIE 323 (1150)
Q Consensus 293 ~V~l-~G~~~~~TD~dG~f~l~~L~p-G~Ytv~ 323 (1150)
.|.. +|+.+.....+|..-+.++++ |..+|+
T Consensus 737 ~V~~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~ 769 (801)
T PRK15304 737 SIVDEKGNYLTSAVDDGRVFLNDIDDIPALYAK 769 (801)
T ss_pred EEECCCCcEEEEEeCCCEEEEECCCCCceEEEE
Confidence 6664 567778899999999999987 556665
No 131
>PRK15223 pilin outer membrane usher protein SafC; Provisional
Probab=66.33 E-value=55 Score=43.20 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=66.1
Q ss_pred EEEeCCCceEEECccCCee---EEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEE-eceEEEEEEEeCCCcccc-
Q 001120 216 HAVSDADGKFMFKSVPCGQ---YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE- 290 (1150)
Q Consensus 216 ~a~TDa~G~f~f~~LppG~---Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pla- 290 (1150)
.+.||..|...+++|.|=. ..|.+..-+. ..++.-....+....+.+.+. .|.+ .+..+--++.+++|+||+
T Consensus 695 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~--dvel~~t~~~vvPt~GAiv~~-~F~~~~g~~~ll~l~~~~G~~lP~ 771 (836)
T PRK15223 695 GVKTDFRGDTTVGNLNVYQENTVSLDPSRLPD--DAEVTQTDVRVVPTEGAVVEA-KFHTRIGARALMTLKREDGSAIPF 771 (836)
T ss_pred CCEECCCCeEEeCCCCCceeceEEECCCCCCC--CEEecCcEEEEEecCCcEEEE-EEEEeeeEEEEEEEECCCCCcCCC
Confidence 4789999999999998742 3333311111 122323333444444443332 3543 234455567788999885
Q ss_pred CeEEEEc--ceeeeEeCCCceEEECccCC-ccEEEEE
Q 001120 291 GVKILVD--GHERSITDRDGYYKLDQVTS-NRYTIEA 324 (1150)
Q Consensus 291 GA~V~l~--G~~~~~TD~dG~f~l~~L~p-G~Ytv~~ 324 (1150)
||.|.++ |..+...+.+|..-+.++++ |+.+|+.
T Consensus 772 Ga~v~~~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~w 808 (836)
T PRK15223 772 GAQVTVNGQDGSAALVDTDSQVYLTGLADKGELTVKW 808 (836)
T ss_pred CeEEEecCCCceEEEECCCCEEEEEccCCCceEEEEE
Confidence 8888764 46678999999999999986 5666654
No 132
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=64.52 E-value=10 Score=35.86 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=31.1
Q ss_pred CCCCcceEEEEEeCC--C--ceEEEEEeCCCceEEEccccCccEEE
Q 001120 94 GGGPSNVNVELLSHS--G--DLISSVITSSEGSYLFKNIIPGKYKL 135 (1150)
Q Consensus 94 g~plaGv~V~L~~~~--g--~~i~~ttTd~~G~f~f~~L~pG~Y~l 135 (1150)
..||+||+|.|.=.+ + ......+||++|.|++. |+...+..
T Consensus 18 ~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~-l~~~~~~~ 62 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIE-LPSDPGSS 62 (97)
T ss_pred CccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEE-ecCccccc
Confidence 479999999998444 2 34678999999999998 66544443
No 133
>COG3188 FimD P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=64.50 E-value=1.3e+02 Score=39.75 Aligned_cols=104 Identities=11% Similarity=0.118 Sum_probs=65.0
Q ss_pred eEEEeCCCceEEECccCCeeE-EEEEEEecCCeEEEecCceEEEEEeccceeeeccEEE-eceEEEEEEEeCCCcccc-C
Q 001120 215 CHAVSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-G 291 (1150)
Q Consensus 215 ~~a~TDa~G~f~f~~LppG~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pla-G 291 (1150)
..+.||..|.-.++.|.|=.+ +|...-..-+...++.-....+....+.+.+. .|.. .|..+--++.+++|+||+ |
T Consensus 692 ~~~~Td~~G~avvP~lspY~~n~v~lD~~~Lp~dvel~~~~~~v~Pt~GAvv~~-~F~t~~g~~~li~l~~~dG~~lPfG 770 (835)
T COG3188 692 TGVRTDRRGYAVVPYLTPYRENRVSLDPNNLPDDVELENTVQNVVPTEGAVVLA-DFDTRIGYRALITLRRADGSPLPFG 770 (835)
T ss_pred CCcEEcCCCcEeccCcccceeceEEEccccCCCceEecccEEEEEEcCCeEEEE-EEeeeceeEEEEEEECCCCCcCCCc
Confidence 368999999999998887433 23331111111122333333444444443332 3543 344555667777898886 8
Q ss_pred eEEEEcce--eeeEeCCCceEEECccCCcc
Q 001120 292 VKILVDGH--ERSITDRDGYYKLDQVTSNR 319 (1150)
Q Consensus 292 A~V~l~G~--~~~~TD~dG~f~l~~L~pG~ 319 (1150)
|.|+.++. .+...+.+|..-|.+|+++.
T Consensus 771 a~v~~~~~~~~~g~Vg~~G~vyl~gl~~~~ 800 (835)
T COG3188 771 AEVTDEGGGQNVGIVGDDGQVYLRGLPPKG 800 (835)
T ss_pred eEEEECCCceEEEEEecCCeEEEecCCCCC
Confidence 88888544 67899999999999998865
No 134
>PRK15207 long polar fimbrial outer membrane usher protein LpfC; Provisional
Probab=64.48 E-value=71 Score=42.22 Aligned_cols=107 Identities=13% Similarity=0.153 Sum_probs=66.4
Q ss_pred EEeCCCceEEECccCCee-EEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEE-eceEEEEEEEeCCCcccc-CeE
Q 001120 217 AVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVK 293 (1150)
Q Consensus 217 a~TDa~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pla-GA~ 293 (1150)
+.||..|...+++|.|=. -+|......-+...++.-....+....+.+... .|.+ .+..+--++.+++|+||+ ||.
T Consensus 698 ~~Td~~G~AvVP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~v-~F~~~~g~~~ll~l~~~~G~~lP~Ga~ 776 (842)
T PRK15207 698 VEVDWMGNAVVPYLTPYRETEVSLRSDSLGQNVDLQEAFQKVVPTRGAIVRA-RFDTRVGYRVLMSLKQANGNAVPFGAT 776 (842)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEEEcCCCCcCCccEE
Confidence 699999999999998743 233331111111222323333444444443332 3553 234455577788999998 998
Q ss_pred EEE-c--ceeeeEeCCCceEEECccCC-ccEEEEE
Q 001120 294 ILV-D--GHERSITDRDGYYKLDQVTS-NRYTIEA 324 (1150)
Q Consensus 294 V~l-~--G~~~~~TD~dG~f~l~~L~p-G~Ytv~~ 324 (1150)
|.+ + +..+.....+|..-+.++++ |+.+|+-
T Consensus 777 V~~~~~~~~~~g~Vg~~G~vyl~gl~~~~~l~v~w 811 (842)
T PRK15207 777 ATLIDTTKEASSIVGEEGQLYISGMPEEGELQVSW 811 (842)
T ss_pred EEecCCCCceEEEECCCCEEEEEcCCCCceEEEEE
Confidence 887 3 34568999999999999986 5666654
No 135
>PF06427 UDP-g_GGTase: UDP-glucose:Glycoprotein Glucosyltransferase; InterPro: IPR009448 The N-terminal region of this group of proteins is required for correct folding of the ER UDP-Glc: glucosyltransferase. These proteins selectively reglucosylates unfolded glycoproteins, thus providing quality control for protein transport out of the ER. Unfolded, denatured glycoproteins are substantially better substrates for glucosylation by this enzyme than are the corresponding native proteins. This protein and transient glucosylation may be involved in monitoring and/or assisting the folding and assembly of newly made glycoproteins, in order to identify glycoproteins that need assistance in folding from chaperones; GO: 0003980 UDP-glucose:glycoprotein glucosyltransferase activity, 0006486 protein glycosylation
Probab=64.19 E-value=12 Score=40.76 Aligned_cols=70 Identities=14% Similarity=0.374 Sum_probs=50.7
Q ss_pred eEEEEEEECCCCcccCCceEEEEEcC---CCcCCc--ceeeEEEeCceEEEEEEeecCCccccCCCCCCcceEEEEEeCC
Q 001120 34 GSFVIKVNGPEGWSWNPDKVAVTVDD---TGCNGN--EDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS 108 (1150)
Q Consensus 34 G~Y~L~~~~P~Gw~f~p~~v~v~Vd~---~~~s~~--~dinf~~~g~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~ 108 (1150)
=-|++.+..|+.|...|.......|. +.+... ....|.++..-|+|.-.+.. +|.|+.|++++|...+
T Consensus 127 ~llTl~~d~P~sW~V~~~~a~~DLDNI~l~~~~~~~~v~a~y~Le~iLieG~~~d~~-------~~~pp~Glql~L~~~~ 199 (211)
T PF06427_consen 127 PLLTLGMDVPESWLVEPKEAVYDLDNIKLSDLSSGTTVEAVYELESILIEGHARDIT-------TGSPPRGLQLQLGTEN 199 (211)
T ss_pred ceEEecCCCCCceEEEEeecCcCCCceecccCCCCceEEEEEEEeeEEEEeEEeecC-------CCCCCCCcEEEEecCC
Confidence 56888999999999887766433333 112222 46778999999999987752 4789999999998655
Q ss_pred Cc
Q 001120 109 GD 110 (1150)
Q Consensus 109 g~ 110 (1150)
+.
T Consensus 200 ~~ 201 (211)
T PF06427_consen 200 GP 201 (211)
T ss_pred CC
Confidence 43
No 136
>PRK15198 outer membrane usher protein FimD; Provisional
Probab=63.05 E-value=95 Score=41.17 Aligned_cols=105 Identities=17% Similarity=0.106 Sum_probs=77.4
Q ss_pred eeecCCceEEEeecCCcc---eEEee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-CcE
Q 001120 840 SVSWAGGSFHFDNLFPGN---FYLRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 913 (1150)
Q Consensus 840 ~~t~~~G~~~f~~L~PG~---Y~~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv~ 913 (1150)
..||.+|...+-+|.|=+ ..|-+ +..+.+++-+.+.|.-.+|.-..+.|..++. ..+.=+++. +|+|+| |+.
T Consensus 715 ~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~nvei~~t~~~vvPt~GAvv~v~F~~~~g-~~~ll~~~~-~G~~lP~Ga~ 792 (860)
T PRK15198 715 VKTDWRGYAVMPYATVYRYNRVALDTNTMGNSTDVENNVSSVVPTQGALVRANFDTRIG-VRALITVTQ-GGKPVPFGAL 792 (860)
T ss_pred CEECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEEeee-eEEEEEEcc-CCCCCCCceE
Confidence 579999999999999733 33434 3456778888888999999999999987554 334444665 899887 555
Q ss_pred EEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 914 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 914 v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
|. +.++. .......+|.--|+||.|....+|+.
T Consensus 793 V~--~~~~~--~~g~Vg~~G~vyl~gl~~~~~l~v~w 825 (860)
T PRK15198 793 VR--ETSSG--ITSMVGDDGQIYLSGLPLSGELLIQW 825 (860)
T ss_pred EE--CCCCc--EEEEECCCCEEEEEcCCCCceEEEEE
Confidence 54 33332 44789999999999999887666655
No 137
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=62.59 E-value=39 Score=37.23 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=32.6
Q ss_pred CCCcceEEEEEeCCCceEEEEEe--CCCceEEE--c-------cccCccEEEEEEc
Q 001120 95 GGPSNVNVELLSHSGDLISSVIT--SSEGSYLF--K-------NIIPGKYKLRASH 139 (1150)
Q Consensus 95 ~plaGv~V~L~~~~g~~i~~ttT--d~~G~f~f--~-------~L~pG~Y~l~a~~ 139 (1150)
.+...|+|++++.+|+++++..- -+.|.+.| + .+++|.|++++.+
T Consensus 123 ~~a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A 178 (225)
T PRK06655 123 SAADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASA 178 (225)
T ss_pred CCCcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEE
Confidence 46667999999999988865433 35676666 2 3789999988743
No 138
>PRK15223 pilin outer membrane usher protein SafC; Provisional
Probab=62.39 E-value=99 Score=40.90 Aligned_cols=109 Identities=19% Similarity=0.154 Sum_probs=81.0
Q ss_pred cceeecCCceEEEeecCCcce---EEee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-C
Q 001120 838 NNSVSWAGGSFHFDNLFPGNF---YLRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-G 911 (1150)
Q Consensus 838 ~n~~t~~~G~~~f~~L~PG~Y---~~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-g 911 (1150)
.+..||..|...+-+|.|=+. .|-+ +..+.+++-..+.|.-.+|.-..+.|...+. ..+.=+++..+|+|+| |
T Consensus 694 ~~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g-~~~ll~l~~~~G~~lP~G 772 (836)
T PRK15223 694 PGVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIG-ARALMTLKREDGSAIPFG 772 (836)
T ss_pred CCCEECCCCeEEeCCCCCceeceEEECCCCCCCCEEecCcEEEEEecCCcEEEEEEEEeee-EEEEEEEECCCCCcCCCC
Confidence 346799999999999997433 3433 3356778888888999999999999876655 4456678889999876 6
Q ss_pred cEEEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 912 VSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 912 v~v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
+.|.+ +.++. .......+|.--|+||.|....+|+.
T Consensus 773 a~v~~-~~~g~--~~g~Vg~~G~vyl~g~~~~~~l~v~w 808 (836)
T PRK15223 773 AQVTV-NGQDG--SAALVDTDSQVYLTGLADKGELTVKW 808 (836)
T ss_pred eEEEe-cCCCc--eEEEECCCCEEEEEccCCCceEEEEE
Confidence 65544 32221 45789999999999999887666544
No 139
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=62.35 E-value=1.2e+02 Score=34.85 Aligned_cols=114 Identities=21% Similarity=0.311 Sum_probs=59.2
Q ss_pred CCCceEEecCCCCCcEEEEEEEEecCC--------CCcceeccCCceEEEEe--------cCccceeceEEEEe-c---C
Q 001120 930 DTSGSYRLRGLHPDTTYVIKVVKKDGF--------GSTKIERASPESVTVKV--------GSGDIKGLDFLVFE-Q---P 989 (1150)
Q Consensus 930 d~~G~~~i~gL~Pg~~y~i~~~~~~~~--------~~~~i~~~~p~~~~v~v--------~~~d~~~~~f~~~~-~---~ 989 (1150)
...=++-|++|+|+++|.+.+=.-+.. |.....+..+++....+ .=+.-.|+.|..|+ | .
T Consensus 12 g~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~~ 91 (300)
T PF10179_consen 12 GQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRSS 91 (300)
T ss_pred CCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCCC
Confidence 334567899999999999988764322 22222211122111111 11223347888887 3 2
Q ss_pred CcEEEEEEEEeccccccccceEEEEEecCCCCceEEEEeeCCceeEEeecCCCC-cEEEEEE
Q 001120 990 EKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKG-KHLLQLR 1050 (1150)
Q Consensus 990 ~~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~~~v~~~~~~~~~~~f~~~~l~~~-~y~v~l~ 1050 (1150)
.+-.+.=.|...+ -.++|+|.. +...+.+.-.+---..|.++++.+| +|.|+++
T Consensus 92 ~~~~~~l~v~~C~-----G~V~v~i~r--~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~ 146 (300)
T PF10179_consen 92 THQSLWLFVQSCS-----GSVRVEISR--NGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQ 146 (300)
T ss_pred CCccEEEEEEeCC-----CeEEEEEEE--CCeEEeeeecccceEEEEECCCCCCCeEEEEEE
Confidence 2222322233332 137788855 2333333212222345888887777 6999994
No 140
>PRK15284 putative fimbrial outer membrane usher protein StfC; Provisional
Probab=62.11 E-value=77 Score=42.08 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=64.5
Q ss_pred EEeCCCceEEECccCCee-EEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEE-eceEEEEEEEeCCCcccc-CeE
Q 001120 217 AVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVK 293 (1150)
Q Consensus 217 a~TDa~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pla-GA~ 293 (1150)
+.||..|...+++|.|=. -+|......-+...++.-....+....+.+... .|.+ .+..+-=++.+++|+|++ ||.
T Consensus 706 v~Td~~G~AvVp~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~-~F~~~~g~~~l~~l~~~dG~~lPfGa~ 784 (881)
T PRK15284 706 VYTNMFGKAVVADVNNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYR-KFAVISGQKAMAVLRLRDGSHPPFGAE 784 (881)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCEEEccCEEEEEEcCCcEEEE-EEEEeeeeEEEEEEEcCCCCcCCCceE
Confidence 589999999999998732 223321111111122323333444444433322 3443 233344456777898886 777
Q ss_pred EEE-cceeeeEeCCCceEEECccCC-ccEEEEE
Q 001120 294 ILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 324 (1150)
Q Consensus 294 V~l-~G~~~~~TD~dG~f~l~~L~p-G~Ytv~~ 324 (1150)
|.. +|+.+...+.+|.--|.++++ |+.+|+-
T Consensus 785 V~~~~g~~~giVg~~G~vyL~gl~~~~~l~V~w 817 (881)
T PRK15284 785 VKNDNQQQVGLVDDDGNVYLAGVKPGEHMQVFW 817 (881)
T ss_pred EEcCCCceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 765 567778999999999999987 5666654
No 141
>PRK15213 fimbrial outer membrane usher protein PefC; Provisional
Probab=62.07 E-value=98 Score=40.71 Aligned_cols=125 Identities=10% Similarity=0.135 Sum_probs=72.6
Q ss_pred EEEeCCCceEEECccCCe-eEEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEEe-ceEEEEEEEeCCCcccc-Ce
Q 001120 216 HAVSDADGKFMFKSVPCG-QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GV 292 (1150)
Q Consensus 216 ~a~TDa~G~f~f~~LppG-~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pla-GA 292 (1150)
...||..|...++ |.|= .-+|......-+...++.-....+....+...+. .|.+. +..+--++.+++|+||+ |+
T Consensus 665 ~~~Td~~G~alVP-l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~gAvv~~-~F~~~~g~~~ll~l~~~~G~~lP~Ga 742 (797)
T PRK15213 665 SGPTDSKGNTVVP-LSSYDLNTVTVNAENLPLNTELTTTSQNVVPTDKAVVYR-EFKALKVLRYILRVKQKDGRFVPGGS 742 (797)
T ss_pred CcEECCCCeEEEe-CCCceeeeEEECccCCCCCEEecccEEEEEecCCcEEEE-EEEEEeeeEEEEEEEccCCCcCCCCe
Confidence 5789999999999 8763 2223321111111222333333444444443332 35532 34555577788999886 77
Q ss_pred EEEE-cceeeeEeCCCceEEECccCC-ccEEEEEEeccccccceeeEEEcCCcceeeeE
Q 001120 293 KILV-DGHERSITDRDGYYKLDQVTS-NRYTIEAVKVHYKFNKLKEYMVLPNMASIADI 349 (1150)
Q Consensus 293 ~V~l-~G~~~~~TD~dG~f~l~~L~p-G~Ytv~~~~~~y~~~~~~~v~v~p~~~~i~dI 349 (1150)
.|.- +|+.+...+.+|.--|.++++ |+.+|. .+.+.-. ++.|+..++.+|
T Consensus 743 ~v~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v~----~C~~~~~---~~~~~~~~~~~~ 794 (797)
T PRK15213 743 WARNEQGTPLGFVANNGVLLMNLLDAPGDISVG----QCRFPAA---KLVQNTGKVQEI 794 (797)
T ss_pred EEECCCCcEEEEEcCCCEEEEEcCCCCCEEEEE----EEEEECc---cccCCccceeEE
Confidence 7754 567778999999999999986 677773 2333322 344555455554
No 142
>PRK15298 fimbrial outer membrane usher protein StiC; Provisional
Probab=61.68 E-value=1.1e+02 Score=40.36 Aligned_cols=109 Identities=15% Similarity=0.179 Sum_probs=79.2
Q ss_pred ceeecCCceEEEeecCCcceE---Eee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-Cc
Q 001120 839 NSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 912 (1150)
Q Consensus 839 n~~t~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv 912 (1150)
...||..|...+-+|.|=+.- |-+ +..+.+++-+.+.|.-.+|.-..+.|...+. ..+.=+++..+|+|+| |+
T Consensus 706 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~g-~~~ll~l~~~~G~~lP~Ga 784 (848)
T PRK15298 706 GVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKG-YRVLLTLTRSNGEPVPFGA 784 (848)
T ss_pred CCEECCCCeEEeCCCCccceeeEEECCCCCCCCeEecccEEEecccCCeEEEEEEEEEee-EEEEEEEECCCCCcCCCCc
Confidence 358999999999999974443 333 3346777778888899999999998876654 4455668888999987 66
Q ss_pred EEEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 913 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 913 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
.|.+ +.++. ........+|.--|+||.|.....|+.
T Consensus 785 ~v~~-~~~~~-~~~g~Vg~~G~vyl~g~~~~~~l~v~w 820 (848)
T PRK15298 785 TASV-DGQDA-NLASIVGDKGQVFLSGLPEEGLLLVNW 820 (848)
T ss_pred EEEE-cCCCC-eeEEEECCCCEEEEEecCCCceEEEEE
Confidence 6655 22211 234788999999999998877655543
No 143
>PRK15248 fimbrial outer membrane usher protein StbC; Provisional
Probab=60.76 E-value=66 Score=42.56 Aligned_cols=108 Identities=11% Similarity=0.044 Sum_probs=66.1
Q ss_pred EEEeCCCceEEECccCCe-eEEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEE-eceEEEEEEEeCCCcccc-Ce
Q 001120 216 HAVSDADGKFMFKSVPCG-QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 292 (1150)
Q Consensus 216 ~a~TDa~G~f~f~~LppG-~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pla-GA 292 (1150)
..+||..|...+++|.|= .-+|......-+...++.-....+....+...+. .|.+ .+..+--++.+++|+||+ |+
T Consensus 709 ~~~Td~~G~avVp~L~pY~~N~i~ID~~~LP~dvel~~t~~~vvP~~GAiv~~-~F~~~~g~~~l~~l~~~dG~~lP~Ga 787 (853)
T PRK15248 709 GAVVDRFGYAILPSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAGAIARV-NFATISGKAVLISVKMPDGGIPPMGA 787 (853)
T ss_pred CCeECCCCeEEeCCCCCceeeeEEECCcCCCCCEEEcccEEeecccCCcEEEE-EEEEeeceEEEEEEEcCCCCcCCCce
Confidence 367999999999999873 2233331111111122222233333333433332 3553 345566678888999885 77
Q ss_pred EEEE-cceeeeEeCCCceEEECccCC-ccEEEEE
Q 001120 293 KILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 324 (1150)
Q Consensus 293 ~V~l-~G~~~~~TD~dG~f~l~~L~p-G~Ytv~~ 324 (1150)
.|.. +|+.+.....+|..-+.++++ |+.+|+-
T Consensus 788 ~V~~~~g~~~g~Vg~~G~vyl~~~~~~~~l~V~w 821 (853)
T PRK15248 788 DVFNGEGTNIGMVGQSGQIYARIAHPSGSLLVRW 821 (853)
T ss_pred EEECCCCcEEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 7765 567778999999999989886 5566654
No 144
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=60.30 E-value=35 Score=31.99 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=29.5
Q ss_pred ceEEEEEeCCCceEEE--E-EeCCCceEEEc-----cccCccEEEEEEcC
Q 001120 99 NVNVELLSHSGDLISS--V-ITSSEGSYLFK-----NIIPGKYKLRASHP 140 (1150)
Q Consensus 99 Gv~V~L~~~~g~~i~~--t-tTd~~G~f~f~-----~L~pG~Y~l~a~~~ 140 (1150)
-+.|+|.+++|..+.. . .++.+|.|++. +.+.|.|+|.+...
T Consensus 37 ~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 37 PVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp EEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred ceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 4677888999966543 3 45899998886 33459999998773
No 145
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=60.17 E-value=22 Score=34.26 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=32.0
Q ss_pred CCCcceEEEEEeCCCceEEE-EEeCCCc---eEEEccccCccEEEEEEcCCc
Q 001120 95 GGPSNVNVELLSHSGDLISS-VITSSEG---SYLFKNIIPGKYKLRASHPNL 142 (1150)
Q Consensus 95 ~plaGv~V~L~~~~g~~i~~-ttTd~~G---~f~f~~L~pG~Y~l~a~~~g~ 142 (1150)
.++..|+|++.+.+|+++.+ ..+.+.+ .+.+.++++|.|.|.......
T Consensus 45 ~~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g 96 (106)
T PF11589_consen 45 SPIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG 96 (106)
T ss_dssp S--SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred CCCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence 68889999999988877654 4455555 677788999999999876533
No 146
>PRK15217 fimbrial outer membrane usher protein; Provisional
Probab=58.60 E-value=86 Score=41.38 Aligned_cols=107 Identities=7% Similarity=0.030 Sum_probs=65.7
Q ss_pred eEEEeCCCceEEECccCCe---eEEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEE-eceEEEEEEEeCCCcccc
Q 001120 215 CHAVSDADGKFMFKSVPCG---QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE 290 (1150)
Q Consensus 215 ~~a~TDa~G~f~f~~LppG---~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pla 290 (1150)
..+.||..|...+++|.|= +..|.+..-+. ..++.-....+....+.+.+. .|.+ .+..+--++.+++|+||+
T Consensus 688 ~~~~Td~~G~AvvP~l~pY~~N~i~ID~~~LP~--dvel~~t~~~vvPt~GAiv~~-~F~~~~g~~~ll~l~~~~G~~lP 764 (826)
T PRK15217 688 KYRTTNRKGVVVYDGLTPYRENHLMLDVSQSDS--ETELRGNRKIAAPYRGAVVLV-NFDTDQRKPWFIKALRADGQPLT 764 (826)
T ss_pred CCCeECCCCEEEeCCCCCceeceEEECCcCCCC--CEEecccEEEEEecCCcEEEE-EEEEecceEEEEEEEcCCCCcCC
Confidence 3478999999999999873 23333321111 122323333444444443332 3553 234455567788999986
Q ss_pred -CeEEEE-cceeeeEeCCCceEEECccCC-ccEEEEE
Q 001120 291 -GVKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 324 (1150)
Q Consensus 291 -GA~V~l-~G~~~~~TD~dG~f~l~~L~p-G~Ytv~~ 324 (1150)
||.|.- +|+.+.....+|.--+.++.+ +..+|..
T Consensus 765 ~Ga~V~~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~w 801 (826)
T PRK15217 765 FGYEVNDIHGHNIGVVGQGSQLFIRTNEVPPSVKVAI 801 (826)
T ss_pred CceEEECCCCcEEEEEcCCCeEEEEcCCCCceEEEEE
Confidence 777765 577778999999988877754 6666554
No 147
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=56.08 E-value=1.1e+02 Score=35.16 Aligned_cols=106 Identities=20% Similarity=0.309 Sum_probs=66.2
Q ss_pred ecCCceEEEeecCCcc-eEEee--c--ccc----c-------ccCCCceeEEecCCceEEEEEEEEee--eEeEE-----
Q 001120 842 SWAGGSFHFDNLFPGN-FYLRP--L--LKE----Y-------AFSPPAQAIELGSGESREVIFQATRV--AYSAT----- 898 (1150)
Q Consensus 842 t~~~G~~~f~~L~PG~-Y~~~~--~--~ke----y-------~~~p~~~~i~v~~g~~~~v~~~~~r~--~~s~~----- 898 (1150)
++..-...+.+|.|++ |||-- + ... | .=++.++...+++|+-..+.|.+... .|+-.
T Consensus 11 vg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~ 90 (300)
T PF10179_consen 11 VGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRS 90 (300)
T ss_pred cCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCC
Confidence 3444567888899986 44432 1 110 1 11234667899999999999987764 12111
Q ss_pred -----E--eeEcCCCCccCCcEEEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEEE
Q 001120 899 -----G--TITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVV 951 (1150)
Q Consensus 899 -----G--~v~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~~ 951 (1150)
. .|.+=+|. |.|++.-.+..+..+...-.-..|+++|+.||..|.|++.
T Consensus 91 ~~~~~~~l~v~~C~G~----V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~ 146 (300)
T PF10179_consen 91 STHQSLWLFVQSCSGS----VRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQ 146 (300)
T ss_pred CCCccEEEEEEeCCCe----EEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEE
Confidence 0 02222333 6677765554444444556667899999999999999994
No 148
>PRK15294 putative fimbrial outer membrane usher protein SthC; Provisional
Probab=55.83 E-value=93 Score=41.20 Aligned_cols=105 Identities=12% Similarity=0.131 Sum_probs=65.1
Q ss_pred EEeCCCceEEECccCCe---eEEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEEe-ceEEEEEEEeCCCcccc-C
Q 001120 217 AVSDADGKFMFKSVPCG---QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-G 291 (1150)
Q Consensus 217 a~TDa~G~f~f~~LppG---~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pla-G 291 (1150)
+.||..|...+++|.|= .+.|.+. .-+...++.-....+....+.+.+. .|.+. +..+-=++.+++|+||+ |
T Consensus 701 ~~Td~~G~AvvP~l~pY~~N~i~iD~~--~LP~dvel~~t~~~vvPt~GAiv~~-~F~~~~g~~~l~~l~~~~G~~lPfG 777 (845)
T PRK15294 701 VDTDFRGYAVVPYASPYHRNEVSLDTT--GIRKNIELIDTSKTLVPTRGAVVRA-EYKTNIGYKALMVLTRINNLPVPFG 777 (845)
T ss_pred CEECCCCeEEeCCCCccccceEEECCC--CCCCCeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEEECCCCCcCCce
Confidence 69999999999998873 2333331 1111122323333344444433332 35432 33444456677899885 8
Q ss_pred eEEEE-c--ceeeeEeCCCceEEECccCC-ccEEEEE
Q 001120 292 VKILV-D--GHERSITDRDGYYKLDQVTS-NRYTIEA 324 (1150)
Q Consensus 292 A~V~l-~--G~~~~~TD~dG~f~l~~L~p-G~Ytv~~ 324 (1150)
|.|.+ + |+.+.....+|..-|.+|++ |+.+|+-
T Consensus 778 a~V~~~~~~g~~~g~Vg~~G~vyl~gl~~~~~L~v~w 814 (845)
T PRK15294 778 ATVSSLTKPDNHSSFVGDAGQAWLTGLEKQGRLLVKW 814 (845)
T ss_pred EEEEccCCCCceEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 88876 3 67778999999999999986 6777755
No 149
>PRK15273 putative fimbrial outer membrane usher protein SteB; Provisional
Probab=55.77 E-value=1e+02 Score=41.05 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=65.7
Q ss_pred EEeCCCceEEECccCCee---EEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEE-eceEEEEEEEeCCCcccc-C
Q 001120 217 AVSDADGKFMFKSVPCGQ---YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-G 291 (1150)
Q Consensus 217 a~TDa~G~f~f~~LppG~---Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pla-G 291 (1150)
+.||..|...+++|.|=. ..|.+. .-+...++.-....+....+.+.. ..|.+ .+..+-=++.+++|+||+ |
T Consensus 683 ~~Td~~G~AvvP~L~pY~~N~i~ID~~--~LP~dvei~~t~~~vvPt~GAiv~-~~F~~~~g~~~l~~l~~~dG~~lPfG 759 (881)
T PRK15273 683 TSTNIFGKAVIADVGSYSRSLARIDLN--KLPEKAEATKSVVQITLTEGAIGY-RHFDVVSGEKMMAVFRLADGDFPPFG 759 (881)
T ss_pred CeECCCCeEEeCCCCcceeeeEEECCc--CCCCCEEeccCEEEEEecCCCEEE-EEEEEEeeeEEEEEEEccCCCcCCCc
Confidence 789999999999998732 223221 111122233333344444444333 23543 234444566788899885 7
Q ss_pred eEEEE-cceeeeEeCCCceEEECccCC-ccEEEEE
Q 001120 292 VKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 324 (1150)
Q Consensus 292 A~V~l-~G~~~~~TD~dG~f~l~~L~p-G~Ytv~~ 324 (1150)
|.|.. +|+.+...+.+|..-|.++++ |+.+|+-
T Consensus 760 a~V~~~~g~~~giVg~~G~vyl~g~~~~~~l~V~w 794 (881)
T PRK15273 760 AEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFW 794 (881)
T ss_pred eEEEcCCCcEEEEEcCCCEEEEecCCCCceEEEEe
Confidence 87765 577778999999999999987 4665544
No 150
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.94 E-value=1.1e+02 Score=35.66 Aligned_cols=156 Identities=20% Similarity=0.300 Sum_probs=85.4
Q ss_pred eCCCceEEeccCCCCceEEEEEeC----CCeEEeeeccceeEEeeeeeEEEEEEecCCCCCcccceEEEEeCCCc-cccc
Q 001120 765 TGADGSFIGGPLYDDITYNVEASK----PGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDG-YRNN 839 (1150)
Q Consensus 765 Td~~G~f~~gpL~~~~~y~v~a~k----~gy~l~~~~~~~f~~~kl~~i~v~v~~~~~~~~pl~gvllslsg~~~-~r~n 839 (1150)
-=.||+|++ ..|.+.++. ++|+--. .+|..--.+.|++++-.....|+.+.++.+.....+. .+.+
T Consensus 252 IPPDGkFrL------lsy~v~~~~~v~~pvyv~~~---i~l~~~~~~ri~~tvg~~~~~gK~ie~itVt~~~pn~i~~~~ 322 (418)
T KOG2740|consen 252 IPPDGKFRL------LSYRVDAQNQVAIPVYVKNS---ISLDSNHQGRISLTVGPKKKMGKTIELITVTVQDPNEIAYAS 322 (418)
T ss_pred cCCCCcEEE------EEEEEehhhccccceEEeee---eccCCCceEEEEEeccccccccceeEeEEEEecCccceeeee
Confidence 356777777 577777763 3444322 2333222467777776555557888877666555432 4555
Q ss_pred eeecCCceEEEee-cCCcceEEeecccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccCCcEEEEEe
Q 001120 840 SVSWAGGSFHFDN-LFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARS 918 (1150)
Q Consensus 840 ~~t~~~G~~~f~~-L~PG~Y~~~~~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~gv~v~~~~ 918 (1150)
..+ ..|++.++- ..-+++.+.-+.+..- -+=..++..++|.+...++.--.-.|++. |..+.|..||..+
T Consensus 323 k~~-~~g~~~~~~~~k~l~W~~~~i~tg~l-p~Lkg~~~~e~~~sk~~~l~t~~Lqykiq-------g~alsglkVe~Ld 393 (418)
T KOG2740|consen 323 KIL-THGTFTNSIIMKQLTWTFGSIATGKL-PVLKGTINLEPGFSKKVDLPTLSLQYKIQ-------GQALSGLKVERLD 393 (418)
T ss_pred ccc-ccceeEeecccceeEEEeecccCCcc-cccccccccCCCCCccccCcccceeeeee-------eeeccceEEEeee
Confidence 444 455555544 2233333322222211 12234467778877777666666677655 4567899999988
Q ss_pred CC----CceeEEEeeCCCceEEec
Q 001120 919 ES----KGYYEETVTDTSGSYRLR 938 (1150)
Q Consensus 919 ~~----~~~~~~~~Td~~G~~~i~ 938 (1150)
+- ..+.+--.+-.-|+|.+|
T Consensus 394 m~~~~~k~yKGvKy~t~agnfqvR 417 (418)
T KOG2740|consen 394 MYGEPYKPYKGVKYKTKAGNFQVR 417 (418)
T ss_pred ecCCCCccccceEEEEeeeeEEEe
Confidence 63 223232233344666554
No 151
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=52.11 E-value=31 Score=32.19 Aligned_cols=48 Identities=6% Similarity=0.024 Sum_probs=32.9
Q ss_pred EEEeCCCccccCeEEEEcceeeeEeCCCceEEECccCCccEEEEEEecc
Q 001120 280 RVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVH 328 (1150)
Q Consensus 280 ~V~d~~G~plaGA~V~l~G~~~~~TD~dG~f~l~~L~pG~Ytv~~~~~~ 328 (1150)
..+|.++.|++|..|..|..-+---+-.=+..+ +|+||+|+|++.-..
T Consensus 25 lliD~~~~~~~~~~I~~~~n~vhy~~Gqte~~I-~L~PG~htLtl~~~d 72 (87)
T PF14347_consen 25 LLIDGDGPPLANEPIPFNINGVHYGKGQTELNI-ELPPGKHTLTLQLGD 72 (87)
T ss_pred EEECCCCCcCCCCeeeecCCeEEeCCCEEEEEE-EeCCCCEEEEEEeCC
Confidence 456778889999999885444433222224566 599999999987654
No 152
>PRK15284 putative fimbrial outer membrane usher protein StfC; Provisional
Probab=51.05 E-value=2e+02 Score=38.32 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=78.0
Q ss_pred eeecCCceEEEeecCCcce---EEee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-CcE
Q 001120 840 SVSWAGGSFHFDNLFPGNF---YLRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 913 (1150)
Q Consensus 840 ~~t~~~G~~~f~~L~PG~Y---~~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv~ 913 (1150)
..||..|...+-+|.|=+. .|-+ +..+.+++-+.+.|...+|.-.-+.|...+. ..+.=+++..+|+|+| |+.
T Consensus 706 v~Td~~G~AvVp~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g-~~~l~~l~~~dG~~lPfGa~ 784 (881)
T PRK15284 706 VYTNMFGKAVVADVNNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFAVISG-QKAMAVLRLRDGSHPPFGAE 784 (881)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCEEEccCEEEEEEcCCcEEEEEEEEeee-eEEEEEEEcCCCCcCCCceE
Confidence 4799999999999997443 3433 3346777778888999999888888866544 3344468888999877 565
Q ss_pred EEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 914 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 914 v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
|. +.++ ........+|+--|+||.|....+|+.
T Consensus 785 V~--~~~g--~~~giVg~~G~vyL~gl~~~~~l~V~w 817 (881)
T PRK15284 785 VK--NDNQ--QQVGLVDDDGNVYLAGVKPGEHMQVFW 817 (881)
T ss_pred EE--cCCC--ceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 54 3332 245789999999999999987766655
No 153
>PRK09828 putative fimbrial outer membrane usher protein; Provisional
Probab=50.35 E-value=1.4e+02 Score=39.70 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=66.7
Q ss_pred EEeCCCceEEECccCCee---EEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEE-eceEEEEEEEeCCCcccc-C
Q 001120 217 AVSDADGKFMFKSVPCGQ---YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-G 291 (1150)
Q Consensus 217 a~TDa~G~f~f~~LppG~---Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pla-G 291 (1150)
..||..|...++.|.|=. +.|.+. .-+...++.-....+....+.+.+. .|.+ .+..+-=++.+++|+||+ |
T Consensus 718 ~~Td~~G~avVP~l~pY~~N~i~ID~~--~LP~dvel~~t~~~vvPt~GAvv~~-~F~~~~g~~~ll~l~~~~G~~lP~G 794 (865)
T PRK09828 718 STIDRWGYGVTSALSPYRENRVALDIN--TLENDVELKSTSAVAVPRQGAVVLA-DFETDQGRSAIMNITRSDGKNIPFA 794 (865)
T ss_pred ceeCCCCeEEeCCCCCceeeeEEECCc--CCCCCeEecccEEEEEecCCcEEEE-EEEeecceEEEEEEECCCCCcCCCc
Confidence 479999999999998743 333332 1111222333334444444443332 3553 334455567788999985 7
Q ss_pred eEEEE-cceeeeEeCCCceEEECccCC-ccEEEEE
Q 001120 292 VKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 324 (1150)
Q Consensus 292 A~V~l-~G~~~~~TD~dG~f~l~~L~p-G~Ytv~~ 324 (1150)
+.|.. +|+.+...+.+|..-|.++++ |+.+|+-
T Consensus 795 a~V~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v~w 829 (865)
T PRK09828 795 ADVYDEQGNVIGNVGQGGQAFVRGIEDQGELRIRW 829 (865)
T ss_pred eEEECCCCcEEEEEeCCCEEEEEcCCCCceEEEEE
Confidence 77765 567778999999999999987 5666655
No 154
>PRK15205 long polar fimbrial protein LpfE; Provisional
Probab=49.75 E-value=1.1e+02 Score=32.17 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=48.3
Q ss_pred CCccchhhhhhHhhhhhhhcccC------ceEeeCCeee---------------eEEEE-EEECCCCcccCCceEEEEEc
Q 001120 1 MKSRDTLTYLLIIIYSIAAVSAD------SIHGCGGFVE---------------GSFVI-KVNGPEGWSWNPDKVAVTVD 58 (1150)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~------~~~g~ggfv~---------------G~Y~L-~~~~P~Gw~f~p~~v~v~Vd 58 (1150)
|+-+++++.|+++++++.+..+. +.+-+.|=+. |++.. +...+. -.-.+ +++++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~f~G~I~~~tC~i~~~~~~V~lg~i~~~~~~~~g-~~~~~--~~F~I~ 77 (176)
T PRK15205 1 MKNKRALLPLALLLLTASGMAAPTDLGPAGDIHFTITIKAKACELEKDSLEVDMGTMVLQKPVKVG-TELNQ--KNFSIG 77 (176)
T ss_pred CchHHHHHHHHHHhcchhhhcCCCcccCCeEEEEEEEEEeccceecCCCeEEECCceEhhhcccCC-cccCC--cceEEE
Confidence 78888887777775533332222 2333333332 55544 333332 11122 344444
Q ss_pred CCCcCCcceeeEEEeCceEE--EEEEeecCCccccCCCCCCcceEEEEEeCCC
Q 001120 59 DTGCNGNEDINFRFTGFTLL--GRVVGAIGGESCLDKGGGPSNVNVELLSHSG 109 (1150)
Q Consensus 59 ~~~~s~~~dinf~~~g~~Is--G~V~~~~G~~s~~~~g~plaGv~V~L~~~~g 109 (1150)
-..|.....+.+.|.|..-. +.+..- +.....||-|.|.+.+|
T Consensus 78 L~~C~~~~~v~v~f~G~~~~~~~~ll~l--------~~g~A~GVgI~i~d~~g 122 (176)
T PRK15205 78 LKDCDGISKASVTMDGSPDPDDPSLFAL--------DAGGATGVALKIKTSKG 122 (176)
T ss_pred eccCCCCCeEEEEEeCccCCCCCcEEEc--------cCCCceEEEEEEEcCCC
Confidence 43476545556666553211 223221 11246789998887665
No 155
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=49.02 E-value=82 Score=30.81 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=29.2
Q ss_pred ccCeEEEEcceeeeEeCCCceEEECccCCccEEEEEEecc
Q 001120 289 VEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVH 328 (1150)
Q Consensus 289 laGA~V~l~G~~~~~TD~dG~f~l~~L~pG~Ytv~~~~~~ 328 (1150)
.....|.+||+.+..+...+.+.+ +++||.|+|.++.+-
T Consensus 40 ~~~~~v~vdg~~ig~l~~g~y~~~-~v~pG~h~i~~~~~~ 78 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKNGGYFYV-EVPPGKHTISAKSEF 78 (117)
T ss_pred cccceEEECCEEEEEeCCCeEEEE-EECCCcEEEEEecCc
Confidence 445567789999888655555555 999999999996653
No 156
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=48.96 E-value=90 Score=34.37 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=10.7
Q ss_pred cCCccEEEEEEe
Q 001120 492 VLPGKYRLEVKR 503 (1150)
Q Consensus 492 L~PG~Y~v~~~~ 503 (1150)
+++|.|++++..
T Consensus 162 l~~G~Yt~~V~A 173 (223)
T PRK12813 162 LPNGAYSFVVES 173 (223)
T ss_pred CCCccEEEEEEE
Confidence 889999999974
No 157
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Probab=48.76 E-value=1.2e+02 Score=39.39 Aligned_cols=120 Identities=13% Similarity=-0.048 Sum_probs=68.7
Q ss_pred EeeeeeEEEEEEecCCCCCcccceEEEEeC--CCccccceeecCCceEEEeecCC-cceEEeecc-c----ccccCC---
Q 001120 803 CQKLSQISVRIYSKDDAGEPIPSVLLSLSG--DDGYRNNSVSWAGGSFHFDNLFP-GNFYLRPLL-K----EYAFSP--- 871 (1150)
Q Consensus 803 ~~kl~~i~v~v~~~~~~~~pl~gvllslsg--~~~~r~n~~t~~~G~~~f~~L~P-G~Y~~~~~~-k----ey~~~p--- 871 (1150)
..+++.+.|.+.++++ + +....|.| +..+|--+-.++ =.|--|+| ++|.+.-+- + .|+.--
T Consensus 692 ~~~~AGviV~v~~~dd-~----~~~akv~g~~~~~~~~slg~G~---~~llPl~~Y~~~~vev~da~~s~~~~~~Vt~g~ 763 (895)
T PRK15310 692 GEPASGMAVNVESEGD-E----GSSGKVVSVRGSSQPFSLGFGQ---QSLLLMEGYNATEVTIEDAGVSSQGMAGVKAGG 763 (895)
T ss_pred CCCcceEEEEeccCCC-c----cceEEEecccccceeeeccCCc---eeeEecCCccceeEEEecCCccccceeeecccC
Confidence 3678888888887643 2 66667777 312222221222 23333333 222222211 0 122111
Q ss_pred CceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccCCcEEEEEeCCCceeEEEeeCCCceEEec
Q 001120 872 PAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLR 938 (1150)
Q Consensus 872 ~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~ 938 (1150)
..+...+-+|...-+++.+ .+-|..+|++.+++|.|+.++.+.= +.. +.||+||-|.+.
T Consensus 764 g~~~~fL~PGnl~~~~v~~-~~~~~yiGr~~~~~G~~l~~a~IlN------~~~-~~td~~GgF~~d 822 (895)
T PRK15310 764 GSRRYFLTPGHLLVHNISA-SMSRLYVGRVLDKDGRPLLDAQPLN------YPF-LSLGPSGRFSLQ 822 (895)
T ss_pred CccceEecCCceEEecccE-EEEEEEEEEEECCCCCCcccceeec------Ccc-ceecCCCCEEEE
Confidence 1222355667666666666 6678889999999999999987531 223 889999998775
No 158
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=47.64 E-value=85 Score=34.61 Aligned_cols=13 Identities=38% Similarity=0.800 Sum_probs=10.5
Q ss_pred EcCeeEEEEEEee
Q 001120 397 VPPGEYRLSAMAA 409 (1150)
Q Consensus 397 L~pG~Y~l~~~~~ 409 (1150)
+++|.|++++...
T Consensus 167 lp~G~Yt~~V~A~ 179 (225)
T PRK06655 167 LPDGNYTIKASAS 179 (225)
T ss_pred CCCeeEEEEEEEE
Confidence 7889998888763
No 159
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=47.40 E-value=1.9e+02 Score=30.97 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=30.6
Q ss_pred eeeeeeeCCCeEEEEE--EcCeeEEEEEEeecCCCCCceeeeCceEEEEE
Q 001120 381 KPQVKQTDNNGNFCFE--VPPGEYRLSAMAATPESSSGILFLPPYADVVV 428 (1150)
Q Consensus 381 ~~~~~~Td~dG~f~f~--L~pG~Y~l~~~~~~~~~~~G~~~~p~~~~V~V 428 (1150)
.+....||+.|.-.-. |.||.|++..++ +|| .-.++.+.|
T Consensus 256 pVTsVITnssG~~vTNgqLsaGtYtVTySA------sGY--~DVTqtlvV 297 (301)
T PF06488_consen 256 PVTSVITNSSGNVVTNGQLSAGTYTVTYSA------SGY--ADVTQTLVV 297 (301)
T ss_pred eeEEEEEcCCCcEeecCcccCceEEEEEec------ccc--ccccceEEE
Confidence 3567789999998887 999999999998 686 333444444
No 160
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=46.85 E-value=60 Score=28.45 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=15.7
Q ss_pred CCceEEEeecCCcceEEee
Q 001120 844 AGGSFHFDNLFPGNFYLRP 862 (1150)
Q Consensus 844 ~~G~~~f~~L~PG~Y~~~~ 862 (1150)
.+-.+.|..+.||+|||+-
T Consensus 50 ~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 50 NDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp SEEEEEEEESSSEEEEEEE
T ss_pred CccEEEEEcCCCEEEEEEE
Confidence 3466889999999999974
No 161
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=46.55 E-value=58 Score=29.49 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=30.5
Q ss_pred cCeEEEEcceeeeEeCCCceEEECccCCcc---EEEEEE
Q 001120 290 EGVKILVDGHERSITDRDGYYKLDQVTSNR---YTIEAV 325 (1150)
Q Consensus 290 aGA~V~l~G~~~~~TD~dG~f~l~~L~pG~---Ytv~~~ 325 (1150)
++|++.+||+....++..=+|.=.+|++|. |+|++.
T Consensus 11 adAkl~v~G~~t~~~G~~R~F~T~~L~~G~~y~Y~v~a~ 49 (75)
T TIGR03000 11 ADAKLKVDGKETNGTGTVRTFTTPPLEAGKEYEYTVTAE 49 (75)
T ss_pred CCCEEEECCeEcccCccEEEEECCCCCCCCEEEEEEEEE
Confidence 899999999988888888889999999995 666554
No 162
>KOG3306 consensus Predicted membrane protein [Function unknown]
Probab=46.11 E-value=29 Score=35.94 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=32.7
Q ss_pred eEEEEc-ceee--eEeCCCceEEECccCCccEEEEEEeccccccce
Q 001120 292 VKILVD-GHER--SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKL 334 (1150)
Q Consensus 292 A~V~l~-G~~~--~~TD~dG~f~l~~L~pG~Ytv~~~~~~y~~~~~ 334 (1150)
+.+.+| |... +.|| |+|..++.+.|+|.|++..+.+.+++.
T Consensus 13 ~~liv~~~~f~gF~~td--~sf~~~d~ptgty~V~V~~s~vi~~p~ 56 (185)
T KOG3306|consen 13 ARLIVNGGEFVGFASTD--GSFGSEDSPTGTYRVEVPSSDVIGHPA 56 (185)
T ss_pred eeeEeccceEEEEEeec--cccccccCCceeEEEEecCcceeecce
Confidence 455554 4444 5677 999999999999999999999877765
No 163
>PRK15273 putative fimbrial outer membrane usher protein SteB; Provisional
Probab=45.47 E-value=2.6e+02 Score=37.31 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=78.5
Q ss_pred eeecCCceEEEeecCCcce---EEee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-CcE
Q 001120 840 SVSWAGGSFHFDNLFPGNF---YLRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 913 (1150)
Q Consensus 840 ~~t~~~G~~~f~~L~PG~Y---~~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv~ 913 (1150)
..||..|...+-+|.|=+. .|-+ +..+-+++-+.+.|...+|.-.-+.|...+. ..+.=+++..+|+|+| |+.
T Consensus 683 ~~Td~~G~AvvP~L~pY~~N~i~ID~~~LP~dvei~~t~~~vvPt~GAiv~~~F~~~~g-~~~l~~l~~~dG~~lPfGa~ 761 (881)
T PRK15273 683 TSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSG-EKMMAVFRLADGDFPPFGAE 761 (881)
T ss_pred CeECCCCeEEeCCCCcceeeeEEECCcCCCCCEEeccCEEEEEecCCCEEEEEEEEEee-eEEEEEEEccCCCcCCCceE
Confidence 5799999999999997433 2333 3356778888888999999888788866554 3455678888999886 665
Q ss_pred EEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 914 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 914 v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
|. ++++ ........+|+--|+|+.|....+|+.
T Consensus 762 V~--~~~g--~~~giVg~~G~vyl~g~~~~~~l~V~w 794 (881)
T PRK15273 762 VK--NERQ--QQLGLVADDGNAWLAGVKAGETLKVFW 794 (881)
T ss_pred EE--cCCC--cEEEEEcCCCEEEEecCCCCceEEEEe
Confidence 54 3332 245789999999999999987665544
No 164
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=45.46 E-value=34 Score=28.17 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCCCcccceEEEEeCCCccc
Q 001120 808 QISVRIYSKDDAGEPIPSVLLSLSGDDGYR 837 (1150)
Q Consensus 808 ~i~v~v~~~~~~~~pl~gvllslsg~~~~r 837 (1150)
+|.++|.-.|.+|.|++++-|.|.-+++++
T Consensus 14 ~I~ltVt~kda~G~pv~n~~f~l~r~~~~n 43 (47)
T PF05688_consen 14 TIPLTVTVKDANGNPVPNAPFTLTRGDAKN 43 (47)
T ss_pred eEEEEEEEECCCCCCcCCceEEEEecCccc
Confidence 455555444456999999999999877653
No 165
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=45.45 E-value=83 Score=29.41 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=28.6
Q ss_pred EEEEEeCC--CccccCeEEEE-----cceee----e-EeCCCceEEEC-----ccCCccEEEEEEec
Q 001120 278 GGRVVDEN--DMGVEGVKILV-----DGHER----S-ITDRDGYYKLD-----QVTSNRYTIEAVKV 327 (1150)
Q Consensus 278 ~G~V~d~~--G~plaGA~V~l-----~G~~~----~-~TD~dG~f~l~-----~L~pG~Ytv~~~~~ 327 (1150)
++.+++.+ ..+.++..+.+ +|+.+ . .++++|.|.++ +.+.|.|+|++...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 20 RAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp EEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred EEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 33444443 34555555544 45444 3 56888887663 34569999999874
No 166
>PRK15298 fimbrial outer membrane usher protein StiC; Provisional
Probab=45.01 E-value=1.8e+02 Score=38.60 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=63.2
Q ss_pred EEEeCCCceEEECccCCeeE-EEEEEEecCCeEEEecCceEEEEEeccceeeeccEEE-eceEEEEEEEeCCCcccc-Ce
Q 001120 216 HAVSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 292 (1150)
Q Consensus 216 ~a~TDa~G~f~f~~LppG~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pla-GA 292 (1150)
.+.||..|...+++|.|=.. +|......-+...++.-....+....+.+.+ ..|.+ .+..+--++.+++|+||+ ||
T Consensus 706 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~-~~F~~~~g~~~ll~l~~~~G~~lP~Ga 784 (848)
T PRK15298 706 GVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVR-AAYDTHKGYRVLLTLTRSNGEPVPFGA 784 (848)
T ss_pred CCEECCCCeEEeCCCCccceeeEEECCCCCCCCeEecccEEEecccCCeEEE-EEEEEEeeEEEEEEEECCCCCcCCCCc
Confidence 37999999999999987422 2322111111112222222333333333332 23543 233444567788899885 88
Q ss_pred EEEEcc---eeeeEeCCCceEEECccCC-ccEEEEE
Q 001120 293 KILVDG---HERSITDRDGYYKLDQVTS-NRYTIEA 324 (1150)
Q Consensus 293 ~V~l~G---~~~~~TD~dG~f~l~~L~p-G~Ytv~~ 324 (1150)
.|.+++ ..+...+.+|..-|.++++ +..+++-
T Consensus 785 ~v~~~~~~~~~~g~Vg~~G~vyl~g~~~~~~l~v~w 820 (848)
T PRK15298 785 TASVDGQDANLASIVGDKGQVFLSGLPEEGLLLVNW 820 (848)
T ss_pred EEEEcCCCCeeEEEECCCCEEEEEecCCCceEEEEE
Confidence 887743 2457999999988989986 4555554
No 167
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=44.81 E-value=1.1e+02 Score=30.91 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=36.7
Q ss_pred eceEEEEEEEeCCCccccCeEEEE------c-c--eee-eEeCCCceEEEC--ccCCccEEEEE
Q 001120 273 TGFSVGGRVVDENDMGVEGVKILV------D-G--HER-SITDRDGYYKLD--QVTSNRYTIEA 324 (1150)
Q Consensus 273 ~g~sV~G~V~d~~G~plaGA~V~l------~-G--~~~-~~TD~dG~f~l~--~L~pG~Ytv~~ 324 (1150)
.+..+.-++.|.+|.|+.++.+.+ + . ... ....++|.|+.. .+.+|.|.|++
T Consensus 67 ~~~~~~i~~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~~~~G~W~l~l 130 (146)
T PF05751_consen 67 DDNSLTIRLTDPNGAPVSGAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPLLKKGRWYLRL 130 (146)
T ss_pred cCCeEEEEEEcCCCCcCcCceEEEEEECCCCccCCeeEEeeECCCceEEEEcCCCCCccEEEEE
Confidence 344555577788999999999988 1 1 112 356888988873 45679998887
No 168
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=44.66 E-value=27 Score=34.13 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.0
Q ss_pred ecCCCcEEEcccCCccEEEEEEee
Q 001120 481 TDDSDQFLFRDVLPGKYRLEVKRT 504 (1150)
Q Consensus 481 Td~~G~f~f~~L~PG~Y~v~~~~~ 504 (1150)
.+..-+++|++|+||+|.|.+-+.
T Consensus 39 ~~~~~~~~f~~lp~G~YAi~v~hD 62 (112)
T PF09912_consen 39 KGGTVTITFEDLPPGTYAIAVFHD 62 (112)
T ss_pred CCCcEEEEECCCCCccEEEEEEEe
Confidence 466789999999999999999864
No 169
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=44.15 E-value=30 Score=33.85 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=31.3
Q ss_pred cCCCcEEEcccCCccEEEEEEeecccccccCCCeeEEceEEEEEEecCc
Q 001120 482 DDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTND 530 (1150)
Q Consensus 482 d~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~c~~~~~~~v~V~~~~ 530 (1150)
-..|.|...+|+||+|+|+... +-.+.|..+.+++++.+++
T Consensus 55 l~~g~y~~~~v~pG~h~i~~~~--------~~~~~~~~~~l~~~~~~G~ 95 (117)
T PF11008_consen 55 LKNGGYFYVEVPPGKHTISAKS--------EFSSSPGANSLDVTVEAGK 95 (117)
T ss_pred eCCCeEEEEEECCCcEEEEEec--------CccCCCCccEEEEEEcCCC
Confidence 4689999999999999998863 2123346678888888766
No 170
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=43.86 E-value=1.2e+02 Score=34.16 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=32.0
Q ss_pred CCCcceEEEEEeCCCceEEEEEe--CCCce--EEEcc-------ccCccEEEEEEc
Q 001120 95 GGPSNVNVELLSHSGDLISSVIT--SSEGS--YLFKN-------IIPGKYKLRASH 139 (1150)
Q Consensus 95 ~plaGv~V~L~~~~g~~i~~ttT--d~~G~--f~f~~-------L~pG~Y~l~a~~ 139 (1150)
.+...|+|++++.+|+++++..- -+.|. |.+++ +++|.|++.+.+
T Consensus 138 ~~a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A 193 (259)
T PRK12812 138 EDSDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVY 193 (259)
T ss_pred CcCceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 35567999999999988765432 23454 66666 788999998853
No 171
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=43.23 E-value=41 Score=29.64 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=30.8
Q ss_pred EEEeCCCcccc-CeEEEE-cceeeeEeCCCceEEECccCC-ccEEEEE
Q 001120 280 RVVDENDMGVE-GVKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 324 (1150)
Q Consensus 280 ~V~d~~G~pla-GA~V~l-~G~~~~~TD~dG~f~l~~L~p-G~Ytv~~ 324 (1150)
++.+++|+||+ ||.|.. +|..+...+.+|+.-|.++++ |+.+|.-
T Consensus 2 ~l~~~~G~~lPfGA~v~~~~g~~~g~Vg~~G~vyl~~~~~~~~L~V~w 49 (68)
T PF13953_consen 2 TLRDADGKPLPFGASVSDEDGNNIGIVGQDGQVYLSGLPPKGTLTVKW 49 (68)
T ss_dssp EEEETTSEE--TT-EEEETTSSEEEEB-GCGEEEEEEE-TCEEEEEES
T ss_pred EEEcCCCCcCCCCcEEEcCCCCEEEEEcCCCEEEEECCCCCcEEEEEE
Confidence 45677888876 888887 677888999999999998884 5555553
No 172
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=42.64 E-value=44 Score=28.01 Aligned_cols=26 Identities=46% Similarity=0.662 Sum_probs=21.9
Q ss_pred eeCCCceEEecCCCCCcEEEEEEEEe
Q 001120 928 VTDTSGSYRLRGLHPDTTYVIKVVKK 953 (1150)
Q Consensus 928 ~Td~~G~~~i~gL~Pg~~y~i~~~~~ 953 (1150)
.++.+-.|.|.+|.|+..|.|++.+.
T Consensus 52 ~~~~~~~~~i~~L~~~~~Y~v~v~a~ 77 (83)
T smart00060 52 VTPSSTSYTLTGLKPGTEYEFRVRAV 77 (83)
T ss_pred ecCCccEEEEeCcCCCCEEEEEEEEE
Confidence 34446789999999999999999875
No 173
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=42.59 E-value=70 Score=26.86 Aligned_cols=28 Identities=25% Similarity=0.614 Sum_probs=22.6
Q ss_pred eeeeCCCeEEEEE---EcCeeEEEEEEeecC
Q 001120 384 VKQTDNNGNFCFE---VPPGEYRLSAMAATP 411 (1150)
Q Consensus 384 ~~~Td~dG~f~f~---L~pG~Y~l~~~~~~~ 411 (1150)
..+.+++|.|.+. +..|.|.|.+...+.
T Consensus 5 ~~t~~~~G~Ws~t~~~~~dG~y~itv~a~D~ 35 (54)
T PF13754_consen 5 TTTVDSDGNWSFTVPALADGTYTITVTATDA 35 (54)
T ss_pred EEEECCCCcEEEeCCCCCCccEEEEEEEEeC
Confidence 4567899999997 466999999988654
No 174
>PRK15248 fimbrial outer membrane usher protein StbC; Provisional
Probab=42.47 E-value=2.9e+02 Score=36.73 Aligned_cols=106 Identities=18% Similarity=0.138 Sum_probs=80.1
Q ss_pred eeecCCceEEEeecCCc---ceEEee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-CcE
Q 001120 840 SVSWAGGSFHFDNLFPG---NFYLRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 913 (1150)
Q Consensus 840 ~~t~~~G~~~f~~L~PG---~Y~~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv~ 913 (1150)
..||..|...+-+|.|= +..|-+ +..+.+++-+.+.|.-..|.-..+.|...+. ..+.-++...+|+|+| |+.
T Consensus 710 ~~Td~~G~avVp~L~pY~~N~i~ID~~~LP~dvel~~t~~~vvP~~GAiv~~~F~~~~g-~~~l~~l~~~dG~~lP~Ga~ 788 (853)
T PRK15248 710 AVVDRFGYAILPSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAGAIARVNFATISG-KAVLISVKMPDGGIPPMGAD 788 (853)
T ss_pred CeECCCCeEEeCCCCCceeeeEEECCcCCCCCEEEcccEEeecccCCcEEEEEEEEeec-eEEEEEEEcCCCCcCCCceE
Confidence 57999999999999973 333433 3457888888888999999999998876655 4567788899999876 555
Q ss_pred EEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 914 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 914 v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
|. +.++ ........+|..-|+||.|....+|+.
T Consensus 789 V~--~~~g--~~~g~Vg~~G~vyl~~~~~~~~l~V~w 821 (853)
T PRK15248 789 VF--NGEG--TNIGMVGQSGQIYARIAHPSGSLLVRW 821 (853)
T ss_pred EE--CCCC--cEEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 54 3332 244788999999999999887666655
No 175
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=40.88 E-value=41 Score=32.37 Aligned_cols=48 Identities=23% Similarity=0.524 Sum_probs=33.9
Q ss_pred CCccCCcEEEEEeCC-CceeEEEeeCCCc---eEEecCCCCCcEEEEEEEEec
Q 001120 906 GQPKDGVSVEARSES-KGYYEETVTDTSG---SYRLRGLHPDTTYVIKVVKKD 954 (1150)
Q Consensus 906 g~p~~gv~v~~~~~~-~~~~~~~~Td~~G---~~~i~gL~Pg~~y~i~~~~~~ 954 (1150)
-.|+..|.|.+.+.. ..++++..+...+ .+.|.+|..| .|.|+.....
T Consensus 44 ~~~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G-~Y~l~i~~~~ 95 (106)
T PF11589_consen 44 ESPIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSG-EYTLEITNGN 95 (106)
T ss_dssp SS--SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SE-EEEEEEEECT
T ss_pred cCCCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCc-cEEEEEEeCC
Confidence 468899999999965 4467777777666 8889999888 5999998754
No 176
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=40.73 E-value=4.4e+02 Score=34.56 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=55.1
Q ss_pred eeEEEEEEecCCCCCcccceEEEEeCCCccccceeecCCceEEEeecCCcceEEeecc---cccccCCCceeEEecCCce
Q 001120 807 SQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLL---KEYAFSPPAQAIELGSGES 883 (1150)
Q Consensus 807 ~~i~v~v~~~~~~~~pl~gvllslsg~~~~r~n~~t~~~G~~~f~~L~PG~Y~~~~~~---key~~~p~~~~i~v~~g~~ 883 (1150)
+.++++..-++ -+-|.|..++|.++...-.......++...|.+|+||-|.|++-. +-|+++ ..-+-|++++.
T Consensus 445 ~~~tl~~~idd--~~qi~G~~~~l~dg~~~v~~~~i~~~~~~~~~~v~~GvYtl~~p~G~~~rY~~~--~~YlvV~~~~~ 520 (775)
T PF03272_consen 445 GNVTLTFNIDD--PSQIYGETYSLYDGNKVVYESTITDSTTQLFNDVPPGVYTLRHPRGRNKRYRPD--TNYLVVKETEN 520 (775)
T ss_pred ccEEEEEEcCC--hHHhcCceEEEEcCCeeEEEEEEcCCCceeccCCCCeeEEEEccCCCccccccC--ccEEEEeCCCc
Confidence 66677766543 467889999999886655556777889999999999999998643 346644 77778887754
No 177
>PRK15255 fimbrial outer membrane usher protein StdB; Provisional
Probab=40.19 E-value=2.6e+02 Score=36.99 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=61.7
Q ss_pred EeCCCceEEECccCCee---EEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEE-eceEEEEEEEeCCCcccc-Ce
Q 001120 218 VSDADGKFMFKSVPCGQ---YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 292 (1150)
Q Consensus 218 ~TDa~G~f~f~~LppG~---Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pla-GA 292 (1150)
.||..|...+++|.|=. ..|.+..-+. ..++.-....+....+.+... .|.+ .+..+--++.+++|+||+ ||
T Consensus 690 ~Td~~G~avvP~l~pY~~N~i~ID~~~LP~--dvei~~t~~~VvP~~GAvv~~-~F~~~~g~~~l~~l~~~~G~~lP~Ga 766 (829)
T PRK15255 690 VTNRFGVGVVSAGSSYRRSDISVDVAALPE--DVDVSSSVISQVLTEGAVGYR-KIDASQGEQVLGHIRLADGASPPFGA 766 (829)
T ss_pred ccCCCCEEEeCCCCCceeeeEEECCcCCCC--CEEecccEEEEEecCCCEEEE-EEEEecceEEEEEEEcCCCCcCCCcE
Confidence 49999999999998742 2333311111 122222333344443422221 3442 234455577788999986 78
Q ss_pred EEEEc--ceeeeEeCCCceEEECccCC-c--cEEEE
Q 001120 293 KILVD--GHERSITDRDGYYKLDQVTS-N--RYTIE 323 (1150)
Q Consensus 293 ~V~l~--G~~~~~TD~dG~f~l~~L~p-G--~Ytv~ 323 (1150)
.|..+ |+.+.....+|.--|.+|.+ + +.+++
T Consensus 767 ~V~~~~~g~~~g~Vg~~G~vyl~gl~~~~~~~l~v~ 802 (829)
T PRK15255 767 LVVSGKTGRTAGMVGDDGLAYLTGLSGEDRRTLNVS 802 (829)
T ss_pred EEEcCCCCceeEEEcCCCEEEEECCCCCCCeeEEEE
Confidence 77653 67778999999999999974 4 45554
No 178
>PRK09828 putative fimbrial outer membrane usher protein; Provisional
Probab=40.12 E-value=3.5e+02 Score=36.05 Aligned_cols=106 Identities=18% Similarity=0.045 Sum_probs=79.8
Q ss_pred eeecCCceEEEeecCCcce---EEee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-CcE
Q 001120 840 SVSWAGGSFHFDNLFPGNF---YLRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 913 (1150)
Q Consensus 840 ~~t~~~G~~~f~~L~PG~Y---~~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv~ 913 (1150)
..||..|...+-+|.|=+. .|-| +..+-+++-+.+.|.-.+|.-..++|..++. ..+.=+++..+|+|+| |+.
T Consensus 718 ~~Td~~G~avVP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAvv~~~F~~~~g-~~~ll~l~~~~G~~lP~Ga~ 796 (865)
T PRK09828 718 STIDRWGYGVTSALSPYRENRVALDINTLENDVELKSTSAVAVPRQGAVVLADFETDQG-RSAIMNITRSDGKNIPFAAD 796 (865)
T ss_pred ceeCCCCeEEeCCCCCceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEeecc-eEEEEEEECCCCCcCCCceE
Confidence 4699999999999997443 3433 2356778888888999999999999877665 3455568889999986 555
Q ss_pred EEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 914 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 914 v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
|. +.++ ........+|.--|+||.+.....|+.
T Consensus 797 V~--~~~g--~~~g~Vg~~G~vyl~gl~~~~~l~v~w 829 (865)
T PRK09828 797 VY--DEQG--NVIGNVGQGGQAFVRGIEDQGELRIRW 829 (865)
T ss_pred EE--CCCC--cEEEEEeCCCEEEEEcCCCCceEEEEE
Confidence 54 3332 244788999999999999988777766
No 179
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=40.07 E-value=67 Score=30.32 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=17.5
Q ss_pred EEEcc-ccCccEEEEE---EcCCceEEeeccEEEEE
Q 001120 123 YLFKN-IIPGKYKLRA---SHPNLSVEVRGSTEVEL 154 (1150)
Q Consensus 123 f~f~~-L~pG~Y~l~a---~~~g~~~~~~~~~~V~v 154 (1150)
..+.. |+||.|+|.- +.+|.... +++.|+|
T Consensus 63 ~~l~~~l~~G~YtV~wrvvs~DGH~~~--G~~~F~V 96 (97)
T PF04234_consen 63 VPLPPPLPPGTYTVSWRVVSADGHPVS--GSFSFTV 96 (97)
T ss_dssp EEESS---SEEEEEEEEEEETTSCEEE--EEEEEEE
T ss_pred EECCCCCCCceEEEEEEEEecCCCCcC--CEEEEEE
Confidence 44455 8899999964 45666543 5566655
No 180
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=40.05 E-value=4e+02 Score=34.68 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=56.4
Q ss_pred eEEecCCCCCcEEEEEEEEecCCCCcceeccCCc--eEEEEecCccc---eeceEEEEecCCcEEEEEEEEecccccccc
Q 001120 934 SYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPE--SVTVKVGSGDI---KGLDFLVFEQPEKTILSGHVEGNRIKELNS 1008 (1150)
Q Consensus 934 ~~~i~gL~Pg~~y~i~~~~~~~~~~~~i~~~~p~--~~~v~v~~~d~---~~~~f~~~~~~~~~~i~g~V~~~~~~~~~~ 1008 (1150)
...++||+|-..|+.++.+..+- +..-..-+. .++|+.+.++- -.++.... ....+.|+ =+. + -.|
T Consensus 399 ~V~v~~L~ah~~YTFeV~AvNgV--S~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~-~~~sitls----W~~-p-~~p 469 (996)
T KOG0196|consen 399 SVTVSDLLAHTNYTFEVEAVNGV--SDLSPFPRQFASVNITTNQAAPSPVSVLRQVSR-TSDSITLS----WSE-P-DQP 469 (996)
T ss_pred eEEEeccccccccEEEEEEeecc--cccCCCCCcceeEEeeccccCCCccceEEEeee-ccCceEEe----cCC-C-CCC
Confidence 45799999999999999986432 222222233 34444444443 23333332 11212222 111 1 122
Q ss_pred c---eEEEE--EecCCCCceEEEEeeCCceeEEeecCCCC-cEEEEEEe
Q 001120 1009 H---LLVEI--KSASDTSKVESVISLPMSNFFQVKDLPKG-KHLLQLRS 1051 (1150)
Q Consensus 1009 ~---l~v~l--~~~~~~~~v~~~~~~~~~~~f~~~~l~~~-~y~v~l~s 1051 (1150)
+ +.-|+ +.-..+..-.+ .........++..|.+| .|.+|+..
T Consensus 470 ng~ildYEvky~ek~~~e~~~~-~~~t~~~~~ti~gL~p~t~YvfqVRa 517 (996)
T KOG0196|consen 470 NGVILDYEVKYYEKDEDERSYS-TLKTKTTTATITGLKPGTVYVFQVRA 517 (996)
T ss_pred CCcceeEEEEEeecccccccee-EEecccceEEeeccCCCcEEEEEEEE
Confidence 2 44444 44333433344 22344567888899999 69988875
No 181
>PRK15255 fimbrial outer membrane usher protein StdB; Provisional
Probab=39.95 E-value=3.5e+02 Score=35.87 Aligned_cols=107 Identities=17% Similarity=0.098 Sum_probs=75.7
Q ss_pred eecCCceEEEeecCCcceE---Eee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-CcEE
Q 001120 841 VSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVSV 914 (1150)
Q Consensus 841 ~t~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv~v 914 (1150)
.||..|...+-+|.|=+.- |-+ +..+-+++-+.+.|...+|....+.|...+.. .+.=+|+..+|+|+| |+.|
T Consensus 690 ~Td~~G~avvP~l~pY~~N~i~ID~~~LP~dvei~~t~~~VvP~~GAvv~~~F~~~~g~-~~l~~l~~~~G~~lP~Ga~V 768 (829)
T PRK15255 690 VTNRFGVGVVSAGSSYRRSDISVDVAALPEDVDVSSSVISQVLTEGAVGYRKIDASQGE-QVLGHIRLADGASPPFGALV 768 (829)
T ss_pred ccCCCCEEEeCCCCCceeeeEEECCcCCCCCEEecccEEEEEecCCCEEEEEEEEecce-EEEEEEEcCCCCcCCCcEEE
Confidence 5999999999999974433 433 23567777788888999998888887766553 345578889999987 6665
Q ss_pred EEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEEE
Q 001120 915 EARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVV 951 (1150)
Q Consensus 915 ~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~~ 951 (1150)
. .++++ ........+|.--|+||.|...-.+.++
T Consensus 769 ~-~~~~g--~~~g~Vg~~G~vyl~gl~~~~~~~l~v~ 802 (829)
T PRK15255 769 V-SGKTG--RTAGMVGDDGLAYLTGLSGEDRRTLNVS 802 (829)
T ss_pred E-cCCCC--ceeEEEcCCCEEEEECCCCCCCeeEEEE
Confidence 4 22222 2447889999999999986432234444
No 182
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=39.40 E-value=1.7e+02 Score=29.05 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=33.4
Q ss_pred ceeecCCceEEEeecCCcc-eEEeecccccccCCCceeEEecCCceEEEEEEEEee
Q 001120 839 NSVSWAGGSFHFDNLFPGN-FYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRV 893 (1150)
Q Consensus 839 n~~t~~~G~~~f~~L~PG~-Y~~~~~~key~~~p~~~~i~v~~g~~~~v~~~~~r~ 893 (1150)
+..|+++|.+.+..=.+.. -.+..-+.++.-.|.. |+|.+++++.|.|+-+--
T Consensus 51 ~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~--Vtl~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 51 TATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKE--VTLPPNESKTVTFTIKMP 104 (121)
T ss_pred eeEecCCEEEEECCCCcccCcccCcchHHhccCCcE--EEECCCCEEEEEEEEEcC
Confidence 3589999999886655543 2232223333322333 999999999987765544
No 183
>PRK15193 outer membrane usher protein; Provisional
Probab=38.87 E-value=2.3e+02 Score=37.75 Aligned_cols=105 Identities=14% Similarity=0.185 Sum_probs=62.3
Q ss_pred EEEeCCCceEEECccCCe---eEEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEEe-ceEEEEEEEeCCCcccc-
Q 001120 216 HAVSDADGKFMFKSVPCG---QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE- 290 (1150)
Q Consensus 216 ~a~TDa~G~f~f~~LppG---~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pla- 290 (1150)
...||..|...+++|.|= ++.|.+..-+. ..++.-....+....+.+.+. .|.+. +..+-=++ +.+|+||+
T Consensus 734 ~~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~--dvel~~t~~~VvPt~GAvv~~-~F~~~~g~~~ll~l-~~~G~plPf 809 (876)
T PRK15193 734 GLKTDWRGYAVVPYATSYRENRIALDAASLKD--NVDLENAVVNVVPTKGALVLA-EFNAHVGARALMTL-SHQGIPLPF 809 (876)
T ss_pred CCeECCCCeEEECCCCccccceEEECCCCCCC--CeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEE-ccCCcCCCC
Confidence 379999999999998873 23333321111 122222333344444443332 34432 22333344 44799985
Q ss_pred CeEEEE-cceeeeEeCCCceEEECccCC-ccEEEEE
Q 001120 291 GVKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 324 (1150)
Q Consensus 291 GA~V~l-~G~~~~~TD~dG~f~l~~L~p-G~Ytv~~ 324 (1150)
|+.|.. +|+.+...+.+|..-|.+|++ |..+|+-
T Consensus 810 Ga~V~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v~w 845 (876)
T PRK15193 810 GATVTLDDQHNSGIVDDDGSVYLSGLPAQGVLHVRW 845 (876)
T ss_pred ceEEECCCCceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 777765 566778999999999999986 5666654
No 184
>PRK15198 outer membrane usher protein FimD; Provisional
Probab=38.72 E-value=2.4e+02 Score=37.54 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=62.2
Q ss_pred EEEeCCCceEEECccCCee---EEEEEEEecCCeEEEecCceEEEEEeccceeeeccEEEe-ceEEEEEEEeCCCcccc-
Q 001120 216 HAVSDADGKFMFKSVPCGQ---YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE- 290 (1150)
Q Consensus 216 ~a~TDa~G~f~f~~LppG~---Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pla- 290 (1150)
.+.||..|...++.|.|=. ..|.+..-+. ..++.-....+....+.+.+. .|.+. +..+--++.. +|+||+
T Consensus 714 ~~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~--nvei~~t~~~vvPt~GAvv~v-~F~~~~g~~~ll~~~~-~G~~lP~ 789 (860)
T PRK15198 714 GVKTDWRGYAVMPYATVYRYNRVALDTNTMGN--STDVENNVSSVVPTQGALVRA-NFDTRIGVRALITVTQ-GGKPVPF 789 (860)
T ss_pred CCEECCCCeEEeCCCCcceeeeEEECCcCCCC--CeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEEcc-CCCCCCC
Confidence 3799999999999988632 3333321111 122222333344444443332 35432 2333334444 688886
Q ss_pred CeEEEE-cceeeeEeCCCceEEECccCC-ccEEEEE
Q 001120 291 GVKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 324 (1150)
Q Consensus 291 GA~V~l-~G~~~~~TD~dG~f~l~~L~p-G~Ytv~~ 324 (1150)
|+.|.. +|..+...+.+|..-|.+|++ |..+|+.
T Consensus 790 Ga~V~~~~~~~~g~Vg~~G~vyl~gl~~~~~l~v~w 825 (860)
T PRK15198 790 GALVRETSSGITSMVGDDGQIYLSGLPLSGELLIQW 825 (860)
T ss_pred ceEEECCCCcEEEEECCCCEEEEEcCCCCceEEEEE
Confidence 777765 566778999999999999986 5666654
No 185
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=38.28 E-value=1.8e+02 Score=31.93 Aligned_cols=44 Identities=14% Similarity=0.352 Sum_probs=28.0
Q ss_pred CCCcceEEEEEeCCCceEEEEE--eCCCce--EEEcc----ccCccEEEEEEc
Q 001120 95 GGPSNVNVELLSHSGDLISSVI--TSSEGS--YLFKN----IIPGKYKLRASH 139 (1150)
Q Consensus 95 ~plaGv~V~L~~~~g~~i~~tt--Td~~G~--f~f~~----L~pG~Y~l~a~~ 139 (1150)
.+...|+|++++.+|++ .+.. ....|. |.+++ +++|.|++.+..
T Consensus 120 ~~a~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a 171 (218)
T PRK09619 120 HPAPTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVS 171 (218)
T ss_pred CcCcEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEE
Confidence 45666888888888875 3332 123454 44444 788999988753
No 186
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=37.84 E-value=3.3e+02 Score=25.27 Aligned_cols=49 Identities=35% Similarity=0.590 Sum_probs=34.0
Q ss_pred CceEEEEEEeecCCccccCCCCCCcceEEEEEeCCC--ceEEEEEeCCCceEEEcccc--CccEEE
Q 001120 74 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG--DLISSVITSSEGSYLFKNII--PGKYKL 135 (1150)
Q Consensus 74 g~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g--~~i~~ttTd~~G~f~f~~L~--pG~Y~l 135 (1150)
.|.|+|++... ..|..|.|....+ ..+.++... +|+|+|..-. |+.|.|
T Consensus 12 ~~~I~G~i~~~------------~~~~~vyL~~~~~~~~~~ds~~v~-nG~F~f~~~~~~p~~~~l 64 (106)
T PF14289_consen 12 QFTIEGKIKGL------------PDGDKVYLYYYDNGKVVIDSVVVK-NGKFSFKGPLDEPGFYYL 64 (106)
T ss_pred cEEEEEEEcCC------------CCCCEEEEEEeCCCCEEEEEEEEe-CCEEEEEEeCCCCEEEEE
Confidence 56789988642 3456787876643 345666666 9999999654 667888
No 187
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=37.56 E-value=42 Score=28.74 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=22.4
Q ss_pred EEeCCCceEEEEEeCCCceEEEccccCccEEE
Q 001120 104 LLSHSGDLISSVITSSEGSYLFKNIIPGKYKL 135 (1150)
Q Consensus 104 L~~~~g~~i~~ttTd~~G~f~f~~L~pG~Y~l 135 (1150)
+.+-.|..-.+.+||++|.-.|. ++|+.|.+
T Consensus 25 ~~D~tGn~~~~vtid~dG~~~f~-v~~~s~SV 55 (57)
T PF09154_consen 25 FYDYTGNSSETVTIDEDGWGEFP-VPPGSVSV 55 (57)
T ss_dssp EEETTSSSSSEEEE-TTSEEEEE-E-TTEEEE
T ss_pred EEEccCCCCCeEEECCCeEEEEE-ECCCEEEE
Confidence 34555544457889999999999 99999876
No 188
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.41 E-value=85 Score=33.42 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=39.2
Q ss_pred CCcceEEEEEeCCCceEEEEEeCCCceEEEccccCccEEEEEEcC
Q 001120 96 GPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHP 140 (1150)
Q Consensus 96 plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~ 140 (1150)
+-.|+.+++..++|+.+....-++.|+|+|.--.+|.|++=...+
T Consensus 53 g~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~ 97 (201)
T KOG1692|consen 53 GFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNK 97 (201)
T ss_pred CccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCC
Confidence 667899999999998888888888999999988999999987654
No 189
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=37.34 E-value=74 Score=35.23 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=30.4
Q ss_pred CCCcceEEEEEeCCCceEEEEE--eCCCceEEE--cc-------ccCccEEEEEEc
Q 001120 95 GGPSNVNVELLSHSGDLISSVI--TSSEGSYLF--KN-------IIPGKYKLRASH 139 (1150)
Q Consensus 95 ~plaGv~V~L~~~~g~~i~~tt--Td~~G~f~f--~~-------L~pG~Y~l~a~~ 139 (1150)
.+...|+|++++.+|+++++.. .-..|.+.| ++ +++|.|++.+.+
T Consensus 126 ~~a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a 181 (230)
T PRK12633 126 GDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSA 181 (230)
T ss_pred CcCcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 4566788889888888776543 234564444 33 678899888754
No 190
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=37.08 E-value=58 Score=27.89 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=18.7
Q ss_pred eeeeeCCCeEEEEEEcCeeEEEE
Q 001120 383 QVKQTDNNGNFCFEVPPGEYRLS 405 (1150)
Q Consensus 383 ~~~~Td~dG~f~f~L~pG~Y~l~ 405 (1150)
.+.++|+||.-.|.++|+.|.+-
T Consensus 34 ~~vtid~dG~~~f~v~~~s~SVW 56 (57)
T PF09154_consen 34 ETVTIDEDGWGEFPVPPGSVSVW 56 (57)
T ss_dssp SEEEE-TTSEEEEEE-TTEEEEE
T ss_pred CeEEECCCeEEEEEECCCEEEEe
Confidence 57899999999999999999873
No 191
>COG1470 Predicted membrane protein [Function unknown]
Probab=36.91 E-value=8.7e+02 Score=29.73 Aligned_cols=100 Identities=20% Similarity=0.317 Sum_probs=49.7
Q ss_pred CCceEEEeec-CCcceEEeecccccccCCCceeEEecCCceEEEEEEEEeee------EeEEEeeEcCCCCccCCcEEEE
Q 001120 844 AGGSFHFDNL-FPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVA------YSATGTITLLSGQPKDGVSVEA 916 (1150)
Q Consensus 844 ~~G~~~f~~L-~PG~Y~~~~~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~------~s~~G~v~~~~g~p~~gv~v~~ 916 (1150)
.+-.+.++.+ .|=-|..+...-||+. ..+.+++|++..|.+.-++.+ |.+.=.+.+-++ -.....++|
T Consensus 298 ~~d~y~Le~~g~pe~w~~~Fteg~~~v----t~vkL~~gE~kdvtleV~ps~na~pG~Ynv~I~A~s~s~-v~~e~~lki 372 (513)
T COG1470 298 QDDEYALELSGLPEGWTAEFTEGELRV----TSVKLKPGEEKDVTLEVYPSLNATPGTYNVTITASSSSG-VTRELPLKI 372 (513)
T ss_pred CCceeEEEeccCCCCcceEEeeCceEE----EEEEecCCCceEEEEEEecCCCCCCCceeEEEEEecccc-ceeeeeEEE
Confidence 3334444444 3333433333444552 347899999999988877763 433222222221 111222233
Q ss_pred EeCCCceeEEEeeCCCceEEecCCCCCcEEEEEEE
Q 001120 917 RSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVV 951 (1150)
Q Consensus 917 ~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~~ 951 (1150)
.. .+..++..+=.+|.|++..= ||....|+..
T Consensus 373 ~~--~g~~~~~v~l~~g~~~lt~t-aGee~~i~i~ 404 (513)
T COG1470 373 KN--TGSYNELVKLDNGPYRLTIT-AGEEKTIRIS 404 (513)
T ss_pred Ee--ccccceeEEccCCcEEEEec-CCccceEEEE
Confidence 21 12234455556677776654 6666665555
No 192
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=35.94 E-value=67 Score=36.77 Aligned_cols=43 Identities=16% Similarity=0.467 Sum_probs=31.6
Q ss_pred CCcceEEEEEeCCCceEEEEEeC----CCce--EEEcc-------ccCccEEEEEE
Q 001120 96 GPSNVNVELLSHSGDLISSVITS----SEGS--YLFKN-------IIPGKYKLRAS 138 (1150)
Q Consensus 96 plaGv~V~L~~~~g~~i~~ttTd----~~G~--f~f~~-------L~pG~Y~l~a~ 138 (1150)
....|+|++++.+|+++++..-+ ..|. |.+++ +++|.|++++.
T Consensus 164 ~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~ 219 (295)
T PRK05842 164 SKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAE 219 (295)
T ss_pred cCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEE
Confidence 34579999999999988765433 3475 55554 78899999875
No 193
>PF13115 YtkA: YtkA-like
Probab=35.24 E-value=1e+02 Score=28.04 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=26.1
Q ss_pred EeCCCccccCeEEEE-----c--cee-----ee-EeCCCceEEECcc--CCccEEEEE
Q 001120 282 VDENDMGVEGVKILV-----D--GHE-----RS-ITDRDGYYKLDQV--TSNRYTIEA 324 (1150)
Q Consensus 282 ~d~~G~plaGA~V~l-----~--G~~-----~~-~TD~dG~f~l~~L--~pG~Ytv~~ 324 (1150)
.+.+|+|+.+|.|.+ + |.. .. .....|.|...-. .+|.|.|++
T Consensus 28 ~~~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m~G~W~i~v 85 (86)
T PF13115_consen 28 VDQGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFSMAGTWQITV 85 (86)
T ss_pred ECCCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecCCCeeEEEEE
Confidence 566899999999988 2 211 11 2236677766411 356776654
No 194
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=35.14 E-value=81 Score=28.59 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=38.9
Q ss_pred EEEeeCCCceEEecCCCCCcEEEEEEEEecCC-CCcceeccCCceEEEEecCccceeceE
Q 001120 925 EETVTDTSGSYRLRGLHPDTTYVIKVVKKDGF-GSTKIERASPESVTVKVGSGDIKGLDF 983 (1150)
Q Consensus 925 ~~~~Td~~G~~~i~gL~Pg~~y~i~~~~~~~~-~~~~i~~~~p~~~~v~v~~~d~~~~~f 983 (1150)
+...+...=+|+-++|.+|-.|.-++++.-.. | |..+...+|.+...|...++|
T Consensus 21 ~t~~~G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG-----~~~t~~~~V~vrAGd~~~v~f 75 (75)
T TIGR03000 21 ETNGTGTVRTFTTPPLEAGKEYEYTVTAEYDRDG-----RILTRTRTVVVRAGDTVTVDF 75 (75)
T ss_pred EcccCccEEEEECCCCCCCCEEEEEEEEEEecCC-----cEEEEEEEEEEcCCceEEeeC
Confidence 44456666689999999999888777763211 2 335678888888888887776
No 195
>PRK15193 outer membrane usher protein; Provisional
Probab=34.82 E-value=4.7e+02 Score=34.90 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=77.8
Q ss_pred cceeecCCceEEEeecCCc---ceEEee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-C
Q 001120 838 NNSVSWAGGSFHFDNLFPG---NFYLRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-G 911 (1150)
Q Consensus 838 ~n~~t~~~G~~~f~~L~PG---~Y~~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-g 911 (1150)
....||..|...+-+|.|= +..|-| +..+.+++-+.+.|.-.+|.-..++|...+..-- .=+++ .+|+|+| |
T Consensus 733 ~~~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~dvel~~t~~~VvPt~GAvv~~~F~~~~g~~~-ll~l~-~~G~plPfG 810 (876)
T PRK15193 733 TGLKTDWRGYAVVPYATSYRENRIALDAASLKDNVDLENAVVNVVPTKGALVLAEFNAHVGARA-LMTLS-HQGIPLPFG 810 (876)
T ss_pred CCCeECCCCeEEECCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEEEEEEEeeeeEE-EEEEc-cCCcCCCCc
Confidence 3468999999999999973 333444 3456888888888999999999999987766432 33454 4899986 5
Q ss_pred cEEEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 912 VSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 912 v~v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
+.|. ++++ ........+|.--|+||.|.....|+.
T Consensus 811 a~V~--~~~g--~~~g~Vg~~G~vyl~gl~~~~~l~v~w 845 (876)
T PRK15193 811 ATVT--LDDQ--HNSGIVDDDGSVYLSGLPAQGVLHVRW 845 (876)
T ss_pred eEEE--CCCC--ceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 5554 3332 245789999999999999887665554
No 196
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=33.96 E-value=2.1e+02 Score=31.76 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=10.6
Q ss_pred EcCeeEEEEEEee
Q 001120 397 VPPGEYRLSAMAA 409 (1150)
Q Consensus 397 L~pG~Y~l~~~~~ 409 (1150)
+++|.|++++...
T Consensus 170 ~~~G~Y~~~V~a~ 182 (230)
T PRK12633 170 LADGKYSITVSAS 182 (230)
T ss_pred CCCcceEEEEEEE
Confidence 7889999988764
No 197
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=33.71 E-value=4.7e+02 Score=31.15 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=51.8
Q ss_pred CceEEEeecCCcceEEeecccccccCCCceeEEecCCc----eEEEEEEEEee-----eEeEEEeeEcCCCCccCCcEEE
Q 001120 845 GGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGE----SREVIFQATRV-----AYSATGTITLLSGQPKDGVSVE 915 (1150)
Q Consensus 845 ~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~g~----~~~v~~~~~r~-----~~s~~G~v~~~~g~p~~gv~v~ 915 (1150)
-|.+.+.=..-|.-|.|....+....|.+..+++...+ ...+.+.+... .-.+.+++..++|. ..+.
T Consensus 183 ~G~Y~~~v~~~n~vF~R~~~q~v~V~p~Pi~~~~~~~~~~~~~h~l~v~~d~~~i~~~s~~~~~~~~~P~g~----~~~~ 258 (374)
T TIGR03503 183 PGEYRPTYQSRNPVFLREVEQPVLVYPLPVSYTVIQSEDESGAHQLMVDADAGHIDPGSLVIHGELVFPNGQ----IQQF 258 (374)
T ss_pred CceEEEEEEEcCceEEEEEEEeEEEECCCeeEEEEccCCCCCceEEEEEcccceeccccEEEEEEEECCCCc----eEEe
Confidence 44444444444444455555566677888887776653 35677776653 45578889999886 2233
Q ss_pred EEeCC--CceeEEEeeCCCceEEecCC
Q 001120 916 ARSES--KGYYEETVTDTSGSYRLRGL 940 (1150)
Q Consensus 916 ~~~~~--~~~~~~~~Td~~G~~~i~gL 940 (1150)
..+.. ..........+.|+|++.|=
T Consensus 259 ~~~~~~~~~~~~l~~~~~~G~Y~i~~~ 285 (374)
T TIGR03503 259 SIELEEPETRVDLPANYEFGKYRVKGT 285 (374)
T ss_pred cccCccCceEEeccCcCCCeEEEEEEE
Confidence 33322 22233333456666666553
No 198
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=33.62 E-value=5.5e+02 Score=33.94 Aligned_cols=105 Identities=17% Similarity=0.094 Sum_probs=78.2
Q ss_pred eeecCCceEEEeecCCcceE---Eee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-CcE
Q 001120 840 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 913 (1150)
Q Consensus 840 ~~t~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv~ 913 (1150)
..||..|...+-+|.|=+.- |-+ +..+.+++-+.+.|.-.+|.-.-+.|...+. ..+.=+++..+|+|+| |+.
T Consensus 659 v~Td~~G~AvvP~l~pY~~N~i~id~~~Lp~dvel~~t~~~VvPt~GAvv~v~F~~~~g-~~~l~~l~~~~G~~lPfGa~ 737 (801)
T PRK15304 659 VWTDFWGQAVIPGLTEWRKSRVEVNTNTLPKNMDLANGTKMIKAAHGAVSKVDFSVLNQ-RRVMLNVKRADGSPLPKGVS 737 (801)
T ss_pred eEECCCCeEEeCCCCCceeeeEEECccCCCCCEEEccCEEEEEeCCCcEEEEEEEEccc-eEEEEEEEccCCCcCCCcEE
Confidence 37999999999999985443 333 3457888888888999999999998877654 4456678888999987 554
Q ss_pred EEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEE
Q 001120 914 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIK 949 (1150)
Q Consensus 914 v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~ 949 (1150)
|. ++++ ........+|.--|+||.|....+|+
T Consensus 738 V~--~~~g--~~~g~Vg~~G~vyl~g~~~~~~l~v~ 769 (801)
T PRK15304 738 IV--DEKG--NYLTSAVDDGRVFLNDIDDIPALYAK 769 (801)
T ss_pred EE--CCCC--cEEEEEeCCCEEEEECCCCCceEEEE
Confidence 43 3332 24467888999999999988765554
No 199
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=32.95 E-value=3.3e+02 Score=23.64 Aligned_cols=27 Identities=19% Similarity=0.554 Sum_probs=21.0
Q ss_pred EEEecCCCcEEEcccCCcc-EEEEEEee
Q 001120 478 VSLTDDSDQFLFRDVLPGK-YRLEVKRT 504 (1150)
Q Consensus 478 ~~~Td~~G~f~f~~L~PG~-Y~v~~~~~ 504 (1150)
..+......|.+.+|.||+ |.+++...
T Consensus 49 ~~~~~~~~~~~i~~L~p~t~Y~~~v~a~ 76 (85)
T PF00041_consen 49 VTVPGNETSYTITGLQPGTTYEFRVRAV 76 (85)
T ss_dssp EEEETTSSEEEEESCCTTSEEEEEEEEE
T ss_pred eeeeeeeeeeeeccCCCCCEEEEEEEEE
Confidence 3444555599999999999 99999753
No 200
>PRK15213 fimbrial outer membrane usher protein PefC; Provisional
Probab=32.94 E-value=5.9e+02 Score=33.58 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=78.6
Q ss_pred ceeecCCceEEEeecCCcce---EEee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-Cc
Q 001120 839 NSVSWAGGSFHFDNLFPGNF---YLRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 912 (1150)
Q Consensus 839 n~~t~~~G~~~f~~L~PG~Y---~~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-gv 912 (1150)
...||..|...+- |.|=+. .|-+ +..+.+++-..+.|.-.+|.-..+.|..++. ..+.=+++..+|+|+| |+
T Consensus 665 ~~~Td~~G~alVP-l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~gAvv~~~F~~~~g-~~~ll~l~~~~G~~lP~Ga 742 (797)
T PRK15213 665 SGPTDSKGNTVVP-LSSYDLNTVTVNAENLPLNTELTTTSQNVVPTDKAVVYREFKALKV-LRYILRVKQKDGRFVPGGS 742 (797)
T ss_pred CcEECCCCeEEEe-CCCceeeeEEECccCCCCCEEecccEEEEEecCCcEEEEEEEEEee-eEEEEEEEccCCCcCCCCe
Confidence 4579999999999 986333 2333 3457888888888999999999999987755 4566678899999986 55
Q ss_pred EEEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEE
Q 001120 913 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIK 949 (1150)
Q Consensus 913 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~ 949 (1150)
.| .+.++ ........+|.--|+||.+....+|.
T Consensus 743 ~v--~~~~g--~~~g~Vg~~G~vyl~gl~~~~~l~v~ 775 (797)
T PRK15213 743 WA--RNEQG--TPLGFVANNGVLLMNLLDAPGDISVG 775 (797)
T ss_pred EE--ECCCC--cEEEEEcCCCEEEEEcCCCCCEEEEE
Confidence 55 33332 24578899999999999987766663
No 201
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=32.86 E-value=1.9e+02 Score=31.69 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=10.9
Q ss_pred EcCeeEEEEEEee
Q 001120 397 VPPGEYRLSAMAA 409 (1150)
Q Consensus 397 L~pG~Y~l~~~~~ 409 (1150)
|++|.|++++...
T Consensus 160 lp~G~Y~~~V~a~ 172 (218)
T PRK09619 160 LQPGQYQLSVVSG 172 (218)
T ss_pred CCCceeEEEEEEe
Confidence 7899999999753
No 202
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=31.95 E-value=95 Score=34.17 Aligned_cols=44 Identities=23% Similarity=0.518 Sum_probs=30.0
Q ss_pred CCcceEEEEEeCCCceEEEEE--eCCCce--EEEcc-------ccCccEEEEEEc
Q 001120 96 GPSNVNVELLSHSGDLISSVI--TSSEGS--YLFKN-------IIPGKYKLRASH 139 (1150)
Q Consensus 96 plaGv~V~L~~~~g~~i~~tt--Td~~G~--f~f~~-------L~pG~Y~l~a~~ 139 (1150)
+...|+|++++.+|+++++.. .-+.|. |.+++ +++|.|++.+.+
T Consensus 120 ~a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a 174 (221)
T PRK12634 120 SAGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQ 174 (221)
T ss_pred cCCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 345689999999998776542 334566 55554 677888887743
No 203
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=31.74 E-value=71 Score=41.00 Aligned_cols=54 Identities=30% Similarity=0.399 Sum_probs=44.2
Q ss_pred cCCCCceEEEEEeccchhhhhccccceeEEEEeCCCceEEec-cCCCCceEEEEEeCCCeEEeee
Q 001120 733 SPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGG-PLYDDITYNVEASKPGYYLRQV 796 (1150)
Q Consensus 733 ~p~l~gv~i~i~~~~~~~~~~~~~~~~~~~~~Td~~G~f~~g-pL~~~~~y~v~a~k~gy~l~~~ 796 (1150)
.-||+++.|.|+... ..+.+.+|+.||.-.+. |-+.+...+|+|+|+||+....
T Consensus 13 ~qpl~~A~V~V~~N~----------t~~~s~~t~~dG~~~l~~~yrlg~~l~v~a~k~gyv~ns~ 67 (807)
T PF10577_consen 13 RQPLSDASVEVFGNQ----------TLTASGTTGNDGVVLLKFPYRLGTWLIVTASKDGYVPNSV 67 (807)
T ss_pred cccCCCCeEEEEece----------eEeecceecCCceEEEEEeccCCCeEEEEEecCCccCCCC
Confidence 367999999998643 46788999999997765 4446789999999999999875
No 204
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=31.17 E-value=1.7e+02 Score=27.46 Aligned_cols=82 Identities=20% Similarity=0.279 Sum_probs=47.7
Q ss_pred cCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccCCcEEEEE-eCC-CceeEEEeeCCCceEEecCCCCCcEE
Q 001120 869 FSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEAR-SES-KGYYEETVTDTSGSYRLRGLHPDTTY 946 (1150)
Q Consensus 869 ~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~gv~v~~~-~~~-~~~~~~~~Td~~G~~~i~gL~Pg~~y 946 (1150)
+.|+...+... +....|.|..-+..+...+.-.++- .-.+...+.+. ..+ ...........+-.+.|++|.||..|
T Consensus 3 lgPP~v~v~~~-~~~l~V~i~~P~~~~~~~~~~~~l~-~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y 80 (106)
T PF09294_consen 3 LGPPSVNVSSC-GGSLHVTIKPPMTPLRAGGKNSSLR-DIYPSLSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNY 80 (106)
T ss_dssp E-SSEEEEEEE-TTEEEEEEEESEEEEECSSSEEEHH-HHHGG-EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEE
T ss_pred ecCCEEEEEEC-CCEEEEEEECCCcccccCCCCCcHH-HhCCCeEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCE
Confidence 56777666443 4577888887776652222222111 11225566665 333 22355556667777899999999999
Q ss_pred EEEEEE
Q 001120 947 VIKVVK 952 (1150)
Q Consensus 947 ~i~~~~ 952 (1150)
=|++.+
T Consensus 81 Cv~V~~ 86 (106)
T PF09294_consen 81 CVSVQA 86 (106)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 205
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.13 E-value=2.9e+02 Score=30.18 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=35.2
Q ss_pred cceEEEEEeCCCceEEEEEeCCCceEEEccccCccEEEEEEc
Q 001120 98 SNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASH 139 (1150)
Q Consensus 98 aGv~V~L~~~~g~~i~~ttTd~~G~f~f~~L~pG~Y~l~a~~ 139 (1150)
-.+.++|.++.|.++-...-.++|.++++--++|.|.+=...
T Consensus 71 l~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~CfDN 112 (236)
T KOG3287|consen 71 LDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVCFDN 112 (236)
T ss_pred cceeeEEeCCCccEEeecccccCceeEeeccCCcceEEEEcC
Confidence 347888999989877777788999999997799999998754
No 206
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=30.85 E-value=84 Score=30.66 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=19.4
Q ss_pred CCCceEEEccccCccEEEEEEcC
Q 001120 118 SSEGSYLFKNIIPGKYKLRASHP 140 (1150)
Q Consensus 118 d~~G~f~f~~L~pG~Y~l~a~~~ 140 (1150)
+..-.+.|.+|+||+|.|.+-|+
T Consensus 40 ~~~~~~~f~~lp~G~YAi~v~hD 62 (112)
T PF09912_consen 40 GGTVTITFEDLPPGTYAIAVFHD 62 (112)
T ss_pred CCcEEEEECCCCCccEEEEEEEe
Confidence 44558999999999999998774
No 207
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.61 E-value=1.8e+02 Score=29.36 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.3
Q ss_pred eeecCCceEEEeecCCcceEEeec
Q 001120 840 SVSWAGGSFHFDNLFPGNFYLRPL 863 (1150)
Q Consensus 840 ~~t~~~G~~~f~~L~PG~Y~~~~~ 863 (1150)
.+|.+-=++.|.+|.||+|-|++.
T Consensus 71 sit~dpv~~~f~~Lk~G~YAvaa~ 94 (151)
T COG4704 71 SITGDPVSKSFYGLKPGKYAVAAF 94 (151)
T ss_pred cccCCchhheeecCCCccEEEEEE
Confidence 567777789999999999999874
No 208
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.37 E-value=1.3e+02 Score=32.26 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=34.2
Q ss_pred CCcceEEEEEeCCCc--eEEEEEeCCCceEEEccccCccEEEEEE--cCCceEE
Q 001120 96 GPSNVNVELLSHSGD--LISSVITSSEGSYLFKNIIPGKYKLRAS--HPNLSVE 145 (1150)
Q Consensus 96 plaGv~V~L~~~~g~--~i~~ttTd~~G~f~f~~L~pG~Y~l~a~--~~g~~~~ 145 (1150)
|=-|+.|++.+..++ ++-+-.=.++|+|+|..+.||.|+|=.. ..+|...
T Consensus 63 p~~gm~VeV~e~fdnnh~Vl~q~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~ 116 (215)
T KOG1690|consen 63 PNIGMHVEVKETFDNNHVVLSQQYSSEGDFTFTALTPGEHRICIQSNSTAWFNG 116 (215)
T ss_pred CCceEEEEeecCCCCceEEEeecCCCCCceEEEccCCCceEEEEecccchhhcc
Confidence 444566666544433 5656667799999999999999998653 3466543
No 209
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=30.08 E-value=2e+02 Score=26.45 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=31.2
Q ss_pred CcceEEEEEeCCCceEEEEEeCCCceEEEcccc-----CccEEEEEEcCCceEE
Q 001120 97 PSNVNVELLSHSGDLISSVITSSEGSYLFKNII-----PGKYKLRASHPNLSVE 145 (1150)
Q Consensus 97 laGv~V~L~~~~g~~i~~ttTd~~G~f~f~~L~-----pG~Y~l~a~~~g~~~~ 145 (1150)
.+|+.|.|. .+|.......++ +|.+.+. ++ +|.|.|.+.+-.|...
T Consensus 25 ~~gs~ValS-~dg~l~G~ai~~-sG~ati~-l~~~it~~~~~tlTit~~n~~t~ 75 (81)
T PF03785_consen 25 VPGSYVALS-QDGDLYGKAIVN-SGNATIN-LTNPITDEGTLTLTITAFNYVTY 75 (81)
T ss_dssp STT-EEEEE-ETTEEEEEEE-B-TTEEEEE--SS--TT-SEEEEEEE-TTB--E
T ss_pred CCCcEEEEe-cCCEEEEEEEec-CceEEEE-CCcccCCCceEEEEEEEEccEEE
Confidence 467788775 467778889999 9999987 66 6899999988777543
No 210
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=29.72 E-value=1.7e+02 Score=26.99 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=26.6
Q ss_pred ccCeEEEE--cceee--eEeCCCceEEECccC-----CccEEEEEEecccc
Q 001120 289 VEGVKILV--DGHER--SITDRDGYYKLDQVT-----SNRYTIEAVKVHYK 330 (1150)
Q Consensus 289 laGA~V~l--~G~~~--~~TD~dG~f~l~~L~-----pG~Ytv~~~~~~y~ 330 (1150)
.+|+.|.| ||.-. +.++ .|.+.+ +|+ +|.|+|.+.+-.|.
T Consensus 25 ~~gs~ValS~dg~l~G~ai~~-sG~ati-~l~~~it~~~~~tlTit~~n~~ 73 (81)
T PF03785_consen 25 VPGSYVALSQDGDLYGKAIVN-SGNATI-NLTNPITDEGTLTLTITAFNYV 73 (81)
T ss_dssp STT-EEEEEETTEEEEEEE-B-TTEEEE-E-SS--TT-SEEEEEEE-TTB-
T ss_pred CCCcEEEEecCCEEEEEEEec-CceEEE-ECCcccCCCceEEEEEEEEccE
Confidence 46788887 66654 5788 999999 676 58999999986653
No 211
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=29.32 E-value=1.3e+03 Score=29.56 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=32.0
Q ss_pred EEeeEcCCCCccCCcEEEEEe----CCC--c-e-eEEEe-eCCCceEEe--cC--CCCCcEEEEEEEEe
Q 001120 898 TGTITLLSGQPKDGVSVEARS----ESK--G-Y-YEETV-TDTSGSYRL--RG--LHPDTTYVIKVVKK 953 (1150)
Q Consensus 898 ~G~v~~~~g~p~~gv~v~~~~----~~~--~-~-~~~~~-Td~~G~~~i--~g--L~Pg~~y~i~~~~~ 953 (1150)
.=+|+.+=|+|++.+.|.+.. .+. . . ..+.+ ...++.|.+ .. +.+| +|.+.++..
T Consensus 294 ~v~Vt~vlG~~~~~~~v~~~~a~~s~~~~~~vls~~~l~~~~~~~~~~l~~~~~k~~~G-~Y~~~~~~~ 361 (636)
T PF05817_consen 294 KVRVTNVLGQPLPPLSVKLVSAISSSSDDSVVLSNKPLTFDSDKTVYELDLMSLKPARG-YYKFSFSVS 361 (636)
T ss_pred EEEEEeccCCcCCcchhhhhhhhhccCCcceeeccccceecCCCCeEEEecccCCCCCc-eEEEEEEec
Confidence 335778889998877776542 111 0 1 12222 245666765 34 4566 799999874
No 212
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=28.84 E-value=2.7e+02 Score=25.90 Aligned_cols=50 Identities=22% Similarity=0.433 Sum_probs=33.5
Q ss_pred CCcceEEEEEeCCCceEE-EEEeCCCceEEEccc--cCccEEEEEEcCCceEE
Q 001120 96 GPSNVNVELLSHSGDLIS-SVITSSEGSYLFKNI--IPGKYKLRASHPNLSVE 145 (1150)
Q Consensus 96 plaGv~V~L~~~~g~~i~-~ttTd~~G~f~f~~L--~pG~Y~l~a~~~g~~~~ 145 (1150)
+-..++|.|.+.+|..+. +.+-..||.|...-. .+|.|.|.....|..+.
T Consensus 30 G~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g~~I~ 82 (93)
T smart00557 30 GGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGGEHIP 82 (93)
T ss_pred CCCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECCEECC
Confidence 334578888887774433 444556688876644 56899998888776654
No 213
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=27.66 E-value=8.4e+02 Score=26.73 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=29.8
Q ss_pred ecCCcceEEeecccc---cccC-C---CceeEEecCCceEEEEEEEEee
Q 001120 852 NLFPGNFYLRPLLKE---YAFS-P---PAQAIELGSGESREVIFQATRV 893 (1150)
Q Consensus 852 ~L~PG~Y~~~~~~ke---y~~~-p---~~~~i~v~~g~~~~v~~~~~r~ 893 (1150)
-|++|.|.+++.--+ =.|+ | -++.|+|++|++..+++..+..
T Consensus 61 ~L~~G~Ytv~A~~g~~~~~~~d~pyy~G~~~f~I~~g~~t~v~v~C~la 109 (235)
T PF14900_consen 61 ELPVGSYTVKASYGDNVAAGFDKPYYEGSTTFTIEKGETTTVSVTCKLA 109 (235)
T ss_pred eecCCcEEEEEEcCCCccccccCceeecceeEEEecCCcEEEEEEEEee
Confidence 588999999987322 1222 2 4568999999999988765544
No 214
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=26.90 E-value=4.7e+02 Score=24.23 Aligned_cols=49 Identities=31% Similarity=0.388 Sum_probs=30.7
Q ss_pred eeEEEEEEEEcCCcccEEEEEEcCC-CcceeeeeeeCCCeEEEEE---EcCeeEEE
Q 001120 353 SYDICGVVRTVGSGNKVKVALTHGP-DKVKPQVKQTDNNGNFCFE---VPPGEYRL 404 (1150)
Q Consensus 353 ~~~V~G~V~~~~~~~~a~Vtl~~g~-~~~~~~~~~Td~dG~f~f~---L~pG~Y~l 404 (1150)
.+.|+|++... ..+..|.|.... +.....++... +|+|.|. -.|+.|.|
T Consensus 12 ~~~I~G~i~~~--~~~~~vyL~~~~~~~~~~ds~~v~-nG~F~f~~~~~~p~~~~l 64 (106)
T PF14289_consen 12 QFTIEGKIKGL--PDGDKVYLYYYDNGKVVIDSVVVK-NGKFSFKGPLDEPGFYYL 64 (106)
T ss_pred cEEEEEEEcCC--CCCCEEEEEEeCCCCEEEEEEEEe-CCEEEEEEeCCCCEEEEE
Confidence 57899999754 134456564222 22224455565 9999998 34788888
No 215
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=26.59 E-value=8.2e+02 Score=26.25 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=50.2
Q ss_pred EEEEE-Ec----Ce---eEEEEEEeecCCCCCceeeeCceEEEEEcCcccceEEE--E-eeeEEEEEEEeccC---C-CC
Q 001120 392 NFCFE-VP----PG---EYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFS--Q-ALVNVLGNVACKER---C-GP 456 (1150)
Q Consensus 392 ~f~f~-L~----pG---~Y~l~~~~~~~~~~~G~~~~p~~~~V~V~~p~~~I~F~--q-~~a~V~G~V~~~~~---~-~~ 456 (1150)
++.|. || -| .|+|.+... +||. ..+... .|.-. . ...+|+++-.-.+. . +.
T Consensus 49 ~~tf~~Lpkyd~~G~~i~YtV~E~~V-----~~Y~-------~~v~g~--tITNt~~~~~~t~i~v~K~W~d~~~~~rP~ 114 (187)
T cd00222 49 KYEFKDLPKYDNEGKKINYTVVEVQV-----PDYE-------TPIIGE--TITNKYINKETTSFSGKKIWKNDTAGQRPE 114 (187)
T ss_pred EEEEcCCCcccCCCCEEEEEEEeecC-----CCcE-------EEeccc--EEEEeecCCceEEEEEEEEEcCCCCCCCCc
Confidence 67788 87 35 688888763 4542 222111 12111 1 23455555444331 1 22
Q ss_pred ceEEEEEEeCCccccCCcceeEEEe-cCCCcEEEcccCCc------cEEEEEEe
Q 001120 457 LVTVTLMRLGQKHYDGTEKKTVSLT-DDSDQFLFRDVLPG------KYRLEVKR 503 (1150)
Q Consensus 457 ~~~VtL~~~~~~~~~~~~~~~~~~T-d~~G~f~f~~L~PG------~Y~v~~~~ 503 (1150)
.+.|.|..-+.. ...+..++ +.+=+|+|.+|+-. .|+|.+..
T Consensus 115 sI~V~L~adG~~-----~~~~~~l~~~n~W~~tf~~Lp~y~~Gk~i~YtV~E~~ 163 (187)
T cd00222 115 EIQVQLLQDGQA-----TGKTKIVTKSNDWTYTFKDLPKYDTGNEYKYSVEEVT 163 (187)
T ss_pred eEEEEEEeCCEE-----cceEEEeecCCCcEEEecCCccccCCCEEeEEEEEec
Confidence 567777653221 11334454 45689999999876 68888863
No 216
>PRK15217 fimbrial outer membrane usher protein; Provisional
Probab=26.42 E-value=8.9e+02 Score=32.14 Aligned_cols=108 Identities=15% Similarity=0.074 Sum_probs=79.1
Q ss_pred cceeecCCceEEEeecCCc---ceEEee--cccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccC-C
Q 001120 838 NNSVSWAGGSFHFDNLFPG---NFYLRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-G 911 (1150)
Q Consensus 838 ~n~~t~~~G~~~f~~L~PG---~Y~~~~--~~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~-g 911 (1150)
.+..||.+|...+-+|.|= +..|-+ +..+.+++-+.+.|...+|.-..+.|...+. ..+.=+++..+|+|+| |
T Consensus 688 ~~~~Td~~G~AvvP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g-~~~ll~l~~~~G~~lP~G 766 (826)
T PRK15217 688 KYRTTNRKGVVVYDGLTPYRENHLMLDVSQSDSETELRGNRKIAAPYRGAVVLVNFDTDQR-KPWFIKALRADGQPLTFG 766 (826)
T ss_pred CCCeECCCCEEEeCCCCCceeceEEECCcCCCCCEEecccEEEEEecCCcEEEEEEEEecc-eEEEEEEEcCCCCcCCCc
Confidence 4467999999999999973 333433 3456778788888999999999999877665 3456678888999987 5
Q ss_pred cEEEEEeCCCceeEEEeeCCCceEEecCCCCCcEEEEEE
Q 001120 912 VSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 950 (1150)
Q Consensus 912 v~v~~~~~~~~~~~~~~Td~~G~~~i~gL~Pg~~y~i~~ 950 (1150)
+.|. ++++ .+......+|.--|+|+.+....+|+.
T Consensus 767 a~V~--~~~g--~~~g~Vg~~G~vyl~g~~~~~~l~v~w 801 (826)
T PRK15217 767 YEVN--DIHG--HNIGVVGQGSQLFIRTNEVPPSVKVAI 801 (826)
T ss_pred eEEE--CCCC--cEEEEEcCCCeEEEEcCCCCceEEEEE
Confidence 5554 3332 255788999999999998776544443
No 217
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=26.10 E-value=1.3e+02 Score=40.47 Aligned_cols=97 Identities=15% Similarity=0.384 Sum_probs=64.8
Q ss_pred eEEEEEEECCCCcccCCceEEEEEcC---CCcCCcceeeEEEeCceEEEEEEeecCCccccCCCCCCcceEEEEEeCCCc
Q 001120 34 GSFVIKVNGPEGWSWNPDKVAVTVDD---TGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGD 110 (1150)
Q Consensus 34 G~Y~L~~~~P~Gw~f~p~~v~v~Vd~---~~~s~~~dinf~~~g~~IsG~V~~~~G~~s~~~~g~plaGv~V~L~~~~g~ 110 (1150)
--.++....|+.|..++.......|. ...+......|.+.-.-++|+-.+.. +|+|+.|..++|-+.++.
T Consensus 1001 ~lltm~l~~pesWlVe~v~a~~DLdNI~Le~~~~~v~A~yele~lLleG~c~d~~-------~g~pprGlql~Lgt~~~p 1073 (1470)
T KOG1879|consen 1001 PLLTMNLDVPESWLVEAVRAIYDLDNIKLEDTSSDVTAEYELEYLLLEGHCFDKV-------SGQPPRGLQLTLGTSANP 1073 (1470)
T ss_pred ceeEEeecCCCceEeeeccccccchheeeeccCCchheeeehhhhhccceehhhc-------cCCCCCceEEEeccCCCC
Confidence 34667899999999887665433332 11111223446666667778665432 579999999999766653
Q ss_pred -eEEEEEeCCCceEEEccccCccEEEEEE
Q 001120 111 -LISSVITSSEGSYLFKNIIPGKYKLRAS 138 (1150)
Q Consensus 111 -~i~~ttTd~~G~f~f~~L~pG~Y~l~a~ 138 (1150)
++.+.+--.=|.|+|. .-||-+.++..
T Consensus 1074 ~i~DTiVManlGYfQlK-anPG~W~L~lr 1101 (1470)
T KOG1879|consen 1074 HIVDTIVMANLGYFQLK-ANPGAWILRLR 1101 (1470)
T ss_pred eeeeeEEEeccceeEEe-cCCcceEEEec
Confidence 3445555666999999 88998888764
No 218
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=25.98 E-value=1.1e+02 Score=26.81 Aligned_cols=46 Identities=22% Similarity=0.415 Sum_probs=27.3
Q ss_pred EEEEecCCCCCccc-ceEEEEeCCCccccceeecCCceEEEeecCC-cceEEe
Q 001120 811 VRIYSKDDAGEPIP-SVLLSLSGDDGYRNNSVSWAGGSFHFDNLFP-GNFYLR 861 (1150)
Q Consensus 811 v~v~~~~~~~~pl~-gvllslsg~~~~r~n~~t~~~G~~~f~~L~P-G~Y~~~ 861 (1150)
+++.+.+ |+||| |+.+....+ +...+.+++|.+.+.++.+ |+..++
T Consensus 1 ~~l~~~~--G~~lPfGA~v~~~~g---~~~g~Vg~~G~vyl~~~~~~~~L~V~ 48 (68)
T PF13953_consen 1 FTLRDAD--GKPLPFGASVSDEDG---NNIGIVGQDGQVYLSGLPPKGTLTVK 48 (68)
T ss_dssp EEEEETT--SEE--TT-EEEETTS---SEEEEB-GCGEEEEEEE-TCEEEEEE
T ss_pred CEEEcCC--CCcCCCCcEEEcCCC---CEEEEEcCCCEEEEECCCCCcEEEEE
Confidence 3566655 78887 566665443 4557889999999999984 444444
No 219
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.20 E-value=2.2e+02 Score=30.47 Aligned_cols=72 Identities=21% Similarity=0.354 Sum_probs=48.7
Q ss_pred CcEEEEEE-EeCCcceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCceEEECccCCeeEEEEEEEecCCeE
Q 001120 169 GYEIRGLV-VAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTV 247 (1150)
Q Consensus 169 g~~i~G~V-~~~G~Pl~Ga~V~L~~~~~~~~~~~~g~~~~~~~g~~~~~a~TDa~G~f~f~~LppG~Y~v~~~~~~~~~~ 247 (1150)
|-.+++.- +.+| .-.|+.+.+++.+++ .+....-+..|+|+|.--.+|.|++-...+-.
T Consensus 40 gd~~~vsF~v~~g-g~~~vd~~I~gP~~~----------------~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~~s--- 99 (201)
T KOG1692|consen 40 GDKLSVSFEVIDG-GFLGVDVEITGPDGK----------------IIHKGKRESSGKYTFTAPKKGTYTFCFSNKMS--- 99 (201)
T ss_pred CCEEEEEEEEecC-CccceeEEEECCCCc----------------hhhhcccccCceEEEEecCCceEEEEecCCCC---
Confidence 33444432 2345 667888888887543 34566677789999998889999999864322
Q ss_pred EEecCceEEEEEec
Q 001120 248 FDVSPSLVSMSVRH 261 (1150)
Q Consensus 248 ~~~~P~~~~vtV~~ 261 (1150)
+..|..+.|++..
T Consensus 100 -~mtpk~V~F~ihv 112 (201)
T KOG1692|consen 100 -TMTPKTVMFTIHV 112 (201)
T ss_pred -CCCceEEEEEEEE
Confidence 2567777777654
No 220
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=24.99 E-value=1.5e+02 Score=38.19 Aligned_cols=58 Identities=19% Similarity=0.191 Sum_probs=43.2
Q ss_pred EEEEEEEeC-CCccccCeEEEE--cceee--eEeCCCceEEECcc--CCcc-EEEEEEeccccccce
Q 001120 276 SVGGRVVDE-NDMGVEGVKILV--DGHER--SITDRDGYYKLDQV--TSNR-YTIEAVKVHYKFNKL 334 (1150)
Q Consensus 276 sV~G~V~d~-~G~plaGA~V~l--~G~~~--~~TD~dG~f~l~~L--~pG~-Ytv~~~~~~y~~~~~ 334 (1150)
.|.-.|.|. +-+||++|.|.| |-..+ ++|+.||.-.| .+ ..|. -+|.+.+++|..+..
T Consensus 2 ~lKV~V~d~~t~qpl~~A~V~V~~N~t~~~s~~t~~dG~~~l-~~~yrlg~~l~v~a~k~gyv~ns~ 67 (807)
T PF10577_consen 2 TLKVQVSDASTRQPLSDASVEVFGNQTLTASGTTGNDGVVLL-KFPYRLGTWLIVTASKDGYVPNSV 67 (807)
T ss_pred eEEEEEecccCcccCCCCeEEEEeceeEeecceecCCceEEE-EEeccCCCeEEEEEecCCccCCCC
Confidence 345577776 789999999998 43333 59999998666 34 4676 557899999987765
No 221
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=24.50 E-value=4.1e+02 Score=24.59 Aligned_cols=42 Identities=19% Similarity=0.430 Sum_probs=25.3
Q ss_pred ccEEEEEEcCCCcceeeeeeeCCCeEEEEE---EcCeeEEEEEEe
Q 001120 367 NKVKVALTHGPDKVKPQVKQTDNNGNFCFE---VPPGEYRLSAMA 408 (1150)
Q Consensus 367 ~~a~Vtl~~g~~~~~~~~~~Td~dG~f~f~---L~pG~Y~l~~~~ 408 (1150)
....|.+...++........-..||.|.+. -.+|.|+|.+.-
T Consensus 32 ~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~ 76 (93)
T smart00557 32 GELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKF 76 (93)
T ss_pred CcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEE
Confidence 344555554333222334445567888876 455999999887
No 222
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=24.36 E-value=3.6e+02 Score=24.41 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=11.2
Q ss_pred cCCCcEEEcccCCccEEEEEEe
Q 001120 482 DDSDQFLFRDVLPGKYRLEVKR 503 (1150)
Q Consensus 482 d~~G~f~f~~L~PG~Y~v~~~~ 503 (1150)
|.+|. .|++|.|++++..
T Consensus 60 d~~G~----~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 60 DDDGN----PVPDGTYTFRVTA 77 (81)
T ss_dssp -TTS-----B--SEEEEEEEEE
T ss_pred CCCcC----CCCCCCEEEEEEE
Confidence 45554 6899999999875
No 223
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=23.51 E-value=1.1e+03 Score=26.86 Aligned_cols=39 Identities=13% Similarity=0.410 Sum_probs=24.0
Q ss_pred cceEEEEEeCCCceEEEEEeCCCceEEEc-----cccCccEEEEEE
Q 001120 98 SNVNVELLSHSGDLISSVITSSEGSYLFK-----NIIPGKYKLRAS 138 (1150)
Q Consensus 98 aGv~V~L~~~~g~~i~~ttTd~~G~f~f~-----~L~pG~Y~l~a~ 138 (1150)
+|..|.+.. +|. ..+.+.+.+|.|++. .|..|.|.|.+.
T Consensus 74 ~g~~v~v~~-~g~-~~t~~~~~~G~ws~t~~~~~~l~~g~~ti~v~ 117 (317)
T PF13753_consen 74 PGSTVTVTI-NGT-TGTLTADADGNWSVTVTPSDDLPDGDYTITVT 117 (317)
T ss_pred CCCEEEEEE-CCE-EEEEEEecCCcEEEeeccccccccCcceeEEE
Confidence 344555543 443 244557799997764 245788888776
No 224
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=23.43 E-value=3.1e+02 Score=25.81 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=20.6
Q ss_pred EEEeCCCccccCeEEEEcceeeeEeCCCceEEECc-cCCccEEEEEE
Q 001120 280 RVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQ-VTSNRYTIEAV 325 (1150)
Q Consensus 280 ~V~d~~G~plaGA~V~l~G~~~~~TD~dG~f~l~~-L~pG~Ytv~~~ 325 (1150)
+|++++|+.+.--...+++ ....=...+.. |++|+|+|+-+
T Consensus 38 ~v~~~~g~~v~~~~~~~~~-----~~~~~~~~l~~~l~~G~YtV~wr 79 (97)
T PF04234_consen 38 TVTDPDGKRVDLGEPTVDG-----DGKTLTVPLPPPLPPGTYTVSWR 79 (97)
T ss_dssp EEEEEEETTSCTCEEEEEE-----STTEEEEEESS---SEEEEEEEE
T ss_pred EEEcCCCceeecCcceecC-----CceEEEEECCCCCCCceEEEEEE
Confidence 5566666655543333322 00122455566 99999999743
No 225
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=23.17 E-value=4.1e+02 Score=32.73 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=38.0
Q ss_pred EeccceeeeccEEEec-eEEEEEEEeCCCccccCeEEEEcceeeeEeCCCceEEECccCCccEEEEEEe
Q 001120 259 VRHQHVTVPEKFQVTG-FSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVK 326 (1150)
Q Consensus 259 V~~~~~~l~~~f~~~g-~sV~G~V~d~~G~plaGA~V~l~G~~~~~TD~dG~f~l~~L~pG~Ytv~~~~ 326 (1150)
+..+..++.-.+...+ ..|+..|.|.+|..++.....+++... .=...+.++.+|+|+|.+..
T Consensus 324 I~dG~~~i~ftv~a~g~~~vta~V~d~~g~~~~~~~~~v~d~s~-----~vtL~Ls~~~AG~y~Lvv~~ 387 (478)
T PRK13211 324 IGDGAATLDFTVTATGDMNVEATVYNHDGEALGSKSQTVNDGSQ-----SVSLDLSKLKAGHHMLVVKA 387 (478)
T ss_pred EcCCcEEEEEEEEeccceEEEEEEEcCCCCeeeeeeEEecCCce-----eEEEecccCCCceEEEEEEE
Confidence 3444444432222222 467888888888888777766632211 11344568899999988765
No 226
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=23.03 E-value=1.6e+02 Score=33.35 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=31.4
Q ss_pred ccCCcEEEEE-eCCCceeEEEeeCCC-ceEE-ec--CCCCCcEEEEEEEEec
Q 001120 908 PKDGVSVEAR-SESKGYYEETVTDTS-GSYR-LR--GLHPDTTYVIKVVKKD 954 (1150)
Q Consensus 908 p~~gv~v~~~-~~~~~~~~~~~Td~~-G~~~-i~--gL~Pg~~y~i~~~~~~ 954 (1150)
++.||.|++. +..+........+.+ |.|. .. -+.||.+|++++..++
T Consensus 59 ~v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~~~~~~~~~~G~~Y~L~V~~~~ 110 (298)
T PF14054_consen 59 PVSGATVTIYEDGQGNEYLFEESSNNDGVYYSSNSFRGRPGRTYRLEVETPG 110 (298)
T ss_pred ccCCcEEEEEeCCCcceEeecccCCCcceEEecccccccCCCEEEEEEEECC
Confidence 3999999995 333333332333333 8888 44 4679999999999863
No 227
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=22.84 E-value=4.5e+02 Score=28.02 Aligned_cols=50 Identities=16% Similarity=0.314 Sum_probs=34.4
Q ss_pred CCCCcceEEEEEeCCCce-EEEEEeCCCceEEEccccCccEEEEEEcCCceE
Q 001120 94 GGGPSNVNVELLSHSGDL-ISSVITSSEGSYLFKNIIPGKYKLRASHPNLSV 144 (1150)
Q Consensus 94 g~plaGv~V~L~~~~g~~-i~~ttTd~~G~f~f~~L~pG~Y~l~a~~~g~~~ 144 (1150)
..|++|..+-+....|+. -.-..+-.+|+|+..+|.+|.-.| ..+.|..+
T Consensus 61 S~ppaGse~vvv~lGG~rShgviv~~~~~syR~~GL~aGeT~i-Y~~eG~~i 111 (203)
T COG4384 61 SVPPAGSEAVVVPLGGKRSHGVIVVSQHGSYRITGLKAGETVI-YNHEGAKI 111 (203)
T ss_pred cCCCCCCeEEEEecCCccceeEEEEecCCccccccccCCceEE-EeccCcEE
Confidence 369999888887766632 223456789999999999997333 33444443
No 228
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=21.65 E-value=7.2e+02 Score=24.86 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=36.2
Q ss_pred eEEEeCceEEEEEEeecCCccccCCCCCCcceEEEE--EeCCC---ceEEEEEeCCCceEEEc--cccCccEEEEE
Q 001120 69 NFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVEL--LSHSG---DLISSVITSSEGSYLFK--NIIPGKYKLRA 137 (1150)
Q Consensus 69 nf~~~g~~IsG~V~~~~G~~s~~~~g~plaGv~V~L--~~~~g---~~i~~ttTd~~G~f~f~--~L~pG~Y~l~a 137 (1150)
.+.+.+-.+.=++.+. +|.|+.+..++| +++.. .........++|.|... .+.+|.|.|+.
T Consensus 63 ~~~~~~~~~~i~~~d~--------~g~~~~~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~~~~G~W~l~l 130 (146)
T PF05751_consen 63 ELTIDDNSLTIRLTDP--------NGAPVSGAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPLLKKGRWYLRL 130 (146)
T ss_pred eeeecCCeEEEEEEcC--------CCCcCcCceEEEEEECCCCccCCeeEEeeECCCceEEEEcCCCCCccEEEEE
Confidence 3344444444444443 467887766665 44442 22334446888888884 34688888887
No 229
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=21.03 E-value=1.1e+02 Score=26.32 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=21.2
Q ss_pred CCceEEecCCCCCcEEEEEEEEec
Q 001120 931 TSGSYRLRGLHPDTTYVIKVVKKD 954 (1150)
Q Consensus 931 ~~G~~~i~gL~Pg~~y~i~~~~~~ 954 (1150)
....|.|.+|.|+..|.+++.+..
T Consensus 55 ~~~~~~i~~l~p~~~Y~~~v~a~~ 78 (93)
T cd00063 55 SETSYTLTGLKPGTEYEFRVRAVN 78 (93)
T ss_pred cccEEEEccccCCCEEEEEEEEEC
Confidence 667899999999999999999764
No 230
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=20.90 E-value=3.2e+02 Score=25.84 Aligned_cols=65 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred ccccccCCCceeEEecCCceEEEEEEEEeeeEeEEEeeEcCCCCccCCcEEEEEeCCCceeEEEeeCCCceEEec
Q 001120 864 LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLR 938 (1150)
Q Consensus 864 ~key~~~p~~~~i~v~~g~~~~v~~~~~r~~~s~~G~v~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~ 938 (1150)
++++.|+|+ .|+++.|+...+.|++.-..- ..+...+ .-.-+.+..+....-+.+.++-|.|.+.
T Consensus 27 ~~~~~f~P~--~i~v~~G~~v~l~~~N~~~~~---h~~~i~~-----~~~~~~l~~g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 27 VTDFGFSPS--TITVKAGQPVTLTFTNNDSRP---HEFVIPD-----LGISKVLPPGETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp ---EEEES---EEEEETTCEEEEEEEE-SSS----EEEEEGG-----GTEEEEE-TT-EEEEEEEE-S-EEEEEB
T ss_pred ccCCeEecC--EEEEcCCCeEEEEEEECCCCc---EEEEECC-----CceEEEECCCCEEEEEEcCCCCEEEEEE
No 231
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=20.68 E-value=1.9e+02 Score=32.65 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=30.9
Q ss_pred CCCcceEEEEEeCC-CceEEEEEeCCC-ceEE-Ec--cccCc-cEEEEEEcCCce
Q 001120 95 GGPSNVNVELLSHS-GDLISSVITSSE-GSYL-FK--NIIPG-KYKLRASHPNLS 143 (1150)
Q Consensus 95 ~plaGv~V~L~~~~-g~~i~~ttTd~~-G~f~-f~--~L~pG-~Y~l~a~~~g~~ 143 (1150)
.++.||+|+|...+ +........+.+ |.|. .. .+.+| +|+|++..++..
T Consensus 58 ~~v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~~~~~~~~~~G~~Y~L~V~~~~~~ 112 (298)
T PF14054_consen 58 EPVSGATVTIYEDGQGNEYLFEESSNNDGVYYSSNSFRGRPGRTYRLEVETPGGK 112 (298)
T ss_pred cccCCcEEEEEeCCCcceEeecccCCCcceEEecccccccCCCEEEEEEEECCCC
Confidence 34999999995443 443333333333 7777 32 25667 899999885543
No 232
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=20.20 E-value=1.3e+03 Score=26.34 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=29.4
Q ss_pred eEEEEEEEeCCCccccCeEEEEcceee-eEeCCCceEEEC-----ccCCccEEEEEE
Q 001120 275 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLD-----QVTSNRYTIEAV 325 (1150)
Q Consensus 275 ~sV~G~V~d~~G~plaGA~V~l~G~~~-~~TD~dG~f~l~-----~L~pG~Ytv~~~ 325 (1150)
..++|.+... .+-.-+.+.++|... ...+++|.|.+. .|..|.|+|.+.
T Consensus 63 ~t~s~tvs~~--~~g~~v~v~~~g~~~t~~~~~~G~ws~t~~~~~~l~~g~~ti~v~ 117 (317)
T PF13753_consen 63 VTFSGTVSGA--EPGSTVTVTINGTTGTLTADADGNWSVTVTPSDDLPDGDYTITVT 117 (317)
T ss_pred eEEEEEecCC--CCCCEEEEEECCEEEEEEEecCCcEEEeeccccccccCcceeEEE
Confidence 4566666532 111123444566654 356799987662 356789998876
No 233
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.11 E-value=1.9e+02 Score=30.92 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=35.0
Q ss_pred CCcceEEEE----EeCCC--ceEEEEEeCCCceEEE-ccccCccEEEEEEcCCceEE
Q 001120 96 GPSNVNVEL----LSHSG--DLISSVITSSEGSYLF-KNIIPGKYKLRASHPNLSVE 145 (1150)
Q Consensus 96 plaGv~V~L----~~~~g--~~i~~ttTd~~G~f~f-~~L~pG~Y~l~a~~~g~~~~ 145 (1150)
+.+.++.+| .+..| -.+.+..||+.|.-.- ..|.||.|.+..++.||.-.
T Consensus 235 GaaDaTAtLPtTLKdSkGaDVpVTsVITnssG~~vTNgqLsaGtYtVTySAsGY~DV 291 (301)
T PF06488_consen 235 GAADATATLPTTLKDSKGADVPVTSVITNSSGNVVTNGQLSAGTYTVTYSASGYADV 291 (301)
T ss_pred cccCceEEcccccccCCCCcceeEEEEEcCCCcEeecCcccCceEEEEEeccccccc
Confidence 444445443 44445 2356788999998654 46899999999999999743
Done!