Query 001122
Match_columns 1149
No_of_seqs 682 out of 3692
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 16:25:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 3E-177 6E-182 1581.5 69.7 803 337-1149 4-868 (868)
2 PLN02270 phospholipase D alpha 100.0 3E-167 6E-172 1497.6 67.6 786 343-1149 4-808 (808)
3 PLN02352 phospholipase D epsil 100.0 1E-160 3E-165 1438.4 66.0 740 342-1149 5-758 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 3E-143 6E-148 1280.6 52.9 750 337-1149 66-853 (887)
5 PLN02866 phospholipase D 100.0 3.9E-93 8.4E-98 867.7 51.6 532 505-1129 320-1060(1068)
6 PRK12452 cardiolipin synthetas 100.0 2E-47 4.4E-52 458.0 34.7 335 507-1041 132-466 (509)
7 PRK01642 cls cardiolipin synth 100.0 2.9E-46 6.3E-51 447.0 36.5 331 507-1041 108-440 (483)
8 PRK11263 cardiolipin synthase 100.0 2.4E-45 5.2E-50 429.0 35.3 326 510-1041 3-328 (411)
9 COG1502 Cls Phosphatidylserine 100.0 3.8E-35 8.1E-40 347.5 34.6 337 512-1041 57-395 (438)
10 PRK09428 pssA phosphatidylseri 100.0 7.7E-33 1.7E-37 326.2 32.4 348 513-1041 23-396 (451)
11 PHA02820 phospholipase-D-like 100.0 7.7E-32 1.7E-36 316.7 30.3 326 545-1039 26-361 (424)
12 PHA03003 palmytilated EEV memb 100.0 5.6E-31 1.2E-35 305.5 30.3 318 545-1040 31-348 (369)
13 PLN02230 phosphoinositide phos 99.9 3.1E-26 6.7E-31 273.9 11.7 178 285-482 374-597 (598)
14 PLN02223 phosphoinositide phos 99.9 1.7E-25 3.6E-30 263.1 15.1 174 288-482 317-536 (537)
15 KOG0169 Phosphoinositide-speci 99.9 5.4E-26 1.2E-30 270.7 9.7 177 286-484 524-745 (746)
16 PLN02222 phosphoinositide phos 99.9 6.1E-25 1.3E-29 262.6 13.0 178 285-482 357-580 (581)
17 cd04015 C2_plant_PLD C2 domain 99.9 4.4E-24 9.4E-29 220.2 16.3 142 342-483 2-158 (158)
18 PLN02952 phosphoinositide phos 99.9 1.3E-24 2.8E-29 260.6 12.5 176 285-482 375-596 (599)
19 PLN02228 Phosphoinositide phos 99.9 1E-23 2.2E-28 251.7 12.0 180 286-485 340-563 (567)
20 KOG1264 Phospholipase C [Lipid 99.9 2.3E-23 4.9E-28 244.2 12.2 177 286-489 972-1195(1267)
21 PF12357 PLD_C: Phospholipase 99.9 2.7E-22 6E-27 176.5 5.7 72 1069-1140 2-73 (74)
22 cd04016 C2_Tollip C2 domain pr 99.9 5.3E-21 1.1E-25 188.7 15.2 118 346-482 1-121 (121)
23 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.1E-19 2.4E-24 180.6 13.9 114 349-478 2-125 (126)
24 cd04013 C2_SynGAP_like C2 doma 99.8 2.5E-19 5.3E-24 181.9 15.2 124 346-489 10-145 (146)
25 cd04042 C2A_MCTP_PRT C2 domain 99.8 4.3E-19 9.2E-24 174.6 15.6 119 349-484 2-121 (121)
26 cd08682 C2_Rab11-FIP_classI C2 99.8 2.6E-19 5.6E-24 177.4 13.5 117 349-481 1-126 (126)
27 PRK05443 polyphosphate kinase; 99.8 9.5E-18 2.1E-22 206.5 25.6 272 542-1040 345-633 (691)
28 cd04019 C2C_MCTP_PRT_plant C2 99.8 5E-18 1.1E-22 173.8 14.8 122 349-486 2-135 (150)
29 cd08400 C2_Ras_p21A1 C2 domain 99.8 9.6E-18 2.1E-22 166.6 16.0 119 347-484 4-124 (126)
30 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 6.8E-18 1.5E-22 166.6 14.7 118 349-482 2-121 (121)
31 cd08681 C2_fungal_Inn1p-like C 99.8 3.1E-18 6.8E-23 167.3 12.2 116 347-482 1-118 (118)
32 cd04022 C2A_MCTP_PRT_plant C2 99.8 8.1E-18 1.8E-22 167.0 13.5 120 348-484 1-127 (127)
33 cd08678 C2_C21orf25-like C2 do 99.7 3.3E-17 7.1E-22 162.5 14.7 122 349-487 1-124 (126)
34 TIGR03705 poly_P_kin polyphosp 99.7 1.3E-16 2.8E-21 195.4 23.1 272 543-1040 337-624 (672)
35 cd08378 C2B_MCTP_PRT_plant C2 99.7 2.2E-17 4.7E-22 163.0 12.7 112 349-482 2-119 (121)
36 cd04014 C2_PKC_epsilon C2 doma 99.7 6.2E-17 1.3E-21 161.7 15.3 126 344-484 1-130 (132)
37 cd08377 C2C_MCTP_PRT C2 domain 99.7 5.7E-17 1.2E-21 158.4 14.6 118 347-483 1-119 (119)
38 cd08391 C2A_C2C_Synaptotagmin_ 99.7 6.5E-17 1.4E-21 158.2 13.7 120 347-482 1-121 (121)
39 cd04024 C2A_Synaptotagmin-like 99.7 8.6E-17 1.9E-21 159.0 14.2 120 347-482 1-128 (128)
40 cd04036 C2_cPLA2 C2 domain pre 99.7 7.2E-17 1.6E-21 158.3 13.4 113 349-482 2-117 (119)
41 cd04044 C2A_Tricalbin-like C2 99.7 8.4E-17 1.8E-21 158.1 13.3 121 347-484 2-124 (124)
42 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.4E-16 2.9E-21 157.2 14.6 117 349-481 2-120 (121)
43 cd08376 C2B_MCTP_PRT C2 domain 99.7 1.5E-16 3.2E-21 155.1 14.5 112 349-483 2-115 (116)
44 KOG1030 Predicted Ca2+-depende 99.7 3.4E-17 7.4E-22 166.4 9.9 98 343-456 2-100 (168)
45 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.3E-16 2.8E-21 159.2 13.4 120 348-483 1-133 (133)
46 cd08395 C2C_Munc13 C2 domain t 99.7 9.8E-17 2.1E-21 158.2 11.9 100 348-463 1-111 (120)
47 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2.1E-16 4.6E-21 155.8 14.2 118 348-481 1-123 (123)
48 cd08373 C2A_Ferlin C2 domain f 99.7 3.1E-16 6.6E-21 155.6 14.1 117 353-489 2-122 (127)
49 cd04046 C2_Calpain C2 domain p 99.7 5.7E-16 1.2E-20 153.8 15.6 121 346-484 2-123 (126)
50 cd08381 C2B_PI3K_class_II C2 d 99.7 2.1E-16 4.5E-21 156.3 11.2 101 346-462 12-121 (122)
51 cd04050 C2B_Synaptotagmin-like 99.7 3.7E-16 7.9E-21 150.1 11.7 98 349-464 2-102 (105)
52 cd08375 C2_Intersectin C2 doma 99.7 1.1E-15 2.3E-20 154.1 14.4 114 347-482 15-135 (136)
53 cd08688 C2_KIAA0528-like C2 do 99.7 4.2E-16 9.1E-21 151.1 11.0 100 349-464 1-109 (110)
54 cd08685 C2_RGS-like C2 domain 99.7 2.7E-16 5.8E-21 154.9 9.7 102 345-462 10-119 (119)
55 cd08394 C2A_Munc13 C2 domain f 99.6 1.3E-15 2.8E-20 150.6 13.5 97 347-463 2-100 (127)
56 cd04028 C2B_RIM1alpha C2 domai 99.6 9.9E-16 2.2E-20 155.9 13.0 107 344-465 26-139 (146)
57 cd08387 C2A_Synaptotagmin-8 C2 99.6 8.2E-16 1.8E-20 151.8 11.7 103 346-463 15-123 (124)
58 cd04010 C2B_RasA3 C2 domain se 99.6 9.6E-16 2.1E-20 156.6 12.3 103 349-468 2-126 (148)
59 cd08382 C2_Smurf-like C2 domai 99.6 1.5E-15 3.2E-20 150.3 13.1 116 349-480 2-122 (123)
60 cd04045 C2C_Tricalbin-like C2 99.6 1.4E-15 2.9E-20 150.1 12.7 104 347-466 1-105 (120)
61 cd08677 C2A_Synaptotagmin-13 C 99.6 7.5E-16 1.6E-20 150.8 10.1 99 346-462 13-118 (118)
62 cd04029 C2A_SLP-4_5 C2 domain 99.6 1.9E-15 4.1E-20 150.1 12.4 102 346-462 14-124 (125)
63 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.8E-15 3.9E-20 149.3 11.9 103 346-463 15-123 (124)
64 cd04051 C2_SRC2_like C2 domain 99.6 1.4E-15 3E-20 150.3 10.8 113 348-478 1-125 (125)
65 KOG1265 Phospholipase C [Lipid 99.6 3.1E-16 6.8E-21 186.9 7.3 155 285-471 607-812 (1189)
66 cd04027 C2B_Munc13 C2 domain s 99.6 3.1E-15 6.8E-20 148.7 13.3 114 348-480 2-127 (127)
67 cd08393 C2A_SLP-1_2 C2 domain 99.6 1.6E-15 3.6E-20 150.4 10.8 102 347-463 15-125 (125)
68 cd04041 C2A_fungal C2 domain f 99.6 1.7E-15 3.7E-20 147.0 10.4 99 347-463 1-107 (111)
69 cd04018 C2C_Ferlin C2 domain t 99.6 2.8E-15 6.1E-20 153.5 12.0 115 348-465 1-126 (151)
70 cd04017 C2D_Ferlin C2 domain f 99.6 8.1E-15 1.7E-19 147.3 15.0 118 348-485 2-134 (135)
71 cd04043 C2_Munc13_fungal C2 do 99.6 8.5E-15 1.8E-19 144.8 14.6 113 348-483 2-121 (126)
72 cd08383 C2A_RasGAP C2 domain ( 99.6 1.2E-14 2.5E-19 141.6 14.5 112 349-482 2-117 (117)
73 cd04030 C2C_KIAA1228 C2 domain 99.6 4.1E-15 8.9E-20 147.1 11.5 101 347-462 16-126 (127)
74 cd04039 C2_PSD C2 domain prese 99.6 5.3E-15 1.2E-19 143.3 11.5 96 347-454 1-99 (108)
75 cd04049 C2_putative_Elicitor-r 99.6 6.4E-15 1.4E-19 145.5 12.0 101 347-463 1-107 (124)
76 cd04040 C2D_Tricalbin-like C2 99.6 8.3E-15 1.8E-19 142.4 12.4 105 349-468 1-107 (115)
77 cd04031 C2A_RIM1alpha C2 domai 99.6 6E-15 1.3E-19 145.4 11.5 100 347-462 16-124 (125)
78 cd08386 C2A_Synaptotagmin-7 C2 99.6 7.7E-15 1.7E-19 144.9 12.1 102 347-463 16-124 (125)
79 cd08676 C2A_Munc13-like C2 dom 99.6 2.8E-15 6E-20 153.8 8.7 119 319-462 6-153 (153)
80 cd08392 C2A_SLP-3 C2 domain fi 99.6 6.3E-15 1.4E-19 147.1 10.7 102 346-462 14-127 (128)
81 cd04052 C2B_Tricalbin-like C2 99.6 9E-15 1.9E-19 142.1 11.4 98 382-485 12-111 (111)
82 cd08521 C2A_SLP C2 domain firs 99.6 9.1E-15 2E-19 143.7 11.5 102 346-462 13-123 (123)
83 cd04011 C2B_Ferlin C2 domain s 99.6 1.7E-14 3.7E-19 139.9 12.3 97 348-464 5-110 (111)
84 cd08384 C2B_Rabphilin_Doc2 C2 99.6 6.7E-15 1.4E-19 147.1 9.4 108 346-470 12-127 (133)
85 cd08680 C2_Kibra C2 domain fou 99.6 1.2E-14 2.6E-19 144.3 10.6 102 346-462 13-124 (124)
86 cd08690 C2_Freud-1 C2 domain f 99.6 3.3E-14 7.2E-19 146.0 13.9 118 349-484 4-138 (155)
87 cd08390 C2A_Synaptotagmin-15-1 99.5 3.1E-14 6.8E-19 140.0 11.9 103 346-463 13-122 (123)
88 cd08388 C2A_Synaptotagmin-4-11 99.5 3.3E-14 7.2E-19 141.8 12.0 102 347-463 16-127 (128)
89 cd00275 C2_PLC_like C2 domain 99.5 8.2E-14 1.8E-18 137.6 14.3 116 348-482 3-127 (128)
90 cd08404 C2B_Synaptotagmin-4 C2 99.5 2.1E-14 4.6E-19 144.3 10.0 108 346-470 14-129 (136)
91 cd08407 C2B_Synaptotagmin-13 C 99.5 1.5E-14 3.2E-19 146.2 8.0 111 346-471 14-132 (138)
92 cd08406 C2B_Synaptotagmin-12 C 99.5 1.9E-14 4.2E-19 145.1 8.9 108 346-470 14-129 (136)
93 cd08403 C2B_Synaptotagmin-3-5- 99.5 2E-14 4.4E-19 144.0 9.0 108 346-470 13-128 (134)
94 cd08675 C2B_RasGAP C2 domain s 99.5 4.4E-14 9.4E-19 142.6 11.4 101 349-465 1-121 (137)
95 cd08389 C2A_Synaptotagmin-14_1 99.5 4.1E-14 8.9E-19 140.3 10.9 101 347-463 16-123 (124)
96 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 3.7E-14 8.1E-19 147.1 10.7 103 345-462 25-136 (162)
97 cd08402 C2B_Synaptotagmin-1 C2 99.5 2.1E-14 4.5E-19 144.3 8.4 109 345-470 13-129 (136)
98 cd04032 C2_Perforin C2 domain 99.5 4.7E-14 1E-18 140.6 10.8 88 347-451 28-118 (127)
99 cd08405 C2B_Synaptotagmin-7 C2 99.5 3.2E-14 7E-19 142.9 9.0 108 346-470 14-129 (136)
100 cd04038 C2_ArfGAP C2 domain pr 99.5 7.6E-14 1.6E-18 142.2 11.7 93 347-456 2-95 (145)
101 cd04026 C2_PKC_alpha_gamma C2 99.5 8.1E-14 1.8E-18 138.9 11.6 107 344-466 10-123 (131)
102 cd00138 PLDc Phospholipase D. 99.5 2.2E-13 4.8E-18 141.8 14.9 144 545-759 21-169 (176)
103 cd00276 C2B_Synaptotagmin C2 d 99.5 3.5E-14 7.6E-19 141.4 8.5 107 347-470 14-128 (134)
104 cd08410 C2B_Synaptotagmin-17 C 99.5 4.7E-14 1E-18 141.9 8.4 109 346-470 13-129 (135)
105 KOG0696 Serine/threonine prote 99.5 1.3E-14 2.8E-19 162.9 4.0 103 347-465 180-289 (683)
106 cd08692 C2B_Tac2-N C2 domain s 99.5 9.5E-14 2.1E-18 139.2 9.7 109 346-470 13-129 (135)
107 cd04009 C2B_Munc13-like C2 dom 99.5 1.1E-13 2.4E-18 138.7 10.0 91 347-452 16-118 (133)
108 cd04048 C2A_Copine C2 domain f 99.5 1.6E-13 3.5E-18 134.9 10.9 97 352-463 5-113 (120)
109 cd04021 C2_E3_ubiquitin_ligase 99.5 3.7E-13 8.1E-18 133.6 13.6 116 348-480 3-124 (125)
110 cd08691 C2_NEDL1-like C2 domai 99.5 4.5E-13 9.8E-18 135.3 13.5 114 349-480 3-136 (137)
111 cd08409 C2B_Synaptotagmin-15 C 99.5 9.2E-14 2E-18 140.2 8.4 107 347-469 15-129 (137)
112 KOG1028 Ca2+-dependent phospho 99.5 6.1E-13 1.3E-17 157.2 15.7 177 347-544 167-352 (421)
113 cd04037 C2E_Ferlin C2 domain f 99.5 4.9E-13 1.1E-17 132.6 12.0 89 349-452 2-93 (124)
114 PLN03200 cellulose synthase-in 99.4 1.8E-13 3.9E-18 181.1 11.4 122 345-484 1978-2101(2102)
115 cd04035 C2A_Rabphilin_Doc2 C2 99.4 6.3E-13 1.4E-17 131.1 11.9 100 347-461 15-122 (123)
116 cd08408 C2B_Synaptotagmin-14_1 99.4 2.2E-13 4.7E-18 137.8 7.8 109 346-470 14-131 (138)
117 cd08686 C2_ABR C2 domain in th 99.4 1.4E-12 3E-17 127.7 12.3 104 349-482 1-118 (118)
118 PHA02820 phospholipase-D-like 99.4 3.2E-12 6.9E-17 151.4 17.3 126 840-1037 25-150 (424)
119 cd00138 PLDc Phospholipase D. 99.3 1.7E-11 3.7E-16 127.6 15.2 131 839-1039 19-152 (176)
120 PHA03003 palmytilated EEV memb 99.3 1.2E-11 2.6E-16 144.5 14.4 141 546-759 217-363 (369)
121 PRK13912 nuclease NucT; Provis 99.3 3.5E-11 7.7E-16 126.7 16.5 140 545-759 33-174 (177)
122 cd04047 C2B_Copine C2 domain s 99.3 1.3E-11 2.8E-16 119.3 10.8 87 351-453 4-101 (110)
123 PRK13912 nuclease NucT; Provis 99.3 3E-11 6.5E-16 127.3 14.3 128 840-1041 32-160 (177)
124 PRK12452 cardiolipin synthetas 99.3 2.8E-11 6E-16 146.7 13.1 153 514-759 328-480 (509)
125 KOG1011 Neurotransmitter relea 99.2 1.3E-11 2.7E-16 143.4 7.8 115 348-481 296-422 (1283)
126 PF00168 C2: C2 domain; Inter 99.2 3.6E-11 7.8E-16 108.9 9.1 81 349-444 1-85 (85)
127 KOG2059 Ras GTPase-activating 99.2 4.4E-11 9.6E-16 142.0 9.1 128 348-491 6-133 (800)
128 PF13091 PLDc_2: PLD-like doma 99.2 1.2E-10 2.5E-15 114.6 10.5 114 846-1040 1-114 (126)
129 KOG3603 Predicted phospholipas 99.2 1.1E-08 2.4E-13 117.1 27.6 341 546-1039 73-419 (456)
130 cd00030 C2 C2 domain. The C2 d 99.1 2.3E-10 5E-15 104.9 10.5 99 349-462 1-102 (102)
131 smart00239 C2 Protein kinase C 99.1 3E-10 6.5E-15 105.0 10.7 93 348-455 1-97 (101)
132 COG5038 Ca2+-dependent lipid-b 99.1 4.3E-10 9.3E-15 140.2 11.7 133 345-496 434-570 (1227)
133 COG5038 Ca2+-dependent lipid-b 99.1 4E-10 8.6E-15 140.5 10.3 132 337-485 1030-1163(1227)
134 PF13091 PLDc_2: PLD-like doma 99.0 1.2E-09 2.5E-14 107.5 10.9 124 550-756 1-126 (126)
135 KOG1028 Ca2+-dependent phospho 99.0 1.1E-09 2.4E-14 129.8 8.2 109 346-471 297-413 (421)
136 KOG1328 Synaptic vesicle prote 98.9 1.1E-10 2.4E-15 137.9 -1.0 150 317-489 90-307 (1103)
137 PRK01642 cls cardiolipin synth 98.9 7E-09 1.5E-13 125.5 13.7 152 514-759 302-454 (483)
138 cd08374 C2F_Ferlin C2 domain s 98.9 7.4E-09 1.6E-13 104.0 10.1 93 349-454 2-125 (133)
139 PRK11263 cardiolipin synthase 98.8 3.7E-08 8E-13 116.7 14.2 134 840-1039 17-154 (411)
140 smart00149 PLCYc Phospholipase 98.8 5.1E-10 1.1E-14 109.1 -1.5 58 286-350 41-101 (115)
141 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.5E-08 3.2E-13 96.8 8.4 85 349-452 1-88 (109)
142 PRK05443 polyphosphate kinase; 98.8 3.3E-08 7.2E-13 122.9 13.5 119 844-1041 351-481 (691)
143 cd08625 PI-PLCc_beta3 Catalyti 98.7 1.5E-09 3.3E-14 119.5 -0.1 57 286-349 196-255 (258)
144 KOG1031 Predicted Ca2+-depende 98.7 2.1E-08 4.6E-13 116.1 9.0 120 345-482 1-135 (1169)
145 cd08630 PI-PLCc_delta3 Catalyt 98.7 1.6E-09 3.4E-14 119.0 -0.9 57 286-349 196-255 (258)
146 cd08627 PI-PLCc_gamma1 Catalyt 98.7 2.6E-09 5.6E-14 115.1 0.5 56 287-349 168-226 (229)
147 cd08592 PI-PLCc_gamma Catalyti 98.7 1.7E-09 3.6E-14 117.0 -1.0 57 286-349 167-226 (229)
148 cd08595 PI-PLCc_zeta Catalytic 98.7 2E-09 4.4E-14 118.0 -0.4 57 286-349 195-254 (257)
149 cd08624 PI-PLCc_beta2 Catalyti 98.7 1.8E-09 3.9E-14 118.6 -0.8 58 286-350 199-259 (261)
150 cd08633 PI-PLCc_eta2 Catalytic 98.7 2.1E-09 4.6E-14 117.4 -0.5 58 285-349 191-251 (254)
151 cd08628 PI-PLCc_gamma2 Catalyt 98.7 2E-09 4.4E-14 118.0 -0.8 57 286-349 192-251 (254)
152 cd08596 PI-PLCc_epsilon Cataly 98.7 1.9E-09 4.2E-14 118.0 -1.2 57 286-349 192-251 (254)
153 cd08629 PI-PLCc_delta1 Catalyt 98.7 3E-09 6.4E-14 116.6 0.1 57 286-349 196-255 (258)
154 cd08597 PI-PLCc_PRIP_metazoa C 98.7 2.4E-09 5.1E-14 118.1 -0.7 57 286-349 198-257 (260)
155 cd08623 PI-PLCc_beta1 Catalyti 98.7 3E-09 6.6E-14 116.7 -0.5 57 286-349 196-255 (258)
156 cd08594 PI-PLCc_eta Catalytic 98.7 3.3E-09 7.1E-14 114.3 -0.3 57 286-349 165-224 (227)
157 cd08631 PI-PLCc_delta4 Catalyt 98.7 2.8E-09 6.1E-14 117.0 -0.9 57 286-349 196-255 (258)
158 cd08632 PI-PLCc_eta1 Catalytic 98.7 3.1E-09 6.8E-14 115.8 -1.1 58 286-350 191-251 (253)
159 cd08626 PI-PLCc_beta4 Catalyti 98.7 4E-09 8.7E-14 115.7 -0.4 58 286-350 195-255 (257)
160 cd08599 PI-PLCc_plant Catalyti 98.6 5.3E-09 1.1E-13 113.3 -0.7 57 286-349 166-225 (228)
161 PF00614 PLDc: Phospholipase D 98.6 9.5E-09 2.1E-13 75.4 0.9 27 662-696 2-28 (28)
162 KOG3603 Predicted phospholipas 98.6 5.9E-07 1.3E-11 103.3 15.4 157 546-760 277-440 (456)
163 cd08591 PI-PLCc_beta Catalytic 98.6 8.5E-09 1.8E-13 113.2 -0.4 57 286-349 195-254 (257)
164 cd08598 PI-PLC1c_yeast Catalyt 98.6 6.1E-09 1.3E-13 112.9 -1.7 57 286-349 169-228 (231)
165 cd08558 PI-PLCc_eukaryota Cata 98.6 8.3E-09 1.8E-13 111.6 -0.7 57 286-349 164-223 (226)
166 cd08593 PI-PLCc_delta Catalyti 98.6 1E-08 2.2E-13 112.9 -0.5 57 286-349 195-254 (257)
167 PRK09428 pssA phosphatidylseri 98.5 8.2E-07 1.8E-11 106.3 14.8 136 841-1039 35-178 (451)
168 KOG1328 Synaptic vesicle prote 98.5 6.1E-08 1.3E-12 115.3 2.2 89 348-451 948-1048(1103)
169 PF00387 PI-PLC-Y: Phosphatidy 98.4 8.5E-09 1.8E-13 101.3 -5.9 54 287-347 44-100 (118)
170 smart00155 PLDc Phospholipase 98.3 4E-07 8.7E-12 67.0 3.4 26 997-1022 3-28 (28)
171 COG1502 Cls Phosphatidylserine 98.2 7.2E-06 1.6E-10 98.0 11.5 135 548-759 273-409 (438)
172 KOG2059 Ras GTPase-activating 98.0 9.2E-06 2E-10 97.8 7.0 105 383-487 151-280 (800)
173 PF00614 PLDc: Phospholipase D 97.9 4.7E-06 1E-10 61.3 1.7 26 997-1022 3-28 (28)
174 cd08683 C2_C2cd3 C2 domain fou 97.7 5.2E-05 1.1E-09 75.0 6.4 112 349-462 1-143 (143)
175 KOG3964 Phosphatidylglycerolph 97.7 0.0099 2.2E-07 68.5 23.5 130 543-698 37-171 (469)
176 KOG1326 Membrane-associated pr 97.5 5.4E-05 1.2E-09 94.2 3.4 121 348-492 614-738 (1105)
177 KOG1013 Synaptic vesicle prote 97.5 3.4E-05 7.5E-10 86.3 1.4 128 348-490 94-236 (362)
178 TIGR03705 poly_P_kin polyphosp 97.5 0.0013 2.8E-08 82.3 14.8 119 844-1041 342-472 (672)
179 KOG1011 Neurotransmitter relea 97.4 0.00033 7.2E-09 83.2 7.9 100 348-463 1126-1236(1283)
180 KOG0905 Phosphoinositide 3-kin 97.4 0.00011 2.5E-09 92.2 4.3 106 342-462 1519-1633(1639)
181 PF13918 PLDc_3: PLD-like doma 97.3 0.00069 1.5E-08 71.2 8.7 57 546-604 83-140 (177)
182 KOG1013 Synaptic vesicle prote 97.3 0.00024 5.1E-09 79.8 4.8 98 348-462 234-339 (362)
183 PLN02964 phosphatidylserine de 97.1 0.0004 8.7E-09 86.1 4.6 102 345-468 52-157 (644)
184 PLN02866 phospholipase D 97.1 0.0015 3.3E-08 83.5 9.6 62 840-908 343-404 (1068)
185 smart00155 PLDc Phospholipase 97.0 0.00051 1.1E-08 50.6 2.9 25 663-695 3-27 (28)
186 PF07894 DUF1669: Protein of u 96.9 0.0038 8.1E-08 70.2 9.8 161 514-756 118-278 (284)
187 KOG2060 Rab3 effector RIM1 and 96.9 0.001 2.3E-08 75.9 5.3 109 345-467 267-382 (405)
188 PF13090 PP_kinase_C: Polyphos 96.1 0.82 1.8E-05 53.0 22.1 137 545-754 18-160 (352)
189 PF07894 DUF1669: Protein of u 96.1 0.025 5.5E-07 63.7 9.6 131 841-1037 134-264 (284)
190 KOG1326 Membrane-associated pr 95.9 0.0025 5.5E-08 80.0 1.1 99 349-464 208-317 (1105)
191 cd00137 PI-PLCc Catalytic doma 95.8 0.0016 3.5E-08 73.7 -1.4 57 289-349 203-271 (274)
192 PLN02352 phospholipase D epsil 95.7 0.037 8.1E-07 69.7 9.6 61 544-604 452-519 (758)
193 KOG3837 Uncharacterized conser 95.6 0.012 2.7E-07 67.9 4.6 98 383-483 388-503 (523)
194 COG0855 Ppk Polyphosphate kina 95.5 0.81 1.8E-05 56.5 19.5 96 541-675 348-448 (696)
195 PF13918 PLDc_3: PLD-like doma 95.5 0.11 2.4E-06 55.0 10.8 55 843-911 84-144 (177)
196 KOG1327 Copine [Signal transdu 95.4 0.026 5.7E-07 68.1 6.5 84 353-452 142-236 (529)
197 PF10358 NT-C2: N-terminal C2 95.0 0.37 8.1E-06 48.7 12.9 119 348-489 8-141 (143)
198 cd08684 C2A_Tac2-N C2 domain f 94.9 0.022 4.7E-07 53.3 3.0 95 351-461 3-102 (103)
199 KOG1329 Phospholipase D1 [Lipi 94.5 0.16 3.5E-06 64.3 10.2 62 538-604 559-627 (887)
200 PF12416 DUF3668: Cep120 prote 94.3 0.34 7.3E-06 56.5 11.7 120 349-487 2-136 (340)
201 cd08398 C2_PI3K_class_I_alpha 94.3 0.26 5.6E-06 51.5 9.8 107 343-485 4-124 (158)
202 COG3886 Predicted HKD family n 94.1 0.65 1.4E-05 49.5 12.1 139 545-757 39-178 (198)
203 PLN03008 Phospholipase D delta 93.5 0.31 6.8E-06 62.1 10.2 60 545-604 567-633 (868)
204 PF11495 Regulator_TrmB: Archa 93.3 0.16 3.4E-06 56.3 6.5 49 545-606 10-58 (233)
205 PLN02270 phospholipase D alpha 93.2 0.29 6.2E-06 62.3 9.2 62 543-604 497-569 (808)
206 cd08693 C2_PI3K_class_I_beta_d 92.5 0.87 1.9E-05 48.3 10.3 75 343-434 4-87 (173)
207 KOG1452 Predicted Rho GTPase-a 91.1 0.38 8.2E-06 54.3 5.9 80 341-434 45-124 (442)
208 PF15627 CEP76-C2: CEP76 C2 do 90.0 2.7 5.9E-05 43.8 10.7 103 383-486 34-153 (156)
209 cd08399 C2_PI3K_class_I_gamma 89.7 3.5 7.5E-05 44.1 11.5 125 343-487 6-142 (178)
210 cd08380 C2_PI3K_like C2 domain 89.5 1.9 4.2E-05 44.6 9.3 87 347-449 8-106 (156)
211 cd04012 C2A_PI3K_class_II C2 d 88.7 4 8.6E-05 43.2 11.1 88 345-447 6-116 (171)
212 cd08397 C2_PI3K_class_III C2 d 87.3 1.9 4.1E-05 45.2 7.6 65 383-447 30-104 (159)
213 PF15625 CC2D2AN-C2: CC2D2A N- 86.0 2.9 6.3E-05 44.1 8.2 69 383-451 37-107 (168)
214 cd08687 C2_PKN-like C2 domain 85.3 4.9 0.00011 38.3 8.2 84 383-482 9-92 (98)
215 PF13090 PP_kinase_C: Polyphos 85.2 2.1 4.6E-05 49.8 7.2 94 886-1041 51-151 (352)
216 PF14429 DOCK-C2: C2 domain in 81.3 4.5 9.7E-05 43.1 7.4 53 397-449 61-120 (184)
217 COG0855 Ppk Polyphosphate kina 80.7 6.8 0.00015 48.8 9.4 42 998-1041 437-485 (696)
218 PF09565 RE_NgoFVII: NgoFVII r 79.9 11 0.00023 43.5 10.2 41 997-1039 79-124 (296)
219 cd08695 C2_Dock-B C2 domains f 79.3 15 0.00032 39.7 10.4 51 397-447 55-111 (189)
220 KOG1327 Copine [Signal transdu 78.8 4.4 9.6E-05 49.6 7.0 85 394-481 40-130 (529)
221 PF00792 PI3K_C2: Phosphoinosi 78.5 8.7 0.00019 39.2 8.2 66 384-449 3-84 (142)
222 PF11618 DUF3250: Protein of u 77.7 12 0.00025 36.8 8.4 94 386-483 2-105 (107)
223 KOG4269 Rac GTPase-activating 74.6 7.2 0.00016 49.9 7.3 119 343-489 755-888 (1112)
224 smart00142 PI3K_C2 Phosphoinos 71.6 20 0.00044 34.4 8.3 51 383-433 32-91 (100)
225 cd08694 C2_Dock-A C2 domains f 71.0 14 0.0003 40.1 7.6 52 397-448 55-114 (196)
226 cd08679 C2_DOCK180_related C2 67.9 14 0.0003 39.3 6.8 51 399-449 56-115 (178)
227 COG3886 Predicted HKD family n 66.6 60 0.0013 35.1 11.0 52 840-910 38-90 (198)
228 KOG0694 Serine/threonine prote 65.0 2.4 5.2E-05 52.9 0.5 92 383-483 28-121 (694)
229 cd08696 C2_Dock-C C2 domains f 64.8 22 0.00047 38.1 7.5 39 396-434 55-96 (179)
230 KOG3964 Phosphatidylglycerolph 61.9 8.9 0.00019 45.2 4.2 54 841-910 39-92 (469)
231 PF06087 Tyr-DNA_phospho: Tyro 60.7 5.7 0.00012 48.3 2.6 42 994-1036 344-402 (443)
232 cd08697 C2_Dock-D C2 domains f 54.4 48 0.001 35.8 7.9 39 396-434 57-98 (185)
233 PF11495 Regulator_TrmB: Archa 47.6 33 0.00071 38.0 5.7 51 839-909 8-58 (233)
234 KOG1924 RhoA GTPase effector D 46.3 40 0.00087 43.0 6.5 13 439-451 707-719 (1102)
235 KOG2236 Uncharacterized conser 46.0 33 0.00071 41.4 5.5 12 47-58 453-464 (483)
236 KOG3543 Ca2+-dependent activat 43.6 1.2E+02 0.0025 38.0 9.5 113 348-482 342-458 (1218)
237 PTZ00447 apical membrane antig 39.8 1.7E+02 0.0038 34.3 9.7 109 348-483 59-171 (508)
238 cd05137 RasGAP_CLA2_BUD2 CLA2/ 37.9 35 0.00075 41.1 4.2 44 439-484 1-45 (395)
239 PF06219 DUF1005: Protein of u 37.8 3.4E+02 0.0075 32.9 12.0 100 383-484 36-168 (460)
240 KOG0260 RNA polymerase II, lar 35.5 1.8E+02 0.004 39.2 10.0 6 228-233 1455-1460(1605)
241 PF06415 iPGM_N: BPG-independe 32.3 1E+02 0.0022 34.3 6.4 49 548-604 14-67 (223)
242 KOG0119 Splicing factor 1/bran 31.9 1.7E+02 0.0037 35.9 8.5 24 114-139 466-489 (554)
243 PF07615 Ykof: YKOF-related Fa 31.9 1.4E+02 0.003 27.9 6.3 69 514-604 3-72 (81)
244 KOG0917 Uncharacterized conser 30.3 2.8E+02 0.006 31.7 9.1 32 85-116 246-277 (338)
245 KOG4849 mRNA cleavage factor I 26.3 1.3E+02 0.0029 35.1 6.0 21 83-103 314-334 (498)
246 PF06087 Tyr-DNA_phospho: Tyro 22.2 60 0.0013 39.7 2.6 37 998-1037 101-141 (443)
247 KOG1120 Fe-S cluster biosynthe 21.9 36 0.00079 34.3 0.6 21 172-192 102-122 (134)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=2.7e-177 Score=1581.53 Aligned_cols=803 Identities=57% Similarity=0.995 Sum_probs=729.8
Q ss_pred CCCcceeeeceEEEEEEEEeeCCCCCCCCCcccccccc------------------------c---cCCCCCCCCcEEEE
Q 001122 337 KGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFN------------------------S---QMNTKITSDPYVTI 389 (1149)
Q Consensus 337 ~~~~~~~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~------------------------k---~~~~~~~sDPYV~V 389 (1149)
+-++.+.|+||+|.|+|++|++|++||++.++++.++. | ++.+++++||||+|
T Consensus 4 ~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I 83 (868)
T PLN03008 4 KVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTV 83 (868)
T ss_pred ccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEE
Confidence 45667889999999999999999999987664444432 0 12336679999999
Q ss_pred EECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeeeecCCCCCC
Q 001122 390 AVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 469 (1149)
Q Consensus 390 ~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~ 469 (1149)
.+++++++||+|++++.||+|||+|+|.|+++...|.|+|+|+|.+++++||++.|||++|..|..++.|++|++..|++
T Consensus 84 ~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp 163 (868)
T PLN03008 84 VVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKP 163 (868)
T ss_pred EECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCC
Confidence 99998888999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEEeecccccccccCCCCCCCCCCCCCCCCCCccccceeEecccccCCCCCCCceeecCCCccchhHHHHH
Q 001122 470 CKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYD 549 (1149)
Q Consensus 470 ~~~~g~L~L~l~f~p~~~d~~~~~Gv~~~~~~~~vp~~~~p~~~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~a 549 (1149)
++++++|+|+|+|+|+++++.|.+||+.+++|.|||.||||+|+||+||||||+|++|+++|.|.|++|+.|.+++||++
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwed 243 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWED 243 (868)
T ss_pred CCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEEeccceeeEEeCCC--CchHHHHHHHHHHHhhcCCcEEEEEecCCCcccccccccccccccccH
Q 001122 550 ICNAISQAQRLIYITGWSVWHKVKLVRDAS--PALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDE 627 (1149)
Q Consensus 550 l~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~--~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~~ 627 (1149)
|++||++||++|||++||++|+++|+|+.. ...+.+|++||++||+|||+|+|||||+.+|...++++..|+|.|+++
T Consensus 244 i~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thde 323 (868)
T PLN03008 244 ICYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDE 323 (868)
T ss_pred HHHHHHhhhheEEEeceeecceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccH
Confidence 999999999999999999999999999863 124689999999999999999999999999987777889999999999
Q ss_pred HHHHHhhcCCcEEEEccCcccccccccccc-----------cccccccccceeEEecCCCCCCCccEEEEEccccCCCCC
Q 001122 628 ETRRVFKHSSVKVLLCPRIAGKRHSWAKQK-----------EVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 696 (1149)
Q Consensus 628 ~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~-----------~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgR 696 (1149)
+++++|+|++|.|.+||+..+...+|+++. ..+++|+||||+||||++.++++|+++|||||+|||+||
T Consensus 324 et~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gR 403 (868)
T PLN03008 324 ETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGR 403 (868)
T ss_pred HHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCc
Confidence 999999999999999998877677777652 456789999999999998777789999999999999999
Q ss_pred CCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCC----cccc-Ccc
Q 001122 697 YDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHG----IKKL-KSG 771 (1149)
Q Consensus 697 wDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~at~~~~----~~~l-~~~ 771 (1149)
|||+.|++++++++.|++||+|+++.+ ..+.+++||||+|++|+||||++|+.+|++||+++++... .++. ...
T Consensus 404 wDT~~H~l~~~l~t~~~~D~~np~~~~-~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~ 482 (868)
T PLN03008 404 YDTPEHRILHDLDTVFKDDFHNPTFPA-GTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQ 482 (868)
T ss_pred cCCcCCCccccccccccccccCccccC-CCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccccc
Confidence 999999999999999999999998754 3457899999999999999999999999999999987431 1111 123
Q ss_pred hhhhhhhccCCCccCCCC-------------CC---CcccCCCCCceEEEEEeccCCcccccCCCChhhhhccccccCcc
Q 001122 772 DDALLRIERIPGIIGISD-------------AP---SVRENDAESWHVQVIFRSIDSTSVRGFPKDPKEATSKNLVCGKN 835 (1149)
Q Consensus 772 ~~~ll~~~~~p~~~~~~~-------------~p---~~~~~~~~~~~VQ~vlRS~~~~s~~~fP~~P~~~~~~~l~~g~~ 835 (1149)
++.++.+++++.++.+.. .+ ...+.++++|.|| +|||++.|++++||+.+.+++.++++|||+
T Consensus 483 ~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQ-ifRSId~~sa~g~P~~~~~~~~~~l~~gk~ 561 (868)
T PLN03008 483 DDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQ-IFRSIDSGSVKGFPKYEDEAEAQHLECAKR 561 (868)
T ss_pred cchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccc-eeeecCchhhcCCCCCcchhhhhccccccc
Confidence 566666677655443210 00 0112566889999 999999999999999999998999999999
Q ss_pred ccchHHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCC
Q 001122 836 VLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVP 915 (1149)
Q Consensus 836 ~~~e~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p 915 (1149)
..+|+||++||++||++||||||||||||+++++.|+++++.++.|+|+++|+++|++||+++++|+|+||+|+||||.+
T Consensus 562 ~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~ 641 (868)
T PLN03008 562 LVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDP 641 (868)
T ss_pred cchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcc
Q 001122 916 TGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRF 995 (1149)
Q Consensus 916 ~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~ 995 (1149)
.+++.|.|++|+++||+|||.+++++|+++|.+. +|.+|++|||||||+.... ..++..++.+..++++|++
T Consensus 642 ~sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~--~p~dyl~fy~L~~~e~~~~------~~~~~~~~~~~~a~~~rr~ 713 (868)
T PLN03008 642 KSGPVQEILYWQSQTMQMMYDVIAKELKAVQSDA--HPLDYLNFYCLGKREQLPD------DMPATNGSVVSDSYNFQRF 713 (868)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CccCEEEEecccccccccC------CCCCCCCchhhhhhhccce
Confidence 9999999999999999999999999999988654 4889999999999987532 1234455666778899999
Q ss_pred cceeeeEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeCcchhhhhccCCCCchhHHHHHHHHHHHhCCCccccCCC
Q 001122 996 MIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQP 1075 (1149)
Q Consensus 996 ~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~~~~~~~~~~g~i~~lR~~Lw~EHlG~~~~~f~~p 1075 (1149)
+||||||+|||||++++|||||||+|||.|+||+||++.++++.++|+...+.++|+|++||++||+||||+.++.|.+|
T Consensus 714 ~IYvHsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p 793 (868)
T PLN03008 714 MIYVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEP 793 (868)
T ss_pred eEEEeeeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCC
Confidence 99999999999999999999999999999999999999999999998777778999999999999999999999999999
Q ss_pred cchhHHHHHhhhhhhhhhHhhhhhhcccccccccCcceeCCCCCccCCCCCCCCCCCCCccccccC-CCCcCCCC
Q 001122 1076 ETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFF-AIQENLTI 1149 (1149)
Q Consensus 1076 ~s~~~~~~v~~~~~~nw~~~a~~~~~~~~ghL~~~p~~~~~~g~~~~~~g~~~fpd~~~~i~g~~~-~~~~~~~~ 1149 (1149)
++++|+++||++|++||++|+++++++|+|||++||+.|+.+|+|++|||+|+||||+|+|+|++. .||++|||
T Consensus 794 ~s~ecv~~vn~~a~~~w~~y~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 794 SDLECLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccccccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999996 89999997
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=2.7e-167 Score=1497.64 Aligned_cols=786 Identities=46% Similarity=0.842 Sum_probs=700.1
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccc---c-CCCCCCCCcEEEEEECCEEEeeeeeeeC-CCCCeeceEEEEE
Q 001122 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNS---Q-MNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVP 417 (1149)
Q Consensus 343 ~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k---~-~~~~~~sDPYV~V~l~~~~~~rTkVi~n-t~NPvWNE~F~f~ 417 (1149)
.|+||+|+|+|++|++|++++. .+.+++++.. . ...++++||||+|.+++++++||+|+.| ..||+|||+|.++
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe
Confidence 4899999999999999998654 2222322221 0 1124569999999999999999999998 5799999999999
Q ss_pred ccCCCcEEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeecccccccccCCCCC
Q 001122 418 VAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGE 497 (1149)
Q Consensus 418 v~~~~~~L~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~~~d~~~~~Gv~~ 497 (1149)
|+|..+.|.|+|+|.|.++..+||.+.||+++|.+|+.+++||+|++.+||+++++.+|+|+|+|+|+++++.|.+||..
T Consensus 83 ~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~~gv~~ 162 (808)
T PLN02270 83 CAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGIRS 162 (808)
T ss_pred eccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcchhcccCC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999964
Q ss_pred CCCCCCCCCCCCCccccceeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeC
Q 001122 498 GPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRD 577 (1149)
Q Consensus 498 ~~~~~~vp~~~~p~~~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd 577 (1149)
++|.|+|.||||+|+||+||||||+|++|+++|.|.|++|+.|.++.||++|++||++||++|||++|+|+++|+|+|+
T Consensus 163 -~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d~~i~LvRd 241 (808)
T PLN02270 163 -AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRD 241 (808)
T ss_pred -cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEEeecCCCceEecC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC---chHHHHHHHHHHHhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCccccccccc
Q 001122 578 ASP---ALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWA 654 (1149)
Q Consensus 578 ~~~---~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~ 654 (1149)
+.. +...+|+++|++||++||+|+||+||+.++... ++..|+|.|++++++++|++.+|+|+++++.......|+
T Consensus 242 ~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t~~~f~~~~V~~~L~~r~P~~~~~~~ 319 (808)
T PLN02270 242 SRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEETENFFRGTDVHCILCPRNPDDGGSIV 319 (808)
T ss_pred CCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHHHHHhccCCceEEEcCCCccccccee
Confidence 542 245799999999999999999999999887644 456789999999999999999999999998766555666
Q ss_pred ccccccccccccceeEEecCCCCC---CCccEEEEEccccCCCCCCCCCCCCcccccccccCCCCCCCcccCC--CCCCC
Q 001122 655 KQKEVGTIYTHHQKTVIVDADAGY---NRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGN--TTGCP 729 (1149)
Q Consensus 655 ~~~~~~~~~~HHQKiVVVD~~~~~---~~r~~vAFVGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~--~~~~p 729 (1149)
++...++.++||||+||||++.++ ++|+++|||||+|||+|||||++|++|+++++.|++||+||.|.+. ..++|
T Consensus 320 ~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~p~~~~~~~~~g~P 399 (808)
T PLN02270 320 QDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGP 399 (808)
T ss_pred eccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccCcccccccccCCCC
Confidence 666677889999999999997543 4799999999999999999999999999999999999999998763 46789
Q ss_pred CCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccccCcchhhhhhhccCCCccCCCCCCCcccCCCCCceEEEEEec
Q 001122 730 REPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQVIFRS 809 (1149)
Q Consensus 730 r~PWHDv~vrI~GPaa~Dl~~~F~qrWn~at~~~~~~~l~~~~~~ll~~~~~p~~~~~~~~p~~~~~~~~~~~VQ~vlRS 809 (1149)
|+||||+||+|+||+|++|+.+|++||+.+++.... ..+.++..+..+. .+...+.+.++|.|| +|||
T Consensus 400 r~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~ll----------~~~~~~~~~~~P~-~~~~~p~d~~~w~VQ-vfRS 467 (808)
T PLN02270 400 REPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDIL----------VQLRELEDVIIPP-SPVMFPDDHEVWNVQ-LFRS 467 (808)
T ss_pred CCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccch----------hhhcccccccCCC-CcccCCCcCCccccc-eeec
Confidence 999999999999999999999999999998875321 1111111111111 111122456789999 9999
Q ss_pred cCCcccccCCCChhhhhccccccCccccchHHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccc----cccCcCCccHH
Q 001122 810 IDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSY----RDLGANNLIPM 885 (1149)
Q Consensus 810 ~~~~s~~~fP~~P~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~----~~~g~~n~I~~ 885 (1149)
++.+++++||+.|.++..+++++|++..++++|+.+|++||++||||||||||||+++++.|+.+ ++.|+.|+||+
T Consensus 468 id~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~ 547 (808)
T PLN02270 468 IDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPK 547 (808)
T ss_pred ccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchH
Confidence 99999999999999888888999988888999999999999999999999999999999999865 78899999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCc
Q 001122 886 EIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNR 965 (1149)
Q Consensus 886 ~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~r 965 (1149)
+|+++|++||+++++|+|+||+|+||||.+++.+.|+||+||++||+||+.+++++|+++|+.. +|++||+||||+||
T Consensus 548 el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~--dp~dyL~ff~L~nr 625 (808)
T PLN02270 548 ELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEE--DPRNYLTFFCLGNR 625 (808)
T ss_pred HHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccC--CccceEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999753 58899999999999
Q ss_pred ccccccCCCCCCCCCCCCChhhhccccCcccceeeeEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeCcchhhhhc
Q 001122 966 EVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARM 1045 (1149)
Q Consensus 966 e~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~~~~~ 1045 (1149)
|.....+..+ ...+..++++..++++++++||||||+|||||+|++|||||||+|||.|++||||+|++++|.++.+.
T Consensus 626 e~~~~g~~~P-~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~~~- 703 (808)
T PLN02270 626 EVKKSGEYEP-SEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTR- 703 (808)
T ss_pred ccccCcccCC-ccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccccCCccchhhhcccCccccccc-
Confidence 9654322111 11233456677888999999999999999999999999999999999999999999999999877543
Q ss_pred cCCCCchhHHHHHHHHHHHhCCCccccCCCcchhHHHHHhhhhhhhhhHhhhhhh-cccccccccCcceeCCCCCccCCC
Q 001122 1046 KRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQ-SEMRSHLIKYPVEVDRKGKVRPIP 1124 (1149)
Q Consensus 1046 ~~~~~g~i~~lR~~Lw~EHlG~~~~~f~~p~s~~~~~~v~~~~~~nw~~~a~~~~-~~~~ghL~~~p~~~~~~g~~~~~~ 1124 (1149)
..++++|++|||+||+||||+.++.|.+|+|++|+++||++|++||++|+++++ .+|+|||++||+.|+.+|+|++||
T Consensus 704 -~~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~~~~~ghl~~yp~~v~~~g~v~~l~ 782 (808)
T PLN02270 704 -QPARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLEHDLPGHLLRYPIGVASEGDITELP 782 (808)
T ss_pred -cchHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccCCCCCcccccCceEecCCCcEeeCC
Confidence 367899999999999999999999999999999999999999999999999999 589999999999999999999999
Q ss_pred CCCCCCCCCCccccccC-CCCcCCCC
Q 001122 1125 GYETFPDVGGNIVGSFF-AIQENLTI 1149 (1149)
Q Consensus 1125 g~~~fpd~~~~i~g~~~-~~~~~~~~ 1149 (1149)
|+|+||||+|+|+|++. .||++|||
T Consensus 783 g~~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 783 GTEFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CCCcCCCCCCceeccccccCCccccC
Confidence 99999999999999996 89999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=1.5e-160 Score=1438.38 Aligned_cols=740 Identities=43% Similarity=0.744 Sum_probs=648.2
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 342 ~~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
-.|+||+|++||++|+-+. +.+.. ...++ ...||||+|.+++++++|| .+..||+|||+|.++|+|.
T Consensus 5 ~~~lhg~l~~~i~~~~~~~--~~~~~--~~~~~------~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~ 71 (758)
T PLN02352 5 QKFFHGTLEATIFDATPYT--PPFPF--NCIFL------NGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP 71 (758)
T ss_pred ccccccceEEEEEEeeehh--hcccc--ccccc------CCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee
Confidence 3589999999999999432 11110 00010 1149999999999999999 6677999999999999999
Q ss_pred C-cEEEEEEEEccCCCCcceeeEEEeceeeccCCc-eeeeeeecCCCCCCCCCCCcEEEEEEeecccccccccCCCCCCC
Q 001122 422 A-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGK-VEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGP 499 (1149)
Q Consensus 422 ~-~~L~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~-~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~~~d~~~~~Gv~~~~ 499 (1149)
. +.|.|+|+| +..+||.+.||+++|.+|+. +++||+|++.+||++++ .+|+|+|+|+|+++++.|.+||.. +
T Consensus 72 ~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~ 145 (758)
T PLN02352 72 LDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAELEPTWCKILEN-G 145 (758)
T ss_pred cCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhhCcchhhcccC-C
Confidence 8 799999999 58899999999999999966 99999999999999865 799999999999999999999965 6
Q ss_pred CCCCCCCCCCCccccceeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCC
Q 001122 500 DYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS 579 (1149)
Q Consensus 500 ~~~~vp~~~~p~~~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~ 579 (1149)
+|.|+|.+|||+|+||+|+||||+|++|+++|.|.+ .|.+.+||++|++||++||++|||++|+|+++|+|+|++.
T Consensus 146 ~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~ 221 (758)
T PLN02352 146 SFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDPE 221 (758)
T ss_pred CcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEEEEecCCceeccCcc
Confidence 999999999999999999999999999999999988 5788899999999999999999999999999999999863
Q ss_pred C----chHHHHHHHHHHHhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCcccccccccc
Q 001122 580 P----ALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAK 655 (1149)
Q Consensus 580 ~----~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~ 655 (1149)
. ..+.+|+++|++||+|||+||||+||+.++... ++..|+|.++++++.++|+|.+|+|+++|+...
T Consensus 222 ~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~~~~~~f~h~~V~~~l~pr~~~------- 292 (758)
T PLN02352 222 TDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDEDAFAYFKHTKVVCKLCPRLHK------- 292 (758)
T ss_pred cccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchHHHHhhccCCceEEeecccccc-------
Confidence 1 357999999999999999999999999887644 456788999999999999999999999987532
Q ss_pred cccccccccccceeEEecCCCCC--CCccEEEEEccccCCCCCCCCCCCCcccccccc-cCCCCCCCcccCC--CCCCCC
Q 001122 656 QKEVGTIYTHHQKTVIVDADAGY--NRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTL-HKDDYHNPTFTGN--TTGCPR 730 (1149)
Q Consensus 656 ~~~~~~~~~HHQKiVVVD~~~~~--~~r~~vAFVGGiDL~dgRwDt~~H~l~~~l~~~-~~~Dy~np~~~~~--~~~~pr 730 (1149)
..++.|+||||+||||+++++ ++|+++|||||||||+|||||++|++++++++. |++||+|+.|.+. ..++||
T Consensus 293 --~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~PR 370 (758)
T PLN02352 293 --KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPR 370 (758)
T ss_pred --ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccccccccccccccCCCCCCC
Confidence 235679999999999997543 468889999999999999999999999999875 7799999999864 467899
Q ss_pred CCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccccCcchhhhhhhccCCCccCCCCCCCcccCCCCCceEEEEEecc
Q 001122 731 EPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQVIFRSI 810 (1149)
Q Consensus 731 ~PWHDv~vrI~GPaa~Dl~~~F~qrWn~at~~~~~~~l~~~~~~ll~~~~~p~~~~~~~~p~~~~~~~~~~~VQ~vlRS~ 810 (1149)
+||||+||+|+||||+||++||+|||+++++... ++...+++.+..++. .+..+.++|.|| ++||+
T Consensus 371 ~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~~----------l~p~~~~~~~~~~p~---~~~~~~~~w~VQ-v~RSi 436 (758)
T PLN02352 371 EPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPSV----------LVPTSSIRNLVHQPG---SSESNNRNWKVQ-VYRSI 436 (758)
T ss_pred CCcEeEEEEEECHHHHHHHHHHHHHHhhccCccc----------cCCcccccccccCCC---CCcccCCcccce-EEEec
Confidence 9999999999999999999999999999876431 111111111111110 112346789999 99999
Q ss_pred CCcccccCCCChhhhhccccccCccccchHHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHH
Q 001122 811 DSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALK 890 (1149)
Q Consensus 811 ~~~s~~~fP~~P~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~ 890 (1149)
+.|++++||.. ..+|+||++||++||++||||||||||||+++++.|+..++.++.|+|+++|+++
T Consensus 437 d~~sa~~~P~~--------------~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~k 502 (758)
T PLN02352 437 DHVSASHMPRN--------------LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALK 502 (758)
T ss_pred CccccccCCCC--------------CchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHH
Confidence 99999988742 2358999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccc
Q 001122 891 IADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQ 970 (1149)
Q Consensus 891 Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~ 970 (1149)
|++||+++++|+|+||+|+||||.+++.+.|+|++|+++||+|||.+|.++|+++|.+. +|++||+|||||||+....
T Consensus 503 I~~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~--~P~dYl~F~cL~n~e~~~~ 580 (758)
T PLN02352 503 IASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPG--HPRDYLNFFCLANREEKRK 580 (758)
T ss_pred HHHHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccC--ChhHheeeecccccccccC
Confidence 99999999999999999999999999999999999999999999999999999998654 5999999999999997653
Q ss_pred cCCCCCCCCCCCCChhhhccccCcccceeeeEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeCcchhhhhccCCCC
Q 001122 971 TDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKRHPY 1050 (1149)
Q Consensus 971 ~~~~~~~~~~~~n~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~~~~~~~~~~ 1050 (1149)
.+... ...+..++.++.+++.++++||||||+|||||+++||||||||+|||.|++||||+|+++|++++.. ....
T Consensus 581 g~~~~-~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~---~~~~ 656 (758)
T PLN02352 581 GEFVP-PYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTN---TNNP 656 (758)
T ss_pred Ccccc-ccCCCCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccCCC---cccc
Confidence 33211 1222344455677788889999999999999999999999999999999999999999999986532 2356
Q ss_pred chhHHHHHHHHHHHhCCCccccCCCcchhHHHHHhhhhhhhhhHhhhhhhccccc-ccccCcceeCCCCCccCC-CCCCC
Q 001122 1051 GQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRS-HLIKYPVEVDRKGKVRPI-PGYET 1128 (1149)
Q Consensus 1051 g~i~~lR~~Lw~EHlG~~~~~f~~p~s~~~~~~v~~~~~~nw~~~a~~~~~~~~g-hL~~~p~~~~~~g~~~~~-~g~~~ 1128 (1149)
++|++|||+||+||||+.++.|.+|+|+||++++|+++++||++|+++++++|+| ||++||+.|+.+|+|++| ||+++
T Consensus 657 ~~i~~~R~~L~~EHLG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~~~~~g~hl~~yp~~v~~~g~v~~l~~g~~~ 736 (758)
T PLN02352 657 RDIQAYRMSLWYEHTGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEVVDMEGVHLVNYPISVTKDGAVEDLADGDGN 736 (758)
T ss_pred hHHHHHHHHHHHHHhCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchhccCCCcccccCCeEecCCcceeecCCCCcC
Confidence 8999999999999999999999999999999999999999999999999999999 999999999999999999 69999
Q ss_pred CCCCCCccccccC-CCCcCCCC
Q 001122 1129 FPDVGGNIVGSFF-AIQENLTI 1149 (1149)
Q Consensus 1129 fpd~~~~i~g~~~-~~~~~~~~ 1149 (1149)
||||+|+|+|++. .||++|||
T Consensus 737 fpd~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 737 FPDTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred CCCCCCceeccccccCCccccC
Confidence 9999999999996 89999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-143 Score=1280.62 Aligned_cols=750 Identities=50% Similarity=0.816 Sum_probs=667.1
Q ss_pred CCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccc---c-------------c----------cCCCCCCCCcEEEEE
Q 001122 337 KGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMF---N-------------S----------QMNTKITSDPYVTIA 390 (1149)
Q Consensus 337 ~~~~~~~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~---~-------------k----------~~~~~~~sDPYV~V~ 390 (1149)
.....+.|+||+|+++|+++..+.+++.+..+.+..+ + + .+++..+.++|+++.
T Consensus 66 ~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Ylt~~ 145 (887)
T KOG1329|consen 66 SGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENYLTVV 145 (887)
T ss_pred CcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccchheee
Confidence 4555778999999999999999986654333211100 0 0 012234469999999
Q ss_pred ECCEEEeeeeeeeCC-CCCeeceEEEEEccCCCcEEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeeeecCCCCC
Q 001122 391 VAGAVVGRTFVISNS-EDPVWQQHFYVPVAHSAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 468 (1149)
Q Consensus 391 l~~~~~~rTkVi~nt-~NPvWNE~F~f~v~~~~~~L~~~V~D~D~~~-ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk 468 (1149)
+....+.+|.++.+. .+|.|.+.|++.+.+....++++|.+.+..+ ..++|.+.+++..+.+|..+++|+++++.+++
T Consensus 146 l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~ 225 (887)
T KOG1329|consen 146 LHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGK 225 (887)
T ss_pred echhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCc
Confidence 999999999999886 9999999999999999999999999999988 89999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEEeecccccccccCCCCCCCCCCCCCCCCCCccccceeEecccccCCCCCCCceeecCCCccchh-HHH
Q 001122 469 PCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHG-KCW 547 (1149)
Q Consensus 469 ~~~~~g~L~L~l~f~p~~~d~~~~~Gv~~~~~~~~vp~~~~p~~~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~-~~f 547 (1149)
+++++..+.+.++|++++.+..|..|+..++++.+++.++++++.||.|++|||+|..+++.|.+.+++|++|+++ .||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~~ 305 (887)
T KOG1329|consen 226 PHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKYW 305 (887)
T ss_pred cccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhHH
Confidence 9988889999999999999999999999999999999999999999999999999999999999999999976555 789
Q ss_pred HHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCcccccccccccccccccH
Q 001122 548 YDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDE 627 (1149)
Q Consensus 548 ~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~~ 627 (1149)
++|++||++||+.|||++||++|+++|+|+...+.+.||+++||+||++||+|+|||||++++... ..++.+
T Consensus 306 edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~--------i~S~~~ 377 (887)
T KOG1329|consen 306 EDVADAIENARREIYITGWWLSPELYLVRPPKGPNDWRLDELLKRKAEEGVRVLILVWKDVTSALG--------INSHYE 377 (887)
T ss_pred HHHHHHHHhhhhEEEEeccccCceEEEEccCCCCCceEHHHHHHHHHhCCcEEEEEEeccchhccc--------cCchhH
Confidence 999999999999999999999999999999876678999999999999999999999999987533 236788
Q ss_pred HHHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCCCCCCcccc
Q 001122 628 ETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRT 707 (1149)
Q Consensus 628 ~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~~~ 707 (1149)
+++.+++|++|+|++||+..++.. .++|+||||+||||++ +|||||+|||+|||||++|+|+|+
T Consensus 378 k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH~L~d~ 441 (887)
T KOG1329|consen 378 KTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEHPLFDT 441 (887)
T ss_pred HHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCcccccccc
Confidence 899999999999999998754321 3579999999999996 999999999999999999999999
Q ss_pred cccccCCCCCCCcccC----CCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccccCcchhhhhhhccCCC
Q 001122 708 LQTLHKDDYHNPTFTG----NTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPG 783 (1149)
Q Consensus 708 l~~~~~~Dy~np~~~~----~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~at~~~~~~~l~~~~~~ll~~~~~p~ 783 (1149)
++++|++||+|++|.+ ...++||||||||||+|.||+|+||++||+||||++...... +++.+..+.+++.
T Consensus 442 ~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~~-----~~~~~p~L~p~~~ 516 (887)
T KOG1329|consen 442 LQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKKP-----YDDSLPLLLPISD 516 (887)
T ss_pred ccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccCC-----CCccceeecChhh
Confidence 9999999999999998 678999999999999999999999999999999998753211 1222222222233
Q ss_pred ccCCCCCCCcccCCCCCceEEEEEeccCCcccccCCCChhhhhccccccCccccchHHHHHHHHHHHHhhccEEEEEEee
Q 001122 784 IIGISDAPSVRENDAESWHVQVIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQY 863 (1149)
Q Consensus 784 ~~~~~~~p~~~~~~~~~~~VQ~vlRS~~~~s~~~fP~~P~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ar~~IYIENQY 863 (1149)
+..++. ..+.+++.|++| ++||++.+++.+ |+.....++.|++...+|+||++||+++|++|||||||||||
T Consensus 517 ~~~~~~---~~~~~~e~~~~q-~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQf 588 (887)
T KOG1329|consen 517 ITGPSE---PNEEDPESWHVQ-VFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQF 588 (887)
T ss_pred hcCCCC---cccccccccccc-ceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeeee
Confidence 322211 134677889999 999999887654 666677788899888899999999999999999999999999
Q ss_pred eecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC--CC--CCCCchhHHHHHHHHHhHhhHHHHHH
Q 001122 864 FIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWP--EG--VPTGAATQRILFWQHKTMQMMYETIY 939 (1149)
Q Consensus 864 Fi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~P--eg--~p~~~s~~~il~~~~rTm~~~~~si~ 939 (1149)
|+++++.|. ...|.+.++|+++|++|++|++.|+||||||+|| || .+++++.|+|++||+|||+|||++|+
T Consensus 589 Fi~ss~~~~-----~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~ 663 (887)
T KOG1329|consen 589 FIGSSFNWD-----SVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIY 663 (887)
T ss_pred EEeeccCCC-----cccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHH
Confidence 999987776 4667788999999999999999999999999999 88 78999999999999999999999999
Q ss_pred HHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccceeeeEEEEEeCeEEEEcccCcc
Q 001122 940 KALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANIN 1019 (1149)
Q Consensus 940 ~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN 1019 (1149)
++|++.|++- .+|.+|++|+|+++++.. +++.+++|||||||+|||||+++||||||||
T Consensus 664 ~~Lka~g~d~-~~yi~f~~lr~~g~~e~~--------------------~~~~~~emIYVHsK~mIvDD~~vIIGSANIN 722 (887)
T KOG1329|consen 664 KALKAVGLDP-ADYIDFLGLRCLGNREEQ--------------------AQRLRREMIYVHSKLMIVDDEYVIIGSANIN 722 (887)
T ss_pred HHHHHhcCCc-cccceeeeeeeeeccccc--------------------cccceEEEEEEeeeeEEecCCEEEEeecccc
Confidence 9999999986 467889999999988641 2356789999999999999999999999999
Q ss_pred cccCCCCCCcceEEEEeCcchhhhhccCCCCchhHHHHHHHHHHHhCCCccccCCCcchhHHHHHhhhhhhhhhHhhhhh
Q 001122 1020 QRSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADD 1099 (1149)
Q Consensus 1020 ~RSm~G~~DsEiav~i~dp~~~~~~~~~~~~g~i~~lR~~Lw~EHlG~~~~~f~~p~s~~~~~~v~~~~~~nw~~~a~~~ 1099 (1149)
+|||.|+|||||||+++|+.+++..+...++|++++|||+||+||||+.++.|.+|++++|++.++.+.+++|..+|+++
T Consensus 723 qRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d~~~~~W~~~a~~n 802 (887)
T KOG1329|consen 723 QRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRDLFEDLWQRYAARN 802 (887)
T ss_pred hhhccCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCcceeCCCCCccCCCCCCCCCCCCCcccccc-CCCCcCCCC
Q 001122 1100 QSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSF-FAIQENLTI 1149 (1149)
Q Consensus 1100 ~~~~~ghL~~~p~~~~~~g~~~~~~g~~~fpd~~~~i~g~~-~~~~~~~~~ 1149 (1149)
.+.+.|||+.||+++..+|++.+++|.++|||+.|+|.|.+ .++|++||+
T Consensus 803 ~~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 803 TTIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred hhhhhceEEEcccccccCcceeecCCccccccccccccccccccCCccccc
Confidence 99999999999999999999999999999999999999996 699999986
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=3.9e-93 Score=867.73 Aligned_cols=532 Identities=31% Similarity=0.508 Sum_probs=408.6
Q ss_pred CCCCCCcc----ccceeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCC
Q 001122 505 PGTYFPLR----KGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASP 580 (1149)
Q Consensus 505 p~~~~p~~----~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~ 580 (1149)
-.+|+|.+ .||+++||.||+ ++|++|++||++||++|+|++|||+|++||+|+...
T Consensus 320 F~SFAP~r~~~~~gN~vk~LvDG~--------------------dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D 379 (1068)
T PLN02866 320 FGSFAPPRGLTEDGSQAQWFIDGH--------------------AAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHD 379 (1068)
T ss_pred CCCcCCCccccCCCCEEEEEeCHH--------------------HHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCC
Confidence 36899999 699999999997 789999999999999999999999999999996433
Q ss_pred chHHHHHHHHHHHhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHh--hcCCcEEEEccCccccccccccccc
Q 001122 581 ALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVF--KHSSVKVLLCPRIAGKRHSWAKQKE 658 (1149)
Q Consensus 581 ~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~~~t~~~l--~~~gV~v~l~p~~~~~~~~~~~~~~ 658 (1149)
..+.+|+++|++||++||+||||+||+++.....+ +..+++.+ .++||+|..+|... . .
T Consensus 380 ~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~~----------S~~~k~~L~~lh~gI~V~r~P~~~----~-----~ 440 (1068)
T PLN02866 380 HESSRLDSLLEAKAKQGVQIYILLYKEVALALKIN----------SVYSKRRLLGIHENVKVLRYPDHF----S-----S 440 (1068)
T ss_pred chHHHHHHHHHHHHHCCCEEEEEEECccccccccC----------chhhHHHHHHhCCCeEEEecCccc----c-----c
Confidence 57899999999999999999999999976421111 11222222 47899998776421 0 1
Q ss_pred ccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCCCCCCcccc-cccccCCCCCCCcccC------------CC
Q 001122 659 VGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRT-LQTLHKDDYHNPTFTG------------NT 725 (1149)
Q Consensus 659 ~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~~~-l~~~~~~Dy~np~~~~------------~~ 725 (1149)
..++||||||+||||++ +|||||+|||.|||||++|++.|. ...|+++||.|++... ++
T Consensus 441 ~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR 512 (1068)
T PLN02866 441 GVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDR 512 (1068)
T ss_pred CcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCccccccccccccccccccccccccc
Confidence 23679999999999996 999999999999999999999884 4568899999986532 12
Q ss_pred CCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccc----c-C--------cc--------------h------
Q 001122 726 TGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKK----L-K--------SG--------------D------ 772 (1149)
Q Consensus 726 ~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~at~~~~~~~----l-~--------~~--------------~------ 772 (1149)
...+||||||+||+|+||||+||+++|++|||.+++.....+ + . .+ .
T Consensus 513 ~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 592 (1068)
T PLN02866 513 RKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQKGI 592 (1068)
T ss_pred ccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccccccccccccccccc
Confidence 456889999999999999999999999999998875421100 0 0 00 0
Q ss_pred ---hhh---hhhccCCCccCCC-------------------------------------CCCC-----------------
Q 001122 773 ---DAL---LRIERIPGIIGIS-------------------------------------DAPS----------------- 792 (1149)
Q Consensus 773 ---~~l---l~~~~~p~~~~~~-------------------------------------~~p~----------------- 792 (1149)
+.. .....+|.+++.. ..+.
T Consensus 593 ~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 672 (1068)
T PLN02866 593 ARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVKMS 672 (1068)
T ss_pred cccccccccccccccccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0000011000000 0000
Q ss_pred -----------------------------cccCCCCCceEEEEEeccCCcccccCCCChhhhhccccccCccccchHHHH
Q 001122 793 -----------------------------VRENDAESWHVQVIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIH 843 (1149)
Q Consensus 793 -----------------------------~~~~~~~~~~VQ~vlRS~~~~s~~~fP~~P~~~~~~~l~~g~~~~~e~sI~ 843 (1149)
......+++.|| |+||++.||+.. + .+|+||+
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~Q-ivRS~~~WS~G~-~-----------------~~E~SI~ 733 (1068)
T PLN02866 673 SAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQ-VIRSVSQWSAGT-S-----------------QVEESIH 733 (1068)
T ss_pred ccccccccccccccccccccccccccccccccCCCCeEEEE-EEeecccccCCC-C-----------------chHHHHH
Confidence 000112457899 999999998521 0 2588999
Q ss_pred HHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--C-CC--CCc
Q 001122 844 TAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE--G-VP--TGA 918 (1149)
Q Consensus 844 ~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Pe--g-~p--~~~ 918 (1149)
+||+++|++|+||||||||||+++.. .+..+.|+|+.+|+++|++|+++++.|+|+||||++|+ | .+ .+.
T Consensus 734 ~AYi~~I~~A~hfIYIENQFFis~~~-----~~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~~ 808 (1068)
T PLN02866 734 AAYCSLIEKAEHFIYIENQFFISGLS-----GDDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAA 808 (1068)
T ss_pred HHHHHHHHhcccEEEEeccccccccc-----ccccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccch
Confidence 99999999999999999999998752 24567999999999999999999999999999999997 2 22 346
Q ss_pred hhHHHHHHHHHhHhhHHHHHHHHHHHc-CCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccc
Q 001122 919 ATQRILFWQHKTMQMMYETIYKALVEV-GLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMI 997 (1149)
Q Consensus 919 s~~~il~~~~rTm~~~~~si~~~L~~~-Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~i 997 (1149)
+.+.|++||++||++|+.+|+++|+++ |. +|.+|++|||||+++.+.... + -.+++|
T Consensus 809 svr~Im~~Q~~tI~rG~~Si~~~L~~~~g~----~p~dYisf~~LRn~~~l~~~~------------~------~vteqI 866 (1068)
T PLN02866 809 SVRAIMHWQYRTICRGKNSILHNLYDLLGP----KTHDYISFYGLRAYGRLFEGG------------P------LATSQI 866 (1068)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhCC----CHHHeEeeecccccccccCCC------------c------ccceee
Confidence 799999999999999999999999985 54 477999999999987652110 0 123579
Q ss_pred eeeeEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeCcchhhhhccC---CCCchhHHHHHHHHHHHhCCCccc---
Q 001122 998 YVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKR---HPYGQIYGYRMSLWAEHLGYIEDC--- 1071 (1149)
Q Consensus 998 YVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~~~~~~~---~~~g~i~~lR~~Lw~EHlG~~~~~--- 1071 (1149)
|||||+|||||++++|||||||+|||.|++||||+|+++|++.+...+.+ .+++++++||++||+||||+..+.
T Consensus 867 YVHsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~ 946 (1068)
T PLN02866 867 YVHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDK 946 (1068)
T ss_pred EEEeeEEEEcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhc
Confidence 99999999999999999999999999999999999999999876543332 355789999999999999997643
Q ss_pred cCCCcchhHHH-HHhhhhhhhhh---------------------Hhh---------------------------------
Q 001122 1072 FGQPETLECVR-KVRSVGENNWQ---------------------QFA--------------------------------- 1096 (1149)
Q Consensus 1072 f~~p~s~~~~~-~v~~~~~~nw~---------------------~~a--------------------------------- 1096 (1149)
+.+|-+-+.++ -|+..|..|-+ ++.
T Consensus 947 ~~DP~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~ 1026 (1068)
T PLN02866 947 IIDPVCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSD 1026 (1068)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhh
Confidence 45676644553 35666654431 111
Q ss_pred -hhhhcccccccccCcceeCCCCCccCCCCCCCC
Q 001122 1097 -ADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETF 1129 (1149)
Q Consensus 1097 -~~~~~~~~ghL~~~p~~~~~~g~~~~~~g~~~f 1129 (1149)
.+++..++||||.||++|..++.++|.-+..+|
T Consensus 1027 ~~~~l~~I~G~lV~fPL~Fl~~E~L~p~~~~~e~ 1060 (1068)
T PLN02866 1027 PMERLKSVRGHLVSFPLDFMCQEDLRPVFNESEY 1060 (1068)
T ss_pred HHHHHhhceEEEEechhhhhhhccCCCCcCccce
Confidence 245789999999999999999999887775554
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=2e-47 Score=458.05 Aligned_cols=335 Identities=26% Similarity=0.352 Sum_probs=254.4
Q ss_pred CCCCccccceeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHH
Q 001122 507 TYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTL 586 (1149)
Q Consensus 507 ~~~p~~~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L 586 (1149)
+.+|...||+|++|.||+ ++|++++++|++||++|+|+.| +++++. .+..+
T Consensus 132 ~~~p~~~~n~~~ll~~g~--------------------~~~~~l~~~I~~Ak~~I~i~~y-------i~~~d~--~g~~i 182 (509)
T PRK12452 132 GGGPAADRTTTKLLTNGD--------------------QTFSEILQAIEQAKHHIHIQYY-------IYKSDE--IGTKV 182 (509)
T ss_pred cCCcccCCCEEEEeCCHH--------------------HHHHHHHHHHHHhCCEEEEEEE-------EEeCCc--HHHHH
Confidence 457899999999999997 7899999999999999999998 667664 78999
Q ss_pred HHHHHHHhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCccccccccccccccccccccc
Q 001122 587 GELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHH 666 (1149)
Q Consensus 587 ~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HH 666 (1149)
.++|++||+|||+||||+ |+.|+... .....+.++++||+|..+.+... +++ ....++|||
T Consensus 183 ~~aL~~aa~rGV~VRiL~-D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~---~~~---~~~~n~RnH 243 (509)
T PRK12452 183 RDALIKKAKDGVIVRFLY-DGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFS---AWL---LETVNYRNH 243 (509)
T ss_pred HHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHhCCeEEEEecCccc---ccc---cccccCCCC
Confidence 999999999999999995 99887421 12456678899999987754321 111 124678999
Q ss_pred ceeEEecCCCCCCCccEEEEEccccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHH
Q 001122 667 QKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAY 746 (1149)
Q Consensus 667 QKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~ 746 (1149)
||++|||++ +||+||+|+++++.... ....+|||+|++|+||+|.
T Consensus 244 RKi~VIDg~--------ia~~GG~Ni~d~y~~~~---------------------------~~~~~WrD~~~~i~Gp~V~ 288 (509)
T PRK12452 244 RKIVIVDGE--------IGFTGGLNVGDEYLGRS---------------------------KKFPVWRDSHLKVEGKALY 288 (509)
T ss_pred CeEEEEcCC--------EEEeCCcccchhhcCCC---------------------------CCCCCceEEEEEEECHHHH
Confidence 999999996 99999999999654210 1346899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCccccCcchhhhhhhccCCCccCCCCCCCcccCCCCCceEEEEEeccCCcccccCCCChhhhh
Q 001122 747 DVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQVIFRSIDSTSVRGFPKDPKEAT 826 (1149)
Q Consensus 747 Dl~~~F~qrWn~at~~~~~~~l~~~~~~ll~~~~~p~~~~~~~~p~~~~~~~~~~~VQ~vlRS~~~~s~~~fP~~P~~~~ 826 (1149)
++...|.++|+.+++..... .+.. .......| .. ....+...+| ++.+ +|..
T Consensus 289 ~l~~~F~~dW~~~~~~~~~~---~~~~-~~~~~~~~---------~~-~~~~~~~~~q-~~~s-----------gp~~-- 340 (509)
T PRK12452 289 KLQAIFLEDWLYASSGLNTY---SWDP-FMNRQYFP---------GK-EISNAEGAVQ-IVAS-----------GPSS-- 340 (509)
T ss_pred HHHHHHHHHHHHhhCccccc---cccc-ccchhcCC---------Cc-cccCCCeEEE-EEeC-----------CCCc--
Confidence 99999999999876431000 0000 00000001 00 0112334678 5544 1211
Q ss_pred ccccccCccccchHHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEE
Q 001122 827 SKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIV 906 (1149)
Q Consensus 827 ~~~l~~g~~~~~e~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IV 906 (1149)
.+.+|+++|+++|++||++|||++|||+++. ++..+|..| +.+||+|+||
T Consensus 341 -----------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~-----------------~l~~aL~~A--a~rGV~Vrii 390 (509)
T PRK12452 341 -----------DDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ-----------------ETLTLLRLS--AISGIDVRIL 390 (509)
T ss_pred -----------hhHHHHHHHHHHHHHhhhEEEEECCccCCCH-----------------HHHHHHHHH--HHcCCEEEEE
Confidence 1458999999999999999999999999864 455555544 4699999999
Q ss_pred ecCCCCCCCCCchhHHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChh
Q 001122 907 IPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPE 986 (1149)
Q Consensus 907 lP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~ 986 (1149)
+|..+ ++.+++|+.+ ++++.|+++|++++. |
T Consensus 391 ~p~~~--------D~~~~~~a~~-------~~~~~L~~aGv~I~~----y------------------------------ 421 (509)
T PRK12452 391 YPGKS--------DSIISDQASQ-------SYFTPLLKAGASIYS----Y------------------------------ 421 (509)
T ss_pred cCCCC--------ChHHHHHHHH-------HHHHHHHHcCCEEEE----e------------------------------
Confidence 99753 5666666554 578999999999863 1
Q ss_pred hhccccCcccceeeeEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeCcchh
Q 001122 987 ALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 987 ~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
...++|+|+|||||++++|||+|||.||+. .|.|+++.++|++.+
T Consensus 422 --------~~~~lHaK~~ivD~~~a~vGS~Nld~RS~~--~n~E~~~~i~~~~~~ 466 (509)
T PRK12452 422 --------KDGFMHAKIVLVDDKIATIGTANMDVRSFE--LNYEIISVLYESETV 466 (509)
T ss_pred --------cCCCeeeeEEEECCCEEEEeCcccCHhHhh--hhhhccEEEECHHHH
Confidence 024899999999999999999999999998 899999999998753
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=2.9e-46 Score=447.02 Aligned_cols=331 Identities=24% Similarity=0.388 Sum_probs=252.7
Q ss_pred CCCCccccceeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHH
Q 001122 507 TYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTL 586 (1149)
Q Consensus 507 ~~~p~~~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L 586 (1149)
+.+|...||+|++|.||+ ++|++|+++|++||++|+|+.| +++++. .+.++
T Consensus 108 ~~~~~~~~n~v~ll~~g~--------------------~~~~~l~~~I~~Ak~~I~l~~y-------i~~~d~--~g~~i 158 (483)
T PRK01642 108 QGIPGLKGNQLRLLTNGD--------------------ETFQAIIRDIELARHYILMEFY-------IWRPDG--LGDQV 158 (483)
T ss_pred cCCCccCCCEEEEEcCHH--------------------HHHHHHHHHHHHhhcEEEEEEE-------EEccCC--cHHHH
Confidence 457899999999999997 7899999999999999999998 566664 78999
Q ss_pred HHHHHHHhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEc-cCcccccccccccccccccccc
Q 001122 587 GELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLC-PRIAGKRHSWAKQKEVGTIYTH 665 (1149)
Q Consensus 587 ~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~~~t~~~l~~~gV~v~l~-p~~~~~~~~~~~~~~~~~~~~H 665 (1149)
.++|++||+|||+||||+ |+.|+.... .....+.++..||+|..+ |.... ++. ....++|+
T Consensus 159 ~~aL~~aa~rGV~VriL~-D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~p~~~~---~~~---~~~~n~Rn 220 (483)
T PRK01642 159 AEALIAAAKRGVRVRLLY-DSIGSFAFF-----------RSPYPEELRNAGVEVVEFLKVNLG---RVF---RRRLDLRN 220 (483)
T ss_pred HHHHHHHHHCCCEEEEEE-ECCCCCCCC-----------cHHHHHHHHHCCCEEEEecCCCcc---ccc---cccccccc
Confidence 999999999999999995 998874321 122556688899999887 43111 111 12457899
Q ss_pred cceeEEecCCCCCCCccEEEEEccccCCC-CCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHH
Q 001122 666 HQKTVIVDADAGYNRRKIIAFVGGLDLCD-GRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPA 744 (1149)
Q Consensus 666 HQKiVVVD~~~~~~~r~~vAFVGGiDL~d-gRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPa 744 (1149)
|+|++|||++ +||+||+|+++ +|.... ...++|||+|++|+||+
T Consensus 221 HrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~~---------------------------~~~~~w~D~~~~i~Gp~ 265 (483)
T PRK01642 221 HRKIVVIDGY--------IAYTGSMNVVDPEYFKQD---------------------------PGVGQWRDTHVRIEGPV 265 (483)
T ss_pred CceEEEEcCC--------EEEeCCcccCCHHHhCCC---------------------------CCCCCcEEEEEEEEcHH
Confidence 9999999996 99999999999 654210 12468999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccCcchhhhhhhccCCCccCCCCCCCcccCCCCCceEEEEEeccCCcccccCCCChhh
Q 001122 745 AYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQVIFRSIDSTSVRGFPKDPKE 824 (1149)
Q Consensus 745 a~Dl~~~F~qrWn~at~~~~~~~l~~~~~~ll~~~~~p~~~~~~~~p~~~~~~~~~~~VQ~vlRS~~~~s~~~fP~~P~~ 824 (1149)
|.+++..|.++|+.+++..... ..+... ..+ ....+...+| ++.+ .|..
T Consensus 266 v~~l~~~F~~dW~~~~~~~~~~-------------~~~~~~---~~~---~~~~~~~~~q-i~~s-----------gP~~ 314 (483)
T PRK01642 266 VTALQLIFAEDWEWETGERILP-------------PPPDVL---IMP---FEEASGHTVQ-VIAS-----------GPGD 314 (483)
T ss_pred HHHHHHHHHHHHHHHhCcccCC-------------CCcccc---cCC---ccCCCCceEE-EEeC-----------CCCC
Confidence 9999999999999876531000 000000 000 0112234678 5543 2221
Q ss_pred hhccccccCccccchHHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEE
Q 001122 825 ATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAY 904 (1149)
Q Consensus 825 ~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~ 904 (1149)
.+..|+++|+++|.+||++|||+++||+++. ++..+|..| +.+||+|+
T Consensus 315 -------------~~~~~~~~~~~~I~~A~~~I~I~tpYfip~~-----------------~i~~aL~~A--a~rGV~Vr 362 (483)
T PRK01642 315 -------------PEETIHQFLLTAIYSARERLWITTPYFVPDE-----------------DLLAALKTA--ALRGVDVR 362 (483)
T ss_pred -------------hhhHHHHHHHHHHHHhccEEEEEcCCcCCCH-----------------HHHHHHHHH--HHcCCEEE
Confidence 1357999999999999999999999999864 455566554 46999999
Q ss_pred EEecCCCCCCCCCchhHHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCC
Q 001122 905 IVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNT 984 (1149)
Q Consensus 905 IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~ 984 (1149)
||+|..+ ++.+++|+.+ +++++|.++|++++. |
T Consensus 363 il~p~~~--------d~~~~~~~~~-------~~~~~L~~~Gv~I~~----y---------------------------- 395 (483)
T PRK01642 363 IIIPSKN--------DSLLVFWASR-------AFFTELLEAGVKIYR----Y---------------------------- 395 (483)
T ss_pred EEeCCCC--------CcHHHHHHHH-------HHHHHHHHcCCEEEE----e----------------------------
Confidence 9999864 4566666654 578899999998863 1
Q ss_pred hhhhccccCcccceeeeEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeCcchh
Q 001122 985 PEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 985 ~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
...++|||+|||||++++|||+|||.||+. .|.|+++.++|++++
T Consensus 396 ----------~~~~~HaK~~ivD~~~~~vGS~N~d~rS~~--~N~E~~~~i~d~~~~ 440 (483)
T PRK01642 396 ----------EGGLLHTKSVLVDDELALVGTVNLDMRSFW--LNFEITLVIDDTGFA 440 (483)
T ss_pred ----------CCCceEeEEEEECCCEEEeeCCcCCHhHHh--hhhcceEEEECHHHH
Confidence 023799999999999999999999999998 899999999998753
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=2.4e-45 Score=429.02 Aligned_cols=326 Identities=21% Similarity=0.324 Sum_probs=244.2
Q ss_pred CccccceeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHH
Q 001122 510 PLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGEL 589 (1149)
Q Consensus 510 p~~~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dl 589 (1149)
+.+.||+|+||.||+ ++|.+++++|++||++|+|++| ++.++. .+..|.++
T Consensus 3 ~~~~gN~v~ll~~G~--------------------e~~~~l~~~I~~Ak~~I~i~~y-------i~~~d~--~g~~l~~a 53 (411)
T PRK11263 3 SWREGNRIQLLENGE--------------------QYYPRVFEAIAAAQEEILLETF-------ILFEDK--VGKQLHAA 53 (411)
T ss_pred cccCCCeEEEEeCHH--------------------HHHHHHHHHHHHhCCEEEEEEE-------EEecCc--hHHHHHHH
Confidence 678899999999997 7899999999999999999998 445543 68999999
Q ss_pred HHHHhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCccccccccccccccccccccccee
Q 001122 590 LRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKT 669 (1149)
Q Consensus 590 L~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKi 669 (1149)
|++||+|||+||||+ |..++... .....+.|.++||+|..+.+.. .++. .....+.++|+|+
T Consensus 54 L~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~----~~~~-~~~~~~~R~HrKi 115 (411)
T PRK11263 54 LLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRP----RLLG-MRTNLFRRMHRKI 115 (411)
T ss_pred HHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCcc----cccc-cccccccCCcceE
Confidence 999999999999996 88776421 2345667888999998764421 1110 1122346999999
Q ss_pred EEecCCCCCCCccEEEEEccccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHH
Q 001122 670 VIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVL 749 (1149)
Q Consensus 670 VVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~ 749 (1149)
+|||++ +|||||+|++++++.. .....|+|++++|+||+|.++.
T Consensus 116 iVIDg~--------~a~vGg~N~~~~~~~~----------------------------~g~~~w~D~~v~i~Gp~V~~l~ 159 (411)
T PRK11263 116 VVIDGR--------IAFVGGINYSADHLSD----------------------------YGPEAKQDYAVEVEGPVVADIH 159 (411)
T ss_pred EEEcCC--------EEEEcCeEchHhhccc----------------------------cCCCCceEEEEEEECHHHHHHH
Confidence 999996 9999999999865421 1135799999999999999999
Q ss_pred HHHHHHHHhhcCCCCccccCcchhhhhhhccCCCccCCCCCCCcccCCCCCceEEEEEeccCCcccccCCCChhhhhccc
Q 001122 750 TNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQVIFRSIDSTSVRGFPKDPKEATSKN 829 (1149)
Q Consensus 750 ~~F~qrWn~at~~~~~~~l~~~~~~ll~~~~~p~~~~~~~~p~~~~~~~~~~~VQ~vlRS~~~~s~~~fP~~P~~~~~~~ 829 (1149)
..|.+.|....... . .. .+.+. .+ .....+...+|++.++ |..
T Consensus 160 ~~f~~~w~~~~~~~---~------~~---~~~~~------~~--~~~~~g~~~~~~v~~~------------p~~----- 202 (411)
T PRK11263 160 QFELEALPGQSAAR---R------WW---RRHHR------AE--ENRQPGEAQALLVWRD------------NEE----- 202 (411)
T ss_pred HHHHHHHhhcccch---h------hh---ccccc------Cc--ccCCCCCeEEEEEECC------------Ccc-----
Confidence 99999997532110 0 00 00000 00 0011233456633322 110
Q ss_pred cccCccccchHHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecC
Q 001122 830 LVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM 909 (1149)
Q Consensus 830 l~~g~~~~~e~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~ 909 (1149)
....|+.+|+++|++||+.|||+|+||+++. .+..+|..| +++||+|+||+|.
T Consensus 203 --------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~-----------------~l~~aL~~A--a~RGV~V~ii~~~ 255 (411)
T PRK11263 203 --------HRDDIERHYLKALRQARREVIIANAYFFPGY-----------------RLLRALRNA--ARRGVRVRLILQG 255 (411)
T ss_pred --------hHHHHHHHHHHHHHHhceEEEEEecCcCCCH-----------------HHHHHHHHH--HHCCCEEEEEeCC
Confidence 1347999999999999999999999999863 455556554 4699999999997
Q ss_pred CCCCCCCCchhHHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhc
Q 001122 910 WPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALS 989 (1149)
Q Consensus 910 ~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~ 989 (1149)
.+ +++++.|+.+ .+++.|+++|++++. | +
T Consensus 256 ~~--------d~~~~~~a~~-------~~~~~Ll~~Gv~I~~----y----~---------------------------- 284 (411)
T PRK11263 256 EP--------DMPIVRVGAR-------LLYNYLLKGGVQIYE----Y----C---------------------------- 284 (411)
T ss_pred CC--------CcHHHHHHHH-------HHHHHHHHCCCEEEE----e----c----------------------------
Confidence 53 5667766654 478899999999863 1 0
Q ss_pred cccCcccceeeeEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeCcchh
Q 001122 990 RKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 990 ~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
..++|+|+|||||++++|||+|||.|||. .|.|+++.|+|++++
T Consensus 285 ------~~~lHaK~~viD~~~~~vGS~Nld~rS~~--lN~E~~~~i~d~~~a 328 (411)
T PRK11263 285 ------RRPLHGKVALMDDHWATVGSSNLDPLSLS--LNLEANLIIRDRAFN 328 (411)
T ss_pred ------CCCceeEEEEECCCEEEEeCCcCCHHHhh--hhhhcCEEEeCHHHH
Confidence 13799999999999999999999999998 899999999999864
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=3.8e-35 Score=347.49 Aligned_cols=337 Identities=27% Similarity=0.397 Sum_probs=241.7
Q ss_pred cccceeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHH
Q 001122 512 RKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLR 591 (1149)
Q Consensus 512 ~~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~ 591 (1149)
..++.++++.+|. +.|.+++++|++|+++|+|+.| ++.++. .+..+.++|.
T Consensus 57 ~~~~~~~~l~~~~--------------------~~~~~~~~~i~~a~~~I~~~~~-------i~~~d~--~~~~i~~~l~ 107 (438)
T COG1502 57 ISGNGVDLLKDGA--------------------DAFAALIELIEAAKKSIYLQYY-------IWQDDE--LGREILDALI 107 (438)
T ss_pred CCCCceEEecCHH--------------------HHHHHHHHHHHHHhhEEEEEEE-------EEeCCh--hHHHHHHHHH
Confidence 6789999999986 7899999999999999999887 666664 7899999999
Q ss_pred HHhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCc-EEEEccCcccccccccccccccccccccceeE
Q 001122 592 SKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSV-KVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTV 670 (1149)
Q Consensus 592 ~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~~~t~~~l~~~gV-~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiV 670 (1149)
++|++||+||+|+ |+.++...+ .......++++++ ++..+.+..... ......+.++|+|++
T Consensus 108 ~~a~~gv~vr~l~-D~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~r~H~K~~ 170 (438)
T COG1502 108 EAAKRGVEVRLLL-DDIGSTRGL-----------LKSLLALLKRAGIEEVRLFNPASPRP-----LRFRRLNRRLHRKIV 170 (438)
T ss_pred HHHHcCCEEEEEE-ecCCCcccc-----------cHHHHHHHhcCCceEEEecCCccccc-----chhhhhhccccceEE
Confidence 9999999999996 887752111 1235667788898 666654332111 012235689999999
Q ss_pred EecCCCCCCCccEEEEEccccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHH
Q 001122 671 IVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLT 750 (1149)
Q Consensus 671 VVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~ 750 (1149)
|||+. ++|+||.|+.+.++... ...++|+|++++++||+|.++..
T Consensus 171 viD~~--------i~~vGg~N~~d~y~~~~---------------------------~~~~~~~D~~~~~~g~~v~~l~~ 215 (438)
T COG1502 171 VIDGK--------VAFVGGANIGDEYFHKD---------------------------KGLGYWRDLHVRITGPAVADLAR 215 (438)
T ss_pred EEcCC--------EEEecCcccchhhhccC---------------------------cCcccceeeeEEEECHHHHHHHH
Confidence 99996 99999999999876421 02358999999999999999999
Q ss_pred HHHHHHHhhcCCCCccccCcchhhhhhhccCCCccCCCCCCCcccCCCCCceEEEEEeccCCcccccCCCChhhhhcccc
Q 001122 751 NFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQVIFRSIDSTSVRGFPKDPKEATSKNL 830 (1149)
Q Consensus 751 ~F~qrWn~at~~~~~~~l~~~~~~ll~~~~~p~~~~~~~~p~~~~~~~~~~~VQ~vlRS~~~~s~~~fP~~P~~~~~~~l 830 (1149)
+|.++|+....... .+. ... .+... . .. .........+| ++.+. |....
T Consensus 216 ~f~~~w~~~~~~~~--~~~---~~~-----~~~~~---~-~~-~~~~~~~~~~~-~~~~~-----------P~~~~---- 264 (438)
T COG1502 216 LFIQDWNLESGSSK--PLL---ALV-----RPPLQ---S-LS-LLPVGRGSTVQ-VLSSG-----------PDKGL---- 264 (438)
T ss_pred HHHHHhhhccCcCc--ccc---ccc-----ccccc---c-cc-ccccccCcceE-EEecC-----------Ccccc----
Confidence 99999998743210 000 000 00000 0 00 00011122256 44432 21100
Q ss_pred ccCccccchHHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 001122 831 VCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMW 910 (1149)
Q Consensus 831 ~~g~~~~~e~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~ 910 (1149)
+.. ...+...|+.+|.+|+++|+|+++||+++. ++..+|..+ +.+|++|+|++|..
T Consensus 265 --~~~---~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~-----------------~~~~al~~a--~~~Gv~V~ii~~~~ 320 (438)
T COG1502 265 --GSE---LIELNRLLLKAINSARESILIATPYFVPDR-----------------ELLAALKAA--ARRGVDVRIIIPSL 320 (438)
T ss_pred --chh---hhhHHHHHHHHHHhhceEEEEEcCCcCCCH-----------------HHHHHHHHH--HhcCCEEEEEeCCC
Confidence 000 112558999999999999999999999874 455555554 47899999999953
Q ss_pred CCCCCCCchhHHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhcc
Q 001122 911 PEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSR 990 (1149)
Q Consensus 911 Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~ 990 (1149)
+..+..+++|..+ ..+..|.+.|++++. | .
T Consensus 321 ------~~~d~~~~~~~~~-------~~~~~l~~~gv~i~~----~---------------~------------------ 350 (438)
T COG1502 321 ------GANDSAIVHAAYR-------AYLKELLEAGVKVYE----Y---------------P------------------ 350 (438)
T ss_pred ------CCCChHHHHHHHH-------HHHHHHHHhCCEEEE----e---------------c------------------
Confidence 1345666665544 578999999998753 1 0
Q ss_pred ccCccc-ceeeeEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeCcchh
Q 001122 991 KSGRFM-IYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 991 ~~r~~~-iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
. .++|+|+|||||++++|||+|||.||+. .|+|++++|+|+++.
T Consensus 351 -----~g~~lH~K~~iiD~~~~~vGS~N~~~rS~~--lN~E~~~~i~d~~~~ 395 (438)
T COG1502 351 -----GGAFLHSKVMIIDDRTVLVGSANLDPRSLR--LNFEVGLVIEDPELA 395 (438)
T ss_pred -----CCCcceeeEEEEcCCEEEEeCCcCCHhHHH--HhhhheeEEeCHHHH
Confidence 1 3899999999999999999999999999 899999999998643
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=7.7e-33 Score=326.24 Aligned_cols=348 Identities=16% Similarity=0.159 Sum_probs=222.0
Q ss_pred ccceeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHH
Q 001122 513 KGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRS 592 (1149)
Q Consensus 513 ~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~ 592 (1149)
.++.|+++.+|. ++|++|+++|++||++|+|++| ++.+|. .|..|.++|.+
T Consensus 23 ~~~~v~~l~~~~--------------------~f~~~Ll~~I~~Ak~~I~l~~y-------~~~~D~--~g~~il~AL~~ 73 (451)
T PRK09428 23 SPDDVETLYSPA--------------------DFRETLLEKIASAKKRIYIVAL-------YLEDDE--AGREILDALYQ 73 (451)
T ss_pred CcccEEEEcCHH--------------------HHHHHHHHHHHhcCCeEEEEEE-------EecCCc--hHHHHHHHHHH
Confidence 568899999986 7899999999999999999999 455554 78999999998
Q ss_pred Hh--hcCCcEEEEEecCCC-cccccccccccccc-cccHHHHHHhhc--CCcEEEEcc-Ccccccccccccccccccccc
Q 001122 593 KS--QEGVRVLLLVWDDPT-SRSILGYKMDGVMQ-THDEETRRVFKH--SSVKVLLCP-RIAGKRHSWAKQKEVGTIYTH 665 (1149)
Q Consensus 593 kA--~rGVkVrILvwD~~g-s~~~~g~k~~g~~~-t~~~~t~~~l~~--~gV~v~l~p-~~~~~~~~~~~~~~~~~~~~H 665 (1149)
|+ ++||+|+||+ |... .+...| ... .........++. +|++|.++. +.. ....+.++
T Consensus 74 a~~~~~gv~VrvLv-D~~Ra~Rg~iG-----~~~~~~~~~~~~~l~~~~~gv~v~~f~~p~~----------~~e~~gr~ 137 (451)
T PRK09428 74 AKQQNPELDIKVLV-DWHRAQRGLIG-----AAASNTNADWYCEMAQEYPGVDIPVYGVPVN----------TREALGVL 137 (451)
T ss_pred HHhcCCCcEEEEEE-Ecccccccccc-----cCCCCcCHHHHHHHHHhCCCceEEEcCCccc----------cchhhhhc
Confidence 74 5899999997 8642 111111 110 011233444544 368988772 211 01245689
Q ss_pred cceeEEecCCCCCCCccEEEEEccccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHH
Q 001122 666 HQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAA 745 (1149)
Q Consensus 666 HQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa 745 (1149)
|+|++|||++ |+|+| .||.+.|+... . ....|..++|+||++
T Consensus 138 HrKi~IiD~~--------v~ysG-aNi~d~Yl~~~---------------------------~--~~r~Dry~~i~g~~l 179 (451)
T PRK09428 138 HLKGFIIDDT--------VLYSG-ASLNNVYLHQH---------------------------D--KYRYDRYHLIRNAEL 179 (451)
T ss_pred eeeEEEECCC--------EEEec-ccccHHHhcCC---------------------------c--ccCcceEEEEeCchH
Confidence 9999999996 99987 79999765310 0 112377888999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccccC--------cchhhhhhh-ccCCCccCCCCCCCcccCCCCCceEEEEEeccCCcccc
Q 001122 746 YDVLTNFEERWRKASKPHGIKKLK--------SGDDALLRI-ERIPGIIGISDAPSVRENDAESWHVQVIFRSIDSTSVR 816 (1149)
Q Consensus 746 ~Dl~~~F~qrWn~at~~~~~~~l~--------~~~~~ll~~-~~~p~~~~~~~~p~~~~~~~~~~~VQ~vlRS~~~~s~~ 816 (1149)
.++...|++.|..++... ..+. ........+ ..... ..... ... .+...++ +...+.
T Consensus 180 a~~~~~fi~~~~~~~~~v--~~l~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~--~~~-~~~~~~~-v~p~~g----- 245 (451)
T PRK09428 180 ADSMVNFIQQNLLNSPAV--NRLDQPNRPKTKEIKNDIRQFRQRLRD---AAYQF--QGQ-ANNDELS-VTPLVG----- 245 (451)
T ss_pred HHHHHHHHHHHhhccCcc--ccccccccccchhhHHHHHHHHHHHhh---hccCc--ccc-cCCCCeE-Eeeeec-----
Confidence 999999999998764321 0010 000000000 00000 00000 000 0111122 211110
Q ss_pred cCCCChhhhhccccccCccccchHHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHH
Q 001122 817 GFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIR 896 (1149)
Q Consensus 817 ~fP~~P~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~ 896 (1149)
.|+ ...+...++.+|.+|++.|+|.++||+++. .+..+|..++
T Consensus 246 ---------------~g~----~~~l~~~~~~li~~A~~~i~I~TPYF~p~~-----------------~l~~~L~~a~- 288 (451)
T PRK09428 246 ---------------LGK----KNLLNKTIFHLMASAEQKLTICTPYFNLPA-----------------ILVRNIIRLL- 288 (451)
T ss_pred ---------------cCC----chHHHHHHHHHHhccCcEEEEEeCCcCCCH-----------------HHHHHHHHHH-
Confidence 011 136788999999999999999999999864 4556666554
Q ss_pred cCCCcEEEEEecCCCCCCCCCchhHHHHHHHHHhHhhHHHH----H---HHHHHHcC---CceeecccccccccccCCcc
Q 001122 897 AHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYET----I---YKALVEVG---LEGAFSPQDYLNFFCLGNRE 966 (1149)
Q Consensus 897 a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~s----i---~~~L~~~G---v~~~~~P~dYl~f~~L~~re 966 (1149)
++|++|.||+|..-........++.++.|.... ..|+. + ++.|.++| ++++. |
T Consensus 289 -~rGv~V~Ii~~~~~andfy~~~d~~~~~~~~~p--y~ye~~lr~f~~~~~~li~~G~l~v~i~~----~---------- 351 (451)
T PRK09428 289 -RRGKKVEIIVGDKTANDFYIPPDEPFKIIGALP--YLYEINLRRFAKRLQYYIDNGQLNVRLWK----D---------- 351 (451)
T ss_pred -hcCCcEEEEcCCcccccCcCCCccHHHHhhhhH--HHHHHhhhhhHHHhhhhhhcCcceEEEEe----c----------
Confidence 589999999997422111122455565554432 11111 1 22455666 54432 0
Q ss_pred cccccCCCCCCCCCCCCChhhhccccCcccceeeeEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeCcchh
Q 001122 967 VIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 967 ~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
..-.+|+|+|+|||+|++|||+|||.||+. +|+|+++.|+|+...
T Consensus 352 ----------------------------~~~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~~~ 396 (451)
T PRK09428 352 ----------------------------GDNSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLIHDPKQE 396 (451)
T ss_pred ----------------------------CCCcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEEECChHH
Confidence 023799999999999999999999999998 999999999999743
No 11
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=7.7e-32 Score=316.75 Aligned_cols=326 Identities=16% Similarity=0.191 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHhhcceEEEEEeccceeeEEeCC-CCchHHHHHHHHHHHhhcCCcEEEEEecCCCcccccccccccccc
Q 001122 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDA-SPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1149)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~-~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~ 623 (1149)
.+|+.+.++|.+||++|+|+.+.|.+ .+. ....|.+|.++|++||+|||+||||+ |..+..
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s~yf~~-----~d~~~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~~------------ 87 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISSFYWSL-----SDEVGTNFGTMILNEIIQLPKRGVRVRIAV-NKSNKP------------ 87 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEeEEEec-----CccccchhHHHHHHHHHHHHHCCCEEEEEE-CCCCCc------------
Confidence 57899999999999999999985432 221 12357899999999999999999986 753210
Q ss_pred cccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCCCCCC
Q 001122 624 THDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 703 (1149)
Q Consensus 624 t~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~ 703 (1149)
....+.|+.+||+|..+.... + ...++|+|++|||++ ++|+||+|+.+ |+.+
T Consensus 88 ---~~~~~~L~~aGv~v~~~~~~~-----~-------~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~---- 139 (424)
T PHA02820 88 ---LKDVELLQMAGVEVRYIDITN-----I-------LGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT---- 139 (424)
T ss_pred ---hhhHHHHHhCCCEEEEEecCC-----C-------CcccceeeEEEECCC--------EEEEeCCcCCh-hhhh----
Confidence 122356778999998764321 1 235799999999996 99999999966 4421
Q ss_pred cccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEE--cCHHHHHHHHHHHHHHHhhcCCCCccccCcchhhhhhhccC
Q 001122 704 LFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKI--DGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERI 781 (1149)
Q Consensus 704 l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI--~GPaa~Dl~~~F~qrWn~at~~~~~~~l~~~~~~ll~~~~~ 781 (1149)
..+|+++++ +|++|.+|.+.|.+.|+..++.. ... +.. ..
T Consensus 140 ----------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~-~~~---~~~------~~ 181 (424)
T PHA02820 140 ----------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL-PYN---WKN------FY 181 (424)
T ss_pred ----------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCC-CCc---ccc------cc
Confidence 124677777 79999999999999999775321 000 000 00
Q ss_pred CCccCCCCCCCcccCCCCCceEEEEEeccCCcccccCCCChhhhhccccccCccccchHHHHHHHHHHHHhhccEEEEEE
Q 001122 782 PGIIGISDAPSVRENDAESWHVQVIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIEN 861 (1149)
Q Consensus 782 p~~~~~~~~p~~~~~~~~~~~VQ~vlRS~~~~s~~~fP~~P~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ar~~IYIEN 861 (1149)
|..... ..|. .....+....+ ++.+ +|... ...+ .....++|+.+|++||++|||++
T Consensus 182 ~~~~~~-~~p~-~~~~~~~~~~~-~~ss-----------sP~~~----~~~~-----r~~~~~~~l~~I~~Ak~~I~I~t 238 (424)
T PHA02820 182 PLYYNT-DHPL-SLNVSGVPHSV-FIAS-----------APQQL----CTME-----RTNDLTALLSCIRNASKFVYVSV 238 (424)
T ss_pred cccccc-CCCc-ccccCCccceE-EEeC-----------CChhh----cCCC-----CCchHHHHHHHHHHHhhEEEEEE
Confidence 100000 0000 00011111123 3332 12110 0000 12357999999999999999999
Q ss_pred eeeecCCC-------CcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHHhHhhH
Q 001122 862 QYFIGSSY-------NWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMM 934 (1149)
Q Consensus 862 QYFi~~~~-------~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~ 934 (1149)
+||+|+.+ .|. +|..+|.+|. +.|||+|+||+|.|++. ..+.|+.
T Consensus 239 pyfvP~~~~~~~~~~yw~-------------~i~~AL~~AA-~~RGV~VriLvp~~~d~--------~~~~~a~------ 290 (424)
T PHA02820 239 MNFIPIIYSKAGKILFWP-------------YIEDELRRAA-IDRKVSVKLLISCWQRS--------SFIMRNF------ 290 (424)
T ss_pred ccccceeeccCCcccchH-------------HHHHHHHHHH-HhCCCEEEEEEeccCCC--------CccHHHH------
Confidence 99999821 243 3555554321 36999999999998642 2233332
Q ss_pred HHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccceeeeEEEEEeCeEEEEc
Q 001122 935 YETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILG 1014 (1149)
Q Consensus 935 ~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iYVHSKlmIVDD~~viIG 1014 (1149)
...++.|.++|++++. .+|....+ + ..-....++|||+||||| ++.||
T Consensus 291 -~~~l~~L~~~gv~I~V------k~y~~p~~------~------------------~~~~~~~f~HaK~~vvD~-~a~IG 338 (424)
T PHA02820 291 -LRSIAMLKSKNINIEV------KLFIVPDA------D------------------PPIPYSRVNHAKYMVTDK-TAYIG 338 (424)
T ss_pred -HHHHHHHhccCceEEE------EEEEcCcc------c------------------ccCCcceeeeeeEEEEcc-cEEEE
Confidence 2457888889988741 11211000 0 000013589999999997 69999
Q ss_pred ccCcccccCCCCCCcceEEEEeCcc
Q 001122 1015 SANINQRSMEGTRDTEIAMGAYQPE 1039 (1149)
Q Consensus 1015 SANiN~RSm~G~~DsEiav~i~dp~ 1039 (1149)
|||||.|||. .|.|+++.+++.+
T Consensus 339 TsN~D~rsf~--~n~ev~~~i~~~~ 361 (424)
T PHA02820 339 TSNWTGNYFT--DTCGVSINITPDD 361 (424)
T ss_pred CCcCCHHHHh--ccCcEEEEEecCC
Confidence 9999999998 8999999999863
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=5.6e-31 Score=305.54 Aligned_cols=318 Identities=16% Similarity=0.182 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCccccccccccccccc
Q 001122 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1149)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t 624 (1149)
.+|++++++|++||++|+|+.|.+ .++++. .|.+|.++|++||+|||+||||+ |..++
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~-----~~~~d~--~g~~i~~aL~~aa~rGV~Vril~-D~~~~-------------- 88 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCC-----NLRSTP--EGRLILDKLKEAAESGVKVTILV-DEQSG-------------- 88 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEe-----cccCCc--hHHHHHHHHHHhccCCCeEEEEe-cCCCC--------------
Confidence 579999999999999999999942 134443 78999999999999999999996 87542
Q ss_pred ccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCCCCCCc
Q 001122 625 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 704 (1149)
Q Consensus 625 ~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l 704 (1149)
....+.|+.+||++..+.... + +..+..|.|++|||++ +||+||+||+++++.. .|
T Consensus 89 --~~~~~~L~~~Gv~v~~~~~~~------~-----~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~~~~~~-~~-- 144 (369)
T PHA03003 89 --DKDEEELQSSNINYIKVDIGK------L-----NNVGVLLGSFWVSDDR--------RCYIGNASLTGGSIST-IK-- 144 (369)
T ss_pred --CccHHHHHHcCCEEEEEeccc------c-----CCCCceeeeEEEEcCc--------EEEEecCccCCcccCc-cc--
Confidence 123467788899987653210 0 0012358899999996 9999999999965531 11
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccccCcchhhhhhhccCCCc
Q 001122 705 FRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGI 784 (1149)
Q Consensus 705 ~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~at~~~~~~~l~~~~~~ll~~~~~p~~ 784 (1149)
..+.|+|. ||+|.+|+..|.+.|..++++....... . ....|..
T Consensus 145 ------------------------~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~~~-----~--~~~~~~~ 188 (369)
T PHA03003 145 ------------------------TLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNRLC-----C--ACCLPVS 188 (369)
T ss_pred ------------------------cceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcccccc-----c--ccCCccc
Confidence 23578883 9999999999999999765432100000 0 0000000
Q ss_pred cCCCCCCCcccCCCCCceEEEEEeccCCcccccCCCChhhhhccccccCccccchHHHHHHHHHHHHhhccEEEEEEeee
Q 001122 785 IGISDAPSVRENDAESWHVQVIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYF 864 (1149)
Q Consensus 785 ~~~~~~p~~~~~~~~~~~VQ~vlRS~~~~s~~~fP~~P~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ar~~IYIENQYF 864 (1149)
..... ..+ ...+ ++.+ +|.... +. ....++++|+++|.+||++|+|+++||
T Consensus 189 -----~~~~~-~~~--~~~~-~~~s-----------~P~~~~------~~---~~~~~~~~ll~~I~~Ak~~I~I~t~yf 239 (369)
T PHA03003 189 -----TKYHI-NNP--IGGV-FFSD-----------SPEHLL------GY---SRTLDADVVLHKIKSAKKSIDLELLSL 239 (369)
T ss_pred -----ccccc-cCC--Ccce-EEec-----------CChHHc------CC---CCCcCHHHHHHHHHHHhhEEEEEEecc
Confidence 00000 001 1112 2211 222100 00 012478999999999999999999999
Q ss_pred ecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHHhHhhHHHHHHHHHHH
Q 001122 865 IGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVE 944 (1149)
Q Consensus 865 i~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~ 944 (1149)
++..... +.. ....++..+|.+|. ++|||+|+||+|.+... +. ....+++.|++
T Consensus 240 ~P~~~~d---~~~----~~~~~i~~AL~~AA-a~RGV~VRILv~~~~~~------~~------------~~~~~~~~L~~ 293 (369)
T PHA03003 240 VPVIRED---DKT----TYWPDIYNALIRAA-INRGVKVRLLVGSWKKN------DV------------YSMASVKSLQA 293 (369)
T ss_pred ccEEeeC---CCC----ccHHHHHHHHHHHH-HcCCCEEEEEEecCCcC------Cc------------hhhhHHHHHHH
Confidence 8752100 000 00124555655431 26999999999975211 10 01246778999
Q ss_pred cCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccceeeeEEEEEeCeEEEEcccCcccccCC
Q 001122 945 VGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSME 1024 (1149)
Q Consensus 945 ~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~ 1024 (1149)
+|++... .+.+| ....|+|+|||||++++|||+||+.||+.
T Consensus 294 ~G~~~~i----~vri~-----------------------------------~~~~H~K~~VVD~~~a~iGS~N~d~~s~~ 334 (369)
T PHA03003 294 LCVGNDL----SVKVF-----------------------------------RIPNNTKLLIVDDEFAHITSANFDGTHYL 334 (369)
T ss_pred cCCCCCc----eEeee-----------------------------------cCCCCceEEEEcCCEEEEeccccCchhhc
Confidence 9954210 00000 00169999999999999999999999998
Q ss_pred CCCCcceEEEEeCcch
Q 001122 1025 GTRDTEIAMGAYQPEY 1040 (1149)
Q Consensus 1025 G~~DsEiav~i~dp~~ 1040 (1149)
.+.|+++.++++..
T Consensus 335 --~~~e~~~~~~~~~~ 348 (369)
T PHA03003 335 --HHAFVSFNTIDKEL 348 (369)
T ss_pred --cCCCeEEecCChhH
Confidence 78999988777654
No 13
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.93 E-value=3.1e-26 Score=273.94 Aligned_cols=178 Identities=19% Similarity=0.300 Sum_probs=148.5
Q ss_pred cCCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece--------------
Q 001122 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1149)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~G-------------- 347 (1149)
...+.+|+.||.++|+ +| |+|.|||||||+|+.+|+ +||||||+ |+.++.|+|++|
T Consensus 374 ~~~~~~~v~~nk~~L~RIY---PkG~RvdSSNynP~~~W~----~GcQMVALN~Qt~d~~M~LN~G~F~~NG~CGYVLKP 446 (598)
T PLN02230 374 ASYGADVIRFTQKNFLRIY---PKGTRFNSSNYKPQIGWM----SGAQMIAFNMQGYGRALWLMEGMFRANGGCGYVKKP 446 (598)
T ss_pred HhhhHHHHHhhhhhceeeC---CCCCcCCCCCCCchhHhc----CceEEeeecccCCChHHHhhcchhccCCCCCceECC
Confidence 4677899999999999 99 999999999999998888 99999999 999998888776
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeee
Q 001122 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTF 400 (1149)
Q Consensus 348 -----------------------tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTk 400 (1149)
+|+|+|+.|++|.. +....+++.+. ..||||+|.|.| ....||+
T Consensus 447 ~~Lr~~~~~~~~fdP~~~~~~~~~L~V~VisGq~~~l-~~~k~~~~~~s--------~~DpyV~Vei~Gvp~D~~~~kT~ 517 (598)
T PLN02230 447 DFLMDAGPNGQDFYPKDNSCPKKTLKVKVCMGDGWLL-DFKKTHFDSYS--------PPDFFVRVGIAGAPVDEVMEKTK 517 (598)
T ss_pred HHhcCCCccccccCCCcCCCcCcEEEEEEEEccCccC-CCccccCCCCC--------CCCceEEEEEEECCCCCccccee
Confidence 58899999998852 22111122222 279999999965 2335999
Q ss_pred eeeCCCCCeeceEEEEEccCCC-cEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEE
Q 001122 401 VISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1149)
Q Consensus 401 Vi~nt~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L 478 (1149)
|+.|++||+|||+|.|++..++ +.|+|+|+|+|. .+++|||+++|||.+|+.|. +.++|++.+|.++.. .+|.+
T Consensus 518 v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~-~~Ll~ 593 (598)
T PLN02230 518 IEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSS-TRLLM 593 (598)
T ss_pred ccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCC-CeeEE
Confidence 9999999999999999987775 899999999998 57899999999999999997 569999999998763 46666
Q ss_pred EEEe
Q 001122 479 SIQY 482 (1149)
Q Consensus 479 ~l~f 482 (1149)
+++|
T Consensus 594 ~f~~ 597 (598)
T PLN02230 594 RFEF 597 (598)
T ss_pred EEEe
Confidence 6655
No 14
>PLN02223 phosphoinositide phospholipase C
Probab=99.93 E-value=1.7e-25 Score=263.10 Aligned_cols=174 Identities=21% Similarity=0.364 Sum_probs=143.6
Q ss_pred CCCcccCCCCCcc-cCCcccCCCC-cCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece----------------
Q 001122 288 PGGFYGYPNDSFS-SYPERAYLGM-IDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG---------------- 347 (1149)
Q Consensus 288 ~~~~~~~~~~~~~-~~~~~~~~~r-~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~G---------------- 347 (1149)
+.+|+.||.+.|+ +| |+|.| +|||||+|+.+|+ +||||||+ |+.+++|+|++|
T Consensus 317 ~~~~v~ft~~~l~RiY---PkG~R~~dSSNYnP~~~W~----~GcQmVALN~QT~d~~M~LN~G~F~~NG~CGYVLKP~~ 389 (537)
T PLN02223 317 ERDIISFTQKKFLRTR---PKKKNLLINAPYKPQRAWM----HGAQLIALSRKDDKEKLWLMQGMFRANGGCGYVKKPDF 389 (537)
T ss_pred chhhhhhcccceEEEC---CCCCccccCCCCCChhhcc----cceeEeeeccCCCChhHHhhcchhccCCCCCceECChh
Confidence 4789999999999 99 99999 5999999999998 99999999 999998888777
Q ss_pred --------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeee
Q 001122 348 --------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVIS 403 (1149)
Q Consensus 348 --------------------tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~ 403 (1149)
+|+|+|++|++|. .++..+. +... ..||||+|+|.| ....||+|..
T Consensus 390 Lr~~~~~~~FdP~~~~~~~~~L~V~Visgq~~~-~~~~k~~-~~~s--------~~DpyV~VeI~Gvp~D~~~~kT~v~n 459 (537)
T PLN02223 390 LLNAGPSGVFYPTENPVVVKILKVKIYMGDGWI-VDFKKRI-GRLS--------KPDLYVRISIAGVPHDEKIMKTTVKN 459 (537)
T ss_pred hccCCcccccCCCCCcccceEEEEEEEEccccc-CCccccc-CCCC--------CCCeEEEEEEeeccCCcceeEEEeCC
Confidence 4889999999986 3321110 1111 279999999976 2334888888
Q ss_pred CCCCCeeceEEEEEccCCC-cEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEE
Q 001122 404 NSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1149)
Q Consensus 404 nt~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~ 481 (1149)
|++||+|||+|.|.+..++ +.|+|+|+|+|. .+++|||+++|||.+|+.|. ++++|++++|+++.. .+|.++++
T Consensus 460 Ng~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~-~~Ll~~f~ 535 (537)
T PLN02223 460 NEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSS-TMLLTRFK 535 (537)
T ss_pred CCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCC-ceEEEEEE
Confidence 8999999999999997775 789999999998 56889999999999999997 679999999998763 35555554
Q ss_pred e
Q 001122 482 Y 482 (1149)
Q Consensus 482 f 482 (1149)
|
T Consensus 536 ~ 536 (537)
T PLN02223 536 W 536 (537)
T ss_pred e
Confidence 4
No 15
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.92 E-value=5.4e-26 Score=270.66 Aligned_cols=177 Identities=25% Similarity=0.354 Sum_probs=150.8
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece---------------
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~G--------------- 347 (1149)
..+.+|+.||.+.|+ +| |++.|+|||||+|+.+|+ +||||||+ |++++.++|++|
T Consensus 524 ~~~~~~v~~t~r~L~RvY---P~~~R~dSSNynPq~~W~----~G~QmVAlN~Qt~G~~l~L~~G~Fr~NGgCGYVlKP~ 596 (746)
T KOG0169|consen 524 EYGPDFVRHTQRNLLRVY---PKGLRVDSSNYNPQEFWN----HGCQMVALNFQTPGRMLDLNQGMFRANGGCGYVLKPD 596 (746)
T ss_pred HhhhHHHHHhHhheeeec---CCccccCCCCCChHHHHh----cCceEEEEecCCCChhhhhhhhhhccCCCccceECcH
Confidence 567799999999999 99 999999999999998888 99999999 999999999888
Q ss_pred --------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEeeee-ee
Q 001122 348 --------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTF-VI 402 (1149)
Q Consensus 348 --------------------tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~----~~~rTk-Vi 402 (1149)
||+|+|++++++.. ++..++++.+ +||||.|+|.|. ...+|+ |.
T Consensus 597 ~L~~~~~~F~P~~~~~~~~~tL~IkI~sGq~~~~-~~~~~~~~~~----------~dP~v~VeI~Gvp~D~~~~~Tk~v~ 665 (746)
T KOG0169|consen 597 FLLDSGSTFDPKSNLPPVKKTLKIKIISGQGWLP-DFGKTKFGEI----------SDPDVYVEIAGVPADCAEQKTKVVK 665 (746)
T ss_pred HHcCCCCccCCCCCCCCCCceeEEEEEecCcccC-CCCCCccccc----------CCCCEEEEEcccccchhhhhceeec
Confidence 69999999998863 3323222222 799999999773 335999 55
Q ss_pred eCCCCCeeceEEEEEccCCC-cEEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEE
Q 001122 403 SNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSI 480 (1149)
Q Consensus 403 ~nt~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~~~-ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l 480 (1149)
.|++||.|+|+|+|.+..++ +.|+|.|+|+|..+ |||+|+.+||+++|..|. +-++|++..|+.+.. ..|.+++
T Consensus 666 ~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~-asLfv~i 741 (746)
T KOG0169|consen 666 NNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSS-ASLFVRI 741 (746)
T ss_pred cCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce---eeeeecCCCCccccc-eeEEEEE
Confidence 56999999999999998886 89999999999966 999999999999999997 459999999998763 4777777
Q ss_pred Eeec
Q 001122 481 QYTP 484 (1149)
Q Consensus 481 ~f~p 484 (1149)
.+.+
T Consensus 742 ~~~~ 745 (746)
T KOG0169|consen 742 AIVE 745 (746)
T ss_pred EEec
Confidence 7643
No 16
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.92 E-value=6.1e-25 Score=262.61 Aligned_cols=178 Identities=19% Similarity=0.312 Sum_probs=147.3
Q ss_pred cCCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece--------------
Q 001122 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1149)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~G-------------- 347 (1149)
...+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|+ +||||||+ |+.++.|+|.+|
T Consensus 357 ~~~~~~~v~~n~~~L~RiY---P~G~RvdSSNynP~~~W~----~G~QmVALN~QT~d~~M~LN~G~F~~NG~cGYVLKP 429 (581)
T PLN02222 357 EKYAKQIVRFTQHNLLRIY---PKGTRVTSSNYNPLVGWS----HGAQMVAFNMQGYGRSLWLMQGMFRANGGCGYIKKP 429 (581)
T ss_pred HhhhHHHHHHhhhhceeeC---CCCCcCcCCCCCchhHhc----CCcEEeeccccCCChhhhhhcchhccCCCCceEECC
Confidence 4677899999999999 99 999999999999999998 99999999 999998887666
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeee
Q 001122 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTF 400 (1149)
Q Consensus 348 -----------------------tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTk 400 (1149)
+|+|+|+.|.+|. .+....+++.+. ..||||+|.|.| ....||+
T Consensus 430 ~~lr~~~~~~~~fdp~~~~~~~~~L~V~Visgq~~~-l~~~~~~~~~~~--------~~dpyV~Vei~G~p~D~~~~rTk 500 (581)
T PLN02222 430 DLLLKSGSDSDIFDPKATLPVKTTLRVTIYMGEGWY-FDFRHTHFDQYS--------PPDFYTRVGIAGVPGDTVMKKTK 500 (581)
T ss_pred HHhccCCccccccCCCCCCCccceEEEEEEEccccc-CCCCccccCCCC--------CCCeeEEEEEeccCCCcceeeeE
Confidence 4889999999864 111111111111 279999999965 2335999
Q ss_pred eeeCCCCCeeceEEEEEccCCC-cEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEE
Q 001122 401 VISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1149)
Q Consensus 401 Vi~nt~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L 478 (1149)
++.++.||+|||+|.|.+..+. +.|+|+|+|+|. .+++|||+++|||..|+.|. +.++|++.+|.++.. ..|.+
T Consensus 501 ~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~-a~Lfv 576 (581)
T PLN02222 501 TLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKS-VKLLV 576 (581)
T ss_pred ecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCC-eeEEE
Confidence 9999999999999999987765 899999999998 56889999999999999997 569999999998763 57777
Q ss_pred EEEe
Q 001122 479 SIQY 482 (1149)
Q Consensus 479 ~l~f 482 (1149)
++.|
T Consensus 577 ~~~~ 580 (581)
T PLN02222 577 KVEF 580 (581)
T ss_pred EEEe
Confidence 7665
No 17
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.91 E-value=4.4e-24 Score=220.19 Aligned_cols=142 Identities=55% Similarity=0.884 Sum_probs=125.6
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCcccccccccc---------------CCCCCCCCcEEEEEECCEEEeeeeeeeCCC
Q 001122 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQ---------------MNTKITSDPYVTIAVAGAVVGRTFVISNSE 406 (1149)
Q Consensus 342 ~~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~---------------~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~ 406 (1149)
.+||||+|+|+|++|++|++||..+.+.++++.+. ....+++||||+|.+++.+++||++++++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~ 81 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSE 81 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCC
Confidence 46899999999999999999997655555555431 023456899999999998888999999999
Q ss_pred CCeeceEEEEEccCCCcEEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEee
Q 001122 407 DPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 407 NPvWNE~F~f~v~~~~~~L~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~ 483 (1149)
||+|||+|.|.+.+..+.|.|+|+|+|..++++||++.|+++++..|...+.||+|.+..|++.+.+++|+|+++|+
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999999988888999999999998999999999999999999889999999998899888889999999995
No 18
>PLN02952 phosphoinositide phospholipase C
Probab=99.91 E-value=1.3e-24 Score=260.61 Aligned_cols=176 Identities=19% Similarity=0.307 Sum_probs=144.6
Q ss_pred cCCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece--------------
Q 001122 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1149)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~G-------------- 347 (1149)
...+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.|+|.+|
T Consensus 375 ~~~~~~~v~~n~~~l~RiY---P~g~R~dSsNy~P~~~W~----~G~QmVAlN~Qt~d~~m~lN~g~F~~NG~cGYVlKP 447 (599)
T PLN02952 375 TTNGQDVVRFTQRNILRIY---PKGTRITSSNYKPLIGWM----HGAQMIAFNMQGYGKSLWLMHGMFRANGGCGYLKKP 447 (599)
T ss_pred HhhHHHHHHHhhhhceeeC---CCCCcCcCCCCCchhHhc----CccEEeeecccCCChHHHhhhchhccCCCCCceECC
Confidence 3567789999999999 99 999999999999998888 99999999 999987776555
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeee
Q 001122 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTF 400 (1149)
Q Consensus 348 -----------------------tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTk 400 (1149)
+|+|+|+.|++|+. +...++++.+.. .||||+|.+.| ....||+
T Consensus 448 ~~lr~~~~~~~~fdp~~~~~~~~~L~V~VisGq~l~l-p~~~~~~~~~~~--------~D~yV~V~i~G~p~D~~~~kTk 518 (599)
T PLN02952 448 DFLMKKGFHDEVFDPKKKLPVKKTLKVKVYLGDGWRL-DFSHTHFDSYSP--------PDFYTKMYIVGVPADNAKKKTK 518 (599)
T ss_pred HHHcccCCcccccCCCCCCCccceEEEEEEECcccCC-CCccccCCccCC--------CCceEEEEEeccCCCCcceeee
Confidence 58899999999862 222222222222 69999999976 2334999
Q ss_pred eeeCCCCCeeceEEEEEccCCC-cEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEE
Q 001122 401 VISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1149)
Q Consensus 401 Vi~nt~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L 478 (1149)
++.++.||+|||+|.|.+..+. +.|+|+|+|+|. .+++|||+++|||.+|+.|. +|++|.+.+|++++ .++|
T Consensus 519 vi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~---~a~L 592 (599)
T PLN02952 519 IIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLK---NVRL 592 (599)
T ss_pred eccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCC---CEEE
Confidence 9999999999999999987664 789999999998 45889999999999999997 59999999998775 3444
Q ss_pred EEEe
Q 001122 479 SIQY 482 (1149)
Q Consensus 479 ~l~f 482 (1149)
.|+|
T Consensus 593 lv~f 596 (599)
T PLN02952 593 LMRF 596 (599)
T ss_pred EEEE
Confidence 4444
No 19
>PLN02228 Phosphoinositide phospholipase C
Probab=99.90 E-value=1e-23 Score=251.67 Aligned_cols=180 Identities=21% Similarity=0.321 Sum_probs=148.4
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece---------------
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~G--------------- 347 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.+..|+|.+|
T Consensus 340 ~~~~~~v~hNkr~l~RvY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~QT~d~~M~lN~g~F~~NG~cGYVLKP~ 412 (567)
T PLN02228 340 TRGTDLVRFTQRNLVRIY---PKGTRVDSSNYDPHVGWT----HGAQMVAFNMQGHGKQLWIMQGMFRANGGCGYVKKPR 412 (567)
T ss_pred hhHHHHHHHhhhhceeeC---CCCCcCCCCCCCchhHhc----CccEEeeecccCCChHHHhhcCchhhCCCCCceeCch
Confidence 466889999999999 99 999999999999999998 99999999 999988877665
Q ss_pred -------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEeeeeeeeC
Q 001122 348 -------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISN 404 (1149)
Q Consensus 348 -------------------tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~----~~~rTkVi~n 404 (1149)
+|+|+|++|++|+ .++...+.+.+ ...||||+|.+.|. ...||+++.+
T Consensus 413 ~Lr~~~~~f~p~~~~p~~~~L~I~ViSGq~l~-lp~~~~~~~~~--------~~~DpyV~Vei~G~p~D~~~~rTk~~~n 483 (567)
T PLN02228 413 ILLDEHTLFDPCKRLPIKTTLKVKIYTGEGWD-LDFHLTHFDQY--------SPPDFFVKIGIAGVPRDTVSYRTETAVD 483 (567)
T ss_pred hhcccccccCCccCCCcCceEEEEEEECCccC-CCCCCCCCCCC--------CCCCcEEEEEEEecCCCCCcceeeccCC
Confidence 4899999999984 11111111111 12799999999652 2249999999
Q ss_pred CCCCee-ceEEEEEccCCC-cEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEE
Q 001122 405 SEDPVW-QQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1149)
Q Consensus 405 t~NPvW-NE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~ 481 (1149)
+.||+| ||+|.|.+..+. +.|+|+|+|+|. .+++|||+++|||..|+.|. +.++|++.+|+... .++|.+++.
T Consensus 484 ~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~ 559 (567)
T PLN02228 484 QWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFA 559 (567)
T ss_pred CCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEE
Confidence 999999 999999987765 899999999996 56889999999999999997 56999999999875 458888888
Q ss_pred eecc
Q 001122 482 YTPM 485 (1149)
Q Consensus 482 f~p~ 485 (1149)
+.+.
T Consensus 560 ~~~~ 563 (567)
T PLN02228 560 LDPP 563 (567)
T ss_pred EcCc
Confidence 7653
No 20
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.89 E-value=2.3e-23 Score=244.21 Aligned_cols=177 Identities=23% Similarity=0.372 Sum_probs=148.1
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece---------------
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~G--------------- 347 (1149)
+.+.+|.-||++++| .| |+|.|+|||||+|++||+ +|+||||+ |+++++|.|.++
T Consensus 972 q~~~~lL~ynr~qlSRVY---PkGqRldSsNy~P~pmWn----~GsqmVALN~QTgDKpMQmNqa~F~~ngrcGYvLqPs 1044 (1267)
T KOG1264|consen 972 QKPVDLLKYNRKQLSRVY---PKGQRLDSSNYDPFPMWN----CGSQMVALNFQTGDKPMQMNQALFSLNGRCGYVLQPS 1044 (1267)
T ss_pred hccccccccccccceeec---CCCcccccCCCCCccccc----ccceeEEeeccCCCchhhhhHHHhhcCCceeeEecch
Confidence 678899999999999 99 999999999999999999 99999999 999999987776
Q ss_pred ---------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEeeeee
Q 001122 348 ---------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFV 401 (1149)
Q Consensus 348 ---------------------tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~-----~~~~rTkV 401 (1149)
+|.|.|+.|+.|+.... | ...|||+|+|-| .+.++|.|
T Consensus 1045 ~Mrte~fdP~n~e~~~~l~p~~lsv~vigaRHL~k~gr-~---------------i~cPfVevEiiGa~~Dt~~~~t~~V 1108 (1267)
T KOG1264|consen 1045 SMRTEKFDPMNPESQRGLLPMTLSVKVLGARHLPKLGR-S---------------IACPFVEVEIIGAEYDTNKFKTTVV 1108 (1267)
T ss_pred hcccccCCCCChHHhccccceEEEEEEeeccccccCCC-C---------------ccCCcEEEEEeccccCCCceEEEEe
Confidence 68899999999983321 1 167999999865 45557788
Q ss_pred eeCCCCCeec-eEEEEEccCCC-cEEEEEEEEccCCCC-cceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEE
Q 001122 402 ISNSEDPVWQ-QHFYVPVAHSA-AEVHFFVKDSDVVGS-ELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1149)
Q Consensus 402 i~nt~NPvWN-E~F~f~v~~~~-~~L~~~V~D~D~~~d-dfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L 478 (1149)
+.|++||+|| |+|+|.+..+. +.|+|.|+|.|++++ .|||+++.||..|++|- +-++|.+.-.+-. ..++|.|
T Consensus 1109 ~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdl-ELaSLLv 1184 (1267)
T KOG1264|consen 1109 NDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDL-ELASLLV 1184 (1267)
T ss_pred ccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhh-hhhhhee
Confidence 8899999999 99999998885 899999999999775 49999999999999996 4588865543332 2457778
Q ss_pred EEEeecccccc
Q 001122 479 SIQYTPMERLS 489 (1149)
Q Consensus 479 ~l~f~p~~~d~ 489 (1149)
.++..|+.+..
T Consensus 1185 ~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1185 FIEMRPVLESE 1195 (1267)
T ss_pred eeEeccccCcc
Confidence 88877766543
No 21
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=99.86 E-value=2.7e-22 Score=176.51 Aligned_cols=72 Identities=54% Similarity=1.156 Sum_probs=70.4
Q ss_pred ccccCCCcchhHHHHHhhhhhhhhhHhhhhhhcccccccccCcceeCCCCCccCCCCCCCCCCCCCcccccc
Q 001122 1069 EDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSF 1140 (1149)
Q Consensus 1069 ~~~f~~p~s~~~~~~v~~~~~~nw~~~a~~~~~~~~ghL~~~p~~~~~~g~~~~~~g~~~fpd~~~~i~g~~ 1140 (1149)
++.|.+|+|++|||+||++|++||++|+++++++|+|||++||+.|+.||+|++|||+++||||+|+|+|++
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~ 73 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEVTDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSK 73 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhccccccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999986
No 22
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=5.3e-21 Score=188.68 Aligned_cols=118 Identities=22% Similarity=0.387 Sum_probs=104.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeC-CCCCeeceEEEEEccCCCcE
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHSAAE 424 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~n-t~NPvWNE~F~f~v~~~~~~ 424 (1149)
+|+|.|+|++|++|++.+ +|+ +||||+|.++++++ ||+++.+ +.||+|||+|.|.+.+....
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~---------------sDPYv~i~lg~~~~-kT~v~~~~~~nP~WNe~F~f~v~~~~~~ 63 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTR---------------MDPYCRIRVGHAVY-ETPTAYNGAKNPRWNKTIQCTLPEGVDS 63 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCC---------------CCceEEEEECCEEE-EeEEccCCCCCCccCeEEEEEecCCCcE
Confidence 489999999999998777 666 89999999999887 9999877 89999999999999877778
Q ss_pred EEEEEEEccCCC-CcceeeEEEece-eeccCCceeeeeeecCCCCCCCCCCCcEEEEEEe
Q 001122 425 VHFFVKDSDVVG-SELIGTVAIPVE-QIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 425 L~~~V~D~D~~~-ddfIG~a~IpL~-~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f 482 (1149)
|.|+|||+|.++ |++||.+.|+|. .+..|...+.||+|...+|++ ..|+|+|+|+|
T Consensus 64 l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i~l~l~y 121 (121)
T cd04016 64 IYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMINLVFSY 121 (121)
T ss_pred EEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEEEEEEeC
Confidence 999999999865 789999999996 688888889999998777764 45799999987
No 23
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=1.1e-19 Score=180.56 Aligned_cols=114 Identities=24% Similarity=0.308 Sum_probs=103.8
Q ss_pred EEEEEEEeeC---CCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEE
Q 001122 349 LDIWIYSAKN---LPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1149)
Q Consensus 349 L~VtVieAr~---L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L 425 (1149)
|+|+|++|+| |+.+|..|+ +||||+|.+++++. ||++++++.||+|||+|.|.+.+....|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~---------------sDPYv~i~~g~~~~-rTk~~~~~~nP~WnE~f~f~v~~~~~~l 65 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS---------------TDAYCVAKYGPKWV-RTRTVEDSSNPRWNEQYTWPVYDPCTVL 65 (126)
T ss_pred eEEEEEEeECCccccccccCCC---------------CCeeEEEEECCEEe-EcCcccCCCCCcceeEEEEEecCCCCEE
Confidence 8999999999 888888776 99999999998876 9999999999999999999998877899
Q ss_pred EEEEEEccCC-------CCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEE
Q 001122 426 HFFVKDSDVV-------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1149)
Q Consensus 426 ~~~V~D~D~~-------~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L 478 (1149)
.|+|||+|.. +|++||++.|+|.++..+...+.||+|.+.++++.+..|+|++
T Consensus 66 ~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 66 TVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999999986 7999999999999999998899999999877666667788875
No 24
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.81 E-value=2.5e-19 Score=181.90 Aligned_cols=124 Identities=25% Similarity=0.397 Sum_probs=110.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEE
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L 425 (1149)
.-.|.|+|+||++|+.+ .||||+|.+++++++||+++.++.||.|||+|+|.+.+....|
T Consensus 10 ~~sL~v~V~EAk~Lp~~--------------------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l 69 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--------------------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVI 69 (146)
T ss_pred EEEEEEEEEEccCCCCc--------------------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEE
Confidence 35799999999999853 4899999999999999999999999999999999998888899
Q ss_pred EEEEEEcc-CC----CCcceeeEEEeceeeccCCceeeeeeecCCCCCC-------CCCCCcEEEEEEeecccccc
Q 001122 426 HFFVKDSD-VV----GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP-------CKPGATLTLSIQYTPMERLS 489 (1149)
Q Consensus 426 ~~~V~D~D-~~----~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~-------~~~~g~L~L~l~f~p~~~d~ 489 (1149)
+|.|++.+ .. ++++||++.||+++|..|..+++||+|++.++++ .+.+++|||+++|.++...+
T Consensus 70 ~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 70 TVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred EEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCC
Confidence 99996544 33 5789999999999999999999999999998887 66778999999999987654
No 25
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.81 E-value=4.3e-19 Score=174.57 Aligned_cols=119 Identities=23% Similarity=0.363 Sum_probs=107.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~~ 428 (1149)
|+|+|++|++|+..|..+. +||||+|.+++....||+++.++.||+|||+|.|.+......|.|+
T Consensus 2 L~v~v~~a~~L~~~d~~g~---------------~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~ 66 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGT---------------SDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIK 66 (121)
T ss_pred eEEEEEEeeCCCCcCCCCC---------------CCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEE
Confidence 7999999999998888776 8999999999877779999999999999999999998777899999
Q ss_pred EEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeec
Q 001122 429 VKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 429 V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p 484 (1149)
|||+|.. ++++||++.+++.+|..+...+.|++|.+.++. +..|+|+|.++|+|
T Consensus 67 v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~~~~~~ 121 (121)
T cd04042 67 VFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLVVTLTP 121 (121)
T ss_pred EEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEEEEECC
Confidence 9999996 789999999999999988889999999876653 34689999999976
No 26
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.80 E-value=2.6e-19 Score=177.43 Aligned_cols=117 Identities=21% Similarity=0.374 Sum_probs=101.8
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccC------CC
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH------SA 422 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~------~~ 422 (1149)
|+|+|++|+||+.+|..|. +||||+|.+++.+. ||++++++.||+|||+|.|.+.. ..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~---------------~dpYv~v~l~~~~~-kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~ 64 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT---------------NDAYVIIQLGKEKY-STSVKEKTTSPVWKEECSFELPGLLSGNGNR 64 (126)
T ss_pred CEEEEEECcCCcCCCCCcC---------------CCceEEEEECCeee-eeeeecCCCCCEeCceEEEEecCcccCCCcC
Confidence 5799999999998887776 89999999988775 99999999999999999999876 35
Q ss_pred cEEEEEEEEccCCC-CcceeeEEEeceeec--cCCceeeeeeecCCCCCCCCCCCcEEEEEE
Q 001122 423 AEVHFFVKDSDVVG-SELIGTVAIPVEQIY--SGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1149)
Q Consensus 423 ~~L~~~V~D~D~~~-ddfIG~a~IpL~~L~--~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~ 481 (1149)
..|.|+|||++..+ |++||++.|++.++. .+...+.||+|.+..++..+..|+|+|+|+
T Consensus 65 ~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 65 ATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 78999999999854 899999999999988 566778999998766655556789999875
No 27
>PRK05443 polyphosphate kinase; Provisional
Probab=99.79 E-value=9.5e-18 Score=206.45 Aligned_cols=272 Identities=16% Similarity=0.164 Sum_probs=188.5
Q ss_pred chhHHHHHHHHHHHHhhc-----ceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCccccccc
Q 001122 542 VHGKCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGY 616 (1149)
Q Consensus 542 ~~~~~f~al~eAI~~Ar~-----sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~ 616 (1149)
.|=+.|+.+++.|++|.+ +|.|+-|.+. ....+.++|++||++||+|+||| +... .
T Consensus 345 ~PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~------------~~s~iv~aL~~Aa~~Gk~V~vlv-e~ka-r----- 405 (691)
T PRK05443 345 HPYESFDPVVEFLRQAAADPDVLAIKQTLYRTS------------KDSPIVDALIEAAENGKQVTVLV-ELKA-R----- 405 (691)
T ss_pred CCccCchHHHHHHHHhccCCCeeEEEEEEEEec------------CCHHHHHHHHHHHHcCCEEEEEE-ccCc-c-----
Confidence 334689999999999998 8999988542 23789999999999999999998 4321 0
Q ss_pred ccccccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCC
Q 001122 617 KMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 696 (1149)
Q Consensus 617 k~~g~~~t~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgR 696 (1149)
.....+..+.+.|+.+|++|+.-.. .+..|.|+++||++.++ +-+..|+||+.|+....
T Consensus 406 ----fde~~n~~~~~~L~~aGv~V~y~~~----------------~~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~~s 464 (691)
T PRK05443 406 ----FDEEANIRWARRLEEAGVHVVYGVV----------------GLKTHAKLALVVRREGG-GLRRYVHLGTGNYNPKT 464 (691)
T ss_pred ----ccHHHHHHHHHHHHHcCCEEEEccC----------------CccceeEEEEEEeecCC-ceeEEEEEcCCCCCcch
Confidence 0011223466678899999965321 23589999999996433 33459999999998842
Q ss_pred CCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEE-cCHHHHHHHHHHHHHHHhhcCCCCccccCcchhhh
Q 001122 697 YDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKI-DGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDAL 775 (1149)
Q Consensus 697 wDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI-~GPaa~Dl~~~F~qrWn~at~~~~~~~l~~~~~~l 775 (1149)
...|.|+.+.+ ++..+.|+...|...|......
T Consensus 465 ---------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~------------- 498 (691)
T PRK05443 465 ---------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPV------------- 498 (691)
T ss_pred ---------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCccc-------------
Confidence 13578999995 5568999999999887532110
Q ss_pred hhhccCCCccCCCCCCCcccCCCCCceEEEEEeccCCcccccCCCChhhhhccccccCccccchHHHHHHHHHHHHhhcc
Q 001122 776 LRIERIPGIIGISDAPSVRENDAESWHVQVIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH 855 (1149)
Q Consensus 776 l~~~~~p~~~~~~~~p~~~~~~~~~~~VQ~vlRS~~~~s~~~fP~~P~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ar~ 855 (1149)
.+. . ++-+ |.. ....|.+.+.+.|.+||+
T Consensus 499 ------------------------~~~-~-l~~s---------P~~----------------~~~~l~~~i~~ei~~Ak~ 527 (691)
T PRK05443 499 ------------------------KLR-K-LLVS---------PFT----------------LRERLLELIDREIANARA 527 (691)
T ss_pred ------------------------ccc-E-Eeec---------Ccc----------------HHHHHHHHHHHHHHHHhc
Confidence 000 1 1111 111 234688999999999999
Q ss_pred ----EEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEe-------cCCCCCCCCCchhHHHH
Q 001122 856 ----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVI-------PMWPEGVPTGAATQRIL 924 (1149)
Q Consensus 856 ----~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVl-------P~~Peg~p~~~s~~~il 924 (1149)
+|+|.+.||. +. .+..+|..| +.+||+|.|++ |..|+ .+++..+
T Consensus 528 G~~a~I~ik~n~l~-d~-----------------~ii~aL~~A--s~~GV~V~liVRGiC~l~pgipg-----~sd~i~v 582 (691)
T PRK05443 528 GKPARIIAKMNSLV-DP-----------------QIIDALYEA--SQAGVKIDLIVRGICCLRPGVPG-----LSENIRV 582 (691)
T ss_pred CCCCEEEEEcCCCC-CH-----------------HHHHHHHHH--HHCCCeEEEEEecccccCCCCCC-----CCCCEEE
Confidence 9999999954 32 466666665 46899999999 22221 1222111
Q ss_pred HHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccceeeeEEE
Q 001122 925 FWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGM 1004 (1149)
Q Consensus 925 ~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iYVHSKlm 1004 (1149)
.+++.+++++ +++++ |-..
T Consensus 583 -----------~s~v~r~Leh-~rIy~----------------------------------------------f~~g--- 601 (691)
T PRK05443 583 -----------RSIVGRFLEH-SRIYY----------------------------------------------FGNG--- 601 (691)
T ss_pred -----------HHHHHHHHhc-CEEEE----------------------------------------------EeCC---
Confidence 2466666663 45542 0000
Q ss_pred EEeCeEEEEcccCcccccCCCCCCcceEEEEeCcch
Q 001122 1005 IVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEY 1040 (1149)
Q Consensus 1005 IVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~ 1040 (1149)
||++++||||||+.|||. ++.|+++.|+|+..
T Consensus 602 --d~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~ 633 (691)
T PRK05443 602 --GDEEVYISSADWMPRNLD--RRVEVLFPILDPRL 633 (691)
T ss_pred --CCcEEEEECCCCCccccc--ceEEEeEEEeCHHH
Confidence 889999999999999998 99999999999875
No 28
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=5e-18 Score=173.77 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=104.9
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeC-CCCCeeceEEEEEccCC-CcEEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS-AAEVH 426 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~n-t~NPvWNE~F~f~v~~~-~~~L~ 426 (1149)
|+|+|++|++|+.+|.+|+ +||||+|.++++.. ||+++.+ +.||+|||+|.|.+.++ .+.|.
T Consensus 2 L~V~Vi~A~~L~~~d~~g~---------------sDPYV~v~l~~~~~-kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~ 65 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRV---------------PEVFVKAQLGNQVL-RTRPSQTRNGNPSWNEELMFVAAEPFEDHLI 65 (150)
T ss_pred EEEEEEEeECCCCCCCCCC---------------CCeEEEEEECCEEe-eeEeccCCCCCCcccCcEEEEecCccCCeEE
Confidence 8999999999999998876 89999999999764 9999977 69999999999999765 36899
Q ss_pred EEEEEccCC-CCcceeeEEEeceeeccC----CceeeeeeecCCCC-----CCCCCCCcEEEEEEeeccc
Q 001122 427 FFVKDSDVV-GSELIGTVAIPVEQIYSG----GKVEGTYPVLNGSG-----KPCKPGATLTLSIQYTPME 486 (1149)
Q Consensus 427 ~~V~D~D~~-~ddfIG~a~IpL~~L~~G----~~~~~W~~L~~~~g-----k~~~~~g~L~L~l~f~p~~ 486 (1149)
|+|+|++.. ++++||++.|+|.++..+ ...+.||+|.+..| ++.+..|+|+|+|+|....
T Consensus 66 v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 66 LSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY 135 (150)
T ss_pred EEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence 999999874 689999999999999754 45689999987765 5556678999999998543
No 29
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=9.6e-18 Score=166.62 Aligned_cols=119 Identities=19% Similarity=0.337 Sum_probs=100.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCC-cEE
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-AEV 425 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~-~~L 425 (1149)
..|+|+|++|++|+..+ . +||||+|.+++.+.+||+++ ++.||+|||+|.|.+.... ..+
T Consensus 4 ~~L~V~Vi~A~~L~~~~---~---------------~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l 64 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH---V---------------PHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSF 64 (126)
T ss_pred eEEEEEEEEeeCCCCCC---C---------------CCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEE
Confidence 46999999999998532 2 89999999998777799985 6899999999999975443 578
Q ss_pred EEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeec
Q 001122 426 HFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 426 ~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p 484 (1149)
+|.|+|++. .++++||++.|+|.++..|...+.||+|...+++..+..|+|+|+|+|.+
T Consensus 65 ~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 65 TISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 999999987 46899999999999999988889999998665433455689999999976
No 30
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=6.8e-18 Score=166.61 Aligned_cols=118 Identities=25% Similarity=0.342 Sum_probs=100.7
Q ss_pred EEEEEEEeeCCCCCCC-CCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEE
Q 001122 349 LDIWIYSAKNLPNMDM-FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~-~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1149)
|.|+|++|+||+.++. .|. +||||+|.++++..+||+++++|.||+|||+|.|.+.+....|.|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~---------------sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~ 66 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKM---------------RDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSF 66 (121)
T ss_pred eEEEEEEccCCCCCCCCCCC---------------cCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEE
Confidence 7899999999998753 333 899999999887778999999999999999999999876689999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEe
Q 001122 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 428 ~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f 482 (1149)
.|||+|.. ++++||++.++++++..+...+.||+|.... ...+..|+|+|+++|
T Consensus 67 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~~G~i~l~~~~ 121 (121)
T cd08401 67 YIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVD-ADSEVQGKVHLELRL 121 (121)
T ss_pred EEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccC-CCCcccEEEEEEEEC
Confidence 99999985 6899999999999999887889999997432 222346899999875
No 31
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.76 E-value=3.1e-18 Score=167.32 Aligned_cols=116 Identities=22% Similarity=0.432 Sum_probs=100.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeC-CCCCeeceEEEEEccCC-CcE
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS-AAE 424 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~n-t~NPvWNE~F~f~v~~~-~~~ 424 (1149)
|+|+|+|++|++|++.|..+. +||||+|.+++.+ +||+++.+ +.||+|||+|.|.+... ...
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~-~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~ 64 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK---------------QDPYCVLRIGGVT-KKTKTDFRGGQHPEWDEELRFEITEDKKPI 64 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC---------------CCceEEEEECCCc-cccccccCCCCCCccCceEEEEecCCCCCE
Confidence 789999999999999888776 8999999999865 59998765 79999999999999764 478
Q ss_pred EEEEEEEccCCCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEe
Q 001122 425 VHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 425 L~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f 482 (1149)
|.|+|||++..++++||++.+++.++..+...+.|++|.. +|+ ..|+|+|+|+|
T Consensus 65 l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~~---~~G~i~l~l~f 118 (118)
T cd08681 65 LKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KGR---YAGEVYLELTF 118 (118)
T ss_pred EEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CCc---EeeEEEEEEEC
Confidence 9999999998779999999999999987777789999964 343 34799999987
No 32
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=8.1e-18 Score=167.00 Aligned_cols=120 Identities=20% Similarity=0.295 Sum_probs=102.1
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCC----c
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA----A 423 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~----~ 423 (1149)
.|.|+|++|++|...|..+. +||||+|.+++++. ||++++++.||+|||+|.|.+.+.. .
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~---------------~dpyv~v~~~~~~~-rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~ 64 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS---------------SSAYVELDFDGQKK-RTRTKPKDLNPVWNEKLVFNVSDPSRLSNL 64 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC---------------cCcEEEEEECCEEe-cceeEcCCCCCccceEEEEEccCHHHccCC
Confidence 38999999999998887665 89999999999875 9999999999999999999987543 5
Q ss_pred EEEEEEEEccCC--CCcceeeEEEeceeec-cCCceeeeeeecCCCCCCCCCCCcEEEEEEeec
Q 001122 424 EVHFFVKDSDVV--GSELIGTVAIPVEQIY-SGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 424 ~L~~~V~D~D~~--~ddfIG~a~IpL~~L~-~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p 484 (1149)
.|.|+|||++.. +++|||++.|+++++. .+.....||+|..+ ++..+..|+|+|+++|+.
T Consensus 65 ~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 65 VLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVRGEIGLKVYITD 127 (127)
T ss_pred eEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCccEEEEEEEEEcC
Confidence 799999999885 6899999999999998 56777899999743 322234679999999863
No 33
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.73 E-value=3.3e-17 Score=162.50 Aligned_cols=122 Identities=16% Similarity=0.307 Sum_probs=102.7
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-EEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~-~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1149)
|.|+|++|++|+. ..|. +||||++.+++ ....||++++++.||+|||+|.|.+......|.|
T Consensus 1 l~v~v~~A~~L~~--~~g~---------------~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~ 63 (126)
T cd08678 1 LLVKNIKANGLSE--AAGS---------------SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLF 63 (126)
T ss_pred CEEEEEEecCCCC--CCCC---------------cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEE
Confidence 6799999999986 4454 89999999974 2335999999999999999999999766678999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeecccc
Q 001122 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1149)
Q Consensus 428 ~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~~~ 487 (1149)
+|||++.. ++++||++.+++.+|..+.....|++|....++..+..|+|+|.++|.+.++
T Consensus 64 ~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 64 EVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 99999985 5899999999999999887778999997554433345689999999987654
No 34
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.73 E-value=1.3e-16 Score=195.42 Aligned_cols=272 Identities=16% Similarity=0.188 Sum_probs=183.2
Q ss_pred hhHHHHHHHHHHHHhhc-----ceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCcccccccc
Q 001122 543 HGKCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYK 617 (1149)
Q Consensus 543 ~~~~f~al~eAI~~Ar~-----sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k 617 (1149)
|=+.|+.+++.|++|.+ +|.|+-|.+. . ..+|.++|++||++||+|+||| +-... .
T Consensus 337 PY~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~-------~-----~s~ii~aL~~Aa~~Gk~V~v~v-eLkAr---f--- 397 (672)
T TIGR03705 337 PYESFDPVVEFLRQAAEDPDVLAIKQTLYRTS-------K-----DSPIIDALIEAAENGKEVTVVV-ELKAR---F--- 397 (672)
T ss_pred CccCHHHHHHHHHHHhcCCCceEEEEEEEEec-------C-----CcHHHHHHHHHHHcCCEEEEEE-Eehhh---c---
Confidence 33678999999999998 8999988542 2 2689999999999999999998 41110 0
Q ss_pred cccccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCC
Q 001122 618 MDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRY 697 (1149)
Q Consensus 618 ~~g~~~t~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRw 697 (1149)
+ ...+..+.+.|+.+|++|+.-- ..+..|+|+++||.+.++ .-+..+++|.-|.+..
T Consensus 398 -d---e~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~~~-~~~~y~~igTgN~n~~-- 454 (672)
T TIGR03705 398 -D---EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREGG-ELRRYVHLGTGNYHPK-- 454 (672)
T ss_pred -c---chhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEeeCC-ceEEEEEecCCCCCCc--
Confidence 0 0122356678889999997621 124689999999985332 2234677776666553
Q ss_pred CCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeE-EcCHHHHHHHHHHHHHHHhhcCCCCccccCcchhhhh
Q 001122 698 DNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSK-IDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALL 776 (1149)
Q Consensus 698 Dt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vr-I~GPaa~Dl~~~F~qrWn~at~~~~~~~l~~~~~~ll 776 (1149)
-...|+|+++. .++..+.|+...|..-|....... +.
T Consensus 455 -------------------------------ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~-------~~---- 492 (672)
T TIGR03705 455 -------------------------------TARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK-------FK---- 492 (672)
T ss_pred -------------------------------ccccccceeEEEeChHHHHHHHHHHHHhhCCCcchh-------hH----
Confidence 11468999998 788899999999998775321100 00
Q ss_pred hhccCCCccCCCCCCCcccCCCCCceEEEEEeccCCcccccCCCChhhhhccccccCccccchHHHHHHHHHHHHhhcc-
Q 001122 777 RIERIPGIIGISDAPSVRENDAESWHVQVIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH- 855 (1149)
Q Consensus 777 ~~~~~p~~~~~~~~p~~~~~~~~~~~VQ~vlRS~~~~s~~~fP~~P~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ar~- 855 (1149)
. ++- +|.. ....+.+.+.+.|.+||+
T Consensus 493 ---------------------------~-l~~------------~P~~-------------~~~~~~~~i~~ei~~Ak~g 519 (672)
T TIGR03705 493 ---------------------------H-LLV------------SPFT-------------LRKRLLELIDREIENARAG 519 (672)
T ss_pred ---------------------------H-HHh------------Ccch-------------HHHHHHHHHHHHHHHHHcC
Confidence 0 000 0110 134688889999999999
Q ss_pred ---EEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecC---CCCCCCCCchhHHHHHHHHH
Q 001122 856 ---FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM---WPEGVPTGAATQRILFWQHK 929 (1149)
Q Consensus 856 ---~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~---~Peg~p~~~s~~~il~~~~r 929 (1149)
+|+|.+.||. +. ++..+|..| +.+||+|.+++-. +.-|.|. .+++..+
T Consensus 520 ~~~~I~ik~n~l~-D~-----------------~ii~aL~~A--s~aGV~V~LivRGiCcL~pgipg-~sd~i~v----- 573 (672)
T TIGR03705 520 KPARIIAKMNSLV-DP-----------------DLIDALYEA--SQAGVKIDLIVRGICCLRPGVPG-LSENIRV----- 573 (672)
T ss_pred CCCEEEEEcCCCC-CH-----------------HHHHHHHHH--HHCCCeEEEEEecccccCCCCCC-CCCCEEE-----
Confidence 9999999955 32 466666665 4689999999911 0001110 1111110
Q ss_pred hHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccceeeeEEEEE---
Q 001122 930 TMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIV--- 1006 (1149)
Q Consensus 930 Tm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iYVHSKlmIV--- 1006 (1149)
.+++.++++ |+|+++.
T Consensus 574 ------~siv~r~Le-------------------------------------------------------h~rIy~f~~~ 592 (672)
T TIGR03705 574 ------RSIVGRFLE-------------------------------------------------------HSRIYYFGNG 592 (672)
T ss_pred ------EEEhhHhhC-------------------------------------------------------cCEEEEEeCC
Confidence 023334443 4444444
Q ss_pred eCeEEEEcccCcccccCCCCCCcceEEEEeCcch
Q 001122 1007 DDEYVILGSANINQRSMEGTRDTEIAMGAYQPEY 1040 (1149)
Q Consensus 1007 DD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~ 1040 (1149)
||+++.||||||+.|||. ++.|+++.|+|+..
T Consensus 593 ~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~~ 624 (672)
T TIGR03705 593 GEEKVYISSADWMTRNLD--RRVEVLFPIEDPTL 624 (672)
T ss_pred CCcEEEEECCCCCCCccc--ceEEEEEEEcCHHH
Confidence 688999999999999998 99999999999874
No 35
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.73 E-value=2.2e-17 Score=163.04 Aligned_cols=112 Identities=21% Similarity=0.386 Sum_probs=97.1
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC-CcEEEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L~~ 427 (1149)
|.|+|++|++|+.+ . +||||+|.+.+.+ +||++++++.||+|||+|.|.+.+. ...|.|
T Consensus 2 L~V~Vi~a~~L~~~----~---------------~Dpyv~v~l~~~~-~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~ 61 (121)
T cd08378 2 LYVRVVKARGLPAN----S---------------NDPVVEVKLGNYK-GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEV 61 (121)
T ss_pred EEEEEEEecCCCcc----c---------------CCCEEEEEECCcc-ccccccCCCCCCccceEEEEEcCCCcCCEEEE
Confidence 89999999999865 3 8999999998865 5999999999999999999998774 578999
Q ss_pred EEEEccCCCCcceeeEEEeceeeccC-----CceeeeeeecCCCCCCCCCCCcEEEEEEe
Q 001122 428 FVKDSDVVGSELIGTVAIPVEQIYSG-----GKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 428 ~V~D~D~~~ddfIG~a~IpL~~L~~G-----~~~~~W~~L~~~~gk~~~~~g~L~L~l~f 482 (1149)
+|||+|..++++||++.++++++..+ ...+.||+|.+..+. +..|+|+|+|+|
T Consensus 62 ~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~--~~~G~i~l~~~~ 119 (121)
T cd08378 62 SVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGG--RVGGELMLAVWF 119 (121)
T ss_pred EEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCC--ccceEEEEEEEe
Confidence 99999988899999999999998753 235689999876653 345899999998
No 36
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.72 E-value=6.2e-17 Score=161.73 Aligned_cols=126 Identities=21% Similarity=0.379 Sum_probs=102.0
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCcc-ccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCC
Q 001122 344 LLHGNLDIWIYSAKNLPNMDMFHKT-LGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1149)
Q Consensus 344 Ll~GtL~VtVieAr~L~~~D~~g~~-~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~ 422 (1149)
++.|+|+|+|++|++|...|..+.. +.+. ....+||||+|.++++++++|++++++.||+|||+|.|.+. ..
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~------~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~ 73 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKK------GSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NG 73 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhccccc------CccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CC
Confidence 4679999999999999988763210 0000 00128999999999988889999999999999999999997 45
Q ss_pred cEEEEEEEEccCC-CCcceeeEEEeceeecc--CCceeeeeeecCCCCCCCCCCCcEEEEEEeec
Q 001122 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYS--GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 423 ~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~--G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p 484 (1149)
+.|.|+|+|++.. .+++||++.++|.++.. +...+.|++|. +.|+|+|+++|..
T Consensus 74 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 74 RNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 7899999998874 57899999999999997 56679999994 2368999998864
No 37
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.72 E-value=5.7e-17 Score=158.40 Aligned_cols=118 Identities=25% Similarity=0.400 Sum_probs=102.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEE
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~ 426 (1149)
|+|+|+|++|++|+.++..+. +||||+|.+.+.. +||++++++.||.|||+|.|.+.+....|.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~---------------~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~ 64 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK---------------SDPFCVLELVNAR-LQTHTIYKTLNPEWNKIFTFPIKDIHDVLE 64 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC---------------CCcEEEEEECCEe-eecceecCCcCCccCcEEEEEecCcCCEEE
Confidence 789999999999998887775 8999999998876 499999999999999999999987678999
Q ss_pred EEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEee
Q 001122 427 FFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 427 ~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~ 483 (1149)
|+|||++. .++++||++.+++.++..|. ..||+|.+..++. +..|+|.|+|+|.
T Consensus 65 ~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~~ 119 (119)
T cd08377 65 VTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDVI 119 (119)
T ss_pred EEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEeC
Confidence 99999998 56899999999999998664 5899998665443 2457999999874
No 38
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.71 E-value=6.5e-17 Score=158.16 Aligned_cols=120 Identities=23% Similarity=0.378 Sum_probs=98.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC-CcEE
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L 425 (1149)
|+|+|+|++|++|+.+|..... .....+||||+|.+++.. +||++++++.||+|||+|.|.+... ...|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~---------~~~g~~dPyv~v~~~~~~-~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l 70 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGG---------LVKGKSDPYVIVRVGAQT-FKSKVIKENLNPKWNEVYEAVVDEVPGQEL 70 (121)
T ss_pred CeEEEEEEEccCCccccccccc---------CCCCCcCCEEEEEECCEe-EEccccCCCCCCcccceEEEEeCCCCCCEE
Confidence 6799999999999988753100 000128999999999855 6999999999999999999998753 5789
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEe
Q 001122 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 426 ~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f 482 (1149)
.|+|+|++..++++||++.+++.++..+...+.||+|.+. ..|+|+|+++|
T Consensus 71 ~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 71 EIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred EEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 9999999988899999999999999987778899999643 23689998875
No 39
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.71 E-value=8.6e-17 Score=159.00 Aligned_cols=120 Identities=23% Similarity=0.422 Sum_probs=100.6
Q ss_pred eEEEEEEEEeeCCCCCCC--CCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccC-CCc
Q 001122 347 GNLDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH-SAA 423 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~--~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~-~~~ 423 (1149)
|+|+|+|++|++|+..|. .+. +||||+|.+++.+ .||++++++.||+|||+|.|.+.. ...
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~---------------~dPyv~v~~~~~~-~kT~~~~~t~~P~Wne~f~~~~~~~~~~ 64 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK---------------SDPYAILSVGAQR-FKTQTIPNTLNPKWNYWCEFPIFSAQNQ 64 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC---------------cCCeEEEEECCEE-EecceecCCcCCccCCcEEEEecCCCCC
Confidence 789999999999998887 555 8999999998876 499999999999999999999986 357
Q ss_pred EEEEEEEEccCC-CCcceeeEEEeceeecc---CCceeeeeeecCCC-CCCCCCCCcEEEEEEe
Q 001122 424 EVHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLNGS-GKPCKPGATLTLSIQY 482 (1149)
Q Consensus 424 ~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~---G~~~~~W~~L~~~~-gk~~~~~g~L~L~l~f 482 (1149)
.|.|+|||++.. ++++||++.|++.++.. ....+.||+|.+.. ++.....|+|+|++.+
T Consensus 65 ~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 65 LLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred EEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 999999999985 68999999999999873 34467999997653 2223456799998864
No 40
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.71 E-value=7.2e-17 Score=158.31 Aligned_cols=113 Identities=27% Similarity=0.400 Sum_probs=96.6
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeeeCCCCCeeceEEEEEccCC-CcEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~--~~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L 425 (1149)
|.|+|++|++|++.|..+. +||||+|.+.+ ....||++++++.||+|||+|.|.+... ...|
T Consensus 2 L~V~vi~a~~L~~~~~~~~---------------~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l 66 (119)
T cd04036 2 LTVRVLRATNITKGDLLST---------------PDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVL 66 (119)
T ss_pred eEEEEEEeeCCCccCCCCC---------------CCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEE
Confidence 7899999999998887665 89999999964 3446999999999999999999998755 3579
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEe
Q 001122 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 426 ~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f 482 (1149)
.|+|||+|..++++||++.+++.++..|...+.|++|.. ++ .|+|+|.+.+
T Consensus 67 ~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~~-----~g~l~~~~~~ 117 (119)
T cd04036 67 ELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNP-QG-----KEELEVEFLL 117 (119)
T ss_pred EEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCC-CC-----CceEEEEEEe
Confidence 999999998889999999999999999999999999953 22 2577777654
No 41
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=8.4e-17 Score=158.08 Aligned_cols=121 Identities=28% Similarity=0.450 Sum_probs=100.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-EEEeeeeeeeCCCCCeeceEEEEEccCCCcEE
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~-~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L 425 (1149)
|+|+|+|++|++|+..+..++ .+||||+|.+.+ ...+||++++++.||+|||+|.|.+......|
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~--------------~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l 67 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG--------------TVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPL 67 (124)
T ss_pred eEEEEEEEcccCCCcccccCC--------------CCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEE
Confidence 789999999999996654322 279999999998 46679999999999999999999998667899
Q ss_pred EEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeec
Q 001122 426 HFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 426 ~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p 484 (1149)
.|+|||++.. ++++||++.+++.++..+...+.|...+..+|++ .|+|+++|+|.|
T Consensus 68 ~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~---~G~i~~~l~~~p 124 (124)
T cd04044 68 NLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKP---VGELNYDLRFFP 124 (124)
T ss_pred EEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCcc---ceEEEEEEEeCC
Confidence 9999999885 6889999999999999776665444333456664 379999999986
No 42
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=1.4e-16 Score=157.17 Aligned_cols=117 Identities=26% Similarity=0.440 Sum_probs=99.6
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~~ 428 (1149)
|.|+|++|++|+++|..|+ +||||+|.+++..++||+++.++.||+|||.|.|.+.+....|.|+
T Consensus 2 l~v~vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~ 66 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS---------------SDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFY 66 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC---------------CCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEE
Confidence 8999999999999998776 8999999999887789999999999999999999998776899999
Q ss_pred EEEccCC-CCcceeeEEEeceeeccC-CceeeeeeecCCCCCCCCCCCcEEEEEE
Q 001122 429 VKDSDVV-GSELIGTVAIPVEQIYSG-GKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1149)
Q Consensus 429 V~D~D~~-~ddfIG~a~IpL~~L~~G-~~~~~W~~L~~~~gk~~~~~g~L~L~l~ 481 (1149)
|||++.. .+++||++.+++.++..+ ...+.|++|...++.. +..|+|+|.++
T Consensus 67 v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 67 VLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred EEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 9999985 589999999999988754 3478999996533221 23468888765
No 43
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.70 E-value=1.5e-16 Score=155.11 Aligned_cols=112 Identities=25% Similarity=0.340 Sum_probs=99.1
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC-CcEEEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L~~ 427 (1149)
|+|+|++|++|+.+|..+. +||||+|.+++.+ .||++++++.||+|||+|.|.+... ...|.|
T Consensus 2 ~~V~v~~a~~L~~~~~~~~---------------~dPyv~v~~~~~~-~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v 65 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGL---------------SDPYVKFRLGNEK-YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65 (116)
T ss_pred EEEEEEEEECCCCCCCCCC---------------CCcEEEEEECCEe-EecccccCCCCCceeEEEEEEecCCCCCEEEE
Confidence 7899999999998887765 8999999998876 4999999999999999999998766 578999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEee
Q 001122 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 428 ~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~ 483 (1149)
+|||++.. .+++||++.+++.++..+...+.|++|.+. .|+|++.+.|+
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 66 EVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred EEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 99999985 689999999999999988889999999532 36888888774
No 44
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.70 E-value=3.4e-17 Score=166.35 Aligned_cols=98 Identities=24% Similarity=0.472 Sum_probs=90.7
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCC
Q 001122 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1149)
Q Consensus 343 ~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~ 422 (1149)
.++.|.|+|+|++|.||...|+.++ +||||++.+++++. ||+++.+++||+|||+|.|.+.++.
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~s---------------SDPyVVl~lg~q~l-kT~~v~~n~NPeWNe~ltf~v~d~~ 65 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGS---------------SDPYVVLELGNQKL-KTRVVYKNLNPEWNEELTFTVKDPN 65 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccC---------------CCCeEEEEECCeee-eeeeecCCCCCcccceEEEEecCCC
Confidence 4578999999999999999998776 99999999999997 9999999999999999999999999
Q ss_pred cEEEEEEEEccC-CCCcceeeEEEeceeeccCCce
Q 001122 423 AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKV 456 (1149)
Q Consensus 423 ~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~ 456 (1149)
..|.++|||+|. +.|||||.|.|++..+..+...
T Consensus 66 ~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 66 TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred ceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 999999999999 5699999999999999976544
No 45
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=1.3e-16 Score=159.16 Aligned_cols=120 Identities=23% Similarity=0.406 Sum_probs=100.2
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE------EEeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA------VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~------~~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
+|+|+|++|++|+.+|..+. +||||+|.+.+. ...+|++++++.||+|||+|.|.+...
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~---------------~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~ 65 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA---------------SDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR 65 (133)
T ss_pred CEEEEEEEeECCCcccCCCC---------------cCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC
Confidence 48999999999999888776 899999999764 235999999999999999999998766
Q ss_pred CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCc------eeeeeeecCCCCCCCCCCCcEEEEEEee
Q 001122 422 AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK------VEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 422 ~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~------~~~W~~L~~~~gk~~~~~g~L~L~l~f~ 483 (1149)
...|.|+|||+|.. ++++||++.+++.++..+.. ...||+|....++ .+..|+|+|++.|.
T Consensus 66 ~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~G~l~~~~~~~ 133 (133)
T cd04033 66 EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-SRVKGHLRLYMAYL 133 (133)
T ss_pred CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-CcceeEEEEEEeeC
Confidence 67899999999985 58899999999999986532 4589999754322 23568999999984
No 46
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=9.8e-17 Score=158.18 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=85.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~------~~~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
.|+|+|++|++|+.++. |. +||||+|++.+ .+..||+++++++||+|||+|.|.+...
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~---------------~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~ 64 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM---------------FRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNE 64 (120)
T ss_pred CEEEEEEECcCCCcccC-CC---------------CCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCc
Confidence 38999999999998774 55 89999999832 2335899999999999999999998643
Q ss_pred ----CcEEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeeeec
Q 001122 422 ----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 ----~~~L~~~V~D~D~~~-ddfIG~a~IpL~~L~~G~~~~~W~~L~ 463 (1149)
...|.|+|+|+|..+ +++||++.||+.++..+...+.|++|.
T Consensus 65 ~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 65 DDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred CCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 257999999999754 889999999999999888889999994
No 47
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.69 E-value=2.1e-16 Score=155.78 Aligned_cols=118 Identities=22% Similarity=0.364 Sum_probs=98.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC-CcEEE
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVH 426 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L~ 426 (1149)
.|+|+|++|++|+.+|..+. +||||+|.+++... +|++++++.||+|||+|.|.+... ...|.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~---------------~DPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~ 64 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT---------------SDPFVRVFYNGQTL-ETSVVKKSCYPRWNEVFEFELMEGADSPLS 64 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC---------------cCceEEEEECCEEE-eceeecCCCCCccCcEEEEEcCCCCCCEEE
Confidence 38999999999998887765 89999999988764 999999999999999999999765 47899
Q ss_pred EEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCC---CCCCCCcEEEEEE
Q 001122 427 FFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK---PCKPGATLTLSIQ 481 (1149)
Q Consensus 427 ~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk---~~~~~g~L~L~l~ 481 (1149)
|+|||++.. .+++||++.+++.++..+...+.||.|.....+ ..+..|.|+|.|+
T Consensus 65 ~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 65 VEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred EEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 999999985 478999999999999877777899999753222 2235567777663
No 48
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3.1e-16 Score=155.62 Aligned_cols=117 Identities=33% Similarity=0.592 Sum_probs=102.3
Q ss_pred EEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC---CcEEEEEE
Q 001122 353 IYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFV 429 (1149)
Q Consensus 353 VieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~---~~~L~~~V 429 (1149)
|++|++|++ ..++ +||||+|.+.+.+. ||++++++.||+|||+|.|.+.+. ...|.|+|
T Consensus 2 vi~a~~L~~--~~g~---------------~Dpyv~v~~~~~~~-kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v 63 (127)
T cd08373 2 VVSLKNLPG--LKGK---------------GDRIAKVTFRGVKK-KTRVLENELNPVWNETFEWPLAGSPDPDESLEIVV 63 (127)
T ss_pred eEEeeCCcc--cCCC---------------CCCEEEEEECCEee-ecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEE
Confidence 789999987 5554 89999999988764 999999999999999999999754 57899999
Q ss_pred EEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeecccccc
Q 001122 430 KDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLS 489 (1149)
Q Consensus 430 ~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~~~d~ 489 (1149)
||++.. ++++||++.+++.++..+.....|++|.+.++++. +|+|+++++|.|.+.+.
T Consensus 64 ~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~--~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 64 KDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGRPT--GATISLEVSYQPPDGAV 122 (127)
T ss_pred EECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCCcc--cEEEEEEEEEeCCCCcc
Confidence 999985 57899999999999998888899999988777653 47999999999987754
No 49
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.68 E-value=5.7e-16 Score=153.83 Aligned_cols=121 Identities=18% Similarity=0.257 Sum_probs=101.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEE
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L 425 (1149)
++.|+|+|++|++|...|.+|. +||||+|.++++.. ||++++++.||+|||+|.|.+......|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~---------------~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~l 65 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG---------------ADPYVIIKCEGESV-RSPVQKDTLSPEFDTQAIFYRKKPRSPI 65 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC---------------cCccEEEEECCEEE-EeCccCCCCCCcccceEEEEecCCCCEE
Confidence 4679999999999998888776 89999999999875 9999999999999999999988777899
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCceeeeeeecCCCC-CCCCCCCcEEEEEEeec
Q 001122 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSG-KPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 426 ~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~g-k~~~~~g~L~L~l~f~p 484 (1149)
.|+|||++..+|++||.+.+++.++.. ....|++|..... ...+..|.|.|++.+.+
T Consensus 66 ~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 66 KIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 999999999889999999999987653 3457888853221 12235579999998765
No 50
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.67 E-value=2.1e-16 Score=156.34 Aligned_cols=101 Identities=25% Similarity=0.407 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEc-cC
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPV-AH 420 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v-~~ 420 (1149)
.|+|.|+|++|++|+.+| .+. +||||+|.+.. ...+||++++++.||+|||+|.|.+ ..
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~---------------~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~ 75 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSD---------------PDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPV 75 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCC---------------CCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCCh
Confidence 688999999999999988 665 89999999963 2235999999999999999999987 32
Q ss_pred ---CCcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeee
Q 001122 421 ---SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 421 ---~~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L 462 (1149)
....|.|+|||+|.. ++++||++.|+|.++..+...+.||+|
T Consensus 76 ~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 76 EDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred HHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 246899999999984 588999999999999988778899987
No 51
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.67 E-value=3.7e-16 Score=150.15 Aligned_cols=98 Identities=26% Similarity=0.509 Sum_probs=87.1
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC-CcEEEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L~~ 427 (1149)
|.|+|++|++|+..+..+. +||||+|.++++. .||++++++.||+|||+|.|.+.++ ...|.|
T Consensus 2 L~V~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~-~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v 65 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE---------------PSPYVELTVGKTT-QKSKVKERTNNPVWEEGFTFLVRNPENQELEI 65 (105)
T ss_pred EEEEEeeecCCCCcccCCC---------------CCcEEEEEECCEE-EeCccccCCCCCcccceEEEEeCCCCCCEEEE
Confidence 8899999999998876665 8999999999965 5999999999999999999999875 578999
Q ss_pred EEEEccCCCCcceeeEEEeceeeccC--CceeeeeeecC
Q 001122 428 FVKDSDVVGSELIGTVAIPVEQIYSG--GKVEGTYPVLN 464 (1149)
Q Consensus 428 ~V~D~D~~~ddfIG~a~IpL~~L~~G--~~~~~W~~L~~ 464 (1149)
+|+|++. +++||++.|+|.+|..+ ...+.||+|.+
T Consensus 66 ~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 66 EVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEECCC--CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 9999987 88999999999999864 35789999963
No 52
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.66 E-value=1.1e-15 Score=154.13 Aligned_cols=114 Identities=21% Similarity=0.358 Sum_probs=95.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC-CcEE
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L 425 (1149)
|.|.|+|++|++|+++|..|. +||||+|.+++.. .||++++++.||.|||+|.|.+.+. ...|
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~---------------~DPYv~v~~~~~~-~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l 78 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGK---------------SDPYCEVSMGSQE-HKTKVVSDTLNPKWNSSMQFFVKDLEQDVL 78 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCC---------------cCcEEEEEECCEe-eeccccCCCCCCccCceEEEEecCccCCEE
Confidence 789999999999999887776 8999999998876 4999999999999999999999765 4689
Q ss_pred EEEEEEccCC-CCcceeeEEEeceeecc-----CCceeeeeeecCCCCCCCCCCCcEEEEEEe
Q 001122 426 HFFVKDSDVV-GSELIGTVAIPVEQIYS-----GGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 426 ~~~V~D~D~~-~ddfIG~a~IpL~~L~~-----G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f 482 (1149)
.|+|||+|.. +|++||++.+++.++.. ......|+.|. ++ ..|+|+|+|.|
T Consensus 79 ~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~~---~~g~i~l~~~~ 135 (136)
T cd08375 79 CITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---EV---PTGEVVVKLDL 135 (136)
T ss_pred EEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---cc---cceeEEEEEEe
Confidence 9999999985 58899999999999985 23344566662 22 23699999887
No 53
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.66 E-value=4.2e-16 Score=151.05 Aligned_cols=100 Identities=25% Similarity=0.477 Sum_probs=87.6
Q ss_pred EEEEEEEeeCCCCCCC-CCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCee-ceEEEEEccCC---Cc
Q 001122 349 LDIWIYSAKNLPNMDM-FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVW-QQHFYVPVAHS---AA 423 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~-~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvW-NE~F~f~v~~~---~~ 423 (1149)
|+|+|++|++|+.++. .+. +||||+|.+++.+ +||++++++.||+| ||+|.|.+... ..
T Consensus 1 l~V~v~~a~~L~~~d~~~~~---------------~Dpyv~v~~~~~~-~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~ 64 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL---------------TDAFVEVKFGSTT-YKTDVVKKSLNPVWNSEWFRFEVDDEELQDE 64 (110)
T ss_pred CEEEEEEEECCCccccCCCC---------------CCceEEEEECCee-EecceecCCCCCcccCcEEEEEcChHHcCCC
Confidence 6899999999998874 444 8999999998855 59999999999999 99999998764 36
Q ss_pred EEEEEEEEccCC-CCcceeeEEEeceeecc---CCceeeeeeecC
Q 001122 424 EVHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLN 464 (1149)
Q Consensus 424 ~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~---G~~~~~W~~L~~ 464 (1149)
.|.|+|||+|.. ++++||++.+++.++.. +...++||+|++
T Consensus 65 ~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 65 PLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 899999999985 57899999999999986 456899999986
No 54
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.66 E-value=2.7e-16 Score=154.91 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=87.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEccC
Q 001122 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 345 l~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v~~ 420 (1149)
-+|.|.|+|++|+||+.++ .+. +||||+|.+.. ...+||++++++.||+|||+|.|.+.+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~---------------~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~ 73 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGT---------------CNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNE 73 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCC---------------CCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcCh
Confidence 4678999999999999888 555 89999999953 234599999999999999999999865
Q ss_pred C--CcEEEEEEEEccCC--CCcceeeEEEeceeeccCCceeeeeee
Q 001122 421 S--AAEVHFFVKDSDVV--GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 421 ~--~~~L~~~V~D~D~~--~ddfIG~a~IpL~~L~~G~~~~~W~~L 462 (1149)
. ...|.|+|||++.. ++++||.+.|++.++..|...++||.|
T Consensus 74 ~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 74 RDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred HHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 4 35788999999874 378999999999999988888999986
No 55
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=1.3e-15 Score=150.61 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=85.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEE
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~ 426 (1149)
|.|.|+|++|++|+.++ . .||||+|.+++.+. +|+++++ .||+|||+|.|.+......|.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~---------------~dPYV~Ik~g~~k~-kT~v~~~-~nP~WnE~F~F~~~~~~~~L~ 61 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---K---------------FNTYVTLKVQNVKS-TTIAVRG-SQPCWEQDFMFEINRLDLGLV 61 (127)
T ss_pred ceEEEEEEEeeCCCCCC---C---------------CCCeEEEEECCEEe-EeeECCC-CCCceeeEEEEEEcCCCCEEE
Confidence 57999999999997543 2 69999999999774 9999987 599999999999988777799
Q ss_pred EEEEEccCCCCcceeeEEEeceeeccCCce--eeeeeec
Q 001122 427 FFVKDSDVVGSELIGTVAIPVEQIYSGGKV--EGTYPVL 463 (1149)
Q Consensus 427 ~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~--~~W~~L~ 463 (1149)
|+|||+|.++|||||++.|+|.++..+... ..||+|.
T Consensus 62 v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 62 IELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred EEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999999999999999999999999976544 7899996
No 56
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.65 E-value=9.9e-16 Score=155.90 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=89.9
Q ss_pred eeceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeeeCCCCCeeceEEEEEc
Q 001122 344 LLHGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPV 418 (1149)
Q Consensus 344 Ll~GtL~VtVieAr~L~~~D-~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--~~--~~~rTkVi~nt~NPvWNE~F~f~v 418 (1149)
...|.|.|+|++|+||..++ ..|. +||||+|++. +. ...||+++++++||+|||+|.|.+
T Consensus 26 y~~~~L~V~Vi~ArnL~~~~~~~g~---------------sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v 90 (146)
T cd04028 26 DKKGQLEVEVIRARGLVQKPGSKVL---------------PAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDV 90 (146)
T ss_pred eCCCEEEEEEEEeeCCCcccCCCCC---------------cCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEE
Confidence 34689999999999998764 4454 8999999994 32 235999999999999999999999
Q ss_pred cCCCcEEEEEEE-EccC-CCCcceeeEEEeceeeccCCceeeeeeecCC
Q 001122 419 AHSAAEVHFFVK-DSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1149)
Q Consensus 419 ~~~~~~L~~~V~-D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~ 465 (1149)
......|.|+|| |++. .+++|||++.|+|+++..+.....||+|...
T Consensus 91 ~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 91 SPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred cCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 855678999999 5665 4588999999999999877778899999754
No 57
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.64 E-value=8.2e-16 Score=151.83 Aligned_cols=103 Identities=19% Similarity=0.331 Sum_probs=90.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEeeeeeeeCCCCCeeceEEEEEccCC--
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~-- 421 (1149)
.|.|.|+|++|++|+.+|..+. +||||+|.+ ++...+||++++++.||+|||+|.|.+...
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l 79 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT---------------ADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQEL 79 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC---------------CCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence 3689999999999998887776 899999999 444557999999999999999999998654
Q ss_pred -CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeec
Q 001122 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~ 463 (1149)
...|.|+|||+|.. ++++||++.|++.++..+...+.||+|.
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 36899999999985 5889999999999999777889999984
No 58
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.64 E-value=9.6e-16 Score=156.56 Aligned_cols=103 Identities=20% Similarity=0.339 Sum_probs=85.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEeeeeeeeCCCCCeeceEEEEEcc-----
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISNSEDPVWQQHFYVPVA----- 419 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~----~~~rTkVi~nt~NPvWNE~F~f~v~----- 419 (1149)
|.|+|++|++|.. ..|. +||||+|.+.+. ...||++++++.||+|||+|.|.+.
T Consensus 2 L~V~Vi~ArnL~~--~~g~---------------sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~ 64 (148)
T cd04010 2 LSVRVIECSDLAL--KNGT---------------CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSP 64 (148)
T ss_pred EEEEEEeCcCCCC--CCCC---------------CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEeccccc
Confidence 8999999999986 3444 899999999762 2349999999999999999999984
Q ss_pred ----------CC-CcEEEEEEEEccCC-CCcceeeEEEeceeeccC-CceeeeeeecCCCCC
Q 001122 420 ----------HS-AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG-GKVEGTYPVLNGSGK 468 (1149)
Q Consensus 420 ----------~~-~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G-~~~~~W~~L~~~~gk 468 (1149)
+. ...|.|+|||++.. .|+|||++.|++.+|..+ ...+.||+|..++.+
T Consensus 65 ~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~ 126 (148)
T cd04010 65 EKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEK 126 (148)
T ss_pred ccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccc
Confidence 11 25689999999974 688999999999999976 567899999766444
No 59
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.64 E-value=1.5e-15 Score=150.28 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=93.6
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~~ 428 (1149)
|+|+|++|++|+.++.++. +||||+|.+++...+||++++++.||+|||+|.|.+.. ...|.|+
T Consensus 2 l~v~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~ 65 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL---------------PDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQ 65 (123)
T ss_pred eEEEEEEecCCCccCCCCC---------------CCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEE
Confidence 7999999999998887776 89999999986656799999999999999999999975 6799999
Q ss_pred EEEccCCC---CcceeeEEEeceeeccCC-ceeeeeeecCCCCCC-CCCCCcEEEEE
Q 001122 429 VKDSDVVG---SELIGTVAIPVEQIYSGG-KVEGTYPVLNGSGKP-CKPGATLTLSI 480 (1149)
Q Consensus 429 V~D~D~~~---ddfIG~a~IpL~~L~~G~-~~~~W~~L~~~~gk~-~~~~g~L~L~l 480 (1149)
|||++..+ ++|||++.+++.+|.... ....|++|....... ....|+|.+++
T Consensus 66 V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 66 VFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999854 579999999999987443 346799996544321 11245666654
No 60
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.4e-15 Score=150.09 Aligned_cols=104 Identities=35% Similarity=0.593 Sum_probs=93.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEE
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~ 426 (1149)
|.|+|+|++|++|++.+..+. +||||+|.+++...++|++++++.||+|||+|.|++.+....|.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~ 65 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK---------------IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKIT 65 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC---------------cCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEE
Confidence 689999999999998887765 89999999988777899999999999999999999988778999
Q ss_pred EEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCC
Q 001122 427 FFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGS 466 (1149)
Q Consensus 427 ~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~ 466 (1149)
|+|+|++.. .+++||++.+++.++..+ ..+.||.|++.+
T Consensus 66 v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 66 LEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred EEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 999999985 477999999999999976 668999998765
No 61
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.64 E-value=7.5e-16 Score=150.81 Aligned_cols=99 Identities=11% Similarity=0.174 Sum_probs=82.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC---EEEeeeeeeeCCCCCeeceEEEEEccCC-
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~---~~~~rTkVi~nt~NPvWNE~F~f~v~~~- 421 (1149)
.|.|.|+|++|++|+ . .|+ +||||+|++.. ....+|+|+++|+||+|||+|.|.+...
T Consensus 13 ~~~L~V~vikA~~L~-~--~g~---------------sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~ 74 (118)
T cd08677 13 KAELHVNILEAENIS-V--DAG---------------CECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEE 74 (118)
T ss_pred CCEEEEEEEEecCCC-C--CCC---------------CCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHH
Confidence 478999999999998 2 344 89999999953 2345999999999999999999998754
Q ss_pred --CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeee
Q 001122 422 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 422 --~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L 462 (1149)
...|.|+|+|+|. +++++||++.+++.++..+...+.|..|
T Consensus 75 l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 75 SLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred hCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 3679999999999 4689999999999988666666778654
No 62
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.63 E-value=1.9e-15 Score=150.08 Aligned_cols=102 Identities=22% Similarity=0.363 Sum_probs=87.3
Q ss_pred ceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEccC
Q 001122 346 HGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v~~ 420 (1149)
.|+|.|+|++|+||+..|.. +. +||||+|.+.. ....||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~---------------~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 78 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKR---------------SNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISH 78 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCC---------------CCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCH
Confidence 46899999999999987653 43 89999999942 223599999999999999999999865
Q ss_pred C---CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeee
Q 001122 421 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 421 ~---~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L 462 (1149)
. ...|.|+|||+|. .++++||++.|++.++......+.||+|
T Consensus 79 ~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 79 SQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred HHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 3 3579999999998 4688999999999999988888999998
No 63
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.63 E-value=1.8e-15 Score=149.27 Aligned_cols=103 Identities=30% Similarity=0.354 Sum_probs=89.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeeeCCCCCeeceEEEEEccCC--
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~--~~~~rTkVi~nt~NPvWNE~F~f~v~~~-- 421 (1149)
.|+|.|+|++|++|+.+|..+. +||||+|.+.. .+..||++++++.||+|||+|.|.+...
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 79 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGT---------------SDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL 79 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCC---------------CCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHh
Confidence 4789999999999998887765 89999999853 3456999999999999999999998653
Q ss_pred -CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeec
Q 001122 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~ 463 (1149)
...|.|+|||+|.. ++++||++.|++.++..|...+.|++|.
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 36899999999985 5789999999999998888889999984
No 64
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.62 E-value=1.4e-15 Score=150.34 Aligned_cols=113 Identities=26% Similarity=0.429 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeee-CCCCCeeceEEEEEccCC-----
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHS----- 421 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~-nt~NPvWNE~F~f~v~~~----- 421 (1149)
+|+|+|++|++|+..+..+. +||||+|.+++....+|+++. ++.||+|||+|.|.+...
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~---------------~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~ 65 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK---------------MKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQG 65 (125)
T ss_pred CEEEEEEEcccCCCCCcccC---------------CceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccC
Confidence 58999999999998887665 899999999883345999986 489999999999999776
Q ss_pred CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCce-----eeeeeecCCCCCCCCCCCcEEE
Q 001122 422 AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKV-----EGTYPVLNGSGKPCKPGATLTL 478 (1149)
Q Consensus 422 ~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~-----~~W~~L~~~~gk~~~~~g~L~L 478 (1149)
...|.|+|+|++. .++++||++.|++.++..+... ..||+|..++|++. |.|++
T Consensus 66 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~---G~~~~ 125 (125)
T cd04051 66 RLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQ---GVLNF 125 (125)
T ss_pred ccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcC---eEEeC
Confidence 5789999999988 6688999999999999976543 68999998887753 57764
No 65
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.62 E-value=3.1e-16 Score=186.91 Aligned_cols=155 Identities=25% Similarity=0.324 Sum_probs=127.3
Q ss_pred cCCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece--------------
Q 001122 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1149)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~G-------------- 347 (1149)
..++-+|+-||.+++| +| |+|.|||||||.|+-+|+ +|||||++ |+....|.|..|
T Consensus 607 k~~~iefV~yNK~QlSRIY---PKgtRvdSSNymPqifWn----aGcQmVsLNfQT~dlaMQlN~g~FEyNG~sGYllKP 679 (1189)
T KOG1265|consen 607 KKSPIEFVNYNKRQLSRIY---PKGTRVDSSNYMPQIFWN----AGCQMVSLNFQTPDLAMQLNMGMFEYNGGSGYLLKP 679 (1189)
T ss_pred HhCchHHhhhhhHhhhccc---cCcccccccccchHHHHh----ccceEEEeeccCccHHHHhhhhheeecCCccceeCh
Confidence 3788999999999999 99 999999999999999999 99999999 999998877665
Q ss_pred ------------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEe
Q 001122 348 ------------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVG 397 (1149)
Q Consensus 348 ------------------------tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~------~~~~ 397 (1149)
||.|+||+|.=|..++ ..-||.|.+-| .+..
T Consensus 680 dfmRrpDr~fdPFse~~VdgvIA~t~sV~VISgqFLSdrk-------------------vgtyVEVdmfgLP~Dt~Rk~~ 740 (1189)
T KOG1265|consen 680 DFMRRPDRQFDPFSESPVDGVIAATLSVTVISGQFLSDRK-------------------VGTYVEVDMFGLPTDTIRKEF 740 (1189)
T ss_pred HHhhCCCcCcCCcccCcccceEEeeEEEEEEeeeeccccc-------------------cCceEEEEecCCCchhhhhhh
Confidence 7899999998887554 34599999854 1223
Q ss_pred eeeeeeC-CCCCeeceE-EEEE--ccCCCcEEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCC
Q 001122 398 RTFVISN-SEDPVWQQH-FYVP--VAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1149)
Q Consensus 398 rTkVi~n-t~NPvWNE~-F~f~--v~~~~~~L~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~ 471 (1149)
||+++.+ +.||+|||+ |.|. +-...+.|+|.|++. +..|||+--+||..|..|. +.+-|.+..+.+..
T Consensus 741 rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE---ggK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl~ 812 (1189)
T KOG1265|consen 741 RTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE---GGKFIGQRILPVDGLNAGY---RHVCLRSESNQPLT 812 (1189)
T ss_pred hhccccCCCCCcccccCCcccceecccchhheeeeeecc---CCceeeeeccchhcccCcc---eeEEecCCCCCccc
Confidence 8888765 999999984 7776 233347899999985 4789999999999999997 45778766666553
No 66
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.62 E-value=3.1e-15 Score=148.74 Aligned_cols=114 Identities=25% Similarity=0.397 Sum_probs=95.4
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEE
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1149)
.|+|+|++|++|+.+|..+. +||||+|.+++.. ++|+++.++.||+|||+|.|.+......|.|
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~---------------~DPyv~v~~~~~~-~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i 65 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT---------------SDPYVTVQVGKTK-KRTKTIPQNLNPVWNEKFHFECHNSSDRIKV 65 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC---------------cCcEEEEEECCEe-eecceecCCCCCccceEEEEEecCCCCEEEE
Confidence 58999999999999888776 8999999998765 5999999999999999999998766678999
Q ss_pred EEEEccC------------CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEE
Q 001122 428 FVKDSDV------------VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSI 480 (1149)
Q Consensus 428 ~V~D~D~------------~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l 480 (1149)
+|||+|. .++++||++.+++.++.. ..+.||.|....++. ...|+|.|+|
T Consensus 66 ~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 66 RVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred EEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCC-cEeEEEEEEC
Confidence 9999985 258899999999998753 357899997554432 3457887764
No 67
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.62 E-value=1.6e-15 Score=150.45 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=87.1
Q ss_pred eEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 347 GNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
+.|.|+|++|+||+.+|.. |. +||||+|.+.. ....||+|++++.||+|||+|.|.+...
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~---------------~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQR---------------SDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCC---------------CCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 5799999999999998875 54 89999999942 2235999999999999999999998643
Q ss_pred ---CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeec
Q 001122 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~ 463 (1149)
...|.|+|||+|.. ++++||++.|+|.++..+.....||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 36899999999984 5889999999999998777778999983
No 68
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.62 E-value=1.7e-15 Score=147.03 Aligned_cols=99 Identities=27% Similarity=0.391 Sum_probs=85.0
Q ss_pred eEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeeeCCCCCeeceEEEEEccCC--
Q 001122 347 GNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~~--~~~~rTkVi~nt~NPvWNE~F~f~v~~~-- 421 (1149)
|+|+|+|++|++|+.+|.. +. +||||+|.+.+ ....||++++++.||+|||+|.|.+...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~---------------~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~ 65 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS---------------SDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEV 65 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC---------------CCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhc
Confidence 7899999999999998876 65 89999999853 3456999999999999999999987643
Q ss_pred --CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeec
Q 001122 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~ 463 (1149)
...|.|+|||+|.. ++++||++.+++.+|.. ..+|+++.
T Consensus 66 ~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 66 KAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred cCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 46899999999985 58999999999999983 34788873
No 69
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=2.8e-15 Score=153.54 Aligned_cols=115 Identities=27% Similarity=0.397 Sum_probs=87.6
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccc-cCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccC--CCcE
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNS-QMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH--SAAE 424 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k-~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~--~~~~ 424 (1149)
+|.|+|++|++|+.+|..+.. +++.. .......+||||+|.+++++. ||++++++.||+|||+|.|++.. ....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~--~~~~~~~~~~~~~~DPYV~V~~~g~~~-kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMA--NVKKAFLGEKKELVDPYVEVSFAGQKV-KTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhc--cceeccccCCCCCcCcEEEEEECCEee-ecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 389999999999999865410 00000 001123489999999999886 99999999999999999999643 3578
Q ss_pred EEEEEEEccCC-CCcceeeEEEeceeeccCCc-------eeeeeeecCC
Q 001122 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK-------VEGTYPVLNG 465 (1149)
Q Consensus 425 L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~-------~~~W~~L~~~ 465 (1149)
|.|+|||+|.. +|++||++.|++.+|..... ...|+.|++.
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 99999999985 79999999999999886432 2456666543
No 70
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.61 E-value=8.1e-15 Score=147.31 Aligned_cols=118 Identities=21% Similarity=0.331 Sum_probs=96.1
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccC-------
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH------- 420 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~------- 420 (1149)
.|+|+|++|++|+.+|..|. +||||+|.+++.+ +||++++++.||+|||+|.|.+..
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~-~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~ 65 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL---------------SDPFARVSFLNQS-QETEVIKETLSPTWDQTLIFDEVELYGSPEE 65 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC---------------CCCEEEEEECCee-eEeeeEcCCCCCccCcEEEEeeeeccCChHH
Confidence 38999999999999998776 8999999998876 499999999999999999997432
Q ss_pred ---CCcEEEEEEEEccCC-CCcceeeEEE-eceeecc---CCceeeeeeecCCCCCCCCCCCcEEEEEEeecc
Q 001122 421 ---SAAEVHFFVKDSDVV-GSELIGTVAI-PVEQIYS---GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1149)
Q Consensus 421 ---~~~~L~~~V~D~D~~-~ddfIG~a~I-pL~~L~~---G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~ 485 (1149)
....|.|+|||+|.. .|++||++.+ ++..+.. +.....|++|. +.++ ..|+|.|.+.+.+.
T Consensus 66 ~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~~~~---~~Geil~~~~~~~~ 134 (135)
T cd04017 66 IAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-KGGQ---SAGELLAAFELIEV 134 (135)
T ss_pred hhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-cCCC---chhheeEEeEEEEe
Confidence 125799999999985 5789999987 5555553 35677999996 3343 34799999998875
No 71
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.61 E-value=8.5e-15 Score=144.77 Aligned_cols=113 Identities=23% Similarity=0.257 Sum_probs=94.6
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeeeCCCCCeeceEEEEEccCC-CcE
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAE 424 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~--~~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~ 424 (1149)
.|+|+|++|++|+.++..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+... ...
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~---------------~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~ 66 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL---------------SDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLW 66 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC---------------CCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCE
Confidence 48999999999998887765 89999999865 3557999999999999999999999874 578
Q ss_pred EEEEEEEccCC-CCcceeeEEEeceeecc---CCceeeeeeecCCCCCCCCCCCcEEEEEEee
Q 001122 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 425 L~~~V~D~D~~-~ddfIG~a~IpL~~L~~---G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~ 483 (1149)
|.|+|||++.. .+++||++.++|.++.. |...+.|++|. + .|+|+|.+.+.
T Consensus 67 L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-~-------~g~i~l~~~~~ 121 (126)
T cd04043 67 ISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-T-------QGRLLLRVSME 121 (126)
T ss_pred EEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-C-------CCeEEEEEEEe
Confidence 99999999985 58899999999987653 44667899994 2 25788887764
No 72
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.60 E-value=1.2e-14 Score=141.60 Aligned_cols=112 Identities=23% Similarity=0.418 Sum_probs=88.8
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC---CcEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEV 425 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~---~~~L 425 (1149)
|+|+|++|++|+.. +. +||||+|.+++.+.+||+++++ .||+|||+|.|.+... ...|
T Consensus 2 L~v~vi~a~~l~~~---~~---------------~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l 62 (117)
T cd08383 2 LRLRILEAKNLPSK---GT---------------RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTL 62 (117)
T ss_pred eEEEEEEecCCCcC---CC---------------CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEE
Confidence 88999999999865 44 8999999999977789999999 9999999999999763 3567
Q ss_pred EEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEe
Q 001122 426 HFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 426 ~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f 482 (1149)
.|.|+|.+.. .+.++|+ ++|..+..+...+.||+|...+++. +..|+|+|.++|
T Consensus 63 ~i~v~d~~~~~~~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 63 SFYNKDKRSKDRDIVIGK--VALSKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred EEEEEecccCCCeeEEEE--EEecCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 7888887754 3456665 4555555577789999998665543 346799999987
No 73
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.60 E-value=4.1e-15 Score=147.10 Aligned_cols=101 Identities=24% Similarity=0.357 Sum_probs=88.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEccCC-
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v~~~- 421 (1149)
+.|.|+|++|+||+.+|..+. +||||+|.+.. ...+||++++++.||+|||+|.|.+...
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI---------------PDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC---------------CCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 679999999999999987665 89999999953 3345999999999999999999998543
Q ss_pred --CcEEEEEEEEccCC---CCcceeeEEEeceeeccCCceeeeeee
Q 001122 422 --AAEVHFFVKDSDVV---GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 422 --~~~L~~~V~D~D~~---~ddfIG~a~IpL~~L~~G~~~~~W~~L 462 (1149)
...|.|+|||++.. .+++||++.|++.+|..+...++||+|
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 36899999999873 689999999999999888888999998
No 74
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.60 E-value=5.3e-15 Score=143.30 Aligned_cols=96 Identities=23% Similarity=0.358 Sum_probs=80.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC--CcE
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--AAE 424 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~--~~~ 424 (1149)
|.|.|+|++|++|+..|.... ....+||||+|++++... ||++++++.||+|||+|.|.+.+. ...
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~-----------~~~~~DPYv~v~~~~~~~-kT~v~~~t~nPvWne~f~f~v~~~~~~~~ 68 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR-----------TGFDMDPFVIISFGRRVF-RTSWRRHTLNPVFNERLAFEVYPHEKNFD 68 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC-----------CCCccCceEEEEECCEeE-eeeeecCCCCCcccceEEEEEeCccCCCE
Confidence 789999999999998774321 001279999999987664 999999999999999999998654 357
Q ss_pred EEEEEEEccCC-CCcceeeEEEeceeeccCC
Q 001122 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYSGG 454 (1149)
Q Consensus 425 L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~ 454 (1149)
|.|+|||+|.. .|++||++.++|.+|..+.
T Consensus 69 L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 69 IQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred EEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 99999999984 6899999999999998764
No 75
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.59 E-value=6.4e-15 Score=145.46 Aligned_cols=101 Identities=26% Similarity=0.489 Sum_probs=90.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeC-CCCCeeceEEEEEccCC----
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS---- 421 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~n-t~NPvWNE~F~f~v~~~---- 421 (1149)
|+|+|+|++|++|++++..+. +||||+|.+.+... +|+++.+ +.||+|||+|.|.+...
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~~-~T~~~~~~t~nP~Wne~f~f~v~~~~~~~ 64 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK---------------IDPYVIIQCRTQER-KSKVAKGDGRNPEWNEKFKFTVEYPGWGG 64 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC---------------cCceEEEEECCEee-eeeEcCCCCCCCcccceEEEEecCcccCC
Confidence 689999999999998887765 89999999988764 8888875 89999999999999876
Q ss_pred CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeec
Q 001122 422 AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 ~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~ 463 (1149)
...|.|+|+|++.. ++++||++.+++.++..+...+.|++|.
T Consensus 65 ~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 65 DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 47899999999885 6889999999999999887889999995
No 76
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=8.3e-15 Score=142.42 Aligned_cols=105 Identities=32% Similarity=0.448 Sum_probs=92.2
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC-CcEEEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L~~ 427 (1149)
|+|+|++|++|+..+..+. +||||+|.+.+...++|+++.++.||+|||+|.|.+... ...|.|
T Consensus 1 l~v~vi~a~~L~~~~~~~~---------------~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~ 65 (115)
T cd04040 1 LTVDVISAENLPSADRNGK---------------SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKV 65 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC---------------CCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEE
Confidence 5799999999998887665 899999999887667999999999999999999998764 578999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCC
Q 001122 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 468 (1149)
Q Consensus 428 ~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk 468 (1149)
+|||++.. ++++||++.+++.++..+...+.|++|....|.
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~ 107 (115)
T cd04040 66 EVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG 107 (115)
T ss_pred EEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence 99999985 588999999999999988888999999754443
No 77
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.59 E-value=6e-15 Score=145.38 Aligned_cols=100 Identities=22% Similarity=0.330 Sum_probs=84.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEccC--
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH-- 420 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v~~-- 420 (1149)
|.|.|+|++|++|+.++..+. +||||+|.+.+ ....||++++++.||+|||+|.|.+..
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSL---------------RNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCC---------------CCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 679999999999998887765 89999999964 234599999999999999999998644
Q ss_pred --CCcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeee
Q 001122 421 --SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 421 --~~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L 462 (1149)
....|.|+|||++.. ++++||++.++|.+... .....||+|
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 246899999999984 57899999999998433 334689998
No 78
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.59 E-value=7.7e-15 Score=144.88 Aligned_cols=102 Identities=23% Similarity=0.253 Sum_probs=87.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeeeCCCCCeeceEEEEEccCC---
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS--- 421 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--~~~~~rTkVi~nt~NPvWNE~F~f~v~~~--- 421 (1149)
++|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+...
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGT---------------SDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred CEEEEEEEEecCCCCccCCCC---------------CCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 579999999999998887776 8999999993 33446999999999999999999975322
Q ss_pred -CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeec
Q 001122 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~ 463 (1149)
...|.|+|||+|.. ++++||++.|++.++..+...+.|+.|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 35799999999975 5889999999999999888889999984
No 79
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.58 E-value=2.8e-15 Score=153.85 Aligned_cols=119 Identities=23% Similarity=0.340 Sum_probs=95.8
Q ss_pred ccCCCCCCCCCcccccCCCCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----
Q 001122 319 YAHSDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA---- 394 (1149)
Q Consensus 319 ~~~~~~~h~~g~q~Va~q~~~~~~~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~---- 394 (1149)
|.|....|...+-.|+ +.... .+.|.|+|++|++|.++|.+|. +||||+|.+...
T Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~-----~~~L~V~vi~a~~L~~~d~~g~---------------~DPyv~v~l~~~~~~~ 64 (153)
T cd08676 6 FGVSPEEHEALLERVR-EAEPP-----IFVLKVTVIEAKGLLAKDVNGF---------------SDPYCMLGIVPASRER 64 (153)
T ss_pred hCCCHHHHHHHHHHHH-hcCCC-----eEEEEEEEEeccCCcccCCCCC---------------CCceEEEEEccccccc
Confidence 4555566665554555 33322 2479999999999999998886 899999998531
Q ss_pred ------------------------EEeeeeeeeCCCCCeeceEEEEEccCC-CcEEEEEEEEccCCCCcceeeEEEecee
Q 001122 395 ------------------------VVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQ 449 (1149)
Q Consensus 395 ------------------------~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L~~~V~D~D~~~ddfIG~a~IpL~~ 449 (1149)
.+++|++++++.||+|||+|.|.+... ...|.|+|||++ +++||++.|++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~ 141 (153)
T cd08676 65 NSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKD 141 (153)
T ss_pred ccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHH
Confidence 246999999999999999999999764 478999999998 8999999999999
Q ss_pred eccCCceeeeeee
Q 001122 450 IYSGGKVEGTYPV 462 (1149)
Q Consensus 450 L~~G~~~~~W~~L 462 (1149)
|.. ...+.||+|
T Consensus 142 l~~-~~~d~W~~L 153 (153)
T cd08676 142 LPS-CGLDSWFKL 153 (153)
T ss_pred hCC-CCCCCeEeC
Confidence 984 457999987
No 80
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.58 E-value=6.3e-15 Score=147.06 Aligned_cols=102 Identities=23% Similarity=0.280 Sum_probs=85.8
Q ss_pred ceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEccC
Q 001122 346 HGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v~~ 420 (1149)
.+.|.|+|++|+||+.+|.. |. +||||+|.+.. ....||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~---------------~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~ 78 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK---------------CHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA 78 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC---------------CCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH
Confidence 36899999999999988864 54 89999999842 223499999999999999999999865
Q ss_pred C---CcEEEEEEEEccC-CCCcceeeEEEeceeecc---CCceeeeeee
Q 001122 421 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYS---GGKVEGTYPV 462 (1149)
Q Consensus 421 ~---~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~---G~~~~~W~~L 462 (1149)
. ...|.|.|||.+. .++++||++.|+|.++.. +.....||+|
T Consensus 79 ~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 79 DLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred HHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 4 3689999999997 568899999999999864 3467899998
No 81
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=9e-15 Score=142.09 Aligned_cols=98 Identities=19% Similarity=0.358 Sum_probs=85.4
Q ss_pred CCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC-CcEEEEEEEEccCCCCcceeeEEEeceeecc-CCceeee
Q 001122 382 TSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYS-GGKVEGT 459 (1149)
Q Consensus 382 ~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L~~~V~D~D~~~ddfIG~a~IpL~~L~~-G~~~~~W 459 (1149)
.+||||+|.++++..++|++++++.||+|||+|.|.+.+. ...|.|+|+|++..++++||++.++|.++.. +...+.|
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w 91 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQW 91 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcccee
Confidence 3899999999987778999999999999999999999875 4779999999998889999999999999864 4556899
Q ss_pred eeecCCCCCCCCCCCcEEEEEEeecc
Q 001122 460 YPVLNGSGKPCKPGATLTLSIQYTPM 485 (1149)
Q Consensus 460 ~~L~~~~gk~~~~~g~L~L~l~f~p~ 485 (1149)
|+|.+ + ..|+|+++++|+|+
T Consensus 92 ~~L~~---~---~~G~i~~~~~~~p~ 111 (111)
T cd04052 92 FPLSG---N---GQGRIRISALWKPV 111 (111)
T ss_pred EECCC---C---CCCEEEEEEEEecC
Confidence 99964 2 24799999999985
No 82
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.58 E-value=9.1e-15 Score=143.71 Aligned_cols=102 Identities=24% Similarity=0.415 Sum_probs=87.0
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeeeCCCCCeeceEEEEEccC
Q 001122 346 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D-~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~--~--~~~rTkVi~nt~NPvWNE~F~f~v~~ 420 (1149)
.|.|.|+|++|++|+.++ ..+. +||||+|.+.. . ..+||++++++.||+|||+|.|.+..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~ 77 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKR---------------SNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISK 77 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCC---------------CCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCH
Confidence 368999999999999887 5554 89999999842 1 34699999999999999999999865
Q ss_pred C---CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeee
Q 001122 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 421 ~---~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L 462 (1149)
. ...|.|+|||++.. .+++||++.+++.++..+...+.||+|
T Consensus 78 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 78 SQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred HHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 3 46899999999974 578999999999999878788999987
No 83
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.57 E-value=1.7e-14 Score=139.88 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=83.8
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC-----C
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-----A 422 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~-----~ 422 (1149)
.|+|+|++|++|+ .+. +||||+|.+++++. ||++++++.||+|||+|.|.+..+ .
T Consensus 5 ~l~V~v~~a~~L~----~~~---------------~dpyv~v~~~~~~~-kT~~~~~t~nP~wne~f~f~~~~~~~~l~~ 64 (111)
T cd04011 5 QVRVRVIEARQLV----GGN---------------IDPVVKVEVGGQKK-YTSVKKGTNCPFYNEYFFFNFHESPDELFD 64 (111)
T ss_pred EEEEEEEEcccCC----CCC---------------CCCEEEEEECCEee-eeeEEeccCCCccccEEEEecCCCHHHHhc
Confidence 4899999999998 343 89999999998874 999999999999999999997654 2
Q ss_pred cEEEEEEEEccCC-CCcceeeEEEeceeeccC---CceeeeeeecC
Q 001122 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG---GKVEGTYPVLN 464 (1149)
Q Consensus 423 ~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G---~~~~~W~~L~~ 464 (1149)
..|.|+|+|++.. ++++||++.|+++++..+ ...+.|++|.+
T Consensus 65 ~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 65 KIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 5799999999985 589999999999999866 44688999964
No 84
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.57 E-value=6.7e-15 Score=147.11 Aligned_cols=108 Identities=22% Similarity=0.342 Sum_probs=91.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
.|.|.|+|++|++|+.+|..+. +||||+|.+.. ....||++++++.||+|||+|.|.+...
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~---------------~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 76 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGY---------------SDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS 76 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCC---------------CCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHH
Confidence 3689999999999999888776 89999999953 2345999999999999999999998654
Q ss_pred ---CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCCCC
Q 001122 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~ 470 (1149)
...|.|+|||+|.. .+++||++.|++.+ .|...+.|++++...+++.
T Consensus 77 ~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~ 127 (133)
T cd08384 77 DLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKI 127 (133)
T ss_pred HhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCCh
Confidence 36799999999974 57899999999985 4666789999987766654
No 85
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.56 E-value=1.2e-14 Score=144.32 Aligned_cols=102 Identities=21% Similarity=0.304 Sum_probs=85.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--C---EEEeeeeeeeCCCCCeeceEEEEEccC
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--G---AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--~---~~~~rTkVi~nt~NPvWNE~F~f~v~~ 420 (1149)
.+.|.|+|++|+||+.++..+. +||||+|.+- . ....||++++++.||+|||+|.|++..
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~---------------~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~ 77 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPEN---------------SKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISS 77 (124)
T ss_pred CCEEEEEEeEecCCcccccCCC---------------CCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCH
Confidence 3579999999999998876665 8999999984 2 224699999999999999999999875
Q ss_pred C---CcEEEEEEEEccCC-CCcceeeEEEeceeecc-CCceeeeeee
Q 001122 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYS-GGKVEGTYPV 462 (1149)
Q Consensus 421 ~---~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~-G~~~~~W~~L 462 (1149)
. ...|.|+|||++.. .+++||++.|++.++.. +.....||+|
T Consensus 78 ~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 78 TKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred HHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 4 47899999999984 58899999999999954 4457789976
No 86
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.56 E-value=3.3e-14 Score=145.95 Aligned_cols=118 Identities=17% Similarity=0.321 Sum_probs=92.8
Q ss_pred EEEEEEEeeC--CCCCCCCCccccccccccCCCCCCCCcEEEEEE----CCEEEeeeeeeeCCCCCeeceEEEEEccCC-
Q 001122 349 LDIWIYSAKN--LPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV----AGAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 349 L~VtVieAr~--L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l----~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~- 421 (1149)
++++|..|++ |+..+..+. +||||++++ .+....||+|+++|.||+|||+|.|.+...
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~---------------~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~ 68 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKD---------------LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKH 68 (155)
T ss_pred eEEEEEEeeccccCCCcCCCC---------------CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEecccc
Confidence 4556666666 665555444 899999998 344446999999999999999999998654
Q ss_pred --------CcEEEEEEEEccCC--CCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeec
Q 001122 422 --------AAEVHFFVKDSDVV--GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 422 --------~~~L~~~V~D~D~~--~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p 484 (1149)
...|.|+|||++.+ +|++||++.|+|+.+........|++|++ ..|+ .||+|+|+++...
T Consensus 69 ~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~--~Gg~l~v~ir~r~ 138 (155)
T cd08690 69 RSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKA--TGGKLEVKVRLRE 138 (155)
T ss_pred chhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCC--cCCEEEEEEEecC
Confidence 24699999999974 69999999999999987767778999974 3343 4689999999754
No 87
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.54 E-value=3.1e-14 Score=140.03 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=87.9
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeeeCCCCCeeceEEEEEccCC-
Q 001122 346 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D-~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--~~~~~rTkVi~nt~NPvWNE~F~f~v~~~- 421 (1149)
.+.|.|+|++|++|+.++ ..+. +||||+|.+. +...++|++++++.||+|||+|.|.+...
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~---------------~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~ 77 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH---------------CDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKE 77 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC---------------CCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHH
Confidence 357999999999999887 4554 8999999983 33456999999999999999999998653
Q ss_pred --CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeec
Q 001122 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~ 463 (1149)
...|.|+|||++.. .+++||++.|+|.++......+.|++|.
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 35799999999985 4789999999999999887788999984
No 88
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.54 E-value=3.3e-14 Score=141.81 Aligned_cols=102 Identities=25% Similarity=0.354 Sum_probs=83.6
Q ss_pred eEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeeeCCCCCeeceEEEEE-ccCC-
Q 001122 347 GNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVP-VAHS- 421 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~--~~~~~rTkVi~nt~NPvWNE~F~f~-v~~~- 421 (1149)
++|.|+|++|++|+.++.. +. +||||+|.+. +....||++++++.||+|||+|.|. +...
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~---------------~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGT---------------SDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCC---------------cCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 5799999999999988865 44 8999999985 2334599999999999999999994 4322
Q ss_pred --CcEEEEEEEEccCC-CCcceeeEEEeceeeccC--Cceeeeeeec
Q 001122 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG--GKVEGTYPVL 463 (1149)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G--~~~~~W~~L~ 463 (1149)
...|.|+|||+|.. ++++||++.|+|.++..+ .....|++|.
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 35799999999874 688999999999998644 5677888873
No 89
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.54 E-value=8.2e-14 Score=137.61 Aligned_cols=116 Identities=29% Similarity=0.501 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCC--CCCccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeeeCCC-CCeeceEEEEEcc
Q 001122 348 NLDIWIYSAKNLPNMD--MFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSE-DPVWQQHFYVPVA 419 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D--~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~-----~~~~rTkVi~nt~-NPvWNE~F~f~v~ 419 (1149)
.|+|+|++|++|+.++ ..+. .||||+|++.+ ....||+++.++. ||+|||+|.|.+.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~ 67 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI---------------VDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT 67 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc---------------cCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe
Confidence 4899999999999877 3444 89999999942 2235999988865 9999999999987
Q ss_pred CCC-cEEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEe
Q 001122 420 HSA-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 420 ~~~-~~L~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f 482 (1149)
... ..|.|+|+|++..++++||++.+++.+|..|. .|++|.+.+|+.. ..|.|.+++++
T Consensus 68 ~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~-~~~~l~v~~~~ 127 (128)
T cd00275 68 VPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPL-ELSTLFVHIDI 127 (128)
T ss_pred CCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCCC-cceeEEEEEEE
Confidence 554 67999999999888899999999999997663 7899998888743 35788888876
No 90
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.54 E-value=2.1e-14 Score=144.27 Aligned_cols=108 Identities=27% Similarity=0.402 Sum_probs=90.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEE--EeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAV--VGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--~~~--~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
.+.|.|+|++|++|+.+|..|. +||||+|.+. +.+ ..||+|++++.||+|||+|.|.+...
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~---------------~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~ 78 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGL---------------ADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSE 78 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC---------------CCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHH
Confidence 4579999999999999888776 8999999984 332 35899999999999999999998643
Q ss_pred ---CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCCCC
Q 001122 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~ 470 (1149)
...|.|+|||+|.. ++++||++.|++.. .+...+.|++|.+..|++.
T Consensus 79 ~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 79 ELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee
Confidence 35789999999985 58899999999998 4666789999987777754
No 91
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.53 E-value=1.5e-14 Score=146.21 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=90.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~--~--~~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
.|.|.|+|++|+||..+|..+. .++||||+|.+.. . ..+||++++++.||+|||+|.|.+.+.
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~-------------~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLL-------------LGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC-------------CCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 4789999999999998884311 0189999999854 2 234999999999999999999998754
Q ss_pred ---CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCCCCC
Q 001122 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~ 471 (1149)
...|.|+|+|+|.. ++++||++.|++.. .|...+.|..++...+++..
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~va 132 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQIA 132 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCchh
Confidence 36799999999984 58899999999974 67778899999877777643
No 92
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.53 E-value=1.9e-14 Score=145.05 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=89.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEE--EeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAV--VGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--~~~--~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
.+.|.|+|++|+||+.+|..+. +||||+|.+. +.+ ..||+|++++.||+|||+|.|.+...
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~---------------~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~ 78 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT---------------ADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI 78 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC---------------CCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence 3579999999999998887665 8999999993 222 34899999999999999999998653
Q ss_pred ---CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCC
Q 001122 422 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~ 470 (1149)
...|.|+|+|+|. .++++||++.|+... .|...+.|..++...+++.
T Consensus 79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~~~~v 129 (136)
T cd08406 79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLASLRKPV 129 (136)
T ss_pred HhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHCCCCee
Confidence 4679999999997 568999999998763 5677789999987766654
No 93
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.53 E-value=2e-14 Score=143.98 Aligned_cols=108 Identities=31% Similarity=0.414 Sum_probs=90.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--~~--~~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
+|+|+|+|++|++|+.+|..|. +||||+|.+. +. ..+||++++++.||+|||+|.|.+...
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~---------------~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~ 77 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGF---------------SDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE 77 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCC---------------CCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHH
Confidence 5789999999999999988776 8999999984 32 245999999999999999999998543
Q ss_pred C---cEEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeeeecCCCCCCC
Q 001122 422 A---AEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 422 ~---~~L~~~V~D~D~~~-ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~ 470 (1149)
. ..|.|+|||+|..+ +++||++.|++. ..|...+.|++++...|++.
T Consensus 78 ~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 78 NVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPI 128 (134)
T ss_pred HhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCee
Confidence 2 46999999999855 899999999987 33555689999998877754
No 94
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.53 E-value=4.4e-14 Score=142.64 Aligned_cols=101 Identities=19% Similarity=0.379 Sum_probs=86.9
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC---EEEeeeeeeeCCCCCeeceEEEEEccCC----
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---AVVGRTFVISNSEDPVWQQHFYVPVAHS---- 421 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~---~~~~rTkVi~nt~NPvWNE~F~f~v~~~---- 421 (1149)
|.|+|++|++|+.+ ..+. +||||+|.+.. ...+||+++.++.||+|||+|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~---------------~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~ 64 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT---------------CDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYE 64 (137)
T ss_pred CEEEEEEccCCCcc-cCCC---------------CCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccc
Confidence 67999999999877 5554 89999999983 3446999999999999999999998654
Q ss_pred ------------CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCC
Q 001122 422 ------------AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1149)
Q Consensus 422 ------------~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~ 465 (1149)
...|.|+|||++.. +++|||++.|++.++..+.....||+|...
T Consensus 65 ~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 65 KKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred ccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 35799999999986 689999999999999877778899999644
No 95
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.53 E-value=4.1e-14 Score=140.34 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=85.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeeeCCCCCeeceEEEEE-ccCC--
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVP-VAHS-- 421 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--~~~~~rTkVi~nt~NPvWNE~F~f~-v~~~-- 421 (1149)
+.|.|+|++|+||+.++..+. +||||++.+. +....||+|+++ .||+|||+|.|+ +...
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~---------------~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGA---------------SSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred CEEEEEEEEecCCCchhcCCC---------------CCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 479999999999998887665 8999998873 233459999888 999999999998 5432
Q ss_pred -CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeec
Q 001122 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~ 463 (1149)
...|.|+|+|++.. ++++||++.|+|.++..+.....|++|.
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 46799999999974 4889999999999998888889999984
No 96
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.52 E-value=3.7e-14 Score=147.13 Aligned_cols=103 Identities=25% Similarity=0.369 Sum_probs=85.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeeeCCCCCeeceEEEEEccC
Q 001122 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 345 l~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~----~~~~~rTkVi~nt~NPvWNE~F~f~v~~ 420 (1149)
..|+|.|+|++|++|+.+|..+. +||||+|.+. +...+||+|++++.||+|||+|.|.+..
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~---------------~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~ 89 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT---------------SDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVS 89 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC---------------CCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCC
Confidence 45889999999999998887665 8999999983 2334699999999999999999998532
Q ss_pred C----CcEEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeeee
Q 001122 421 S----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 421 ~----~~~L~~~V~D~D~~~-ddfIG~a~IpL~~L~~G~~~~~W~~L 462 (1149)
. ...|.|+|||+|..+ +++||++.+++.++..-...+.|+.|
T Consensus 90 ~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 90 PEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred HHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 2 257999999999855 89999999999998754445667766
No 97
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.52 E-value=2.1e-14 Score=144.30 Aligned_cols=109 Identities=27% Similarity=0.394 Sum_probs=90.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeeeCCCCCeeceEEEEEccC
Q 001122 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 345 l~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--~~--~~~rTkVi~nt~NPvWNE~F~f~v~~ 420 (1149)
..|+|+|+|++|++|+.+|..+. +||||+|.+. +. ..++|++++++.||+|||+|.|.+..
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 77 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL---------------SDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPF 77 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC---------------CCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCH
Confidence 34789999999999998887776 8999999994 22 33589999999999999999999864
Q ss_pred CC---cEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCCCC
Q 001122 421 SA---AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 421 ~~---~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~ 470 (1149)
.. ..|.|+|||+|.. ++++||++.|++... |...+.|++|+...+++.
T Consensus 78 ~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 78 EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRPI 129 (136)
T ss_pred HHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCee
Confidence 42 4799999999985 578999999999753 667789999987766643
No 98
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.52 E-value=4.7e-14 Score=140.59 Aligned_cols=88 Identities=28% Similarity=0.397 Sum_probs=76.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccC--CCcE
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH--SAAE 424 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~--~~~~ 424 (1149)
|+|+|+|++|++|+ .+..+. +||||+|.+++.+ +||++++++.||+|||+|.|.... ....
T Consensus 28 ~~L~V~V~~A~~L~-~d~~g~---------------~DPYVkV~~~~~~-~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~ 90 (127)
T cd04032 28 ATLTVTVLRATGLW-GDYFTS---------------TDGYVKVFFGGQE-KRTEVIWNNNNPRWNATFDFGSVELSPGGK 90 (127)
T ss_pred EEEEEEEEECCCCC-cCcCCC---------------CCeEEEEEECCcc-ccCceecCCCCCcCCCEEEEecccCCCCCE
Confidence 68999999999998 465554 8999999998874 599999999999999999997533 3579
Q ss_pred EEEEEEEccCC-CCcceeeEEEeceeec
Q 001122 425 VHFFVKDSDVV-GSELIGTVAIPVEQIY 451 (1149)
Q Consensus 425 L~~~V~D~D~~-~ddfIG~a~IpL~~L~ 451 (1149)
|.|+|||+|.. +|++||++.++|....
T Consensus 91 L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 91 LRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 99999999985 7899999999998655
No 99
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.51 E-value=3.2e-14 Score=142.90 Aligned_cols=108 Identities=22% Similarity=0.354 Sum_probs=90.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--~~--~~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
.|+|.|+|++|++|+.++..+. +||||+|.+. +. ...||++++++.||+|||+|.|.+...
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~---------------~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~ 78 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGT---------------SDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE 78 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC---------------CCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH
Confidence 4789999999999998887776 8999999983 22 235899999999999999999997532
Q ss_pred ---CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCCCCCC
Q 001122 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~ 470 (1149)
...|.|+|+|++.. .+++||++.|++.+. |...+.|++|+...+++.
T Consensus 79 ~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~ 129 (136)
T cd08405 79 RLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPV 129 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCch
Confidence 35799999999985 578999999999876 666789999987777754
No 100
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.51 E-value=7.6e-14 Score=142.23 Aligned_cols=93 Identities=27% Similarity=0.474 Sum_probs=83.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEE
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~ 426 (1149)
|.|+|+|++|++|+..|. +. +||||+|.+++++ .||++++++.||+|||+|.|.+.++...|.
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~---------------sDPYV~v~~g~~~-~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~ 64 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS---------------SDPYVVLTLGNQK-VKTRVIKKNLNPVWNEELTLSVPNPMAPLK 64 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC---------------cCcEEEEEECCEE-EEeeeEcCCCCCeecccEEEEecCCCCEEE
Confidence 789999999999998776 44 8999999998876 599999999999999999999988888999
Q ss_pred EEEEEccCC-CCcceeeEEEeceeeccCCce
Q 001122 427 FFVKDSDVV-GSELIGTVAIPVEQIYSGGKV 456 (1149)
Q Consensus 427 ~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~ 456 (1149)
|+|||+|.. .|++||++.+++.++......
T Consensus 65 ~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 65 LEVFDKDTFSKDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhhhhhh
Confidence 999999985 588999999999999865433
No 101
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.51 E-value=8.1e-14 Score=138.92 Aligned_cols=107 Identities=26% Similarity=0.405 Sum_probs=91.0
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEcc
Q 001122 344 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVA 419 (1149)
Q Consensus 344 Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v~ 419 (1149)
+..|+|.|+|++|++|+..+..+. +||||+|.+.+ ...+||++++++.||.|||+|.|.+.
T Consensus 10 ~~~~~l~v~i~~a~nL~~~~~~~~---------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~ 74 (131)
T cd04026 10 VKDNKLTVEVREAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74 (131)
T ss_pred ECCCEEEEEEEEeeCCCCcCCCCC---------------CCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCC
Confidence 345789999999999998876665 89999999963 34569999999999999999999987
Q ss_pred CC--CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeecCCC
Q 001122 420 HS--AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGS 466 (1149)
Q Consensus 420 ~~--~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~ 466 (1149)
.. ...|.|+|||++.. ++++||++.+++.++... ..+.||+|.+.+
T Consensus 75 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 75 PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred chhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 54 46899999999874 588999999999999854 678999998653
No 102
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.50 E-value=2.2e-13 Score=141.78 Aligned_cols=144 Identities=22% Similarity=0.248 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCccccccccccccccc
Q 001122 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1149)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t 624 (1149)
+.++.++++|.+|+++|+|+.|.|.+.. ......|.+.|++++++||+|+||+++.......
T Consensus 21 ~~~~~i~~~I~~A~~~I~i~~~~~~~~~-------~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~----------- 82 (176)
T cd00138 21 SDLDALLEAISNAKKSIYIASFYLSPLI-------TEYGPVILDALLAAARRGVKVRILVDEWSNTDLK----------- 82 (176)
T ss_pred hHHHHHHHHHHhhheEEEEEEeEecccc-------cccchHHHHHHHHHHHCCCEEEEEEcccccCCch-----------
Confidence 6799999999999999999999765422 0135789999999999999999998544321100
Q ss_pred ccHHHHHHhhc---CCcEEEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCCCC
Q 001122 625 HDEETRRVFKH---SSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPH 701 (1149)
Q Consensus 625 ~~~~t~~~l~~---~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~ 701 (1149)
........++. .++++...+.... ...++|+|++|||++ ++++||.|+...+|.
T Consensus 83 ~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~~~--- 139 (176)
T cd00138 83 ISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRSLT--- 139 (176)
T ss_pred HHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhhhh---
Confidence 01122333443 3788766543210 235899999999996 999999999997552
Q ss_pred CCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCH--HHHHHHHHHHHHHHhh
Q 001122 702 HPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP--AAYDVLTNFEERWRKA 759 (1149)
Q Consensus 702 H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GP--aa~Dl~~~F~qrWn~a 759 (1149)
.++|+.+.+++| +|.++.+.|.+.|+..
T Consensus 140 ------------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 140 ------------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred ------------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 357999999999 7999999999999964
No 103
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.50 E-value=3.5e-14 Score=141.35 Aligned_cols=107 Identities=27% Similarity=0.383 Sum_probs=92.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEeeeeeeeCCCCCeeceEEEEEccCC-
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~----~~~rTkVi~nt~NPvWNE~F~f~v~~~- 421 (1149)
++|.|+|++|++|+..+..+. +||||+|.+.+. ..++|+++.++.||+|||+|.|.+...
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~ 78 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGL---------------SDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ 78 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCC---------------CCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence 689999999999998886665 899999998542 345999999999999999999998765
Q ss_pred --CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCC
Q 001122 422 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 422 --~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~ 470 (1149)
...|.|+|+|.+. .++++||++.+++.+ .|...+.|++|++..+++.
T Consensus 79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPI 128 (134)
T ss_pred hCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCce
Confidence 3689999999998 568899999999999 6777899999998777653
No 104
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.49 E-value=4.7e-14 Score=141.88 Aligned_cols=109 Identities=25% Similarity=0.361 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC-C-E--EEeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA-G-A--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~-~-~--~~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
.|.|.|+|++|++|+.+|..|. +||||+|.+. + . ..++|++++++.||+|||+|.|.+...
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~---------------~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~ 77 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQG---------------SDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQE 77 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCC---------------CCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHH
Confidence 3789999999999999988776 8999999983 2 1 235999999999999999999998543
Q ss_pred ---CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCC
Q 001122 422 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~ 470 (1149)
...|.|+|+|+|. .++++||++.|...... +...+.|+.|++..+++.
T Consensus 78 ~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~~ 129 (135)
T cd08410 78 ELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTAV 129 (135)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCEe
Confidence 2469999999997 56899999987653332 234689999998877754
No 105
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.48 E-value=1.3e-14 Score=162.92 Aligned_cols=103 Identities=27% Similarity=0.413 Sum_probs=90.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeeeCCCCCeeceEEEEEccCC-
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~----~~~~~rTkVi~nt~NPvWNE~F~f~v~~~- 421 (1149)
..|+|+|.+|+||.+||.+|. +||||++.+- +...+||++|+.++||+|||+|.|.+...
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGl---------------SDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~D 244 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSD 244 (683)
T ss_pred ceEEEEehhhccccccCCCCC---------------CCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEeccccc
Confidence 469999999999999999997 9999999983 23345999999999999999999998644
Q ss_pred -CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCC
Q 001122 422 -AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1149)
Q Consensus 422 -~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~ 465 (1149)
...|.|+|||||. +.+||+|...+.+++|.. ..+++||.|++.
T Consensus 245 kdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLsq 289 (683)
T KOG0696|consen 245 KDRRLSIEVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLSQ 289 (683)
T ss_pred ccceeEEEEecccccccccccceecccHHHHhh-cchhhHHHHhhh
Confidence 4789999999998 679999999999999984 467899999875
No 106
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.48 E-value=9.5e-14 Score=139.15 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=85.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeeeCCC-CCeeceEEEEEccC
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--G--AVVGRTFVISNSE-DPVWQQHFYVPVAH 420 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--~--~~~~rTkVi~nt~-NPvWNE~F~f~v~~ 420 (1149)
.|+|+|+|++|+||++++..+. +||||+|++- + ...+||+++++|. ||+|||+|.|.+..
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~---------------~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~ 77 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLT---------------LSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQ 77 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCC---------------CCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCc
Confidence 4689999999999997643332 7999999984 2 2335999999985 69999999999976
Q ss_pred CC--cEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCC
Q 001122 421 SA--AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 421 ~~--~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~ 470 (1149)
.. ..|.|+|+|+|. .++++||++.++..+. .+...+.|.+++...+++.
T Consensus 78 ~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 78 QEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred hhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 53 356777888876 4689999999999864 3455789999987667654
No 107
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.48 E-value=1.1e-13 Score=138.72 Aligned_cols=91 Identities=27% Similarity=0.415 Sum_probs=79.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeeeCCCCCeeceEEEEEccC
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~------~~~~rTkVi~nt~NPvWNE~F~f~v~~ 420 (1149)
+.|.|+|++|++|+.++..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+..
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~---------------~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS---------------SDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC---------------CCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 479999999999998887776 89999999963 234699999999999999999999865
Q ss_pred C-----CcEEEEEEEEccCCC-CcceeeEEEeceeecc
Q 001122 421 S-----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYS 452 (1149)
Q Consensus 421 ~-----~~~L~~~V~D~D~~~-ddfIG~a~IpL~~L~~ 452 (1149)
. ...|.|+|||++..+ +++||++.++|.+|..
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 2 468999999999865 8999999999999884
No 108
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.48 E-value=1.6e-13 Score=134.93 Aligned_cols=97 Identities=29% Similarity=0.401 Sum_probs=83.6
Q ss_pred EEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEE------EeeeeeeeCCCCCeeceEEEEEccC-CCcE
Q 001122 352 WIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAV------VGRTFVISNSEDPVWQQHFYVPVAH-SAAE 424 (1149)
Q Consensus 352 tVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~------~~rTkVi~nt~NPvWNE~F~f~v~~-~~~~ 424 (1149)
..++|++|+++|..|. +||||+|.+.+.. .+||++++++.||+|||+|.|.+.. ....
T Consensus 5 ~~i~a~~L~~~d~~g~---------------~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~ 69 (120)
T cd04048 5 LSISCRNLLDKDVLSK---------------SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQK 69 (120)
T ss_pred EEEEccCCCCCCCCCC---------------CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeE
Confidence 4589999999998876 8999999997643 5699999999999999999998643 3468
Q ss_pred EEEEEEEccC-----CCCcceeeEEEeceeeccCCceeeeeeec
Q 001122 425 VHFFVKDSDV-----VGSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 425 L~~~V~D~D~-----~~ddfIG~a~IpL~~L~~G~~~~~W~~L~ 463 (1149)
|.|+|||+|. .++++||++.+++.+|..+.....|++|.
T Consensus 70 l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 70 LRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred EEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999995 46899999999999999887778899994
No 109
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.48 E-value=3.7e-13 Score=133.63 Aligned_cols=116 Identities=26% Similarity=0.366 Sum_probs=89.8
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEE
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1149)
.|.|+|++|+ |...+..+. +||||+|.+++...+||++++++.||+|||+|.|.+.. ...|.|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~---------------~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~ 65 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFK---------------PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEF 65 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCC---------------CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEE
Confidence 5899999999 554554554 89999999998755799999999999999999999863 468999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCC---c--eeeeeeecCCCCCCCCCCCcEEEEE
Q 001122 428 FVKDSDVV-GSELIGTVAIPVEQIYSGG---K--VEGTYPVLNGSGKPCKPGATLTLSI 480 (1149)
Q Consensus 428 ~V~D~D~~-~ddfIG~a~IpL~~L~~G~---~--~~~W~~L~~~~gk~~~~~g~L~L~l 480 (1149)
+|||++.. .+++||++.++|.++..+. . ...|++|.....-..+..|.|++.+
T Consensus 66 ~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 66 KVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999985 6889999999999988532 1 3358998643310123346777654
No 110
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.47 E-value=4.5e-13 Score=135.29 Aligned_cols=114 Identities=25% Similarity=0.407 Sum_probs=88.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E----------EEeeeeeeeCCCCCee-ceEEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A----------VVGRTFVISNSEDPVW-QQHFY 415 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~--~----------~~~rTkVi~nt~NPvW-NE~F~ 415 (1149)
..|++++|++|+ ++.+|+ +||||+|.+.. . ...||+++++++||+| ||+|.
T Consensus 3 ~~~~~~~A~~L~-~~~fg~---------------~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~ 66 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFN---------------PDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFV 66 (137)
T ss_pred EEEEEEEeCCCC-CccCCC---------------CCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEE
Confidence 689999999998 777776 89999999953 1 1469999999999999 99999
Q ss_pred EEccCCCcEEEEEEEEccCC----CCcceeeEEEeceeeccC---CceeeeeeecCCCCCCCCCCCcEEEEE
Q 001122 416 VPVAHSAAEVHFFVKDSDVV----GSELIGTVAIPVEQIYSG---GKVEGTYPVLNGSGKPCKPGATLTLSI 480 (1149)
Q Consensus 416 f~v~~~~~~L~~~V~D~D~~----~ddfIG~a~IpL~~L~~G---~~~~~W~~L~~~~gk~~~~~g~L~L~l 480 (1149)
|.+.. ...|.|+|+|++.. ++++||++.|++.+|..+ .....|++|...... ..-.|+|.|++
T Consensus 67 f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~-s~v~G~~~l~~ 136 (137)
T cd08691 67 FVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPT-DHVSGQLTFRF 136 (137)
T ss_pred EEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCC-CcEEEEEEEEe
Confidence 99863 46899999998753 279999999999999865 235678998533222 22345666554
No 111
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.47 E-value=9.2e-14 Score=140.21 Aligned_cols=107 Identities=20% Similarity=0.275 Sum_probs=89.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeeeCCCCCeeceEEEEEccCC-
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~--~--~~~rTkVi~nt~NPvWNE~F~f~v~~~- 421 (1149)
+.|.|+|++|+||+.++ .+. +||||+|.+.. . ..+||++++++.||+|||+|.|.+...
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~---------------~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAH---------------TSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred CeEEEEEEEecCCCccc-CCC---------------CCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 57999999999999888 554 89999999853 2 235999999999999999999998643
Q ss_pred --CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCC
Q 001122 422 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 469 (1149)
Q Consensus 422 --~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~ 469 (1149)
...|.|+|+|.+. .++++||++.|+......|...+.|..++...+++
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~ 129 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKEL 129 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCc
Confidence 2679999999996 56889999999987777788889999998665554
No 112
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=6.1e-13 Score=157.15 Aligned_cols=177 Identities=21% Similarity=0.193 Sum_probs=126.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE--EEeeeeeeeCCCCCeeceEEEEEccCC---
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS--- 421 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~--~~~rTkVi~nt~NPvWNE~F~f~v~~~--- 421 (1149)
..|.|+|++|++|+.+|..|. +||||++.+-.. ...+|+|.++++||+|||+|.|.+...
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~---------------sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~ 231 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGT---------------SDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELS 231 (421)
T ss_pred CEEEEEEEEecCCCcccCCCC---------------CCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhc
Confidence 469999999999999994443 899999999542 234999999999999999999997654
Q ss_pred CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeeccccc-ccccC-CCCC-
Q 001122 422 AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERL-SFYHR-GVGE- 497 (1149)
Q Consensus 422 ~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~~~d-~~~~~-Gv~~- 497 (1149)
...|.|+|+|.|. ..+++||++.++|..+........|.+|........+..|+|.++++|.|.... .++-. +-.-
T Consensus 232 ~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~ 311 (421)
T KOG1028|consen 232 NRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLK 311 (421)
T ss_pred cCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCC
Confidence 4789999999999 568999999999998887666788999976533333334799999999998542 22211 1000
Q ss_pred CCCCCCCCCCCCCccccceeEecccccCCCCCCCceeecCCCccchh
Q 001122 498 GPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHG 544 (1149)
Q Consensus 498 ~~~~~~vp~~~~p~~~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~ 544 (1149)
..+-.+.+++| .++.++.++.....++..++-...+++.++
T Consensus 312 ~~~~~~~~d~~------Vk~~l~~~~~~~~kkkT~~~~~~~npv~ne 352 (421)
T KOG1028|consen 312 SMDVGGLSDPY------VKVTLLDGDKRLSKKKTSVKKKTLNPVFNE 352 (421)
T ss_pred cccCCCCCCcc------EEEEEecCCceeeeeeeecccCCCCCcccc
Confidence 01222333333 467777776544444555555555554433
No 113
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.45 E-value=4.9e-13 Score=132.62 Aligned_cols=89 Identities=27% Similarity=0.449 Sum_probs=78.6
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEE-eeeeeeeCCCCCeeceEEEEEccCC-CcEEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVV-GRTFVISNSEDPVWQQHFYVPVAHS-AAEVH 426 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~-~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L~ 426 (1149)
|+|+|++|++|+++|..+. +||||+|.+++... .||++++++.||+|||+|.|.+..+ ...|.
T Consensus 2 lrV~Vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~ 66 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGK---------------SDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILK 66 (124)
T ss_pred EEEEEEECcCCCCCCCCCC---------------CCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEE
Confidence 7999999999999998776 89999999988654 4899999999999999999998654 47899
Q ss_pred EEEEEccCC-CCcceeeEEEeceeecc
Q 001122 427 FFVKDSDVV-GSELIGTVAIPVEQIYS 452 (1149)
Q Consensus 427 ~~V~D~D~~-~ddfIG~a~IpL~~L~~ 452 (1149)
|+|||+|.. ++++||++.+++.+...
T Consensus 67 ~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 67 ISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEECCCCCCCceeEEEEEeeccccc
Confidence 999999985 68999999999987763
No 114
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.45 E-value=1.8e-13 Score=181.07 Aligned_cols=122 Identities=20% Similarity=0.409 Sum_probs=101.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCC--
Q 001122 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-- 422 (1149)
Q Consensus 345 l~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~-- 422 (1149)
+-|.|+|+|++|++|. .+ +|. +||||+|.+++....||||++++.||+|||+|+|.+.++.
T Consensus 1978 ~~G~L~V~V~~a~nl~-~~-~~~---------------sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~ 2040 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-QS-MGN---------------TNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKG 2040 (2102)
T ss_pred CCcceEEEEeeccccc-cc-cCC---------------CCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCC
Confidence 4589999999999998 33 343 8999999999764459999999999999999998887764
Q ss_pred cEEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeec
Q 001122 423 AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 423 ~~L~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p 484 (1149)
..|+|+|||+|.++++.||.+.|++.++..+....+||+|.+ +|++.+..-.|+|.++|.+
T Consensus 2041 ~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2041 QKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 679999999999999999999999999998889999999973 3332221124999988764
No 115
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.44 E-value=6.3e-13 Score=131.12 Aligned_cols=100 Identities=23% Similarity=0.320 Sum_probs=82.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEccCC-
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v~~~- 421 (1149)
++|.|+|++|++|++.+..+. +||||+|.+.. ...+||++++++.||+|||+|.|.....
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~---------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 15 SALHCTIIRAKGLKAMDANGL---------------SDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred CEEEEEEEEeeCCCCCCCCCC---------------CCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 579999999999998887665 89999999832 2346999999999999999999963222
Q ss_pred ---CcEEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeee
Q 001122 422 ---AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYP 461 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~ 461 (1149)
...|.|+|||++..++++||++.+++.+|..+...+.|+.
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 3589999999987788999999999999997766555543
No 116
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.43 E-value=2.2e-13 Score=137.79 Aligned_cols=109 Identities=20% Similarity=0.302 Sum_probs=88.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC---CE--EEeeeeeeeCCCCCeeceEEEEEccC
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---GA--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~---~~--~~~rTkVi~nt~NPvWNE~F~f~v~~ 420 (1149)
.++|.|+|++|+||+.++..+. +||||+|.+. +. ...||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~---------------~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~ 78 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKA---------------PDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL 78 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC---------------CCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH
Confidence 4789999999999998887775 8999999983 22 23499999999999999999999874
Q ss_pred C---CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCC
Q 001122 421 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 421 ~---~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~ 470 (1149)
. ...|.|+|+|.+. .++++||++.|++...-. ...+.|+.++...+++.
T Consensus 79 ~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~~~v 131 (138)
T cd08408 79 FQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKGQQV 131 (138)
T ss_pred HHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCCCEE
Confidence 3 3689999999986 568899999998874321 34578999987666643
No 117
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.42 E-value=1.4e-12 Score=127.68 Aligned_cols=104 Identities=18% Similarity=0.353 Sum_probs=77.6
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEccCCCcE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHSAAE 424 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~ 424 (1149)
|.|+|++|+||+ +. +||||+|.++. ...+||+++++|+||+|||+|.|.+.. ...
T Consensus 1 L~V~V~~A~~L~-----~~---------------sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~ 59 (118)
T cd08686 1 LNVIVHSAQGFK-----QS---------------ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQT 59 (118)
T ss_pred CEEEEEeCCCCC-----CC---------------CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCE
Confidence 689999999996 33 79999999964 345799999999999999999999974 679
Q ss_pred EEEEEEEcc-------C-CCCcceeeEEEece--eeccCCceeeeeeecCCCCCCCCCCCcEEEEEEe
Q 001122 425 VHFFVKDSD-------V-VGSELIGTVAIPVE--QIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 425 L~~~V~D~D-------~-~~ddfIG~a~IpL~--~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f 482 (1149)
|.|.|||++ . ..|++||++.|.|. .+......+.-+.|- +-+|.++|+|
T Consensus 60 L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~---------~~~~~~s~~~ 118 (118)
T cd08686 60 LRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN---------GITVNLSIKF 118 (118)
T ss_pred EEEEEEEcccccccccccCcccEEEEEEEEECHHHhccCCeeEEEEEec---------CEEEEEEEeC
Confidence 999999983 3 45889988888774 333222233334441 1267777775
No 118
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.41 E-value=3.2e-12 Score=151.39 Aligned_cols=126 Identities=19% Similarity=0.217 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCch
Q 001122 840 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 919 (1149)
Q Consensus 840 ~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s 919 (1149)
.+..++++++|.+||++|+|+++||+++.. . ....+..+..+|++| +++||+|+|+++.. +.+
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~-------~--~~~~G~~i~~aL~~a--A~rGV~VRIL~d~~--~~~---- 87 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISSFYWSLSDE-------V--GTNFGTMILNEIIQL--PKRGVRVRIAVNKS--NKP---- 87 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEeEEEecCcc-------c--cchhHHHHHHHHHHH--HHCCCEEEEEECCC--CCc----
Confidence 378899999999999999999999995421 0 011234567777765 46999999999852 110
Q ss_pred hHHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCccccee
Q 001122 920 TQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYV 999 (1149)
Q Consensus 920 ~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iYV 999 (1149)
....+.|+++|+++++ |.... +.....
T Consensus 88 ----------------~~~~~~L~~aGv~v~~--------~~~~~-----------------------------~~~~~~ 114 (424)
T PHA02820 88 ----------------LKDVELLQMAGVEVRY--------IDITN-----------------------------ILGGVL 114 (424)
T ss_pred ----------------hhhHHHHHhCCCEEEE--------EecCC-----------------------------CCcccc
Confidence 1234679999998863 11000 001368
Q ss_pred eeEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeC
Q 001122 1000 HSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQ 1037 (1149)
Q Consensus 1000 HSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~d 1037 (1149)
|+|+||||++++.|||+||+.||+. .+.|+++.+.+
T Consensus 115 HrK~~VIDg~~~~iGS~Nid~rsl~--~n~E~gv~i~~ 150 (424)
T PHA02820 115 HTKFWISDNTHIYLGSANMDWRSLT--QVKELGIAIFN 150 (424)
T ss_pred eeeEEEECCCEEEEeCCcCChhhhh--hCCceEEEEec
Confidence 9999999999999999999999997 79999998875
No 119
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.33 E-value=1.7e-11 Score=127.63 Aligned_cols=131 Identities=23% Similarity=0.308 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCc
Q 001122 839 DMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 918 (1149)
Q Consensus 839 e~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~ 918 (1149)
..++.+.++++|++|++.|+|+++||.+.. .....++..+|.+|. ++|++|+||+........
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~--~rGv~V~il~~~~~~~~~--- 81 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAA--RRGVKVRILVDEWSNTDL--- 81 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHH--HCCCEEEEEEcccccCCc---
Confidence 357899999999999999999999998631 001236777888775 469999999997653210
Q ss_pred hhHHHHHHHHHhHhhHHHHHHHHHHHc---CCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcc
Q 001122 919 ATQRILFWQHKTMQMMYETIYKALVEV---GLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRF 995 (1149)
Q Consensus 919 s~~~il~~~~rTm~~~~~si~~~L~~~---Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~ 995 (1149)
. ....+...|.+. |++++..+ ... . .
T Consensus 82 ---~-----------~~~~~~~~l~~~~~~~i~~~~~~----------~~~-------------------------~--~ 110 (176)
T cd00138 82 ---K-----------ISSAYLDSLRALLDIGVRVFLIR----------TDK-------------------------T--Y 110 (176)
T ss_pred ---h-----------HHHHHHHHHHHhhcCceEEEEEc----------CCc-------------------------c--c
Confidence 0 011344555554 56554210 000 0 1
Q ss_pred cceeeeEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeCcc
Q 001122 996 MIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPE 1039 (1149)
Q Consensus 996 ~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~ 1039 (1149)
...+|+|+||||++.++|||+|++.+++. .|.|+++.+.+++
T Consensus 111 ~~~~H~K~~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 111 GGVLHTKLVIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred ccceeeeEEEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 24799999999999999999999999998 7999999999986
No 120
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.32 E-value=1.2e-11 Score=144.49 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhhcceEEEEEeccceeeEEeCCC-CchHHHHHHHHHHHh-hcCCcEEEEEecCCCcccccccccccccc
Q 001122 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-PALDCTLGELLRSKS-QEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1149)
Q Consensus 546 ~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~-~~~g~~L~dlL~~kA-~rGVkVrILvwD~~gs~~~~g~k~~g~~~ 623 (1149)
..++++++|.+||++|+|+.+.|.| .++.+. ...+..|.++|++|| +|||+||||+ |..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P---~~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~---------- 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVP---VIREDDKTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV---------- 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEecccc---EEeeCCCCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc----------
Confidence 3588999999999999999997755 333332 224578999999885 9999999997 66432110
Q ss_pred cccHHHHHHhhcCCcE----EEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCC
Q 001122 624 THDEETRRVFKHSSVK----VLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 699 (1149)
Q Consensus 624 t~~~~t~~~l~~~gV~----v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt 699 (1149)
......+.|+..|++ |..+ .+.+|+|++|||++ +|||||.|+...++..
T Consensus 283 -~~~~~~~~L~~~G~~~~i~vri~------------------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s~~~ 335 (369)
T PHA03003 283 -YSMASVKSLQALCVGNDLSVKVF------------------RIPNNTKLLIVDDE--------FAHITSANFDGTHYLH 335 (369)
T ss_pred -hhhhHHHHHHHcCCCCCceEeee------------------cCCCCceEEEEcCC--------EEEEeccccCchhhcc
Confidence 011234456666644 2221 12279999999996 9999999998754431
Q ss_pred CCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhh
Q 001122 700 PHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKA 759 (1149)
Q Consensus 700 ~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~a 759 (1149)
..|.++ ..++|++|.++...|.++|+..
T Consensus 336 -------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 -------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred -------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 122332 2468999999999999999854
No 121
>PRK13912 nuclease NucT; Provisional
Probab=99.32 E-value=3.5e-11 Score=126.71 Aligned_cols=140 Identities=20% Similarity=0.271 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCccccccccccccccc
Q 001122 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1149)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t 624 (1149)
+++..|+++|++|+++|+|+.|.+ .+ ..|.++|.+|++|||+|+||+ |...+...
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~~-------~~------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~----------- 87 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYSF-------TH------KDIAKALKSAAKRGVKISIIY-DYESNHNN----------- 87 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEEE-------ch------HHHHHHHHHHHHCCCEEEEEE-eCccccCc-----------
Confidence 578999999999999999998854 22 579999999999999999996 76543210
Q ss_pred ccHHHHHHh-hcCCcEEEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCCCCCC
Q 001122 625 HDEETRRVF-KHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 703 (1149)
Q Consensus 625 ~~~~t~~~l-~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~ 703 (1149)
...+..++ +..++++.......... ......+|.|++|||++ ++++|+.|++...+..
T Consensus 88 -~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~~---- 146 (177)
T PRK13912 88 -DQSTIGYLDKYPNIKVCLLKGLKAKN--------GKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFEN---- 146 (177)
T ss_pred -chhHHHHHHhCCCceEEEecCccccC--------cccccccceeEEEEcCC--------EEEEeCCCCChhHhcc----
Confidence 01111222 23566665543211000 01124689999999996 9999999999865421
Q ss_pred cccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHHHHHHHHhh
Q 001122 704 LFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKA 759 (1149)
Q Consensus 704 l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~F~qrWn~a 759 (1149)
-+++.+.++.| .+.++.+.|.+.|...
T Consensus 147 -----------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 147 -----------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred -----------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 13577888888 5799999999999864
No 122
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.30 E-value=1.3e-11 Score=119.34 Aligned_cols=87 Identities=31% Similarity=0.531 Sum_probs=73.5
Q ss_pred EEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE-----EEeeeeeeeCCCCCeeceEEEEEccC-----
Q 001122 351 IWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA-----VVGRTFVISNSEDPVWQQHFYVPVAH----- 420 (1149)
Q Consensus 351 VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~-----~~~rTkVi~nt~NPvWNE~F~f~v~~----- 420 (1149)
+-+++|++|+.+|..+. +||||+|.+.+. ...||++++++.||+|| +|.|++..
T Consensus 4 ~~~i~a~~L~~~d~~~~---------------~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~ 67 (110)
T cd04047 4 ELQFSGKKLDKKDFFGK---------------SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGD 67 (110)
T ss_pred EEEEEeCCCCCCCCCCC---------------CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCC
Confidence 45679999999998876 899999998543 34699999999999999 79988642
Q ss_pred CCcEEEEEEEEccCC-CCcceeeEEEeceeeccC
Q 001122 421 SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG 453 (1149)
Q Consensus 421 ~~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G 453 (1149)
....|.|+|||+|.. ++++||++.+++.+|..+
T Consensus 68 ~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 68 YDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred cCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 247899999999986 589999999999999844
No 123
>PRK13912 nuclease NucT; Provisional
Probab=99.29 E-value=3e-11 Score=127.25 Aligned_cols=128 Identities=21% Similarity=0.224 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCch
Q 001122 840 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 919 (1149)
Q Consensus 840 ~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s 919 (1149)
..+...++++|++|++.|+|+. |++.. .+++.+|.+|. +|||+|+||++...... .
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~-----------------~~i~~aL~~Aa--~RGV~VrIlld~~~~~~----~ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTH-----------------KDIAKALKSAA--KRGVKISIIYDYESNHN----N 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEch-----------------HHHHHHHHHHH--HCCCEEEEEEeCccccC----c
Confidence 3577889999999999999996 66643 25777787764 68999999998753210 0
Q ss_pred hHHHHHHHHHhHhhHHHHHHHHHHH-cCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccce
Q 001122 920 TQRILFWQHKTMQMMYETIYKALVE-VGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 998 (1149)
Q Consensus 920 ~~~il~~~~rTm~~~~~si~~~L~~-~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iY 998 (1149)
... ....|.+ .+++.... ..+... ......+
T Consensus 88 ~~~---------------~~~~l~~~~~~~~~~~-------~~~~~~--------------------------~~~~~~~ 119 (177)
T PRK13912 88 DQS---------------TIGYLDKYPNIKVCLL-------KGLKAK--------------------------NGKYYGI 119 (177)
T ss_pred chh---------------HHHHHHhCCCceEEEe-------cCcccc--------------------------Ccccccc
Confidence 000 0111111 13332210 000000 0001236
Q ss_pred eeeEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeCcchh
Q 001122 999 VHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 999 VHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
+|+|+||||++++++||+||+.+|+. .|.|+++++.|++..
T Consensus 120 ~H~K~~viD~~~~~iGS~N~t~~s~~--~N~E~~lii~d~~~~ 160 (177)
T PRK13912 120 MHQKVAIIDDKIVVLGSANWSKNAFE--NNYEVLLITDDTETI 160 (177)
T ss_pred cceeEEEEcCCEEEEeCCCCChhHhc--cCCceEEEECCHHHH
Confidence 89999999999999999999999998 899999999998753
No 124
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.26 E-value=2.8e-11 Score=146.71 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=112.6
Q ss_pred cceeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHH
Q 001122 514 GGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSK 593 (1149)
Q Consensus 514 Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~k 593 (1149)
.+.++++.+|.. ......+..++++|.+||++|+|++..| +.+ ..+.++|+.|
T Consensus 328 ~~~~q~~~sgp~---------------~~~~~i~~~~l~~I~~A~~~I~I~tpYf------~pd------~~l~~aL~~A 380 (509)
T PRK12452 328 EGAVQIVASGPS---------------SDDKSIRNTLLAVMGSAKKSIWIATPYF------IPD------QETLTLLRLS 380 (509)
T ss_pred CeEEEEEeCCCC---------------chhHHHHHHHHHHHHHhhhEEEEECCcc------CCC------HHHHHHHHHH
Confidence 346888888751 1123578999999999999999998532 222 5789999999
Q ss_pred hhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEec
Q 001122 594 SQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVD 673 (1149)
Q Consensus 594 A~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD 673 (1149)
|+|||+||||+ +....... .........+.|..+||++..+.+ ...|.|++|||
T Consensus 381 a~rGV~Vrii~-p~~~D~~~--------~~~a~~~~~~~L~~aGv~I~~y~~-----------------~~lHaK~~ivD 434 (509)
T PRK12452 381 AISGIDVRILY-PGKSDSII--------SDQASQSYFTPLLKAGASIYSYKD-----------------GFMHAKIVLVD 434 (509)
T ss_pred HHcCCEEEEEc-CCCCChHH--------HHHHHHHHHHHHHHcCCEEEEecC-----------------CCeeeeEEEEC
Confidence 99999999997 54321100 000112334556778999977643 13799999999
Q ss_pred CCCCCCCccEEEEEccccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHH
Q 001122 674 ADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFE 753 (1149)
Q Consensus 674 ~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~ 753 (1149)
++ +|+||+.|+....+ +..|.+..+..+++.|.++...|.
T Consensus 435 ~~--------~a~vGS~Nld~RS~--------------------------------~~n~E~~~~i~~~~~~~~l~~~f~ 474 (509)
T PRK12452 435 DK--------IATIGTANMDVRSF--------------------------------ELNYEIISVLYESETVHDIKRDFE 474 (509)
T ss_pred CC--------EEEEeCcccCHhHh--------------------------------hhhhhccEEEECHHHHHHHHHHHH
Confidence 96 99999999977433 134667888899999999999999
Q ss_pred HHHHhh
Q 001122 754 ERWRKA 759 (1149)
Q Consensus 754 qrWn~a 759 (1149)
++|..+
T Consensus 475 ~d~~~s 480 (509)
T PRK12452 475 DDFKHS 480 (509)
T ss_pred HHHHhC
Confidence 999875
No 125
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.3e-11 Score=143.43 Aligned_cols=115 Identities=26% Similarity=0.405 Sum_probs=96.0
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEE
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1149)
.++++|+.|++|...|-.|+ +||||++.+++.+. ||++|...+||+|||.|+|.|.+....+.+
T Consensus 296 kitltvlcaqgl~akdktg~---------------sdpyvt~qv~ktkr-rtrti~~~lnpvw~ekfhfechnstdrikv 359 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGK---------------SDPYVTAQVGKTKR-RTRTIHQELNPVWNEKFHFECHNSTDRIKV 359 (1283)
T ss_pred eeEEeeeecccceecccCCC---------------CCCcEEEeecccch-hhHhhhhccchhhhhheeeeecCCCceeEE
Confidence 58899999999999998887 99999999999885 999999999999999999999999899999
Q ss_pred EEEEccC------------CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEE
Q 001122 428 FVKDSDV------------VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1149)
Q Consensus 428 ~V~D~D~------------~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~ 481 (1149)
.|||.|. .+|||+|++.|.+..|. | ..+-||.|..+..|. .-.|.|+|.|.
T Consensus 360 rvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynlekrtdks-avsgairlhis 422 (1283)
T KOG1011|consen 360 RVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNLEKRTDKS-AVSGAIRLHIS 422 (1283)
T ss_pred EEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcchhhccchh-hccceEEEEEE
Confidence 9999885 24899999999998775 4 478999996444343 23345555554
No 126
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.22 E-value=3.6e-11 Score=108.91 Aligned_cols=81 Identities=41% Similarity=0.642 Sum_probs=69.4
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE--EEeeeeeeeCCCCCeeceEEEEEccCC-CcEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~--~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L 425 (1149)
|+|+|++|++|...+..+. .||||+|.+.+. ...+|+++.++.+|.|||+|.|.+... ...|
T Consensus 1 L~v~I~~a~~L~~~~~~~~---------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l 65 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK---------------PDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSL 65 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS---------------BEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEE
T ss_pred CEEEEEEEECCCCcccCCc---------------ccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccce
Confidence 7899999999998776555 899999999872 225999999999999999999996433 4679
Q ss_pred EEEEEEccCCC-CcceeeEE
Q 001122 426 HFFVKDSDVVG-SELIGTVA 444 (1149)
Q Consensus 426 ~~~V~D~D~~~-ddfIG~a~ 444 (1149)
.|+|||++..+ +++||+++
T Consensus 66 ~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 66 SFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEETSSSSEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEEEC
Confidence 99999999976 89999985
No 127
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.18 E-value=4.4e-11 Score=141.97 Aligned_cols=128 Identities=23% Similarity=0.283 Sum_probs=111.4
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEE
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1149)
.|+|+|.+|+||+..+..|. .||||+|.++.+.+.||.++.+++.|.|.|+|+|++...-..|.|
T Consensus 6 sl~vki~E~knL~~~~~~g~---------------~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~f 70 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGM---------------RDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSF 70 (800)
T ss_pred ceeEEEeecccCCCCCCCCC---------------cCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEE
Confidence 48999999999999888776 899999999999999999999999999999999999877789999
Q ss_pred EEEEccCCCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeecccccccc
Q 001122 428 FVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFY 491 (1149)
Q Consensus 428 ~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~~~d~~~ 491 (1149)
-|||.|...|+.||++.|.-++|..-...+.||.|..-+-.. .-+|+|+|++++.+......-
T Consensus 71 Yv~D~d~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~ds-EVQG~v~l~l~~~e~~~~~~~ 133 (800)
T KOG2059|consen 71 YVWDRDLKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDS-EVQGKVHLELALTEAIQSSGL 133 (800)
T ss_pred EEeccccccccccceeeeeHHHHhhCCCCccceeccccCCCh-hhceeEEEEEEeccccCCCcc
Confidence 999999888999999999999998666788999995433221 245799999999988775543
No 128
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.17 E-value=1.2e-10 Score=114.58 Aligned_cols=114 Identities=26% Similarity=0.380 Sum_probs=75.1
Q ss_pred HHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHH
Q 001122 846 YVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILF 925 (1149)
Q Consensus 846 yl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~ 925 (1149)
++++|++|++.|+|..+||... ++..+|+.+ +.+|++|+||+........ ....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~--~~~gv~v~ii~~~~~~~~~--~~~~---- 54 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDA--AKRGVKVRIIVDSNQDDSE--AINL---- 54 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHH--HHTT-EEEEEEECGGGHHC--CCSH----
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHH--HHCCCeEEEEECCCccccc--hhhh----
Confidence 3689999999999999999432 355566553 4689999999986321000 0000
Q ss_pred HHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccceeeeEEEE
Q 001122 926 WQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMI 1005 (1149)
Q Consensus 926 ~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iYVHSKlmI 1005 (1149)
.....+.+.+.+.|++++ .++|+|++|
T Consensus 55 -------~~~~~~~~~~~~~~i~v~----------------------------------------------~~~H~K~~i 81 (126)
T PF13091_consen 55 -------ASLKELRELLKNAGIEVR----------------------------------------------NRLHAKFYI 81 (126)
T ss_dssp -------HHHHHHHHHHHHTTHCEE----------------------------------------------S-B--EEEE
T ss_pred -------HHHHHHHhhhccceEEEe----------------------------------------------cCCCcceEE
Confidence 011223444466776542 168999999
Q ss_pred EeCeEEEEcccCcccccCCCCCCcceEEEEeCcch
Q 001122 1006 VDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEY 1040 (1149)
Q Consensus 1006 VDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~ 1040 (1149)
+||++++|||+||+.+||. +|.|+++.+.++..
T Consensus 82 ~d~~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~~ 114 (126)
T PF13091_consen 82 IDDKVAIIGSANLTSSSFR--RNYELGVIIDDPEL 114 (126)
T ss_dssp ETTTEEEEES--CSCCCSC--TSEEEEEEEECHHH
T ss_pred ecCccEEEcCCCCCcchhc--CCcceEEEEECHHH
Confidence 9999999999999999997 89999999999863
No 129
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.17 E-value=1.1e-08 Score=117.11 Aligned_cols=341 Identities=18% Similarity=0.184 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHhhcceEEEEEeccce-eeEE-eCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCcccccccccccccc
Q 001122 546 CWYDICNAISQAQRLIYITGWSVWHK-VKLV-RDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1149)
Q Consensus 546 ~f~al~eAI~~Ar~sI~I~~W~~~p~-i~L~-rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~ 623 (1149)
.+++.++.|++|+++|+|..|-.+=. ..+- .+.....|..+..+|.+++.+||+|||..--..+.. +
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~dsSt~~G~~vy~~L~~~~~~gIsiriA~~~p~~~~--~--------- 141 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDSSTQYGEQVYNTLLALAKSGVKIRIAQSYPSGGP--P--------- 141 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccCCCcchHHHHHHHHHHHhccCCeEEEEEeecCCCCC--C---------
Confidence 46888999999999999987632210 1111 111233688999999999999999999872222211 0
Q ss_pred cccHHHHHHhhcCC-cEEEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCCCCC
Q 001122 624 THDEETRRVFKHSS-VKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHH 702 (1149)
Q Consensus 624 t~~~~t~~~l~~~g-V~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H 702 (1149)
......|...| ++++-..- +.|. + -.-.|-|..|||++ --|+||.|+... =-|.
T Consensus 142 ---~~d~~~Le~~Gaa~vr~id~-----~~l~-----g-~GvlHtKf~vvD~k--------hfylGSaNfDWr-SlTq-- 196 (456)
T KOG3603|consen 142 ---NADLQVLESLGLAQVRSIDM-----NRLT-----G-GGVLHTKFWVVDIK--------HFYLGSANFDWR-SLTQ-- 196 (456)
T ss_pred ---cccHHHHHhCCCceEEeecc-----cccc-----c-CceEEEEEEEEecc--------eEEEeccccchh-hccc--
Confidence 11223444555 56653221 1111 0 13479999999996 889999999873 2111
Q ss_pred CcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcC--HHHHHHHHHHHHHHHhhcCCCCccccCcchhhhhhhcc
Q 001122 703 PLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDG--PAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIER 780 (1149)
Q Consensus 703 ~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~G--Paa~Dl~~~F~qrWn~at~~~~~~~l~~~~~~ll~~~~ 780 (1149)
--.+++.++- -.|.||.+.|++.|........+.+.....-.......
T Consensus 197 ------------------------------vkElGv~v~NCpclakDL~kiFe~yW~lg~~~s~~p~~wp~~~st~~N~~ 246 (456)
T KOG3603|consen 197 ------------------------------VKELGVVVRNCPCLAKDLKKIFERYWYLGNAKSLIPKKWPNCYSTHYNKP 246 (456)
T ss_pred ------------------------------eeEeeeEEecChhHHHHHHHHHHHHhcCCCCCccCCCCCccccccccccc
Confidence 0134444433 47999999999999965433211111100000000000
Q ss_pred CCCccCCCCCCCcccCCCCCceEEEEEeccCCcccccCCCChhhhhccccccCccccchHHHHHHHHHHHHhhccEEEEE
Q 001122 781 IPGIIGISDAPSVRENDAESWHVQVIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIE 860 (1149)
Q Consensus 781 ~p~~~~~~~~p~~~~~~~~~~~VQ~vlRS~~~~s~~~fP~~P~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ar~~IYIE 860 (1149)
.|.-. . .+......+ +..| |.. -.++|+. -=.+|+++.|..|++||||.
T Consensus 247 ~p~~~--------~-~dg~~~~~y-~saS------------P~~----~~~~grt-----~DL~ail~~i~~A~~fv~is 295 (456)
T KOG3603|consen 247 LPMKI--------A-VDGTPATPY-ISAS------------PPP----LNPSGRT-----WDLEAILNTIDEAQKFVYIS 295 (456)
T ss_pred Cccee--------e-cCCCCcceE-EccC------------CCC----CCCCCCc-----hhHHHHHHHHHHHhhheeee
Confidence 00000 0 000111122 2211 110 1123321 23589999999999999995
Q ss_pred -EeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHHhHhhHHHHHH
Q 001122 861 -NQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIY 939 (1149)
Q Consensus 861 -NQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~ 939 (1149)
.+||=+..+. +. .+.= +|=.+|-+| +-|||+|++++..|....+. .-+++ ++++ .+.
T Consensus 296 VMdY~Ps~~y~----k~---~~fw--~iDdaiR~a--a~RgV~vR~lvs~~~~~~~~---m~~~L----~SLq----~l~ 353 (456)
T KOG3603|consen 296 VMDYFPSTIYS----KN---HRFW--EIDDAIRRA--AVRGVKVRLLVSCWKHSEPS---MFRFL----RSLQ----DLS 353 (456)
T ss_pred ehhccchheee----cC---cchh--hhhHHHHHH--hhcceEEEEEEeccCCCCch---HHHHH----HHHH----Hhc
Confidence 5677543321 01 0000 233333333 24899999999988753221 11111 0100 111
Q ss_pred HHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccceeeeEEEEEeCeEEEEcccCcc
Q 001122 940 KALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANIN 1019 (1149)
Q Consensus 940 ~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN 1019 (1149)
..+....|++++ |-.-.-+ .+..| +....|+|.||-++ .++||++|+-
T Consensus 354 ~~~~~~~iqvk~--------f~VP~~~--------------~~~ip---------~~Rv~HnKymVTe~-aayIGTSNws 401 (456)
T KOG3603|consen 354 DPLENGSIQVKF--------FIVPQTN--------------IEKIP---------FARVNHNKYMVTES-AAYIGTSNWS 401 (456)
T ss_pred CccccCceEEEE--------EEeCCCc--------------cccCc---------hhhhccceeEEeec-ceeeeccCCC
Confidence 112222233332 2110000 00111 12257999999987 6899999997
Q ss_pred cccCCCCCCcceEEEEeCcc
Q 001122 1020 QRSMEGTRDTEIAMGAYQPE 1039 (1149)
Q Consensus 1020 ~RSm~G~~DsEiav~i~dp~ 1039 (1149)
.==+. --+-++|+|.++.
T Consensus 402 ~dYf~--~TaG~~ivv~q~~ 419 (456)
T KOG3603|consen 402 GDYFT--STAGTAIVVRQTP 419 (456)
T ss_pred cccee--ccCceEEEEecCC
Confidence 66565 2456788887653
No 130
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.14 E-value=2.3e-10 Score=104.86 Aligned_cols=99 Identities=33% Similarity=0.571 Sum_probs=83.1
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccC-CCcEEEE
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH-SAAEVHF 427 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~-~~~~L~~ 427 (1149)
|.|.|++|++|........ .+|||++.+.+...++|+++.++.||.|||.|.|.+.. ....|.|
T Consensus 1 l~v~i~~~~~l~~~~~~~~---------------~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i 65 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGK---------------SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTV 65 (102)
T ss_pred CEEEEEeeeCCCCcCCCCC---------------CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEE
Confidence 5799999999986543333 89999999998444699999999999999999999987 5678999
Q ss_pred EEEEccCCC-CcceeeEEEeceeec-cCCceeeeeee
Q 001122 428 FVKDSDVVG-SELIGTVAIPVEQIY-SGGKVEGTYPV 462 (1149)
Q Consensus 428 ~V~D~D~~~-ddfIG~a~IpL~~L~-~G~~~~~W~~L 462 (1149)
+|++.+..+ +++||++.+++.++. .+.....|++|
T Consensus 66 ~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 66 EVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 999988754 789999999999998 55666778765
No 131
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.13 E-value=3e-10 Score=104.98 Aligned_cols=93 Identities=39% Similarity=0.654 Sum_probs=79.5
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE--EEeeeeeeeCCCCCeeceEEEEEccCC-CcE
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS-AAE 424 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~--~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~ 424 (1149)
+|.|+|++|++|......+. .+|||++.+.+. ..++|+++.++.||.|||+|.|.+... ...
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~---------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~ 65 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGK---------------SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAE 65 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCC---------------CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCE
Confidence 37899999999986654333 799999999876 456999999999999999999999887 789
Q ss_pred EEEEEEEccCCC-CcceeeEEEeceeeccCCc
Q 001122 425 VHFFVKDSDVVG-SELIGTVAIPVEQIYSGGK 455 (1149)
Q Consensus 425 L~~~V~D~D~~~-ddfIG~a~IpL~~L~~G~~ 455 (1149)
|.|+|||++..+ +.+||.+.+++.++..+..
T Consensus 66 l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 66 LEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred EEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 999999998754 8899999999999886643
No 132
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.07 E-value=4.3e-10 Score=140.20 Aligned_cols=133 Identities=23% Similarity=0.397 Sum_probs=107.9
Q ss_pred eceEEEEEEEEeeCCCCCC--CCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCC
Q 001122 345 LHGNLDIWIYSAKNLPNMD--MFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1149)
Q Consensus 345 l~GtL~VtVieAr~L~~~D--~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~ 422 (1149)
.-|+|.|+|.+|++|+..| ..+. .|||+++.+.+...+||+|++++.||+|||+|.+.+....
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~---------------vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~ 498 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGT---------------VDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT 498 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCC---------------CCceEEEEeccccCCccceeeccCCccccceEEEEecccC
Confidence 3489999999999999777 2333 8999999999988899999999999999999999999888
Q ss_pred cEEEEEEEEccC-CCCcceeeEEEeceeeccCC-ceeeeeeecCCCCCCCCCCCcEEEEEEeecccccccccCCCC
Q 001122 423 AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGG-KVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVG 496 (1149)
Q Consensus 423 ~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~-~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~~~d~~~~~Gv~ 496 (1149)
..|.|+|||.+. .+|+++|.+.|+|..|.... ..+..+.++ .+.+.. |+|+..++|.|..++..-..|..
T Consensus 499 d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k~v---GrL~yDl~ffp~~e~k~~~~~s~ 570 (1227)
T COG5038 499 DPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTKNV---GRLTYDLRFFPVIEDKKELKGSV 570 (1227)
T ss_pred CceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccCccc---eEEEEeeeeecccCCcccccccc
Confidence 999999999554 77899999999999888543 233456664 455543 69999999999887665444443
No 133
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.06 E-value=4e-10 Score=140.49 Aligned_cols=132 Identities=25% Similarity=0.405 Sum_probs=106.4
Q ss_pred CCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEE
Q 001122 337 KGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYV 416 (1149)
Q Consensus 337 ~~~~~~~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f 416 (1149)
..+-.|+-..|.|+|.+..|.||+..|.+|. +||||++.+.++.+.+|+++++|+||+|||+|.+
T Consensus 1030 l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~---------------sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i 1094 (1227)
T COG5038 1030 LPPVEMVENSGYLTIMLRSGENLPSSDENGY---------------SDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTI 1094 (1227)
T ss_pred cCcceeecccCcEEEEEeccCCCcccccCCC---------------CCceEEEEecceecccccchhccCCCCccccceE
Confidence 3344556668999999999999999999987 8999999999998889999999999999999999
Q ss_pred EccCC-CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeecc
Q 001122 417 PVAHS-AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1149)
Q Consensus 417 ~v~~~-~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~ 485 (1149)
++... ...|.|.|+|||. .+++.||.+.|+|..|..|......++| +.++ ....+|.+++...|.+.
T Consensus 1095 ~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l-dgk~-~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1095 EVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL-DGKT-FIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred eeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec-cCcc-eEecccEeecceecchh
Confidence 98744 5789999999998 5689999999999999988666555666 3333 22334566665555543
No 134
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.04 E-value=1.2e-09 Score=107.47 Aligned_cols=124 Identities=23% Similarity=0.416 Sum_probs=84.1
Q ss_pred HHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCccccccccccccc-ccccHH
Q 001122 550 ICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVM-QTHDEE 628 (1149)
Q Consensus 550 l~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~-~t~~~~ 628 (1149)
|.++|++|+++|+|+.+.|. + ..|.++|..++++||+|+|++ +..... .+.+ ......
T Consensus 1 l~~~i~~A~~~i~i~~~~~~-------~------~~i~~~l~~~~~~gv~v~ii~-~~~~~~-------~~~~~~~~~~~ 59 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT-------D------PDIIKALLDAAKRGVKVRIIV-DSNQDD-------SEAINLASLKE 59 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS--------S------CHHHHHHHHHHHTT-EEEEEE-ECGGGH-------HCCCSHHHHHH
T ss_pred CHHHHhccCCEEEEEEEecC-------c------HHHHHHHHHHHHCCCeEEEEE-CCCccc-------cchhhhHHHHH
Confidence 57899999999999998651 1 367888888999999999998 432110 0000 011123
Q ss_pred HHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCCCCCCccccc
Q 001122 629 TRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTL 708 (1149)
Q Consensus 629 t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~~~l 708 (1149)
..+.++..|+++. .+.|.|++|||++ ++++|+.|++...|.
T Consensus 60 ~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~~---------- 100 (126)
T PF13091_consen 60 LRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSFR---------- 100 (126)
T ss_dssp HHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCSC----------
T ss_pred HHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchhc----------
Confidence 3444567777765 1379999999986 999999999987652
Q ss_pred ccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHH-HHHHHHHHHHHH
Q 001122 709 QTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPA-AYDVLTNFEERW 756 (1149)
Q Consensus 709 ~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPa-a~Dl~~~F~qrW 756 (1149)
..+++.+.++++. +.++.+.|.+.|
T Consensus 101 -----------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 -----------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -----------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -----------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2368999999995 899999999889
No 135
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.1e-09 Score=129.77 Aligned_cols=109 Identities=28% Similarity=0.455 Sum_probs=89.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--G--AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 ~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--~--~~~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
+|.|+|.|++|++|+.++..+. +||||++.+- + .+.+||.+++++.||+|||+|.|.+...
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~---------------~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~ 361 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGL---------------SDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPE 361 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCC---------------CCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHH
Confidence 4899999999999999988776 8999999983 2 2335999999999999999999988643
Q ss_pred ---CcEEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeeeecCCCCCCCC
Q 001122 422 ---AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~~-ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~ 471 (1149)
...|.|+|||+|..+ +++||.+.+.... .|.....|..+++.-+++..
T Consensus 362 ~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv~ 413 (421)
T KOG1028|consen 362 QLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPVA 413 (421)
T ss_pred HhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCcee
Confidence 256899999999955 6799998887765 55567789998877666553
No 136
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.94 E-value=1.1e-10 Score=137.87 Aligned_cols=150 Identities=21% Similarity=0.329 Sum_probs=116.2
Q ss_pred CcccCCCCCCCCCcccccCCCCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----
Q 001122 317 LVYAHSDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---- 392 (1149)
Q Consensus 317 ~p~~~~~~~h~~g~q~Va~q~~~~~~~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~---- 392 (1149)
+.|.-...+|..++-.|. |-...++. |.|.+.+|++|.++|.+|. +|||+.+.+-
T Consensus 90 ~~fg~~~~eh~~~~e~v~-~~k~P~~~-----l~is~~~ak~l~akd~ngf---------------SdP~~m~g~~p~~~ 148 (1103)
T KOG1328|consen 90 NAFGGDAAEHNALMEKVK-QNKPPSVL-----LNISLLEAKDLIAKDVNGF---------------SDPFAMMGVVPGTR 148 (1103)
T ss_pred HHhCCCHhHhhhcccccc-CCCCCcHH-----HHHHHHHhcCccccCCCCC---------------CChhhhhccccccc
Confidence 345555578888888886 32223332 7899999999999999987 8999999871
Q ss_pred ----------------------C----EEEeeeeeeeCCCCCeeceEEEEEccCCC-cEEEEEEEEccCC----------
Q 001122 393 ----------------------G----AVVGRTFVISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDVV---------- 435 (1149)
Q Consensus 393 ----------------------~----~~~~rTkVi~nt~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~~---------- 435 (1149)
| +-++-|.|+++|+||+|||+|.|.+.+-. ..+++.+||+|..
T Consensus 149 ~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~L 228 (1103)
T KOG1328|consen 149 KENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSL 228 (1103)
T ss_pred cccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHH
Confidence 0 11346888899999999999999998764 6799999998841
Q ss_pred ---------------------------CCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeeccccc
Q 001122 436 ---------------------------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERL 488 (1149)
Q Consensus 436 ---------------------------~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~~~d 488 (1149)
.|||+|++.|||.+|... ..+.||.|..++.+. +-.|.++|+|+.+..+..
T Consensus 229 NeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~-Gld~WFkLepRS~~S-~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 229 NEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD-GLDQWFKLEPRSDKS-KVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred hhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc-hHHHHhccCcccccc-cccceEEEEEEEeeeccc
Confidence 178999999999999854 478999998766654 456799999999876654
Q ss_pred c
Q 001122 489 S 489 (1149)
Q Consensus 489 ~ 489 (1149)
.
T Consensus 307 ~ 307 (1103)
T KOG1328|consen 307 R 307 (1103)
T ss_pred c
Confidence 4
No 137
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=98.92 E-value=7e-09 Score=125.49 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=106.8
Q ss_pred cceeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHH
Q 001122 514 GGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSK 593 (1149)
Q Consensus 514 Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~k 593 (1149)
++.++++.+|.. .....+...+.++|.+||++|+|++-. ++.+ ..+.++|+.+
T Consensus 302 ~~~~qi~~sgP~---------------~~~~~~~~~~~~~I~~A~~~I~I~tpY------fip~------~~i~~aL~~A 354 (483)
T PRK01642 302 GHTVQVIASGPG---------------DPEETIHQFLLTAIYSARERLWITTPY------FVPD------EDLLAALKTA 354 (483)
T ss_pred CceEEEEeCCCC---------------ChhhHHHHHHHHHHHHhccEEEEEcCC------cCCC------HHHHHHHHHH
Confidence 457888877741 111245778999999999999999732 2222 5799999999
Q ss_pred hhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEec
Q 001122 594 SQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVD 673 (1149)
Q Consensus 594 A~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD 673 (1149)
|+|||+|+||+ +....... .........+.+...||++..+.+ ...|.|++|||
T Consensus 355 a~rGV~Vril~-p~~~d~~~--------~~~~~~~~~~~L~~~Gv~I~~y~~-----------------~~~HaK~~ivD 408 (483)
T PRK01642 355 ALRGVDVRIII-PSKNDSLL--------VFWASRAFFTELLEAGVKIYRYEG-----------------GLLHTKSVLVD 408 (483)
T ss_pred HHcCCEEEEEe-CCCCCcHH--------HHHHHHHHHHHHHHcCCEEEEeCC-----------------CceEeEEEEEC
Confidence 99999999997 44321110 000112233445678999876632 12699999999
Q ss_pred CCCCCCCccEEEEEccccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHHH
Q 001122 674 ADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNF 752 (1149)
Q Consensus 674 ~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~F 752 (1149)
++ +++||+.|+...-|. --+++.+.|.++ .+.++.+.|
T Consensus 409 ~~--------~~~vGS~N~d~rS~~---------------------------------~N~E~~~~i~d~~~~~~l~~~f 447 (483)
T PRK01642 409 DE--------LALVGTVNLDMRSFW---------------------------------LNFEITLVIDDTGFAADLAAMQ 447 (483)
T ss_pred CC--------EEEeeCCcCCHhHHh---------------------------------hhhcceEEEECHHHHHHHHHHH
Confidence 96 999999999664331 113788889888 589999999
Q ss_pred HHHHHhh
Q 001122 753 EERWRKA 759 (1149)
Q Consensus 753 ~qrWn~a 759 (1149)
.++|...
T Consensus 448 ~~d~~~s 454 (483)
T PRK01642 448 EDYFARS 454 (483)
T ss_pred HHHHHhC
Confidence 9999865
No 138
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.88 E-value=7.4e-09 Score=104.01 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=75.9
Q ss_pred EEEEEEEeeCCCCCCC--CCccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeeeCCCC--CeeceEEEEEccC--
Q 001122 349 LDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSED--PVWQQHFYVPVAH-- 420 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~--~g~~~~~~~~k~~~~~~~sDPYV~V~l~~--~~~~rTkVi~nt~N--PvWNE~F~f~v~~-- 420 (1149)
|+|.|.+|++++..+. .|. ..+||||++.+.+ ...++|.|..+++| |+||++|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~-------------~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~ 68 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGE-------------KMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLP 68 (133)
T ss_pred EEEEEEECcCCcccccccCCc-------------cccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCC
Confidence 8999999999765443 332 1289999999987 34469999999999 9999999998765
Q ss_pred -------------------C---CcEEEEEEEEccC-CCCcceeeEEEeceeeccCC
Q 001122 421 -------------------S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGG 454 (1149)
Q Consensus 421 -------------------~---~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~ 454 (1149)
. ...|.|+|||+|. ..|++||++.+++..+..+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 69 AEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 1 2578999999998 56999999999999888664
No 139
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.81 E-value=3.7e-08 Score=116.67 Aligned_cols=134 Identities=15% Similarity=0.285 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCch
Q 001122 840 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 919 (1149)
Q Consensus 840 ~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s 919 (1149)
.++..+++++|++||++|+||+.+|..+. +..+++.+|.+| +++||+|+|+++... ..
T Consensus 17 ~e~~~~l~~~I~~Ak~~I~i~~yi~~~d~--------------~g~~l~~aL~~a--a~rGV~Vril~D~~g--s~---- 74 (411)
T PRK11263 17 EQYYPRVFEAIAAAQEEILLETFILFEDK--------------VGKQLHAALLAA--AQRGVKVEVLVDGYG--SP---- 74 (411)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEEEEecCc--------------hHHHHHHHHHHH--HHCCCEEEEEEECCC--CC----
Confidence 36889999999999999999998887543 245677777766 469999999998642 11
Q ss_pred hHHHHHHHHHhHhhHHHHHHHHHHHcCCceee-cccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccce
Q 001122 920 TQRILFWQHKTMQMMYETIYKALVEVGLEGAF-SPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 998 (1149)
Q Consensus 920 ~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~-~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iY 998 (1149)
. ....+.+.|.++|+++++ +|.. .+.+. + .. ...-
T Consensus 75 ~-------------~~~~~~~~L~~aGv~v~~~~p~~--~~~~~--~--------------------------~~-~~~R 110 (411)
T PRK11263 75 D-------------LSDEFVNELTAAGVRFRYFDPRP--RLLGM--R--------------------------TN-LFRR 110 (411)
T ss_pred C-------------CCHHHHHHHHHCCeEEEEeCCcc--ccccc--c--------------------------cc-cccC
Confidence 0 012467889999998863 2211 00000 0 00 0014
Q ss_pred eeeEEEEEeCeEEEEcccCcccccCC--CC-CCcceEEEEeCcc
Q 001122 999 VHSKGMIVDDEYVILGSANINQRSME--GT-RDTEIAMGAYQPE 1039 (1149)
Q Consensus 999 VHSKlmIVDD~~viIGSANiN~RSm~--G~-~DsEiav~i~dp~ 1039 (1149)
.|.|++|||+++++|||.||...-+. |. .-.++++.|+.|.
T Consensus 111 ~HrKiiVIDg~~a~vGg~N~~~~~~~~~g~~~w~D~~v~i~Gp~ 154 (411)
T PRK11263 111 MHRKIVVIDGRIAFVGGINYSADHLSDYGPEAKQDYAVEVEGPV 154 (411)
T ss_pred CcceEEEEcCCEEEEcCeEchHhhccccCCCCceEEEEEEECHH
Confidence 79999999999999999999764442 11 1367788888874
No 140
>smart00149 PLCYc Phospholipase C, catalytic domain (part); domain Y. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=98.80 E-value=5.1e-10 Score=109.13 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL~ 350 (1149)
..+.+|+.||.+.|+ +| |++.|+|||||+|..+|. +||||||+ |+.++.++|.+|...
T Consensus 41 ~~~~~~~~~n~~~l~RvY---P~g~R~dSSNy~P~~~W~----~G~QmVAlN~Qt~d~~m~lN~g~F~ 101 (115)
T smart00149 41 KAPTDFVRYNQRQLSRVY---PKGTRVDSSNYNPQVFWN----AGCQMVALNFQTPDKPMQLNQGMFR 101 (115)
T ss_pred HhHHHHHHhccccceEEC---cCCCcCCCCCCCCHHHHc----CCceEeEeecCCCChHHHHHhhHhh
Confidence 456789999999999 99 999999999999999998 99999999 999999998888654
No 141
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.80 E-value=1.5e-08 Score=96.81 Aligned_cols=85 Identities=25% Similarity=0.367 Sum_probs=71.7
Q ss_pred EEEEEEEeeCCCCCC---CCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEE
Q 001122 349 LDIWIYSAKNLPNMD---MFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1149)
Q Consensus 349 L~VtVieAr~L~~~D---~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L 425 (1149)
|+|+|..|+++...+ +.++ +||||.|.+++...+||++ +.||.|||+|.|++. ....+
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~---------------~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEi 61 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKR---------------PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEE 61 (109)
T ss_pred CEEEEEEEecCccccchhhccC---------------CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEE
Confidence 689999999998766 2332 8999999999987789988 589999999999995 57799
Q ss_pred EEEEEEccCCCCcceeeEEEeceeecc
Q 001122 426 HFFVKDSDVVGSELIGTVAIPVEQIYS 452 (1149)
Q Consensus 426 ~~~V~D~D~~~ddfIG~a~IpL~~L~~ 452 (1149)
.|+|||+.....--||...|.+++|..
T Consensus 62 el~VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 62 EVIVYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred EEEEEeCCCCeecceeeehhhHHHHHH
Confidence 999999865555589999999988874
No 142
>PRK05443 polyphosphate kinase; Provisional
Probab=98.79 E-value=3.3e-08 Score=122.94 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=91.2
Q ss_pred HHHHHHHHhhcc-----EEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCc
Q 001122 844 TAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 918 (1149)
Q Consensus 844 ~ayl~aI~~Ar~-----~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~ 918 (1149)
+.+++.|++|.+ .|.|+- |-+++. ..|+.+|.+| +++|++|+|+++..+-
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tl-Yr~~~~----------------s~iv~aL~~A--a~~Gk~V~vlve~kar------ 405 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTL-YRTSKD----------------SPIVDALIEA--AENGKQVTVLVELKAR------ 405 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEE-EEecCC----------------HHHHHHHHHH--HHcCCEEEEEEccCcc------
Confidence 457889999999 898876 444332 2577777776 4689999999998541
Q ss_pred hhHHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccce
Q 001122 919 ATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 998 (1149)
Q Consensus 919 s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iY 998 (1149)
...++. ..++++|.++|+++.|. | ....
T Consensus 406 ----fde~~n-------~~~~~~L~~aGv~V~y~---~--------------------------------------~~~k 433 (691)
T PRK05443 406 ----FDEEAN-------IRWARRLEEAGVHVVYG---V--------------------------------------VGLK 433 (691)
T ss_pred ----ccHHHH-------HHHHHHHHHcCCEEEEc---c--------------------------------------CCcc
Confidence 111221 24678999999998541 0 0247
Q ss_pred eeeEEEEEeCe-------EEEEcccCcccccCCCCCCcceEEEEeCcchh
Q 001122 999 VHSKGMIVDDE-------YVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 999 VHSKlmIVDD~-------~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
+|||+++||++ |+.|||+|+|.||.. .++|+++.+.|++.+
T Consensus 434 ~HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~~--~y~D~~l~t~d~~i~ 481 (691)
T PRK05443 434 THAKLALVVRREGGGLRRYVHLGTGNYNPKTAR--LYTDLSLLTADPEIG 481 (691)
T ss_pred ceeEEEEEEeecCCceeEEEEEcCCCCCcchhh--hccceeEEEeChHHH
Confidence 99999999999 999999999999998 899999999998764
No 143
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.75 E-value=1.5e-09 Score=119.54 Aligned_cols=57 Identities=26% Similarity=0.245 Sum_probs=53.0
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|||||||+|..+|. +||||||+ |+.++.|+|.+|..
T Consensus 196 ~~~~~~v~~N~~~l~RvY---P~G~RvdSSNydP~~~W~----~G~QmVALN~QT~D~~M~LN~G~F 255 (258)
T cd08625 196 KSPMEFVEYNKKQLSRIY---PKGTRVDSSNYMPQLFWN----VGCQMVALNFQTLDLAMQLNMGVF 255 (258)
T ss_pred hCHHHHHHhhhcceeeec---cCCCcCcCCCCCChhHhc----CcceEEEeecCCCCcchhhhcccc
Confidence 456789999999999 99 999999999999999999 99999999 99999999988864
No 144
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.74 E-value=2.1e-08 Score=116.06 Aligned_cols=120 Identities=23% Similarity=0.431 Sum_probs=99.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeece-EEEEEccCC--
Q 001122 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQ-HFYVPVAHS-- 421 (1149)
Q Consensus 345 l~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE-~F~f~v~~~-- 421 (1149)
|.|.|.|+|..|++|+-||.... +.|.||.|.+++... ||.|..+++||.||- =|.|.|.+.
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd--------------~tdafveik~~n~t~-ktdvf~kslnp~wnsdwfkfevddadl 65 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD--------------LTDAFVEIKFANTTF-KTDVFLKSLNPQWNSDWFKFEVDDADL 65 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc--------------cchheeEEEecccce-ehhhhhhhcCCcccccceEEecChhhh
Confidence 46889999999999999986543 379999999999886 999999999999996 588888655
Q ss_pred -CcEEEEEEEEccC-CCCcceeeEEEeceeecc----------CCceeeeeeecCCCCCCCCCCCcEEEEEEe
Q 001122 422 -AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYS----------GGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 422 -~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~----------G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f 482 (1149)
...|.|+++|+|. +.+|-||++.|.+.-|.- |..+.+|||+++.-.. -.|+|.+.++.
T Consensus 66 qdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg---irgeinvivkv 135 (1169)
T KOG1031|consen 66 QDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG---IRGEINVIVKV 135 (1169)
T ss_pred ccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc---ccceeEEEEEE
Confidence 3679999999999 668999999999887652 4567899999986433 34688888774
No 145
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=98.72 E-value=1.6e-09 Score=119.04 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=53.3
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.|+|.+|..
T Consensus 196 ~~~~~~v~~n~~~l~RiY---PkgtRidSSNynP~~~W~----~G~QmVALN~QT~d~~M~LN~G~F 255 (258)
T cd08630 196 EAGNSFVRHNARQLTRVY---PLGLRMNSANYSPQEMWN----SGCQLVALNFQTPGYEMDLNAGRF 255 (258)
T ss_pred HhHHHHHHhhhcccceeC---CCCCcCCCCCCCcHHHhc----CCCeEEEecccCCChhhhhhcccc
Confidence 566789999999999 99 999999999999998888 99999999 99999999999864
No 146
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.72 E-value=2.6e-09 Score=115.10 Aligned_cols=56 Identities=18% Similarity=0.067 Sum_probs=52.1
Q ss_pred CCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
.+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. +||||||+ |+.++.|+|..|..
T Consensus 168 ~~~~fv~~n~~~l~RiY---P~G~RidSSNy~P~~~W~----~G~QmVALN~Qt~d~~M~LN~G~F 226 (229)
T cd08627 168 KGKKFLQYNRRQLSRIY---PKGQRLDSSNYDPLPMWI----CGSQLVALNFQTPDKPMQMNQALF 226 (229)
T ss_pred hHHHHHHhcccceeEeC---CCCCcCcCCCCCchhHhc----cCcEEEEeeccCCCcchhhhcCcc
Confidence 45689999999999 99 999999999999998988 99999999 99999999988864
No 147
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=98.72 E-value=1.7e-09 Score=116.99 Aligned_cols=57 Identities=19% Similarity=0.086 Sum_probs=53.3
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.+..|+|.+|..
T Consensus 167 ~~~~~~v~~n~~~l~RvY---P~g~RvdSSNy~P~~~W~----~G~QmVAlN~Qt~d~~m~lN~g~F 226 (229)
T cd08592 167 QKGKIFLKYNRRQLSRVY---PKGQRVDSSNYDPVPMWN----CGSQMVALNFQTPDKPMQLNQALF 226 (229)
T ss_pred hhHHHHHHhhhhcceeeC---CCCCcCcCCCCCchHHhc----CCceEEEeeccCCChhHHhhcccc
Confidence 577889999999999 99 999999999999999998 99999999 99999999988864
No 148
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=98.71 E-value=2e-09 Score=117.98 Aligned_cols=57 Identities=21% Similarity=0.111 Sum_probs=53.4
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.|+|.+|..
T Consensus 195 ~~~~~~v~~n~r~l~RvY---P~GtRidSSNynP~~~W~----~G~QmVALN~Qt~d~~M~LN~G~F 254 (257)
T cd08595 195 SSGADFVGHTQRFITRIY---PKGTRASSSNYNPQEFWN----VGCQMVALNFQTLGAPMDLQNGKF 254 (257)
T ss_pred HhHHHHHHHhhcCCceeC---cCCCCCCCCCCCcHHHHc----CCCeEEEecccCCChhhhhhcCcc
Confidence 566789999999999 99 999999999999999998 99999999 99999999999864
No 149
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.71 E-value=1.8e-09 Score=118.64 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=53.3
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL~ 350 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|+ +||||||+ |+.++.|+|..|...
T Consensus 199 ~~~~~fv~~N~~~l~RiY---P~G~RvdSSNynP~~~W~----~G~QmVALN~QT~D~~M~LN~G~F~ 259 (261)
T cd08624 199 KASVQFVEYNKRQMSRIY---PKGTRMDSSNYMPQMFWN----VGCQMVALNFQTMDLPMQQNMALFE 259 (261)
T ss_pred HhHHHHHHhchhheeeeC---CCCCcccCcCCCchHHhc----CCCeEEEecccCCChhhhhhccccc
Confidence 455789999999999 99 999999999999999999 99999999 999999999888653
No 150
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=98.71 E-value=2.1e-09 Score=117.40 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=53.8
Q ss_pred cCCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
...+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.|+|.+|..
T Consensus 191 ~~~~~~~v~~N~~~l~RvY---P~G~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~lN~g~F 251 (254)
T cd08633 191 QQKPAQYLRFNQRQLSRIY---PSSYRVDSSNYNPQPFWN----AGCQMVALNYQSEGRMLQLNRAKF 251 (254)
T ss_pred HHCHHHHHHhhhhcccccC---CCCCCCCCCCCCchHHhc----CCCeEEEecccCCCchhHhhcccc
Confidence 3567789999999999 99 999999999999998888 99999999 99999999998864
No 151
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.70 E-value=2e-09 Score=117.95 Aligned_cols=57 Identities=19% Similarity=0.143 Sum_probs=53.0
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|+ +||||||+ |+.++.|+|.+|..
T Consensus 192 ~~~~~~v~~N~~~l~RvY---P~G~RvdSSNynP~~~W~----~G~QmVALN~QT~d~~M~LN~G~F 251 (254)
T cd08628 192 QKPVQLLKYNRKGLTRVY---PKGQRVDSSNYDPFRLWL----CGSQMVALNFQTADKYMQLNHALF 251 (254)
T ss_pred hHHHHHHHHhHhhhhhhC---CCCCcCCCCCCCchHHhc----CCCeEEEeeccCCChhhhhhhhhc
Confidence 456789999999999 99 999999999999999999 99999999 99999999988864
No 152
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=98.70 E-value=1.9e-09 Score=117.97 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=53.3
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|||||||+|+.+|. +||||||+ |+.++.|+|.+|..
T Consensus 192 ~~~~~lv~~n~~~l~RiY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 251 (254)
T cd08596 192 RYPQKLVQHTRCQLLRTY---PAATRIDSSNPNPLIFWL----HGLQLVALNYQTDDLPMHLNAAMF 251 (254)
T ss_pred HCHHHHHHhhhhcceeec---cCCCcCCCCCCCcHHHHh----CCCeEEeecccCCChHHHhhhchh
Confidence 566889999999999 99 999999999999998888 99999999 99999999998864
No 153
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=98.69 E-value=3e-09 Score=116.65 Aligned_cols=57 Identities=23% Similarity=0.106 Sum_probs=53.1
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|||||||+|+.+|. +||||||+ |+.++.|+|.+|..
T Consensus 196 ~~~~~~v~~n~~~l~RiY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 255 (258)
T cd08629 196 ESGNGFVRHNVSCLSRIY---PAGWRTDSSNYSPVEMWN----GGCQIVALNFQTPGPEMDVYLGCF 255 (258)
T ss_pred HhHHHHHHhchhccceeC---CCCCCCCCCCCCchHHhc----CCceEEEecccCCChhHHhhhchh
Confidence 456789999999999 99 999999999999998888 99999999 99999999998864
No 154
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=98.69 E-value=2.4e-09 Score=118.09 Aligned_cols=57 Identities=26% Similarity=0.230 Sum_probs=53.3
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|||||||+|..+|. +||||||+ |+.++.|+|.+|..
T Consensus 198 ~~~~~~v~~n~~~l~RvY---P~G~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~M~lN~g~F 257 (260)
T cd08597 198 EFPEDFVNYNKKFLSRVY---PSPMRVDSSNYNPQDFWN----CGCQIVAMNYQTPGLMMDLNTGKF 257 (260)
T ss_pred HCHHHHHHHhhhcCceeC---cCCCCCCCCCCCchHHhc----CCCeEeeecccCCChhhhhhcccc
Confidence 566889999999999 99 999999999999998888 99999999 99999999998864
No 155
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.68 E-value=3e-09 Score=116.72 Aligned_cols=57 Identities=25% Similarity=0.224 Sum_probs=53.0
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. +||||||+ |+.++.|+|.+|..
T Consensus 196 ~~~~~~v~~N~~~l~RvY---P~G~RvdSSNy~P~~~W~----~G~QmVALN~QT~d~~M~LN~G~F 255 (258)
T cd08623 196 KSPVEFVEYNKMQLSRIY---PKGTRVDSSNYMPQLFWN----AGCQMVALNFQTVDLSMQINMGMY 255 (258)
T ss_pred hCHHHHHHHhhhhceeec---cCCCcccCCCCCChhhhc----CCceEEEeecCCCCcchhhhcccc
Confidence 556789999999999 99 999999999999999999 99999999 99999999988864
No 156
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=98.67 E-value=3.3e-09 Score=114.31 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=53.2
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. +||||||+ |+.++.|+|.+|..
T Consensus 165 ~~~~~~v~~n~~~l~RiY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~g~F 224 (227)
T cd08594 165 QKAAQFLRFNQRQLSRIY---PSAYRIDSSNFNPQPYWN----AGCQLVALNYQTEGRMLQLNRAKF 224 (227)
T ss_pred HHHHHHHHhcccccceeC---CCCCcCcCCCCCchHHhc----CCceEEEecccCCChhhHhhcccc
Confidence 567889999999999 99 999999999999999998 99999999 99999999888854
No 157
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=98.67 E-value=2.8e-09 Score=116.97 Aligned_cols=57 Identities=21% Similarity=0.082 Sum_probs=53.1
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.|+|.+|..
T Consensus 196 ~~~~~~v~~n~~~l~RiY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 255 (258)
T cd08631 196 EAGNEFVQHNTWQLSRVY---PSGLRTDSSNYNPQEMWN----AGCQMVALNFQTAGLEMDLNDGLF 255 (258)
T ss_pred hchHHHHHHHHhcCceeC---cCCCCCCCCCCCcHHHHh----CCCeEeeecccCCChhHHhhcchh
Confidence 456789999999999 99 999999999999998888 99999999 99999999998864
No 158
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=98.66 E-value=3.1e-09 Score=115.84 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=53.7
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL~ 350 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.|+|.+|...
T Consensus 191 ~~~~~~v~~n~~~l~RvY---P~g~RidSSNy~P~~~W~----~G~QmVAlN~Qt~d~~m~LN~g~F~ 251 (253)
T cd08632 191 QKAEQFMTYNQKQLTRIY---PSAYRIDSSNFNPLPYWN----VGCQLVALNYQSEGRMMQLNRAKFM 251 (253)
T ss_pred HhHHHHHHHhhhccceeC---CCCCcCcCCCCCcHHHhc----CCCeEEEecccCCChhHHhhccccc
Confidence 566789999999999 99 999999999999998888 99999999 999999999998653
No 159
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.65 E-value=4e-09 Score=115.69 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=53.5
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL~ 350 (1149)
..+.+|+.||.+.|+ +| |+|.|||||||+|+.+|. +||||||+ |+.++.|+|.+|...
T Consensus 195 ~~~~~~v~~n~~~l~RiY---P~G~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F~ 255 (257)
T cd08626 195 TSAIEFVNYNKRQMSRIY---PKGTRVDSSNYMPQIFWN----AGCQMVSLNFQTPDLGMQLNQGKFE 255 (257)
T ss_pred HHHHHHHHHhhhcCceeC---cCCCCCcCCCCCcHHHhc----CCCeEEEecccCCChhHHhhhcccc
Confidence 456789999999999 99 999999999999998888 99999999 999999999998653
No 160
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=98.62 E-value=5.3e-09 Score=113.32 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=53.3
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. +||||||+ |+.+++|+|.+|..
T Consensus 166 ~~~~~~v~~n~~~l~RvY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 225 (228)
T cd08599 166 EHPTDLIEFTQKNLLRVY---PAGLRITSSNYDPMLAWM----HGAQMVALNMQGYDRPLWLNRGKF 225 (228)
T ss_pred hcHHHHHHHhhccceeec---cCCcccCCCCCCChHHhc----CcceEeeeecCCCChhhhhhcccc
Confidence 567789999999999 99 999999999999999998 99999999 99999999988864
No 161
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.62 E-value=9.5e-09 Score=75.38 Aligned_cols=27 Identities=63% Similarity=1.040 Sum_probs=18.5
Q ss_pred cccccceeEEecCCCCCCCccEEEEEccccCCCCC
Q 001122 662 IYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 696 (1149)
Q Consensus 662 ~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgR 696 (1149)
.++||||++|||++ +|||||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence 47899999999997 9999999999864
No 162
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.61 E-value=5.9e-07 Score=103.27 Aligned_cols=157 Identities=17% Similarity=0.271 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCcccccccccccccccc
Q 001122 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTH 625 (1149)
Q Consensus 546 ~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~ 625 (1149)
-.++|+..|..|++.|||......|.+....+ . .-+.|+++|+++|-|||+||+||-+..-+... ..+.+. .
T Consensus 277 DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~--~fw~iDdaiR~aa~RgV~vR~lvs~~~~~~~~----m~~~L~-S 348 (456)
T KOG3603|consen 277 DLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-H--RFWEIDDAIRRAAVRGVKVRLLVSCWKHSEPS----MFRFLR-S 348 (456)
T ss_pred hHHHHHHHHHHHhhheeeeehhccchheeecC-c--chhhhhHHHHHHhhcceEEEEEEeccCCCCch----HHHHHH-H
Confidence 47999999999999999999888887444444 2 33599999999999999999998321111000 000000 0
Q ss_pred cHHHHHHhhcCCcEEEEc--cCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCCCCCC
Q 001122 626 DEETRRVFKHSSVKVLLC--PRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 703 (1149)
Q Consensus 626 ~~~t~~~l~~~gV~v~l~--p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~ 703 (1149)
-+.....+++..|+|+++ |..... .......+|.|.+|-+. .||+|--|.+.+||-...
T Consensus 349 Lq~l~~~~~~~~iqvk~f~VP~~~~~--------~ip~~Rv~HnKymVTe~---------aayIGTSNws~dYf~~Ta-- 409 (456)
T KOG3603|consen 349 LQDLSDPLENGSIQVKFFIVPQTNIE--------KIPFARVNHNKYMVTES---------AAYIGTSNWSGDYFTSTA-- 409 (456)
T ss_pred HHHhcCccccCceEEEEEEeCCCccc--------cCchhhhccceeEEeec---------ceeeeccCCCccceeccC--
Confidence 000111224566777765 443211 12334679999999997 899999999999884210
Q ss_pred cccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEE-----cCHHHHHHHHHHHHHHHhhc
Q 001122 704 LFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKI-----DGPAAYDVLTNFEERWRKAS 760 (1149)
Q Consensus 704 l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI-----~GPaa~Dl~~~F~qrWn~at 760 (1149)
-+++.| .|+++.+|...|+.+|+..-
T Consensus 410 -------------------------------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Y 440 (456)
T KOG3603|consen 410 -------------------------------GTAIVVRQTPHKGTLVSQLKAVFERDWNSTY 440 (456)
T ss_pred -------------------------------ceEEEEecCCCCCcHHHHHHHHHhhcccccc
Confidence 122222 46799999999999999753
No 163
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=98.58 E-value=8.5e-09 Score=113.17 Aligned_cols=57 Identities=26% Similarity=0.299 Sum_probs=53.0
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. +||||||+ |+.++.|+|.+|..
T Consensus 195 ~~~~~~v~~n~~~l~RvY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~lN~g~F 254 (257)
T cd08591 195 KSPIEFVNYNKRQLSRIY---PKGTRVDSSNYMPQIFWN----AGCQMVALNFQTPDLPMQLNQGKF 254 (257)
T ss_pred HHHHHHHHHhhhcCceeC---cCCCcCcCCCCCcHHHhc----CCCeEEEecCcCCChhHHhhcccc
Confidence 456789999999999 99 999999999999998888 99999999 99999999988864
No 164
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=98.58 E-value=6.1e-09 Score=112.91 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=53.0
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. +||||||+ |+.++.|+|.+|..
T Consensus 169 ~~~~~lv~~n~~~l~RvY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 228 (231)
T cd08598 169 DKRAALDKHNRRHLMRVY---PSGTRISSSNFNPLPFWR----AGVQMVALNWQTYDLGMQLNEAMF 228 (231)
T ss_pred HHHHHHHHHhhhceeeeC---CCCCcCCCCCCCcHHHHh----CCCeEEEecccCCChhhhhhcccc
Confidence 466789999999999 99 999999999999999988 99999999 99999999988864
No 165
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=98.57 E-value=8.3e-09 Score=111.56 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=53.1
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. +||||||+ |+.++.++|.+|..
T Consensus 164 ~~~~~l~~~n~~~l~RvY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~g~F 223 (226)
T cd08558 164 ESPEEFVKYNKRQLSRVY---PKGTRVDSSNYNPQPFWN----AGCQMVALNYQTPDLPMQLNQGKF 223 (226)
T ss_pred HChHHHHHhcccceeEEC---cCCCcCCCCCCCcHHHHh----CCCeEeeecccCCChhhhhhcccc
Confidence 467899999999999 99 999999999999999998 99999999 99999999888854
No 166
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=98.56 E-value=1e-08 Score=112.90 Aligned_cols=57 Identities=23% Similarity=0.055 Sum_probs=53.0
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
..+.+|..||.+.|+ +| |+|.|+|||||+|..+|. +||||||+ |+.++.|+|.+|..
T Consensus 195 ~~~~~lv~~n~~~l~RvY---P~g~RidSSNynP~~~W~----~G~QmVALN~Qt~D~~m~LN~G~F 254 (257)
T cd08593 195 ESGNEFVRHNKRQLSRIY---PAGLRTDSSNYDPQEMWN----VGCQIVALNFQTPGEEMDLNDGLF 254 (257)
T ss_pred HhHHHHHHhhhhccceeC---CCCCcCCCCCCCcHHHHh----CCCeEeeecccCCChHHHhhhchh
Confidence 456789999999999 99 999999999999998888 99999999 99999999998864
No 167
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.54 E-value=8.2e-07 Score=106.28 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCCCCc
Q 001122 841 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE--GVPTGA 918 (1149)
Q Consensus 841 sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Pe--g~p~~~ 918 (1149)
++..+++++|++|+++||||.-||-.+. ++.+++.+|.+|.++++|++|+|++...-. |..+..
T Consensus 35 ~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~--------------~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~~ 100 (451)
T PRK09428 35 DFRETLLEKIASAKKRIYIVALYLEDDE--------------AGREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGAA 100 (451)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEEecCCc--------------hHHHHHHHHHHHHhcCCCcEEEEEEEcccccccccccC
Confidence 6889999999999999999999998654 256889999988888899999999985310 000000
Q ss_pred hhHHHHHHHHHhHhhHHHHHHHHHHHcC--CceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCccc
Q 001122 919 ATQRILFWQHKTMQMMYETIYKALVEVG--LEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFM 996 (1149)
Q Consensus 919 s~~~il~~~~rTm~~~~~si~~~L~~~G--v~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~ 996 (1149)
+ ......++..|.++| +++.+ |.+..+ .+...
T Consensus 101 ~------------~~~~~~~~~~l~~~~~gv~v~~--------f~~p~~--------------------------~~e~~ 134 (451)
T PRK09428 101 A------------SNTNADWYCEMAQEYPGVDIPV--------YGVPVN--------------------------TREAL 134 (451)
T ss_pred C------------CCcCHHHHHHHHHhCCCceEEE--------cCCccc--------------------------cchhh
Confidence 0 001134667787764 76643 211000 00011
Q ss_pred ceeeeEEEEEeCeEEEEcccCcccccCCC----CCCcceEEEEeCcc
Q 001122 997 IYVHSKGMIVDDEYVILGSANINQRSMEG----TRDTEIAMGAYQPE 1039 (1149)
Q Consensus 997 iYVHSKlmIVDD~~viIGSANiN~RSm~G----~~DsEiav~i~dp~ 1039 (1149)
.-.|-|++||||+.++.| ||||+--+.. ..|. .+.|++|.
T Consensus 135 gr~HrKi~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dr--y~~i~g~~ 178 (451)
T PRK09428 135 GVLHLKGFIIDDTVLYSG-ASLNNVYLHQHDKYRYDR--YHLIRNAE 178 (451)
T ss_pred hhceeeEEEECCCEEEec-ccccHHHhcCCcccCcce--EEEEeCch
Confidence 247999999999999999 8999855531 1244 56677775
No 168
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.45 E-value=6.1e-08 Score=115.30 Aligned_cols=89 Identities=27% Similarity=0.406 Sum_probs=78.3
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE------EEeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA------VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~------~~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
+|.|.|+-|+++.+.|.+|. +||||+|++... ...||+|+++|+||+++|+|+|.|...
T Consensus 948 ~L~veVlhA~diipLD~NGl---------------SDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e 1012 (1103)
T KOG1328|consen 948 TLVVEVLHAKDIIPLDSNGL---------------SDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPE 1012 (1103)
T ss_pred chhhhhhccccccccCCCCC---------------CCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCcc
Confidence 68899999999999999997 999999999753 335999999999999999999998643
Q ss_pred -----CcEEEEEEEEccC-CCCcceeeEEEeceeec
Q 001122 422 -----AAEVHFFVKDSDV-VGSELIGTVAIPVEQIY 451 (1149)
Q Consensus 422 -----~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~ 451 (1149)
.+.|.|+|+|+|. ..+||-|++.+.|..+.
T Consensus 1013 ~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1013 PCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 3679999999998 66999999999988876
No 169
>PF00387 PI-PLC-Y: Phosphatidylinositol-specific phospholipase C, Y domain This entry is for the whole phospholipase C protein; InterPro: IPR001711 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), an eukaryotic intracellular enzyme, plays an important role in signal transduction processes [] (see IPR001192 from INTERPRO). It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as 'X-box' (see IPR000909 from INTERPRO) and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. At the C-terminal of the Y-box, there is a C2 domain (see IPR000008 from INTERPRO) possibly involved in Ca-dependent membrane attachment.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0006629 lipid metabolic process, 0007165 signal transduction, 0035556 intracellular signal transduction; PDB: 3OHM_B 2FJU_B 2ZKM_X 3QR1_D 3QR0_A 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=98.39 E-value=8.5e-09 Score=101.31 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=39.8
Q ss_pred CCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece
Q 001122 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG 347 (1149)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~G 347 (1149)
.+.+|+.||.+.++ +| |++.|+|||||+|..+|. +||||||+ |+.+..|+|..|
T Consensus 44 ~~~~l~~~~~~~l~Rvy---P~~~R~~SsN~~P~~~W~----~G~Q~vALN~Qt~d~~m~ln~g 100 (118)
T PF00387_consen 44 HPSELVEHNKRHLVRVY---PSGTRIDSSNFNPLPFWN----CGCQMVALNFQTPDEPMQLNQG 100 (118)
T ss_dssp CHHHHHHHHHHSEEEEE-----TT-TT-----THHHHT----TT-SEEEB-TTS-SHHHHHHHH
T ss_pred ccchHHHhcccceEEec---CCccccCCCCCChHHHhh----ccCccceeeccCCChhHHHHHh
Confidence 46789999999999 99 999999999999999998 99999999 999999886665
No 170
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.34 E-value=4e-07 Score=67.04 Aligned_cols=26 Identities=54% Similarity=0.700 Sum_probs=24.5
Q ss_pred ceeeeEEEEEeCeEEEEcccCccccc
Q 001122 997 IYVHSKGMIVDDEYVILGSANINQRS 1022 (1149)
Q Consensus 997 iYVHSKlmIVDD~~viIGSANiN~RS 1022 (1149)
...|+|+||||+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 47899999999999999999999987
No 171
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.18 E-value=7.2e-06 Score=97.96 Aligned_cols=135 Identities=22% Similarity=0.306 Sum_probs=95.0
Q ss_pred HHHHHHHHHhhcceEEEE-EeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCccccccccccccccccc
Q 001122 548 YDICNAISQAQRLIYITG-WSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHD 626 (1149)
Q Consensus 548 ~al~eAI~~Ar~sI~I~~-W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~ 626 (1149)
..++++|.+|+++|+|+. |. +. +..+.++|+.++++||+|+|++ ++.+.... .......
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf-------~~------~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~------~~~~~~~ 332 (438)
T COG1502 273 RLLLKAINSARESILIATPYF-------VP------DRELLAALKAAARRGVDVRIII-PSLGANDS------AIVHAAY 332 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCc-------CC------CHHHHHHHHHHHhcCCEEEEEe-CCCCCCCh------HHHHHHH
Confidence 679999999999999998 63 32 2578899999999999999998 63221100 0000001
Q ss_pred HHHHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCCCCCCccc
Q 001122 627 EETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFR 706 (1149)
Q Consensus 627 ~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~~ 706 (1149)
......+...|+++..++. + ...|.|++|||++ +++||+.|+...-+..
T Consensus 333 ~~~~~~l~~~gv~i~~~~~--------------g--~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~l------- 381 (438)
T COG1502 333 RAYLKELLEAGVKVYEYPG--------------G--AFLHSKVMIIDDR--------TVLVGSANLDPRSLRL------- 381 (438)
T ss_pred HHHHHHHHHhCCEEEEecC--------------C--CcceeeEEEEcCC--------EEEEeCCcCCHhHHHH-------
Confidence 2234445678888865543 0 2479999999996 9999999998853310
Q ss_pred ccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHHHHHHHHhh
Q 001122 707 TLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKA 759 (1149)
Q Consensus 707 ~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~F~qrWn~a 759 (1149)
| -.+.+.|+.+ .+.++...|...|...
T Consensus 382 -----------N---------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 382 -----------N---------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred -----------h---------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 1 2567888888 7899999999777654
No 172
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.99 E-value=9.2e-06 Score=97.78 Aligned_cols=105 Identities=19% Similarity=0.370 Sum_probs=81.1
Q ss_pred CCcEEEEEECCEE---EeeeeeeeCCCCCeeceEEEEEccCC----------------CcEEEEEEEE-ccC-CCCccee
Q 001122 383 SDPYVTIAVAGAV---VGRTFVISNSEDPVWQQHFYVPVAHS----------------AAEVHFFVKD-SDV-VGSELIG 441 (1149)
Q Consensus 383 sDPYV~V~l~~~~---~~rTkVi~nt~NPvWNE~F~f~v~~~----------------~~~L~~~V~D-~D~-~~ddfIG 441 (1149)
+||||+|...+.. ..+|+++++|.||.|||.|.|.+... ...|++++|+ .+. .+++|+|
T Consensus 151 ~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlG 230 (800)
T KOG2059|consen 151 CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLG 230 (800)
T ss_pred CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhce
Confidence 8999999986522 24999999999999999999987644 2457888887 444 4589999
Q ss_pred eEEEeceeeccCCceeeeeeecCC-CCCC---CCCCCcEEEEEEeecccc
Q 001122 442 TVAIPVEQIYSGGKVEGTYPVLNG-SGKP---CKPGATLTLSIQYTPMER 487 (1149)
Q Consensus 442 ~a~IpL~~L~~G~~~~~W~~L~~~-~gk~---~~~~g~L~L~l~f~p~~~ 487 (1149)
++.+|+..+......+.||-|... +|+. -+..|.++|.+.|+...-
T Consensus 231 evrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V 280 (800)
T KOG2059|consen 231 EVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV 280 (800)
T ss_pred eEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence 999999998866667899999753 2332 245678999999976544
No 173
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=97.91 E-value=4.7e-06 Score=61.33 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=18.0
Q ss_pred ceeeeEEEEEeCeEEEEcccCccccc
Q 001122 997 IYVHSKGMIVDDEYVILGSANINQRS 1022 (1149)
Q Consensus 997 iYVHSKlmIVDD~~viIGSANiN~RS 1022 (1149)
...|+|++||||++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 46899999999999999999999875
No 174
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.75 E-value=5.2e-05 Score=74.99 Aligned_cols=112 Identities=25% Similarity=0.355 Sum_probs=76.2
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC---CEEEeeeeeeeCCCCCeeceEEEEEcc------
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---GAVVGRTFVISNSEDPVWQQHFYVPVA------ 419 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~---~~~~~rTkVi~nt~NPvWNE~F~f~v~------ 419 (1149)
|.|.|++|.||+..-..-. ..-....-...++.++||+|.+. +.+..+|+++.++..|.+|-+|+|+|.
T Consensus 1 lsv~I~RA~GLqaAA~~la--~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~ 78 (143)
T cd08683 1 LSVQIHRASGLQAAARALA--EQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRN 78 (143)
T ss_pred CeEEeehhhhHHHHHHHHh--hhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcC
Confidence 4688899988863210000 00000000012347999999963 444459999999999999999999976
Q ss_pred --CC--------CcEEEEEEEEccC-----------CCCcceeeEEEeceeecc-CCceeeeeee
Q 001122 420 --HS--------AAEVHFFVKDSDV-----------VGSELIGTVAIPVEQIYS-GGKVEGTYPV 462 (1149)
Q Consensus 420 --~~--------~~~L~~~V~D~D~-----------~~ddfIG~a~IpL~~L~~-G~~~~~W~~L 462 (1149)
.. .+.+.|+||+... .+|-+||.+.||+.+|.. ...+.+||++
T Consensus 79 ~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 79 SGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 21 2578999998765 235589999999999884 3457899985
No 175
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.65 E-value=0.0099 Score=68.48 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHh--hcCCcEEEEEecCC-Ccccccccccc
Q 001122 543 HGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS--QEGVRVLLLVWDDP-TSRSILGYKMD 619 (1149)
Q Consensus 543 ~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA--~rGVkVrILvwD~~-gs~~~~g~k~~ 619 (1149)
|.++|+.+...|.+||++|+|+.- ||=. ....|.+.|..+. +.-.+|.||+ |.. +.+...+...
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~lasL------YlG~-----~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~~s- 103 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLASL------YLGK-----LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNSCS- 103 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeeee------ccch-----hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcccch-
Confidence 447899999999999999999975 2311 4467777777764 4579999997 753 3222211100
Q ss_pred cccccccHHHHHHhhcCCcEEEEc--cCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCC
Q 001122 620 GVMQTHDEETRRVFKHSSVKVLLC--PRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRY 697 (1149)
Q Consensus 620 g~~~t~~~~t~~~l~~~gV~v~l~--p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRw 697 (1149)
|.......+++ ...|++.++ |...+.....+..+..-.....|-|+.-+|++ ..+-|.|+.++|+
T Consensus 104 --~llp~~l~kkf--~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanls~dyf 170 (469)
T KOG3964|consen 104 --ALLPVWLGKKF--PERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANLSNDYF 170 (469)
T ss_pred --hhchHHHhhhh--hhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccchhhhh
Confidence 00000011111 123555554 32222221111111112246789999999994 5788999999866
Q ss_pred C
Q 001122 698 D 698 (1149)
Q Consensus 698 D 698 (1149)
.
T Consensus 171 T 171 (469)
T KOG3964|consen 171 T 171 (469)
T ss_pred c
Confidence 3
No 176
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.51 E-value=5.4e-05 Score=94.25 Aligned_cols=121 Identities=20% Similarity=0.237 Sum_probs=92.2
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEe-eeeeeeCCCCCeeceEEEEEccCC-CcEE
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVG-RTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~-rTkVi~nt~NPvWNE~F~f~v~~~-~~~L 425 (1149)
..+|.|.+|-+|...|.+|. +||||+|.++++... ++..+.+++||++++.|.+.+.-+ +..+
T Consensus 614 LvrVyvv~A~~L~p~D~ng~---------------adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l 678 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGD---------------ADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDL 678 (1105)
T ss_pred eEEEEEEEeeeccccCCCCC---------------cCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcc
Confidence 36799999999999999997 899999999987653 788899999999999999988766 4789
Q ss_pred EEEEEEccCCC-CcceeeEEEeceeeccCCceeeeeeecCC-CCCCCCCCCcEEEEEEeeccccccccc
Q 001122 426 HFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNG-SGKPCKPGATLTLSIQYTPMERLSFYH 492 (1149)
Q Consensus 426 ~~~V~D~D~~~-ddfIG~a~IpL~~L~~G~~~~~W~~L~~~-~gk~~~~~g~L~L~l~f~p~~~d~~~~ 492 (1149)
.++|+|+|..+ |+.||+..|.++ .+|+...+. .|.. ..-......+++.++.....|.
T Consensus 679 ~v~vyd~D~~~~d~~iget~iDLE--------nR~~T~~~a~cgla-q~y~v~g~n~W~d~~~ps~iL~ 738 (1105)
T KOG1326|consen 679 IVEVYDHDLEAQDEKIGETTIDLE--------NRWLTRHRARCGLA-QTYCVSGANIWRDRMDPSQILK 738 (1105)
T ss_pred eeEEEEeecccccchhhceehhhh--------hcccCcCCcccCcc-ceeeeeccccccCccCHHHHHH
Confidence 99999999955 999999999876 256665543 2332 2223444555555555555544
No 177
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=3.4e-05 Score=86.33 Aligned_cols=128 Identities=18% Similarity=0.178 Sum_probs=90.6
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEE--ccCC
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVP--VAHS 421 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~--v~~~ 421 (1149)
.|+++|..|++|+.||+.+. .|||++..+.. ....||++..+++||.|||+-... ..+.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~---------------~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~ 158 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGL---------------ADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDD 158 (362)
T ss_pred hcceeechhcccchhhhhhh---------------cchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccch
Confidence 48999999999999999987 79999999853 111388999999999999965544 3333
Q ss_pred --CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCc--eeeeeeecCC----CCCCCCCCCcEEEEEEeeccccccc
Q 001122 422 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGK--VEGTYPVLNG----SGKPCKPGATLTLSIQYTPMERLSF 490 (1149)
Q Consensus 422 --~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~--~~~W~~L~~~----~gk~~~~~g~L~L~l~f~p~~~d~~ 490 (1149)
...+++.|.|++. ..++++|+..+++..|.+... ...|+.-.-+ +.......|+|.+++.|........
T Consensus 159 ~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~ 236 (362)
T KOG1013|consen 159 THLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLI 236 (362)
T ss_pred hhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceE
Confidence 2567888888887 458899999999988875422 2233322111 1111245678899998877665443
No 178
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.47 E-value=0.0013 Score=82.33 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=84.6
Q ss_pred HHHHHHHHhhcc-----EEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCc
Q 001122 844 TAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 918 (1149)
Q Consensus 844 ~ayl~aI~~Ar~-----~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~ 918 (1149)
...++.|++|.+ .|.|+- |-+.+. ..|+.+|.+| +++|++|.|++-...-.. ++.
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tl-Yr~~~~----------------s~ii~aL~~A--a~~Gk~V~v~veLkArfd-e~~ 401 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTL-YRTSKD----------------SPIIDALIEA--AENGKEVTVVVELKARFD-EEA 401 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEE-EEecCC----------------cHHHHHHHHH--HHcCCEEEEEEEehhhcc-chh
Confidence 568889999998 899976 555432 1577777776 468999999998543111 111
Q ss_pred hhHHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccce
Q 001122 919 ATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 998 (1149)
Q Consensus 919 s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iY 998 (1149)
+ + .+.++|.++|+++.|. + ....
T Consensus 402 n----i------------~wa~~le~aG~~viyg---------~--------------------------------~~~k 424 (672)
T TIGR03705 402 N----I------------RWARRLEEAGVHVVYG---------V--------------------------------VGLK 424 (672)
T ss_pred h----H------------HHHHHHHHcCCEEEEc---------C--------------------------------CCee
Confidence 1 1 2456899999988641 1 0247
Q ss_pred eeeEEEEEeC-------eEEEEcccCcccccCCCCCCcceEEEEeCcchh
Q 001122 999 VHSKGMIVDD-------EYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 999 VHSKlmIVDD-------~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
+|||+|+||. .++.||+.|+|...-. .-+++++...+++.+
T Consensus 425 ~H~K~~li~r~~~~~~~~y~~igTgN~n~~ta~--~y~D~~l~t~~~~i~ 472 (672)
T TIGR03705 425 THAKLALVVRREGGELRRYVHLGTGNYHPKTAR--LYTDLSLFTADPEIG 472 (672)
T ss_pred eeeEEEEEEEeeCCceEEEEEecCCCCCCcccc--cccceeEEEeChHHH
Confidence 8999999997 4799999999999765 568888887776543
No 179
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.00033 Score=83.18 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=79.0
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeeeCCCCCeeceEEEEEccCC
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~------~~~~rTkVi~nt~NPvWNE~F~f~v~~~ 421 (1149)
.++|+|+.|.+|+ -...|. -.|||.|.+-| ++...|+.+.|++.|.+||+|+|.+...
T Consensus 1126 kvtvkvvaandlk-wqtsgm---------------FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e 1189 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLK-WQTSGM---------------FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNE 1189 (1283)
T ss_pred eEEEEEEeccccc-chhccc---------------cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccC
Confidence 3689999999997 222222 47999999843 4445889999999999999999998644
Q ss_pred ----CcEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeeec
Q 001122 422 ----AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 ----~~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L~ 463 (1149)
.-.|.|.|+|+.-- .|..+|.+.++|.++...+.-..|++|.
T Consensus 1190 ~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1190 GGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLG 1236 (1283)
T ss_pred CCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeecc
Confidence 25799999998864 4779999999999998766667899993
No 180
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.41 E-value=0.00011 Score=92.24 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=82.4
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEE
Q 001122 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVP 417 (1149)
Q Consensus 342 ~~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~ 417 (1149)
+-...|+|.|-|.-||+|.-.. .|. .+||||+.++-. +...||+|+++|.||.+||.....
T Consensus 1519 IsY~~~~LtImV~H~K~L~~Lq-dg~--------------~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~ 1583 (1639)
T KOG0905|consen 1519 ISYNNGTLTIMVMHAKGLALLQ-DGQ--------------DPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYD 1583 (1639)
T ss_pred EEEcCceEEEEhhhhccccccc-CCC--------------CCCcceeEEecCCchHhhhhhhccccccCCCchhhheeec
Confidence 3456789999999999995221 122 289999999942 233499999999999999987765
Q ss_pred ---ccCC-CcEEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeeee
Q 001122 418 ---VAHS-AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 418 ---v~~~-~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~~W~~L 462 (1149)
.... .+.|.+.||..+. ..+.|+|.++|+|.++.......+||.|
T Consensus 1584 g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1584 GFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred CCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 3222 3789999998876 5588999999999998866656699999
No 181
>PF13918 PLDc_3: PLD-like domain
Probab=97.35 E-value=0.00069 Score=71.20 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHh-hcCCcEEEEE
Q 001122 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS-QEGVRVLLLV 604 (1149)
Q Consensus 546 ~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA-~rGVkVrILv 604 (1149)
--++|+..|++|+++|||+-....|.+..- . ...-...|+++|++|| +|||+||+||
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~~~~-~-~~~YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTSRYS-K-PNRYWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCeeecC-C-CCCcchhHHHHHHHHHHHcCCeEEEEE
Confidence 368999999999999999999888854322 2 1224578999999987 8999999998
No 182
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.00024 Score=79.83 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=76.3
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEccCCC-
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHSA- 422 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v~~~~- 422 (1149)
-|.|+|+++..|..+|.+|. +||||.+.+.. ...+||.+.+++.||++||+|.|.+.+..
T Consensus 234 ~l~vt~iRc~~l~ssDsng~---------------sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL 298 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGY---------------SDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL 298 (362)
T ss_pred ceEEEEEEeeeeeccccCCC---------------CCccceeecCCCcchhhcccCcchhccCCccccccccccCCccch
Confidence 48899999999999999887 99999999852 22359999999999999999999986552
Q ss_pred --cEEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeeee
Q 001122 423 --AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 423 --~~L~~~V~D~D~~-~ddfIG~a~IpL~~L~~G~~~~~W~~L 462 (1149)
..+.|.|||++.. +.+++|-+...+ ...+.....|+..
T Consensus 299 a~~kv~lsvgd~~~G~s~d~~GG~~~g~--~rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 299 AYKKVALSVGDYDIGKSNDSIGGSMLGG--YRRGEVHKHWGRC 339 (362)
T ss_pred hcceEEEeecccCCCcCccCCCcccccc--cccchhhcCcccc
Confidence 6789999999985 688888654433 2334445556544
No 183
>PLN02964 phosphatidylserine decarboxylase
Probab=97.11 E-value=0.0004 Score=86.10 Aligned_cols=102 Identities=15% Similarity=0.240 Sum_probs=77.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCC-c
Q 001122 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-A 423 (1149)
Q Consensus 345 l~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~-~ 423 (1149)
..|.+.|+|++|+ |++ .|+|..+-.-|.++.||.+.++|.||+|||+..|.|.... .
T Consensus 52 ~~~~~~~~~~~~~----~~~------------------~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~ 109 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF------------------KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPH 109 (644)
T ss_pred ccCeEEEEeehhh----hcc------------------CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcc
Confidence 4578999999997 443 4777655554555569999999999999999888886543 4
Q ss_pred EEEEEEEEccC-CCCcceeeEEEeceeeccCCcee--eeeeecCCCCC
Q 001122 424 EVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVE--GTYPVLNGSGK 468 (1149)
Q Consensus 424 ~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~G~~~~--~W~~L~~~~gk 468 (1149)
..+|.|+|.+. ..++++|.+.+++.++...+..+ .-|.++++++.
T Consensus 110 ~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgd 157 (644)
T PLN02964 110 LARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSS 157 (644)
T ss_pred eEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCC
Confidence 56999999998 56899999999988887543322 23778887764
No 184
>PLN02866 phospholipase D
Probab=97.09 E-value=0.0015 Score=83.51 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEec
Q 001122 840 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIP 908 (1149)
Q Consensus 840 ~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP 908 (1149)
.....+++++|.+||++|||+.=.|-+.-+.+... ..-++..+...|.+| |++||+|+||+=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~-----~D~~g~RL~~lL~rK--AkrGVkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPF-----HDHESSRLDSLLEAK--AKQGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecC-----CCchHHHHHHHHHHH--HHCCCEEEEEEE
Confidence 36889999999999999999543222221111100 001244566666664 578999999853
No 185
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.04 E-value=0.00051 Score=50.62 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=22.5
Q ss_pred ccccceeEEecCCCCCCCccEEEEEccccCCCC
Q 001122 663 YTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDG 695 (1149)
Q Consensus 663 ~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dg 695 (1149)
.++|+|++|||++ .+||||.|++..
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~~ 27 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDGR 27 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCCC
Confidence 4689999999996 999999999874
No 186
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.93 E-value=0.0038 Score=70.19 Aligned_cols=161 Identities=20% Similarity=0.236 Sum_probs=94.5
Q ss_pred cceeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHH
Q 001122 514 GGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSK 593 (1149)
Q Consensus 514 Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~k 593 (1149)
-.+|++|..- |..+.|.| =+.+-+.|.+|++-|-|..= ++.| ..-|.|||.++
T Consensus 118 ~Tr~~vy~qP--p~~~~p~I-------------KE~vR~~I~~A~kVIAIVMD-------~FTD-----~dIf~DLleAa 170 (284)
T PF07894_consen 118 VTRATVYFQP--PKDGQPHI-------------KEVVRRMIQQAQKVIAIVMD-------VFTD-----VDIFCDLLEAA 170 (284)
T ss_pred CceEEEEeCC--CCCCCCCH-------------HHHHHHHHHHhcceeEEEee-------cccc-----HHHHHHHHHHH
Confidence 3678888754 12333443 46788899999999998864 3333 25677777666
Q ss_pred hhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEec
Q 001122 594 SQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVD 673 (1149)
Q Consensus 594 A~rGVkVrILvwD~~gs~~~~g~k~~g~~~t~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD 673 (1149)
-+|||-||||+ |......++. |...-.-....+ .|++|+..... .+.......+...-++|+++||
T Consensus 171 ~kR~VpVYiLL-D~~~~~~Fl~------Mc~~~~v~~~~~--~nmrVRsv~G~-----~y~~rsg~k~~G~~~eKF~lvD 236 (284)
T PF07894_consen 171 NKRGVPVYILL-DEQNLPHFLE------MCEKLGVNLQHL--KNMRVRSVTGC-----TYYSRSGKKFKGQLKEKFMLVD 236 (284)
T ss_pred HhcCCcEEEEe-chhcChHHHH------HHHHCCCChhhc--CCeEEEEecCC-----eeecCCCCeeeCcccceeEEEe
Confidence 69999999998 8765432211 000000001112 34444432110 0100001123457899999999
Q ss_pred CCCCCCCccEEEEEccccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHH
Q 001122 674 ADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFE 753 (1149)
Q Consensus 674 ~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~ 753 (1149)
++ .+..|..-+++--. .-| +-+-..++|.+|....+-|.
T Consensus 237 ~~--------~V~~GSYSFtWs~~--~~~-------------------------------r~~~~~~tGq~Ve~FD~EFR 275 (284)
T PF07894_consen 237 GD--------KVISGSYSFTWSSS--RVH-------------------------------RNLVTVLTGQIVESFDEEFR 275 (284)
T ss_pred cc--------cccccccceeeccc--ccc-------------------------------cceeEEEeccccchHhHHHH
Confidence 97 77888765554211 111 23677899999999888887
Q ss_pred HHH
Q 001122 754 ERW 756 (1149)
Q Consensus 754 qrW 756 (1149)
.-.
T Consensus 276 ~Ly 278 (284)
T PF07894_consen 276 ELY 278 (284)
T ss_pred HHH
Confidence 654
No 187
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.001 Score=75.93 Aligned_cols=109 Identities=18% Similarity=0.225 Sum_probs=83.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEccC
Q 001122 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 345 l~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v~~ 420 (1149)
-.|.|+|.|++|++|..+...+. .++|||+|++-. ....+|+...+|..|.+-++..|.-..
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~--------------~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp 332 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKS--------------LPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP 332 (405)
T ss_pred ccCceeEEEEecccccccCCccc--------------ccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC
Confidence 34789999999999975432221 289999999843 122489999999999777788888777
Q ss_pred CCcEEEEEEEE-ccC-CCCcceeeEEEeceeeccCC-ceeeeeeecCCCC
Q 001122 421 SAAEVHFFVKD-SDV-VGSELIGTVAIPVEQIYSGG-KVEGTYPVLNGSG 467 (1149)
Q Consensus 421 ~~~~L~~~V~D-~D~-~~ddfIG~a~IpL~~L~~G~-~~~~W~~L~~~~g 467 (1149)
+...|.++||- +.. ..+.|+|.+.|-+.+|--.. ...+||+|+...-
T Consensus 333 ~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 333 PGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred CccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence 77899999984 333 34679999999999988655 6789999986543
No 188
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=96.14 E-value=0.82 Score=53.04 Aligned_cols=137 Identities=19% Similarity=0.215 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhh-----cceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCcccccccccc
Q 001122 545 KCWYDICNAISQAQ-----RLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMD 619 (1149)
Q Consensus 545 ~~f~al~eAI~~Ar-----~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~ 619 (1149)
+.|+.+++-|++|- .+|.|+-| |-+ ....|.++|++||+.|-+|.++| . ..++ ++
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLY---------R~a---~~S~iv~aLi~AA~nGK~Vtv~v-E-LkAR------FD 77 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLY---------RVA---SNSPIVNALIEAAENGKQVTVLV-E-LKAR------FD 77 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEES---------SS----TT-HHHHHHHHHHHTT-EEEEEE-S-TTSS------ST
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEE---------ecC---CCCHHHHHHHHHHHcCCEEEEEE-E-Eecc------cc
Confidence 57888999999884 36777766 432 34789999999999999999998 2 1111 11
Q ss_pred cccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCC
Q 001122 620 GVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 699 (1149)
Q Consensus 620 g~~~t~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt 699 (1149)
.. .+-.+.+.|+.+|++|..--+ .+--|-|+++|=.+..+ .-+..+++|-=|....
T Consensus 78 Ee---~Ni~Wa~~Le~aGv~ViyG~~----------------glKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe~---- 133 (352)
T PF13090_consen 78 EE---NNIHWAKRLEEAGVHVIYGVP----------------GLKVHAKICLIVRREGG-GLRRYAHLGTGNYNEK---- 133 (352)
T ss_dssp TC---CCCCCCHHHHHCT-EEEE--T----------------T-EE--EEEEEEEEETT-EEEEEEEEESS-SSTT----
T ss_pred HH---HHhHHHhhHHhcCeEEEcCCC----------------ChhheeeEEEEEEEeCC-cEEEEEEEcCCCcCcc----
Confidence 11 111345678899999986321 13369999998654322 2335777776555442
Q ss_pred CCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHHHHH
Q 001122 700 PHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEE 754 (1149)
Q Consensus 700 ~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~F~q 754 (1149)
+ ..-+-|+.+.-.-+ .+.|+...|..
T Consensus 134 ----------------------------T-Ar~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 134 ----------------------------T-ARIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp ----------------------------H-CCCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred ----------------------------c-hhheecceeecCCHHHHHHHHHHHHH
Confidence 0 12356888887777 68999998853
No 189
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.10 E-value=0.025 Score=63.68 Aligned_cols=131 Identities=19% Similarity=0.201 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchh
Q 001122 841 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 920 (1149)
Q Consensus 841 sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~ 920 (1149)
+|.+...++|++|++-|=|..--|.. .+|..-|.+|.. +|+|-||||+... +.
T Consensus 134 ~IKE~vR~~I~~A~kVIAIVMD~FTD------------------~dIf~DLleAa~-kR~VpVYiLLD~~--------~~ 186 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKVIAIVMDVFTD------------------VDIFCDLLEAAN-KRGVPVYILLDEQ--------NL 186 (284)
T ss_pred CHHHHHHHHHHHhcceeEEEeecccc------------------HHHHHHHHHHHH-hcCCcEEEEechh--------cC
Confidence 69999999999999999999988873 467777877743 7899999999862 22
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCChhhhccccCcccceee
Q 001122 921 QRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVH 1000 (1149)
Q Consensus 921 ~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~re~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iYVH 1000 (1149)
+. +.+.-.+.++.... +-+++-|-.- +. . -.++..+.+..-++
T Consensus 187 ~~---------------Fl~Mc~~~~v~~~~-------~~nmrVRsv~-G~-----~---------y~~rsg~k~~G~~~ 229 (284)
T PF07894_consen 187 PH---------------FLEMCEKLGVNLQH-------LKNMRVRSVT-GC-----T---------YYSRSGKKFKGQLK 229 (284)
T ss_pred hH---------------HHHHHHHCCCChhh-------cCCeEEEEec-CC-----e---------eecCCCCeeeCccc
Confidence 22 22233344543321 1112211110 00 0 00111223456799
Q ss_pred eEEEEEeCeEEEEcccCcccccCCCCCCcceEEEEeC
Q 001122 1001 SKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQ 1037 (1149)
Q Consensus 1001 SKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~d 1037 (1149)
.|.||||.+.|+-||--+..-|-. .|.-+...+..
T Consensus 230 eKF~lvD~~~V~~GSYSFtWs~~~--~~r~~~~~~tG 264 (284)
T PF07894_consen 230 EKFMLVDGDKVISGSYSFTWSSSR--VHRNLVTVLTG 264 (284)
T ss_pred ceeEEEecccccccccceeecccc--cccceeEEEec
Confidence 999999999999999999988776 56666666533
No 190
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=95.95 E-value=0.0025 Score=79.95 Aligned_cols=99 Identities=23% Similarity=0.287 Sum_probs=76.0
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEcc---------
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVA--------- 419 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~--------- 419 (1149)
|++.|+.|+.|..+|..+. +|||+.|.+-++.. .|.++.+|+||.||++..|.-.
T Consensus 208 lR~yiyQar~L~a~dk~~~---------------sdp~a~v~f~~qs~-~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~ 271 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDE---------------SDPDAAVEFCGQSK-ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLV 271 (1105)
T ss_pred hHHHHHHHHhhcCCCcccC---------------CCchhhhhcccccc-eeEeecCcCCCCccceeeccceeecCccchh
Confidence 6788888888887776555 89999999988774 8999999999999999888621
Q ss_pred -CCCcEEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeeeecC
Q 001122 420 -HSAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1149)
Q Consensus 420 -~~~~~L~~~V~D~D~~~-ddfIG~a~IpL~~L~~G~~~~~W~~L~~ 464 (1149)
.....+.|+|+|.|..+ ++|+|+......-+.. ...-.|+++..
T Consensus 272 ~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r 317 (1105)
T KOG1326|consen 272 LKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR 317 (1105)
T ss_pred hcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeec
Confidence 11256889999999854 8899998765443332 23457999963
No 191
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=95.81 E-value=0.0016 Score=73.72 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=48.1
Q ss_pred CCcccCCCCCcc-cCCcccCCCC---------cCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001122 289 GGFYGYPNDSFS-SYPERAYLGM---------IDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 289 ~~~~~~~~~~~~-~~~~~~~~~r---------~dSSn~~p~~~~~~~h~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1149)
.+|..|+++.|+ +| |++.| +|||||+|..+|...+ .||||||+ |+.++++.|..|.+
T Consensus 203 ~~~~~~n~~~l~~ny---psgtr~~~~~~~~a~~snn~~p~~~w~~~~-~g~qiValdfqt~~~~~~ln~~~f 271 (274)
T cd00137 203 VQFVDYNKNQLSRNY---PSGTSGGTAWYYYAMDSNNYMPQMFWNANP-AGCGIVILDFQTMDLPMQQYMAVI 271 (274)
T ss_pred HHHHhcCcceEEEEc---cCccCCCCcchhhHhhcCccChHHHhcccc-CCceEEEeeCcCCCccHHHHhhhh
Confidence 457888888999 99 99999 9999999999999443 39999999 99988888766643
No 192
>PLN02352 phospholipase D epsilon
Probab=95.68 E-value=0.037 Score=69.74 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCC-----CchHHHHHHHHHHH--hhcCCcEEEEE
Q 001122 544 GKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-----PALDCTLGELLRSK--SQEGVRVLLLV 604 (1149)
Q Consensus 544 ~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~-----~~~g~~L~dlL~~k--A~rGVkVrILv 604 (1149)
.+...+.++||++|||.|||+.=-|-...+.|..+. --++..|.+.|.+| +.++-+|+|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 356899999999999999998632322222333221 12455677777776 45678888887
No 193
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.58 E-value=0.012 Score=67.87 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=75.6
Q ss_pred CCcEEEEEEC----CEEEeeeeeeeCCCCCeeceEEEEEccCC------------CcEEEEEEEEccC--CCCcceeeEE
Q 001122 383 SDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAHS------------AAEVHFFVKDSDV--VGSELIGTVA 444 (1149)
Q Consensus 383 sDPYV~V~l~----~~~~~rTkVi~nt~NPvWNE~F~f~v~~~------------~~~L~~~V~D~D~--~~ddfIG~a~ 444 (1149)
.|-||++++. .....+|.||++|..|.++|.|.+.+... ..-+.|+|+.+.. -+|.|+|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 5778887763 22224999999999999999999988652 1348899998876 3588999999
Q ss_pred EeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEee
Q 001122 445 IPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 445 IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~ 483 (1149)
|.++-|...-.+...++|.| |+. .-||+|.++++..
T Consensus 468 ikle~Len~cei~e~~~l~D--GRK-~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKD--GRK-AVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceeccc--ccc-ccCCeeEEEEEEe
Confidence 99998887777788899964 443 2467898888864
No 194
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=95.51 E-value=0.81 Score=56.50 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=64.4
Q ss_pred cchhHHHHHHHHHHHHhhc-----ceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCcccccc
Q 001122 541 YVHGKCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILG 615 (1149)
Q Consensus 541 y~~~~~f~al~eAI~~Ar~-----sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g 615 (1149)
|.|=+.|+.+.+.|++|-. .|-++ |.|-+. ...|.++|.+||+.|-+|-+|| . ..++
T Consensus 348 hHPYeSF~~Vv~fl~qAA~DP~VLAIKqT---------LYRt~~---dSpIV~ALi~AA~nGKqVtvlV-E-LkAR---- 409 (696)
T COG0855 348 HHPYESFEPVVEFLRQAAADPDVLAIKQT---------LYRTSK---DSPIVRALIDAAENGKQVTVLV-E-LKAR---- 409 (696)
T ss_pred ECchhhhHHHHHHHHHhhcCCCeEEEEEE---------EEecCC---CCHHHHHHHHHHHcCCeEEEEE-E-Ehhh----
Confidence 3444789999999999965 23333 556543 3689999999999999999998 1 1110
Q ss_pred cccccccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEecCC
Q 001122 616 YKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDAD 675 (1149)
Q Consensus 616 ~k~~g~~~t~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~ 675 (1149)
++. ..+-.+.+.|..+||+|++--. -+--|.|+++|=.+
T Consensus 410 --FDE---E~NI~WAk~LE~AGvhVvyG~~----------------glKtHAKm~lVvRr 448 (696)
T COG0855 410 --FDE---EANIHWAKRLERAGVHVVYGVV----------------GLKTHAKMLLVVRR 448 (696)
T ss_pred --cCh---hhhhHHHHHHHhCCcEEEeccc----------------ceeeeeeEEEEEEe
Confidence 010 0112467778899999986311 23469999888554
No 195
>PF13918 PLDc_3: PLD-like domain
Probab=95.49 E-value=0.11 Score=55.03 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhccEEEEEEeeeecCC------CCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 001122 843 HTAYVKAIRSAQHFIYIENQYFIGSS------YNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWP 911 (1149)
Q Consensus 843 ~~ayl~aI~~Ar~~IYIENQYFi~~~------~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~P 911 (1149)
.+|+++.|..|++||||+--=++|.. ..|+ .|-.+|.+|+ =.|||+|++++..|.
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP-------------~ID~ALR~AA-~~R~V~VRlLIS~W~ 144 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWP-------------VIDDALRRAA-IERGVKVRLLISCWK 144 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcch-------------hHHHHHHHHH-HHcCCeEEEEEeecC
Confidence 58999999999999999876666532 2454 2333333332 158999999999985
No 196
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.37 E-value=0.026 Score=68.13 Aligned_cols=84 Identities=30% Similarity=0.526 Sum_probs=65.7
Q ss_pred EEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC---C--EEEeeeeeeeCCCCCeeceEEEEEcc-----CCC
Q 001122 353 IYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---G--AVVGRTFVISNSEDPVWQQHFYVPVA-----HSA 422 (1149)
Q Consensus 353 VieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~---~--~~~~rTkVi~nt~NPvWNE~F~f~v~-----~~~ 422 (1149)
.++|++|.++|++++ +|||..+.-- + ..+.+|.++++++||.|-+ |.+.+. +..
T Consensus 142 ~~~~~~ld~kd~f~k---------------sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~ 205 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSK---------------SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGN 205 (529)
T ss_pred eeeeeecCccccccc---------------CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCC
Confidence 455788888888887 8999888742 2 3446999999999999986 555432 334
Q ss_pred cEEEEEEEEccCCCC-cceeeEEEeceeecc
Q 001122 423 AEVHFFVKDSDVVGS-ELIGTVAIPVEQIYS 452 (1149)
Q Consensus 423 ~~L~~~V~D~D~~~d-dfIG~a~IpL~~L~~ 452 (1149)
..+.+.|+|++..++ ++||++..+++++..
T Consensus 206 ~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 206 RPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 778999999998664 899999999998873
No 197
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.02 E-value=0.37 Score=48.74 Aligned_cols=119 Identities=22% Similarity=0.327 Sum_probs=79.6
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEE--EeeeeeeeC-CCCCeeceEEEEEccC---C
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAV--VGRTFVISN-SEDPVWQQHFYVPVAH---S 421 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~--~~rTkVi~n-t~NPvWNE~F~f~v~~---~ 421 (1149)
.+.|+|.+..+++.. . .-.||+...++.. .+.|..... +..-.|||+|.+.+.- .
T Consensus 8 ~~~l~i~~l~~~p~~---~----------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~ 68 (143)
T PF10358_consen 8 QFDLTIHELENLPSS---N----------------GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDK 68 (143)
T ss_pred EEEEEEEEeECcCCC---C----------------CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcC
Confidence 378999999999841 1 2345566555543 234444333 6667999999998631 1
Q ss_pred ------CcEEEEEEEEccCCCC-cceeeEEEeceeeccC--CceeeeeeecCCCCCCCCCCCcEEEEEEeecccccc
Q 001122 422 ------AAEVHFFVKDSDVVGS-ELIGTVAIPVEQIYSG--GKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLS 489 (1149)
Q Consensus 422 ------~~~L~~~V~D~D~~~d-dfIG~a~IpL~~L~~G--~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~~~d~ 489 (1149)
...+.|.|+.....+. ..+|.+.|.|.+...- .....-++|... + ...+.|+|+|++.+...++
T Consensus 69 k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~--~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 69 KSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--K--KSNATLSISISLSELREDP 141 (143)
T ss_pred CCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--C--CCCcEEEEEEEEEECccCC
Confidence 2468899988754444 5999999999999863 445566777433 1 2346899999988766543
No 198
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=94.85 E-value=0.022 Score=53.28 Aligned_cols=95 Identities=12% Similarity=0.192 Sum_probs=65.3
Q ss_pred EEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEE--EEECCEEEeeeeeeeCCCCCeeceEEEEEccCC---CcEE
Q 001122 351 IWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVT--IAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEV 425 (1149)
Q Consensus 351 VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~--V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~---~~~L 425 (1149)
|+|+.+++|.=...-|. .+.-|++ +.+.+....||.+.+...||+++|+|.|.+.-. .-.|
T Consensus 3 itv~~c~d~s~~~~~~e--------------~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L 68 (103)
T cd08684 3 ITVLKCKDLSWPSSCGE--------------NPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRL 68 (103)
T ss_pred EEEEEecccccccccCc--------------CCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEE
Confidence 78889998863332222 0222443 334555556999999999999999999987643 2457
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCceeeeee
Q 001122 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYP 461 (1149)
Q Consensus 426 ~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~ 461 (1149)
.|.|+. .+-+.+.||.+.+.+.++-. +..+.|.+
T Consensus 69 ~fsv~~-~~~RKe~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 69 VFKIQT-QTPRKRTIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred EEEeec-cCCccceeeEEEeecccCCH-HHhhhhhc
Confidence 777877 44567899999999987753 34556754
No 199
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=94.47 E-value=0.16 Score=64.34 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=36.7
Q ss_pred CCccchhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCC---C--CchHHHHHHHHHHH--hhcCCcEEEEE
Q 001122 538 GMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDA---S--PALDCTLGELLRSK--SQEGVRVLLLV 604 (1149)
Q Consensus 538 g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~---~--~~~g~~L~dlL~~k--A~rGVkVrILv 604 (1149)
|........-.+-+++|++|+|.|||+.=-| |-.-. . ...+..|.+-+.+| |++--+|+|+|
T Consensus 559 g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfF-----i~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVI 627 (887)
T KOG1329|consen 559 GINEIEDSIQNAYVKAIRNAEHFIYIENQFF-----IGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVI 627 (887)
T ss_pred CCCchHHHHHHHHHHHHHhccceEEEeeeeE-----EeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 3334444457889999999999999986211 21111 1 11233444444444 55668889887
No 200
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.31 E-value=0.34 Score=56.52 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=90.6
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC-------
Q 001122 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS------- 421 (1149)
Q Consensus 349 L~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~------- 421 (1149)
+-|.|++|++.+.... -.-.|...+++... .|-.+..+..|.||.+....+...
T Consensus 2 ivl~i~egr~F~~~~~------------------~~~vv~a~~ng~~l-~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~ 62 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPR------------------HPIVVEAKFNGESL-ETDPVPHTESPQFNTELAWECDRKALKQHRL 62 (340)
T ss_pred EEEEEecccCCCCCCC------------------ccEEEEEEeCCcee-eecCCCCCCCceeecceeeeccHHHHHHhhc
Confidence 4688999999984411 35578888999887 888888899999999999887532
Q ss_pred -CcEEEEEEEEccC--CCCcceeeEEEeceee---ccC--CceeeeeeecCCCCCCCCCCCcEEEEEEeecccc
Q 001122 422 -AAEVHFFVKDSDV--VGSELIGTVAIPVEQI---YSG--GKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1149)
Q Consensus 422 -~~~L~~~V~D~D~--~~ddfIG~a~IpL~~L---~~G--~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~~~ 487 (1149)
...|+++++..|. ...+.||.+-++|..+ ..+ .....||+|++.+++..+...+|.|.|.......
T Consensus 63 ~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 63 QRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred cCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 2568999998873 4567999999999988 555 4567999999874443333357888887655443
No 201
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.29 E-value=0.26 Score=51.51 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=67.6
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeeeCCCCCeeceEEEEE
Q 001122 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVP 417 (1149)
Q Consensus 343 ~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~~~~~~---rTkVi~nt~NPvWNE~F~f~ 417 (1149)
|=....|+|+|++++++.-.+ . +|-||++.+ +++... .|+.+. ..++.|||-..|+
T Consensus 4 wd~~~~~~v~i~~~~~~~~~~---~---------------~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fp 64 (158)
T cd08398 4 WKINSNLRIKILCATYVNVND---I---------------DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYD 64 (158)
T ss_pred eeCCCCeEEEEEeeccCCCCC---c---------------CeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcc
Confidence 445567899999999987321 1 678888866 444332 344344 3679999988877
Q ss_pred cc--CC--CcEEEEEEEEccCCC-----CcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeecc
Q 001122 418 VA--HS--AAEVHFFVKDSDVVG-----SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1149)
Q Consensus 418 v~--~~--~~~L~~~V~D~D~~~-----ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~ 485 (1149)
+. +. .+.|.|+||+....+ ...||.+.++ |+|.+|.-. .|...|.|+-.+.
T Consensus 65 I~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~---------------LFd~~~~Lr--~G~~~L~lW~~~~ 124 (158)
T cd08398 65 IYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNIN---------------LFDYTDTLV--SGKMALNLWPVPH 124 (158)
T ss_pred cchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEE---------------EECCCChhh--CCCEEEEEEcCCc
Confidence 53 22 488999999865421 1246655554 444444422 3577888886544
No 202
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=94.10 E-value=0.65 Score=49.47 Aligned_cols=139 Identities=19% Similarity=0.306 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEecCCCccccccccccccccc
Q 001122 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1149)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD~~gs~~~~g~k~~g~~~t 624 (1149)
....++.+.|+.|++...+..| +-.++ -.-|.+.|..+.++||++|||- ++.....
T Consensus 39 ~il~~Li~~l~k~~ef~IsVaF-------it~sG----~sll~~~L~d~~~Kgvkgkilt-s~YlnfT------------ 94 (198)
T COG3886 39 KILPRLIDELEKADEFEISVAF-------ITESG----LSLLFDLLLDLVNKGVKGKILT-SDYLNFT------------ 94 (198)
T ss_pred hHHHHHHHHHhcCCeEEEEEEE-------eeCcc----HHHHHHHHHHHhcCCceEEEec-ccccCcc------------
Confidence 5678999999999998888877 33332 3567889999999999999995 4432211
Q ss_pred ccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceeEEecCCCCCCCccEEEEEccccCCCCCCCCCCCCc
Q 001122 625 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 704 (1149)
Q Consensus 625 ~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l 704 (1149)
+-...++.+.-.+|+++++.-. ...+|-|-.|.-.+.. ..|+||+.||++.-.- ..
T Consensus 95 dP~al~~Ll~~~nve~r~~~~~---------------~~~fH~KgYiFe~~~~-----~taiiGSsNlt~sALt-~n--- 150 (198)
T COG3886 95 DPVALRKLLMLKNVELRVSTIG---------------SANFHTKGYIFEHNTG-----ITAIIGSSNLTDSALT-VN--- 150 (198)
T ss_pred CHHHHHHHHhhhccceEEEecC---------------ccccccceeEEEecce-----EEEEEccchhhhhhcc-cC---
Confidence 1112345555556887765321 2357888777544322 5899999999997431 11
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCee-eeeeEEcCHHHHHHHHHHHHHHH
Q 001122 705 FRTLQTLHKDDYHNPTFTGNTTGCPREPWH-DLHSKIDGPAAYDVLTNFEERWR 757 (1149)
Q Consensus 705 ~~~l~~~~~~Dy~np~~~~~~~~~pr~PWH-Dv~vrI~GPaa~Dl~~~F~qrWn 757 (1149)
..|- -+...-.|..|..+...|+..|.
T Consensus 151 --------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~ 178 (198)
T COG3886 151 --------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQ 178 (198)
T ss_pred --------------------------HHHHhhhccccccchHHHHHHHHHHHHH
Confidence 1121 12333467889999999999998
No 203
>PLN03008 Phospholipase D delta
Probab=93.51 E-value=0.31 Score=62.07 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCC-----CchHHHHHHHHHHH--hhcCCcEEEEE
Q 001122 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-----PALDCTLGELLRSK--SQEGVRVLLLV 604 (1149)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~-----~~~g~~L~dlL~~k--A~rGVkVrILv 604 (1149)
....+.++||++|||.|||+.=-|-...+.+.... .-++..|...|.+| +.++-+|+|++
T Consensus 567 SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 567 SIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred hHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 45789999999999999998633322222221111 12455666666665 56788898887
No 204
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=93.32 E-value=0.16 Score=56.27 Aligned_cols=49 Identities=27% Similarity=0.282 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhcceEEEEEeccceeeEEeCCCCchHHHHHHHHHHHhhcCCcEEEEEec
Q 001122 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWD 606 (1149)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILvwD 606 (1149)
...+.+.+.|++|+++|+|..|. ..-..|.+.|++|.+|||+|.|+++.
T Consensus 10 ~I~~~i~elI~~Ae~eI~is~~~-------------~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 10 TILERIRELIENAESEIYISIPP-------------EFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHC-SSEEEEEE-G-------------GGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHhheEEEEEcCH-------------HHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 35789999999999999999882 13468999999999999999999965
No 205
>PLN02270 phospholipase D alpha
Probab=93.23 E-value=0.29 Score=62.31 Aligned_cols=62 Identities=19% Similarity=0.124 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHhhcceEEEEEeccceeeEEeCC--------C-CchHHHHHHHHHHH--hhcCCcEEEEE
Q 001122 543 HGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDA--------S-PALDCTLGELLRSK--SQEGVRVLLLV 604 (1149)
Q Consensus 543 ~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~--------~-~~~g~~L~dlL~~k--A~rGVkVrILv 604 (1149)
..+...+.++||++||++|||+.=-|.....-+..+ . .-++..|...|.+| +.++-+|+|++
T Consensus 497 ~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 497 DRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 346788999999999999999863222211111100 0 01344555566665 56789999987
No 206
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=92.47 E-value=0.87 Score=48.32 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=50.6
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeeeCCCCCeeceEEEEE
Q 001122 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVP 417 (1149)
Q Consensus 343 ~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~~~~~~---rTkVi~nt~NPvWNE~F~f~ 417 (1149)
|=.+..++|+|+.+.+|.-.+ . ..+-||++.| +++... .|+.+.-+..+.|||.+.|+
T Consensus 4 w~~~~~f~i~i~~~~~~~~~~--~---------------~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~ 66 (173)
T cd08693 4 WDIEEKFSITLHKISNLNAAE--R---------------TMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD 66 (173)
T ss_pred eccCCCEEEEEEEeccCccCC--C---------------CceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc
Confidence 334556899999999997411 1 1567888765 454432 55555545779999988887
Q ss_pred cc--CC--CcEEEEEEEEccC
Q 001122 418 VA--HS--AAEVHFFVKDSDV 434 (1149)
Q Consensus 418 v~--~~--~~~L~~~V~D~D~ 434 (1149)
+. +. .+.|.|+||+...
T Consensus 67 I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 67 INVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred cchhcCChhHeEEEEEEEecc
Confidence 53 22 4789999998653
No 207
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.11 E-value=0.38 Score=54.31 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=61.1
Q ss_pred ceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccC
Q 001122 341 KVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 341 ~~~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~ 420 (1149)
.+.-..|.|.+.++++++|+-.... +.-+.|.||+++++.+-.+||+|.....-=.|.|+|++.+..
T Consensus 45 ~~~s~tGiL~~H~~~GRGLr~~p~~-------------kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~ 111 (442)
T KOG1452|consen 45 RLVSSTGILYFHAYNGRGLRMTPQQ-------------KGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN 111 (442)
T ss_pred eeecccceEEEEEecccccccChhc-------------cCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc
Confidence 3444678899999999999843221 112379999999998876788887777777899999998763
Q ss_pred CCcEEEEEEEEccC
Q 001122 421 SAAEVHFFVKDSDV 434 (1149)
Q Consensus 421 ~~~~L~~~V~D~D~ 434 (1149)
...+.+-|+.|+.
T Consensus 112 -~~vl~~lvySW~p 124 (442)
T KOG1452|consen 112 -IEVLHYLVYSWPP 124 (442)
T ss_pred -ceeeeEEEeecCc
Confidence 3478888988887
No 208
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=90.03 E-value=2.7 Score=43.84 Aligned_cols=103 Identities=16% Similarity=0.261 Sum_probs=70.0
Q ss_pred CCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCC--------------cEEEEEEEEccCCC-CcceeeEEEec
Q 001122 383 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA--------------AEVHFFVKDSDVVG-SELIGTVAIPV 447 (1149)
Q Consensus 383 sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~--------------~~L~~~V~D~D~~~-ddfIG~a~IpL 447 (1149)
+-..+-+.+.+++. +|+-+..+.+|.++|.|.|++.... ..|++.|.--|..+ ..++|.-.+.=
T Consensus 34 s~~~l~l~f~~QRF-~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldW 112 (156)
T PF15627_consen 34 STFTLHLHFRGQRF-RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDW 112 (156)
T ss_pred eEEEEEEEecCceE-ecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehH
Confidence 44566677789997 9999999999999999999985441 34677777666543 36888877766
Q ss_pred eeeccCCc--eeeeeeecCCCCCCCCCCCcEEEEEEeeccc
Q 001122 448 EQIYSGGK--VEGTYPVLNGSGKPCKPGATLTLSIQYTPME 486 (1149)
Q Consensus 448 ~~L~~G~~--~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~~ 486 (1149)
..+..... ...-+.|.+......-..|.|.|++...|..
T Consensus 113 R~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 113 RKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred HHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 55553222 2345666654443223457888988887754
No 209
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.70 E-value=3.5 Score=44.08 Aligned_cols=125 Identities=9% Similarity=0.010 Sum_probs=67.1
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEe--eeeeeeCCCCCeeceEEEEEc
Q 001122 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG--RTFVISNSEDPVWQQHFYVPV 418 (1149)
Q Consensus 343 ~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~~~~~~--rTkVi~nt~NPvWNE~F~f~v 418 (1149)
|=+...++|+|..++.+ +.+.... ..-||++.+ ++.... +|..+..+.++.|||-+.|++
T Consensus 6 wdi~~~friki~~~~~~-~~~~~~~---------------~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I 69 (178)
T cd08399 6 WDCDRKFRVKILGIDIP-VLPRNTD---------------LTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDI 69 (178)
T ss_pred EecCCCEEEEEEeeccc-CcCCCCc---------------eEEEEEEEEEECCeecccceeeccCCCCCccccccEECcc
Confidence 33445688998888733 2221110 234555543 333221 566666678899999877775
Q ss_pred c--CC--CcEEEEEEEEccCCC--CcceeeEEEeceeeccCCceeee--eeecCCCCCCCCCCCcEEEEEEeecccc
Q 001122 419 A--HS--AAEVHFFVKDSDVVG--SELIGTVAIPVEQIYSGGKVEGT--YPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1149)
Q Consensus 419 ~--~~--~~~L~~~V~D~D~~~--ddfIG~a~IpL~~L~~G~~~~~W--~~L~~~~gk~~~~~g~L~L~l~f~p~~~ 487 (1149)
. +. .+.|.|+||+....+ ....|.. +.++-......-+| +.|+|.+|.-. .|...|.++-.|...
T Consensus 70 ~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~wvn~~LFD~~~~Lr--~G~~~L~~W~~~~~~ 142 (178)
T cd08399 70 KIKDLPKGALLNLQIYCGKAPALSSKKSAES--PSSESKGKHQLLYYVNLLLIDHRFLLR--TGEYVLHMWQISGKG 142 (178)
T ss_pred ccccCChhhEEEEEEEEEecCcccccccccc--cccccccccceEEEEEEEEEcCCCcee--cCCEEEEEecCCCcc
Confidence 3 22 478999999864321 1122221 11111111112234 45677776533 468888888766433
No 210
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=89.47 E-value=1.9 Score=44.62 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=55.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEE---eeeeeeeCCCCCeeceEEEEEcc--
Q 001122 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVV---GRTFVISNSEDPVWQQHFYVPVA-- 419 (1149)
Q Consensus 347 GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~~~~~---~rTkVi~nt~NPvWNE~F~f~v~-- 419 (1149)
..++|+|....++...+. . ..+-||++.+ +++.. ..|+......++.|||...|++.
T Consensus 8 ~~~~i~i~~~~~~~~~~~-~---------------~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~ 71 (156)
T cd08380 8 FNLRIKIHGITNINLLDS-E---------------DLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILIS 71 (156)
T ss_pred CCeEEEEEeeccccccCC-C---------------ceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhh
Confidence 357888888888763110 0 1567887765 44322 13443333478999998888753
Q ss_pred CC--CcEEEEEEEEccCCC---CcceeeEEEecee
Q 001122 420 HS--AAEVHFFVKDSDVVG---SELIGTVAIPVEQ 449 (1149)
Q Consensus 420 ~~--~~~L~~~V~D~D~~~---ddfIG~a~IpL~~ 449 (1149)
+. .+.|.|+|++.+..+ ...||.+.++|=+
T Consensus 72 ~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 72 DLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred cCChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 22 478999999977643 4678887776543
No 211
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=88.66 E-value=4 Score=43.15 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=55.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeee--C--CCCCeeceEEE
Q 001122 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVIS--N--SEDPVWQQHFY 415 (1149)
Q Consensus 345 l~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~~~~~~---rTkVi~--n--t~NPvWNE~F~ 415 (1149)
....+.|+|..+.+++....... .|.||++.+ +++.+. .|+... + ...+.|||-..
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~---------------~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~ 70 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSF---------------EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIE 70 (171)
T ss_pred ccccEEEEEEEeecCChHHhhcc---------------ccEEEEEEEEECCEECcCceeccccccccCccccccccceEE
Confidence 34568999999999984432111 688998876 444432 343221 1 33578999888
Q ss_pred EEccC--C--CcEEEEEEEEccCCC----------CcceeeEEEec
Q 001122 416 VPVAH--S--AAEVHFFVKDSDVVG----------SELIGTVAIPV 447 (1149)
Q Consensus 416 f~v~~--~--~~~L~~~V~D~D~~~----------ddfIG~a~IpL 447 (1149)
|++.- . ++.|.|+|++....+ ...||.+.++|
T Consensus 71 F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~L 116 (171)
T cd04012 71 FPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPL 116 (171)
T ss_pred CccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEee
Confidence 87532 2 478999999866532 24566655554
No 212
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=87.32 E-value=1.9 Score=45.21 Aligned_cols=65 Identities=18% Similarity=0.296 Sum_probs=45.1
Q ss_pred CCcEEEEEE--CCEEEe---eeeeeeCCCCCeeceEEEEEccC--C--CcEEEEEEEEccCCC-CcceeeEEEec
Q 001122 383 SDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPVAH--S--AAEVHFFVKDSDVVG-SELIGTVAIPV 447 (1149)
Q Consensus 383 sDPYV~V~l--~~~~~~---rTkVi~nt~NPvWNE~F~f~v~~--~--~~~L~~~V~D~D~~~-ddfIG~a~IpL 447 (1149)
+|-||++.+ +++.+. +|..+.-+..+.|||-..|++.- . .+.|.|+|||.+..+ ...||.++++|
T Consensus 30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~l 104 (159)
T cd08397 30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSL 104 (159)
T ss_pred CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEee
Confidence 788998876 444332 56555557778999988887642 2 488999999977543 44777776654
No 213
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=86.02 E-value=2.9 Score=44.13 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=57.6
Q ss_pred CCcEEEEEECCEEEeeeeeeeC--CCCCeeceEEEEEccCCCcEEEEEEEEccCCCCcceeeEEEeceeec
Q 001122 383 SDPYVTIAVAGAVVGRTFVISN--SEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIY 451 (1149)
Q Consensus 383 sDPYV~V~l~~~~~~rTkVi~n--t~NPvWNE~F~f~v~~~~~~L~~~V~D~D~~~ddfIG~a~IpL~~L~ 451 (1149)
..-|++|.++++.+.+|+...- ...=.+||.|.+.+..-...|.|+||......+.+|+++.||+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 5679999999999888876543 45567899999999877789999999988888999999999986443
No 214
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=85.30 E-value=4.9 Score=38.33 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=60.5
Q ss_pred CCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeeee
Q 001122 383 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 383 sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~~V~D~D~~~ddfIG~a~IpL~~L~~G~~~~~W~~L 462 (1149)
++-.+++.+++..+++|.-... .+..|+++|.|.+.. ..+|.|.|+=+|. ..+.|...+.|++...+. -.+|
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~--RslCav~~lrLEd~~~~~----~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW--RSLCAVKFLKLEDERHEV----QLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc--hhhhhheeeEhhhhcccc----eecc
Confidence 5778999999999998876543 567899999999974 4589999987664 456777778887743321 2333
Q ss_pred cCCCCCCCCCCCcEEEEEEe
Q 001122 463 LNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 463 ~~~~gk~~~~~g~L~L~l~f 482 (1149)
.++|.+...+.|
T Consensus 81 --------epqg~l~~ev~f 92 (98)
T cd08687 81 --------EPQLCLVAELTF 92 (98)
T ss_pred --------ccccEEEEEEEe
Confidence 244577777777
No 215
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=85.18 E-value=2.1 Score=49.76 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCc
Q 001122 886 EIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNR 965 (1149)
Q Consensus 886 ~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~dYl~f~~L~~r 965 (1149)
.|+.+|.+|.+ .|=+|.+++-...-.+ +..+. +| .++|.++|+++.|. +
T Consensus 51 ~iv~aLi~AA~--nGK~Vtv~vELkARFD-Ee~Ni----~W------------a~~Le~aGv~ViyG---------~--- 99 (352)
T PF13090_consen 51 PIVNALIEAAE--NGKQVTVLVELKARFD-EENNI----HW------------AKRLEEAGVHVIYG---------V--- 99 (352)
T ss_dssp HHHHHHHHHHH--TT-EEEEEESTTSSST-TCCCC----CC------------CHHHHHCT-EEEE--------------
T ss_pred HHHHHHHHHHH--cCCEEEEEEEEecccc-HHHHh----HH------------HhhHHhcCeEEEcC---------C---
Confidence 57788888755 4666777776543221 22232 23 46799999988651 1
Q ss_pred ccccccCCCCCCCCCCCCChhhhccccCcccceeeeEEEEEe-------CeEEEEcccCcccccCCCCCCcceEEEEeCc
Q 001122 966 EVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVD-------DEYVILGSANINQRSMEGTRDTEIAMGAYQP 1038 (1149)
Q Consensus 966 e~~~~~~~~~~~~~~~~n~~~~~~~~~r~~~iYVHSKlmIVD-------D~~viIGSANiN~RSm~G~~DsEiav~i~dp 1038 (1149)
...-||||+++|= -+|+-||+-|+|...-. .=|.+++..-++
T Consensus 100 -----------------------------~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr--~YtD~~l~Ta~~ 148 (352)
T PF13090_consen 100 -----------------------------PGLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTAR--IYTDLSLFTADP 148 (352)
T ss_dssp -----------------------------TT-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCC--CEEEEEEEE--H
T ss_pred -----------------------------CChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchh--heecceeecCCH
Confidence 0247999999885 28999999999999987 678889888888
Q ss_pred chh
Q 001122 1039 EYT 1041 (1149)
Q Consensus 1039 ~~~ 1041 (1149)
+.+
T Consensus 149 ~i~ 151 (352)
T PF13090_consen 149 EIG 151 (352)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 216
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.34 E-value=4.5 Score=43.15 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=32.0
Q ss_pred eeeeeeeCCCCCeeceEEEEEccCC---CcEEEEEEEEccCC--C--CcceeeEEEecee
Q 001122 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVV--G--SELIGTVAIPVEQ 449 (1149)
Q Consensus 397 ~rTkVi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D~~--~--ddfIG~a~IpL~~ 449 (1149)
..|.|...+.+|.|+|+|.+.+... ...|.|++++.... + +..+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3788888899999999999998654 36799999986652 1 2578887777765
No 217
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=80.66 E-value=6.8 Score=48.79 Aligned_cols=42 Identities=29% Similarity=0.435 Sum_probs=33.6
Q ss_pred eeeeEEEEEe----C---eEEEEcccCcccccCCCCCCcceEEEEeCcchh
Q 001122 998 YVHSKGMIVD----D---EYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 998 YVHSKlmIVD----D---~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
.+|||+++|= | +|+-+|+-|.|..+-. .=|.+++..-|++..
T Consensus 437 KtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAr--iYTD~sl~Tad~~i~ 485 (696)
T COG0855 437 KTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTAR--LYTDLSLLTADPEIG 485 (696)
T ss_pred eeeeeEEEEEEecCCcEEEEEEecCCCCCcccee--eeeechhccCCHHHH
Confidence 6899999884 2 7999999999999987 667777776666643
No 218
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=79.87 E-value=11 Score=43.54 Aligned_cols=41 Identities=32% Similarity=0.330 Sum_probs=29.8
Q ss_pred ceeeeEEEEE-e---CeEEEEcccCccc-ccCCCCCCcceEEEEeCcc
Q 001122 997 IYVHSKGMIV-D---DEYVILGSANINQ-RSMEGTRDTEIAMGAYQPE 1039 (1149)
Q Consensus 997 iYVHSKlmIV-D---D~~viIGSANiN~-RSm~G~~DsEiav~i~dp~ 1039 (1149)
+-+|+|+.+. . +..++|||||+.. -.+. .+-.| ++++.|+.
T Consensus 79 ~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~~ 124 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDPN 124 (296)
T ss_pred CCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecChH
Confidence 4689999999 2 4689999999987 3332 36778 66666653
No 219
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=79.34 E-value=15 Score=39.69 Aligned_cols=51 Identities=20% Similarity=0.514 Sum_probs=36.5
Q ss_pred eeeeeeeCCCCCeeceEEEEEccCC---CcEEEEEEEEccCCC--C-cceeeEEEec
Q 001122 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVVG--S-ELIGTVAIPV 447 (1149)
Q Consensus 397 ~rTkVi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D~~~--d-dfIG~a~IpL 447 (1149)
.+|.|...+.+|.|||++.+.++.. ...|.|++++..... + ..+|-+.+||
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 4899999999999999999998643 478999887744321 1 3455555554
No 220
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=78.77 E-value=4.4 Score=49.63 Aligned_cols=85 Identities=31% Similarity=0.459 Sum_probs=58.6
Q ss_pred EEEeeeeeeeCCCCCeeceEEEEEccCC-CcEEEEEEEEccCC-----CCcceeeEEEeceeeccCCceeeeeeecCCCC
Q 001122 394 AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDVV-----GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 467 (1149)
Q Consensus 394 ~~~~rTkVi~nt~NPvWNE~F~f~v~~~-~~~L~~~V~D~D~~-----~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~g 467 (1149)
.+++||.++.+.+||.|-+.|.+...-. .+.|+|+++|-+.. ..+|+|++...+.++.+-..... +|..+.+
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~--~l~~~~~ 117 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTG--PLLLKPG 117 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhh--hhhcccC
Confidence 3456999999999999999988775433 47899999987753 47899999999998885432222 3332333
Q ss_pred CCCCCCCcEEEEEE
Q 001122 468 KPCKPGATLTLSIQ 481 (1149)
Q Consensus 468 k~~~~~g~L~L~l~ 481 (1149)
+.. ..|.|.+.+.
T Consensus 118 ~~~-~~g~iti~ae 130 (529)
T KOG1327|consen 118 KNA-GSGTITISAE 130 (529)
T ss_pred ccC-CcccEEEEee
Confidence 332 2346665555
No 221
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=78.54 E-value=8.7 Score=39.17 Aligned_cols=66 Identities=23% Similarity=0.368 Sum_probs=42.2
Q ss_pred CcEEEEEE--CCEE----EeeeeeeeCC-CCCeeceEEEEEc--cCC--CcEEEEEEEEccCCCC-----cceeeEEEec
Q 001122 384 DPYVTIAV--AGAV----VGRTFVISNS-EDPVWQQHFYVPV--AHS--AAEVHFFVKDSDVVGS-----ELIGTVAIPV 447 (1149)
Q Consensus 384 DPYV~V~l--~~~~----~~rTkVi~nt-~NPvWNE~F~f~v--~~~--~~~L~~~V~D~D~~~d-----dfIG~a~IpL 447 (1149)
+.||.+.| +++. +.+|+.+.-+ .++.|||.+.|++ .+. .+.|.|+|++.+.... ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 34555554 4433 2356666555 8999999877774 322 5899999998776443 5788887776
Q ss_pred ee
Q 001122 448 EQ 449 (1149)
Q Consensus 448 ~~ 449 (1149)
=+
T Consensus 83 Fd 84 (142)
T PF00792_consen 83 FD 84 (142)
T ss_dssp B-
T ss_pred EC
Confidence 44
No 222
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=77.74 E-value=12 Score=36.83 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=51.7
Q ss_pred EEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCC--------CcEEEEEEEEccCCCCcceeeEEEeceeecc--CCc
Q 001122 386 YVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--------AAEVHFFVKDSDVVGSELIGTVAIPVEQIYS--GGK 455 (1149)
Q Consensus 386 YV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~--------~~~L~~~V~D~D~~~ddfIG~a~IpL~~L~~--G~~ 455 (1149)
||++.+-.-....|.++. +.+|..|-+-.+.|... ...+.|+++.---..-..||.+.|++.++.. |..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 556666554444777776 89999999888877654 2568888876443335699999999999884 345
Q ss_pred eeeeeeecCCCCCCCCCCCcEEEEEEee
Q 001122 456 VEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 456 ~~~W~~L~~~~gk~~~~~g~L~L~l~f~ 483 (1149)
+.....|.+.+|+. -|.|.+.++..
T Consensus 81 i~~~~~l~g~~~~~---~g~l~y~~rl~ 105 (107)
T PF11618_consen 81 IHGSATLVGVSGED---FGTLEYWIRLR 105 (107)
T ss_dssp EEEEEEE-BSSS-T---SEEEEEEEEEE
T ss_pred EEEEEEEeccCCCe---EEEEEEEEEec
Confidence 67778888877773 46888877753
No 223
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=74.61 E-value=7.2 Score=49.85 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=74.4
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeeceEEEEEc
Q 001122 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPV 418 (1149)
Q Consensus 343 ~Ll~GtL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~----~~~~rTkVi~nt~NPvWNE~F~f~v 418 (1149)
-+.-|.|.+.+.+|..|..- ...||+..++. ...++|++|.+|..|.||++|++++
T Consensus 755 pl~ygflh~~vhsat~lkqs--------------------~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~ 814 (1112)
T KOG4269|consen 755 PLLYGFLHVIVHSATGLKQS--------------------RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPV 814 (1112)
T ss_pred cccccceeeeeccccccccc--------------------cceeeehhhhhhccccccccceeeecccCCCCChhcccch
Confidence 46678899999999988731 47788887753 2336999999999999999999998
Q ss_pred cCCCcEEEEEEEEccCC-----------CCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEeecccc
Q 001122 419 AHSAAEVHFFVKDSDVV-----------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1149)
Q Consensus 419 ~~~~~~L~~~V~D~D~~-----------~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p~~~ 487 (1149)
... +.++|...+++.- .+...|+..+.+.--.. ....|+.-...- .+..+...|.|.+...
T Consensus 815 ~~s-qS~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~--~d~d~~t~v~~~-----n~~~ve~~v~~ssss~ 886 (1112)
T KOG4269|consen 815 IES-QSSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPH--HDADWYTQVIDM-----NGIVVETSVKFSSSST 886 (1112)
T ss_pred hhc-cccchhhhcccchHHHhhhccchhhcccccccccccCcccc--ccccCccChhhh-----cCcceeeeEEeccccc
Confidence 643 3455666655531 13345554444332111 112344332211 1236778888887665
Q ss_pred cc
Q 001122 488 LS 489 (1149)
Q Consensus 488 d~ 489 (1149)
..
T Consensus 887 Ss 888 (1112)
T KOG4269|consen 887 SS 888 (1112)
T ss_pred cc
Confidence 44
No 224
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=71.64 E-value=20 Score=34.44 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=34.4
Q ss_pred CCcEEEEEE--CCEEEe---eeeeeeCCCCCeeceEEEEEcc--CC--CcEEEEEEEEcc
Q 001122 383 SDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPVA--HS--AAEVHFFVKDSD 433 (1149)
Q Consensus 383 sDPYV~V~l--~~~~~~---rTkVi~nt~NPvWNE~F~f~v~--~~--~~~L~~~V~D~D 433 (1149)
+|-||++.+ +++... .|+.+.-...+.|||-..|++. +. .+.|.|+|++..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 478888876 444332 5554444666899998888753 22 478999999853
No 225
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=70.97 E-value=14 Score=40.07 Aligned_cols=52 Identities=12% Similarity=0.263 Sum_probs=38.2
Q ss_pred eeeeeeeCCCCCeeceEEEEEccCC---CcEEEEEEEEccCC--CC---cceeeEEEece
Q 001122 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVV--GS---ELIGTVAIPVE 448 (1149)
Q Consensus 397 ~rTkVi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D~~--~d---dfIG~a~IpL~ 448 (1149)
.+|.|...+.+|.|||++.+.++.. ...|.|++++.... +| ..+|-+.+||-
T Consensus 55 ~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 55 YKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred EEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4888988899999999999988643 47899999775431 22 35666666653
No 226
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=67.94 E-value=14 Score=39.33 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=35.8
Q ss_pred eeeeeCCCCCeeceEEEEEccCC---CcEEEEEEEEccCCC------CcceeeEEEecee
Q 001122 399 TFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVVG------SELIGTVAIPVEQ 449 (1149)
Q Consensus 399 TkVi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D~~~------ddfIG~a~IpL~~ 449 (1149)
|.++....+|.|+|+|.+.+... ...|.|++++-.... ...+|-+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444449999999999998543 467999999866422 3467777777654
No 227
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=66.63 E-value=60 Score=35.11 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHH-HHHHHHHHHcCCCcEEEEEecCC
Q 001122 840 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEI-ALKIADKIRAHERFAAYIVIPMW 910 (1149)
Q Consensus 840 ~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~i-al~Ia~ai~a~rgv~V~IVlP~~ 910 (1149)
.-|...+++.|+.|+.|..+. -|+..+ +..+ ...+..+ .++|++++|+....
T Consensus 38 e~il~~Li~~l~k~~ef~IsV--aFit~s---------------G~sll~~~L~d~--~~Kgvkgkilts~Y 90 (198)
T COG3886 38 EKILPRLIDELEKADEFEISV--AFITES---------------GLSLLFDLLLDL--VNKGVKGKILTSDY 90 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEE--EEeeCc---------------cHHHHHHHHHHH--hcCCceEEEecccc
Confidence 368999999999999998888 466543 1122 2223332 47999999999764
No 228
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.97 E-value=2.4 Score=52.94 Aligned_cols=92 Identities=12% Similarity=0.041 Sum_probs=62.8
Q ss_pred CCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEEEEEEccC-CCCcceeeEEEeceeecc-CCceeeee
Q 001122 383 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDV-VGSELIGTVAIPVEQIYS-GGKVEGTY 460 (1149)
Q Consensus 383 sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~~V~D~D~-~~ddfIG~a~IpL~~L~~-G~~~~~W~ 460 (1149)
.|||+.|.+.-...+.+.+...+.+|.|||+|.+.+. ....+.|.|+.... -.+.+..++.+-.++++. ....+.|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 6999999998777667777788999999999999955 44578888887653 224455555565555553 22345788
Q ss_pred eecCCCCCCCCCCCcEEEEEEee
Q 001122 461 PVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 461 ~L~~~~gk~~~~~g~L~L~l~f~ 483 (1149)
.+ .+. |++...+.++
T Consensus 107 ~~-~~~-------g~~~~~~~~~ 121 (694)
T KOG0694|consen 107 LI-EEL-------GTLLKPAALT 121 (694)
T ss_pred cc-ccc-------cceeeeeccc
Confidence 75 233 3555555544
No 229
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=64.77 E-value=22 Score=38.14 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=32.0
Q ss_pred EeeeeeeeCCCCCeeceEEEEEccCC---CcEEEEEEEEccC
Q 001122 396 VGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDV 434 (1149)
Q Consensus 396 ~~rTkVi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D~ 434 (1149)
...|.|...+.+|.|+|+|.+.+.-. ...|.|+.++.+.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 35888999999999999999998644 3679999998654
No 230
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=61.94 E-value=8.9 Score=45.21 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 001122 841 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMW 910 (1149)
Q Consensus 841 sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~ 910 (1149)
..++.+.+.|..||+.|+|.+=|.--. ..|++..|-.++..+..++|-|++...
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~ 92 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFL 92 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhh
Confidence 577889999999999999999888643 468899999999999999999999764
No 231
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=60.71 E-value=5.7 Score=48.32 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=28.8
Q ss_pred cccceeeeEEEEEeC-------eEEEEcccCcccccCCCC----------CCcceEEEEe
Q 001122 994 RFMIYVHSKGMIVDD-------EYVILGSANINQRSMEGT----------RDTEIAMGAY 1036 (1149)
Q Consensus 994 ~~~iYVHSKlmIVDD-------~~viIGSANiN~RSm~G~----------~DsEiav~i~ 1036 (1149)
|..+..|+|+++... .|+++|||||-.=.+ |. +|.|++|++.
T Consensus 344 R~~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAW-G~~~~~~~~l~i~nyElGVl~~ 402 (443)
T PF06087_consen 344 RSRAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAW-GKRSKNGSQLSIRNYELGVLFL 402 (443)
T ss_dssp TTTS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEEE
T ss_pred CCCcCcceEEEEEecCCCCCccceEEeCcccCCHHHh-cccccCCceeeecceEEEEEEe
Confidence 445788999999986 599999999976444 34 7999999983
No 232
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=54.36 E-value=48 Score=35.81 Aligned_cols=39 Identities=8% Similarity=0.192 Sum_probs=31.9
Q ss_pred EeeeeeeeCCCCCeeceEEEEEccCC---CcEEEEEEEEccC
Q 001122 396 VGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDV 434 (1149)
Q Consensus 396 ~~rTkVi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D~ 434 (1149)
.+.|.|...+.+|.|+|++.+.+.-. ...|.|+.++-..
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc 98 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSC 98 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeecc
Confidence 35889999999999999999987643 3679999998653
No 233
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=47.56 E-value=33 Score=38.00 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecC
Q 001122 839 DMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM 909 (1149)
Q Consensus 839 e~sI~~ayl~aI~~Ar~~IYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~ 909 (1149)
...|.+...++|++|++.|||.... . . -.++...|.+|. .+|++|.|++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~----~-------------~-l~~l~~~L~~a~--~rGV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPP----E-------------F-LEELRDELEEAV--DRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-G----G-------------G-HHHHHHHHHHHH--HTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCH----H-------------H-HHHHHHHHHHHH--HCCCEEEEEEeC
Confidence 3578999999999999999998542 1 0 124555565553 689999999976
No 234
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=46.29 E-value=40 Score=42.98 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=5.9
Q ss_pred ceeeEEEeceeec
Q 001122 439 LIGTVAIPVEQIY 451 (1149)
Q Consensus 439 fIG~a~IpL~~L~ 451 (1149)
|+|...+|-++|+
T Consensus 707 flgS~rmpyeeik 719 (1102)
T KOG1924|consen 707 FLGSFRMPYEEIK 719 (1102)
T ss_pred HHhhccCCHHHHH
Confidence 4454444444443
No 235
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.98 E-value=33 Score=41.41 Aligned_cols=12 Identities=67% Similarity=1.118 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCC
Q 001122 47 PAYPYQPSACPP 58 (1149)
Q Consensus 47 ~~~~~~~~~~~~ 58 (1149)
|+||||-++-||
T Consensus 453 p~~P~~~~pppP 464 (483)
T KOG2236|consen 453 PAYPHQQSPPPP 464 (483)
T ss_pred CCCccccCCCCC
Confidence 577888887666
No 236
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=43.63 E-value=1.2e+02 Score=38.01 Aligned_cols=113 Identities=12% Similarity=0.177 Sum_probs=74.0
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeeceEEEEEccCCCcEEEE
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1149)
.|+|.|.+.++|+....+. =-||++++.|.+. +|.-.. ...|.|.-.=.|...++...+.+
T Consensus 342 smevvvmevqglksvapnr-----------------ivyctmevegekl-qtdqae-askp~wgtqgdfstthplpvvkv 402 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPNR-----------------IVYCTMEVEGEKL-QTDQAE-ASKPKWGTQGDFSTTHPLPVVKV 402 (1218)
T ss_pred eeeEEEeeeccccccCCCe-----------------eEEEEEEeccccc-ccchhh-hcCCCCCcCCCcccCCCCceeEE
Confidence 5889999999998654322 3599999999876 554332 45699998878888887767777
Q ss_pred EEEEccC----CCCcceeeEEEeceeeccCCceeeeeeecCCCCCCCCCCCcEEEEEEe
Q 001122 428 FVKDSDV----VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 428 ~V~D~D~----~~ddfIG~a~IpL~~L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f 482 (1149)
.++-... ..|.-+|++-|--. ........|+.+.-++..+-. .-+|+|-++.
T Consensus 403 klftestgvlaledkelgrvil~pt--pns~ks~ewh~mtvpknsqdq-dlkiklavrm 458 (1218)
T KOG3543|consen 403 KLFTESTGVLALEDKELGRVILQPT--PNSAKSPEWHTMTVPKNSQDQ-DLKIKLAVRM 458 (1218)
T ss_pred EEEeecceeEEeechhhCeEEEecC--CCCcCCccceeeecCCCCcCc-cceEEEEEec
Confidence 7776544 34778999877322 112334578887545443322 2255555553
No 237
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=39.76 E-value=1.7e+02 Score=34.26 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=73.1
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCC--eeceEEEEEccCCCcEE
Q 001122 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDP--VWQQHFYVPVAHSAAEV 425 (1149)
Q Consensus 348 tL~VtVieAr~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~~~~~~rTkVi~nt~NP--vWNE~F~f~v~~~~~~L 425 (1149)
.|-|.|.+-.++... ...|+.+..+...+ +|..+.-+..= .-.|...+.+..-...|
T Consensus 59 ~LLVeI~EI~~i~k~--------------------khiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTL 117 (508)
T PTZ00447 59 YLLVKINEIFNINKY--------------------KHIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETL 117 (508)
T ss_pred eEEEEehhhhccccc--------------------eeEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceE
Confidence 377888776666411 35699999988776 66444332221 23455566666556789
Q ss_pred EEEEEEccCCCCcceeeEEEece-eeccC-CceeeeeeecCCCCCCCCCCCcEEEEEEee
Q 001122 426 HFFVKDSDVVGSELIGTVAIPVE-QIYSG-GKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 426 ~~~V~D~D~~~ddfIG~a~IpL~-~L~~G-~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~ 483 (1149)
++.|+-...++..-||.+.|.+. ++..+ -....||-| .++|+. ..+|.|.|.
T Consensus 118 kI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnkWy~c-~kDGq~-----~cRIqLSFh 171 (508)
T PTZ00447 118 RVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNEWFVC-FKDGQE-----ICKVQMSFY 171 (508)
T ss_pred EEEEEeccccceeEEEEEEecccHHHHhccCCccceEEE-ecCCce-----eeeEEEEeh
Confidence 99999888888999999999985 45444 345689999 477764 345666664
No 238
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=37.92 E-value=35 Score=41.08 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=33.6
Q ss_pred ceeeEEEecee-eccCCceeeeeeecCCCCCCCCCCCcEEEEEEeec
Q 001122 439 LIGTVAIPVEQ-IYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 439 fIG~a~IpL~~-L~~G~~~~~W~~L~~~~gk~~~~~g~L~L~l~f~p 484 (1149)
++|.+.||+.. +..|...+.||++.+...+..+ .|.| |+++|..
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~-~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVG-EGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcC-cceE-EEEEeee
Confidence 48999999999 5567788999999987666543 4566 6777654
No 239
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=37.76 E-value=3.4e+02 Score=32.87 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=58.2
Q ss_pred CCcEEEEEECCEEEeeeeeeeC----CCCC-eec---eEEEEEcc------CC------CcEEEEEEEEccC-------C
Q 001122 383 SDPYVTIAVAGAVVGRTFVISN----SEDP-VWQ---QHFYVPVA------HS------AAEVHFFVKDSDV-------V 435 (1149)
Q Consensus 383 sDPYV~V~l~~~~~~rTkVi~n----t~NP-vWN---E~F~f~v~------~~------~~~L~~~V~D~D~-------~ 435 (1149)
+..||+|.|.+-.. +|..+.- +.++ .=+ -.|++.-. .. ...|+|.||--.. .
T Consensus 36 spCfC~IrL~~fP~-Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 36 SPCFCEIRLKGFPS-QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCeEEEEecCCCCc-cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 57799999988554 4444321 1221 111 14555411 11 1468899987443 2
Q ss_pred CCcceeeEEEeceeec--cCC---ceeeeeeecCCCC-CCCCCCCcEEEEEEeec
Q 001122 436 GSELIGTVAIPVEQIY--SGG---KVEGTYPVLNGSG-KPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 436 ~ddfIG~a~IpL~~L~--~G~---~~~~W~~L~~~~g-k~~~~~g~L~L~l~f~p 484 (1149)
+..+||++.|+|. +. .+. ..++|+.|=..++ +..+...+|||.++-.|
T Consensus 115 ~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 115 SGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred cceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 3579999999997 33 222 2378999933322 11224679999999644
No 240
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=35.51 E-value=1.8e+02 Score=39.17 Aligned_cols=6 Identities=50% Similarity=1.010 Sum_probs=2.3
Q ss_pred CCCCCC
Q 001122 228 NSPAYP 233 (1149)
Q Consensus 228 ~~~~~~ 233 (1149)
+++.|.
T Consensus 1455 tsp~ys 1460 (1605)
T KOG0260|consen 1455 TSPNYS 1460 (1605)
T ss_pred CCCCCC
Confidence 334443
No 241
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=32.25 E-value=1e+02 Score=34.27 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=31.5
Q ss_pred HHHHHHHHHhh---cceEEEEEeccceeeEEeCCC-CchHHHHHHHHHHHhhcCCc-EEEEE
Q 001122 548 YDICNAISQAQ---RLIYITGWSVWHKVKLVRDAS-PALDCTLGELLRSKSQEGVR-VLLLV 604 (1149)
Q Consensus 548 ~al~eAI~~Ar---~sI~I~~W~~~p~i~L~rd~~-~~~g~~L~dlL~~kA~rGVk-VrILv 604 (1149)
+.+.++|+.|+ ..++|.| |..++. ...-.-|..+|+.++++||+ |+|-+
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~G--------LlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~ 67 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMG--------LLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHA 67 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEE--------EESS-SSS--HHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEE--------EecCCCccccHHHHHHHHHHHHHcCCCEEEEEE
Confidence 45666677666 4799998 566654 34567888999999999987 65543
No 242
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=31.94 E-value=1.7e+02 Score=35.86 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=12.6
Q ss_pred cccccccccCCCCCCCcccccCCCch
Q 001122 114 YPYAQAQSSQDHYPFPETTAQLPSGV 139 (1149)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (1149)
+.-.|+|+| |-||+-.|.-.|-|+
T Consensus 466 Pg~~s~~~s--~~P~q~s~~~~pp~~ 489 (554)
T KOG0119|consen 466 PGMQSAQSS--SLPQQASTTSIPPGD 489 (554)
T ss_pred CCccccccc--cCCcccccccCCccc
Confidence 334444444 445555566666664
No 243
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=31.90 E-value=1.4e+02 Score=27.89 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=46.2
Q ss_pred cceeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhhc-ceEEEEEeccceeeEEeCCCCchHHHHHHHHHH
Q 001122 514 GGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQR-LIYITGWSVWHKVKLVRDASPALDCTLGELLRS 592 (1149)
Q Consensus 514 Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~-sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~ 592 (1149)
|+++.||.=|. .+..+.|.++|+.+++ -+++..-.++. .++.+....-..|.++..+
T Consensus 3 ~a~~SLYPmg~-------------------~dy~~~I~~~i~~~~~~gl~~~t~~~sT---~l~G~~~~Vf~~l~~~~~~ 60 (81)
T PF07615_consen 3 GAQFSLYPMGT-------------------DDYMDVILGAIDRLDDSGLWVETDHYST---QLRGDEEDVFDALEAAFER 60 (81)
T ss_dssp EEEEEEEETTS-------------------TTHHHHHHHHHHHCHHTTSEEEEETTEE---EEECBHHHHHHHHHHHHHH
T ss_pred eEEEEecccCC-------------------ccHHHHHHHHHHHHhhcCcEEeecccEE---EEECCHHHHHHHHHHHHHH
Confidence 67888887653 1356889999999975 47776654432 5555543345667777777
Q ss_pred HhhcCCcEEEEE
Q 001122 593 KSQEGVRVLLLV 604 (1149)
Q Consensus 593 kA~rGVkVrILv 604 (1149)
++++|..|-+-+
T Consensus 61 a~~~~~H~v~~~ 72 (81)
T PF07615_consen 61 AAEEGPHVVMVV 72 (81)
T ss_dssp HHCCSSSEEEEE
T ss_pred HhccCCeEEEEE
Confidence 788887776654
No 244
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.35 E-value=2.8e+02 Score=31.70 Aligned_cols=32 Identities=41% Similarity=0.599 Sum_probs=26.9
Q ss_pred cccCCCCCCCCCCCCCCCCCCcccccCCCccc
Q 001122 85 YPYEHPAPVSSSMPQTPQHSSSFEYFPHPYPY 116 (1149)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1149)
-++..|+|+-||.+..|.|+.+|.+-|-|-|+
T Consensus 246 a~~nnP~p~ySst~~ap~ps~f~~~~P~~qP~ 277 (338)
T KOG0917|consen 246 APANNPAPVYSSTGVAPNPSTFFTIQPTPQPI 277 (338)
T ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 35889999999999999999988887766444
No 245
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=26.30 E-value=1.3e+02 Score=35.09 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=14.0
Q ss_pred cccccCCCCCCCCCCCCCCCC
Q 001122 83 LLYPYEHPAPVSSSMPQTPQH 103 (1149)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ 103 (1149)
.+-|+-.|.|-+.||-..||-
T Consensus 314 h~NpaffpPP~~~s~GppP~~ 334 (498)
T KOG4849|consen 314 HNNPAFFPPPQLGSMGPPPQM 334 (498)
T ss_pred ccCcccCCCCCcCcCCCCCCC
Confidence 445666677778888766653
No 246
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=22.23 E-value=60 Score=39.66 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=24.0
Q ss_pred eeeeEEEEE---eC-eEEEEcccCcccccCCCCCCcceEEEEeC
Q 001122 998 YVHSKGMIV---DD-EYVILGSANINQRSMEGTRDTEIAMGAYQ 1037 (1149)
Q Consensus 998 YVHSKlmIV---DD-~~viIGSANiN~RSm~G~~DsEiav~i~d 1037 (1149)
--|||+||. |+ --|+|.||||-..=+. +-|=+|-+-|
T Consensus 101 ~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~---~~~q~vw~~d 141 (443)
T PF06087_consen 101 THHSKMMLLFYEDGSLRVVIPTANLTPYDWN---NKTQGVWIQD 141 (443)
T ss_dssp -B--EEEEEEETTCEEEEEEESS-BSHHHHC---SSB-EEEE--
T ss_pred cccceeEEEEeCCccEEEEEECCCCCHHHHC---CcceeEEEec
Confidence 579999998 66 7899999999888775 4555665544
No 247
>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]
Probab=21.95 E-value=36 Score=34.26 Aligned_cols=21 Identities=48% Similarity=0.646 Sum_probs=17.8
Q ss_pred CCcchhhccccCcccccCCCC
Q 001122 172 GQDSFVQDKLSSGRVFSRPHH 192 (1149)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~ 192 (1149)
-+-.||.|||+|+.||+.||-
T Consensus 102 teMDyvddkL~Sefvf~npna 122 (134)
T KOG1120|consen 102 TEMDYVDDKLSSEFVFSNPNA 122 (134)
T ss_pred ceehhhhhhhcCceEeeCCCc
Confidence 345689999999999999983
Done!