BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001123
(1149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 155 bits (393), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 175/391 (44%), Gaps = 87/391 (22%)
Query: 549 MENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETV 608
++N + AGT+NV G++ ++ L WL + + VG QE+++ +KE
Sbjct: 2 IQNFRFFAGTYNVN-GQSPKECLRLWLSNGIQAPDVYCVGFQELDL---------SKEAF 51
Query: 609 GLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPC 668
+ W + + L + + +V +L G+++ ++V++ Y+ +V+ V
Sbjct: 52 FFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGT 111
Query: 669 GFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLC 728
G +GNKG V +R + ++ +C VN H AAH+E RRN D+ ++C
Sbjct: 112 GIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDY------------KDIC 159
Query: 729 SAAAGTMPFLLLSCVLACSMYLLWLVYRSGLPLVLYIAAGASSVVQMLRSTNPLSGLTVE 788
S P LP PL+
Sbjct: 160 SRMQFCQP-------------------DPSLP--------------------PLT----- 175
Query: 789 GVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGM 848
+S D++++LGD NYR++ + ++ + I ++ F L DQL+ ++ A VF+G
Sbjct: 176 ----ISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGF 231
Query: 849 READIKFPPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASS 908
E ++ F PTYK++ G +D+ EK R PAWCDRIL++ +
Sbjct: 232 TEGELTFQPTYKYD---TGSDDWDTSEKCRAPAWCDRILWKGKN--------------IT 274
Query: 909 ILRYEACMDVTDSDHKPVRCIFSVDIARVDE 939
L Y++ M + SDHKPV +F + + V++
Sbjct: 275 QLSYQSHMALKTSDHKPVSSVFDIGVRVVND 305
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 146 bits (369), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 172/396 (43%), Gaps = 93/396 (23%)
Query: 545 LYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAA 604
+YT ++N + AGT+NV G++ ++ L WL + + VG QE+++ +
Sbjct: 1 MYTYIQNFRFFAGTYNVN-GQSPKECLRLWLSNGIQAPDVYCVGFQELDL---------S 50
Query: 605 KETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVA 664
KE + W + + L + + +V +L G+++ ++V++ Y+ +V+
Sbjct: 51 KEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAE 110
Query: 665 AVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRP 724
V G +GNKG V +R + ++ +C VN H AAH+E RRN D+ + M FC+P
Sbjct: 111 TVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQP 170
Query: 725 SNLCSAAAGTMPFLLLSCVLACSMYLLW---LVYRSGLPLVLYIAAGASSVVQMLRSTNP 781
++P L +S +LW L YR
Sbjct: 171 D-------PSLPPLTIS----NHDVILWLGDLNYR------------------------- 194
Query: 782 LSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEA 841
+ L VE V +L E ++ F L DQL+ ++ A
Sbjct: 195 IEELDVEKVKKLIE---------------------------EKDFQMLYAYDQLKIQVAA 227
Query: 842 GNVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSL 901
VF+G E ++ F PTYK++ G +D+ EK R PAWCDRIL++
Sbjct: 228 KTVFEGFTEGELTFQPTYKYD---TGSDDWDTSEKCRAPAWCDRILWKGKN--------- 275
Query: 902 ECPVASSILRYEACMDVTDSDHKPVRCIFSVDIARV 937
+ L Y++ M + SDHKPV +F + + V
Sbjct: 276 -----ITQLSYQSHMALKTSDHKPVSSVFDIGVRVV 306
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 85/181 (46%), Gaps = 34/181 (18%)
Query: 783 SGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAG 842
SGL + D V++ GDFNYR+ +TY+E I+Q +L E DQL +M G
Sbjct: 186 SGLRFRRGRSIFNHDYVVWFGDFNYRI-SLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTG 244
Query: 843 NVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLE 902
VF E I FPPTYKF+ G YD+ +K RVPAW DRILY R +L
Sbjct: 245 KVFPFFSELPITFPPTYKFD---IGTDIYDTSDKHRVPAWTDRILY---RGELVPHSYQS 298
Query: 903 CPVASSILRYEACMDVTDSDHKPVRCIFSVDIARVDESVRRQEFGDIMTSNEKVKIILED 962
P+ SDH+P+ + +I +VD EK KI+ E+
Sbjct: 299 VPLYY-------------SDHRPIYATYEANIVKVDR--------------EKKKILFEE 331
Query: 963 L 963
L
Sbjct: 332 L 332
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 18/195 (9%)
Query: 530 PLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVG-IVVVG 588
P+ + EL +E ++ +N+KI ++N+ G ++ L +WL + + I VVG
Sbjct: 3 PIHEYVNHELRKRENEFSEHKNVKIFVASYNLN-GCSATTKLENWLFPENTPLADIYVVG 61
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILD----DGSTFERVGSRQLAGL 644
QE+ + + V A W + ++L+ G + ++ S QL G
Sbjct: 62 FQEI--------VQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGT 113
Query: 645 LIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704
+ ++ +++ + +V+ G G GNKGAV +R D +CF+ H AA
Sbjct: 114 ALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN 173
Query: 705 VNRRNADFDHVYRTM 719
+ R DH YRT+
Sbjct: 174 YDER----DHDYRTI 184
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 152/389 (39%), Gaps = 96/389 (24%)
Query: 551 NLKILAGTWNVGQGRASQDALISWLGSAASDVG--IVVVGLQEVEMGAGFLAMSAAKETV 608
N+ + TWN+ + +L +L A +D + V+G+QE
Sbjct: 25 NVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQE----------------- 67
Query: 609 GLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPC 668
G + W + + L G + + S L +++++R++L + +V+ + V
Sbjct: 68 ---GCSDRREWETRLQETL--GPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTT 122
Query: 669 GFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLC 728
I KGA+G+ + F+ HF + V R D+ + + P N+
Sbjct: 123 RIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVL--PRNV- 179
Query: 729 SAAAGTMPFLLLSCVLACSMYLLWLVYRSGLPLVLYIAAGASSVVQMLRSTNPLSGLTVE 788
T P YRS A+ V
Sbjct: 180 ---PDTNP------------------YRSS----------AADVT--------------- 193
Query: 789 GVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFD--WLRERDQLRAEMEAGNVFQ 846
+ D V + GDFN+RL G D L + DQL EM G++F+
Sbjct: 194 -----TRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFK 248
Query: 847 GMREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRD-SRSDLASECSLECPV 905
G +E DI F P+YKF+ G YDS K+R P++ DR+LYR + D+ CPV
Sbjct: 249 GFQEPDIHFLPSYKFD---IGKDTYDSTSKQRTPSYTDRVLYRSRHKGDI-------CPV 298
Query: 906 ASSILRYEACMDVTDSDHKPVRCIFSVDI 934
+ Y +C + SDH+PV +F V +
Sbjct: 299 S-----YSSCPGIKTSDHRPVYGLFRVKV 322
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 799 VIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPT 858
+ + GD NYRLD + E ++IS++ F+ L DQL E E VF E +I FPPT
Sbjct: 186 LFWFGDLNYRLD-MDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPT 244
Query: 859 YKFEK----HLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEA 914
Y++E+ A +G + VP+WCDRIL++ E + C Y
Sbjct: 245 YRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKS-----YPETHIICN------SYGC 293
Query: 915 CMDVTDSDHKPVRCIFSVDIA 935
D+ SDH PV F V +
Sbjct: 294 TDDIVTSDHSPVFGTFEVGVT 314
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 552 LKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLE 611
+ + GTWN+G ++ + SW S + L EV + + G +
Sbjct: 8 ISVFIGTWNMGSVPPPKN-VTSWFTSKG-----LGKTLDEVT-----VTIPHDIYVFGTQ 56
Query: 612 GSAVG-HWWLDMIGKILDDGST--FERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPC 668
++VG WLD++ L + + + + + L + +AV V+ ++ + V ++V
Sbjct: 57 ENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKT 116
Query: 669 GFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTF 721
G +GNKGAVG+ FVNCH + E RRN ++ + R ++
Sbjct: 117 GIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSL 169
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 19/139 (13%)
Query: 796 ADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKF 855
+D + ++GD N R++ A+ + Q D L DQL+ E +F G E + F
Sbjct: 163 SDFLFWIGDLNVRVE-TNATHAKSLVDQNNIDGLMAFDQLKKAKEQ-KLFDGWTEPQVTF 220
Query: 856 PPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEAC 915
PTYKF+ + D + P+W DR LY+ L Y +
Sbjct: 221 KPTYKFKPNT------DEYDLSATPSWTDRALYKSGTGKTIQP-----------LSYNSL 263
Query: 916 MDVTDSDHKPVRCIFSVDI 934
+ ++H+PV F V +
Sbjct: 264 TNYKQTEHRPVLAKFRVTL 282
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYLP 459
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI- 362
Query: 460 FAVQCLCTFG 469
FA L G
Sbjct: 363 FAHPTLSVKG 372
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYLP 459
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI- 362
Query: 460 FAVQCLCTFG 469
FA L G
Sbjct: 363 FAHPTLSVKG 372
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYLP 459
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQ 363
Query: 460 FA 461
A
Sbjct: 364 AA 365
>pdb|1Q9I|A Chain A, The A251c:s430c Double Mutant Of Flavocytochrome C3 From
Shewanella Frigidimarina
Length = 571
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1P2H|A Chain A, H61m Mutant Of Flavocytochrome C3
Length = 571
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1P2E|A Chain A, H61a Mutant Of Flavocytochrome C3
Length = 571
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|2B7S|A Chain A, R381k Mutant Of Flavocytochrome C3
Length = 571
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
pdb|1Y0P|A Chain A, Flavocytochrome C3 With Mesaconate Bound
Length = 571
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|2B7R|A Chain A, Structure Of E378d Mutant Flavocytochrome C3
Length = 571
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|3L92|A Chain A, Phosphopantetheine Adenylyltransferase From Yersinia
Pestis Complexed With Coenzyme A.
pdb|3L93|A Chain A, Phosphopantetheine Adenylyltransferase From Yersinia
Pestis
Length = 162
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 59 RLDYMMEFLERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKP-PVRAAL 111
+L M L KL S +EK F SSS + E GGDI F P PV AL
Sbjct: 104 QLANMNRHLMPKLESVFLIPSEKWSFISSSLVKEVARHGGDITPFLPKPVTKAL 157
>pdb|2O6I|A Chain A, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|2O6I|B Chain B, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|3IRH|A Chain A, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|B Chain B, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|C Chain C, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|D Chain D, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
Length = 480
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 61 DYMMEFLERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKPPVRAA 110
D FL RK SAT TNEK+ A+ + L E I K G P + + ++
Sbjct: 342 DLAKRFLMRKPLKSATFTNEKESAATIAYLRELIEKVGFNPKYYTAINSS 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,935,602
Number of Sequences: 62578
Number of extensions: 1425798
Number of successful extensions: 2903
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2862
Number of HSP's gapped (non-prelim): 41
length of query: 1149
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1040
effective length of database: 8,152,335
effective search space: 8478428400
effective search space used: 8478428400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)